Citrus Sinensis ID: 046070

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------31
Protein Sequence
EKNSGVQQPHLRREFHSIPEQMSSCYRSYMENYCEEEREALASPDPAAQAQLNQWTEIQDELKKRLITEDFFTWNLPNSTTTNTSTKEEEEVLLKYIGGVDMSFSKEDPSIACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLANLTTIGVGKNLHHVDGLTHSGVRQLLDAKENNNEDIIPLMGGSGSTWGVAMRSTPDTLKPIFISVGHCISLDTAVMIVKMTCKYRVPEPIRQADIRSRDYLQKHQSTCLLQRWQ
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccEEEEEEEEEEcccccEEEEEEEEEEccccEEEEEEEEEEEEccccccccHHHHcHHHHHHHHHHHHHHccccccEEEEEccccccccccccccEEEEEEccccEEEEEccccEEEccccccccHHHccccccccccEEcccccccEEEEEEEEcccccccEEEcccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccHHHHHHcHHHccccHHHHHHcccHHHHHHHHcccccccccHHHHHHHHHHHHHHHccccccccccccHHHHHHccccccccccEEEEEEEEEEEcccccEEEEEEEEEEccccEEEEEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHccccccccEEEEccccccccccccHHHHHHHEcccccHHHEHHEEEEcccccHHHHHHHccHHcccccccccEcccccEEEEEEEEcccccccEEEEccccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccccHHHHccc
Coil and Loop (DISEMBL)
eknsgvqqphlrrefhsipeqMSSCYRSYMENYCEEErealaspdpaaQAQLNQWTEIQDELKKRLITedfftwnlpnstttntstKEEEEVLLKYIGgvdmsfskedpsiacgcivvLDLQTLQIVYEDYSLLrlqvpyvpgflafreAPVLLSLLDNMKKranhfypqvlmvdgngllhprgfglaSHIGVLANlttigvgknlhhvdglthSGVRQLLdakennnediiplmggsgstwgvamrstpdtlkpIFISVGHCISLDTAVMIVKMTckyrvpepirqadiRSRDYLQKHQSTCLLQRWQ
Flexible Loop (DISEMBL)
eknsgvqqphlrrefhsipeqmsSCYRSYMENYCEEEREALASPDPAAQAQLNQWTEIQDELKKRLITEdfftwnlpnstttntstkeeEEVLLKYIGGVDMSFSKEDPSIACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLANLTTIGVGKNLHHVDGLTHSGVRQLLDAKENNNEDIIPLMGGSGSTWGVAMRSTPDTLKPIFISVGHCISLDTAVMIVKMTCKYRVPEPIRQADIRSRDYLQKHQSTCLLQRWQ
Low Complexity Region (SEG)
EKNSGVQQPHLRREFHSIPEQMSSCYRSYMENYCEEEREALASPDPAAQAQLNQWTEIQDELKKRLITEDFFTWNLPnstttntstkeeeeVLLKYIGGVDMSFSKEDPSIACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLANLTTIGVGKNLHHVDGLTHSGVRQLLDAKENNNEDIIPLMGGSGSTWGVAMRSTPDTLKPIFISVGHCISLDTAVMIVKMTCKYRVPEPIRQADIRSRDYLQKHQSTCLLQRWQ
Disordered region (IsUnstruct)
*************************Y**YM**********************NQWTEIQDELKKRLITEDFFTWNLPN************EVLLKYIGGVDMSFSKEDPSIACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLANLTTIGVGKNLHHVDGLTHSGVRQLLDAKENNNEDIIPLMGGSGSTWGVAMRSTPDTLKPIFISVGHCISLDTAVMIVKMTCKYRVPEPIRQADIRSRDYLQK***TCL*****
Disordered Region (DISOPRED)
***************************SYMENYCE**************AQLNQWTEIQDELKKRLITEDFFTWNLPNSTT******EEEEVLLKYIGGVDMSFSKEDPSIACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLANLTTIGVGKNLHHVDGLTHSGVR*********NEDIIPLMGGSGSTWGVAMRSTPDTLKPIFISVGHCISLDTAVMIVKMTCKYRVPEPIRQADIRSRDYL*************
Disordered Region (DISEMBL)
**********LRREFHSIPEQMSSCYRSYMENYCEEEREALASPDPAAQAQLNQWTEIQDELKKRLITEDFFTWNLPNST********EEEVLLKYIGGVDMSFSKEDPSIACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLANLTTIGVGKNLHHVDGLTHSGVRQLLDAKENNNEDIIPLMGGSGSTWGVAMRSTPDTLKPIFISVGHCISLDTAVMIVKMTCKYRVPEPIRQADIRSRDYLQKHQSTCLLQRWQ
Disordered Region (DISPRO)
************REFHSIPEQMSSCYRSYMENYCEEEREALASPDPAAQAQLNQWTEIQDELKKRLITEDFFTWNLPNSTTT**STKEEEEVLLKYIGGVDMSFSKEDPSIACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLANLTTIGVGKNLHHVDGLTHSGVRQLLDAK*NNNEDIIPLMGGSGSTWGVAMRSTPDTLKPIFISVGHCISLDTAVMIVKMTCKYRVPEPIRQADIRSRDYLQKHQST*****WQ
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
EKNSGVQQPHLRREFHSIPEQMSSCYRSYMENYCEEEREALASPDPAAQAQLNQWTEIQDELKKRLITEDFFTWNLPNSTTTNTSTKEEEEVLLKYIGGVDMSFSKEDPSIACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLANLTTIGVGKNLHHVDGLTHSGVRQLLDAKENNNEDIIPLMGGSGSTWGVAMRSTPDTLKPIFISVGHCISLDTAVMIVKMTCKYRVPEPIRQADIRSRDYLQKHQSTCLLQRWQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	309	2.2.26 [Sep-21-2011]
Q8C9A2	338	Endonuclease V OS=Mus mus	yes	no	0.763	0.698	0.433	1e-54
Q8N8Q3	282	Endonuclease V OS=Homo sa	yes	no	0.802	0.879	0.401	9e-52
Q10348	252	Putative endonuclease C1F	yes	no	0.650	0.797	0.369	2e-33
B8DZX0	228	Endonuclease V OS=Dictyog	yes	no	0.656	0.890	0.366	3e-32
B5YD80	228	Endonuclease V OS=Dictyog	yes	no	0.656	0.890	0.349	4e-31
O66824	222	Endonuclease V OS=Aquifex	yes	no	0.647	0.900	0.366	4e-29
B7K379	229	Endonuclease V OS=Cyanoth	yes	no	0.647	0.873	0.354	5e-29
Q3MEZ3	221	Endonuclease V OS=Anabaen	yes	no	0.624	0.873	0.355	1e-28
Q8YPV5	221	Endonuclease V OS=Nostoc	yes	no	0.624	0.873	0.355	1e-28
B2IWL4	221	Endonuclease V OS=Nostoc	yes	no	0.660	0.923	0.336	1e-27

>sp|Q8C9A2|ENDOV_MOUSE Endonuclease V OS=Mus musculus GN=Endov PE=1 SV=2

 Score =  213 bits (543), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 107/247 (43%), Positives = 152/247 (61%), Gaps = 11/247 (4%)

Query: 52  LNQWTEIQDELKKRLITEDFFTWNLPNSTTTNTSTKEEEEVLLKYIGGVDMSFSKEDPSI 111
           L+ W   Q  LK R++  D   W    S +            L+ +GGVD+SF K D   
Sbjct: 14  LSLWKGEQARLKARVVDRDTEAWQRDPSFSG-----------LQKVGGVDVSFVKGDSVR 62

Query: 112 ACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQV 171
           AC  +VVL    L++VYED  ++ L+ PYV GFLAFRE P L+ L+  ++++     PQV
Sbjct: 63  ACASLVVLSYPELKVVYEDSRMVGLKAPYVSGFLAFREVPFLVELVQRLQEKEPDLMPQV 122

Query: 172 LMVDGNGLLHPRGFGLASHIGVLANLTTIGVGKNLHHVDGLTHSGVRQLLDAKENNNEDI 231
           ++VDGNG+LH RGFG+A H+GVL  L  IGV K L  VDGL ++ + +          D 
Sbjct: 123 VLVDGNGVLHQRGFGVACHLGVLTELPCIGVAKKLLQVDGLENNALHKEKIVLLQAGGDT 182

Query: 232 IPLMGGSGSTWGVAMRSTPDTLKPIFISVGHCISLDTAVMIVKMTCKYRVPEPIRQADIR 291
            PL+G SG+  G+A+RS   + KP+++SVGH ISL+ AV +    C++R+PEPIRQADIR
Sbjct: 183 FPLIGSSGTVLGMALRSHDHSTKPLYVSVGHRISLEVAVRLTHHCCRFRIPEPIRQADIR 242

Query: 292 SRDYLQK 298
           SR+Y+++
Sbjct: 243 SREYIRR 249

Selectively cleaves DNA at the second phosphodiester bond 3' to hypoxanthine- and uracil-containing nucleotides. Shows higher activity towards single-stranded than double-stranded DNA and towards hypoxanthine than uracil.
Mus musculus (taxid: 10090)
EC: 3EC: .EC: 1EC: .EC: 2EC: 1EC: .EC: -

>sp|Q8N8Q3|ENDOV_HUMAN Endonuclease V OS=Homo sapiens GN=ENDOV PE=2 SV=1

 Score =  204 bits (518), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 104/259 (40%), Positives = 154/259 (59%), Gaps = 11/259 (4%)

Query: 40  ALASPDPAAQAQLNQWTEIQDELKKRLITEDFFTWNLPNSTTTNTSTKEEEEVLLKYIGG 99
           AL +     +  L+ W   Q  LK  ++  D   W    + +            L+ +GG
Sbjct: 2   ALEAAGGPPEETLSLWKREQARLKAHVVDRDTEAWQRDPAFSG-----------LQRVGG 50

Query: 100 VDMSFSKEDPSIACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDN 159
           VD+SF K D   AC  +VVL    L++VYE+  ++ L  PYV GFLAFRE P LL L+  
Sbjct: 51  VDVSFVKGDSVRACASLVVLSFPELEVVYEESRMVSLTAPYVSGFLAFREVPFLLELVQQ 110

Query: 160 MKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLANLTTIGVGKNLHHVDGLTHSGVRQ 219
           ++++     PQVL+VDGNG+LH RGFG+A H+GVL +L  +GV K L  VDGL ++ + +
Sbjct: 111 LREKEPGLMPQVLLVDGNGVLHHRGFGVACHLGVLTDLPCVGVAKKLLQVDGLENNALHK 170

Query: 220 LLDAKENNNEDIIPLMGGSGSTWGVAMRSTPDTLKPIFISVGHCISLDTAVMIVKMTCKY 279
                     D  PL+G SG+  G+A+RS   + +P++ISVGH +SL+ AV +    C++
Sbjct: 171 EKIRLLQTRGDSFPLLGDSGTVLGMALRSHDRSTRPLYISVGHRMSLEAAVRLTCCCCRF 230

Query: 280 RVPEPIRQADIRSRDYLQK 298
           R+PEP+RQADI SR++++K
Sbjct: 231 RIPEPVRQADICSREHIRK 249

Selectively cleaves DNA at the second phosphodiester bond 3' to hypoxanthine- and uracil-containing nucleotides. Shows higher activity towards single-stranded than double-stranded DNA and towards hypoxanthine than uracil.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|Q10348|YDA6_SCHPO Putative endonuclease C1F12.06c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC1F12.06c PE=3 SV=1

 Score =  143 bits (360), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 79/214 (36%), Positives = 133/214 (62%), Gaps = 13/214 (6%)

Query: 94  LKYIGGVDMSFSKEDPSIACGCIVVLDLQTLQIVYEDYSLL-RLQVPYVPGFLAFREAPV 152
           ++Y+ G+D+SF K  P  A   +V+ DL+   I+Y+DY  + +L+  YVPGFL+FRE   
Sbjct: 36  IRYVVGLDISFDKSSPK-AVSALVIYDLEQRMIIYKDYLCIEKLEEDYVPGFLSFREIKW 94

Query: 153 LLSLLDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLANLTTIGVGKNLHHVDGL 212
            L LL+++    + F   +++VDGNG+LHP GFGLA H+GVL NL  +GV KN  H  GL
Sbjct: 95  YLPLLNHI---PHQFRIDIILVDGNGVLHPVGFGLACHLGVLLNLPVVGVAKNYLHCVGL 151

Query: 213 THS------GVRQLLDAKENNNEDIIPLMGGSGSTWGVAMRSTPDTLKPIFISVGHCISL 266
           T S       +++ +  K  ++  +I  +  S    G A+ ++ ++ +P+++S+G+ ++L
Sbjct: 152 TESLDAHRETLKKHVLKKTTDHPILIHSIDQSSEILGAAVWTSSNSKRPVYVSIGNQMNL 211

Query: 267 DTAVMIVKM--TCKYRVPEPIRQADIRSRDYLQK 298
           + ++ +V+   +   RVPEPIRQADI ++  L +
Sbjct: 212 EQSIQLVQKCSSSHSRVPEPIRQADIYAKFVLSQ 245

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|B8DZX0|NFI_DICTD Endonuclease V OS=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) GN=nfi PE=3 SV=1

 Score =  139 bits (349), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 89/243 (36%), Positives = 135/243 (55%), Gaps = 40/243 (16%)

Query: 56  TEIQDELKKRLITEDFFTWNLPNSTTTNTSTKEEEEVLLKYIGGVDMSFSKEDPSIACGC 115
            ++Q+EL K++I ED F              KE     L+YIGGVD S   E      G 
Sbjct: 17  VKLQEELSKKIILEDKF--------------KE-----LRYIGGVDTSSLGEK---IVGI 54

Query: 116 IVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVLMVD 175
           I +L  +TL++V    +L  +  PY+PGFL+FRE PV+L   + +K +     P +L+ D
Sbjct: 55  ITILVFKTLELVEISVALSEVNFPYIPGFLSFREGPVILRAWEKLKIK-----PDLLIFD 109

Query: 176 GNGLLHPRGFGLASHIGVLANLTTIGVGKNLHHVDGLTHSGVRQLLDAKENNNEDIIPLM 235
           G G+ HPR  G+ASHIG + ++ +IG  KN+         G  +  D ++ + E I    
Sbjct: 110 GQGIAHPRRLGIASHIGYVLDVPSIGCAKNI-------LVGFYKEPDKRKGSFEYIY--- 159

Query: 236 GGSGSTWGVAMRSTPDTLKPIFISVGHCISLDTAV-MIVKMTCKYRVPEPIRQADIRSRD 294
              G   G A+R T D +KP+F+S+GH ISL+T++ +I+K + KYR+PEP+R A + S+ 
Sbjct: 160 -HKGEIVGAAVR-TKDNVKPVFVSLGHKISLNTSIDIILKTSTKYRIPEPVRLAHLYSKR 217

Query: 295 YLQ 297
            L 
Sbjct: 218 MLN 220

Selectively cleaves double-stranded DNA at the second phosphodiester bond 3' to a deoxyinosine leaving behind the intact lesion on the nicked DNA. Acts in DNA repair.

Dictyoglomus turgidum (strain Z-1310 / DSM 6724) (taxid: 515635)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 1

EC: .

EC: 7

>sp|B5YD80|NFI_DICT6 Endonuclease V OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) GN=nfi PE=3 SV=1

 Score =  135 bits (340), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 85/243 (34%), Positives = 131/243 (53%), Gaps = 40/243 (16%)

Query: 56  TEIQDELKKRLITEDFFTWNLPNSTTTNTSTKEEEEVLLKYIGGVDMSFSKEDPSIACGC 115
             +Q E+ +++I ED F                     L+Y+GGVD S S ED     G 
Sbjct: 17  VRLQKEISEKIIKEDAFKN-------------------LRYVGGVDTS-SIEDK--IAGV 54

Query: 116 IVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVLMVD 175
           IVVL+  TL+++     + ++  PY+PGFL+FRE P++L   +N+K +     P +L+ D
Sbjct: 55  IVVLEFNTLEVLEVSIEISQVNFPYIPGFLSFREGPIILKAWENLKIK-----PDLLIFD 109

Query: 176 GNGLLHPRGFGLASHIGVLANLTTIGVGKNLHHVDGLTHSGVRQLLDAKENNNEDIIPLM 235
           G G+ HPR  G+ASH+G + ++ +IG  K +         GV +  D K  + E I    
Sbjct: 110 GQGIAHPRRLGIASHVGYVLDVPSIGCAKKI-------LVGVYKEPDKKRGSFEYIYI-- 160

Query: 236 GGSGSTWGVAMRSTPDTLKPIFISVGHCISLDTAV-MIVKMTCKYRVPEPIRQADIRSRD 294
                  G  +R T D +KP+F+S+GH ISL T++ +I+K + KYR+PEP+R A I S+ 
Sbjct: 161 --DNEIVGAVVR-TKDNVKPVFVSLGHKISLSTSIEIILKTSTKYRLPEPVRLAHIYSKK 217

Query: 295 YLQ 297
            L 
Sbjct: 218 ALN 220

Selectively cleaves double-stranded DNA at the second phosphodiester bond 3' to a deoxyinosine leaving behind the intact lesion on the nicked DNA. Acts in DNA repair.

Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) (taxid: 309799)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 1

EC: .

EC: 7

>sp|O66824|NFI_AQUAE Endonuclease V OS=Aquifex aeolicus (strain VF5) GN=nfi PE=3 SV=3

 Score =  128 bits (322), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 88/240 (36%), Positives = 122/240 (50%), Gaps = 40/240 (16%)

Query: 52  LNQWTEIQDELKKRLITEDFFTWNLPNSTTTNTSTKEEEEVLLKYIGGVDMSFSK--EDP 109
           L +  +IQ E  K++I  D F               E+ E     IGG+D++F K  E+P
Sbjct: 6   LEKLKKIQLECAKKVIARDDF---------------EKVET----IGGMDLTFEKINENP 46

Query: 110 SIACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYP 169
           + A   +VV++L+TL+ VY+      +  PY+P FLAFRE P+LL L +  K +     P
Sbjct: 47  TRAWASLVVVELKTLKPVYQHVVKDIVDFPYIPTFLAFREMPLLLKLYETAKVK-----P 101

Query: 170 QVLMVDGNGLLHPRGFGLASHIGVLANLTTIGVGKNLHHVDGLTHSGVRQLLDAKENN-N 228
            V  +DG G+ HPRG G+ASH GV     T+GV K+            +    AKE    
Sbjct: 102 DVYFIDGQGIAHPRGCGIASHFGVETGEVTVGVAKS------------KLFGYAKEPAPQ 149

Query: 229 EDIIPLMGGSGSTWGVAMRSTPDTLKPIFISVGHCISLDTAVMIVKMTCKYRVPEPIRQA 288
                 +   G   G  +R T D   P+++SVGH ISL TA+ +V  T KYRVPEP R A
Sbjct: 150 RGSYTYLKYKGKIIGAVVR-TKDNTAPVYVSVGHRISLKTAIDLVLKTSKYRVPEPTRLA 208

Selectively cleaves double-stranded DNA at the second phosphodiester bond 3' to a deoxyinosine leaving behind the intact lesion on the nicked DNA. Acts in DNA repair.

Aquifex aeolicus (strain VF5) (taxid: 224324)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 1

EC: .

EC: 7

>sp|B7K379|NFI_CYAP8 Endonuclease V OS=Cyanothece sp. (strain PCC 8801) GN=nfi PE=3 SV=1

 Score =  128 bits (322), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 85/240 (35%), Positives = 127/240 (52%), Gaps = 40/240 (16%)

Query: 52  LNQWTEIQDELKKRLITEDFFTWNLPNSTTTNTSTKEEEEVLLKYIGGVDMSFSKEDPSI 111
           L +   IQ+ LKK++I ED F+                    + Y+ GVD+ F +++  +
Sbjct: 13  LEEAKTIQENLKKKVILEDQFSE-------------------VNYVAGVDVGF-RDNYQL 52

Query: 112 ACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQV 171
               I VL    L++V    + L    PY+PGFL+FRE P +L  L+ +K       P +
Sbjct: 53  TQAAIAVLSFPKLELVETQIACLPTTFPYIPGFLSFREIPAILKALEKLK-----IPPNI 107

Query: 172 LMVDGNGLLHPRGFGLASHIGVLANLTTIGVGKNLHHVDGLTHSGVRQLLDAKENNNEDI 231
           ++ DG G+ HPR  G+ASH+GVL +L TIGV K+L         G  + +  ++ N + +
Sbjct: 108 ILCDGQGIAHPRRLGIASHLGVLIDLPTIGVAKSL-------LVGKHEEVPPEKGNWQPL 160

Query: 232 IPLMGGSGSTWGVAMRSTPDTLKPIFISVGHCISLDTAVMIVKMTC--KYRVPEPIRQAD 289
           I      G   GV +RS  + +KPI++S+GH ISL TA+  V M C  KYR+PE  R AD
Sbjct: 161 I----DKGEIIGVVLRSRTN-IKPIYVSIGHKISLPTAIDYV-MQCLTKYRLPETTRWAD 214

Selectively cleaves double-stranded DNA at the second phosphodiester bond 3' to a deoxyinosine leaving behind the intact lesion on the nicked DNA. Acts in DNA repair.

Cyanothece sp. (strain PCC 8801) (taxid: 41431)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 1

EC: .

EC: 7

>sp|Q3MEZ3|NFI_ANAVT Endonuclease V OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=nfi PE=3 SV=1

 Score =  127 bits (319), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 84/236 (35%), Positives = 126/236 (53%), Gaps = 43/236 (18%)

Query: 58  IQDELKKRLITEDFFTWNLPNSTTTNTSTKEEEEVLLKYIGGVDMSFSKEDPSIACGCIV 117
           IQ+EL+ ++IT+D FT  +                  +Y+ GVDM F + D +I+   + 
Sbjct: 19  IQEELRHQVITQDQFTQPV------------------QYVAGVDMGF-EADGTISRAAVA 59

Query: 118 VLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVLMVDGN 177
           VL    LQ+V    +      PY+PGFL+FRE P +L  L+ ++ +     P +++ DG 
Sbjct: 60  VLSFPDLQVVETSLAYRPTSFPYIPGFLSFREIPAVLDALEKIQTK-----PDIILCDGQ 114

Query: 178 GLLHPRGFGLASHIGVLANLTTIGVGKNL---HHVDGLTHSGVRQLLDAKENNNEDIIPL 234
           G+ HPR  G+ASH+GVL N+ TIGV K+L    H          +L D K +      PL
Sbjct: 115 GIAHPRRLGIASHLGVLLNIPTIGVAKSLLIGRH---------EELADTKGSWQ----PL 161

Query: 235 MGGSGSTWGVAMRSTPDTLKPIFISVGHCISLDTAV-MIVKMTCKYRVPEPIRQAD 289
           +   G   G  +R T   +KP+++S GH ISL TA+  +++ T KYR+PE  R AD
Sbjct: 162 I-HRGEIIGAVLR-TRVGVKPVYVSSGHKISLPTAIDYVLRCTPKYRLPETTRVAD 215

Selectively cleaves double-stranded DNA at the second phosphodiester bond 3' to a deoxyinosine leaving behind the intact lesion on the nicked DNA. Acts in DNA repair.

Anabaena variabilis (strain ATCC 29413 / PCC 7937) (taxid: 240292)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 1

EC: .

EC: 7

>sp|Q8YPV5|NFI_NOSS1 Endonuclease V OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=nfi PE=3 SV=1

 Score =  127 bits (318), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 84/236 (35%), Positives = 126/236 (53%), Gaps = 43/236 (18%)

Query: 58  IQDELKKRLITEDFFTWNLPNSTTTNTSTKEEEEVLLKYIGGVDMSFSKEDPSIACGCIV 117
           IQ+EL+ ++ITED FT  +                  +Y+ GVDM F + D +I+   + 
Sbjct: 19  IQEELRHQVITEDQFTQPV------------------QYVAGVDMGF-EADGTISRAAVA 59

Query: 118 VLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVLMVDGN 177
           VL    LQ++  + +      PY+PGFL+FRE P +L  L  ++ +     P +++ DG 
Sbjct: 60  VLSFPDLQVIETNLAYRPTSFPYIPGFLSFREIPAVLDALAKVQTK-----PDIILCDGQ 114

Query: 178 GLLHPRGFGLASHIGVLANLTTIGVGKNL---HHVDGLTHSGVRQLLDAKENNNEDIIPL 234
           G+ HPR  G+ASH+GVL N+ TIGV K+L    H          +L D K +      PL
Sbjct: 115 GIAHPRRLGIASHLGVLLNIPTIGVAKSLLIGKH---------EELADTKGSWQ----PL 161

Query: 235 MGGSGSTWGVAMRSTPDTLKPIFISVGHCISLDTAV-MIVKMTCKYRVPEPIRQAD 289
           +   G   G  +R T   +KP+++S GH ISL TA+  +++ T KYR+PE  R AD
Sbjct: 162 I-HRGEIIGAVLR-TRVGVKPVYVSSGHKISLPTAIDYVLRCTPKYRLPETTRVAD 215

Selectively cleaves double-stranded DNA at the second phosphodiester bond 3' to a deoxyinosine leaving behind the intact lesion on the nicked DNA. Acts in DNA repair.

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 1

EC: .

EC: 7

>sp|B2IWL4|NFI_NOSP7 Endonuclease V OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=nfi PE=3 SV=1

 Score =  124 bits (311), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 81/241 (33%), Positives = 130/241 (53%), Gaps = 37/241 (15%)

Query: 50  AQLNQWTEIQDELKKRLITEDFFTWNLPNSTTTNTSTKEEEEVLLKYIGGVDMSFSKEDP 109
           + L +   IQ++L+ ++ITED                  + E  ++Y+ GVDM F + D 
Sbjct: 11  STLEEAIVIQEKLRDQVITED------------------QLEEPIQYVAGVDMGF-EADG 51

Query: 110 SIACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYP 169
           +I+   + VL    LQ++    +      PYVPGFL+FRE P +L  L+ ++       P
Sbjct: 52  TISRAAVAVLSFPDLQVIETSLAHRPTTFPYVPGFLSFREIPAVLDALEKIQTT-----P 106

Query: 170 QVLMVDGNGLLHPRGFGLASHIGVLANLTTIGVGKNLHHVDGLTHSGVRQLLDAKENNNE 229
            +++ DG G+ HPR  G+ASH+G+L ++ TIGV K+          G  + L   + +++
Sbjct: 107 NIILCDGQGIAHPRRLGIASHLGLLIDMPTIGVAKS-------RLVGKYEELAETKGSSQ 159

Query: 230 DIIPLMGGSGSTWGVAMRSTPDTLKPIFISVGHCISLDTAV-MIVKMTCKYRVPEPIRQA 288
            +I     +G T GV +RS    +KP++IS GH ISL TA+  +++ T KYR+PE  R A
Sbjct: 160 PLI----YNGETVGVVLRSR-TGVKPLYISSGHRISLPTAIDYVLRCTPKYRLPETTRIA 214

Query: 289 D 289
           D
Sbjct: 215 D 215

Selectively cleaves double-stranded DNA at the second phosphodiester bond 3' to a deoxyinosine leaving behind the intact lesion on the nicked DNA. Acts in DNA repair.

Nostoc punctiforme (strain ATCC 29133 / PCC 73102) (taxid: 63737)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 1

EC: .

EC: 7

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	309
225429878	285	PREDICTED: endonuclease V-like [Vitis vi	0.902	0.978	0.632	1e-101
296081816	291	unnamed protein product [Vitis vinifera]	0.902	0.958	0.619	4e-99
356552555	268	PREDICTED: endonuclease V [Glycine max]	0.822	0.947	0.647	4e-95
18417747	277	deoxyribonuclease V [Arabidopsis thalian	0.796	0.888	0.661	1e-92
297798856	277	endonuclease V family protein [Arabidops	0.796	0.888	0.653	7e-92
357123328	270	PREDICTED: endonuclease V-like [Brachypo	0.818	0.937	0.634	1e-91
449442214	304	PREDICTED: endonuclease V-like [Cucumis	0.809	0.822	0.626	1e-91
218198700	272	hypothetical protein OsI_24016 [Oryza sa	0.809	0.919	0.644	8e-91
222636042	272	hypothetical protein OsJ_22269 [Oryza sa	0.809	0.919	0.64	2e-90
242096626	268	hypothetical protein SORBIDRAFT_10g02651	0.799	0.921	0.636	6e-90

>gi|225429878|ref|XP_002281010.1| PREDICTED: endonuclease V-like [Vitis vinifera]

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 179/283 (63%), Positives = 218/283 (77%), Gaps = 4/283 (1%)

Query: 22  MSSCYRSYMENYCEEEREALASPDPAAQAQLNQWTEIQDELKKRLITEDFFTWNLPNSTT 81
           M++   S+   +  E+R +       +   +  W ++QD LK+RL+TED FTW LP  T+
Sbjct: 1   MTATLCSFNLMFSMEKRASPEISSAESHQFIENWIQVQDSLKRRLVTEDDFTWKLPKPTS 60

Query: 82  TNTSTKEEEEV----LLKYIGGVDMSFSKEDPSIACGCIVVLDLQTLQIVYEDYSLLRLQ 137
           T T     EE     +LKY+GGVD+SFSK+DPS+ACG IVVLDL TL++VY+DYS++RLQ
Sbjct: 61  TATVRGRIEEGDDKHVLKYVGGVDVSFSKDDPSVACGTIVVLDLGTLEVVYDDYSVVRLQ 120

Query: 138 VPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLANL 197
            PYVPGFLA REAPVLL LL+ MK  A+ FYPQ+LMVDGNGLLHPRGFGLA H+GVLAN+
Sbjct: 121 TPYVPGFLALREAPVLLKLLEKMKNSAHPFYPQLLMVDGNGLLHPRGFGLACHLGVLANI 180

Query: 198 TTIGVGKNLHHVDGLTHSGVRQLLDAKENNNEDIIPLMGGSGSTWGVAMRSTPDTLKPIF 257
            TIG+GK LHHVDGLT SGVR+LL+AK N  ED I L G SG T GVAMRST  +LKPIF
Sbjct: 181 PTIGIGKTLHHVDGLTQSGVRELLEAKGNLTEDFIALTGYSGRTLGVAMRSTESSLKPIF 240

Query: 258 ISVGHCISLDTAVMIVKMTCKYRVPEPIRQADIRSRDYLQKHQ 300
           +S+GH +SLDTA++I+KMTC YRVPEP+RQADIRSR YLQKHQ
Sbjct: 241 VSIGHRVSLDTAIIIIKMTCNYRVPEPVRQADIRSRQYLQKHQ 283

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296081816|emb|CBI20821.3| unnamed protein product [Vitis vinifera]

 Score =  367 bits (942), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 179/289 (61%), Positives = 218/289 (75%), Gaps = 10/289 (3%)

Query: 22  MSSCYRSYMENYCEEEREALASPDPAAQAQLNQWTEIQDELKKRLITEDFFTWNLPNSTT 81
           M++   S+   +  E+R +       +   +  W ++QD LK+RL+TED FTW LP  T+
Sbjct: 1   MTATLCSFNLMFSMEKRASPEISSAESHQFIENWIQVQDSLKRRLVTEDDFTWKLPKPTS 60

Query: 82  TNTSTKEEEEV----LLKYIGGVDMSFSKEDPSIACGCIVVLDLQTLQIVYEDYSLLRLQ 137
           T T     EE     +LKY+GGVD+SFSK+DPS+ACG IVVLDL TL++VY+DYS++RLQ
Sbjct: 61  TATVRGRIEEGDDKHVLKYVGGVDVSFSKDDPSVACGTIVVLDLGTLEVVYDDYSVVRLQ 120

Query: 138 VPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVLMVDGNGLLHPRG------FGLASHI 191
            PYVPGFLA REAPVLL LL+ MK  A+ FYPQ+LMVDGNGLLHPRG      FGLA H+
Sbjct: 121 TPYVPGFLALREAPVLLKLLEKMKNSAHPFYPQLLMVDGNGLLHPRGKCTFTSFGLACHL 180

Query: 192 GVLANLTTIGVGKNLHHVDGLTHSGVRQLLDAKENNNEDIIPLMGGSGSTWGVAMRSTPD 251
           GVLAN+ TIG+GK LHHVDGLT SGVR+LL+AK N  ED I L G SG T GVAMRST  
Sbjct: 181 GVLANIPTIGIGKTLHHVDGLTQSGVRELLEAKGNLTEDFIALTGYSGRTLGVAMRSTES 240

Query: 252 TLKPIFISVGHCISLDTAVMIVKMTCKYRVPEPIRQADIRSRDYLQKHQ 300
           +LKPIF+S+GH +SLDTA++I+KMTC YRVPEP+RQADIRSR YLQKHQ
Sbjct: 241 SLKPIFVSIGHRVSLDTAIIIIKMTCNYRVPEPVRQADIRSRQYLQKHQ 289

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356552555|ref|XP_003544632.1| PREDICTED: endonuclease V [Glycine max]

 Score =  353 bits (907), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 173/267 (64%), Positives = 212/267 (79%), Gaps = 13/267 (4%)

Query: 37  EREALASPDPAAQAQLNQ-----WTEIQDELKKRLITEDFFTWNLPNSTTTNTSTKEEEE 91
           E+++   P+ A+Q++ +      W   Q+ L+++LITED F W L         +KEEE 
Sbjct: 2   EKKSPEPPEEASQSRDSSRDNQTWITAQNILREKLITEDCFAWKL------QAGSKEEEA 55

Query: 92  VLLKYIGGVDMSFSKEDPSIACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAP 151
             L+Y+GGVD+SFSK+DPS ACG +VVLD  TLQ++Y+D+SL+ LQVPYVPGFLAFREAP
Sbjct: 56  --LRYVGGVDISFSKDDPSRACGTLVVLDFHTLQVLYQDFSLVTLQVPYVPGFLAFREAP 113

Query: 152 VLLSLLDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLANLTTIGVGKNLHHVDG 211
           VLL LL+ MK+  N FYPQ+LMVDGNG+LHPRGFGLA HIGV ANL TIG+GKNLHHVDG
Sbjct: 114 VLLQLLEKMKRSNNPFYPQLLMVDGNGILHPRGFGLACHIGVEANLPTIGIGKNLHHVDG 173

Query: 212 LTHSGVRQLLDAKENNNEDIIPLMGGSGSTWGVAMRSTPDTLKPIFISVGHCISLDTAVM 271
           LTHS VR+LL A+EN +ED I L+G SG  WGVAMRST  ++KPIFIS+GH ISL TA+M
Sbjct: 174 LTHSRVRELLGAEENCSEDFINLVGCSGHIWGVAMRSTQGSIKPIFISIGHKISLQTAIM 233

Query: 272 IVKMTCKYRVPEPIRQADIRSRDYLQK 298
           IV+MTCKYRVPEPIRQADIRSRDY++K
Sbjct: 234 IVQMTCKYRVPEPIRQADIRSRDYIRK 260

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18417747|ref|NP_567868.1| deoxyribonuclease V [Arabidopsis thaliana] gi|21593853|gb|AAM65820.1| unknown [Arabidopsis thaliana] gi|51968464|dbj|BAD42924.1| unknown protein [Arabidopsis thaliana] gi|51972029|dbj|BAD44679.1| unknown protein [Arabidopsis thaliana] gi|119360075|gb|ABL66766.1| At4g31150 [Arabidopsis thaliana] gi|332660465|gb|AEE85865.1| deoxyribonuclease V [Arabidopsis thaliana]

 Score =  345 bits (885), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 166/251 (66%), Positives = 199/251 (79%), Gaps = 5/251 (1%)

Query: 51  QLNQWTEIQDELKKRLITEDFFTWNLPNSTTTNTSTKEEEEVLLKYIGGVDMSFSKEDPS 110
           QL +WTE QDELKK+LI  D FTW L +ST  +  ++     +LKY+GGVDMSF KED S
Sbjct: 16  QLEKWTEEQDELKKKLIAYDDFTWKLSSSTELSQGSE-----ILKYVGGVDMSFCKEDSS 70

Query: 111 IACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQ 170
           +AC C+VVL+L +L++V+ D+SLLRL VPYVPGFLAFREAPVLL +L  M+   + FYPQ
Sbjct: 71  VACACLVVLELPSLRVVHHDFSLLRLHVPYVPGFLAFREAPVLLQILQKMRDEKHPFYPQ 130

Query: 171 VLMVDGNGLLHPRGFGLASHIGVLANLTTIGVGKNLHHVDGLTHSGVRQLLDAKENNNED 230
           VLMVDGNG+LHPRGFGLA H+GVLA+L TIGVGKNLHHVDGL  S V+Q L  + N +E 
Sbjct: 131 VLMVDGNGILHPRGFGLACHLGVLAHLPTIGVGKNLHHVDGLNQSEVKQSLQLQINEHEQ 190

Query: 231 IIPLMGGSGSTWGVAMRSTPDTLKPIFISVGHCISLDTAVMIVKMTCKYRVPEPIRQADI 290
            I L+G SG TWGV  R T  +LKPI++SVGH ISLD+AV +VK+TCKYRVPEPIRQADI
Sbjct: 191 TITLVGNSGITWGVGFRPTLSSLKPIYVSVGHRISLDSAVEVVKITCKYRVPEPIRQADI 250

Query: 291 RSRDYLQKHQS 301
           RSR YLQKHQ+
Sbjct: 251 RSRAYLQKHQT 261

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297798856|ref|XP_002867312.1| endonuclease V family protein [Arabidopsis lyrata subsp. lyrata] gi|297313148|gb|EFH43571.1| endonuclease V family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  343 bits (879), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 164/251 (65%), Positives = 199/251 (79%), Gaps = 5/251 (1%)

Query: 51  QLNQWTEIQDELKKRLITEDFFTWNLPNSTTTNTSTKEEEEVLLKYIGGVDMSFSKEDPS 110
           QL +W E QD+LKK+LI  D FTW L +S   +  ++     +LKY+GGVDMSF KED S
Sbjct: 16  QLEKWIEEQDQLKKKLIAYDDFTWKLSSSMELSHGSE-----ILKYVGGVDMSFCKEDSS 70

Query: 111 IACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQ 170
           +AC C+VVL+L +L++V+ D+SLLRL VPYVPGFLAFREAPVLL +L  M+   + FYPQ
Sbjct: 71  VACACLVVLELPSLRVVHHDFSLLRLHVPYVPGFLAFREAPVLLQILQKMRDDKHPFYPQ 130

Query: 171 VLMVDGNGLLHPRGFGLASHIGVLANLTTIGVGKNLHHVDGLTHSGVRQLLDAKENNNED 230
           VLMVDGNG+LHPRGFGLA H+GVLA+L TIGVGKNLHHVDGL  S VR+ L  KEN +E 
Sbjct: 131 VLMVDGNGILHPRGFGLACHLGVLAHLPTIGVGKNLHHVDGLNQSEVRRSLQLKENEHEQ 190

Query: 231 IIPLMGGSGSTWGVAMRSTPDTLKPIFISVGHCISLDTAVMIVKMTCKYRVPEPIRQADI 290
           +I L+G SG TWGV +R T  +LKPI++SVGH ISLD+AV IVKMTCKYRVPEPIRQ D+
Sbjct: 191 VITLVGNSGFTWGVGLRPTLSSLKPIYVSVGHRISLDSAVKIVKMTCKYRVPEPIRQVDM 250

Query: 291 RSRDYLQKHQS 301
           RSR YLQ+HQ+
Sbjct: 251 RSRAYLQEHQT 261

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357123328|ref|XP_003563363.1| PREDICTED: endonuclease V-like [Brachypodium distachyon]

 Score =  342 bits (877), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 163/257 (63%), Positives = 201/257 (78%), Gaps = 4/257 (1%)

Query: 45  DPAAQAQLNQWTEIQDELKKRLITEDFFTWNLPNSTTTNTSTKEEEEVLLKYIGGVDMSF 104
           +PA Q Q  +WT  QD LK RLI ED F W+LP     + S + +    LKY+GGVD+SF
Sbjct: 15  EPALQKQ--EWTRTQDVLKSRLILEDEFEWSLP--CANSNSDQSDARGKLKYVGGVDISF 70

Query: 105 SKEDPSIACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRA 164
            KEDPS AC  +VVLD  TL+IV+E++ L+R+QVPY+PGFLAFREAP+LL +L+ MK  A
Sbjct: 71  LKEDPSTACAAVVVLDANTLEIVHEEFDLVRMQVPYIPGFLAFREAPILLGVLEKMKTNA 130

Query: 165 NHFYPQVLMVDGNGLLHPRGFGLASHIGVLANLTTIGVGKNLHHVDGLTHSGVRQLLDAK 224
           +HFYPQ+LMVDGNGLLHPRGFGLA H+GVLA++ TIGVGKNLHHVDGL  S +R+ L+AK
Sbjct: 131 HHFYPQLLMVDGNGLLHPRGFGLACHLGVLADMPTIGVGKNLHHVDGLNQSEIRRKLEAK 190

Query: 225 ENNNEDIIPLMGGSGSTWGVAMRSTPDTLKPIFISVGHCISLDTAVMIVKMTCKYRVPEP 284
           EN N++ IPL G SG TWG AMRS P + KPI+IS+GH ISLD+A+ IVK   KYRVPEP
Sbjct: 191 ENCNKEFIPLTGQSGMTWGAAMRSCPGSSKPIYISIGHRISLDSAIGIVKYCSKYRVPEP 250

Query: 285 IRQADIRSRDYLQKHQS 301
            RQADIRS+ +LQKH++
Sbjct: 251 TRQADIRSKVFLQKHEN 267

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449442214|ref|XP_004138877.1| PREDICTED: endonuclease V-like [Cucumis sativus] gi|449499610|ref|XP_004160863.1| PREDICTED: endonuclease V-like [Cucumis sativus]

 Score =  342 bits (877), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 168/268 (62%), Positives = 202/268 (75%), Gaps = 18/268 (6%)

Query: 35  EEEREA--LASPDPAAQAQLNQWTEIQDELKKRLITEDFFTWNLPNSTTTNTSTKEEEEV 92
           EEE++    +     +  ++  W E QD LKK+LI ED    N  +              
Sbjct: 3   EEEKQVKPYSEASTTSSVEIQNWIEAQDLLKKKLIKEDDLEGNGDD-------------- 48

Query: 93  LLKYIGGVDMSFSKEDPSIACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPV 152
            LKY+GGVD+SF KED S+ACG +VV+DLQTLQ+VY+D+SL  +QVPYVPGFLAFREAPV
Sbjct: 49  -LKYVGGVDISFLKEDSSVACGTLVVMDLQTLQVVYDDFSLATVQVPYVPGFLAFREAPV 107

Query: 153 LLSLLDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLANLTTIGVGKNLHHVDGL 212
           LL LL+ MKKRA   YPQ+LMVDGNG+LHPRGFGLASH+GVLANL TIG+GKNLHHVDGL
Sbjct: 108 LLELLERMKKRAPLLYPQLLMVDGNGILHPRGFGLASHLGVLANLPTIGIGKNLHHVDGL 167

Query: 213 THSGVRQLLDAKENNNEDIIPLMGGSGSTWGVAMRSTPDTLKPIFISVGHCISLDTAVMI 272
           T S VRQLL +   NN+ II L G SG  WGVAMRST D+LKPI++S+GH +SLDTA+ I
Sbjct: 168 TQSSVRQLL-SDGKNNDSIITLKGISGCIWGVAMRSTVDSLKPIYVSIGHRVSLDTAIRI 226

Query: 273 VKMTCKYRVPEPIRQADIRSRDYLQKHQ 300
           VK+TC +RVPEPIRQADIRSR+YL+K Q
Sbjct: 227 VKITCTFRVPEPIRQADIRSREYLRKFQ 254

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218198700|gb|EEC81127.1| hypothetical protein OsI_24016 [Oryza sativa Indica Group]

 Score =  339 bits (870), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 161/250 (64%), Positives = 195/250 (78%)

Query: 51  QLNQWTEIQDELKKRLITEDFFTWNLPNSTTTNTSTKEEEEVLLKYIGGVDMSFSKEDPS 110
           Q  +W + QD LK +LI ED F WNLP+  + +  +    +  LKYIGGVD+SFSKEDPS
Sbjct: 19  QKQEWAKTQDMLKSKLILEDDFGWNLPSMGSNSDQSNANNKGNLKYIGGVDISFSKEDPS 78

Query: 111 IACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQ 170
            AC  +VVLD  TL++V+E++ ++RLQVPY+PGFLAFREAP+LL LL+ MK    HFYPQ
Sbjct: 79  TACAALVVLDAGTLEVVHEEFDVVRLQVPYIPGFLAFREAPILLGLLEKMKTNNQHFYPQ 138

Query: 171 VLMVDGNGLLHPRGFGLASHIGVLANLTTIGVGKNLHHVDGLTHSGVRQLLDAKENNNED 230
           VLMVDGNGLLHPRGFGLA H+GVLA+L TIGVGKNLHHVDGL  S +R+ L+AKEN N++
Sbjct: 139 VLMVDGNGLLHPRGFGLACHLGVLADLPTIGVGKNLHHVDGLNQSELRRQLEAKENCNKE 198

Query: 231 IIPLMGGSGSTWGVAMRSTPDTLKPIFISVGHCISLDTAVMIVKMTCKYRVPEPIRQADI 290
           +I L G SG+TWG AMRS P   KPI+ISVGH ISLD+A+ IVK    YR+PEPIRQADI
Sbjct: 199 LILLTGQSGTTWGAAMRSCPGLSKPIYISVGHRISLDSAIGIVKFCSNYRIPEPIRQADI 258

Query: 291 RSRDYLQKHQ 300
           RS+  LQKHQ
Sbjct: 259 RSKVLLQKHQ 268

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222636042|gb|EEE66174.1| hypothetical protein OsJ_22269 [Oryza sativa Japonica Group]

 Score =  338 bits (867), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 160/250 (64%), Positives = 195/250 (78%)

Query: 51  QLNQWTEIQDELKKRLITEDFFTWNLPNSTTTNTSTKEEEEVLLKYIGGVDMSFSKEDPS 110
           Q  +W + QD LK +LI ED F WNLP+  + +  +    +  LKYIGGVD+SFSKEDPS
Sbjct: 19  QKQEWAKTQDMLKSKLILEDDFGWNLPSMGSNSDQSNANNKGNLKYIGGVDISFSKEDPS 78

Query: 111 IACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQ 170
            AC  +VVLD  TL++V+E++ ++RLQVPY+PGFLAFREAP+LL LL+ MK    HFYPQ
Sbjct: 79  TACAALVVLDAGTLEVVHEEFDVVRLQVPYIPGFLAFREAPILLGLLEKMKTNNQHFYPQ 138

Query: 171 VLMVDGNGLLHPRGFGLASHIGVLANLTTIGVGKNLHHVDGLTHSGVRQLLDAKENNNED 230
           VLMVDGNGLLHPRGFGLA H+GVLA+L TIGVGKNLHHVDGL  S +R+ L+AKEN N++
Sbjct: 139 VLMVDGNGLLHPRGFGLACHLGVLADLPTIGVGKNLHHVDGLNQSELRRQLEAKENCNKE 198

Query: 231 IIPLMGGSGSTWGVAMRSTPDTLKPIFISVGHCISLDTAVMIVKMTCKYRVPEPIRQADI 290
           +I L G SG+TWG AM S P   KPI+ISVGH ISLD+A+ IVK    YR+PEPIRQADI
Sbjct: 199 LILLTGQSGTTWGAAMCSCPSLSKPIYISVGHRISLDSAIGIVKFCSNYRIPEPIRQADI 258

Query: 291 RSRDYLQKHQ 300
           RS+ +LQKHQ
Sbjct: 259 RSKVFLQKHQ 268

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242096626|ref|XP_002438803.1| hypothetical protein SORBIDRAFT_10g026510 [Sorghum bicolor] gi|241917026|gb|EER90170.1| hypothetical protein SORBIDRAFT_10g026510 [Sorghum bicolor]

 Score =  337 bits (863), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 159/250 (63%), Positives = 199/250 (79%), Gaps = 3/250 (1%)

Query: 51  QLNQWTEIQDELKKRLITEDFFTWNLPNSTTTNTSTKEEEEVLLKYIGGVDMSFSKEDPS 110
           Q  +W + QD LK +LI ED F W+LP   +  + + E E   LKYIGG D+SF KEDP+
Sbjct: 18  QKQEWIKTQDMLKSKLILEDEFAWSLP---SVGSGSDEHERCKLKYIGGTDISFLKEDPA 74

Query: 111 IACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQ 170
            AC  +VVL+  TL++V+E+++++RLQVPY+PGFLAFREAPVLL LL+ +K  A HFYPQ
Sbjct: 75  TACAAVVVLNADTLEVVHEEFNVVRLQVPYIPGFLAFREAPVLLGLLEKVKINAPHFYPQ 134

Query: 171 VLMVDGNGLLHPRGFGLASHIGVLANLTTIGVGKNLHHVDGLTHSGVRQLLDAKENNNED 230
           +LMVDGNGLLHPRGFGLA H+GVLA++ TIGVGKNLHHVDGL  S VR+LL++KEN N++
Sbjct: 135 LLMVDGNGLLHPRGFGLACHLGVLADVPTIGVGKNLHHVDGLNQSEVRRLLESKENCNKE 194

Query: 231 IIPLMGGSGSTWGVAMRSTPDTLKPIFISVGHCISLDTAVMIVKMTCKYRVPEPIRQADI 290
           +I L G SG+ WG AMRS P +LKPI+ISVGH ISLD+A++IVK  CKYRVPEP RQADI
Sbjct: 195 LILLTGQSGTKWGTAMRSCPGSLKPIYISVGHRISLDSAMVIVKSCCKYRVPEPTRQADI 254

Query: 291 RSRDYLQKHQ 300
           RS+ +LQK Q
Sbjct: 255 RSKAFLQKLQ 264

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	309
TAIR|locus:2126291	277	AT4G31150 [Arabidopsis thalian	0.841	0.938	0.626	1.4e-85
DICTYBASE|DDB_G0273907	322	DDB_G0273907 "endonuclease V"	0.537	0.515	0.454	8.8e-59
DICTYBASE|DDB_G0273165	322	DDB_G0273165 "endonuclease V"	0.537	0.515	0.454	8.8e-59
UNIPROTKB|E1C197	285	ENDOV "Uncharacterized protein	0.789	0.856	0.435	3.1e-51
UNIPROTKB|E2R813	288	ENDOV "Uncharacterized protein	0.799	0.857	0.425	4e-51
UNIPROTKB|F1RZ91	285	LOC100525423 "Uncharacterized	0.663	0.719	0.473	2.5e-49
UNIPROTKB|F1RZA7	302	F1RZA7 "Uncharacterized protei	0.663	0.678	0.473	2.5e-49
MGI|MGI:2444688	338	Endov "endonuclease V" [Mus mu	0.763	0.698	0.429	4.1e-49
UNIPROTKB|Q8N8Q3	282	ENDOV "Endonuclease V" [Homo s	0.802	0.879	0.401	2.6e-47
UNIPROTKB|Q1JQE5	215	LOC526597 "Uncharacterized pro	0.530	0.762	0.511	9.6e-41

TAIR|locus:2126291 AT4G31150 [Arabidopsis thaliana (taxid:3702)]

 Score = 856 (306.4 bits), Expect = 1.4e-85, P = 1.4e-85
 Identities = 166/265 (62%), Positives = 199/265 (75%)

Query:    37 EREALASPDPAAQAQLNQWTEIQDELKKRLITEDFFTWNLPXXXXXXXXXXXXXXVLLKY 96
             + E  +S   ++  QL +WTE QDELKK+LI  D FTW L                +LKY
Sbjct:     2 DSEGASSESSSSGDQLEKWTEEQDELKKKLIAYDDFTWKLSSSTELSQGSE-----ILKY 56

Query:    97 IGGVDMSFSKEDPSIACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSL 156
             +GGVDMSF KED S+AC C+VVL+L +L++V+ D+SLLRL VPYVPGFLAFREAPVLL +
Sbjct:    57 VGGVDMSFCKEDSSVACACLVVLELPSLRVVHHDFSLLRLHVPYVPGFLAFREAPVLLQI 116

Query:   157 LDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLANLTTIGVGKNLHHVDGLTHSG 216
             L  M+   + FYPQVLMVDGNG+LHPRGFGLA H+GVLA+L TIGVGKNLHHVDGL  S 
Sbjct:   117 LQKMRDEKHPFYPQVLMVDGNGILHPRGFGLACHLGVLAHLPTIGVGKNLHHVDGLNQSE 176

Query:   217 VRQLLDAKENNNEDIIPLMGGSGSTWGVAMRSTPDTLKPIFISVGHCISLDTAVMIVKMT 276
             V+Q L  + N +E  I L+G SG TWGV  R T  +LKPI++SVGH ISLD+AV +VK+T
Sbjct:   177 VKQSLQLQINEHEQTITLVGNSGITWGVGFRPTLSSLKPIYVSVGHRISLDSAVEVVKIT 236

Query:   277 CKYRVPEPIRQADIRSRDYLQKHQS 301
             CKYRVPEPIRQADIRSR YLQKHQ+
Sbjct:   237 CKYRVPEPIRQADIRSRAYLQKHQT 261

GO:0004519 "endonuclease activity" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0006281 "DNA repair" evidence=IEA

DICTYBASE|DDB_G0273907 DDB_G0273907 "endonuclease V" [Dictyostelium discoideum (taxid:44689)]

 Score = 413 (150.4 bits), Expect = 8.8e-59, Sum P(2) = 8.8e-59
 Identities = 80/176 (45%), Positives = 118/176 (67%)

Query:    51 QLNQWTEIQDELKKRLITEDFFTWNLPXXXXXXXXXXXXXXVLLKYIGGVDMSFSKEDPS 110
             Q ++W EIQ+ELKK LI +D F + +                 LKYIGGVD+SF K++  
Sbjct:    27 QQDKWIEIQNELKKSLIEKDDFNFKIDDENKMNTT--------LKYIGGVDISFVKDNDI 78

Query:   111 IACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRA--NHFY 168
              AC  ++V++  +L+IVY+D   ++L   Y+PGFLAFRE P L+ L++ +K+    NH  
Sbjct:    79 DACASLIVIEYPSLKIVYKDIEFVKLSELYIPGFLAFRETPHLIKLINKLKQSITYNHLL 138

Query:   169 PQVLMVDGNGLLHPRGFGLASHIGVLANLTTIGVGKNLHHVDGLTHSGVRQLLDAK 224
             PQ++M+DGNG+LHPRGFGLASH+GVL ++ TIGVGK   HVDGL+   ++  ++++
Sbjct:   139 PQIIMIDGNGILHPRGFGLASHLGVLIDIPTIGVGKTFFHVDGLSTKEIKSKVESE 194

GO:0006281 "DNA repair" evidence=IEA

GO:0004519 "endonuclease activity" evidence=IEA

DICTYBASE|DDB_G0273165 DDB_G0273165 "endonuclease V" [Dictyostelium discoideum (taxid:44689)]

 Score = 413 (150.4 bits), Expect = 8.8e-59, Sum P(2) = 8.8e-59
 Identities = 80/176 (45%), Positives = 118/176 (67%)

Query:    51 QLNQWTEIQDELKKRLITEDFFTWNLPXXXXXXXXXXXXXXVLLKYIGGVDMSFSKEDPS 110
             Q ++W EIQ+ELKK LI +D F + +                 LKYIGGVD+SF K++  
Sbjct:    27 QQDKWIEIQNELKKSLIEKDDFNFKIDDENKMNTT--------LKYIGGVDISFVKDNDI 78

Query:   111 IACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRA--NHFY 168
              AC  ++V++  +L+IVY+D   ++L   Y+PGFLAFRE P L+ L++ +K+    NH  
Sbjct:    79 DACASLIVIEYPSLKIVYKDIEFVKLSELYIPGFLAFRETPHLIKLINKLKQSITYNHLL 138

Query:   169 PQVLMVDGNGLLHPRGFGLASHIGVLANLTTIGVGKNLHHVDGLTHSGVRQLLDAK 224
             PQ++M+DGNG+LHPRGFGLASH+GVL ++ TIGVGK   HVDGL+   ++  ++++
Sbjct:   139 PQIIMIDGNGILHPRGFGLASHLGVLIDIPTIGVGKTFFHVDGLSTKEIKSKVESE 194

GO:0006281 "DNA repair" evidence=IEA

GO:0004519 "endonuclease activity" evidence=IEA

UNIPROTKB|E1C197 ENDOV "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 532 (192.3 bits), Expect = 3.1e-51, P = 3.1e-51
 Identities = 111/255 (43%), Positives = 151/255 (59%)

Query:    44 PDPAAQAQLNQWTEIQDELKKRLITEDFFTWNLPXXXXXXXXXXXXXXVLLKYIGGVDMS 103
             P     A L +W   QD L+  ++ ED   W                   L+ +GGVD+S
Sbjct:     6 PKAVPAATLRRWECEQDRLRAAVVPEDTERWQREPGWAG-----------LQRVGGVDLS 54

Query:   104 FSKEDPSIACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKR 163
             + K     AC  +VVL    L+++YED  ++ +  PYV GFLAFRE P ++  ++ +++ 
Sbjct:    55 YVKGGDGSACASLVVLGYPGLEVLYEDCRMVAVSAPYVAGFLAFREVPFMVEAVERLQRE 114

Query:   164 ANHFYPQVLMVDGNGLLHPRGFGLASHIGVLANLTTIGVGKNLHHVDGLTHSGVRQLLDA 223
                  PQVL+VDGNGLLH RGFG+A H+GVL +L  +GV KNL HVDGL    + +    
Sbjct:   115 QPGLRPQVLLVDGNGLLHQRGFGVACHLGVLTDLPCVGVAKNLLHVDGLVKDELHKEQIR 174

Query:   224 KENNNEDIIPLMGGSGSTWGVAMRSTPDTLKPIFISVGHCISLDTAVMIVKMTCKYRVPE 283
                   D  PL G SG+  G+A+R   ++ KP++ISVGH I L+TAV +VK  CKYR+PE
Sbjct:   175 SLQKKGDTFPLTGTSGAVLGMALRGCNNSSKPLYISVGHRICLETAVRLVKSCCKYRIPE 234

Query:   284 PIRQADIRSRDYLQK 298
             PIRQADIRSR Y+QK
Sbjct:   235 PIRQADIRSRAYIQK 249

GO:0000287 "magnesium ion binding" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

GO:0016888 "endodeoxyribonuclease activity, producing 5'-phosphomonoesters" evidence=IEA

UNIPROTKB|E2R813 ENDOV "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 531 (192.0 bits), Expect = 4.0e-51, P = 4.0e-51
 Identities = 111/261 (42%), Positives = 159/261 (60%)

Query:    38 REALASPDPAAQAQLNQWTEIQDELKKRLITEDFFTWNLPXXXXXXXXXXXXXXVLLKYI 97
             REA   P P  +  L+ W   Q +LK  L+ +D   W                   L+ +
Sbjct:     3 REAAEKP-P--EEILSLWKREQAQLKALLVEQDTEAWQRDPAFSG-----------LQRV 48

Query:    98 GGVDMSFSKEDPSIACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLL 157
             GGVD+SF K D + AC  +VVL    L++VYED S++ L  PY+ GFLAFRE P L+  +
Sbjct:    49 GGVDLSFVKGDSASACASLVVLSYPELEVVYEDCSMVNLTAPYMSGFLAFREVPFLVDAV 108

Query:   158 DNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLANLTTIGVGKNLHHVDGLTHSGV 217
               ++++  H  PQVL VDGNG+LH RGFG+A H+G+L +L  IGV K L  VDGL ++  
Sbjct:   109 QRLQEKEPHMVPQVLFVDGNGVLHHRGFGVACHLGILTDLPCIGVAKKLLQVDGLENNAQ 168

Query:   218 RQLLDAKENNNEDIIPLMGGSGSTWGVAMRSTPDTLKPIFISVGHCISLDTAVMIVKMTC 277
              +          D  PL+GGSG+  G+A++S   + KP+++SVGH ISL++AV + +  C
Sbjct:   169 HKEKIRLLQAEGDTFPLIGGSGTVLGMALKSHSHSSKPLYVSVGHRISLESAVRLTRSCC 228

Query:   278 KYRVPEPIRQADIRSRDYLQK 298
             ++R PEP+RQADIRSRDY+++
Sbjct:   229 RFRSPEPVRQADIRSRDYIRR 249

GO:0016888 "endodeoxyribonuclease activity, producing 5'-phosphomonoesters" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

GO:0000287 "magnesium ion binding" evidence=IEA

UNIPROTKB|F1RZ91 LOC100525423 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 514 (186.0 bits), Expect = 2.5e-49, P = 2.5e-49
 Identities = 97/205 (47%), Positives = 139/205 (67%)

Query:    94 LKYIGGVDMSFSKEDPSIACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVL 153
             L+ +GGVD+SF K+D   AC  +VVL+   L++VYED  ++ L  PYV G+LAFRE P L
Sbjct:    45 LQRVGGVDVSFVKDDSVSACASLVVLNYPELEVVYEDCRMVSLTAPYVSGYLAFREVPFL 104

Query:   154 LSLLDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLANLTTIGVGKNLHHVDGLT 213
             +  +  ++++     PQVL VDGNG+LH RGFG+A H+GVL ++  IGV K L  VDGL 
Sbjct:   105 VDAVQRLQEKDPQLMPQVLFVDGNGVLHHRGFGVACHLGVLTDVPCIGVAKKLLQVDGLE 164

Query:   214 HSGVRQLLDAKENNNEDIIPLMGGSGSTWGVAMRSTPDTLKPIFISVGHCISLDTAVMIV 273
             +    +          D  PLMGGSG+  G+A++S   + KP+++SVGH +SL+TAV + 
Sbjct:   165 NDAAHREKIRLLKAGGDSFPLMGGSGAVLGMALKSHDHSTKPLYVSVGHKMSLETAVRLT 224

Query:   274 KMTCKYRVPEPIRQADIRSRDYLQK 298
                C++R+PEP+RQADIRSRDY+++
Sbjct:   225 HSCCRFRIPEPVRQADIRSRDYIRR 249

GO:0006281 "DNA repair" evidence=IEA

GO:0004519 "endonuclease activity" evidence=IEA

UNIPROTKB|F1RZA7 F1RZA7 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 514 (186.0 bits), Expect = 2.5e-49, P = 2.5e-49
 Identities = 97/205 (47%), Positives = 139/205 (67%)

Query:    94 LKYIGGVDMSFSKEDPSIACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVL 153
             L+ +GGVD+SF K+D   AC  +VVL+   L++VYED  ++ L  PYV G+LAFRE P L
Sbjct:    45 LQRVGGVDVSFVKDDSVSACASLVVLNYPELEVVYEDCRMVSLTAPYVSGYLAFREVPFL 104

Query:   154 LSLLDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLANLTTIGVGKNLHHVDGLT 213
             +  +  ++++     PQVL VDGNG+LH RGFG+A H+GVL ++  IGV K L  VDGL 
Sbjct:   105 VDAVQRLQEKDPQLMPQVLFVDGNGVLHHRGFGVACHLGVLTDVPCIGVAKKLLQVDGLE 164

Query:   214 HSGVRQLLDAKENNNEDIIPLMGGSGSTWGVAMRSTPDTLKPIFISVGHCISLDTAVMIV 273
             +    +          D  PLMGGSG+  G+A++S   + KP+++SVGH +SL+TAV + 
Sbjct:   165 NDAAHREKIRLLKAGGDSFPLMGGSGAVLGMALKSHDHSTKPLYVSVGHKMSLETAVRLT 224

Query:   274 KMTCKYRVPEPIRQADIRSRDYLQK 298
                C++R+PEP+RQADIRSRDY+++
Sbjct:   225 HSCCRFRIPEPVRQADIRSRDYIRR 249

GO:0006281 "DNA repair" evidence=IEA

GO:0004519 "endonuclease activity" evidence=IEA

MGI|MGI:2444688 Endov "endonuclease V" [Mus musculus (taxid:10090)]

 Score = 512 (185.3 bits), Expect = 4.1e-49, P = 4.1e-49
 Identities = 106/247 (42%), Positives = 150/247 (60%)

Query:    52 LNQWTEIQDELKKRLITEDFFTWNLPXXXXXXXXXXXXXXVLLKYIGGVDMSFSKEDPSI 111
             L+ W   Q  LK R++  D   W                   L+ +GGVD+SF K D   
Sbjct:    14 LSLWKGEQARLKARVVDRDTEAWQRDPSFSG-----------LQKVGGVDVSFVKGDSVR 62

Query:   112 ACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQV 171
             AC  +VVL    L++VYED  ++ L+ PYV GFLAFRE P L+ L+  ++++     PQV
Sbjct:    63 ACASLVVLSYPELKVVYEDSRMVGLKAPYVSGFLAFREVPFLVELVQRLQEKEPDLMPQV 122

Query:   172 LMVDGNGLLHPRGFGLASHIGVLANLTTIGVGKNLHHVDGLTHSGVRQLLDAKENNNEDI 231
             ++VDGNG+LH RGFG+A H+GVL  L  IGV K L  VDGL ++ + +          D 
Sbjct:   123 VLVDGNGVLHQRGFGVACHLGVLTELPCIGVAKKLLQVDGLENNALHKEKIVLLQAGGDT 182

Query:   232 IPLMGGSGSTWGVAMRSTPDTLKPIFISVGHCISLDTAVMIVKMTCKYRVPEPIRQADIR 291
              PL+G SG+  G+A+RS   + KP+++SVGH ISL+ AV +    C++R+PEPIRQADIR
Sbjct:   183 FPLIGSSGTVLGMALRSHDHSTKPLYVSVGHRISLEVAVRLTHHCCRFRIPEPIRQADIR 242

Query:   292 SRDYLQK 298
             SR+Y+++
Sbjct:   243 SREYIRR 249

GO:0000287 "magnesium ion binding" evidence=IDA

GO:0004518 "nuclease activity" evidence=IEA

GO:0004519 "endonuclease activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0006281 "DNA repair" evidence=IDA

GO:0006974 "response to DNA damage stimulus" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0016888 "endodeoxyribonuclease activity, producing 5'-phosphomonoesters" evidence=IDA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|Q8N8Q3 ENDOV "Endonuclease V" [Homo sapiens (taxid:9606)]

 Score = 495 (179.3 bits), Expect = 2.6e-47, P = 2.6e-47
 Identities = 104/259 (40%), Positives = 152/259 (58%)

Query:    40 ALASPDPAAQAQLNQWTEIQDELKKRLITEDFFTWNLPXXXXXXXXXXXXXXVLLKYIGG 99
             AL +     +  L+ W   Q  LK  ++  D   W                   L+ +GG
Sbjct:     2 ALEAAGGPPEETLSLWKREQARLKAHVVDRDTEAWQRDPAFSG-----------LQRVGG 50

Query:   100 VDMSFSKEDPSIACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDN 159
             VD+SF K D   AC  +VVL    L++VYE+  ++ L  PYV GFLAFRE P LL L+  
Sbjct:    51 VDVSFVKGDSVRACASLVVLSFPELEVVYEESRMVSLTAPYVSGFLAFREVPFLLELVQQ 110

Query:   160 MKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLANLTTIGVGKNLHHVDGLTHSGVRQ 219
             ++++     PQVL+VDGNG+LH RGFG+A H+GVL +L  +GV K L  VDGL ++ + +
Sbjct:   111 LREKEPGLMPQVLLVDGNGVLHHRGFGVACHLGVLTDLPCVGVAKKLLQVDGLENNALHK 170

Query:   220 LLDAKENNNEDIIPLMGGSGSTWGVAMRSTPDTLKPIFISVGHCISLDTAVMIVKMTCKY 279
                       D  PL+G SG+  G+A+RS   + +P++ISVGH +SL+ AV +    C++
Sbjct:   171 EKIRLLQTRGDSFPLLGDSGTVLGMALRSHDRSTRPLYISVGHRMSLEAAVRLTCCCCRF 230

Query:   280 RVPEPIRQADIRSRDYLQK 298
             R+PEP+RQADI SR++++K
Sbjct:   231 RIPEPVRQADICSREHIRK 249

GO:0006281 "DNA repair" evidence=ISS

GO:0016888 "endodeoxyribonuclease activity, producing 5'-phosphomonoesters" evidence=ISS

GO:0000287 "magnesium ion binding" evidence=ISS

UNIPROTKB|Q1JQE5 LOC526597 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 433 (157.5 bits), Expect = 9.6e-41, P = 9.6e-41
 Identities = 88/172 (51%), Positives = 116/172 (67%)

Query:   133 LLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIG 192
             ++ L  PYV GFLAFRE P L+  +  +++R     PQVL VDGNG+LH RGFG+A H+G
Sbjct:     1 MVTLTAPYVSGFLAFRELPFLVDAVQQLRQREPRLMPQVLFVDGNGVLHHRGFGVACHLG 60

Query:   193 VLANLTTIGVGKNLHHVDGLTHSGVR----QLLDAKENNNEDIIPLMGGSGSTWGVAMRS 248
             VL +L  IGV K L  VDGL ++ +     QLL A      D  PLMGGSG+  G A+RS
Sbjct:    61 VLTDLPCIGVAKKLLQVDGLENNALHKEKIQLLKA----GGDSFPLMGGSGTVLGRALRS 116

Query:   249 TPDTLKPIFISVGHCISLDTAVMIVKMTCKYRVPEPIRQADIRSRDYLQKHQ 300
                + KP+++SVGH ISL+ AV +    CK+R+PEP+RQADIRSRDY+++ Q
Sbjct:   117 HDHSTKPLYVSVGHKISLEAAVRLTHSCCKFRIPEPVRQADIRSRDYIRRTQ 168

GO:0016888 "endodeoxyribonuclease activity, producing 5'-phosphomonoesters" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

GO:0000287 "magnesium ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8N8Q3	ENDOV_HUMAN	3, ., 1, ., 2, 1, ., -	0.4015	0.8025	0.8794	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.1.21	LOW CONFIDENCE prediction!
3rd Layer	3.1.21.7	0.737

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00032391001	SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (262 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00001931001	SubName- Full=Chromosome chr5 scaffold_124, whole genome shotgun sequence; (291 aa)							•		0.726
	GSVIVG00021219001	RecName- Full=Uracil-DNA glycosylase; EC=3.2.2.-;; Excises uracil residues from the DNA which c [...] (328 aa)							•		0.673
	GSVIVG00001677001	SubName- Full=Chromosome chr13 scaffold_120, whole genome shotgun sequence; (946 aa)							•		0.648
	GSVIVG00022496001	SubName- Full=Chromosome chr14 scaffold_27, whole genome shotgun sequence; (330 aa)	•						•		0.568
	GSVIVG00013338001	SubName- Full=Chromosome undetermined scaffold_463, whole genome shotgun sequence; (476 aa)							•		0.550
	GSVIVG00015131001	SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (189 aa)	•								0.511
	GSVIVG00002540001	RecName- Full=2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; EC=4.6.1.12; (183 aa)	•								0.498
	GSVIVG00019865001	SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (961 aa)	•								0.484
	GSVIVG00019077001	SubName- Full=Chromosome chr15 scaffold_19, whole genome shotgun sequence; (267 aa)	•								0.472
	GSVIVG00019071001	SubName- Full=Chromosome chr15 scaffold_19, whole genome shotgun sequence; (636 aa)	•								0.420

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	309
cd06559	208	cd06559, Endonuclease_V, Endonuclease_V, a DNA rep	1e-85
pfam04493	205	pfam04493, Endonuclease_5, Endonuclease V	2e-66
COG1515	212	COG1515, Nfi, Deoxyinosine 3'endonuclease (endonuc	5e-53
PRK11617	224	PRK11617, PRK11617, endonuclease V; Provisional	6e-51

>gnl|CDD|143472 cd06559, Endonuclease_V, Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases

 Score =  255 bits (654), Expect = 1e-85
 Identities = 87/244 (35%), Positives = 128/244 (52%), Gaps = 37/244 (15%)

Query: 52  LNQWTEIQDELKKRLITEDFFTWNLPNSTTTNTSTKEEEEVLLKYIGGVDMSFSKEDPSI 111
           L +  ++Q+EL K+++ ED     +                  + + GVD+S+ K+   +
Sbjct: 1   LEEARKLQEELAKKVVLEDLGPGEV------------------RLVAGVDVSYKKDG-DL 41

Query: 112 ACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQV 171
           A    VVLD   L++V    ++  +  PY+PG LAFRE P LL  L+ +K +     P +
Sbjct: 42  AVAAAVVLDYPDLEVVETAVAVGEVTFPYIPGLLAFREGPPLLEALEKLKTK-----PDL 96

Query: 172 LMVDGNGLLHPRGFGLASHIGVLANLTTIGVGKNLHHVDGLTHSGVRQLLDAKENNNEDI 231
           L+VDG+G+ HPR FGLASH+GVL +L TIGV K+L   DG                    
Sbjct: 97  LLVDGHGIAHPRRFGLASHLGVLLDLPTIGVAKSLLVGDGEE-----------PGEERGS 145

Query: 232 IPLMGGSGSTWGVAMRSTPDTLKPIFISVGHCISLDTAVMIVKMTCK-YRVPEPIRQADI 290
              +   G   G A+R+     KP+++S GH I L+TAV +V   CK YR+PEP R AD+
Sbjct: 146 FTPLYDDGEVVGAALRTRDGV-KPVYVSPGHRIDLETAVELVLKCCKGYRLPEPTRLADL 204

Query: 291 RSRD 294
            SR+
Sbjct: 205 LSRE 208

Endonuclease_V (EndoV) is an enzyme that can initiate repair of all possible deaminated DNA bases. EndoV cleaves the DNA strand containing lesions at the second phosphodiester bond 3' to the lesion using Mg2+ as a cofactor. EndoV homologs are conserved throughout all domains of life from bacteria to humans. EndoV is encoded by the nfi gene and nfi null mutant mice have a phenotype prone to cancer. The ability of endonuclease V to recognize mismatches and abnormal replicative DNA structures suggests that the enzyme plays an important role in DNA metabolism. The details of downstream processing for the EndoV pathway remain unknown. Length = 208

>gnl|CDD|218111 pfam04493, Endonuclease_5, Endonuclease V

 Score =  206 bits (527), Expect = 2e-66
 Identities = 88/237 (37%), Positives = 122/237 (51%), Gaps = 34/237 (14%)

Query: 58  IQDELKKRLITEDFFTWNLPNSTTTNTSTKEEEEVLLKYIGGVDMSFSKEDPSIACGCIV 117
            Q+EL+K++                     E E+  L+Y+ GVD+S+ KE    A   +V
Sbjct: 1   KQEELQKKISLSP----------------DESEDSELRYVAGVDVSYDKET--RAVAALV 42

Query: 118 VLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVLMVDGN 177
           VLD  +L+++ +      +  PY+PGFLAFRE P+LL  L  +        P VL+VDGN
Sbjct: 43  VLDFPSLEVIEKKVIRGEISFPYIPGFLAFRELPLLLKALKKLYDE-----PDVLLVDGN 97

Query: 178 GLLHPRGFGLASHIGVLANLTTIGVGKNLHHVDGLTHSGVRQLLDAKENNNEDIIPLMGG 237
           G+ HPR FGLA+H GVL +  TIGV K L    G           A           +  
Sbjct: 98  GIAHPRRFGLATHAGVLLDKPTIGVAKKLLKGTGKDFVEPESERGA--------GTPILI 149

Query: 238 SGSTWGVAMRSTPDTLKPIFISVGHCISLDTAVMIVKMTCKY--RVPEPIRQADIRS 292
           +G   G A+R+  D  KPIF+S G+ ISLD+A+ + K   K   R+PEP RQADI +
Sbjct: 150 NGEVSGGALRTKED-AKPIFVSPGNKISLDSALKLAKKLSKGYIRLPEPTRQADILT 205

Endonuclease V is specific for single-stranded DNA or for duplex DNA that contains uracil or that is damaged by a variety of agents. Length = 205

>gnl|CDD|224432 COG1515, Nfi, Deoxyinosine 3'endonuclease (endonuclease V) [DNA replication, recombination, and repair]

 Score =  172 bits (438), Expect = 5e-53
 Identities = 82/242 (33%), Positives = 119/242 (49%), Gaps = 46/242 (19%)

Query: 57  EIQDELKKRLITEDFFTWNLPNSTTTNTSTKEEEEVLLKYIGGVDMSFSKEDPSIACGCI 116
           EIQ+EL + ++ E  F                     ++ + GVD+S+  ED        
Sbjct: 11  EIQEELARSVVLEPDFE--------------------VRTVAGVDVSY--EDGERGRAAA 48

Query: 117 VVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVLMVDG 176
           VVLD   L+++        +  PY+PGFLAFRE P+LL  L+ +  +     P +L+VDG
Sbjct: 49  VVLDYPDLEVIETAVVRGPVSFPYIPGFLAFRELPLLLKALEKLSVK-----PDLLLVDG 103

Query: 177 NGLLHPRGFGLASHIGVLANLTTIGVGKNLHHVDGLTHS---GVRQLLDAKENNNEDIIP 233
           +G+ HPR  GLASHIGVL ++ TIGV K+      +      G  + L  K         
Sbjct: 104 HGIAHPRRLGLASHIGVLLDVPTIGVAKSRLCGTPVEPESRRGAGKPLYDK--------- 154

Query: 234 LMGGSGSTWGVAMRSTPDTLKPIFISVGHCISLDTAVMIVKMTCK-YRVPEPIRQADIRS 292
                G   G  +R+     KPIF+S GH ISL +A+ + +   K YR+PEP R ADI +
Sbjct: 155 -----GEVLGGVLRTKERA-KPIFVSPGHRISLPSALKLAQRLSKGYRLPEPTRLADILA 208

Query: 293 RD 294
           + 
Sbjct: 209 KK 210

Length = 212

>gnl|CDD|236937 PRK11617, PRK11617, endonuclease V; Provisional

 Score =  167 bits (425), Expect = 6e-51
 Identities = 79/235 (33%), Positives = 117/235 (49%), Gaps = 40/235 (17%)

Query: 58  IQDELKKRLITEDFFTWNLPNSTTTNTSTKEEEEVLLKYIGGVDMSFSKEDPSIACGCIV 117
            Q EL   +I ED    + P                 + I G D+ F ++   +    IV
Sbjct: 10  QQIELASSVIREDRLDKDPP-----------------RLIAGADVGF-EQGGEVTRAAIV 51

Query: 118 VLDLQTLQIVYEDYSLLRLQV--PYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVLMVD 175
           VL   +L++V  +Y + R+    PY+PGFL+FRE P LL+  + + ++     P ++ VD
Sbjct: 52  VLKYPSLELV--EYQVARIATTMPYIPGFLSFREYPALLAAWEQLSQK-----PDLVFVD 104

Query: 176 GNGLLHPRGFGLASHIGVLANLTTIGVGKNLHHVDGLTHSGVRQLLDAKENNNEDIIPLM 235
           G+G+ HPR  G+ASH G+L ++ TIGV K       L   G  + L  +  + +   PLM
Sbjct: 105 GHGIAHPRRLGVASHFGLLVDVPTIGVAKKR-----LC--GKFEPLSEEPGSLQ---PLM 154

Query: 236 GGSGSTWGVAMRSTPDTLKPIFISVGHCISLDTAVMIV-KMTCKYRVPEPIRQAD 289
              G   G   RS      P+FIS GH +SLD+A+  V +    YR+PEP R AD
Sbjct: 155 DK-GEQLGWVWRSKAR-CNPLFISTGHRVSLDSALAWVQRCMKGYRLPEPTRWAD 207

Length = 224

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	309
PRK11617	224	endonuclease V; Provisional	100.0
cd06559	208	Endonuclease_V Endonuclease_V, a DNA repair enzyme	100.0
PF04493	206	Endonuclease_5: Endonuclease V; InterPro: IPR00758	100.0
KOG4417	261	consensus Predicted endonuclease [General function	100.0
COG1515	212	Nfi Deoxyinosine 3'endonuclease (endonuclease V) [	100.0
PRK00766	194	hypothetical protein; Provisional	99.84
PF01949	187	DUF99: Protein of unknown function DUF99; InterPro	99.75
COG1628	185	Endonuclease V homolog [Replication, recombination	99.58
PF08459	155	UvrC_HhH_N: UvrC Helix-hairpin-helix N-terminal; I	97.11
PRK14672	691	uvrC excinuclease ABC subunit C; Provisional	96.44
PRK12306	519	uvrC excinuclease ABC subunit C; Reviewed	96.35
TIGR00194	574	uvrC excinuclease ABC, C subunit. This family cons	96.29
PRK14667	567	uvrC excinuclease ABC subunit C; Provisional	96.26
PRK14670	574	uvrC excinuclease ABC subunit C; Provisional	96.23
PRK14671	621	uvrC excinuclease ABC subunit C; Provisional	96.15
PRK14668	577	uvrC excinuclease ABC subunit C; Provisional	96.1
PRK14669	624	uvrC excinuclease ABC subunit C; Provisional	96.02
PRK00558	598	uvrC excinuclease ABC subunit C; Validated	95.96
COG0322	581	UvrC Nuclease subunit of the excinuclease complex	95.13
PF09376	247	NurA: NurA domain; InterPro: IPR018977 This domain	94.69
PRK14666	694	uvrC excinuclease ABC subunit C; Provisional	93.08
PF02171	302	Piwi: Piwi domain; InterPro: IPR003165 This domain	87.83

>PRK11617 endonuclease V; Provisional

Probab=100.00  E-value=8.5e-71  Score=504.12  Aligned_cols=213  Identities=35%  Similarity=0.590  Sum_probs=193.4

Q ss_pred             HHHHHHHHHHHHhhccccccccCCCCCCCCCCCCCchhhcccccEEEEEeeeeecCCCCeEEEEEEEEeCCCceEEEEEE
Q 046070           52 LNQWTEIQDELKKRLITEDFFTWNLPNSTTTNTSTKEEEEVLLKYIGGVDMSFSKEDPSIACGCIVVLDLQTLQIVYEDY  131 (309)
Q Consensus        52 ~~~~~~~Q~~L~~~vi~~d~~~~~~~~~~~~~~~~~~~~~~~~~~VaGvDvSf~~~~~~~a~Aa~VVl~~~~l~vv~~~~  131 (309)
                      .++|+++|++|+++++++|.++                 ..++++|||+|+||.++ +..++|++||++|++++++++.+
T Consensus         4 ~~~~~~~Q~~l~~~v~~~~~~~-----------------~~~~~~VaGvDvsy~~~-~~~~~aa~Vvl~~~~~~~v~~~~   65 (224)
T PRK11617          4 LAELRAQQIELASSVIREDRLD-----------------KDPPRLIAGADVGFEQG-GEVTRAAIVVLKYPSLELVEYQV   65 (224)
T ss_pred             HHHHHHHHHHHHhhccccccCC-----------------CCCccEEEEEEEEEcCC-CceEEEEEEEEECCCCcEEEEEE
Confidence            4789999999999999887531                 13689999999999764 45688999999999999999999


Q ss_pred             EEEeeccCCCCccccccchHHHHHHHHHHHhhcCCCCCcEEEEecccccCCCCCCchhhHhhhcCCeeEEEeCCccccCC
Q 046070          132 SLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLANLTTIGVGKNLHHVDG  211 (309)
Q Consensus       132 ~~~~~~~PYIPG~LAFRE~P~il~al~kL~~~~p~~~PdvilVDG~Gi~HPR~~GlAsHlGv~l~iPtIGVAKs~L~~dG  211 (309)
                      ...+++||||||||||||+|+|++++++|+.+     ||+|||||||++|||+||||||+|+.+|+||||||||+|+++ 
T Consensus        66 ~~~~~~~PYIPG~LaFRE~P~~l~al~~l~~~-----PdlllvDG~G~~HPR~~GlA~HlGv~~~~PtIGVAK~~L~g~-  139 (224)
T PRK11617         66 ARIATTMPYIPGFLSFREYPALLAAWEQLSQK-----PDLVFVDGHGIAHPRRLGVASHFGLLVDVPTIGVAKKRLCGK-  139 (224)
T ss_pred             EEeccCCCcCcchHHHhhHHHHHHHHHhcCcC-----CCEEEEcCceeECCCCcceeeEEEeecCCCEEEEEcccccCC-
Confidence            99999999999999999999999999999864     999999999999999999999999999999999999999943 


Q ss_pred             ccccccccccccccCCCCCeeeccCCCCcEEEEEEeecCCCCccEEEecCCCCCHHHHHHHHHHcC-CCCCChHHHHHHH
Q 046070          212 LTHSGVRQLLDAKENNNEDIIPLMGGSGSTWGVAMRSTPDTLKPIFISVGHCISLDTAVMIVKMTC-KYRVPEPIRQADI  290 (309)
Q Consensus       212 ~~~~~~~~~~~~~~~~~g~~~~l~~~~ge~vG~alrt~~~~~kPIyVS~Gh~isLetA~~iv~~~~-~~RlPEPlR~Ad~  290 (309)
                               +.++++++|++.+|+ .+|+++|+++||+. ++||||||+||+|||++|+++|++|+ +||+|||||+||+
T Consensus       140 ---------~~~~~~~~G~~~~l~-~~g~vvG~~lrt~~-~~kPiyVS~Gh~i~l~~A~~~v~~~~~~yRlPePlR~Ad~  208 (224)
T PRK11617        140 ---------FEPLSEEPGSLQPLM-DKGEQLGWVWRSKA-RCNPLFISTGHRVSLDSALAWVQRCMKGYRLPEPTRWADA  208 (224)
T ss_pred             ---------CcCccccCCceeeEe-ECCEEEEEEEEcCC-CCCCEEEcCCCCcCHHHHHHHHHHHccCCCCCHHHHHHHH
Confidence                     234577889999998 46999999999975 68999999999999999999999998 8999999999999


Q ss_pred             HHHHHHHhh
Q 046070          291 RSRDYLQKH  299 (309)
Q Consensus       291 ~sr~~~r~~  299 (309)
                      +|++..+..
T Consensus       209 ls~~~~~~~  217 (224)
T PRK11617        209 LASRRPAFV  217 (224)
T ss_pred             HHhhhhhhh
Confidence            999887755

>cd06559 Endonuclease_V Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases

Probab=100.00  E-value=7.2e-68  Score=480.65  Aligned_cols=206  Identities=43%  Similarity=0.743  Sum_probs=186.0

Q ss_pred             HHHHHHHHHHHhhccccccccCCCCCCCCCCCCCchhhcccccEEEEEeeeeecCCCCeEEEEEEEEeCCCceEEEEEEE
Q 046070           53 NQWTEIQDELKKRLITEDFFTWNLPNSTTTNTSTKEEEEVLLKYIGGVDMSFSKEDPSIACGCIVVLDLQTLQIVYEDYS  132 (309)
Q Consensus        53 ~~~~~~Q~~L~~~vi~~d~~~~~~~~~~~~~~~~~~~~~~~~~~VaGvDvSf~~~~~~~a~Aa~VVl~~~~l~vv~~~~~  132 (309)
                      ++|+++|++|+++++.++.+.                  .++++|+|+|+||.+ +++.++|++||++|+++++++..+.
T Consensus         2 ~~~~~~Q~~l~~~v~~~~~~~------------------~~~~~I~gvDiS~~~-~~~~~vaa~Vv~~~~~~~~~~~~~~   62 (208)
T cd06559           2 EEARKLQEELAKKVVLEDLGP------------------GEVRLVAGVDVSYKK-DGDLAVAAAVVLDYPDLEVVETAVA   62 (208)
T ss_pred             HHHHHHHHHHHhhcccCCCCC------------------CCccEEEEEEeeecc-CCCeEEEEEEEEECCCCcEEEEEEE
Confidence            689999999999999987521                  468999999999987 3457999999999999999999999


Q ss_pred             EEeeccCCCCccccccchHHHHHHHHHHHhhcCCCCCcEEEEecccccCCCCCCchhhHhhhcCCeeEEEeCCccccCCc
Q 046070          133 LLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLANLTTIGVGKNLHHVDGL  212 (309)
Q Consensus       133 ~~~~~~PYIPG~LAFRE~P~il~al~kL~~~~p~~~PdvilVDG~Gi~HPR~~GlAsHlGv~l~iPtIGVAKs~L~~dG~  212 (309)
                      ..++++|||||||||||+|++++++++|+.     .||+|||||||++|||+||||||+|+.+|+||||||||+|++++.
T Consensus        63 ~~~~~~PYIPG~LafRE~p~l~~~~~~l~~-----~PDlilVDG~G~~HpR~~GlA~HlGv~l~~PtIGVAK~~l~g~~~  137 (208)
T cd06559          63 VGEVTFPYIPGLLAFREGPPLLEALEKLKT-----KPDLLLVDGHGIAHPRRFGLASHLGVLLDLPTIGVAKSLLVGDGE  137 (208)
T ss_pred             EEecCCCCcchhHHHhhHHHHHHHHHhCCC-----CCCEEEEeCCccccCCCcchhheeeeecCCCEEEEEccccccCCc
Confidence            999999999999999999999999999985     399999999999999999999999999999999999999996553


Q ss_pred             cccccccccccccCCCCCeeeccCCCCcEEEEEEeecCCCCccEEEecCCCCCHHHHHHHHHHcC-CCCCChHHHHHHHH
Q 046070          213 THSGVRQLLDAKENNNEDIIPLMGGSGSTWGVAMRSTPDTLKPIFISVGHCISLDTAVMIVKMTC-KYRVPEPIRQADIR  291 (309)
Q Consensus       213 ~~~~~~~~~~~~~~~~g~~~~l~~~~ge~vG~alrt~~~~~kPIyVS~Gh~isLetA~~iv~~~~-~~RlPEPlR~Ad~~  291 (309)
                                ++...+|++.++. .+|+++|+++||++ ++|||||||||+||+++|+++|++|+ +||+|||||+||++
T Consensus       138 ----------~~~~~~g~~~~~~-~~~~~vG~~~r~~~-~~~PiyVS~Gh~i~l~~A~~~v~~~~~~~r~Pep~R~Ad~~  205 (208)
T cd06559         138 ----------EPGEERGSFTPLY-DDGEVVGAALRTRD-GVKPVYVSPGHRIDLETAVELVLKCCKGYRLPEPTRLADLL  205 (208)
T ss_pred             ----------CcccccCceeeec-cCCEEEEEEEecCC-CCCCEEEcCCCCcCHHHHHHHHHHHccCCCCCcHHHHHHHH
Confidence                      2334457777765 67999999999875 58999999999999999999999999 59999999999999


Q ss_pred             HHH
Q 046070          292 SRD  294 (309)
Q Consensus       292 sr~  294 (309)
                      ||+
T Consensus       206 sr~  208 (208)
T cd06559         206 SRE  208 (208)
T ss_pred             hcC
Confidence            973

Endonuclease_V (EndoV) is an enzyme that can initiate repair of all possible deaminated DNA bases. EndoV cleaves the DNA strand containing lesions at the second phosphodiester bond 3' to the lesion using Mg2+ as a cofactor. EndoV homologs are conserved throughout all domains of life from bacteria to humans. EndoV is encoded by the nfi gene and nfi null mutant mice have a phenotype prone to cancer. The ability of endonuclease V to recognize mismatches and abnormal replicative DNA structures suggests that the enzyme plays an important role in DNA metabolism. The details of downstream processing for the EndoV pathway remain unknown.

>PF04493 Endonuclease_5: Endonuclease V; InterPro: IPR007581 Endonuclease V is specific for single-stranded DNA, for duplex DNA that contains uracil, or that is damaged []

Probab=100.00  E-value=2.6e-65  Score=463.35  Aligned_cols=204  Identities=44%  Similarity=0.755  Sum_probs=158.9

Q ss_pred             HHHHHHhhccccccccCCCCCCCCCCCCCchhhcccccEEEEEeeeeecCCCCeEEEEEEEEeCCCceEEEEEEEEEeec
Q 046070           58 IQDELKKRLITEDFFTWNLPNSTTTNTSTKEEEEVLLKYIGGVDMSFSKEDPSIACGCIVVLDLQTLQIVYEDYSLLRLQ  137 (309)
Q Consensus        58 ~Q~~L~~~vi~~d~~~~~~~~~~~~~~~~~~~~~~~~~~VaGvDvSf~~~~~~~a~Aa~VVl~~~~l~vv~~~~~~~~~~  137 (309)
                      .|++|+++++.++.++                ...++++|||+||||.+ +++.++||+|++++++++++++.+...+++
T Consensus         1 ~q~elq~~l~~~~~~~----------------~~~~~~~V~gvDvsy~~-~~~~~~a~~Vv~~~~~~~~v~~~~~~~~~~   63 (206)
T PF04493_consen    1 QQIELQEKLALKDRFS----------------PLSDVRLVAGVDVSYSD-RGDRAVAAAVVLDYPSLKVVEESYVIVPVS   63 (206)
T ss_dssp             -HHHHGGG---S---S----------------GCTC-SEEEEEEEEEEC-CCCEEEEEEEEEETTTTEEEEEEEEEEE--
T ss_pred             CHHHHHHHHhhccCcC----------------CCCccCEEEEEEEEEEc-CCCeEEEEEEEEECCCCCeEEEEEEEeccC
Confidence            4889999998887642                11368999999999973 356899999999999999999999999999


Q ss_pred             cCCCCccccccchHHHHHHHHHHHhhcCCCCCcEEEEecccccCCCCCCchhhHhhhcCCeeEEEeCCccccCCcccccc
Q 046070          138 VPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLANLTTIGVGKNLHHVDGLTHSGV  217 (309)
Q Consensus       138 ~PYIPG~LAFRE~P~il~al~kL~~~~p~~~PdvilVDG~Gi~HPR~~GlAsHlGv~l~iPtIGVAKs~L~~dG~~~~~~  217 (309)
                      ||||||||||||+|+|+++|++|+.+     ||+|||||||++|||+||||||+|+.+|+||||||||+|++++.     
T Consensus        64 ~PYiPG~LafRE~P~~l~~l~~l~~~-----~dvilvDG~G~~HpR~~GlA~HlGv~l~iPtIGVAK~~l~g~~~-----  133 (206)
T PF04493_consen   64 FPYIPGFLAFRELPCILEALEKLKNK-----PDVILVDGHGILHPRRFGLASHLGVLLDIPTIGVAKSLLYGDGE-----  133 (206)
T ss_dssp             S-SSTT-GGGGTHHHHHHHHHTSSS-------SCEEEES-SSSSTTS--HHHHHHHHHTS-EEEEESS-TTSTT------
T ss_pred             cCccCCceehhhHHHHHHHHHHhccc-----CCEEEEeCceeecCCCcChhheeeeccCCCEEEEeCcccccCCc-----
Confidence            99999999999999999999999875     89999999999999999999999999999999999999996543     


Q ss_pred             ccccccccCCCCCeeeccCCCCcEEEEEEeecCCCCccEEEecCCCCCHHHHHHHHHHcC-C-CCCChHHHHHHHHH
Q 046070          218 RQLLDAKENNNEDIIPLMGGSGSTWGVAMRSTPDTLKPIFISVGHCISLDTAVMIVKMTC-K-YRVPEPIRQADIRS  292 (309)
Q Consensus       218 ~~~~~~~~~~~g~~~~l~~~~ge~vG~alrt~~~~~kPIyVS~Gh~isLetA~~iv~~~~-~-~RlPEPlR~Ad~~s  292 (309)
                        .+..+..++|+..+|. .+|+++|+++||+ ++.+|+|||+||+||+++|++++++|+ + ||+|||||+||++|
T Consensus       134 --~~~~~~~~~g~~~~l~-~~~~~~g~~lrt~-~~~~pi~vS~Gh~i~l~ta~~iv~~~~~~~~r~PeP~r~Ad~~t  206 (206)
T PF04493_consen  134 --EFEEPGRKRGSSSPLY-ISGEVVGAALRTR-ESAKPIYVSPGHRISLETALEIVLKLCKGGYRLPEPTRLADLLT  206 (206)
T ss_dssp             --EE----SSTTEEEEEE-ETTEEEEEEEESS-TTS--EEEEEEESS-HHHHHHHHHHTSSTTSSS-HHHHHHHHHH
T ss_pred             --ccchhccccCccceEe-eCCEEEEEEEecC-CCCccEEEeCCCCcCHHHHHHHHHHHcCCCCcCCCcchhhhhcC
Confidence              2344555668888886 4699999999975 579999999999999999999999998 5 79999999999986

Matrix metalloproteinase-1 (MMP-1) is the major enzyme responsible for collagen 1 digestion. It is induced by exposure to sunlight, but is reduced with treatment of DNA repair enzyme endonuclease V []. This family consequently has potential medical importance []. This endonuclease also appears in bifunctional enzymes, such as the bifunctional methyltransferase/endonuclease in Thermoplasma acidophilum.; GO: 0004519 endonuclease activity, 0006281 DNA repair; PDB: 3GA2_A 2W36_A 3HD0_A 2W35_B 3GOC_B.

>KOG4417 consensus Predicted endonuclease [General function prediction only]

Probab=100.00  E-value=5.3e-65  Score=458.64  Aligned_cols=242  Identities=41%  Similarity=0.651  Sum_probs=212.5

Q ss_pred             hHHHHHHHHHHHHHHHHhhccccccccCCCCCCCCCCCCCchhhcccccEEEEEeeeeecCCCCeEEEEEEEEeCCCceE
Q 046070           47 AAQAQLNQWTEIQDELKKRLITEDFFTWNLPNSTTTNTSTKEEEEVLLKYIGGVDMSFSKEDPSIACGCIVVLDLQTLQI  126 (309)
Q Consensus        47 ~~~~~~~~~~~~Q~~L~~~vi~~d~~~~~~~~~~~~~~~~~~~~~~~~~~VaGvDvSf~~~~~~~a~Aa~VVl~~~~l~v  126 (309)
                      +...++..|+++|.+|+++++..++|.  +.         ...++.++++|||+|+||.+.+++.|++++|++++|++++
T Consensus         5 ~l~d~l~~W~~~q~elk~~Li~~~~fs--~q---------s~~~L~eikyV~GiD~Sf~K~~S~~a~~~lv~~~lp~l~~   73 (261)
T KOG4417|consen    5 NLHDKLTIWAKAQCELKERLIRDSTFS--VQ---------SVEDLDEIKYVAGIDTSFAKLNSDMAYISLVFWTLPDLKH   73 (261)
T ss_pred             hhHHHHHHHHHHHHHHHhhhhhccccc--cc---------cccchhheeeeeeeccchhhcCCCceEEEEEEEeccccee
Confidence            445789999999999999999988763  21         1112357999999999999988889999999999999999


Q ss_pred             EEEEEEEEeeccCCCCccccccchHHHHHHHHHHHhhcCCCCCcEEEEecccccCCCCCCchhhHhhhcCCeeEEEeCCc
Q 046070          127 VYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLANLTTIGVGKNL  206 (309)
Q Consensus       127 v~~~~~~~~~~~PYIPG~LAFRE~P~il~al~kL~~~~p~~~PdvilVDG~Gi~HPR~~GlAsHlGv~l~iPtIGVAKs~  206 (309)
                      |+..+....+..|||||||||||+|.|+..++++..+++++.||||||||||++|||+||+|||+||+.++||||||||+
T Consensus        74 v~~d~~~~~Le~pYvPgfLafREa~v~l~~L~~v~~erh~fr~dvilvDGnG~lHprGfGlACHlGvL~~lp~iGVaKNl  153 (261)
T KOG4417|consen   74 VATDSDTRMLELPYVPGFLAFREAEVMLDFLKSVITERHEFRPDVILVDGNGELHPRGFGLACHLGVLSGLPSIGVAKNL  153 (261)
T ss_pred             eeehhhhhhhccCcCccceeeehhHHHHHHHHhcccccCCccccEEEEcCCceEcccccchhhhhhHhcCCCccchhcch
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCcccc------ccccccccccCCCCCeeeccCCCCcEEEEEEeecCCCCccEEEecCCCCCHHHHHHHHHHc-CCC
Q 046070          207 HHVDGLTHS------GVRQLLDAKENNNEDIIPLMGGSGSTWGVAMRSTPDTLKPIFISVGHCISLDTAVMIVKMT-CKY  279 (309)
Q Consensus       207 L~~dG~~~~------~~~~~~~~~~~~~g~~~~l~~~~ge~vG~alrt~~~~~kPIyVS~Gh~isLetA~~iv~~~-~~~  279 (309)
                      ++++|+..+      .+++++.+.-++..-.+-+++.++..+|+.+++..++.||||||+||+|+||.|+++|.+. +++
T Consensus       154 hH~~gl~~s~~~~~es~k~h~~~~~~~h~~~i~~i~~s~v~~gv~i~~~~sS~~pvyVS~G~~i~Le~s~eiv~~~~~~~  233 (261)
T KOG4417|consen  154 HHTYGLIGSENKKVESFKEHCREVYKNHKTSIGFIPFSIVEPGVLILRMGSSMNPVYVSAGYGIDLELSTEIVSQLLLNN  233 (261)
T ss_pred             hhhhhcccchhhhHHHHHHHHHHHhccCCccceecCCcccceeeEEEeccCCCCcEEEEecccccHHHHHHHHHHHhhcC
Confidence            999998754      2444443333333334445678899999999999999999999999999999999999975 599


Q ss_pred             CCChHHHHHHHHHHHHHHhh
Q 046070          280 RVPEPIRQADIRSRDYLQKH  299 (309)
Q Consensus       280 RlPEPlR~Ad~~sr~~~r~~  299 (309)
                      |+|||+|+||+.||.++|.+
T Consensus       234 rvpEPIRqADi~sr~~l~~q  253 (261)
T KOG4417|consen  234 RVPEPIRQADIESRRLLREQ  253 (261)
T ss_pred             CCCCchhhhhHHHHHHHHHh
Confidence            99999999999999999843

>COG1515 Nfi Deoxyinosine 3'endonuclease (endonuclease V) [DNA replication, recombination, and repair]

Probab=100.00  E-value=3.4e-64  Score=455.13  Aligned_cols=205  Identities=39%  Similarity=0.657  Sum_probs=188.4

Q ss_pred             HHHHHHHHHHHHHhhccccccccCCCCCCCCCCCCCchhhcccccEEEEEeeeeecCCCCeEEEEEEEEeCCCceEEEEE
Q 046070           51 QLNQWTEIQDELKKRLITEDFFTWNLPNSTTTNTSTKEEEEVLLKYIGGVDMSFSKEDPSIACGCIVVLDLQTLQIVYED  130 (309)
Q Consensus        51 ~~~~~~~~Q~~L~~~vi~~d~~~~~~~~~~~~~~~~~~~~~~~~~~VaGvDvSf~~~~~~~a~Aa~VVl~~~~l~vv~~~  130 (309)
                      .+++++++|++|++++++++.+                    ++++|||+|+||.+  +..++||+|+++++++++++..
T Consensus         5 ~~e~~~~iQ~~l~~~i~l~~~~--------------------~v~~vagvDvsy~~--~~~~~aa~Vv~~~~~~~vie~~   62 (212)
T COG1515           5 TLEEAQEIQEELARSVVLEPDF--------------------EVRTVAGVDVSYED--GERGRAAAVVLDYPDLEVIETA   62 (212)
T ss_pred             CHHHHHHHHHHHhhheeccCCC--------------------CcceEEEEEEEecC--CCeEEEEEEEEEcCCCceEEEE
Confidence            4788999999999999999863                    58999999999983  4579999999999999999999


Q ss_pred             EEEEeeccCCCCccccccchHHHHHHHHHHHhhcCCCCCcEEEEecccccCCCCCCchhhHhhhcCCeeEEEeCCccccC
Q 046070          131 YSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLANLTTIGVGKNLHHVD  210 (309)
Q Consensus       131 ~~~~~~~~PYIPG~LAFRE~P~il~al~kL~~~~p~~~PdvilVDG~Gi~HPR~~GlAsHlGv~l~iPtIGVAKs~L~~d  210 (309)
                      +...+++||||||||||||+|++++++++|..+     ||+||||||||+|||++|||||+||.+++|||||||++|+++
T Consensus        63 v~~~~~~~PYIPGfLaFRE~p~~l~a~~~l~~~-----~d~ilVDG~GiaHPR~~GlAsH~Gv~l~~PtIGVAK~~L~gt  137 (212)
T COG1515          63 VVRGPVSFPYIPGFLAFRELPLLLKALEKLSVK-----PDLLLVDGHGIAHPRRLGLASHIGVLLDVPTIGVAKSRLCGT  137 (212)
T ss_pred             EEecccccCcccchhhhhhhHHHHHHHHhcCCC-----CCEEEEcCcceecCcccChhheeeeeeCCCceeEehhhhcCc
Confidence            999999999999999999999999999999885     999999999999999999999999999999999999999954


Q ss_pred             CccccccccccccccCCCCCeeeccCCCCcEEEEEEeecCCCCccEEEecCCCCCHHHHHHHHHHcC-CCCCChHHHHHH
Q 046070          211 GLTHSGVRQLLDAKENNNEDIIPLMGGSGSTWGVAMRSTPDTLKPIFISVGHCISLDTAVMIVKMTC-KYRVPEPIRQAD  289 (309)
Q Consensus       211 G~~~~~~~~~~~~~~~~~g~~~~l~~~~ge~vG~alrt~~~~~kPIyVS~Gh~isLetA~~iv~~~~-~~RlPEPlR~Ad  289 (309)
                      +.          ++....|.+.++. .+||++|++++|+ .+.+|+|||+||+|++++|++++++|+ .||+|||||+||
T Consensus       138 ~~----------~~~~~~g~~~~l~-~~gev~g~~l~t~-~~~~pi~vS~g~~i~l~sal~l~~~l~~~~rlpeptr~ad  205 (212)
T COG1515         138 PV----------EPESRRGAGKPLY-DKGEVLGGVLRTK-ERAKPIFVSPGHRISLPSALKLAQRLSKGYRLPEPTRLAD  205 (212)
T ss_pred             cc----------CcccccCcceeEe-cCCeEEEEEEEec-ccCCCeEEccCCccCHHHHHHHHHHHcccccCCCcccHHH
Confidence            42          3556778899886 4599999999987 468999999999999999999999998 689999999999


Q ss_pred             HHHHH
Q 046070          290 IRSRD  294 (309)
Q Consensus       290 ~~sr~  294 (309)
                      .+|++
T Consensus       206 ~~a~~  210 (212)
T COG1515         206 ILAKK  210 (212)
T ss_pred             Hhhhh
Confidence            99975

>PRK00766 hypothetical protein; Provisional

Probab=99.84  E-value=1.6e-20  Score=169.39  Aligned_cols=181  Identities=18%  Similarity=0.217  Sum_probs=136.0

Q ss_pred             ccEEEEEeeeeec--CCCCeEEEEEEEEeCCCceEEEEEEEEEeeccCCCCccccccchHHHHHHHHHHHhhcCCCCCcE
Q 046070           94 LKYIGGVDMSFSK--EDPSIACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQV  171 (309)
Q Consensus        94 ~~~VaGvDvSf~~--~~~~~a~Aa~VVl~~~~l~vv~~~~~~~~~~~PYIPG~LAFRE~P~il~al~kL~~~~p~~~Pdv  171 (309)
                      .-.|.|+|-||..  .+....+++ |||+.+  .+++ .+.+..++.   -|..|   +..+++++++.+.. |  +.++
T Consensus         8 ~irvlGidds~f~~~~~~~~~lvG-vv~r~~--~~id-Gv~~~~itv---dG~Da---T~~i~~mv~~~~~r-~--~i~~   74 (194)
T PRK00766          8 EIRVLGIDDGTFLFKSSEKVILVG-VVMRGG--DWVD-GVLSRWITV---DGLDA---TEAIIEMVNSSRHK-G--QLRV   74 (194)
T ss_pred             cceEEEEecCccccCCCCCEEEEE-EEEECC--eEEe-eEEEEEEEE---CCccH---HHHHHHHHHhcccc-c--ceEE
Confidence            3478999999754  234566666 778765  5676 778888888   89999   99999999874321 1  2469


Q ss_pred             EEEecccccCCCCCCchhhHhhhcCCeeEEEeCCccccCCccccccccccccccCCCCCeeeccCCCCcEEEEEEeecCC
Q 046070          172 LMVDGNGLLHPRGFGLASHIGVLANLTTIGVGKNLHHVDGLTHSGVRQLLDAKENNNEDIIPLMGGSGSTWGVAMRSTPD  251 (309)
Q Consensus       172 ilVDG~Gi~HPR~~GlAsHlGv~l~iPtIGVAKs~L~~dG~~~~~~~~~~~~~~~~~g~~~~l~~~~ge~vG~alrt~~~  251 (309)
                      ||+||..++..+-..+..-. ..+++|+|.|..++-..++++ +.++++|+..+.+..    ++-.-|+..-  +.+   
T Consensus        75 V~L~Git~agFNvvD~~~l~-~~tg~PVI~V~r~~p~~~~ie-~AL~k~f~~~~~R~~----~~~~~g~~~~--~~~---  143 (194)
T PRK00766         75 IMLDGITYGGFNVVDIEELY-RETGLPVIVVMRKKPDFEAIE-SALKKHFSDWEERIK----LIKKAGKIVE--LIT---  143 (194)
T ss_pred             EEECCEeeeeeEEecHHHHH-HHHCCCEEEEEecCCCHHHHH-HHHHHHCCCHHHHHH----HHHhCCCceE--ecc---
Confidence            99999999988888876654 899999999998887777764 567777866543211    2111122211  111   


Q ss_pred             CCccEEEecCCCCCHHHHHHHHHHcC-CCCCChHHHHHHHHHHHHHHhhc
Q 046070          252 TLKPIFISVGHCISLDTAVMIVKMTC-KYRVPEPIRQADIRSRDYLQKHQ  300 (309)
Q Consensus       252 ~~kPIyVS~Gh~isLetA~~iv~~~~-~~RlPEPlR~Ad~~sr~~~r~~~  300 (309)
                       .+|+|||+ |+||+++|.+++++|+ +||+|||||+||++|+.+.+...
T Consensus       144 -~~~vyvs~-~gi~l~~A~~lv~~~~~~~riPEPlR~Ahlia~~~~~ges  191 (194)
T PRK00766        144 -RGPLYIQA-AGIDPETAAEIVRLTSTRSLIPEPLRLAHLIASGVMLGES  191 (194)
T ss_pred             -CCCEEEEE-cCCCHHHHHHHHHHhccCCCCchhhHHHHHHHHHhhcccc
Confidence             18999999 9999999999999998 89999999999999999887553

>PF01949 DUF99: Protein of unknown function DUF99; InterPro: IPR002802 The function of the archaebacterial proteins in this family is unknown

Probab=99.75  E-value=3.8e-18  Score=153.30  Aligned_cols=180  Identities=19%  Similarity=0.237  Sum_probs=117.9

Q ss_pred             cEEEEEeeeeecC-CCCeEEEEEEEEeCCCceEEEEEEEEEeeccCCCCccccccchHHHHHHHHHHHhhcCCCCCcEEE
Q 046070           95 KYIGGVDMSFSKE-DPSIACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVLM  173 (309)
Q Consensus        95 ~~VaGvDvSf~~~-~~~~a~Aa~VVl~~~~l~vv~~~~~~~~~~~PYIPG~LAFRE~P~il~al~kL~~~~p~~~Pdvil  173 (309)
                      -+|.|+|-||... ++...+++ |||+..  .+++ .+....++.   -|..|   +..++++++.+...    +.++||
T Consensus         4 iRvlGidDs~f~~~~~~s~lvG-vv~r~~--~~id-Gv~~~~itv---dG~Da---T~~i~~m~~~~~r~----~i~~v~   69 (187)
T PF01949_consen    4 IRVLGIDDSPFPRSDGKSVLVG-VVMRGD--RRID-GVAFGRITV---DGMDA---TEAIIEMVKRLFRP----DIRVVM   69 (187)
T ss_dssp             SEEEEEEEEE-SS----EEEEE-EEEETT---EEE-EEEEEEE-T---T-S-H---HHHHHHHHCCTTTT----TEEEEE
T ss_pred             cEEEEEecCCCccCCCceEEEE-EEEeCC--eEEE-EEEEEEEEE---CCchH---HHHHHHHHHhcccC----cceEEE
Confidence            3689999999865 33455544 788765  5676 678889998   89999   99999999874433    368999


Q ss_pred             EecccccCCCCCCchhhHhhhcCCeeEEEeCCccccCCccccccccccccccCCCCCeeeccCCCCcEEEEEEeecCCCC
Q 046070          174 VDGNGLLHPRGFGLASHIGVLANLTTIGVGKNLHHVDGLTHSGVRQLLDAKENNNEDIIPLMGGSGSTWGVAMRSTPDTL  253 (309)
Q Consensus       174 VDG~Gi~HPR~~GlAsHlGv~l~iPtIGVAKs~L~~dG~~~~~~~~~~~~~~~~~g~~~~l~~~~ge~vG~alrt~~~~~  253 (309)
                      +||..++..+-..+-.-. ..+++|+|.|..+....++++ +.++++|+..+.+..    ++..-|+..-..+++    .
T Consensus        70 LdGit~agFNiiD~~~l~-~~tg~PVI~V~~~~p~~~~i~-~AL~~hF~d~~~R~~----~i~~~g~~~~v~~~~----~  139 (187)
T PF01949_consen   70 LDGITFAGFNIIDIERLY-EETGLPVIVVMRKEPNLEGIE-SALRKHFPDWEERLE----IIEKLGPREPVSTPT----G  139 (187)
T ss_dssp             ESSSEETTTEE--HHHHH-HHH---EEEEESS---HHHHH-HCCTT-STTHHHHHH----HHHHC---EEE---------
T ss_pred             ECCEeEEeeEEecHHHHH-HHHCCCEEEEEEeCCCHHHHH-HHHHHhCCCHHHHHH----HHHhCCCcEEeeecc----c
Confidence            999999988877776544 899999999998877666664 577888876543211    111114444333331    4


Q ss_pred             ccEEEecCCCCCHHHHHHHHHHcC-CCCCChHHHHHHHHHHHHHHhh
Q 046070          254 KPIFISVGHCISLDTAVMIVKMTC-KYRVPEPIRQADIRSRDYLQKH  299 (309)
Q Consensus       254 kPIyVS~Gh~isLetA~~iv~~~~-~~RlPEPlR~Ad~~sr~~~r~~  299 (309)
                      .+|||.. .+|++++|.+++++++ .+++|||+|+||++|+.+.+..
T Consensus       140 ~~vyv~~-~Gi~~~~A~~li~~~t~~g~iPEPLRvAhliA~~~~~ge  185 (187)
T PF01949_consen  140 GPVYVQS-WGIDLEEARELIRRTTLHGKIPEPLRVAHLIASAISRGE  185 (187)
T ss_dssp             TTEEEEE-ESS-HHHHHHHHHHC-SSSSS-HHHHHHHHHHHHHHT--
T ss_pred             ccEEEEE-ecCCHHHHHHHHHHHhccCCCcccHHHHHHHHHHhhcCC
Confidence            7999999 9999999999999998 7999999999999999998754

; PDB: 2QH9_A.

>COG1628 Endonuclease V homolog [Replication, recombination, and repair]

Probab=99.58  E-value=1.5e-14  Score=129.48  Aligned_cols=176  Identities=18%  Similarity=0.226  Sum_probs=130.7

Q ss_pred             ccEEEEEeeeeecCCCCeEEEEEEEEeCCCceEEEEEEEEEeeccCCCCccccccchHHHHHHHHHHHhhcCCCCCcEEE
Q 046070           94 LKYIGGVDMSFSKEDPSIACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVLM  173 (309)
Q Consensus        94 ~~~VaGvDvSf~~~~~~~a~Aa~VVl~~~~l~vv~~~~~~~~~~~PYIPG~LAFRE~P~il~al~kL~~~~p~~~Pdvil  173 (309)
                      --++.|+|-|+....+..++.+.+++..+  .+++ .+....++.   -|..+   +..+.+++++++..    +.++||
T Consensus         8 ~irvlG~DD~~f~~~~~~~~~vG~v~r~~--~~v~-gv~~~~i~v---DG~D~---T~~i~~~v~~~~~~----~~rvVl   74 (185)
T COG1628           8 EIRVLGIDDGPFSRGDDKVTLVGVVMRGD--RVVD-GVAFSLITV---DGLDV---TDAISDMVNRSKRR----DLRVVL   74 (185)
T ss_pred             ceEEEEEecCccCCCCceEEEEEEEEECC--eEEE-eeEEEEEEe---cCchH---HHHHHHHHHHhhcc----cccEEE
Confidence            35789999998765433455566788766  5665 666777877   79999   99999999999875    379999


Q ss_pred             EecccccCCCCCCchhhHhhhcCCeeEEEeCCccccCCccccccccccccccCCCCCeeeccCCCCcEEEEEEeecCCCC
Q 046070          174 VDGNGLLHPRGFGLASHIGVLANLTTIGVGKNLHHVDGLTHSGVRQLLDAKENNNEDIIPLMGGSGSTWGVAMRSTPDTL  253 (309)
Q Consensus       174 VDG~Gi~HPR~~GlAsHlGv~l~iPtIGVAKs~L~~dG~~~~~~~~~~~~~~~~~g~~~~l~~~~ge~vG~alrt~~~~~  253 (309)
                      .||.-.+..+-+.+-.-. ..+++|+|-|..+.-.++.+. +.++++|...+.+.    .++-.=|+.    ..   -.+
T Consensus        75 LdGIt~aGFNivDi~~l~-~~tg~PVi~V~~k~P~~e~i~-~Al~k~f~d~e~R~----rii~~~g~~----~~---~~~  141 (185)
T COG1628          75 LDGITFAGFNIVDIEALY-KETGLPVIVVYRKKPDIERIE-SALRKHFDDAEERI----RIIESAGEI----EK---VIT  141 (185)
T ss_pred             ECCeeeccceEecHHHHH-HhhCCcEEEEEecCCCHHHHH-HHHHHhCCCHHHHH----HHHHhCCCc----ee---ecC
Confidence            999999988888776655 789999999998876654432 45666665543221    111010222    12   123


Q ss_pred             ccEEEecCCCCCHHHHHHHHHHcC-CCCCChHHHHHHHHHHHHH
Q 046070          254 KPIFISVGHCISLDTAVMIVKMTC-KYRVPEPIRQADIRSRDYL  296 (309)
Q Consensus       254 kPIyVS~Gh~isLetA~~iv~~~~-~~RlPEPlR~Ad~~sr~~~  296 (309)
                      +|+|+-. .+|++++|.++++.++ .+++|||+|+||++|+.+.
T Consensus       142 ~~iy~q~-~Gi~~~~A~~ii~~~t~~gkiPEpLRvAhlIAs~~~  184 (185)
T COG1628         142 GPIYIQA-AGIEPSEAERIIRKTTIRGKIPEPLRVAHLIASAVG  184 (185)
T ss_pred             CCEEEEE-ecCCHHHHHHHHHHhcccCCCCchhHHHHHHHHhhc
Confidence            4999999 9999999999999998 8999999999999998753

>PF08459 UvrC_HhH_N: UvrC Helix-hairpin-helix N-terminal; InterPro: IPR001162 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products []

Probab=97.11  E-value=0.00069  Score=59.75  Aligned_cols=104  Identities=21%  Similarity=0.341  Sum_probs=52.2

Q ss_pred             ccEEEEEeeeeecCCCCeEEEEEEEEeCCC-ceEEEEEEEEEeeccCCCCccccccchHHHHHHHHHHHhhcCCCCCcEE
Q 046070           94 LKYIGGVDMSFSKEDPSIACGCIVVLDLQT-LQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVL  172 (309)
Q Consensus        94 ~~~VaGvDvSf~~~~~~~a~Aa~VVl~~~~-l~vv~~~~~~~~~~~PYIPG~LAFRE~P~il~al~kL~~~~p~~~Pdvi  172 (309)
                      +++|-++|+|...+.  .++|++||+.-.. .+--|..|.+....-  .--|-+++|+  +.+-++++.... +..||+|
T Consensus        11 P~rIE~fDiSh~~G~--~~Vgs~Vvf~~G~~~k~~YR~f~i~~~~~--~dDy~~M~Ev--l~RR~~~~~~~~-~~lPDLi   83 (155)
T PF08459_consen   11 PRRIECFDISHIQGS--DTVGSMVVFENGKPDKSEYRRFNIKTVDG--GDDYAAMREV--LTRRFKRLKEEK-EPLPDLI   83 (155)
T ss_dssp             -SEEEEEEEEECTTT--CEEEEEEEEETTEE-GGG-EEEEEE--ST--T-HHHHHHHH--HHHHHCCCHHHT-----SEE
T ss_pred             CCEEEEEECcccCCc--ccEEEEEEEECCccChhhCceEecCCCCC--CcHHHHHHHH--HHHHHhcccccC-CCCCCEE
Confidence            589999999998653  5788999996531 122234444443322  2455565553  334444443321 1259999


Q ss_pred             EEecccccCCCCCCchhhH--hhhcCCeeEEEeCCccc
Q 046070          173 MVDGNGLLHPRGFGLASHI--GVLANLTTIGVGKNLHH  208 (309)
Q Consensus       173 lVDG~Gi~HPR~~GlAsHl--Gv~l~iPtIGVAKs~L~  208 (309)
                      ||||= ..|   ...|--.  -.-+++|+||+||+.-.
T Consensus        84 lIDGG-~gQ---l~aa~~~l~~lgl~i~viglaK~~~~  117 (155)
T PF08459_consen   84 LIDGG-KGQ---LNAAKEVLKELGLNIPVIGLAKNDEH  117 (155)
T ss_dssp             EESSS-HHH---HHHHHHHHHCTT----EEEEESSSSE
T ss_pred             EEcCC-HHH---HHHHHHHHHHcCCCeEEEEEEecccc
Confidence            99982 221   1111111  11235899999999654

The UvrC proteins contain 4 conserved regions: a central region which interacts with UvrB (Uvr domain), a Helix hairpin Helix (HhH) domain important for 5 prime incision of damage DNA and the homology regions 1 and 2 of unknown function. UvrC homology region 2 is specific for UvrC proteins, whereas UvrC homology region 1 is also shared by few other nucleases. Proteins that contain the UvrC homology region 1, IPR000305 from INTERPRO, are listed below: Prokaryotic UvrC proteins. Bacteriophage T4 END2 protein. Small subunit of ribonucleotide reductase enzyme. T4 TEV1 protein. Endonuclease specific to the thymidylate synthase (td) gene splice junction. Found in putative intron-homing endonucleases encoded by group I introns of fungi and phage. Mycobacterium hypothetical protein Y002. Exonuclease by similarity. Bacillus subtilis hypothetical protein YURQ. ; GO: 0003677 DNA binding, 0004518 nuclease activity, 0006289 nucleotide-excision repair; PDB: 3C65_A 2NRZ_A 2NRR_A 2NRX_A 2NRV_A 2NRT_A 2NRW_A.

>PRK14672 uvrC excinuclease ABC subunit C; Provisional

Probab=96.44  E-value=0.008  Score=63.91  Aligned_cols=102  Identities=20%  Similarity=0.320  Sum_probs=59.2

Q ss_pred             ccEEEEEeeeeecCCCCeEEEEEEEEeCCCc-eEEEEEEEEEeeccCCCCccccccchHHHHHHHHHHHhhcCCCCCcEE
Q 046070           94 LKYIGGVDMSFSKEDPSIACGCIVVLDLQTL-QIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVL  172 (309)
Q Consensus        94 ~~~VaGvDvSf~~~~~~~a~Aa~VVl~~~~l-~vv~~~~~~~~~~~PYIPG~LAFRE~P~il~al~kL~~~~p~~~Pdvi  172 (309)
                      .++|-++|+|-..+.  ..||++||+.-... +--|..|.+..+.. -+--|-++||+  +.+-+.++...  .-.||+|
T Consensus       454 p~rIE~fDiSh~~G~--~~VasmVvf~~G~p~k~~YR~f~ik~~~~-~~DD~asM~Ev--l~RR~~r~~~~--~~~PDLi  526 (691)
T PRK14672        454 PTLIEGFDISHLGGK--YTVASLICFKNGAPDTKNYRLFNLRAHDT-RIDDFASMREA--IARRYTHTPEG--YTLPDLI  526 (691)
T ss_pred             CCeEEEEECCccCCc--CceEEEEEEECCccChhhCCeeeccCCCC-CCchHHHHHHH--HHHHhhccccc--CCCCCEE
Confidence            578999999998653  47889999964311 22233333332221 13467777774  33444443211  0249999


Q ss_pred             EEecccccCCCCCCchhhHhhhc--CCeeEEEeCCc
Q 046070          173 MVDGNGLLHPRGFGLASHIGVLA--NLTTIGVGKNL  206 (309)
Q Consensus       173 lVDG~Gi~HPR~~GlAsHlGv~l--~iPtIGVAKs~  206 (309)
                      |||| |..|   +..|.++=..+  ++|.||+||..
T Consensus       527 lIDG-GkgQ---l~aa~~vl~elgl~i~vigLaKr~  558 (691)
T PRK14672        527 LVDG-GIGH---VSAAQHVLDALGLSIPLVGLAKRA  558 (691)
T ss_pred             EEeC-CHHH---HHHHHHHHHHcCCCCcEEEEEecc
Confidence            9999 3332   23344432223  68999999953

>PRK12306 uvrC excinuclease ABC subunit C; Reviewed

Probab=96.35  E-value=0.0087  Score=61.91  Aligned_cols=101  Identities=15%  Similarity=0.209  Sum_probs=56.9

Q ss_pred             ccEEEEEeeeeecCCCCeEEEEEEEEeCCC-ceEEEEEEEEEeeccCCCCccccccchHHHHHHHHHHHhhcCCCCCcEE
Q 046070           94 LKYIGGVDMSFSKEDPSIACGCIVVLDLQT-LQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVL  172 (309)
Q Consensus        94 ~~~VaGvDvSf~~~~~~~a~Aa~VVl~~~~-l~vv~~~~~~~~~~~PYIPG~LAFRE~P~il~al~kL~~~~p~~~Pdvi  172 (309)
                      .++|=|+|+|...+.  .+||++||+.-.. .+--|..|.+..+.-  .--|-+++|+  +.+-+.++..+.+ ..||+|
T Consensus       366 p~rIE~fDiSh~~G~--~~V~smVvf~~G~p~k~~YR~f~Ik~~~~--~dDy~~m~Ev--l~RR~~r~~~~~~-~~PDLi  438 (519)
T PRK12306        366 PNVIECFDISHLSGT--STVGSMVQFRNGKPDKKNYRRFKIKTVEG--IDDFASIAEV--VRRRYSRLLEENS-ELPDLI  438 (519)
T ss_pred             CCeEEEEECCccCCC--CceEEEEEEeCCccChhhcCeeecCCCCC--CCHHHHHHHH--HHHHHhhcccccC-CCCCEE
Confidence            578999999997653  5788999996431 122333343332221  2456777664  3344444432100 259999


Q ss_pred             EEecccccCCCCCCchhhHhhh--cCCeeEEEeCC
Q 046070          173 MVDGNGLLHPRGFGLASHIGVL--ANLTTIGVGKN  205 (309)
Q Consensus       173 lVDG~Gi~HPR~~GlAsHlGv~--l~iPtIGVAKs  205 (309)
                      |||| |..|   ++.|.-.=..  +++|+||+||.
T Consensus       439 lIDG-GkgQ---l~aa~~~l~elg~~i~viglaK~  469 (519)
T PRK12306        439 VIDG-GKGQ---LSSAFKELRKLGLKIPLISIAKR  469 (519)
T ss_pred             EEeC-CHHH---HHHHHHHHHHcCCCCcEEEEEcC
Confidence            9998 2221   1112111011  26899999994

>TIGR00194 uvrC excinuclease ABC, C subunit

Probab=96.29  E-value=0.0084  Score=62.70  Aligned_cols=102  Identities=25%  Similarity=0.398  Sum_probs=58.1

Q ss_pred             cEEEEEeeeeecCCCCeEEEEEEEEeCCC-ceEEEEEEEEEeeccCCCCccccccchHHHHHHHHHHHhhcCCCCCcEEE
Q 046070           95 KYIGGVDMSFSKEDPSIACGCIVVLDLQT-LQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVLM  173 (309)
Q Consensus        95 ~~VaGvDvSf~~~~~~~a~Aa~VVl~~~~-l~vv~~~~~~~~~~~PYIPG~LAFRE~P~il~al~kL~~~~p~~~Pdvil  173 (309)
                      ++|-++|+|-..+.  .+||++||+.-.. .+--|..|.+..+.-  .--|-++||+  +.+-+.++..+.+.-.||+||
T Consensus       382 ~rIE~fDiSh~~G~--~~V~smVvf~~G~~~k~~YR~f~i~~~~~--~dDya~m~Ev--l~RR~~r~~~~~~~~~PDLil  455 (574)
T TIGR00194       382 KRIEIFDISHIDGS--QTVGSMVVFEDGKPLKASYRRYNINSITG--GDDYAAMREV--LRRRYSSIQKKNNLPLPDLIL  455 (574)
T ss_pred             CEEEEEECCccCCC--cceEEEEEEeCCccChhhCCeeecCCCCC--CCHHHHHHHH--HHHHHhhhccccCCCCCCEEE
Confidence            89999999998653  5889999996532 122333343333222  1356677764  334444443211102599999


Q ss_pred             EecccccCCCCCCchh----hHhhhcCCeeEEEeCCc
Q 046070          174 VDGNGLLHPRGFGLAS----HIGVLANLTTIGVGKNL  206 (309)
Q Consensus       174 VDG~Gi~HPR~~GlAs----HlGv~l~iPtIGVAKs~  206 (309)
                      ||| |..|   .+.|.    -+|+..++|.||+||..
T Consensus       456 iDG-GkgQ---l~aa~~~l~~lg~~~~i~viglaK~~  488 (574)
T TIGR00194       456 IDG-GKGQ---LNAALEVLKSLGVVNKPIVIGLAKAK  488 (574)
T ss_pred             EeC-CHHH---HHHHHHHHHHcCCCCCCcEEEEEecC
Confidence            998 2221   11221    12221257999999964

This family consists of the DNA repair enzyme UvrC, an ABC excinuclease subunit which interacts with the UvrA/UvrB complex to excise UV-damaged nucleotide segments.

>PRK14667 uvrC excinuclease ABC subunit C; Provisional

Probab=96.26  E-value=0.0084  Score=62.61  Aligned_cols=101  Identities=20%  Similarity=0.321  Sum_probs=57.9

Q ss_pred             ccEEEEEeeeeecCCCCeEEEEEEEEeCCC-ceEEEEEEEEEeeccCCCCccccccchHHHHHHHHHHHhhcCCCCCcEE
Q 046070           94 LKYIGGVDMSFSKEDPSIACGCIVVLDLQT-LQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVL  172 (309)
Q Consensus        94 ~~~VaGvDvSf~~~~~~~a~Aa~VVl~~~~-l~vv~~~~~~~~~~~PYIPG~LAFRE~P~il~al~kL~~~~p~~~Pdvi  172 (309)
                      .++|-++|+|...+.  .+||++||+.-.. .+--|..|.+..+.  -.--|-++||+  +.+-+.++..+.+ ..||+|
T Consensus       361 p~rIE~fDiSh~~G~--~~V~smVvf~~G~~~k~~YR~f~i~~~~--~~dD~~~m~Ev--l~RR~~r~~~~~~-~~PDLi  433 (567)
T PRK14667        361 PERIEGFDISHFYGE--FTVGSCVVWEDGSMNKKEYRRYKIKTVD--GIDDYASLREV--LTRRARRYKEGEN-PMPDLW  433 (567)
T ss_pred             CCeEEEEECcccCCC--cceEEEEEEECCccChhhCCeeecCCCC--CCCHHHHHHHH--HHHHhhhccccCC-CCCCEE
Confidence            578999999997653  5788999996431 12223333333221  12457777774  3344544432111 249999


Q ss_pred             EEecccccCCCCCCchhhHhhh--cCCeeEEEeCC
Q 046070          173 MVDGNGLLHPRGFGLASHIGVL--ANLTTIGVGKN  205 (309)
Q Consensus       173 lVDG~Gi~HPR~~GlAsHlGv~--l~iPtIGVAKs  205 (309)
                      |||| |..|   .+.|.-.=..  +++|.||.||+
T Consensus       434 liDG-GkgQ---l~aa~~~l~~lg~~i~v~glaK~  464 (567)
T PRK14667        434 LIDG-GKGQ---LSVGIEVRDRLGLNIKVFSLAKK  464 (567)
T ss_pred             EEeC-CHHH---HHHHHHHHHHcCCCCcEEEEEec
Confidence            9999 3221   1222211111  36899999995

>PRK14670 uvrC excinuclease ABC subunit C; Provisional

Probab=96.23  E-value=0.0095  Score=62.33  Aligned_cols=102  Identities=17%  Similarity=0.286  Sum_probs=57.6

Q ss_pred             ccEEEEEeeeeecCCCCeEEEEEEEEeCCC-ceEEEEEEEEEeeccCC-CCccccccchHHHHHHHHHHHhhcCCCCCcE
Q 046070           94 LKYIGGVDMSFSKEDPSIACGCIVVLDLQT-LQIVYEDYSLLRLQVPY-VPGFLAFREAPVLLSLLDNMKKRANHFYPQV  171 (309)
Q Consensus        94 ~~~VaGvDvSf~~~~~~~a~Aa~VVl~~~~-l~vv~~~~~~~~~~~PY-IPG~LAFRE~P~il~al~kL~~~~p~~~Pdv  171 (309)
                      .++|-++|+|...+.  .+||++||+.-.. -+--|..|.+..+. +. +--|-++||+  +.+-+.++..+. .-.||+
T Consensus       358 p~rIE~fDiSh~~G~--~~V~smVvf~~G~~~k~~YRkf~ik~~~-~~~~DD~a~M~Ev--l~RR~~r~~~~~-~~~PDL  431 (574)
T PRK14670        358 PKTIEGFDIAHLNGQ--KTVASLVTFKMGKPFKDGYRVYKINSLL-KGEIDDFKAIKEV--ISRRYSKLINEQ-LELPNL  431 (574)
T ss_pred             CCeEEEEECCccCCC--CceEEEEEEECCccChhhCCeeeccCCC-CCCCCHHHHHHHH--HHHHHhhccccc-CCCCCE
Confidence            479999999998653  4788999996431 12223333333221 21 2357777774  334454443210 025999


Q ss_pred             EEEecccccCCCCCCchh----hHhhhcCCeeEEEeCC
Q 046070          172 LMVDGNGLLHPRGFGLAS----HIGVLANLTTIGVGKN  205 (309)
Q Consensus       172 ilVDG~Gi~HPR~~GlAs----HlGv~l~iPtIGVAKs  205 (309)
                      ||||| |..|   ++.|.    -+|+.-++|.||+||+
T Consensus       432 ilIDG-GkgQ---l~aa~~vl~~lg~~~~i~v~gLaK~  465 (574)
T PRK14670        432 ILIDG-GKGQ---LNAAYSILKGLKIENKVKVCALAKK  465 (574)
T ss_pred             EEEeC-CHHH---HHHHHHHHHHcCCCCCceEEEEecC
Confidence            99998 3221   11111    2222112899999995

>PRK14671 uvrC excinuclease ABC subunit C; Provisional

Probab=96.15  E-value=0.017  Score=60.87  Aligned_cols=101  Identities=17%  Similarity=0.176  Sum_probs=57.8

Q ss_pred             ccEEEEEeeeeecCCCCeEEEEEEEEeCCCc-eEEEEEEEEEeeccCCCCccccccchHHHHHHHHHHHhhcCCCCCcEE
Q 046070           94 LKYIGGVDMSFSKEDPSIACGCIVVLDLQTL-QIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVL  172 (309)
Q Consensus        94 ~~~VaGvDvSf~~~~~~~a~Aa~VVl~~~~l-~vv~~~~~~~~~~~PYIPG~LAFRE~P~il~al~kL~~~~p~~~Pdvi  172 (309)
                      .++|-|+|+|-..+.  .+||++||+.-... +--|..|.+..+.-  .--|-++||+  +.+-+.++..+. .-.||+|
T Consensus       415 p~rIE~fDiSh~~G~--~~V~smVvf~~G~~~k~~YR~f~ik~~~~--~dDy~~m~Ev--l~RR~~r~~~~~-~~~PDLi  487 (621)
T PRK14671        415 PRRIECFDNSHFQGT--DYVSSMVCFVDGKPKKSDYRKFKLRSFEG--SDDYAAMREV--VTRRYSGSLAEE-LPLPDLI  487 (621)
T ss_pred             CCEEEEEECCccCCC--CceEEEEEEECCccChhhCCeeecCCCCC--CCHHHHHHHH--HHHHhhcccccc-CCCCCEE
Confidence            579999999998653  57899999965321 22233333332211  2457777774  334444443110 0259999


Q ss_pred             EEecccccCCCCCCchhhHhhh--cCCeeEEEeCC
Q 046070          173 MVDGNGLLHPRGFGLASHIGVL--ANLTTIGVGKN  205 (309)
Q Consensus       173 lVDG~Gi~HPR~~GlAsHlGv~--l~iPtIGVAKs  205 (309)
                      |||| |..|   ++.|.-+=..  +++|+||.||+
T Consensus       488 lIDG-GkgQ---l~aa~~vl~~lg~~i~viglaK~  518 (621)
T PRK14671        488 VIDG-GKGQ---VNSAWKVLQELGLSVPVIGLAKR  518 (621)
T ss_pred             EEeC-CHHH---HHHHHHHHHHcCCCCcEEEEEec
Confidence            9998 3221   2222222112  26899999994

>PRK14668 uvrC excinuclease ABC subunit C; Provisional

Probab=96.10  E-value=0.017  Score=60.56  Aligned_cols=101  Identities=20%  Similarity=0.231  Sum_probs=57.7

Q ss_pred             ccEEEEEeeeeecCCCCeEEEEEEEEeCCCceEEEEEEEEEeeccCCCCccccccchHHHHHHHHHHHhhcC-CCCCcEE
Q 046070           94 LKYIGGVDMSFSKEDPSIACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRAN-HFYPQVL  172 (309)
Q Consensus        94 ~~~VaGvDvSf~~~~~~~a~Aa~VVl~~~~l~vv~~~~~~~~~~~PYIPG~LAFRE~P~il~al~kL~~~~p-~~~Pdvi  172 (309)
                      .++|-++|+|-..+.  .+||++||+.-.  +.--..+..-++.-. .--|-++||+  +.+-+.++..+.+ ...||+|
T Consensus       375 p~rIE~fDiSh~~G~--~~V~s~Vvf~~G--~~~k~~YR~f~i~~~-~dD~~~m~Ev--l~RR~~r~~~~~~~~~~PDLi  447 (577)
T PRK14668        375 PERIEGFDVSHAQGR--AVVGSNVCFVDG--SAETADYRRKKLTER-NDDYANMREL--VRWRAERAVEGRDDRPDPDLL  447 (577)
T ss_pred             CCEEEEEECCccCCC--CceEEEEEEECC--ccCHHHcCeecCCCC-CChHHHHHHH--HHHHHHhhhccccCCCCCCEE
Confidence            578999999997653  578899999653  222222333333321 2456677764  3445555432200 0259999


Q ss_pred             EEecccccCCCCCCchhhH--hhhcCCeeEEEeCC
Q 046070          173 MVDGNGLLHPRGFGLASHI--GVLANLTTIGVGKN  205 (309)
Q Consensus       173 lVDG~Gi~HPR~~GlAsHl--Gv~l~iPtIGVAKs  205 (309)
                      |||| |..|   .+.|.-+  ..-+++|+||.||.
T Consensus       448 liDG-G~gQ---l~aa~~~l~elg~~i~v~glaK~  478 (577)
T PRK14668        448 LIDG-GDGQ---LGAARDALAETGWDVPAIALAKA  478 (577)
T ss_pred             EEeC-CHHH---HHHHHHHHHHcCCCCcEEEEEcC
Confidence            9998 3321   1222211  11127899999995

>PRK14669 uvrC excinuclease ABC subunit C; Provisional

Probab=96.02  E-value=0.028  Score=59.47  Aligned_cols=100  Identities=19%  Similarity=0.302  Sum_probs=56.9

Q ss_pred             ccEEEEEeeeeecCCCCeEEEEEEEEeCCC-ceEEEEEEEEEeeccCCCCccccccchHHHHHHHHHHHhhcCCCCCcEE
Q 046070           94 LKYIGGVDMSFSKEDPSIACGCIVVLDLQT-LQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVL  172 (309)
Q Consensus        94 ~~~VaGvDvSf~~~~~~~a~Aa~VVl~~~~-l~vv~~~~~~~~~~~PYIPG~LAFRE~P~il~al~kL~~~~p~~~Pdvi  172 (309)
                      .++|-++|+|...+.  .+||++||+.-.. .+--|..|.+..+.  -.--|-++||+  +.+-+.++..+. .-.||+|
T Consensus       396 p~rIE~fDiSh~~G~--~~V~smVvf~~G~~~k~~YRkf~Ik~~~--~~DDya~M~Ev--l~RR~~r~~~~~-~~~PDLi  468 (624)
T PRK14669        396 PSRIECFDISHIQGA--ETVASMVVWEDGKMKKSDYRKFIIKTVV--GVDDFASMREV--VTRRYSRLQEEK-QPMPGLV  468 (624)
T ss_pred             CCeEEEEECCccCCC--CceEEEEEEECCccChhhCCeeecCCCC--CCCHHHHHHHH--HHHHhhcccccc-CCCCCEE
Confidence            479999999997653  5788999996431 12223333333221  12457777774  334454443221 1259999


Q ss_pred             EEecccccCCCCCCchh----hHhhhcCCeeEEEeCC
Q 046070          173 MVDGNGLLHPRGFGLAS----HIGVLANLTTIGVGKN  205 (309)
Q Consensus       173 lVDG~Gi~HPR~~GlAs----HlGv~l~iPtIGVAKs  205 (309)
                      |||| |..|   .+.|-    -+|+. ++|+||+||.
T Consensus       469 lIDG-GkgQ---l~aa~~vl~elgl~-~i~vigLaK~  500 (624)
T PRK14669        469 LIDG-GLGQ---LHAAAEALEAIGIT-DQPLASIAKR  500 (624)
T ss_pred             EEeC-CHHH---HHHHHHHHHHcCCC-CCcEEEEecC
Confidence            9998 2221   11111    12211 4899999994

>PRK00558 uvrC excinuclease ABC subunit C; Validated

Probab=95.96  E-value=0.011  Score=62.07  Aligned_cols=103  Identities=18%  Similarity=0.258  Sum_probs=58.3

Q ss_pred             cccEEEEEeeeeecCCCCeEEEEEEEEeCCC-ceEEEEEEEEEeeccCCCCccccccchHHHHHHHHHHHhhcCCCCCcE
Q 046070           93 LLKYIGGVDMSFSKEDPSIACGCIVVLDLQT-LQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQV  171 (309)
Q Consensus        93 ~~~~VaGvDvSf~~~~~~~a~Aa~VVl~~~~-l~vv~~~~~~~~~~~PYIPG~LAFRE~P~il~al~kL~~~~p~~~Pdv  171 (309)
                      .+++|-++|+|-..+.  .+||++||+.-.. .+--|..|.+..+.-  .--|-++||+  +.+-+.++..+. +..||+
T Consensus       382 ~p~rIE~fDiSh~~G~--~~V~smVvf~~G~~~k~~YR~f~i~~~~~--~dDya~m~Ev--l~RR~~~~~~~~-~~~PDL  454 (598)
T PRK00558        382 PPYRIECFDISHIQGT--ATVASMVVFEDGGPDKSEYRRYNIKGVTG--GDDYAAMREV--LTRRYSRLLKEF-GPLPDL  454 (598)
T ss_pred             CCCEEEEEECCccCCC--cceEEEEEEECCccChhhCCeeecCCCCC--CCHHHHHHHH--HHHHhhcccccc-CCCCCE
Confidence            3589999999987653  5789999996531 122233333332211  2456666664  334455543211 125999


Q ss_pred             EEEecccccCCCCCCchhhH--hhhcCCeeEEEeCCc
Q 046070          172 LMVDGNGLLHPRGFGLASHI--GVLANLTTIGVGKNL  206 (309)
Q Consensus       172 ilVDG~Gi~HPR~~GlAsHl--Gv~l~iPtIGVAKs~  206 (309)
                      ||||| |..|   ++.|.-+  ..-+++|+||+||..
T Consensus       455 iliDG-GkgQ---l~~a~~~l~~lg~~i~v~glaK~~  487 (598)
T PRK00558        455 ILIDG-GKGQ---LNAAKEVLEELGLDIPVVGLAKGD  487 (598)
T ss_pred             EEEeC-CHHH---HHHHHHHHHHCCCCCcEEEEEecC
Confidence            99998 2221   1122111  011369999999965

>COG0322 UvrC Nuclease subunit of the excinuclease complex [DNA replication, recombination, and repair]

Probab=95.13  E-value=0.021  Score=59.83  Aligned_cols=99  Identities=20%  Similarity=0.279  Sum_probs=59.0

Q ss_pred             ccEEEEEeeeeecCCCCeEEEEEEEEeCCCceEEEEEEEEEeec-cCCCCccccccchHHHHHHHHHHHhhcCCCCCcEE
Q 046070           94 LKYIGGVDMSFSKEDPSIACGCIVVLDLQTLQIVYEDYSLLRLQ-VPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVL  172 (309)
Q Consensus        94 ~~~VaGvDvSf~~~~~~~a~Aa~VVl~~~~l~vv~~~~~~~~~~-~PYIPG~LAFRE~P~il~al~kL~~~~p~~~Pdvi  172 (309)
                      +..|=+.|+|...+.  .++|++||+.-.  ...-..+-.-.+. .| .--|-++||+  +-+-+.++...   -.||||
T Consensus       379 p~rIE~~D~Sh~~g~--~~V~smvvf~~g--~~~k~~YRry~i~~~~-~dDya~m~ev--l~RR~~~~~~~---~~Pdli  448 (581)
T COG0322         379 PYRIECFDISHIQGE--DTVGSMVVFEDG--GPSKKDYRRYNIKITG-GDDYASMREV--LTRRYSRLLKE---ELPDLI  448 (581)
T ss_pred             ceeEEEeecCccccc--cceeEEEEEcCC--CCChhhcccccccCCC-CchHHHHHHH--HHHHhhhcccc---CCCCEE
Confidence            568999999998763  578899998543  1111222233333 11 1238888885  33444444332   259999


Q ss_pred             EEecccccCCCCCCchhhHhh--hcCCeeEEEeCCc
Q 046070          173 MVDGNGLLHPRGFGLASHIGV--LANLTTIGVGKNL  206 (309)
Q Consensus       173 lVDG~Gi~HPR~~GlAsHlGv--~l~iPtIGVAKs~  206 (309)
                      +||| |..   -+..|-.+=.  -+++|.||+||..
T Consensus       449 ~iDG-Gkg---Ql~~a~~vl~~l~~~~~viglaK~~  480 (581)
T COG0322         449 LIDG-GKG---QLNAAKEVLKELGLDIPVIGLAKGE  480 (581)
T ss_pred             EEeC-CHH---HHHHHHHHHHHcCCCccEEEEEecC
Confidence            9998 322   1233333322  3488999999985

>PF09376 NurA: NurA domain; InterPro: IPR018977 This domain is found in several uncharacterised proteins and in NurA, a nuclease exhibiting both single-stranded endonuclease activity and 5'-3' exonuclease activity on single-stranded and double-stranded DNA from the hyperthermophilic archaeon Sulfolobus acidocaldarius []

Probab=94.69  E-value=0.67  Score=40.94  Aligned_cols=54  Identities=15%  Similarity=0.074  Sum_probs=34.6

Q ss_pred             CcEEEEEEeecCCCCccEEEecCCCCCHHHHHHHHHHc----C-CCCCChHHHHHHHHHH
Q 046070          239 GSTWGVAMRSTPDTLKPIFISVGHCISLDTAVMIVKMT----C-KYRVPEPIRQADIRSR  293 (309)
Q Consensus       239 ge~vG~alrt~~~~~kPIyVS~Gh~isLetA~~iv~~~----~-~~RlPEPlR~Ad~~sr  293 (309)
                      .++.-+.+|.. .+..+++|-.=..++.+...+++..+    . ...+|.||.+||..||
T Consensus       188 ~~~~~~yv~~~-~~~~~~rvE~p~~~~~~~~~~~l~~l~~~~~~~~GyP~~L~~Ad~~ak  246 (247)
T PF09376_consen  188 YEIYFFYVRLS-PGGPVLRVEIPRFVSSDEIDEILSRLASNDLSGRGYPYPLDLADELAK  246 (247)
T ss_dssp             HEEEEEEEESS-TTSTEEEEECCCHHCHHHHHHHHHHHH--TTEETTCEHHHHHHHHHHS
T ss_pred             ccEEEEEEEEC-CCCceEEEEecccccchhHHHHHHHHhhcccCCCCCchHHHHhccCCC
Confidence            34666777763 35678888742233345555554332    2 4789999999999875

; PDB: 1ZUP_B 2YGK_A 3TAZ_B 3TAL_A 3TAI_B.

>PRK14666 uvrC excinuclease ABC subunit C; Provisional

Probab=93.08  E-value=0.34  Score=51.99  Aligned_cols=97  Identities=14%  Similarity=0.123  Sum_probs=51.5

Q ss_pred             ccEEEEEeeeeecCCCCeEEEEEEEEeCCCc-eEEEEEEEEEeeccCCCCccccccchHHHHHHHHHHHhhcCCCCCcEE
Q 046070           94 LKYIGGVDMSFSKEDPSIACGCIVVLDLQTL-QIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVL  172 (309)
Q Consensus        94 ~~~VaGvDvSf~~~~~~~a~Aa~VVl~~~~l-~vv~~~~~~~~~~~PYIPG~LAFRE~P~il~al~kL~~~~p~~~Pdvi  172 (309)
                      .++|-++|+|...+.  .++|++||+.-... +--|..|.+..+ -+  --|-++||+  +   .+++++. |. .||+|
T Consensus       472 p~rIE~~DiSh~~G~--~~v~~mVvf~~G~p~k~~YR~f~i~~~-~~--dD~~~m~ev--~---~RR~~~~-~~-~PDLi  539 (694)
T PRK14666        472 PHRIEAVDVSHTGGR--NTRVGMVVFEDGKPARDAYRTYAFEDG-EG--DDYGTLAAW--A---GRRVESG-PP-WPDLL  539 (694)
T ss_pred             CCEEEEEECcccCCc--CceEEEEEEECCccChhhCCeeeCCCC-CC--ChHHHHHHH--H---HHHhcCC-CC-CCCEE
Confidence            578999999997653  46788999865321 222333333222 11  334444443  2   2223221 22 49999


Q ss_pred             EEecccccCCCCCCchhhHhhh--cC--CeeEEEeCCc
Q 046070          173 MVDGNGLLHPRGFGLASHIGVL--AN--LTTIGVGKNL  206 (309)
Q Consensus       173 lVDG~Gi~HPR~~GlAsHlGv~--l~--iPtIGVAKs~  206 (309)
                      ||||= ..|   .+.|-..=..  ++  +|+||+||..
T Consensus       540 liDGG-~gQ---l~aa~~~l~e~g~~~~~~v~~laK~~  573 (694)
T PRK14666        540 LVDGG-RGQ---LAAVVRALEEAGMGGLFAVASIAKAR  573 (694)
T ss_pred             EEcCC-HHH---HHHHHHHHHHcCCCCCccEEEEecCC
Confidence            99982 221   1111111011  24  8999999953

>PF02171 Piwi: Piwi domain; InterPro: IPR003165 This domain is found in the stem cell self-renewal protein Piwi and its relatives in Drosophila melanogaster []

Probab=87.83  E-value=23  Score=33.19  Aligned_cols=47  Identities=17%  Similarity=0.269  Sum_probs=33.2

Q ss_pred             CCCccEEEe---cCCCCCHHHHHHHHHHcCC--------CCCChHHHHHHHHHHHHHH
Q 046070          251 DTLKPIFIS---VGHCISLDTAVMIVKMTCK--------YRVPEPIRQADIRSRDYLQ  297 (309)
Q Consensus       251 ~~~kPIyVS---~Gh~isLetA~~iv~~~~~--------~RlPEPlR~Ad~~sr~~~r  297 (309)
                      +..+|+-++   .-.+++.++-.+++-.+|.        -|+|.|+..||.+|+...+
T Consensus       242 Gt~~P~~y~vl~~~~~~~~~~l~~~t~~L~~~~~~~~~~~~lP~p~~yA~~~a~~~~~  299 (302)
T PF02171_consen  242 GTARPTHYTVLYDDSNLSMDELQQLTYSLCHLYQNSTGPISLPAPLYYAHKLAKRGRN  299 (302)
T ss_dssp             SSEEEEEEEEEEESSCSCHHHHHHHHHHHTTGGTTSSS--SS-HHHHHHHHHHHHHHH
T ss_pred             ccccccEEEEecCcccccHHHHHHHHHHHHHHhcccCCCCccCHHHHHHHHHHHHHHh
Confidence            455666544   2236789999999876551        5799999999999997664

It has been found in the C-terminal of a number of proteins which also contain the PAZ domain (IPR003100 from INTERPRO) in their central region, for example the Argonaute proteins. Several of these proteins have been implicated in the development and maintenance of stem cells through the RNA-mediated gene-quelling mechanisms associated with the protein DICER. ; GO: 0005515 protein binding; PDB: 4F1N_B 3LUH_B 4EI1_A 3QX8_A 3LUC_C 3LUJ_B 3LUD_B 3QX9_A 3LUG_B 3LUK_B ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	309
3goc_A	237	Crystal Structure Of The Endonuclease V (Sav1684) F		2e-24
3ga2_A	246	Crystal Structure Of The Endonuclease_v (Bsu36170)		3e-22
2w35_A	225	Structures Of Endonuclease V With Dna Reveal Initia		7e-21
3hd0_A	237	Crystal Structure Of Tm1865, An Endonuclease V From		5e-20
2w36_A	225	Structures Of Endonuclease V With Dna Reveal Initia		5e-20

>pdb|3GOC|A Chain A, Crystal Structure Of The Endonuclease V (Sav1684) From Streptomyces Avermitilis. Northeast Structural Genomics Consortium Target Svr196 Length = 237

Iteration: 1
 Score =  109 bits (272), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 71/180 (39%), Positives = 98/180 (54%), Gaps = 18/180 (10%)
Query: 123 TLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVLMVDGNGLLHP 182
           TL +V E  ++  +  PYVPG LAFRE P +L+ LD +        P +++ DG G+ HP
Sbjct: 67  TLDVVAEATAVGEVSFPYVPGLLAFREIPTVLAALDALP-----CPPGLIVCDGYGVAHP 121
Query: 183 RGFGLASHIGVLANLTTIGVGKNLHHVDGLTHSGVRQLLDAKENNNEDIIPLMGGSGSTW 242
           R FGLASH+GVL  L TIGV KN       T S      +          PL+ G+    
Sbjct: 122 RRFGLASHLGVLTGLPTIGVAKNP-----FTFS-----YEDPGAPRGSAAPLLAGADEV- 170
Query: 243 GVAMRSTPDTLKPIFISVGHCISLDTAVM-IVKMTCKYRVPEPIRQADIRSRDYLQKHQS 301
           G A+R T   +KP+F+SVGH + LD A    + +T KYR+PE  R+AD   R  L++  +
Sbjct: 171 GRALR-TQSGVKPVFVSVGHRVDLDHACAHTLALTPKYRIPETTRRADSLCRRALKEATA 229

>pdb|3GA2|A Chain A, Crystal Structure Of The Endonuclease_v (Bsu36170) From Bacillus Subtilis, Northeast Structural Genomics Consortium Target Sr624 Length = 246

Iteration: 1
 Score =  102 bits (253), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 69/210 (32%), Positives = 109/210 (51%), Gaps = 22/210 (10%)
Query: 98  GGVDMSFSKED--PSIACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLS 155
            GVD+++ ++D  P   C CI+V+D  T +++ + +S  R+ VPYV GFLAFRE P+++ 
Sbjct: 43  AGVDLAYWEQDGEPYGVC-CIIVIDADTKEVIEKVHSXGRISVPYVSGFLAFRELPLIIE 101
Query: 156 LLDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLANLTTIGVGKNLHHVDGLTHS 215
               ++       P V + DGNG LH    G+A+H        TIG+ K    + G    
Sbjct: 102 AAKKLETE-----PDVFLFDGNGYLHYNHXGVATHAAFFLGKPTIGIAKTYLKIKGCDFV 156
Query: 216 GVRQLLDAKENNNEDIIPLMGGSGSTWGVAMRSTPDTLKPIFISVGHCISLDTAVMIVK- 274
                + A      DII      G  +G A+R+  D +KPIF+S G+ I LD++  I   
Sbjct: 157 TPEIEVGAY----TDIII----DGEVYGRALRTRRD-VKPIFLSCGNYIDLDSSYQITXS 207
Query: 275 -MTCKYRVPEPIRQADIRS---RDYLQKHQ 300
            +  + R+P P+R AD+ +   R + QK+ 
Sbjct: 208 LINQESRLPIPVRLADLETHVLRTFYQKNH 237

>pdb|2W35|A Chain A, Structures Of Endonuclease V With Dna Reveal Initiation Of Deaminated Adenine Repair Length = 225

Iteration: 1
 Score = 97.8 bits (242), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 64/207 (30%), Positives = 107/207 (51%), Gaps = 33/207 (15%)
Query: 95  KYIGGVDMSFSKEDPSIACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLL 154
           +Y+ GVD+SF  ++  +A   IVVL+  + +I+        +  PY+PG LAFRE P+ L
Sbjct: 37  EYVAGVDLSFPGKEEGLAV--IVVLEYPSFKILEVVSERGEITFPYIPGLLAFREGPLFL 94
Query: 155 SLLDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLANLTTIGVGKNLHHVDGLTH 214
              + ++ +     P V++ DG GL HPR  G+ASH+G+   + TIGV K+  +      
Sbjct: 95  KAWEKLRTK-----PDVVVFDGQGLAHPRKLGIASHMGLFIEIPTIGVAKSRLY------ 143
Query: 215 SGVRQLLDAKE------NNNEDIIPLMGGSGSTWGVAMRSTPDTLKPIFISVGHCISLDT 268
            G  ++ + K        + E+II          G  +R T +   PIF+S GH + +++
Sbjct: 144 -GTFKMPEDKRCSWSYLYDGEEII----------GCVIR-TKEGSAPIFVSPGHLMDVES 191
Query: 269 AVMIVKMTC--KYRVPEPIRQADIRSR 293
           +  ++K       R+PEP R A I ++
Sbjct: 192 SKRLIKAFTLPGRRIPEPTRLAHIYTQ 218

>pdb|3HD0|A Chain A, Crystal Structure Of Tm1865, An Endonuclease V From Thermotoga Maritima Length = 237

Iteration: 1
 Score = 94.7 bits (234), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 64/207 (30%), Positives = 104/207 (50%), Gaps = 33/207 (15%)
Query: 95  KYIGGVDMSFSKEDPSIACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLL 154
           +Y+ GVD+SF  ++  +A   IVVL+  + +I+        +  PY+PG LAFRE P+ L
Sbjct: 49  EYVAGVDLSFPGKEEGLAV--IVVLEYPSFKILEVVSERGEITFPYIPGLLAFREGPLFL 106
Query: 155 SLLDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLANLTTIGVGKNLHHVDGLTH 214
              + ++ +     P V++ DG GL HPR  G+ASH G+   + TIGV K+  +      
Sbjct: 107 KAWEKLRTK-----PDVVVFDGQGLAHPRKLGIASHXGLFIEIPTIGVAKSRLY------ 155
Query: 215 SGVRQLLDAKE------NNNEDIIPLMGGSGSTWGVAMRSTPDTLKPIFISVGHCISLDT 268
            G  +  + K        + E+II          G  +R T +   PIF+S GH   +++
Sbjct: 156 -GTFKXPEDKRCSWSYLYDGEEII----------GCVIR-TKEGSAPIFVSPGHLXDVES 203
Query: 269 AVMIVKMTC--KYRVPEPIRQADIRSR 293
           +  ++K       R+PEP R A I ++
Sbjct: 204 SKRLIKAFTLPGRRIPEPTRLAHIYTQ 230

>pdb|2W36|A Chain A, Structures Of Endonuclease V With Dna Reveal Initiation Of Deaminated Adenine Repair Length = 225

Iteration: 1
 Score = 94.7 bits (234), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 63/207 (30%), Positives = 106/207 (51%), Gaps = 33/207 (15%)
Query: 95  KYIGGVDMSFSKEDPSIACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLL 154
           +Y+ GV +SF  ++  +A   IVVL+  + +I+        +  PY+PG LAFRE P+ L
Sbjct: 37  EYVAGVALSFPGKEEGLAV--IVVLEYPSFKILEVVSERGEITFPYIPGLLAFREGPLFL 94
Query: 155 SLLDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLANLTTIGVGKNLHHVDGLTH 214
              + ++ +     P V++ DG GL HPR  G+ASH+G+   + TIGV K+  +      
Sbjct: 95  KAWEKLRTK-----PDVVVFDGQGLAHPRKLGIASHMGLFIEIPTIGVAKSRLY------ 143
Query: 215 SGVRQLLDAKE------NNNEDIIPLMGGSGSTWGVAMRSTPDTLKPIFISVGHCISLDT 268
            G  ++ + K        + E+II          G  +R T +   PIF+S GH + +++
Sbjct: 144 -GTFKMPEDKRCSWSYLYDGEEII----------GCVIR-TKEGSAPIFVSPGHLMDVES 191
Query: 269 AVMIVKMTC--KYRVPEPIRQADIRSR 293
           +  ++K       R+PEP R A I ++
Sbjct: 192 SKRLIKAFTLPGRRIPEPTRLAHIYTQ 218

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	309
3ga2_A	246	Endonuclease V; alpha-beta protein, structural gen	8e-71
3goc_A	237	Endonuclease V; alpha-beta protein, structural gen	2e-69
2w36_A	225	Endonuclease V; hypoxanthine, endonuclease, endonu	3e-66
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05

>3ga2_A Endonuclease V; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Bacillus subtilis} Length = 246

 Score =  218 bits (557), Expect = 8e-71
 Identities = 68/253 (26%), Positives = 115/253 (45%), Gaps = 37/253 (14%)

Query: 54  QWTEIQDELKKRLITEDFFTWNLPNSTTTNTSTKEEEEVLLKYIGGVDMSFSKED-PSIA 112
            + ++Q  LK R+        +                  +    GVD+++ ++D     
Sbjct: 16  DFLQVQFNLKNRINLSPTIHPDS-----------------INTTAGVDLAYWEQDGEPYG 58

Query: 113 CGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVL 172
             CI+V+D  T +++ + +S+ R+ VPYV GFLAFRE P+++     ++       P V 
Sbjct: 59  VCCIIVIDADTKEVIEKVHSMGRISVPYVSGFLAFRELPLIIEAAKKLETE-----PDVF 113

Query: 173 MVDGNGLLHPRGFGLASHIGVLANLTTIGVGKNLHHVDGLTHSGVRQLLDAKENNNEDII 232
           + DGNG LH    G+A+H        TIG+ K    + G             E       
Sbjct: 114 LFDGNGYLHYNHMGVATHAAFFLGKPTIGIAKTYLKIKGCDF-------VTPEIEVGAYT 166

Query: 233 PLMGGSGSTWGVAMRSTPDTLKPIFISVGHCISLDTAVMIVK--MTCKYRVPEPIRQADI 290
            ++   G  +G A+R+  D  KPIF+S G+ I LD++  I    +  + R+P P+R AD+
Sbjct: 167 DII-IDGEVYGRALRTRRDV-KPIFLSCGNYIDLDSSYQITMSLINQESRLPIPVRLADL 224

Query: 291 RS---RDYLQKHQ 300
            +   R + QK+ 
Sbjct: 225 ETHVLRTFYQKNH 237

>3goc_A Endonuclease V; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: YES; 1.60A {Streptomyces avermitilis} Length = 237

 Score =  214 bits (547), Expect = 2e-69
 Identities = 81/251 (32%), Positives = 119/251 (47%), Gaps = 36/251 (14%)

Query: 52  LNQWTEIQDELKKRLITEDFFTWNLPNSTTTNTSTKEEEEVLLKYIGGVDMSFSKEDPSI 111
             +   +QDEL+ R+I ++                          + GVD+++  ++  +
Sbjct: 14  EEEARAVQDELRGRVILDEPGPPPG-----------------TGRVTGVDVAY-DDERDV 55

Query: 112 ACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQV 171
                VVLD  TL +V E  ++  +  PYVPG LAFRE P +L+ LD +        P +
Sbjct: 56  VVAAAVVLDAATLDVVAEATAVGEVSFPYVPGLLAFREIPTVLAALDALPCP-----PGL 110

Query: 172 LMVDGNGLLHPRGFGLASHIGVLANLTTIGVGKNLHHVDGLTHSGVRQLLDAKENNNEDI 231
           ++ DG G+ HPR FGLASH+GVL  L TIGV KN                +         
Sbjct: 111 IVCDGYGVAHPRRFGLASHLGVLTGLPTIGVAKNPFTFSY----------EDPGAPRGSA 160

Query: 232 IPLMGGSGSTWGVAMRSTPDTLKPIFISVGHCISLDTAVMIV-KMTCKYRVPEPIRQADI 290
            PL+ G     G A+R+     KP+F+SVGH + LD A      +T KYR+PE  R+AD 
Sbjct: 161 APLLAG-ADEVGRALRTQSGV-KPVFVSVGHRVDLDHACAHTLALTPKYRIPETTRRADS 218

Query: 291 RSRDYLQKHQS 301
             R  L++  +
Sbjct: 219 LCRRALKEATA 229

>2w36_A Endonuclease V; hypoxanthine, endonuclease, endonucleasev, hydrolase, inosine, DNA damage, DNA repair; HET: BRU; 2.10A {Thermotoga maritima} PDB: 2w35_A 3hd0_A Length = 225

 Score =  206 bits (525), Expect = 3e-66
 Identities = 61/249 (24%), Positives = 109/249 (43%), Gaps = 40/249 (16%)

Query: 52  LNQWTEIQDELKKRLITEDFFTWNLPNSTTTNTSTKEEEEVLLKYIGGVDMSFSKEDPSI 111
             +  ++Q+EL+K++    +                       +Y+ GV +SF  ++   
Sbjct: 13  PEEAIKVQNELRKKIKLTPYEG-------------------EPEYVAGVALSFPGKEE-- 51

Query: 112 ACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQV 171
               IVVL+  + +I+        +  PY+PG LAFRE P+ L   + ++ +     P V
Sbjct: 52  GLAVIVVLEYPSFKILEVVSERGEITFPYIPGLLAFREGPLFLKAWEKLRTK-----PDV 106

Query: 172 LMVDGNGLLHPRGFGLASHIGVLANLTTIGVGKNLHHVDGLTHSGVRQLLDAKENNNEDI 231
           ++ DG GL HPR  G+ASH+G+   + TIGV K+  +         R             
Sbjct: 107 VVFDGQGLAHPRKLGIASHMGLFIEIPTIGVAKSRLYGTFKMPEDKR-----------CS 155

Query: 232 IPLMGGSGSTWGVAMRSTPDTLKPIFISVGHCISLDTAVMIVKMTC--KYRVPEPIRQAD 289
              +       G  +R+   +  PIF+S GH + ++++  ++K       R+PEP R A 
Sbjct: 156 WSYLYDGEEIIGCVIRTKEGS-APIFVSPGHLMDVESSKRLIKAFTLPGRRIPEPTRLAH 214

Query: 290 IRSRDYLQK 298
           I ++   + 
Sbjct: 215 IYTQRLKKG 223

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.1 bits (116), Expect = 1e-06
 Identities = 22/111 (19%), Positives = 37/111 (33%), Gaps = 24/111 (21%)

Query: 217 VRQLLDAKENNNEDIIPL--MGGSGSTWGVAM--RSTPDTLK---PIF-ISVGHCISLDT 268
           +RQ L   E      + +  + GSG TW       S     K    IF +++ +C S +T
Sbjct: 140 LRQAL--LELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPET 197

Query: 269 AVMIVKMTCK-------------YRVPEPIRQADIRSRDYLQKHQ-STCLL 305
            + +++                   +   I       R  L+      CLL
Sbjct: 198 VLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL 248

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.8 bits (105), Expect = 3e-05
 Identities = 58/442 (13%), Positives = 105/442 (23%), Gaps = 209/442 (47%)

Query: 12  RREFHSIPEQMSSCYRSYMENYCEEEREALASPDPAAQAQLNQWTEIQDELKKRLITEDF 71
                ++ E +         N+           D ++  +L     IQ EL+ RL     
Sbjct: 192 CNSPETVLEMLQKLLYQIDPNWTSR-------SDHSSNIKLRI-HSIQAELR-RL----L 238

Query: 72  FTWNLPNS------------------------TTTNTS---------------------- 85
            +    N                         TT                          
Sbjct: 239 KSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL 298

Query: 86  TKEE-EEVLLKYIGGVDMSFSKEDPSIACG------------------------------ 114
           T +E + +LLKY+           P                                   
Sbjct: 299 TPDEVKSLLLKYLD---CRPQDL-PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDK 354

Query: 115 -------CIVVLDLQTLQIVYEDYSLLRLQVPYVP--------GFLAFREAPVLL----- 154
                   + VL+    + +++  S+       +P          +   +  V++     
Sbjct: 355 LTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH-IPTILLSLIWFDVIKSDVMVVVNKLHK 413

Query: 155 -SLLDNMKKRANHFYPQVLM-----VDGNGLLH---------PRGFG------------L 187
            SL++   K +    P + +     ++    LH         P+ F              
Sbjct: 414 YSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYF 473

Query: 188 ASHIGVLANLTTIGVGKNLHHVDGLTHSG----VRQL------LDAKENNNEDIIPLMGG 237
            SHIG              HH+  + H       R +      L+ K      I      
Sbjct: 474 YSHIG--------------HHLKNIEHPERMTLFRMVFLDFRFLEQK------IR----H 509

Query: 238 SGSTWGVAMRSTPDTLKPIFISVGHCISLDTAVMIVKMTCKYR----VPEPIRQADIRS- 292
             + W  A  S  +TL            L            Y+      +P  +  + + 
Sbjct: 510 DSTAWN-ASGSILNTL----------QQLK----------FYKPYICDNDPKYERLVNAI 548

Query: 293 RDYLQKHQS-------TCLLQR 307
            D+L K +        T LL+ 
Sbjct: 549 LDFLPKIEENLICSKYTDLLRI 570

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	309
3ga2_A	246	Endonuclease V; alpha-beta protein, structural gen	100.0
3goc_A	237	Endonuclease V; alpha-beta protein, structural gen	100.0
2w36_A	225	Endonuclease V; hypoxanthine, endonuclease, endonu	100.0
2qh9_A	184	UPF0215 protein AF_1433; structural genomics, PSI-	100.0
3c65_A	226	Uvrabc system protein C; UVRC, endonuclease, nucle	97.24
2nrr_A	159	Uvrabc system protein C; UVRC, endonuclase, NER, h	97.16
2nrt_A	220	Uvrabc system protein C; UVRC, endonuclease, RNAse	97.06

>3ga2_A Endonuclease V; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Bacillus subtilis}

Probab=100.00  E-value=6.1e-74  Score=529.06  Aligned_cols=224  Identities=29%  Similarity=0.507  Sum_probs=200.9

Q ss_pred             HHHHHHHHHHHHhhccccccccCCCCCCCCCCCCCchhhcccccEEEEEeeeeecCC-CCeEEEEEEEEeCCCceEEEEE
Q 046070           52 LNQWTEIQDELKKRLITEDFFTWNLPNSTTTNTSTKEEEEVLLKYIGGVDMSFSKED-PSIACGCIVVLDLQTLQIVYED  130 (309)
Q Consensus        52 ~~~~~~~Q~~L~~~vi~~d~~~~~~~~~~~~~~~~~~~~~~~~~~VaGvDvSf~~~~-~~~a~Aa~VVl~~~~l~vv~~~  130 (309)
                      .++|+++|++|+++|+++|.+++                 .++++|||||+||.+++ ...++||+||++|+++++|++.
T Consensus        14 ~~~~~~~Q~~L~~~v~~~~~~~~-----------------~~~~~VaGvDvsy~~~~~~~~~~aa~Vvl~~~~l~vv~~~   76 (246)
T 3ga2_A           14 EQDFLQVQFNLKNRINLSPTIHP-----------------DSINTTAGVDLAYWEQDGEPYGVCCIIVIDADTKEVIEKV   76 (246)
T ss_dssp             HHHHHHHHHHHHTTCCCCCCCCG-----------------GGCSEEEEEEEEEEEETTEEEEEEEEEEEETTTCCEEEEE
T ss_pred             HHHHHHHHHHHHHhheecCCCCC-----------------CCceEEEEEEeeeecCCCCeEEEEEEEEEECCCCcEEEEE
Confidence            68999999999999999886421                 36899999999998643 3568899999999999999999


Q ss_pred             EEEEeeccCCCCccccccchHHHHHHHHHHHhhcCCCCCcEEEEecccccCCCCCCchhhHhhhcCCeeEEEeCCccccC
Q 046070          131 YSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLANLTTIGVGKNLHHVD  210 (309)
Q Consensus       131 ~~~~~~~~PYIPG~LAFRE~P~il~al~kL~~~~p~~~PdvilVDG~Gi~HPR~~GlAsHlGv~l~iPtIGVAKs~L~~d  210 (309)
                      ++.++++||||||||||||+|+|++||++|+.+     ||+||||||||+|||+||||||+|+++|+||||||||+|+++
T Consensus        77 ~~~~~~~~PYIPG~LaFRE~P~ll~al~~L~~~-----PdlllvDG~GiaHPRr~GlAsHlGv~l~~PtIGVAKs~L~~~  151 (246)
T 3ga2_A           77 HSMGRISVPYVSGFLAFRELPLIIEAAKKLETE-----PDVFLFDGNGYLHYNHMGVATHAAFFLGKPTIGIAKTYLKIK  151 (246)
T ss_dssp             EEEEECCCCSSSSCGGGGTHHHHHHHHHHCSSC-----CSCEEEEBCSSSSTTSCCHHHHHHHHHTSCEEEEESSCCCCT
T ss_pred             EEEcccCCCCCCCchhhhhHHHHHHHHHhcCCC-----CCEEEEcCcEEecCCCcchhheeeeecCCCEEeeeccccccC
Confidence            999999999999999999999999999999864     999999999999999999999999999999999999999987


Q ss_pred             CccccccccccccccCCCCCeeeccCCCCcEEEEEEeecCCCCccEEEecCCCCCHHHHHHHHHHcC--CCCCChHHHHH
Q 046070          211 GLTHSGVRQLLDAKENNNEDIIPLMGGSGSTWGVAMRSTPDTLKPIFISVGHCISLDTAVMIVKMTC--KYRVPEPIRQA  288 (309)
Q Consensus       211 G~~~~~~~~~~~~~~~~~g~~~~l~~~~ge~vG~alrt~~~~~kPIyVS~Gh~isLetA~~iv~~~~--~~RlPEPlR~A  288 (309)
                      |.       .+.+++.++|++.+|++ +|+++|+++||++ ++||||||+||+|||++|+++|++|+  +||+|||||+|
T Consensus       152 g~-------~~~~~~~~~g~~~~l~~-~ge~vG~vlRt~~-~~kPlyVS~Gh~i~l~~A~~~v~~~~~~~yRlPEP~R~A  222 (246)
T 3ga2_A          152 GC-------DFVTPEIEVGAYTDIII-DGEVYGRALRTRR-DVKPIFLSCGNYIDLDSSYQITMSLINQESRLPIPVRLA  222 (246)
T ss_dssp             TC-------CCCCCCSSTTCEEEEEE-TTEEEEEEECSST-TSCCEEEEEEESSCHHHHHHHHHHTCCTTCSSCHHHHHH
T ss_pred             Cc-------cccCccccCCceeeecc-CCEEEEEEEEeCC-CCCCEEEeccCCCCHHHHHHHHHHHccCCCCCChHHHHH
Confidence            64       34567778899999874 6999999999875 78999999999999999999999998  49999999999


Q ss_pred             HHHHHHHHHhhcchhhhh
Q 046070          289 DIRSRDYLQKHQSTCLLQ  306 (309)
Q Consensus       289 d~~sr~~~r~~~~~~~~~  306 (309)
                      |++|+++++.....+.|.
T Consensus       223 D~~a~~~r~~l~~~~~~~  240 (246)
T 3ga2_A          223 DLETHVLRTFYQKNHVLE  240 (246)
T ss_dssp             HHHHHHHHHHHHHTC---
T ss_pred             HHHHHHHHHHHHHHhhHh
Confidence            999999988877776654

>3goc_A Endonuclease V; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: YES; 1.60A {Streptomyces avermitilis}

Probab=100.00  E-value=6.9e-73  Score=519.61  Aligned_cols=214  Identities=37%  Similarity=0.602  Sum_probs=195.3

Q ss_pred             HHHHHHHHHHHHHhhccccccccCCCCCCCCCCCCCchhhcccccEEEEEeeeeecCCCCeEEEEEEEEeCCCceEEEEE
Q 046070           51 QLNQWTEIQDELKKRLITEDFFTWNLPNSTTTNTSTKEEEEVLLKYIGGVDMSFSKEDPSIACGCIVVLDLQTLQIVYED  130 (309)
Q Consensus        51 ~~~~~~~~Q~~L~~~vi~~d~~~~~~~~~~~~~~~~~~~~~~~~~~VaGvDvSf~~~~~~~a~Aa~VVl~~~~l~vv~~~  130 (309)
                      ..++|+++|++|+++|+++|...                 ..++++|||||+||.++ ++.++||+||++|++++++++.
T Consensus        13 ~~~~a~~~Q~~L~~~v~~~~~~~-----------------~~~~~~VaGvDvsy~~~-~~~~~Aa~Vvl~~~~l~~v~~~   74 (237)
T 3goc_A           13 TEEEARAVQDELRGRVILDEPGP-----------------PPGTGRVTGVDVAYDDE-RDVVVAAAVVLDAATLDVVAEA   74 (237)
T ss_dssp             SHHHHHHHHHHHGGGCCCSCCCC-----------------CTTSSEEEEEEEEECSS-SSEEEEEEEEEETTTCCEEEEE
T ss_pred             CHHHHHHHHHHHHhheeccCCCC-----------------CCCceEEEEEEEEeecC-CceEEEEEEEEECCCCcEEEEE
Confidence            36899999999999999987521                 03589999999999765 4578999999999999999999


Q ss_pred             EEEEeeccCCCCccccccchHHHHHHHHHHHhhcCCCCCcEEEEecccccCCCCCCchhhHhhhcCCeeEEEeCCccccC
Q 046070          131 YSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLANLTTIGVGKNLHHVD  210 (309)
Q Consensus       131 ~~~~~~~~PYIPG~LAFRE~P~il~al~kL~~~~p~~~PdvilVDG~Gi~HPR~~GlAsHlGv~l~iPtIGVAKs~L~~d  210 (309)
                      ++.++++||||||||||||+|++++||++|+.+     ||+||||||||+|||+||||||+|+++|+||||||||+|++ 
T Consensus        75 ~~~~~~~~PYIPG~LaFRE~P~ll~al~~L~~~-----PdlllvDG~GiaHPRr~GlAsHlGv~l~~PtIGVAKs~L~g-  148 (237)
T 3goc_A           75 TAVGEVSFPYVPGLLAFREIPTVLAALDALPCP-----PGLIVCDGYGVAHPRRFGLASHLGVLTGLPTIGVAKNPFTF-  148 (237)
T ss_dssp             EEEEECCSCCCTTCGGGGTHHHHHHHHHTSSSC-----CSEEEEESCSSCSTTSCCHHHHHHHHHCSCEEEEESSCTTC-
T ss_pred             EEeccccCCCCcchhhhhhHHHHHHHHHhcCCC-----CCEEEEeCceeecCCCcchhheeeeecCCCEEeeecccccc-
Confidence            999999999999999999999999999999864     99999999999999999999999999999999999999993 


Q ss_pred             CccccccccccccccCCCCCeeeccCCCCcEEEEEEeecCCCCccEEEecCCCCCHHHHHHHHHHcC-CCCCChHHHHHH
Q 046070          211 GLTHSGVRQLLDAKENNNEDIIPLMGGSGSTWGVAMRSTPDTLKPIFISVGHCISLDTAVMIVKMTC-KYRVPEPIRQAD  289 (309)
Q Consensus       211 G~~~~~~~~~~~~~~~~~g~~~~l~~~~ge~vG~alrt~~~~~kPIyVS~Gh~isLetA~~iv~~~~-~~RlPEPlR~Ad  289 (309)
                               .+.++++++|++.+|+ .+|+++|+++||++ ++||||||+||+|||++|+++|++|+ +||+|||||+||
T Consensus       149 ---------~~~~~~~~~G~~~~l~-~~ge~vG~~lRt~~-~~kPlyVS~Ghrisl~~A~~~v~~~~~~yRlPEP~R~AD  217 (237)
T 3goc_A          149 ---------SYEDPGAPRGSAAPLL-AGADEVGRALRTQS-GVKPVFVSVGHRVDLDHACAHTLALTPKYRIPETTRRAD  217 (237)
T ss_dssp             ---------EECCCCSSTTCEEEEE-ETTEEEEEEECCST-TSCCEEEEEEESCCHHHHHHHHHHTCSSCSSCHHHHHHH
T ss_pred             ---------ccccccccCCceeEEc-cCCEEEEEEEEccC-CccCEEEecCCCcCHHHHHHHHHHHccCCCCCHHHHHHH
Confidence                     3456678899999998 46999999999874 68999999999999999999999998 899999999999


Q ss_pred             HHHHHHHHhh
Q 046070          290 IRSRDYLQKH  299 (309)
Q Consensus       290 ~~sr~~~r~~  299 (309)
                      ++||+.++..
T Consensus       218 ~lsr~~l~~~  227 (237)
T 3goc_A          218 SLCRRALKEA  227 (237)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhh
Confidence            9999998754

>2w36_A Endonuclease V; hypoxanthine, endonuclease, endonucleasev, hydrolase, inosine, DNA damage, DNA repair; HET: BRU; 2.10A {Thermotoga maritima} PDB: 2w35_A 3hd0_A

Probab=100.00  E-value=7.3e-72  Score=510.43  Aligned_cols=218  Identities=28%  Similarity=0.488  Sum_probs=193.9

Q ss_pred             HHHHHHHHHHHhhccccccccCCCCCCCCCCCCCchhhcccccEEEEEeeeeecCCCCeEEEEEEEEeCCCceEEEEEEE
Q 046070           53 NQWTEIQDELKKRLITEDFFTWNLPNSTTTNTSTKEEEEVLLKYIGGVDMSFSKEDPSIACGCIVVLDLQTLQIVYEDYS  132 (309)
Q Consensus        53 ~~~~~~Q~~L~~~vi~~d~~~~~~~~~~~~~~~~~~~~~~~~~~VaGvDvSf~~~~~~~a~Aa~VVl~~~~l~vv~~~~~  132 (309)
                      ++|+++|++|+++++++|+++|.+....         ...++++|||||+||.+  ++.++||+||++|++++++++.++
T Consensus         4 ~~~~~~Q~~L~~~v~~~~~~~~~~~~~~---------~~~~~~~VaGvDvsy~~--~~~a~aa~Vvl~~~~~~~v~~~~~   72 (225)
T 2w36_A            4 RQLHRWDLPPEEAIKVQNELRKKIKLTP---------YEGEPEYVAGVALSFPG--KEEGLAVIVVLEYPSFKILEVVSE   72 (225)
T ss_dssp             CCCSCSCCCHHHHHHHHHHHGGGCCCCC---------CCSCCSEEEEEEEEEEE--TTEEEEEEEEEETTTTEEEEEEEE
T ss_pred             HHHHHHHHHHHhheeecccccccccccc---------ccCCccEEEEEEeeeeC--CCcEEEEEEEEECCCCcEEEEEEE
Confidence            4688999999999999987755432110         01468999999999986  358999999999999999999999


Q ss_pred             EEeeccCCCCccccccchHHHHHHHHHHHhhcCCCCCcEEEEecccccCCCCCCchhhHhhhcCCeeEEEeCCccccCCc
Q 046070          133 LLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLANLTTIGVGKNLHHVDGL  212 (309)
Q Consensus       133 ~~~~~~PYIPG~LAFRE~P~il~al~kL~~~~p~~~PdvilVDG~Gi~HPR~~GlAsHlGv~l~iPtIGVAKs~L~~dG~  212 (309)
                      .++++||||||||||||+|+++++|++|+.+     ||+|||||||++|||+||||||+|+++|+||||||||+|+  | 
T Consensus        73 ~~~~~~PYIPG~LaFRE~P~~l~al~~L~~~-----PdlllvDG~Gi~HpR~~GlA~HlGv~l~~PtIGVAK~~l~--G-  144 (225)
T 2w36_A           73 RGEITFPYIPGLLAFREGPLFLKAWEKLRTK-----PDVVVFDGQGLAHPRKLGIASHMGLFIEIPTIGVAKSRLY--G-  144 (225)
T ss_dssp             EEECCSCCCTTCTHHHHHHHHHHHHTTCCSC-----CSEEEEESCSSSSTTSCCHHHHHHHHHTSCEEEEESSCSS--C-
T ss_pred             EecccCCcccchHHHhhhHHHHHHHHhcCCC-----CCEEEEeCeEEEcCCCCCchhhhhhhhCCCEEEEEecccC--C-
Confidence            9999999999999999999999999999874     9999999999999999999999999999999999999998  4 


Q ss_pred             cccccccccccccCCCCCeeeccCCCCcEEEEEEeecCCCCccEEEecCCCCCHHHHHHHHHHcC--CCCCChHHHHHHH
Q 046070          213 THSGVRQLLDAKENNNEDIIPLMGGSGSTWGVAMRSTPDTLKPIFISVGHCISLDTAVMIVKMTC--KYRVPEPIRQADI  290 (309)
Q Consensus       213 ~~~~~~~~~~~~~~~~g~~~~l~~~~ge~vG~alrt~~~~~kPIyVS~Gh~isLetA~~iv~~~~--~~RlPEPlR~Ad~  290 (309)
                             .+.+++.++|++.+++ .+|+++|+++||+. ++||||||+||+||+++|+++|++|+  +||+|||||+||+
T Consensus       145 -------~~~~~~~~~g~~~~l~-~~ge~iG~~lRt~~-~~kPlyVS~Gh~i~l~~A~~~v~~~~~~~yRlPEP~R~Ad~  215 (225)
T 2w36_A          145 -------TFKMPEDKRCSWSYLY-DGEEIIGCVIRTKE-GSAPIFVSPGHLMDVESSKRLIKAFTLPGRRIPEPTRLAHI  215 (225)
T ss_dssp             -------BCCCCCSSSSCEEEEE-ETTEEEEEEECCST-TSCCEEEEECSSCCHHHHHHHHHHHCCTTCSSCHHHHHHHH
T ss_pred             -------CcccccccCCceeEec-cCCEEEEEEEEcCC-CccCEEEeCCCCcCHHHHHHHHHHHhcCCCCCCHHHHHHHH
Confidence                   2345667889999998 46999999999874 57999999999999999999999998  7999999999999


Q ss_pred             HHHHHHHh
Q 046070          291 RSRDYLQK  298 (309)
Q Consensus       291 ~sr~~~r~  298 (309)
                      +||++.++
T Consensus       216 ~s~~~~~~  223 (225)
T 2w36_A          216 YTQRLKKG  223 (225)
T ss_dssp             HHHHHTTC
T ss_pred             HHHHhhhh
Confidence            99987554

>2qh9_A UPF0215 protein AF_1433; structural genomics, PSI-2, MCSG, PR structure initiative; 1.80A {Archaeoglobus fulgidus}

Probab=100.00  E-value=1.1e-34  Score=257.76  Aligned_cols=167  Identities=17%  Similarity=0.198  Sum_probs=127.2

Q ss_pred             EEEEEeeeeecCCCCeEEEEEEEEeCCCceEEEEEEEEEeeccCCCCccccccchHHHHHHHHHHHhhcCCCCCcEEEEe
Q 046070           96 YIGGVDMSFSKEDPSIACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVLMVD  175 (309)
Q Consensus        96 ~VaGvDvSf~~~~~~~a~Aa~VVl~~~~l~vv~~~~~~~~~~~PYIPG~LAFRE~P~il~al~kL~~~~p~~~PdvilVD  175 (309)
                      +|+|+|.||.+  +..++|+ |||+  ++.+++..+.  .++   |||++|||   .+++++++|+.+ |  .||+||+|
T Consensus         8 rv~GiDds~~~--~~~~l~g-vv~~--~~~v~g~~~~--~~~---vdG~dat~---~i~~~~~~l~~~-p--~~~vvllD   71 (184)
T 2qh9_A            8 RFLGIDDSFDD--RKCCVVG-CVTC--GGYVEGFLYT--EID---IDGLDATD---KLISMVRRSKFR-E--QIKCIFLP   71 (184)
T ss_dssp             EEEEEEEEECS--SCEEEEE-EEEE--TTEEEEEEEE--EEC---TTCSCHHH---HHHHHHTTCTTT-T--TEEEEEES
T ss_pred             EEEEEEcccCC--CceEEEE-EEEE--CCEEEEEEEE--EEE---ECChhHHH---HHHHHHHhcCCC-C--CCcEEEEC
Confidence            79999999973  4567766 4888  6677655444  444   79999975   899999999864 1  14999999


Q ss_pred             cccccCCCCCCchhhHhhhcCCeeEEEeCCccccCCccccccccccccccCCCCCeeeccCCCCcEEEEEEe---ecCCC
Q 046070          176 GNGLLHPRGFGLASHIGVLANLTTIGVGKNLHHVDGLTHSGVRQLLDAKENNNEDIIPLMGGSGSTWGVAMR---STPDT  252 (309)
Q Consensus       176 G~Gi~HPR~~GlAsHlGv~l~iPtIGVAKs~L~~dG~~~~~~~~~~~~~~~~~g~~~~l~~~~ge~vG~alr---t~~~~  252 (309)
                      |+|++|||.+|+ +|+|+.+|+|||||||+....++++ +.++ +|..               ++..+.+++   ++ ..
T Consensus        72 G~g~agfn~~di-~~l~~~~~~P~I~V~~~~p~~~~~~-~al~-~~~~---------------~e~~~~~l~~~~~~-~~  132 (184)
T 2qh9_A           72 GITLGGFNLVDI-QRVYRETKIPVVVVMRRKPDMEEFD-SAMR-NLEN---------------YELRRKIVEVAGEI-HR  132 (184)
T ss_dssp             SSEETTTEECCH-HHHHHHHCCCEEEEESSCCCHHHHH-HHHT-TSTT---------------HHHHHHHHHHTCCC-EE
T ss_pred             CEeeccCCEeCH-HHHHHhhCCCEEEEEEeCCCchhhh-hhhh-ccCC---------------CeEEEEEEEeCCCc-cC
Confidence            999999999999 7899999999999999987543332 2222 2221               222233344   22 34


Q ss_pred             CccEEE-ecCCCCCHHHHHHHHHHcC-CCCCChHHHHHHHHHHHHHHhh
Q 046070          253 LKPIFI-SVGHCISLDTAVMIVKMTC-KYRVPEPIRQADIRSRDYLQKH  299 (309)
Q Consensus       253 ~kPIyV-S~Gh~isLetA~~iv~~~~-~~RlPEPlR~Ad~~sr~~~r~~  299 (309)
                      .+|||| |+|  ||+++|.+++++|+ +||+|||||+||++|+.+.+..
T Consensus       133 v~pvyV~s~G--i~l~~A~~iv~~~~~~~riPEPlR~Ahlia~~~~~~~  179 (184)
T 2qh9_A          133 IGDIYIQTAG--LTPSEAEKLVKASLIKGNMPEPVRISHLVASAIIHGE  179 (184)
T ss_dssp             ETTEEEEEES--SCHHHHHHHHHHHCSSSSSCHHHHHHHHHHHHHHCC-
T ss_pred             ceeEEEEECC--CCHHHHHHHHHHhcccCCCchhHHHHHHHHHhhhccc
Confidence            789999 655  99999999999998 7999999999999999976643

>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}

Probab=97.24  E-value=0.00023  Score=64.96  Aligned_cols=99  Identities=18%  Similarity=0.266  Sum_probs=54.2

Q ss_pred             ccEEEEEeeeeecCCCCeEEEEEEEEeCCC-ceEEEEEEEEEeeccCCCCccccccchHHHHHHHHHHHhhcCCCCCcEE
Q 046070           94 LKYIGGVDMSFSKEDPSIACGCIVVLDLQT-LQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVL  172 (309)
Q Consensus        94 ~~~VaGvDvSf~~~~~~~a~Aa~VVl~~~~-l~vv~~~~~~~~~~~PYIPG~LAFRE~P~il~al~kL~~~~p~~~Pdvi  172 (309)
                      +.+|=++|+|-..+.  .+||++||+.-.. .+--|..|.+..++-|  --|-++||+  +.+-+.++..+.. ..||+|
T Consensus        14 p~rIE~fDiSh~~G~--~~V~smVvf~~g~p~k~~YR~f~i~~~~g~--DDya~m~Ev--l~RR~~r~~~e~~-~~PDLi   86 (226)
T 3c65_A           14 PRRIEAFDNSNIYGA--DPVSALVVFLDGKPAKKEYRKYKVKTVAGP--NDYETMREV--VRRRYTRVLKEGL-PLPDLI   86 (226)
T ss_dssp             CSEEEEEEEEESSSS--SCEEEEEEEETTEECGGGCEEEECCCCCTT--CHHHHHHHH--HHHHHHHHHHHTC-CCCSEE
T ss_pred             CCEEEEEECCccCCc--CceEEEEEEeCCccChhhCceeecCCCCCC--cHHHHHHHH--HHHHHhhhhcccC-CCCCEE
Confidence            578999999997653  4788999996531 1112333333322211  246677764  3445555443311 159999


Q ss_pred             EEecccccCCCCCCchh-----hHhhhcCCeeEEEeCC
Q 046070          173 MVDGNGLLHPRGFGLAS-----HIGVLANLTTIGVGKN  205 (309)
Q Consensus       173 lVDG~Gi~HPR~~GlAs-----HlGv~l~iPtIGVAKs  205 (309)
                      |||| |..   .+..|.     -+|  +++|+||+||.
T Consensus        87 liDG-Gkg---Ql~~a~~vl~~~lg--~~i~v~glaK~  118 (226)
T 3c65_A           87 IIDG-GKG---HLSAVRDVLENELG--LDVPLAGLAKD  118 (226)
T ss_dssp             EESS-CHH---HHHHHHHHHHHTSC--CCCCEEEC---
T ss_pred             EEeC-CHH---HHHHHHHHHHHhcC--CCceEEEEEcC
Confidence            9998 221   112221     223  26999999995

>2nrr_A Uvrabc system protein C; UVRC, endonuclase, NER, hydrolase; 1.20A {Thermotoga maritima}

Probab=97.16  E-value=0.00031  Score=61.04  Aligned_cols=93  Identities=22%  Similarity=0.334  Sum_probs=47.4

Q ss_pred             ccEEEEEeeeeecCCCCeEEEEEEEEeCCCceEEEEEEEEEeeccCCCCccccccchHHHHHHHHHHHhhcCCCCCcEEE
Q 046070           94 LKYIGGVDMSFSKEDPSIACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVLM  173 (309)
Q Consensus        94 ~~~VaGvDvSf~~~~~~~a~Aa~VVl~~~~l~vv~~~~~~~~~~~PYIPG~LAFRE~P~il~al~kL~~~~p~~~Pdvil  173 (309)
                      +++|=++|+|-..+.  .++|++||+.-.  ++....|-.-++.-.-.--|-++||+  +.+-+.++  +    .||+||
T Consensus        17 P~RIE~fDiSh~~G~--~~VasmVVf~~g--~p~K~~YRrf~I~~~g~DDya~M~Ev--l~RR~~r~--~----~PDLil   84 (159)
T 2nrr_A           17 PYRIEGIDISHLQGK--YTVASLVVFEDG--FPKKGDYRRYKIEQDHPDDYESIRTV--VKRRYSKH--P----LPNLLF   84 (159)
T ss_dssp             CCEEEEEEEECC-----CCEEEEEEEETT--EECGGGCEEEEC-----CHHHHHHHH--HHHHHTTS--C----CCSEEE
T ss_pred             CCEEEEEECCccCCc--cceEEEEEEeCC--ccChhhCceeecCCCCCCHHHHHHHH--HHHHhccC--C----CCCEEE
Confidence            578999999987653  478899999653  22222222223322001234444442  22222222  1    599999


Q ss_pred             Eec-ccccCCCCCCchh----hHhhhcCCeeEEEeCC
Q 046070          174 VDG-NGLLHPRGFGLAS----HIGVLANLTTIGVGKN  205 (309)
Q Consensus       174 VDG-~Gi~HPR~~GlAs----HlGv~l~iPtIGVAKs  205 (309)
                      ||| -|-+     +.|.    -+|  +++|.||+||.
T Consensus        85 IDGGkgQl-----~aA~~vl~elg--~~i~v~glAK~  114 (159)
T 2nrr_A           85 VDGGIGQV-----NAAIEALKEIG--KDCPVVGLAKK  114 (159)
T ss_dssp             ESSCHHHH-----HHHHHHHHHTT--CCCCEEEEC--
T ss_pred             EeCCHHHH-----HHHHHHHHHcC--CCccEEEEEcC
Confidence            998 2222     2221    223  26999999996

>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A

Probab=97.06  E-value=0.00077  Score=61.28  Aligned_cols=92  Identities=22%  Similarity=0.346  Sum_probs=52.5

Q ss_pred             ccEEEEEeeeeecCCCCeEEEEEEEEeCCC-ceEEEEEEEEEeeccCCCCccccccchHHHHHHHHHHHhhcCCCCCcEE
Q 046070           94 LKYIGGVDMSFSKEDPSIACGCIVVLDLQT-LQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVL  172 (309)
Q Consensus        94 ~~~VaGvDvSf~~~~~~~a~Aa~VVl~~~~-l~vv~~~~~~~~~~~PYIPG~LAFRE~P~il~al~kL~~~~p~~~Pdvi  172 (309)
                      +.+|=++|+|-..+  ..+||++||++-.. .+--|..|.+.. +-  .--|-++||+  +.+-+.++  +    .||+|
T Consensus        22 p~rIE~fDiSh~~G--~~~V~smVvf~~g~p~k~~YRrf~i~~-~g--~DDya~m~Ev--l~RR~~r~--~----~PDLi   88 (220)
T 2nrt_A           22 PYRIEGIDISHLQG--KYTVASLVVFEDGFPKKGDYRRYKIEQ-DH--PDDYESIRTV--VKRRYSKH--P----LPNLL   88 (220)
T ss_dssp             CCEEEEEEEEEETT--TEEEEEEEEEETTEECGGGCEEEEEEC-SS--CCHHHHHHHH--HHHHHTTS--C----CCSEE
T ss_pred             CCEEEEEECCccCC--ccceEEEEEEeCCccChhhCceeeCCC-CC--CCHHHHHHHH--HHHHhccC--C----CCCEE
Confidence            57899999999865  46889999996531 111233333322 11  1235555543  22222222  1    59999


Q ss_pred             EEec-ccccCCCCCCchh----hHhhhcCCeeEEEeCC
Q 046070          173 MVDG-NGLLHPRGFGLAS----HIGVLANLTTIGVGKN  205 (309)
Q Consensus       173 lVDG-~Gi~HPR~~GlAs----HlGv~l~iPtIGVAKs  205 (309)
                      |||| -|-+     ..|.    -+|  +++|+||+||.
T Consensus        89 liDGGkgQl-----~~a~~vl~~lg--~~i~v~glaK~  119 (220)
T 2nrt_A           89 FVDGGIGQV-----NAAIEALKEIG--KDCPVVGLAKK  119 (220)
T ss_dssp             EESSSHHHH-----HHHHHHHHHTT--CCCCEEEECTT
T ss_pred             EEeCCHHHH-----HHHHHHHHHcC--CCCeEEEEECC
Confidence            9998 2222     2222    223  36999999995

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00