Citrus Sinensis ID: 046062

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------47
MELELGFKLTRTRDDEQTSIADFRITTDSSGPIFVSEETDSKFILTGYLKGFRRENIDIMINEAGDKIAISGKKPVQEMVLMGWIVQKKEVEIRAFRKVFQIPNGVILDKVKAKFNEETSNLTIFMPKSVKGHSGVVIEEVKEEEVDRGMPEAIDKIEDPEMKPVAADEVPEKGTNKAAPKEEIIEKIEEKQDPGQAEEPANDQRTFETTESAAEEIPENGKTEGAEEKFDGGESRPLENGAEAETERVEQTIREESKGPEVKSKEENERVAEESPGRTETVSSKPDGEAEISKITEPLQTEETWKERLPEEKAPEPRFEAHVPGPEMAKTIESGDDQGSLSTQVEEKHTASKDHHRMESEKPEDLRKQEPCQEVEELTKPEEPCQVPEPEETPQPNEIEPSEEKPDEQESEELEKQKGISEDAAAAAQMKKHVSKKSKVCPPLVVAGSALLVSLIVLVFQLIRAKKR
cccccccEEEEEccccccccccEEEccccccccEEEEccccEEEEEEEccccccccEEEEEcccccEEEEEEccccHHEEEcccEEEEHHHHHHccEEEEEccccEEcccEEEEEccccccEEEEcccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccHHHHHHHHcccccccccccccEEEEccHHHHHHHHEEEEEEccccc
ccEEccEEEEEcccccccccccEEEEEcccccEEEEEccccEEEEEEEccccEEccEEEEEcccccEEEEEccccHHHEEEEcEEEEccccEEEEEEEEEEccccEEEcEEEEEEcccccEEEEEEcccccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccHEEcHHHHHHHHHHEHHHHccHccc
melelgfkltrtrddeqtsiadfrittdssgpifvseetdskFILTGYLKGFRRENIDIMINEAGDkiaisgkkPVQEMVLMGWIVQKKEVEIRAFRKVfqipngviLDKVKAKFNeetsnltifmpksvkghsgvvieevkeeevdrgmpeaidkiedpemkpvaadevpekgtnkaapkEEIIEKIEekqdpgqaeepandqrtfetTESAaeeipengktegaeekfdggesrplengaeaETERVEQTIReeskgpevkskeenervaeespgrtetvsskpdgeaeiskiteplqteetwkerlpeekapeprfeahvpgpemaktiesgddqgslstQVEEKHtaskdhhrmesekpedlrkqepcqeveeltkpeepcqvpepeetpqpneiepseekpdeqeSEELEKQKGISEDAAAAAQMKKHVskkskvcpplvVAGSALLVSLIVLVFQLIRAKKR
melelgfkltrtrddeqtsiadfrittdssgpifvseetdskfILTGYLKGFRRENIDIMINEAGDKIAISGKKPVQEMVLMGWIVQKKEVEIRAFRKvfqipngvilDKVKAKFNEETsnltifmpksvkghsgVVIEevkeeevdrgmpeaidkiedpemkpvaadevpekgtnkaapkeeIIEKieekqdpgqaeepandqrtfettesaaeeipengktegaeekfdggesrplengaeaeterveqtireeskgpevkskeenervaeespgrtetvsskpdgeaeiskiteplqteetwkerlpeekapeprfeahvpgPEMAKTIESGDDQGSLSTQVEEkhtaskdhhrmesekpedlrkqePCQEVEEltkpeepcqvpepeetpqpneiepseekpdeQESEELEKQKGISEDAAAAAQMKKHVSKKSKVCPPLVVAGSALLVSLIVLVFQLIRAKKR
MELELGFKLTRTRDDEQTSIADFRITTDSSGPIFVSEETDSKFILTGYLKGFRRENIDIMINEAGDKIAISGKKPVQEMVLMGWIVQKKEVEIRAFRKVFQIPNGVILDKVKAKFNEETSNLTIFMPKSVKGHSGvvieevkeeevDRGMPEAIDKIEDPEMKPVAADEVPEKGTNKAAPkeeiiekieekQDPGQAEEPANDQRTFETTESAAEEIPENGKTEGAEEKFDGGESRPLENGAEAETERVEQTIREESKGPEVKSKEENERVAEESPGRTETVSSKPDGEAEISKITEPLQTEETWKERLPEEKAPEPRFEAHVPGPEMAKTIESGDDQGSLSTQVEEKHTASKDHHRMESEKPEDLRKQEPCQEVEELTKpeepcqvpepeetpqpneiepseekpdeqeseelekqKGISEDAAAAAQMKKHVSKKSKVCPPlvvagsallvslivlvFQLIRAKKR
**********************FRIT****GPIFVSEETDSKFILTGYLKGFRRENIDIMINEAGDKIAISGKKPVQEMVLMGWIVQKKEVEIRAFRKVFQIPNGVILDKVKAKFNEETSNLTIFMPKSVKGHSGVVI*************************************************************************************************************************************************************************************************************************************************************************************************************VCPPLVVAGSALLVSLIVLVFQLIR****
****LGFKLTRTRDDEQT*IADFRITTDSSGPIFVSEETDSKFILTGYLKGFRRENIDIMINEAGDKIAISGKKPVQEMVLMGWIVQKKEVEIRAFRKVFQIPNGVILDKVKAKFNEETSNLT*********************************************************************************************************************************************************************************************************************************************************************************************************************************VVAGSALLVSLIVLVFQLIRAK**
MELELGFKLTRTRDDEQTSIADFRITTDSSGPIFVSEETDSKFILTGYLKGFRRENIDIMINEAGDKIAISGKKPVQEMVLMGWIVQKKEVEIRAFRKVFQIPNGVILDKVKAKFNEETSNLTIFMPKSVKGHSGVVIEEVKEEEVDRGMPEAIDKIEDPEMKPVAADEVPEKGTNKAAPKEEIIEKIEE*****************************************************************************************************ISKITEPLQTEETWKERLPEEKAPEPRFEAHVPGPEMAKTIE**********************************************************************************************************VCPPLVVAGSALLVSLIVLVFQLIRAKKR
*ELELGFKLTRTRDDEQTSIADFRITTDSSGPIFVSEETDSKFILTGYLKGFRRENIDIMINEAGDKIAISGKKPVQEMVLMGWIVQKKEVEIRAFRKVFQIPNGVILDKVKAKFNEETSNLTIFMPKSVKGHSGVVIEEVK********************************************************************************************************************************************************************************************************************************************************************************************************KVCPPLVVAGSALLVSLIVLVFQLIRAK**
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiii
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MELELGFKLTRTRDDEQTSIADFRITTDSSGPIFVSEETDSKFILTGYLKGFRRENIDIMINEAGDKIAISGKKPVQEMVLMGWIVQKKEVEIRAFRKVFQIPNGVILDKVKAKFNEETSNLTIFMPKSVKGHSGVVIEEVKEEEVDRGMPEAIDKIEDPEMKPVAADEVPEKGTNKAAPKEEIIEKIEEKQDPGQAEEPANDQRTFETTESAAEEIPENGKTEGAEEKFDGGESRPLENGAEAETERVEQTIREESKGPEVKSKEENERVAEESPGRTETVSSKPDGEAEISKITEPLQTEETWKERLPEEKAPEPRFEAHVPGPEMAKTIESGDDQGSLSTQVEEKHTASKDHHRMESEKPEDLRKQEPCQEVEELTKPEEPCQVPEPEETPQPNEIEPSEEKPDEQESEELEKQKGISEDAAAAAQMKKHVSKKSKVCPPLVVAGSALLVSLIVLVFQLIRAKKR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query468
224062882445 predicted protein [Populus trichocarpa] 0.914 0.961 0.395 9e-66
224085117537 predicted protein [Populus trichocarpa] 0.967 0.843 0.367 2e-55
255566608507 conserved hypothetical protein [Ricinus 0.339 0.313 0.623 1e-50
296081183365 unnamed protein product [Vitis vinifera] 0.779 1.0 0.341 2e-45
356561424 2241 PREDICTED: uncharacterized protein LOC10 0.561 0.117 0.411 4e-43
356502354 2229 PREDICTED: uncharacterized protein LOC10 0.284 0.059 0.544 3e-37
357443643214 17.6 kDa class I heat shock protein [Med 0.301 0.658 0.587 1e-36
297839549249 hypothetical protein ARALYDRAFT_339849 [ 0.305 0.574 0.561 3e-34
15223729244 alpha-crystallin domain of heat shock pr 0.292 0.561 0.565 1e-33
356534045210 PREDICTED: 18.5 kDa class I heat shock p 0.299 0.666 0.534 2e-32
>gi|224062882|ref|XP_002300917.1| predicted protein [Populus trichocarpa] gi|222842643|gb|EEE80190.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  257 bits (656), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 192/485 (39%), Positives = 269/485 (55%), Gaps = 57/485 (11%)

Query: 1   MELELGFKLTRTRDDEQTSIADFRITTDSSGPIFVSEETDSKFILTGYLKGFRRENIDIM 60
           MELE G K+ RTRDD  +S  + RI  D +GP+F S ET++ F L GYLKGFR+EN DI 
Sbjct: 1   MELEPGLKIIRTRDD-ISSFTELRIAKDHAGPLFFSRETENMFTLIGYLKGFRKENTDIK 59

Query: 61  INEAGDKIAISGKKPVQEMVLMGWIVQKKEVEIRAFRKVFQIPNGVILDKVKAKFNEETS 120
           INE GD+I+ISGKKPVQE+VL+GWI+ KKEVE+R+FRK F+IP+GV+LDK+KA+F++E S
Sbjct: 60  INEDGDRISISGKKPVQEIVLIGWIMHKKEVELRSFRKAFRIPDGVVLDKIKARFDDEES 119

Query: 121 NLTIFMPKSVKGHSGVVIEEVKEEEVDRGMPEAIDKIEDPEMKPVAADEVPEKGTNKAAP 180
            LTI +PK VKG   V +EEVK EEVD+G  E    +         AD+ PE        
Sbjct: 120 TLTIILPKLVKGILDVELEEVKGEEVDKGRGETTQAV---------ADKAPE-----GES 165

Query: 181 KEEIIEKIEEKQDPGQAEEPANDQRTFETTESAAEEIPENGKTEGAEEKFDGGESRPLEN 240
           +E  ++++E      Q+++   ++R  E    AAE +PE       ++K +  +   LE 
Sbjct: 166 REPELKRVE------QSDQALQNKRVVEQKADAAEIVPERVVDTTLQKKLEPKDQSELEE 219

Query: 241 G----AEAETERVEQTIREES-KGPEVKSKEENERVAEESPGRTETVSSKPDGEAEISKI 295
                AE  +     T +E   K P++   E+            E   SK    AE ++ 
Sbjct: 220 ATPEKAEPPSTTTAATYQETVIKKPKLVLPEKE----------IEHQESKKAAPAEKTRS 269

Query: 296 TE-PLQTEETWKERLPEEKAP-EPRFEAHVPGPEMAKTIESGDDQGSLSTQVEEKHTASK 353
            E P   E+  K+  PE K+  E   E H  GPE+ +  E+  DQ +   +V  + +A  
Sbjct: 270 EELPGLKEQGKKQETPEAKSTREETLEKHPHGPELNQLTEAVMDQETKPPEVSNQPSAQA 329

Query: 354 DHHRMESEKPEDLRKQEPCQEVEEL---TKPEEPCQVPEPE------ETPQPNEIEPSEE 404
           D     +E+   + K E   E E+L   T  +EP  +PEP+      ETP P     + E
Sbjct: 330 DQGH--TEEANHVVKTEISHESEKLETETNVQEPT-IPEPDQEKKLAETPHPAYKSRNNE 386

Query: 405 KPDEQESEELEKQKGISEDAAAAAQMKKH-VSKKSKVCPPLVVAGSALLVSLIVLVFQLI 463
               +ES       GI  D   AA  +K+ VS+++K+CPPLVVAGSA+LVS++V V   I
Sbjct: 387 AQGSKESH------GIGNDIKEAATNRKNPVSRRTKLCPPLVVAGSAILVSIVVFVIGWI 440

Query: 464 RAKKR 468
           RAKKR
Sbjct: 441 RAKKR 445

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224085117|ref|XP_002307498.1| predicted protein [Populus trichocarpa] gi|222856947|gb|EEE94494.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255566608|ref|XP_002524288.1| conserved hypothetical protein [Ricinus communis] gi|223536379|gb|EEF38028.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|296081183|emb|CBI18209.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356561424|ref|XP_003548981.1| PREDICTED: uncharacterized protein LOC100775742 [Glycine max] Back     alignment and taxonomy information
>gi|356502354|ref|XP_003519984.1| PREDICTED: uncharacterized protein LOC100806444 [Glycine max] Back     alignment and taxonomy information
>gi|357443643|ref|XP_003592099.1| 17.6 kDa class I heat shock protein [Medicago truncatula] gi|355481147|gb|AES62350.1| 17.6 kDa class I heat shock protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|297839549|ref|XP_002887656.1| hypothetical protein ARALYDRAFT_339849 [Arabidopsis lyrata subsp. lyrata] gi|297333497|gb|EFH63915.1| hypothetical protein ARALYDRAFT_339849 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15223729|ref|NP_177803.1| alpha-crystallin domain of heat shock protein-containing protein [Arabidopsis thaliana] gi|6143905|gb|AAF04451.1|AC010718_20 putative heat shock protein; 50341-51150 [Arabidopsis thaliana] gi|332197766|gb|AEE35887.1| alpha-crystallin domain of heat shock protein-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356534045|ref|XP_003535568.1| PREDICTED: 18.5 kDa class I heat shock protein-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query468
TAIR|locus:2030061244 AT1G76770 "AT1G76770" [Arabido 0.358 0.688 0.491 2.4e-35
TAIR|locus:2030071 1871 AT1G76780 "AT1G76780" [Arabido 0.568 0.142 0.261 4.5e-10
UNIPROTKB|J9P0101017 NEFH "Uncharacterized protein" 0.465 0.214 0.257 2e-07
ZFIN|ZDB-GENE-070912-423 1698 rpgra "retinitis pigmentosa GT 0.630 0.173 0.255 3.7e-07
ZFIN|ZDB-GENE-090313-297 1128 si:dkey-27m7.4 "si:dkey-27m7.4 0.482 0.200 0.246 3.8e-07
TAIR|locus:2162097 778 AT5G55660 [Arabidopsis thalian 0.435 0.262 0.277 6.5e-07
UNIPROTKB|F1PZZ31061 NEFH "Uncharacterized protein" 0.463 0.204 0.255 7.6e-07
TAIR|locus:504955937734 AT2G22795 "AT2G22795" [Arabido 0.386 0.246 0.260 7.8e-07
UNIPROTKB|P120361026 NEFH "Neurofilament heavy poly 0.358 0.163 0.275 9.3e-07
UNIPROTKB|J9P5151135 NEFH "Uncharacterized protein" 0.463 0.191 0.257 1.1e-06
TAIR|locus:2030061 AT1G76770 "AT1G76770" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 382 (139.5 bits), Expect = 2.4e-35, P = 2.4e-35
 Identities = 85/173 (49%), Positives = 114/173 (65%)

Query:     1 MELELGFKLTRTRDDEQTSIADFRITTDSSGPIFVSEETDSKFILTGYLKGFRRENIDIM 60
             MELELG K+TRT+DD  +S  DFR+  DS G   +S ET+S F L  +LKGF+++ IDI 
Sbjct:     1 MELELGLKITRTKDDVSSS-TDFRVARDSFGHRSLSRETNSVFFLILHLKGFKKDGIDIE 59

Query:    61 INEAGDKIAISGKKPVQEMVLMGWIVQKKEVEIRAFRKVFQIPNGVILDKVKAKFNEETS 120
             IN+ G+ I ISG+K V+EMVL+ W+  KKE EI+ F+KVF+IP+ VILDK+KA+FNEE  
Sbjct:    60 INKEGNLIKISGRKQVEEMVLVKWVEWKKETEIKEFKKVFRIPDIVILDKIKARFNEEDG 119

Query:   121 NLTIFMPKSVKGHSGXXXXXXXXXXXDRGMPEAIDKIEDPEMKPVAADEVPEK 173
              LT+ MPK VKG +G           +  M E I + E  E K    +E+ E+
Sbjct:   120 TLTVTMPKKVKGITGLKIEEEDE---EEEMKEPIVE-EKTEEKTEPEEEIKEE 168
GO:0003674 "molecular_function" evidence=ND
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0009408 "response to heat" evidence=RCA
GO:0009644 "response to high light intensity" evidence=RCA
GO:0042542 "response to hydrogen peroxide" evidence=RCA
TAIR|locus:2030071 AT1G76780 "AT1G76780" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|J9P010 NEFH "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-070912-423 rpgra "retinitis pigmentosa GTPase regulator a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-090313-297 si:dkey-27m7.4 "si:dkey-27m7.4" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
TAIR|locus:2162097 AT5G55660 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|F1PZZ3 NEFH "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
TAIR|locus:504955937 AT2G22795 "AT2G22795" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|P12036 NEFH "Neurofilament heavy polypeptide" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|J9P515 NEFH "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pg.C_LG_II000631
hypothetical protein (445 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query468
cd0646488 cd06464, ACD_sHsps-like, Alpha-crystallin domain ( 4e-09
cd0029880 cd00298, ACD_sHsps_p23-like, This domain family in 1e-07
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 5e-07
TIGR00927 1096 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger 2e-06
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 9e-06
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 1e-05
COG0071146 COG0071, IbpA, Molecular chaperone (small heat sho 3e-05
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 5e-04
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 7e-04
PRK10263 1355 PRK10263, PRK10263, DNA translocase FtsK; Provisio 0.002
>gnl|CDD|107221 cd06464, ACD_sHsps-like, Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps) Back     alignment and domain information 
 Score = 53.3 bits (129), Expect = 4e-09
 Identities = 26/91 (28%), Positives = 47/91 (51%), Gaps = 6/91 (6%)

Query: 38  ETDSKFILTGYLKGFRRENIDIMINEAGDKIAISGKKPVQEMVLMGWIVQKKEVEIRAFR 97
           ETD  +++   L GF++E+I + +      + ISG++  +E     ++ +  E    +F 
Sbjct: 4   ETDDAYVVEADLPGFKKEDIKVEVE--DGVLTISGEREEEEEEEENYLRR--ERSYGSFS 59

Query: 98  KVFQIPNGVILDKVKAKFNEETSNLTIFMPK 128
           + F++P  V  DK+KA        LTI +PK
Sbjct: 60  RSFRLPEDVDPDKIKASLENGV--LTITLPK 88

sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. Length = 88
>gnl|CDD|107219 cd00298, ACD_sHsps_p23-like, This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|223149 COG0071, IbpA, Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 468
PRK10743137 heat shock protein IbpA; Provisional 99.93
PRK11597142 heat shock chaperone IbpB; Provisional 99.92
cd0647292 ACD_ScHsp26_like Alpha crystallin domain (ACD) fou 99.92
COG0071146 IbpA Molecular chaperone (small heat shock protein 99.92
cd0647193 ACD_LpsHSP_like Group of bacterial proteins contai 99.9
cd0647090 ACD_IbpA-B_like Alpha-crystallin domain (ACD) foun 99.88
PF00011102 HSP20: Hsp20/alpha crystallin family This prints e 99.88
cd0649786 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domai 99.86
cd0647883 ACD_HspB4-5-6 Alpha-crystallin domain found in alp 99.85
cd0648287 ACD_HspB10 Alpha crystallin domain (ACD) found in 99.85
cd0649884 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domai 99.84
cd0647981 ACD_HspB7_like Alpha crystallin domain (ACD) found 99.83
cd0647683 ACD_HspB2_like Alpha crystallin domain (ACD) found 99.82
cd0648187 ACD_HspB9_like Alpha crystallin domain (ACD) found 99.81
cd0647586 ACD_HspB1_like Alpha crystallin domain (ACD) found 99.81
cd0646488 ACD_sHsps-like Alpha-crystallin domain (ACD) of al 99.8
cd0647783 ACD_HspB3_Like Alpha crystallin domain (ACD) found 99.79
cd0652683 metazoan_ACD Alpha-crystallin domain (ACD) of meta 99.79
KOG0710196 consensus Molecular chaperone (small heat-shock pr 99.68
cd0648091 ACD_HspB8_like Alpha-crystallin domain (ACD) found 99.57
cd0029880 ACD_sHsps_p23-like This domain family includes the 99.46
KOG3591173 consensus Alpha crystallins [Posttranslational mod 99.21
cd0646978 p23_DYX1C1_like p23_like domain found in proteins 99.16
cd0646384 p23_like Proteins containing this p23_like domain 98.77
PF05455177 GvpH: GvpH; InterPro: IPR008633 This family consis 98.66
cd0646684 p23_CS_SGT1_like p23_like domain similar to the C- 98.22
PF08190328 PIH1: pre-RNA processing PIH1/Nop17 97.73
PF0496979 CS: CS domain; InterPro: IPR017447 The function of 97.25
cd06465108 p23_hB-ind1_like p23_like domain found in human (h 96.8
cd0646785 p23_NUDC_like p23_like domain of NUD (nuclear dist 96.21
cd0648984 p23_CS_hSgt1_like p23_like domain similar to the C 95.62
cd0649385 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear 95.16
cd0646892 p23_CacyBP p23_like domain found in proteins simil 94.56
cd0649493 p23_NUDCD2_like p23-like NUD (nuclear distribution 94.33
cd0648887 p23_melusin_like p23_like domain similar to the C- 93.87
PLN03088356 SGT1, suppressor of G2 allele of SKP1; Provisional 85.2
cd0649087 p23_NCB5OR p23_like domain found in NAD(P)H cytoch 83.32
cd00237106 p23 p23 binds heat shock protein (Hsp)90 and parti 80.62
cd0649287 p23_mNUDC_like p23-like NUD (nuclear distribution) 80.26
>PRK10743 heat shock protein IbpA; Provisional Back     alignment and domain information 
Probab=99.93  E-value=8.4e-26  Score=197.84  Aligned_cols=102  Identities=14%  Similarity=0.242  Sum_probs=87.1

Q ss_pred             Cccccc-ccCCeEEEEEecCCCCCCCeEEEEecCCCEEEEEeeeccceeeecceEEEEEEeecceEEEEEECCCCCccCC
Q 046062           32 PIFVSE-ETDSKFILTGYLKGFRRENIDIMINEAGDKIAISGKKPVQEMVLMGWIVQKKEVEIRAFRKVFQIPNGVILDK  110 (468)
Q Consensus        32 P~Fns~-ETDDeYILeAELPGVkKEDIDIsVdEDgntLTISGERk~EEeeEe~~~Y~RRERsyGsFsRSFtLPddVD~DK  110 (468)
                      |.++++ +++++|+|.|+||||+|+||+|+|+  +++|+|+|+++.+. .+  ..|+|+||++|+|+|+|+||++||.+ 
T Consensus        35 p~~di~ee~~~~~~v~aelPGv~kedi~V~v~--~~~LtI~ge~~~~~-~~--~~~~~~Er~~g~F~R~~~LP~~Vd~~-  108 (137)
T PRK10743         35 PPYNVELVDENHYRIAIAVAGFAESELEITAQ--DNLLVVKGAHADEQ-KE--RTYLYQGIAERNFERKFQLAENIHVR-  108 (137)
T ss_pred             CcEEEEEcCCCEEEEEEECCCCCHHHeEEEEE--CCEEEEEEEECccc-cC--CcEEEEEEECCEEEEEEECCCCcccC-
Confidence            667888 5899999999999999999999995  67999999986543 22  24899999999999999999999999 


Q ss_pred             cEEEeeCCCcEEEEEccCcCCCCCCceEEeec
Q 046062          111 VKAKFNEETSNLTIFMPKSVKGHSGVVIEEVK  142 (468)
Q Consensus       111 IKAKYkNENGVLTITLPKkEeek~gvkIeEVK  142 (468)
                       +|+|+  ||||+|+|||........+.++|+
T Consensus       109 -~A~~~--dGVL~I~lPK~~~~~~~~r~I~I~  137 (137)
T PRK10743        109 -GANLV--NGLLYIDLERVIPEAKKPRRIEIN  137 (137)
T ss_pred             -cCEEe--CCEEEEEEeCCCccccCCeEEeeC
Confidence             49998  899999999986555566666663

>PRK11597 heat shock chaperone IbpB; Provisional Back     alignment and domain information
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins Back     alignment and domain information
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18 Back     alignment and domain information
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins Back     alignment and domain information
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry Back     alignment and domain information
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa) Back     alignment and domain information
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20 Back     alignment and domain information
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins Back     alignment and domain information
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa) Back     alignment and domain information
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins Back     alignment and domain information
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins Back     alignment and domain information
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins Back     alignment and domain information
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins Back     alignment and domain information
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps) Back     alignment and domain information
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins Back     alignment and domain information
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps) Back     alignment and domain information
>KOG0710 consensus Molecular chaperone (small heat-shock protein Hsp26/Hsp42) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21 Back     alignment and domain information
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins Back     alignment and domain information
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1 Back     alignment and domain information
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1 Back     alignment and domain information
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [] Back     alignment and domain information
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1) Back     alignment and domain information
>PF08190 PIH1: pre-RNA processing PIH1/Nop17 Back     alignment and domain information
>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown Back     alignment and domain information
>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins Back     alignment and domain information
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins Back     alignment and domain information
>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins Back     alignment and domain information
>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins Back     alignment and domain information
>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP) Back     alignment and domain information
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins Back     alignment and domain information
>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins Back     alignment and domain information
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional Back     alignment and domain information
>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins Back     alignment and domain information
>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor Back     alignment and domain information
>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query468
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
3gdb_A 937 Endo-D, putative uncharacterized protein SPR0440; 5e-07
3gdb_A 937 Endo-D, putative uncharacterized protein SPR0440; 8e-05
3gdb_A 937 Endo-D, putative uncharacterized protein SPR0440; 2e-04
3gdb_A 937 Endo-D, putative uncharacterized protein SPR0440; 4e-04
3gdb_A 937 Endo-D, putative uncharacterized protein SPR0440; 4e-04
3q9p_A85 Heat shock protein beta-1; alpha-crystallin domain 6e-05
2klr_A175 Alpha-crystallin B chain; protein, dimer, oligomer 1e-04
3gla_A100 Low molecular weight heat shock protein; HSPA, SHP 5e-04
2y1y_A90 Alpha-crystallin B chain,; small heat shock protei 6e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 56.4 bits (135), Expect = 1e-08
 Identities = 64/494 (12%), Positives = 135/494 (27%), Gaps = 151/494 (30%)

Query: 1   MELELGFKLTRTRD----DEQTSIADF--RITTDSSGPIFVSEETDSKFILTGYLKGFRR 54
           M+ E G    + +D     E   + +F  +   D    I   EE                
Sbjct: 7   MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEE---------------- 50

Query: 55  ENIDIMINEAGDKIAISGKKPVQEMVLMGWIVQKKEVEI--RAFRKVFQIPNGVILDKVK 112
             ID +I           K  V   + + W +  K+ E+  +   +V +I    ++  +K
Sbjct: 51  --IDHIIMS---------KDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIK 99

Query: 113 AKFNEETSNLTIFMPKSVKGHSGVVIEEVKEEEVDRGMPEAIDKIE------DPE----- 161
            +  + +    +++ +  + ++    +   +  V R   +   K+        P      
Sbjct: 100 TEQRQPSMMTRMYIEQRDRLYNDN--QVFAKYNVSR--LQPYLKLRQALLELRPAKNVLI 155

Query: 162 --M----KPV-AADEVPEKGTNKAAP-------------KEEIIEKIEE---KQDPGQAE 198
             +    K   A D                          E ++E +++   + DP    
Sbjct: 156 DGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTS 215

Query: 199 EPANDQRTFETTESAAEE---------------IPENGKTEGAEEKFDGGESRPL----- 238
              +         S   E               +  N +   A   F+    + L     
Sbjct: 216 RSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS-CKILLTTRF 274

Query: 239 ENGAEA--ETERVEQTIREESKG-PEVKSKEENERVAEESPG--RTETVSSKPDGEAEIS 293
           +   +          ++   S      + K    +  +  P     E +++ P     +S
Sbjct: 275 KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP---RRLS 331

Query: 294 KITEPLQTE-ETWKERLPEEKAPEPRFEAHVPGPEMAKTIESGDDQGSLSTQVEEKHTAS 352
            I E ++    TW             ++ HV   ++   IES     SL           
Sbjct: 332 IIAESIRDGLATWD-----------NWK-HVNCDKLTTIIES-----SL----------- 363

Query: 353 KDHHRMESEKPEDLRKQEPCQEVEELTK-PEEPCQVPEPEETPQP--NEIEPSEEKPDEQ 409
                    +P + RK       + L+  P        P         ++  S+      
Sbjct: 364 ------NVLEPAEYRKM-----FDRLSVFPPS---AHIPTILLSLIWFDVIKSDV---MV 406

Query: 410 ESEELEKQKGISED 423
              +L K   + + 
Sbjct: 407 VVNKLHKYSLVEKQ 420
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937 Back     alignment and structure
>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937 Back     alignment and structure
>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937 Back     alignment and structure
>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937 Back     alignment and structure
>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937 Back     alignment and structure
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone, charcot-marie-tooth DISE neuronopathy, IG-like fold, stress response; 2.00A {Homo sapiens} PDB: 3q9q_A Length = 85 Back     alignment and structure
>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity, intermolecular INTE chaperone, SHSP, human, small heat-shock protein, cataract; NMR {Homo sapiens} PDB: 2ygd_A Length = 175 Back     alignment and structure
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high resolution, stress response, chaperone; 1.64A {Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A Length = 100 Back     alignment and structure
>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone, stress protein, eye LEN protein, cataract; HET: MSE; 2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A Length = 90 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query468
3gla_A100 Low molecular weight heat shock protein; HSPA, SHP 99.94
4fei_A102 Heat shock protein-related protein; stress respons 99.92
1gme_A151 Heat shock protein 16.9B; small heat shock protein 99.92
4eld_A161 MJ16.5-P1, small heat shock protein HSP16.5; chape 99.91
3aab_A123 Putative uncharacterized protein ST1653; alpha-cry 99.89
3l1e_A106 Alpha-crystallin A chain; lens transparency, polyd 99.88
3q9p_A85 Heat shock protein beta-1; alpha-crystallin domain 99.87
2wj5_A101 Heat shock protein beta-6; chaperone, disulfide bo 99.87
2y1y_A90 Alpha-crystallin B chain,; small heat shock protei 99.85
2bol_A314 TSP36, small heat shock protein; A-crystallin, mol 99.83
2klr_A175 Alpha-crystallin B chain; protein, dimer, oligomer 99.82
2bol_A314 TSP36, small heat shock protein; A-crystallin, mol 99.79
1rl1_A114 Suppressor of G2 allele of SKP1 homolog; beta sand 98.64
2xcm_C92 SGT1-like protein, cytosolic heat shock protein 90 98.55
2k8q_A134 Protein SHQ1; beta-sandwich, CS domain, nucleus, s 97.57
3eud_A115 Protein SHQ1; CS domain HSP20-like domain SHQ1 H/A 97.09
3igf_A374 ALL4481 protein; two-domained protein consisting o 96.53
1wfi_A131 Nuclear distribution gene C homolog; NUDC, riken s 95.2
1x5m_A127 Calcyclin-binding protein; CS domain, structural g 95.1
3qor_A121 Nuclear migration protein NUDC; beta-sandwich, cha 94.41
1wgv_A124 KIAA1068 protein; CS domain, HSP20-like fold, stru 94.22
2o30_A131 Nuclear movement protein; MCSG, structural genomic 93.9
1wh0_A134 Ubiquitin carboxyl-terminal hydrolase 19; USP, CS 93.6
2cg9_X134 CO-chaperone protein SBA1; chaperone complex, HSP9 93.5
1ejf_A125 Progesterone receptor P23; chaperone, CO-chaperone 93.15
2rh0_A157 NUDC domain-containing protein 2; 13542905, nuclea 91.85
2kmw_A150 Uncharacterized protein AT3G03773; protein structu 89.5
2ks1_B44 Epidermal growth factor receptor; ERBB1, ERBB2, tr 85.93
2l2t_A44 Receptor tyrosine-protein kinase ERBB-4; transmemb 81.68
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high resolution, stress response, chaperone; 1.64A {Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A Back     alignment and structure
Probab=99.94  E-value=1.1e-26  Score=186.03  Aligned_cols=98  Identities=19%  Similarity=0.271  Sum_probs=86.8

Q ss_pred             CCCCcccccccCCeEEEEEecCCCCCCCeEEEEecCCCEEEEEeeeccceeeecceEEEEEEeecceEEEEEECCCCCcc
Q 046062           29 SSGPIFVSEETDSKFILTGYLKGFRRENIDIMINEAGDKIAISGKKPVQEMVLMGWIVQKKEVEIRAFRKVFQIPNGVIL  108 (468)
Q Consensus        29 ~~~P~Fns~ETDDeYILeAELPGVkKEDIDIsVdEDgntLTISGERk~EEeeEe~~~Y~RRERsyGsFsRSFtLPddVD~  108 (468)
                      .|.|.++++|++++|+|.++||||+++||+|+++  ++.|+|+|++........ ..|+++||.+|+|+|+|.||.+||.
T Consensus         2 ~~~P~~di~e~~~~~~v~~~lPG~~~edi~v~~~--~~~L~I~g~~~~~~~~~~-~~~~~~er~~g~f~r~~~LP~~vd~   78 (100)
T 3gla_A            2 QWVPRVDIKEEVNHFVLYADLPGIDPSQIEVQMD--KGILSIRGERKSESSTET-ERFSRIERRYGSFHRRFALPDSADA   78 (100)
T ss_dssp             CSCCCEEEEECSSEEEEEEECTTSCGGGCEEEEE--TTEEEEEEEECCGGGSSG-GGEEEECCCCEEEEEEEECCTTBCT
T ss_pred             CccCcEEEEECCCEEEEEEECCCCCHHHEEEEEE--CCEEEEEEEEcCcCccCC-ccEEEEeecceEEEEEEECCCCcCh
Confidence            4788899999999999999999999999999995  689999999986543322 2489999999999999999999999


Q ss_pred             CCcEEEeeCCCcEEEEEccCcCC
Q 046062          109 DKVKAKFNEETSNLTIFMPKSVK  131 (468)
Q Consensus       109 DKIKAKYkNENGVLTITLPKkEe  131 (468)
                      ++|+|+|+  ||||+|+|||.+.
T Consensus        79 ~~i~A~~~--~GvL~I~~pK~~~   99 (100)
T 3gla_A           79 DGITAAGR--NGVLEIRIPKRPA   99 (100)
T ss_dssp             TSCEEEEE--TTEEEEEEEBC--
T ss_pred             HHeEEEEe--CCEEEEEEecCCC
Confidence            99999998  8999999999864
>4fei_A Heat shock protein-related protein; stress response, alpha-crystallin domain fold, aggregates, C chaperone; 2.40A {Deinococcus radiodurans} Back     alignment and structure
>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone, alpha-crystallin; 2.70A {Triticum aestivum} SCOP: b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A Back     alignment and structure
>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A {Methanocaldococcus jannaschii} PDB: 1shs_A Back     alignment and structure
>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain, chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A Back     alignment and structure
>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity, protein aggregation, CRYS eye lens protein, chaperone; 1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A Back     alignment and structure
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone, charcot-marie-tooth DISE neuronopathy, IG-like fold, stress response; 2.00A {Homo sapiens} PDB: 3q9q_A Back     alignment and structure
>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress response; 1.12A {Rattus norvegicus} Back     alignment and structure
>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone, stress protein, eye LEN protein, cataract; HET: MSE; 2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A Back     alignment and structure
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata} Back     alignment and structure
>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity, intermolecular INTE chaperone, SHSP, human, small heat-shock protein, cataract; NMR {Homo sapiens} PDB: 2ygd_A Back     alignment and structure
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata} Back     alignment and structure
>1rl1_A Suppressor of G2 allele of SKP1 homolog; beta sandwich, 7 beta strands, similar to P23, lacking LAST beta strand SEEN in P23, protein degradation; NMR {Homo sapiens} SCOP: b.15.1.3 Back     alignment and structure
>2xcm_C SGT1-like protein, cytosolic heat shock protein 90; chaperone-protein binding complex, stress response; HET: ADP; 2.20A {Arabidopsis thaliana} PDB: 2jki_S* Back     alignment and structure
>2k8q_A Protein SHQ1; beta-sandwich, CS domain, nucleus, structural protein; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>3eud_A Protein SHQ1; CS domain HSP20-like domain SHQ1 H/ACA snoRNP ribosome biogenesis, nucleus, nuclear protein; HET: MSE; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP} Back     alignment and structure
>1wfi_A Nuclear distribution gene C homolog; NUDC, riken structural genomics/proteomics initiative, RSGI, structural genomics, transport protein; NMR {Mus musculus} SCOP: b.15.1.4 Back     alignment and structure
>1x5m_A Calcyclin-binding protein; CS domain, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3qor_A Nuclear migration protein NUDC; beta-sandwich, chaperone, protein cell cycle; HET: OCS; 1.75A {Homo sapiens} PDB: 3qor_B* 2cr0_A Back     alignment and structure
>1wgv_A KIAA1068 protein; CS domain, HSP20-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.15.1.4 Back     alignment and structure
>2o30_A Nuclear movement protein; MCSG, structural genomics, PSI-2, structure initiative; 1.66A {Encephalitozoon cuniculi} Back     alignment and structure
>1wh0_A Ubiquitin carboxyl-terminal hydrolase 19; USP, CS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.15.1.3 Back     alignment and structure
>2cg9_X CO-chaperone protein SBA1; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae} Back     alignment and structure
>1ejf_A Progesterone receptor P23; chaperone, CO-chaperone, beta-sandwich; 2.49A {Homo sapiens} SCOP: b.15.1.2 Back     alignment and structure
>2rh0_A NUDC domain-containing protein 2; 13542905, nuclear movement protein, structural genomics, joint center for structural genomics, JCSG; 1.95A {Mus musculus} Back     alignment and structure
>2kmw_A Uncharacterized protein AT3G03773; protein structure initiative, center for eukaryotic structural genomics, CESG, structural genomics; NMR {Arabidopsis thaliana} Back     alignment and structure
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens} Back     alignment and structure
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 468
d1gmea_150 b.15.1.1 (A:) Small heat shock protein {Wheat (Tri 1e-04
d1shsa_115 b.15.1.1 (A:) Small heat shock protein {Archaeon M 8e-04
>d1gmea_ b.15.1.1 (A:) Small heat shock protein {Wheat (Triticum aestivum) [TaxId: 4565]} Length = 150 Back     information, alignment and structure

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: HSP20
domain: Small heat shock protein
species: Wheat (Triticum aestivum) [TaxId: 4565]

 Score = 40.1 bits (93), Expect = 1e-04
 Identities = 18/94 (19%), Positives = 42/94 (44%), Gaps = 4/94 (4%)

Query: 38  ETDSKFILTGYLKGFRRENIDIMINEAGDKIAISGKKPVQEMVLMGWIVQKKEVEIRAFR 97
           ET    +    L G ++E + + + + G+ + +SG++  ++         + E     F 
Sbjct: 49  ETPEAHVFKADLPGVKKEEVKVEVED-GNVLVVSGERTKEKEDKNDK-WHRVERSSGKFV 106

Query: 98  KVFQIPNGVILDKVKAKFNEETSNLTIFMPKSVK 131
           + F++     +++VKA        LT+ +PK+  
Sbjct: 107 RRFRLLEDAKVEEVKAGLENGV--LTVTVPKAEV 138
>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 115 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query468
d1gmea_150 Small heat shock protein {Wheat (Triticum aestivum 99.91
d1shsa_115 Small heat shock protein {Archaeon Methanococcus j 99.9
d1rl1a_92 Suppressor of G2 allele of skp1 homolog, gst1 {Hum 97.15
d1wfia_131 Nuclear migration protein nudC {Mouse (Mus musculu 91.86
d1wh0a_134 Ubiquitin carboxyl-terminal hydrolase 19, USP19 {H 89.41
d1wgva_124 NudC domain containing protein 3, NUDCD3 (KIAA1068 88.71
d1ejfa_110 Co-chaperone p23 {Human (Homo sapiens) [TaxId: 960 88.64
>d1gmea_ b.15.1.1 (A:) Small heat shock protein {Wheat (Triticum aestivum) [TaxId: 4565]} Back     information, alignment and structure
class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: HSP20
domain: Small heat shock protein
species: Wheat (Triticum aestivum) [TaxId: 4565]

Probab=99.91  E-value=8.1e-25  Score=186.07  Aligned_cols=107  Identities=18%  Similarity=0.276  Sum_probs=92.9

Q ss_pred             CcccccccCCeEEEEEecCCCCCCCeEEEEecCCCEEEEEeeeccceeeecceEEEEEEeecceEEEEEECCCCCccCCc
Q 046062           32 PIFVSEETDSKFILTGYLKGFRRENIDIMINEAGDKIAISGKKPVQEMVLMGWIVQKKEVEIRAFRKVFQIPNGVILDKV  111 (468)
Q Consensus        32 P~Fns~ETDDeYILeAELPGVkKEDIDIsVdEDgntLTISGERk~EEeeEe~~~Y~RRERsyGsFsRSFtLPddVD~DKI  111 (468)
                      |.+++.|++++|+|+++||||+++||+|+|+ +++.|+|+|++......+. ..|+++||.+|+|+|+|.||.+||.++|
T Consensus        43 p~~dv~e~~~~~~i~~~lPG~~~edi~v~v~-~~~~l~i~~~~~~~~~~~~-~~~~~~e~~~~~f~r~~~LP~~vd~~~i  120 (150)
T d1gmea_          43 ARMDWKETPEAHVFKADLPGVKKEEVKVEVE-DGNVLVVSGERTKEKEDKN-DKWHRVERSSGKFVRRFRLLEDAKVEEV  120 (150)
T ss_dssp             GCEEEEECSSEEEEEEECTTCCGGGEEEEEE-TTTEEEEEECCCCCCCCTT-CEEEECCCCCCCEEEEEECSSCCCGGGC
T ss_pred             CceeEEECCCEEEEEEEeCCCccCCEEEEEE-EccceeEEEEEeccccccc-ceeeeeeeccceEEEEEECCCCeeecee
Confidence            5567799999999999999999999999997 5678999999876544333 3589999999999999999999999999


Q ss_pred             EEEeeCCCcEEEEEccCcCCCCCCceEEeec
Q 046062          112 KAKFNEETSNLTIFMPKSVKGHSGVVIEEVK  142 (468)
Q Consensus       112 KAKYkNENGVLTITLPKkEeek~gvkIeEVK  142 (468)
                      +|+|+  ||||+|+|||.+..++..+.++|.
T Consensus       121 ~A~~~--nGvL~I~lpK~~~~~~~~~~I~I~  149 (150)
T d1gmea_         121 KAGLE--NGVLTVTVPKAEVKKPEVKAIQIS  149 (150)
T ss_dssp             EEEEE--TTEEEEEEECCCCCTTCCCCCCCC
T ss_pred             EEEEE--CCEEEEEEEcCCcCCCCceEEecc
Confidence            99998  899999999998777766666554
>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1rl1a_ b.15.1.3 (A:) Suppressor of G2 allele of skp1 homolog, gst1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wfia_ b.15.1.4 (A:) Nuclear migration protein nudC {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wh0a_ b.15.1.3 (A:) Ubiquitin carboxyl-terminal hydrolase 19, USP19 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wgva_ b.15.1.4 (A:) NudC domain containing protein 3, NUDCD3 (KIAA1068) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ejfa_ b.15.1.2 (A:) Co-chaperone p23 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure