Citrus Sinensis ID: 046127
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 345 | 2.2.26 [Sep-21-2011] | |||||||
| Q8Z068 | 530 | Methionine--tRNA ligase O | yes | no | 0.736 | 0.479 | 0.560 | 3e-84 | |
| P59081 | 529 | Methionine--tRNA ligase O | yes | no | 0.736 | 0.480 | 0.588 | 1e-80 | |
| Q55729 | 532 | Methionine--tRNA ligase O | N/A | no | 0.736 | 0.477 | 0.529 | 6e-79 | |
| O67298 | 497 | Methionine--tRNA ligase O | yes | no | 0.710 | 0.492 | 0.523 | 1e-70 | |
| O33925 | 629 | Methionine--tRNA ligase O | yes | no | 0.724 | 0.397 | 0.466 | 2e-66 | |
| Q9F2I9 | 538 | Methionine--tRNA ligase O | yes | no | 0.710 | 0.455 | 0.484 | 2e-65 | |
| P23395 | 618 | Methionine--tRNA ligase O | yes | no | 0.672 | 0.375 | 0.510 | 4e-65 | |
| Q899D9 | 641 | Methionine--tRNA ligase O | yes | no | 0.724 | 0.390 | 0.474 | 2e-63 | |
| Q8XHG1 | 645 | Methionine--tRNA ligase O | yes | no | 0.727 | 0.389 | 0.468 | 1e-62 | |
| Q1RJZ5 | 509 | Methionine--tRNA ligase O | yes | no | 0.727 | 0.493 | 0.468 | 3e-62 |
| >sp|Q8Z068|SYM_NOSS1 Methionine--tRNA ligase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=metG PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 312 bits (799), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 143/255 (56%), Positives = 186/255 (72%), Gaps = 1/255 (0%)
Query: 91 FVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGG 150
F LTTPLYYVN PH+GSAYTT+AADA+ARFQ+LLG+ V+ ITGTDEHG+KI +A G
Sbjct: 11 FALTTPLYYVNDVPHIGSAYTTMAADAVARFQKLLGRDVLLITGTDEHGQKIQRSAESLG 70
Query: 151 SSPSEHCDVVSQAYKTLWKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEG 210
+P E CD + ++ +LW+ L+I YD+F RTT +H+AIV EF++ V GDIY+ +G
Sbjct: 71 KAPQEFCDEIVPSFMSLWRLLNIQYDRFSRTTAVRHKAIVDEFFARVWEAGDIYQGQQKG 130
Query: 211 LYCVNCEEYKDEKELLENQCCPIHLKPCVA-RKEDNYFFALSKYQKLLEDTLTENPDFVQ 269
YCV+CEE+K+E+ELLE CPIH+ V R E NYFF LSKYQ LE+ +PDF+Q
Sbjct: 131 WYCVSCEEFKEERELLEGNRCPIHVNKEVEWRDEQNYFFRLSKYQTQLEEFYQSHPDFIQ 190
Query: 270 PSFRLNEVQGWIKSGLRDFSISRASVDWGIPVPNDNKQTIYVWFDALLGYISALSEDRDQ 329
P R NEV ++ GL+DFSISR ++DWG PVPND K T+YVWFDALL Y++AL + D+
Sbjct: 191 PESRRNEVLNFVSQGLQDFSISRVNLDWGFPVPNDPKHTLYVWFDALLAYVTALLDPEDE 250
Query: 330 PSLRTAVSSGWPASL 344
P+L A+ WP +L
Sbjct: 251 PTLENALGKWWPINL 265
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Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) EC: 6EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 0 |
| >sp|P59081|SYM_THEEB Methionine--tRNA ligase OS=Thermosynechococcus elongatus (strain BP-1) GN=metG PE=3 SV=1 | Back alignment and function description |
|---|
Score = 300 bits (767), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 150/255 (58%), Positives = 185/255 (72%), Gaps = 1/255 (0%)
Query: 91 FVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGG 150
F LTTPLYYVNA PH+GSAYTTIAAD +ARF RL G +V FITGTDEHG+KI A G
Sbjct: 5 FSLTTPLYYVNALPHIGSAYTTIAADVLARFYRLQGYQVRFITGTDEHGQKIERTAQQRG 64
Query: 151 SSPSEHCDVVSQAYKTLWKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEG 210
SP HCD ++ ++ LW+ L+I YD+F RTT P+H AIV EF+ V NGDIY +G
Sbjct: 65 LSPQAHCDEIAAGFQALWQQLNIHYDRFSRTTSPRHHAIVNEFFQRVWDNGDIYLGQQQG 124
Query: 211 LYCVNCEEYKDEKELLENQCCPIHLKPCVA-RKEDNYFFALSKYQKLLEDTLTENPDFVQ 269
YCV CEE+K+E+ELLE + CPIH+ V R E NYFF LSKYQ+ L D E+PDFVQ
Sbjct: 125 WYCVECEEFKEERELLEGRRCPIHVNRTVEWRDERNYFFRLSKYQQALLDHYAEHPDFVQ 184
Query: 270 PSFRLNEVQGWIKSGLRDFSISRASVDWGIPVPNDNKQTIYVWFDALLGYISALSEDRDQ 329
P R NEV +I+ GL+DFSISR ++ WG PVP D +QT+YVWFDALLGY++AL E D+
Sbjct: 185 PPSRRNEVLSFIERGLQDFSISRVNLAWGFPVPTDPEQTLYVWFDALLGYVTALLEPEDE 244
Query: 330 PSLRTAVSSGWPASL 344
P+L A+ + WP +L
Sbjct: 245 PTLANALKTWWPINL 259
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Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. Thermosynechococcus elongatus (strain BP-1) (taxid: 197221) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 0 |
| >sp|Q55729|SYM_SYNY3 Methionine--tRNA ligase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=metG PE=3 SV=1 | Back alignment and function description |
|---|
Score = 294 bits (753), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 135/255 (52%), Positives = 180/255 (70%), Gaps = 1/255 (0%)
Query: 91 FVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGG 150
F +TTPLYYVN PH+GSAYTT+ AD +ARF+RL G V+ ITGTDEHG+KI A
Sbjct: 9 FSVTTPLYYVNDVPHLGSAYTTVVADTLARFKRLQGYDVLMITGTDEHGQKIQRTAEAQE 68
Query: 151 SSPSEHCDVVSQAYKTLWKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEG 210
P HCD +K LW+ L+I YD+F RTT+P+H AIVK+F+ V GDIY A +G
Sbjct: 69 LDPQTHCDRTVVKFKELWRSLNILYDRFSRTTDPRHLAIVKDFFQRVWDKGDIYLAQQQG 128
Query: 211 LYCVNCEEYKDEKELLENQCCPIHL-KPCVARKEDNYFFALSKYQKLLEDTLTENPDFVQ 269
YCV CEE+K++++LLE+ CP+H + R E+NYFF LS+YQ LE+ + P+F+Q
Sbjct: 129 WYCVACEEFKEKRDLLEDNHCPLHPNRKAEWRDEENYFFRLSRYQHPLEELYAQRPEFIQ 188
Query: 270 PSFRLNEVQGWIKSGLRDFSISRASVDWGIPVPNDNKQTIYVWFDALLGYISALSEDRDQ 329
PS R NEV ++ GL+DFSISR ++DWG P+PND TIYVWFDALLGY++AL ++ ++
Sbjct: 189 PSSRRNEVLNFVAQGLQDFSISRVNLDWGFPLPNDPNHTIYVWFDALLGYVTALLDEDEE 248
Query: 330 PSLRTAVSSGWPASL 344
P+L A+ WP +L
Sbjct: 249 PNLTNALVKWWPINL 263
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Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 0 |
| >sp|O67298|SYM_AQUAE Methionine--tRNA ligase OS=Aquifex aeolicus (strain VF5) GN=metG PE=1 SV=1 | Back alignment and function description |
|---|
Score = 267 bits (682), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 134/256 (52%), Positives = 166/256 (64%), Gaps = 11/256 (4%)
Query: 91 FVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGG 150
F +TTP+YYVN PH+G AYTTIAAD IAR+ RL V F+TGTDEHG KI A + G
Sbjct: 7 FYVTTPIYYVNDVPHLGHAYTTIAADTIARYYRLRDYDVFFLTGTDEHGLKIQKKAEELG 66
Query: 151 SSPSEHCDVVSQAYKTLWKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEG 210
SP E D ++ +K LW+ L I Y KFIRTT+P H V++ + GDIY +YEG
Sbjct: 67 ISPKELVDRNAERFKKLWEFLKIEYTKFIRTTDPYHVKFVQKVFEECYKRGDIYLGEYEG 126
Query: 211 LYCVNCEEYKDEKELLENQCCPIHLKPCVARKEDNYFFALSKYQKLLEDTLTENPDFVQP 270
YCV CEE+K E EL E+ CPIH K C KE +YFF LSKYQ L + +NP+F+QP
Sbjct: 127 WYCVGCEEFKSEAELAEDHTCPIHQKKCEYIKEPSYFFRLSKYQDKLLELYEKNPEFIQP 186
Query: 271 SFRLNEVQGWIKSGLRDFSIS--RASVDWGIPVPNDNKQTIYVWFDALLGYISALSEDRD 328
+R NE+ ++K GL+D S++ R+ V WGIPVP D + TIYVWFDAL YISAL ED+
Sbjct: 187 DYRRNEIISFVKQGLKDLSVTRPRSRVKWGIPVPFDPEHTIYVWFDALFNYISAL-EDK- 244
Query: 329 QPSLRTAVSSGWPASL 344
V WPA L
Sbjct: 245 -------VEIYWPADL 253
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Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. Aquifex aeolicus (strain VF5) (taxid: 224324) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 0 |
| >sp|O33925|SYM_THEMA Methionine--tRNA ligase OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) GN=metG PE=3 SV=1 | Back alignment and function description |
|---|
Score = 253 bits (645), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 120/257 (46%), Positives = 166/257 (64%), Gaps = 7/257 (2%)
Query: 91 FVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGG 150
F +TTP+YYVN+ PH+GSAYTTI AD IAR++R +G V F+TGTDEHG+K+ AA G
Sbjct: 3 FYITTPIYYVNSEPHIGSAYTTIVADIIARYKRFMGYDVFFLTGTDEHGQKVLQAAQQAG 62
Query: 151 SSPSEHCDVVSQAYKTLWKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEG 210
P E CD +++ +K LWK+L I D FIRTT+ H V+EF + + NGD+YK Y+G
Sbjct: 63 KDPQEFCDELAEKFKRLWKELKITNDYFIRTTDEMHMKTVQEFVAKMKENGDVYKGIYKG 122
Query: 211 LYCVNCEEYKDEKELL---ENQCCPIHLKPCVARKEDNYFFALSKYQKLLEDTLTENPDF 267
YCV CE + +E E++ E + CP +P +E+NYFF LSKY+ L E+PDF
Sbjct: 123 WYCVPCETFWNEDEVIKEGEERFCPECKRPVKWVEEENYFFRLSKYRDSLLKYYEEHPDF 182
Query: 268 VQPSFRLNEVQGWIKSGLRDFSISRASVDWGIPVPNDNKQTIYVWFDALLGYISALSEDR 327
V+P FR NE+ ++ GL+D SI+R + WG+P+ +D + IYVW DAL+ YISA+
Sbjct: 183 VEPDFRRNEMLKILEGGLKDLSITRTTFKWGVPMKDDPEHVIYVWVDALINYISAIGYGW 242
Query: 328 DQPSLRTAVSSGWPASL 344
+ + WPA L
Sbjct: 243 NDEMF----NKWWPADL 255
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Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) (taxid: 243274) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 0 |
| >sp|Q9F2I9|SYM_STRCO Methionine--tRNA ligase OS=Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145) GN=metG PE=3 SV=1 | Back alignment and function description |
|---|
Score = 249 bits (636), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 124/256 (48%), Positives = 164/256 (64%), Gaps = 11/256 (4%)
Query: 77 ATNTDKSGTEPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTD 136
AT T+K G A + ++TP+YYVN PH+G AYTT+A D + R+ R G+KV ++TGTD
Sbjct: 3 ATGTEKQG---AKAYYVSTPIYYVNDAPHLGHAYTTVAGDVLTRWHRQRGEKVWYLTGTD 59
Query: 137 EHGEKIAAAAADGGSSPSEHCD-VVSQAYKTLWKDLDIAYDKFIRTTEPKHEAIVKEFYS 195
EHG+KI A G +P D +V++++K LW+ LDIA D FIRTT+ +H V+EF
Sbjct: 60 EHGQKIMRTAEANGVTPQAWADKLVTESWKPLWEHLDIANDDFIRTTQKRHTDRVQEFVQ 119
Query: 196 SVLANGDIYKADYEGLYCVNCEEYKDEKELLENQ-------CCPIHLKPCVARKEDNYFF 248
+ G+IYK YEG YCV CEEYK ELL+ + CPIH KP E+NYFF
Sbjct: 120 DLYDKGEIYKGGYEGPYCVGCEEYKLPGELLDGEGEYAGQKLCPIHKKPVEILSEENYFF 179
Query: 249 ALSKYQKLLEDTLTENPDFVQPSFRLNEVQGWIKSGLRDFSISRASVDWGIPVPNDNKQT 308
LS+Y + L NP FVQP NEV +++ GL+D SISR++ DWG+PVP D+K
Sbjct: 180 KLSEYSEKLLAHYEANPGFVQPESARNEVVNFVRQGLQDLSISRSTFDWGVPVPWDDKHV 239
Query: 309 IYVWFDALLGYISALS 324
IYVW DALL Y +A+
Sbjct: 240 IYVWVDALLNYATAVG 255
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Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145) (taxid: 100226) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 0 |
| >sp|P23395|SYM_THET8 Methionine--tRNA ligase OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=metG PE=1 SV=2 | Back alignment and function description |
|---|
Score = 248 bits (633), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 120/235 (51%), Positives = 151/235 (64%), Gaps = 3/235 (1%)
Query: 91 FVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGG 150
F +TTP+YYVNA PH+G AYTT+ AD +AR+ RL G + F+TGTDEHGE + AA G
Sbjct: 5 FYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAAG 64
Query: 151 SSPSEHCDVVSQAYKTLWKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEG 210
P D VS +K W L IAYD FIRTTE +H+ +V+ V GDIY +YEG
Sbjct: 65 EDPKAFVDRVSGRFKRAWDLLGIAYDDFIRTTEERHKKVVQLVLKKVYEAGDIYYGEYEG 124
Query: 211 LYCVNCEEYKDEKELLENQCCPIHLKPCVARKEDNYFFALSKYQKLLEDTLTENPDFVQP 270
LYCV+CE + EKEL+E CPIH +P RKE NYFF + KY+ L++ + ENPD ++P
Sbjct: 125 LYCVSCERFYTEKELVEG-LCPIHGRPVERRKEGNYFFRMEKYRPWLQEYIQENPDLIRP 183
Query: 271 SFRLNEVQGWIKSGLRDFSISR--ASVDWGIPVPNDNKQTIYVWFDALLGYISAL 323
NEV + + D SISR + V WGIP+P D YVWFDALL Y+SAL
Sbjct: 184 EGYRNEVLAMLAEPIGDLSISRPKSRVPWGIPLPWDENHVTYVWFDALLNYVSAL 238
|
Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) (taxid: 300852) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 0 |
| >sp|Q899D9|SYM_CLOTE Methionine--tRNA ligase OS=Clostridium tetani (strain Massachusetts / E88) GN=metG PE=3 SV=1 | Back alignment and function description |
|---|
Score = 243 bits (619), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 121/255 (47%), Positives = 163/255 (63%), Gaps = 5/255 (1%)
Query: 91 FVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGG 150
F +TTP+YY +A H+G+ YTT+AADA+ARF+RL G V+F+TGTDEHG+KI A + G
Sbjct: 6 FYITTPIYYPSAKLHIGNTYTTVAADALARFKRLTGHDVLFLTGTDEHGQKIQRVAEEKG 65
Query: 151 SSPSEHCDVVSQAYKTLWKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEG 210
P E+ D + + K LWK ++I+YDKFIRTT+ H V++ + + GDIYK +YEG
Sbjct: 66 LKPKEYLDNMVDSIKELWKSMNISYDKFIRTTDDYHIESVQKIFKKLYEQGDIYKGEYEG 125
Query: 211 LYCVNCEEYKDEKELLENQCCPIHLKPCVARKEDNYFFALSKYQKLLEDTLTENPDFVQP 270
YC CE + E + L++ CP +P KE+ YFF +SKY L + ENP F+QP
Sbjct: 126 WYCTPCESFWTESQ-LDDHNCPDCGRPVEKTKEEAYFFKMSKYADRLIKYIEENPHFIQP 184
Query: 271 SFRLNEV-QGWIKSGLRDFSISRASVDWGIPVPNDNKQTIYVWFDALLGYISALSEDRDQ 329
R NE+ ++K GL+D ISR S DWGIPV DNK IYVW DAL YI+AL + D
Sbjct: 185 ESRKNEMLNNFLKPGLQDLCISRTSFDWGIPVSFDNKHVIYVWIDALSNYITALGYNSDN 244
Query: 330 PSLRTAVSSGWPASL 344
L + WPA++
Sbjct: 245 QEL---LEKFWPANV 256
|
Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. Clostridium tetani (strain Massachusetts / E88) (taxid: 212717) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 0 |
| >sp|Q8XHG1|SYM_CLOPE Methionine--tRNA ligase OS=Clostridium perfringens (strain 13 / Type A) GN=metG PE=3 SV=1 | Back alignment and function description |
|---|
Score = 240 bits (613), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 120/256 (46%), Positives = 161/256 (62%), Gaps = 5/256 (1%)
Query: 90 PFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADG 149
P+ +TTP+YY + H+G+ YTT+AADAIARF+RL G +V+F+TGTDEHG+KI A +
Sbjct: 5 PYYITTPIYYPSTNLHIGNTYTTVAADAIARFKRLTGHEVMFLTGTDEHGQKIERIANEK 64
Query: 150 GSSPSEHCDVVSQAYKTLWKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADYE 209
G +P EH D + K LWK ++I+YDKFIRTT+ H V+E + + GDIYK YE
Sbjct: 65 GITPKEHVDEIVAGIKDLWKMMNISYDKFIRTTDDYHVKAVQEIFKKLYDQGDIYKDSYE 124
Query: 210 GLYCVNCEEYKDEKELLENQCCPIHLKPCVARKEDNYFFALSKYQKLLEDTLTENPDFVQ 269
GLYC CE + E +L+ N CP +P KE+ YFF +SKY L + E+PDF+Q
Sbjct: 125 GLYCTPCESFWTETQLV-NGNCPDCGRPVEKAKEEAYFFKMSKYADRLIQYIEEHPDFIQ 183
Query: 270 PSFRLNEV-QGWIKSGLRDFSISRASVDWGIPVPNDNKQTIYVWFDALLGYISALSEDRD 328
P R NE+ +++ GL+D +SR S WGIPV D K IYVW DAL YI+AL ++
Sbjct: 184 PESRKNEMLNNFLRPGLQDLCVSRTSFTWGIPVSFDEKHVIYVWIDALSNYITALGYGQE 243
Query: 329 QPSLRTAVSSGWPASL 344
L WPA +
Sbjct: 244 NQELYKKF---WPADV 256
|
Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. Clostridium perfringens (strain 13 / Type A) (taxid: 195102) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 0 |
| >sp|Q1RJZ5|SYM_RICBR Methionine--tRNA ligase OS=Rickettsia bellii (strain RML369-C) GN=metG PE=3 SV=1 | Back alignment and function description |
|---|
Score = 239 bits (609), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 120/256 (46%), Positives = 160/256 (62%), Gaps = 5/256 (1%)
Query: 89 DPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAAD 148
+ + +TTP+YYVN PH+G AYT++A+D IARF RL G +V+F+TGTDEHG+K+ AA D
Sbjct: 3 NTYYITTPIYYVNDVPHIGHAYTSVASDVIARFMRLSGHEVMFLTGTDEHGQKVEKAAID 62
Query: 149 GGSSPSEHCDVVSQAYKTLWKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADY 208
P + D SQ+++ L + I+ D FIRTTE +H+ V F+ +L NG IY+ Y
Sbjct: 63 KNIDPQKFTDQTSQSFRHLMTAMHISNDDFIRTTEERHKKAVAIFWQKLLDNGSIYEGFY 122
Query: 209 EGLYCVNCEEYKDEKELLENQCCPIHLKPCVARKEDNYFFALSKYQKLLEDTLTENPDFV 268
EG Y V E + DE EL ++ P KE +YFF LSK+Q L + NPDF+
Sbjct: 123 EGWYAVRDEAFYDESELTADKLAPTG-AAVEWVKEPSYFFNLSKWQDKLLEFYEANPDFI 181
Query: 269 QPSFRLNEVQGWIKSGLRDFSISRASVDWGIPVPNDNKQTIYVWFDALLGYISALSEDRD 328
+P R NEV ++KSGL+D S+SR + +WGI VPNDNK IYVW DAL YISAL
Sbjct: 182 RPISRRNEVISFVKSGLKDLSVSRTTFNWGIKVPNDNKHVIYVWLDALANYISALG---- 237
Query: 329 QPSLRTAVSSGWPASL 344
P + WPA+L
Sbjct: 238 YPDQNSNYGKFWPANL 253
|
Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. Rickettsia bellii (strain RML369-C) (taxid: 336407) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 0 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 345 | ||||||
| 449449980 | 611 | PREDICTED: methionine--tRNA ligase-like | 0.918 | 0.518 | 0.782 | 1e-151 | |
| 255575064 | 523 | methionine-tRNA synthetase, putative [Ri | 0.913 | 0.602 | 0.771 | 1e-146 | |
| 359486632 | 611 | PREDICTED: methionyl-tRNA synthetase-lik | 0.913 | 0.515 | 0.807 | 1e-146 | |
| 224112799 | 610 | predicted protein [Populus trichocarpa] | 0.918 | 0.519 | 0.780 | 1e-145 | |
| 356536480 | 605 | PREDICTED: methionyl-tRNA synthetase-lik | 0.904 | 0.515 | 0.767 | 1e-140 | |
| 356575379 | 605 | PREDICTED: methionyl-tRNA synthetase-lik | 0.904 | 0.515 | 0.760 | 1e-139 | |
| 15233258 | 616 | methionyl-tRNA synthetase [Arabidopsis t | 0.913 | 0.511 | 0.733 | 1e-138 | |
| 297820298 | 615 | hypothetical protein ARALYDRAFT_906959 [ | 0.910 | 0.510 | 0.748 | 1e-138 | |
| 145332859 | 533 | methionyl-tRNA synthetase [Arabidopsis t | 0.913 | 0.590 | 0.733 | 1e-138 | |
| 13605910 | 616 | AT3g55400/T22E16_60 [Arabidopsis thalian | 0.913 | 0.511 | 0.730 | 1e-138 |
| >gi|449449980|ref|XP_004142742.1| PREDICTED: methionine--tRNA ligase-like [Cucumis sativus] gi|449483865|ref|XP_004156716.1| PREDICTED: methionine--tRNA ligase-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 539 bits (1389), Expect = e-151, Method: Compositional matrix adjust.
Identities = 255/326 (78%), Positives = 283/326 (86%), Gaps = 9/326 (2%)
Query: 28 MAARINYSIQNSLWLLNPLHSKAT---THFRNRLKFRQNLFSL-----SKGAVFCSYATN 79
MAARIN SIQ SLWLLNP HS THFR RL F QNL S SK A+FC+ +N
Sbjct: 1 MAARINTSIQTSLWLLNPFHSSLNLKPTHFRTRLHFCQNLLSFPSHSSSKRAIFCTSTSN 60
Query: 80 TDKSGTEPA-DPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEH 138
+ + A DPFV+TTPLYYVNA PHMGSAYTTIAADA+ARFQRLLGKKVIFITGTDEH
Sbjct: 61 FNSHDSGAATDPFVITTPLYYVNAAPHMGSAYTTIAADAVARFQRLLGKKVIFITGTDEH 120
Query: 139 GEKIAAAAADGGSSPSEHCDVVSQAYKTLWKDLDIAYDKFIRTTEPKHEAIVKEFYSSVL 198
GEKIA AAA GS+PSEHCD++S+AYKTLWKDLD+AYDKFIRTT+PKHEAIVKEFYS VL
Sbjct: 121 GEKIATAAATQGSTPSEHCDIISEAYKTLWKDLDVAYDKFIRTTDPKHEAIVKEFYSKVL 180
Query: 199 ANGDIYKADYEGLYCVNCEEYKDEKELLENQCCPIHLKPCVARKEDNYFFALSKYQKLLE 258
ANGDIY+ADYEGLYCVNCEEYKDEKELL + CCPIHLKPC +RKEDNYFFALSKYQ+LLE
Sbjct: 181 ANGDIYRADYEGLYCVNCEEYKDEKELLADNCCPIHLKPCASRKEDNYFFALSKYQRLLE 240
Query: 259 DTLTENPDFVQPSFRLNEVQGWIKSGLRDFSISRASVDWGIPVPNDNKQTIYVWFDALLG 318
+TLT+NP FVQP+FRLNEVQ WI+SGL+DFSISRASV+WGIPVPND KQTIYVWFDALLG
Sbjct: 241 ETLTQNPGFVQPAFRLNEVQSWIRSGLKDFSISRASVEWGIPVPNDEKQTIYVWFDALLG 300
Query: 319 YISALSEDRDQPSLRTAVSSGWPASL 344
YISALSE+ +QP+L+ V+SGWPASL
Sbjct: 301 YISALSENGEQPNLQEVVASGWPASL 326
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255575064|ref|XP_002528437.1| methionine-tRNA synthetase, putative [Ricinus communis] gi|223532113|gb|EEF33920.1| methionine-tRNA synthetase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 523 bits (1348), Expect = e-146, Method: Compositional matrix adjust.
Identities = 257/333 (77%), Positives = 283/333 (84%), Gaps = 18/333 (5%)
Query: 30 ARINYSIQNSLWLLNPLHS------KATTHFRNRLKFRQNLF---SLSKGAVFCS----- 75
ARIN+SIQN+ LLNPL+S TTH +NRL F +NL S S+ A FC+
Sbjct: 2 ARINHSIQNTFSLLNPLYSITSKSRTTTTHLKNRLNFSKNLIFSSSASRKAQFCTCTISN 61
Query: 76 ----YATNTDKSGTEPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIF 131
+ A+ FVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIF
Sbjct: 62 SNSNIHNSAQNGEAVAAETFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIF 121
Query: 132 ITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKDLDIAYDKFIRTTEPKHEAIVK 191
+TGTDEHGEKIAAAAA GSSPSEHCDV+SQ Y+TLWKDL+I+YDKFIRTT+PKHEAIVK
Sbjct: 122 VTGTDEHGEKIAAAAAACGSSPSEHCDVISQDYRTLWKDLEISYDKFIRTTDPKHEAIVK 181
Query: 192 EFYSSVLANGDIYKADYEGLYCVNCEEYKDEKELLENQCCPIHLKPCVARKEDNYFFALS 251
EFYS VLANGDIY+ADYEGLYCVNCEEYKD KELL+N CCP+HLKPC+ RKEDNYFFALS
Sbjct: 182 EFYSRVLANGDIYRADYEGLYCVNCEEYKDAKELLDNNCCPMHLKPCIERKEDNYFFALS 241
Query: 252 KYQKLLEDTLTENPDFVQPSFRLNEVQGWIKSGLRDFSISRASVDWGIPVPNDNKQTIYV 311
KYQKLLE+TLTENP+FVQPSFRLNEVQ WIKSGL+DFSISRASVDWGIPVPNDNKQTIYV
Sbjct: 242 KYQKLLEETLTENPNFVQPSFRLNEVQSWIKSGLKDFSISRASVDWGIPVPNDNKQTIYV 301
Query: 312 WFDALLGYISALSEDRDQPSLRTAVSSGWPASL 344
WFDALLGYISALSED++QP+L+ AVSSGWPASL
Sbjct: 302 WFDALLGYISALSEDKEQPNLQNAVSSGWPASL 334
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359486632|ref|XP_002279143.2| PREDICTED: methionyl-tRNA synthetase-like [Vitis vinifera] gi|296086256|emb|CBI31697.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 523 bits (1346), Expect = e-146, Method: Compositional matrix adjust.
Identities = 260/322 (80%), Positives = 281/322 (87%), Gaps = 7/322 (2%)
Query: 29 AARINYSIQNSLWLL-NPLHSKATTHFRNRLKFRQNLFSLSKG----AVFCS-YATNTDK 82
A R++ SIQ+SL +L +PL+S + H + RL F + LFS A+FCS A N
Sbjct: 3 AVRVHSSIQSSLCILSHPLYS-TSRHLKTRLHFPRPLFSSPSFSSGRALFCSCRADNFKG 61
Query: 83 SGTEPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKI 142
S E +D FVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRL GKKVIFITGTDEHGEKI
Sbjct: 62 SEREVSDSFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLSGKKVIFITGTDEHGEKI 121
Query: 143 AAAAADGGSSPSEHCDVVSQAYKTLWKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGD 202
A AAA GSSPSEHCDV+SQAYKTLW+DLDIAYDKFIRTT PKHEAIVKEFYS VLANGD
Sbjct: 122 ATAAAACGSSPSEHCDVISQAYKTLWQDLDIAYDKFIRTTNPKHEAIVKEFYSRVLANGD 181
Query: 203 IYKADYEGLYCVNCEEYKDEKELLENQCCPIHLKPCVARKEDNYFFALSKYQKLLEDTLT 262
IY+ADYEGLYC+NCEEYKDEKELLEN CCP+HLKPCV RKEDNYFFALSKYQKLLE+TLT
Sbjct: 182 IYRADYEGLYCINCEEYKDEKELLENNCCPMHLKPCVLRKEDNYFFALSKYQKLLEETLT 241
Query: 263 ENPDFVQPSFRLNEVQGWIKSGLRDFSISRASVDWGIPVPNDNKQTIYVWFDALLGYISA 322
+NPDFVQPSFRLNEVQ WIKSGLRDFSISRASVDWGIPVPNDNKQTIYVWFDALLGYISA
Sbjct: 242 QNPDFVQPSFRLNEVQSWIKSGLRDFSISRASVDWGIPVPNDNKQTIYVWFDALLGYISA 301
Query: 323 LSEDRDQPSLRTAVSSGWPASL 344
LSED +QP L++AVSSGWPASL
Sbjct: 302 LSEDNEQPDLQSAVSSGWPASL 323
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224112799|ref|XP_002316296.1| predicted protein [Populus trichocarpa] gi|222865336|gb|EEF02467.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 519 bits (1337), Expect = e-145, Method: Compositional matrix adjust.
Identities = 252/323 (78%), Positives = 279/323 (86%), Gaps = 6/323 (1%)
Query: 28 MAARINYSIQNSLWLLNPLH---SKATTHFRNRLKFRQNLFSLSK--GAVFCSYA-TNTD 81
MAARINYS+QN+L LLNPL+ + TTHF+ + F +NL K FC+ A +N
Sbjct: 1 MAARINYSVQNTLCLLNPLNYSINAKTTHFKTGINFSKNLIFPRKLRRPTFCTCAISNNH 60
Query: 82 KSGTEPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEK 141
+E A+ FVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIF+TGTDEHGEK
Sbjct: 61 MQSSEAAETFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFVTGTDEHGEK 120
Query: 142 IAAAAADGGSSPSEHCDVVSQAYKTLWKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANG 201
IAA+AA GS+PSEHCDV+SQAYKTLWKDL+I YDKFIRTT+PKHE IVKEFYS VLA G
Sbjct: 121 IAASAAAAGSTPSEHCDVISQAYKTLWKDLEITYDKFIRTTDPKHEGIVKEFYSRVLAKG 180
Query: 202 DIYKADYEGLYCVNCEEYKDEKELLENQCCPIHLKPCVARKEDNYFFALSKYQKLLEDTL 261
DIY+ADYEGLYCVNCEEYKDEKELL+N+CCP HLKPC+ RKEDNYFFALSKYQK LE+ L
Sbjct: 181 DIYRADYEGLYCVNCEEYKDEKELLDNKCCPTHLKPCIERKEDNYFFALSKYQKQLEENL 240
Query: 262 TENPDFVQPSFRLNEVQGWIKSGLRDFSISRASVDWGIPVPNDNKQTIYVWFDALLGYIS 321
T+NP FVQP FRLNEVQ WIKSGL+DFSISRASVDWGIPVPNDNKQTIYVWFDALLGYIS
Sbjct: 241 TQNPKFVQPPFRLNEVQSWIKSGLKDFSISRASVDWGIPVPNDNKQTIYVWFDALLGYIS 300
Query: 322 ALSEDRDQPSLRTAVSSGWPASL 344
ALS + +QP L+TAVSSGWPASL
Sbjct: 301 ALSAENEQPDLQTAVSSGWPASL 323
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356536480|ref|XP_003536765.1| PREDICTED: methionyl-tRNA synthetase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 504 bits (1299), Expect = e-140, Method: Compositional matrix adjust.
Identities = 247/322 (76%), Positives = 276/322 (85%), Gaps = 10/322 (3%)
Query: 28 MAARINYSIQNSLWLLNP----LHSKAT-THFRNRLKFRQNLFSLSKGAVFCSYATNTDK 82
MA RIN SIQN+L LLNP L +A+ + +L FRQN S+GA+FC+ AT TD
Sbjct: 1 MAVRINCSIQNTLCLLNPPLFSLRYRASPLKLKPQLHFRQNP---SRGALFCTCAT-TDI 56
Query: 83 SGTEPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKI 142
+ +PFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKI
Sbjct: 57 T-PHNTEPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKI 115
Query: 143 AAAAADGGSSPSEHCDVVSQAYKTLWKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGD 202
A AA GS+P +HC+++SQ+Y TLWKDLDI+YDKFIRTT+ KHEAIVKEFYS VLANGD
Sbjct: 116 ATAAMAQGSTPPDHCNLISQSYMTLWKDLDISYDKFIRTTDSKHEAIVKEFYSRVLANGD 175
Query: 203 IYKADYEGLYCVNCEEYKDEKELLENQCCPIHLKPCVARKEDNYFFALSKYQKLLEDTLT 262
IY+ADY+GLYCVNCEEYKDEKELL+N CCP+HLKPCV+RKEDNYFFALSKYQK LEDTL
Sbjct: 176 IYRADYDGLYCVNCEEYKDEKELLDNNCCPVHLKPCVSRKEDNYFFALSKYQKALEDTLN 235
Query: 263 ENPDFVQPSFRLNEVQGWIKSGLRDFSISRASVDWGIPVPNDNKQTIYVWFDALLGYISA 322
+NP+FVQPSFRLNEVQ WI SGLRDFSISRASVDWGIPVP+D QTIYVWFDALLGYISA
Sbjct: 236 KNPNFVQPSFRLNEVQSWINSGLRDFSISRASVDWGIPVPDDKTQTIYVWFDALLGYISA 295
Query: 323 LSEDRDQPSLRTAVSSGWPASL 344
LS+D++QP L VSSGWPASL
Sbjct: 296 LSDDQEQPDLLKTVSSGWPASL 317
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356575379|ref|XP_003555819.1| PREDICTED: methionyl-tRNA synthetase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 501 bits (1291), Expect = e-139, Method: Compositional matrix adjust.
Identities = 245/322 (76%), Positives = 277/322 (86%), Gaps = 10/322 (3%)
Query: 28 MAARINYSIQNSLWLLNP----LHSKATT-HFRNRLKFRQNLFSLSKGAVFCSYATNTDK 82
MA RIN SIQN+L LLNP L +A++ + +L FRQN S+GA+FC+ AT TD
Sbjct: 1 MAVRINSSIQNTLCLLNPPLFSLRYRASSLKLKPQLHFRQNP---SRGALFCTCAT-TDI 56
Query: 83 SGTEPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKI 142
+ + + FVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGK VIFITGTDEHGEKI
Sbjct: 57 T-PQSTEHFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKSVIFITGTDEHGEKI 115
Query: 143 AAAAADGGSSPSEHCDVVSQAYKTLWKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGD 202
A AA GS+P +HC+++S++YKTLWKDLDI+YDKFIRTT+ KHEAIVKEFYS VLANGD
Sbjct: 116 ATAAMAQGSTPPDHCNLISRSYKTLWKDLDISYDKFIRTTDSKHEAIVKEFYSRVLANGD 175
Query: 203 IYKADYEGLYCVNCEEYKDEKELLENQCCPIHLKPCVARKEDNYFFALSKYQKLLEDTLT 262
IY+ADY+GLYCVNCEEYKDEKELL+N CCP+HLKPCV+RKEDNYFFALSKYQK LEDTL
Sbjct: 176 IYRADYDGLYCVNCEEYKDEKELLDNNCCPVHLKPCVSRKEDNYFFALSKYQKALEDTLY 235
Query: 263 ENPDFVQPSFRLNEVQGWIKSGLRDFSISRASVDWGIPVPNDNKQTIYVWFDALLGYISA 322
NP+FVQPSFRLNEVQ WIKSGLRDFSISRASV+WGIPVP+D QTIYVWFDALLGYISA
Sbjct: 236 RNPNFVQPSFRLNEVQSWIKSGLRDFSISRASVEWGIPVPDDKTQTIYVWFDALLGYISA 295
Query: 323 LSEDRDQPSLRTAVSSGWPASL 344
LS+D++QP L VSSGWPASL
Sbjct: 296 LSDDQEQPDLLKTVSSGWPASL 317
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15233258|ref|NP_191100.1| methionyl-tRNA synthetase [Arabidopsis thaliana] gi|7076783|emb|CAB75898.1| methionyl-tRNA synthetase (AtcpMetRS) [Arabidopsis thaliana] gi|332645858|gb|AEE79379.1| methionyl-tRNA synthetase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 498 bits (1283), Expect = e-138, Method: Compositional matrix adjust.
Identities = 239/326 (73%), Positives = 272/326 (83%), Gaps = 11/326 (3%)
Query: 28 MAARINYSIQNSLWLL----NPLHSKATTHFRNRLKFRQNL-----FSLSKGAVFCSYAT 78
MAARIN S+ N+L L PL++K + RN +F + L FS K A++C+ +
Sbjct: 1 MAARINTSLHNALSFLKPFNTPLNTKPFSFRRNSFRFSKKLPYYSQFSSGKRALYCT--S 58
Query: 79 NTDKSGTEPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEH 138
++ +S + + FVLTTPLYYVNAPPHMGSAYTTIAAD+IARFQRLLGKKVIFITGTDEH
Sbjct: 59 SSQESTVDEGETFVLTTPLYYVNAPPHMGSAYTTIAADSIARFQRLLGKKVIFITGTDEH 118
Query: 139 GEKIAAAAADGGSSPSEHCDVVSQAYKTLWKDLDIAYDKFIRTTEPKHEAIVKEFYSSVL 198
GEKIA +AA G +P EHCD++SQ+Y+TLWKDLDIAYDKFIRTT+PKHEAIVKEFY+ V
Sbjct: 119 GEKIATSAAANGRNPPEHCDLISQSYRTLWKDLDIAYDKFIRTTDPKHEAIVKEFYARVF 178
Query: 199 ANGDIYKADYEGLYCVNCEEYKDEKELLENQCCPIHLKPCVARKEDNYFFALSKYQKLLE 258
ANGDIY+ADYEGLYCVNCEEYKDEKELLEN CCP+H PCVARKEDNYFFALSKYQK LE
Sbjct: 179 ANGDIYRADYEGLYCVNCEEYKDEKELLENNCCPVHQMPCVARKEDNYFFALSKYQKPLE 238
Query: 259 DTLTENPDFVQPSFRLNEVQGWIKSGLRDFSISRASVDWGIPVPNDNKQTIYVWFDALLG 318
D L +NP FVQPS+RLNEVQ WIKSGLRDFSISRA VDWGIPVP+D+KQTIYVWFDALLG
Sbjct: 239 DILAQNPRFVQPSYRLNEVQSWIKSGLRDFSISRALVDWGIPVPDDDKQTIYVWFDALLG 298
Query: 319 YISALSEDRDQPSLRTAVSSGWPASL 344
YISAL+ED Q +L TAVS GWPASL
Sbjct: 299 YISALTEDNKQQNLETAVSFGWPASL 324
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297820298|ref|XP_002878032.1| hypothetical protein ARALYDRAFT_906959 [Arabidopsis lyrata subsp. lyrata] gi|297323870|gb|EFH54291.1| hypothetical protein ARALYDRAFT_906959 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 498 bits (1282), Expect = e-138, Method: Compositional matrix adjust.
Identities = 244/326 (74%), Positives = 273/326 (83%), Gaps = 12/326 (3%)
Query: 28 MAARINYSIQNSLWLLN----PLHSKATTHFRNRLKFRQNL-----FSLSKGAVFCSYAT 78
MAARIN S+ N+L LLN PL+ K T RN +F + L S K A++C+Y++
Sbjct: 1 MAARINTSLHNALSLLNAFNTPLNYKPFT-CRNCFRFSKKLPYYSQSSSGKRALYCTYSS 59
Query: 79 NTDKSGTEPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEH 138
+S + AD FVLTTPLYYVNAPPHMGSAYTTIAAD+IARFQRLLGKKVIFITGTDEH
Sbjct: 60 Q--ESTVDGADTFVLTTPLYYVNAPPHMGSAYTTIAADSIARFQRLLGKKVIFITGTDEH 117
Query: 139 GEKIAAAAADGGSSPSEHCDVVSQAYKTLWKDLDIAYDKFIRTTEPKHEAIVKEFYSSVL 198
GEKIA +AA G +P EHCD++SQ+Y+TLWKDLDIAYDKFIRTT+PKHEAIVKEFY+ V
Sbjct: 118 GEKIATSAAANGRNPPEHCDIISQSYRTLWKDLDIAYDKFIRTTDPKHEAIVKEFYARVF 177
Query: 199 ANGDIYKADYEGLYCVNCEEYKDEKELLENQCCPIHLKPCVARKEDNYFFALSKYQKLLE 258
ANGDIY+ADYEGLYCVNCEEYKDEKELLEN CCP+H PCVARKEDNYFFALSKYQK LE
Sbjct: 178 ANGDIYRADYEGLYCVNCEEYKDEKELLENNCCPVHQMPCVARKEDNYFFALSKYQKPLE 237
Query: 259 DTLTENPDFVQPSFRLNEVQGWIKSGLRDFSISRASVDWGIPVPNDNKQTIYVWFDALLG 318
D L +NP FVQPS+RLNEVQ WIKSGLRDFSISRA VDWGIPVP+D+KQTIYVWFDALLG
Sbjct: 238 DILAQNPRFVQPSYRLNEVQSWIKSGLRDFSISRALVDWGIPVPDDDKQTIYVWFDALLG 297
Query: 319 YISALSEDRDQPSLRTAVSSGWPASL 344
YISAL+ED Q +L TAVS GWPASL
Sbjct: 298 YISALTEDNKQQNLETAVSLGWPASL 323
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|145332859|ref|NP_001078295.1| methionyl-tRNA synthetase [Arabidopsis thaliana] gi|332645859|gb|AEE79380.1| methionyl-tRNA synthetase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 497 bits (1279), Expect = e-138, Method: Compositional matrix adjust.
Identities = 239/326 (73%), Positives = 272/326 (83%), Gaps = 11/326 (3%)
Query: 28 MAARINYSIQNSLWLL----NPLHSKATTHFRNRLKFRQNL-----FSLSKGAVFCSYAT 78
MAARIN S+ N+L L PL++K + RN +F + L FS K A++C+ +
Sbjct: 1 MAARINTSLHNALSFLKPFNTPLNTKPFSFRRNSFRFSKKLPYYSQFSSGKRALYCT--S 58
Query: 79 NTDKSGTEPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEH 138
++ +S + + FVLTTPLYYVNAPPHMGSAYTTIAAD+IARFQRLLGKKVIFITGTDEH
Sbjct: 59 SSQESTVDEGETFVLTTPLYYVNAPPHMGSAYTTIAADSIARFQRLLGKKVIFITGTDEH 118
Query: 139 GEKIAAAAADGGSSPSEHCDVVSQAYKTLWKDLDIAYDKFIRTTEPKHEAIVKEFYSSVL 198
GEKIA +AA G +P EHCD++SQ+Y+TLWKDLDIAYDKFIRTT+PKHEAIVKEFY+ V
Sbjct: 119 GEKIATSAAANGRNPPEHCDLISQSYRTLWKDLDIAYDKFIRTTDPKHEAIVKEFYARVF 178
Query: 199 ANGDIYKADYEGLYCVNCEEYKDEKELLENQCCPIHLKPCVARKEDNYFFALSKYQKLLE 258
ANGDIY+ADYEGLYCVNCEEYKDEKELLEN CCP+H PCVARKEDNYFFALSKYQK LE
Sbjct: 179 ANGDIYRADYEGLYCVNCEEYKDEKELLENNCCPVHQMPCVARKEDNYFFALSKYQKPLE 238
Query: 259 DTLTENPDFVQPSFRLNEVQGWIKSGLRDFSISRASVDWGIPVPNDNKQTIYVWFDALLG 318
D L +NP FVQPS+RLNEVQ WIKSGLRDFSISRA VDWGIPVP+D+KQTIYVWFDALLG
Sbjct: 239 DILAQNPRFVQPSYRLNEVQSWIKSGLRDFSISRALVDWGIPVPDDDKQTIYVWFDALLG 298
Query: 319 YISALSEDRDQPSLRTAVSSGWPASL 344
YISAL+ED Q +L TAVS GWPASL
Sbjct: 299 YISALTEDNKQQNLETAVSFGWPASL 324
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|13605910|gb|AAK32940.1|AF367354_1 AT3g55400/T22E16_60 [Arabidopsis thaliana] gi|22137164|gb|AAM91427.1| AT3g55400/T22E16_60 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 496 bits (1276), Expect = e-138, Method: Compositional matrix adjust.
Identities = 238/326 (73%), Positives = 271/326 (83%), Gaps = 11/326 (3%)
Query: 28 MAARINYSIQNSLWLL----NPLHSKATTHFRNRLKFRQNL-----FSLSKGAVFCSYAT 78
MAARIN S+ N+L L PL++K + RN +F + L FS K A++C+ +
Sbjct: 1 MAARINTSLHNALSFLKPFNTPLNTKPFSFRRNSFRFSKKLPYYSQFSSGKRALYCT--S 58
Query: 79 NTDKSGTEPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEH 138
++ +S + + FVLTTPLYYVNAPPHMGSAYTTIAAD+IARFQRLLGKKVIFITGTDEH
Sbjct: 59 SSQESTVDEGETFVLTTPLYYVNAPPHMGSAYTTIAADSIARFQRLLGKKVIFITGTDEH 118
Query: 139 GEKIAAAAADGGSSPSEHCDVVSQAYKTLWKDLDIAYDKFIRTTEPKHEAIVKEFYSSVL 198
GEKIA +AA G +P EHCD++SQ+Y+TLWKDLDIAYDKFIRTT+PKHEAIVKEFY+ V
Sbjct: 119 GEKIATSAAANGRNPPEHCDLISQSYRTLWKDLDIAYDKFIRTTDPKHEAIVKEFYARVF 178
Query: 199 ANGDIYKADYEGLYCVNCEEYKDEKELLENQCCPIHLKPCVARKEDNYFFALSKYQKLLE 258
ANGDIY+ADYEGLYCVNCEEYKDEK LLEN CCP+H PCVARKEDNYFFALSKYQK LE
Sbjct: 179 ANGDIYRADYEGLYCVNCEEYKDEKGLLENNCCPVHQMPCVARKEDNYFFALSKYQKPLE 238
Query: 259 DTLTENPDFVQPSFRLNEVQGWIKSGLRDFSISRASVDWGIPVPNDNKQTIYVWFDALLG 318
D L +NP FVQPS+RLNEVQ WIKSGLRDFSISRA VDWGIPVP+D+KQTIYVWFDALLG
Sbjct: 239 DILAQNPRFVQPSYRLNEVQSWIKSGLRDFSISRALVDWGIPVPDDDKQTIYVWFDALLG 298
Query: 319 YISALSEDRDQPSLRTAVSSGWPASL 344
YISAL+ED Q +L TAVS GWPASL
Sbjct: 299 YISALTEDNKQQNLETAVSFGWPASL 324
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 345 | ||||||
| TAIR|locus:2099966 | 616 | OVA1 "OVULE ABORTION 1" [Arabi | 0.913 | 0.511 | 0.723 | 7.8e-126 | |
| TIGR_CMR|GSU_2232 | 510 | GSU_2232 "methionyl-tRNA synth | 0.721 | 0.488 | 0.460 | 3.8e-62 | |
| TIGR_CMR|CHY_2621 | 653 | CHY_2621 "methionyl-tRNA synth | 0.724 | 0.382 | 0.456 | 5.7e-59 | |
| TIGR_CMR|CJE_0925 | 628 | CJE_0925 "methionyl-tRNA synth | 0.663 | 0.364 | 0.455 | 1.5e-53 | |
| TIGR_CMR|ECH_1000 | 506 | ECH_1000 "methionyl-tRNA synth | 0.663 | 0.452 | 0.458 | 4.1e-49 | |
| TIGR_CMR|BA_0036 | 660 | BA_0036 "methionyl-tRNA synthe | 0.744 | 0.389 | 0.385 | 1.2e-47 | |
| POMBASE|SPAC27E2.06c | 539 | SPAC27E2.06c "mitochondrial me | 0.727 | 0.465 | 0.408 | 3.4e-45 | |
| DICTYBASE|DDB_G0285759 | 575 | mmetS "methionyl-tRNA syntheta | 0.739 | 0.443 | 0.357 | 4.4e-45 | |
| TIGR_CMR|APH_1079 | 513 | APH_1079 "methionyl-tRNA synth | 0.663 | 0.446 | 0.420 | 7.1e-45 | |
| GENEDB_PFALCIPARUM|PF10_0340 | 889 | PF10_0340 "methionine --tRNA l | 0.721 | 0.280 | 0.392 | 9.2e-45 |
| TAIR|locus:2099966 OVA1 "OVULE ABORTION 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1236 (440.2 bits), Expect = 7.8e-126, P = 7.8e-126
Identities = 236/326 (72%), Positives = 268/326 (82%)
Query: 28 MAARINYSIQNSLWLLNP----LHSKATTHFRNRLKFRQNL-----FSLSKGAVFCSYAT 78
MAARIN S+ N+L L P L++K + RN +F + L FS K A++C+ +
Sbjct: 1 MAARINTSLHNALSFLKPFNTPLNTKPFSFRRNSFRFSKKLPYYSQFSSGKRALYCT--S 58
Query: 79 NTDKSGTEPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEH 138
++ +S + + FVLTTPLYYVNAPPHMGSAYTTIAAD+IARFQRLLGKKVIFITGTDEH
Sbjct: 59 SSQESTVDEGETFVLTTPLYYVNAPPHMGSAYTTIAADSIARFQRLLGKKVIFITGTDEH 118
Query: 139 GEKIXXXXXDGGSSPSEHCDVVSQAYKTLWKDLDIAYDKFIRTTEPKHEAIVKEFYSSVL 198
GEKI G +P EHCD++SQ+Y+TLWKDLDIAYDKFIRTT+PKHEAIVKEFY+ V
Sbjct: 119 GEKIATSAAANGRNPPEHCDLISQSYRTLWKDLDIAYDKFIRTTDPKHEAIVKEFYARVF 178
Query: 199 ANGDIYKADYEGLYCVNCEEYKDEKELLENQCCPIHLKPCVARKEDNYFFALSKYQKLLE 258
ANGDIY+ADYEGLYCVNCEEYKDEKELLEN CCP+H PCVARKEDNYFFALSKYQK LE
Sbjct: 179 ANGDIYRADYEGLYCVNCEEYKDEKELLENNCCPVHQMPCVARKEDNYFFALSKYQKPLE 238
Query: 259 DTLTENPDFVQPSFRLNEVQGWIKSGLRDFSISRASVDWGIPVPNDNKQTIYVWFDALLG 318
D L +NP FVQPS+RLNEVQ WIKSGLRDFSISRA VDWGIPVP+D+KQTIYVWFDALLG
Sbjct: 239 DILAQNPRFVQPSYRLNEVQSWIKSGLRDFSISRALVDWGIPVPDDDKQTIYVWFDALLG 298
Query: 319 YISALSEDRDQPSLRTAVSSGWPASL 344
YISAL+ED Q +L TAVS GWPASL
Sbjct: 299 YISALTEDNKQQNLETAVSFGWPASL 324
|
|
| TIGR_CMR|GSU_2232 GSU_2232 "methionyl-tRNA synthetase" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 635 (228.6 bits), Expect = 3.8e-62, P = 3.8e-62
Identities = 117/254 (46%), Positives = 165/254 (64%)
Query: 91 FVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIXXXXXDGG 150
F +TTP+YYVN PH+G AYTT+AAD +AR+++L G +V F+TGTDEHG+K+ G
Sbjct: 5 FYVTTPIYYVNDVPHIGHAYTTLAADVLARYKKLKGYEVFFLTGTDEHGQKVEKAANTAG 64
Query: 151 SSPSEHCDVVSQAYKTLWKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEG 210
+P E D V + ++ LW+ LDI Y FIRTT+ +H+ V ++ ++A GDIY +YE
Sbjct: 65 ETPLELADRVVKRFQGLWEKLDIQYTDFIRTTQERHKKGVSHIFTKIMAQGDIYLGEYED 124
Query: 211 LYCVNCEEYKDEKELLENQCCPIHLKPCVARKEDNYFFALSKYQKLLEDTLTENPDFVQP 270
YC CE + E +L++ +C P +P KE++YFF +SKYQ+ L + NPDF+QP
Sbjct: 125 WYCTPCETFWTETQLIDGKC-PDCNRPVDKLKEESYFFRMSKYQEQLLAHIEANPDFIQP 183
Query: 271 SFRLNEVQGWIKSGLRDFSISRASVDWGIPVPNDNKQTIYVWFDALLGYISALSEDRDQP 330
R NE+ ++K GLRD S+SR S +WGIPVP + K IYVWFDAL YI+AL +Q
Sbjct: 184 KSRRNEIISFVKEGLRDLSVSRTSFNWGIPVPGNEKHVIYVWFDALTNYITALGYPDEQS 243
Query: 331 SLRTAVSSGWPASL 344
+ +T WP +
Sbjct: 244 AFKTF----WPVDV 253
|
|
| TIGR_CMR|CHY_2621 CHY_2621 "methionyl-tRNA synthetase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 605 (218.0 bits), Expect = 5.7e-59, P = 5.7e-59
Identities = 116/254 (45%), Positives = 159/254 (62%)
Query: 91 FVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIXXXXXDGG 150
F +TTP+YY + H+G AYTT+AAD +ARF+R+ G V F+TG+DEHG+KI G
Sbjct: 5 FYITTPIYYPSDNLHIGHAYTTVAADTMARFKRMTGYDVWFLTGSDEHGQKIERKAKSQG 64
Query: 151 SSPSEHCDVVSQAYKTLWKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEG 210
SP E+ D + ++K LWK LDI+YD FIRTTE +H+ +V+ + + GDIYK+ YEG
Sbjct: 65 LSPKEYVDPIVDSFKHLWKLLDISYDDFIRTTEERHKKVVQAIFQKLYDQGDIYKSAYEG 124
Query: 211 LYCVNCEEYKDEKELLENQCCPIHLKPCVARKEDNYFFALSKYQKLLEDTLTENPDFVQP 270
YC CE + E +L++ +C P +P +E++YFF +SKY L + ENP+F+ P
Sbjct: 125 WYCTPCEAFWTEGKLIDGKC-PDCGRPVEWTREESYFFKMSKYADRLLKHIEENPEFIVP 183
Query: 271 SFRLNEVQGWIKSGLRDFSISRASVDWGIPVPNDNKQTIYVWFDALLGYISALSEDRDQP 330
R NE+ +IK GL D +SR + +WGIPVP D K +YVW DAL YISAL D
Sbjct: 184 ESRRNEMINFIKQGLEDLCVSRTTFNWGIPVPFDKKHVVYVWVDALTNYISALGYGTDDD 243
Query: 331 SLRTAVSSGWPASL 344
L WPA +
Sbjct: 244 HL---FQKYWPADV 254
|
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| TIGR_CMR|CJE_0925 CJE_0925 "methionyl-tRNA synthetase" [Campylobacter jejuni RM1221 (taxid:195099)] | Back alignment and assigned GO terms |
|---|
Score = 554 (200.1 bits), Expect = 1.5e-53, P = 1.5e-53
Identities = 107/235 (45%), Positives = 151/235 (64%)
Query: 93 LTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIXXXXXDGGSS 152
+TTP+YYVN PH+G AYTTI AD +ARF RL G + F+TGTDEHG+KI S+
Sbjct: 4 ITTPIYYVNDVPHLGHAYTTIIADTLARFYRLQGHETRFLTGTDEHGQKIEEAAKLRNST 63
Query: 153 PSEHCDVVSQAYKTLWKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLY 212
P E+ D +S +K LW + +I YD + RTT+ +H VK + + GDIYK +YEG Y
Sbjct: 64 PQEYADKISFEFKKLWDEFEITYDIYARTTDTRHIEFVKAMFLKMWQKGDIYKDEYEGHY 123
Query: 213 CVNCEEYKDEKELLENQCCPIHLKPCVARKEDNYFFALSKYQ-KLLEDTLTENPDFVQPS 271
C++CE + + +L+ + CP K KE++YFF LSKYQ K+L+ E D + P
Sbjct: 124 CISCESFFTQSQLINDCSCPDCGKQTRILKEESYFFKLSKYQDKILQ--WYEEKDPILPK 181
Query: 272 FRLNEVQGWIKSGLRDFSISRASVDWGIPVP---NDNKQTIYVWFDALLGYISAL 323
+ NE+ ++++GL+D SI+R S DWGI +P ND+K +YVW DAL Y+S+L
Sbjct: 182 NKKNELINFVQNGLKDLSITRTSFDWGIKLPQEINDDKHIVYVWLDALFIYVSSL 236
|
|
| TIGR_CMR|ECH_1000 ECH_1000 "methionyl-tRNA synthetase" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)] | Back alignment and assigned GO terms |
|---|
Score = 512 (185.3 bits), Expect = 4.1e-49, P = 4.1e-49
Identities = 106/231 (45%), Positives = 140/231 (60%)
Query: 93 LTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIXXXXXDGGSS 152
+TTP+YYVN PH+G YTT+ +D IARF RL G V FITGTDEHG+KI + S
Sbjct: 6 ITTPIYYVNDVPHIGHVYTTLISDIIARFMRLDGHSVKFITGTDEHGQKIEKAAQERNMS 65
Query: 153 PSEHCDVVSQAYKTLWKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLY 212
+ D S ++ L ++ +YD FIRTTE +H+ V + + NG IY Y G Y
Sbjct: 66 LLDFTDNTSAVFRQLADVMNYSYDDFIRTTETRHKKTVVALWQRLCDNGAIYLGSYSGWY 125
Query: 213 CVNCEEYKDEKELLENQCCPIHLKPCVARKEDNYFFALSKYQKLLEDTLTENPDFVQPSF 272
V E + EKEL++ + P +E +YFF LS +Q+ L ENPDFV P +
Sbjct: 126 SVRDETFYQEKELVDGKA-PTGAD-VEWIEEPSYFFRLSNFQERLLAFYEENPDFVIPKY 183
Query: 273 RLNEVQGWIKSGLRDFSISRASVDWGIPVPNDNKQTIYVWFDALLGYISAL 323
R NEV ++KSGL+D S+SR +V WGI VPND+K IYVW DAL Y++ L
Sbjct: 184 RYNEVISFVKSGLKDLSVSRQNVLWGIKVPNDDKHVIYVWVDALANYLTVL 234
|
|
| TIGR_CMR|BA_0036 BA_0036 "methionyl-tRNA synthetase" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 498 (180.4 bits), Expect = 1.2e-47, P = 1.2e-47
Identities = 104/270 (38%), Positives = 151/270 (55%)
Query: 85 TEPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIXX 144
TE F +TTP+YY + H+G AYTT+A DA+AR++ + G V ++TGTDEHG+KI
Sbjct: 2 TEENKSFYITTPIYYPSGKLHIGHAYTTVAGDAMARYKCMQGYNVHYLTGTDEHGQKIQK 61
Query: 145 XXXDGGSSPSEHCDVVSQAYKTLWKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIY 204
+ +P + D + K LW+ +DI+YD FIRTTE +H+ +V++ + ++ GDIY
Sbjct: 62 KAEELNVTPQAYVDNIVAGIKELWEKMDISYDDFIRTTEDRHKDVVEKIFKQLVDQGDIY 121
Query: 205 KADYEGLYCVNCEEYKDEKEL----LENQCCPIHLKPCVAR-----KEDNYFFALSKYQK 255
+YEG Y V E + E +L +E P +E++YFF + KY
Sbjct: 122 LDEYEGWYSVQDETFYTEHQLVDPIMEGDKVVGGKSPDSGHDVELVREESYFFRMGKYVD 181
Query: 256 LLEDTLTENPDFVQPSFRLNE-VQGWIKSGLRDFSISRASVDWGIPVPNDNKQTIYVWFD 314
L +NP F+QP R NE + +IK GL D ++SR S DWG+ VP + K IYVW D
Sbjct: 182 RLLKFYEDNPHFIQPESRKNEMINNFIKPGLEDLAVSRTSFDWGVRVPGNPKHVIYVWVD 241
Query: 315 ALLGYISALSEDRDQPSLRTAVSSGWPASL 344
AL YI+AL + + WPA +
Sbjct: 242 ALSNYITALGYGTENEEM---YKKFWPADV 268
|
|
| POMBASE|SPAC27E2.06c SPAC27E2.06c "mitochondrial methionine-tRNA ligase (predicted)" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
Score = 475 (172.3 bits), Expect = 3.4e-45, P = 3.4e-45
Identities = 110/269 (40%), Positives = 155/269 (57%)
Query: 90 PFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGK-KVIFITGTDEHGEKIXXXXXD 148
P+ LTTP++YVNA PH+G Y+ + DAIARFQ L VI TGTDEHG K+
Sbjct: 20 PYFLTTPIFYVNAAPHLGHLYSLVLTDAIARFQNLKPDVSVISSTGTDEHGLKVQTVAQT 79
Query: 149 GGSSPSEHCDVVSQAYKTLWKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADY 208
G SP + CD S+ + L + + FIRTT PKH+A V+EF+ ++ G I +
Sbjct: 80 EGVSPLQLCDRNSKRFADLAVAANTKFTHFIRTTNPKHQASVQEFWKTIQKAGMISFERH 139
Query: 209 EGLYCVNCEEYKDEKELLE------NQCCPIHL---KPCVARKEDNYFFALSKYQKLLED 259
EG YCV+ E + E + + Q + + K E NY F LSK+Q L +
Sbjct: 140 EGWYCVSDETFYPESAIQKVVDPATKQEKRVSMETGKEVQWSSEMNYHFLLSKFQSRLIE 199
Query: 260 TLTENPDFVQPSFRLNEVQGWIKSGLRDFSISRAS--VDWGIPVPNDNKQTIYVWFDALL 317
+NP+FVQPS +V +K+G+ D SISR + WGIPVP +++QTIYVW DAL+
Sbjct: 200 HYNKNPNFVQPSIFHTQVLEELKTGISDLSISRPKQRLSWGIPVPGNSQQTIYVWLDALI 259
Query: 318 GYISALSEDRDQPSL--RTAVSSGWPASL 344
YIS + P L ++++S+GWPA++
Sbjct: 260 NYISVIG----YPWLNEKSSLSAGWPANM 284
|
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| DICTYBASE|DDB_G0285759 mmetS "methionyl-tRNA synthetase, mitochondrial" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 474 (171.9 bits), Expect = 4.4e-45, P = 4.4e-45
Identities = 99/277 (35%), Positives = 152/277 (54%)
Query: 72 VFCSYATNTDKSGTEPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIF 131
+F +Y T+ + E ++TTP++YVN PPH+G Y+ + DA+ R+ R +G +F
Sbjct: 29 LFKNYCTSVKQ---EDKKKVLITTPIFYVNGPPHIGHLYSALLGDALGRWNRFIGNDTLF 85
Query: 132 ITGTDEHGEKIXXXXXDGGSSPSEHCDVVSQAYKTLWKDLDIAYDKFIRTTEPKHEAIVK 191
+TGTDEHG K+ G ++CD +S ++ L+ DI YD FIRTTEP+H+ V
Sbjct: 86 MTGTDEHGSKVDEAAKKNGLKTIDYCDKISNRFRELFDKADIKYDDFIRTTEPRHKEAVT 145
Query: 192 EFYSSVLANGDIYKADYEGLYCVNCEEYKDEKELLENQCC-----PIHLKPCVARK---- 242
++ +L G IYK Y+G YC + E + + ++ E PI K ++ +
Sbjct: 146 AIWNRLLERGYIYKGVYKGWYCTSDESFLTDDQVTEGMSPITPQNPISKKCMISLESGHE 205
Query: 243 -----EDNYFFALSKYQKLLEDTLTE-NPDFVQPSFRLNEVQGWIKSGLRDFSISRAS-- 294
E+NY F LS++ K +E+ E P F P+ +N ++ + G++D SISR S
Sbjct: 206 VNWIEEENYMFKLSEFSKTIENWFEEVKPIF--PAIHVNLLRYMLSQGIKDLSISRPSSR 263
Query: 295 VDWGIPVPNDNKQTIYVWFDALLGYISALSEDRDQPS 331
+ WGI VPND QTIYVW DAL Y++ P+
Sbjct: 264 IPWGIEVPNDPSQTIYVWLDALTNYLTVTGYPNVSPN 300
|
|
| TIGR_CMR|APH_1079 APH_1079 "methionyl-tRNA synthetase" [Anaplasma phagocytophilum HZ (taxid:212042)] | Back alignment and assigned GO terms |
|---|
Score = 472 (171.2 bits), Expect = 7.1e-45, P = 7.1e-45
Identities = 98/233 (42%), Positives = 138/233 (59%)
Query: 91 FVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIXXXXXDGG 150
F +TTP+YYVN PH+G YTT+ +D +ARF+RL G V F TGTDEHG+KI G
Sbjct: 6 FCVTTPIYYVNDVPHIGHFYTTLISDVLARFKRLDGDNVKFTTGTDEHGQKIEETARKRG 65
Query: 151 SSPSEHCDVVSQAYKTLWKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEG 210
+ + D VS++++ L D FIRTTE +H+ V + + + G IYK Y G
Sbjct: 66 TPVLQFVDEVSESFRELVHKSGFCADDFIRTTESRHKDAVVALWDRLYSRGQIYKGSYAG 125
Query: 211 LYCVNCEEYKDEKELLENQCCPIHLKPCVARKEDNYFFALSKYQKLLEDTLTENPDFVQP 270
Y V E + E++L++ + P + +E YFF LS++Q+ L +NP FV P
Sbjct: 126 FYSVRDETFYQERDLIDGKA-PTGAE-VTWLEEPGYFFKLSEWQEALLQLYQDNPRFVVP 183
Query: 271 SFRLNEVQGWIKSGLRDFSISR--ASVDWGIPVPNDNKQTIYVWFDALLGYIS 321
+L+EV ++KSGLRD S+SR A + WGI VP D + IYVW DAL Y++
Sbjct: 184 EGKLSEVISFVKSGLRDLSVSRSKAHLSWGIGVPGDPEHLIYVWVDALSNYLA 236
|
|
| GENEDB_PFALCIPARUM|PF10_0340 PF10_0340 "methionine --tRNA ligase, putative" [Plasmodium falciparum (taxid:5833)] | Back alignment and assigned GO terms |
|---|
Score = 479 (173.7 bits), Expect = 9.2e-45, P = 9.2e-45
Identities = 101/257 (39%), Positives = 138/257 (53%)
Query: 89 DPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIXXXXXD 148
+ F +TT + YVN PH+G AY + ADAIAR+ +++G+ F TG DEHG KI
Sbjct: 223 ETFYITTAINYVNGDPHIGHAYEIVLADAIARYHKIIGRDTFFTTGADEHGLKIANQAAK 282
Query: 149 GGSSPSEHCDVVSQAYKTLWKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADY 208
+P E CD ++ L K L + D ++RTT H+ I +E + NGDIY +Y
Sbjct: 283 NNMTPKELCDKNVLKFQNLNKLLYVEDDYYVRTTRDSHKKIAQEVWDKCEKNGDIYLGEY 342
Query: 209 EGLYCVNCEEYKDEKEL-LENQCCPIHLKPCVARKEDNYFFALSKYQKLLEDTLTENPDF 267
EG Y V E Y E E L N P++ KE +YFF +SKYQ L + + NPD+
Sbjct: 343 EGWYNVREETYVPENEAKLMNYIDPLNNIKLEKMKEPSYFFKMSKYQDKLIEYIQSNPDY 402
Query: 268 VQPSFRLNEVQGWIKSGLRDFSISRASVDWGIPVPNDNKQTIYVWFDALLGYISALSEDR 327
+QP + NE+ +K L D S SR WGI VPND K +YVW DAL+ Y S+ D
Sbjct: 403 IQPEQKRNEILQRLKEPLADLSCSRTKFTWGIQVPNDPKHVMYVWMDALINYYSSCFIDE 462
Query: 328 DQPSLRTAVSSGWPASL 344
+ WPA++
Sbjct: 463 GKKKY-------WPANV 472
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|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 4th Layer | 6.1.1.10 | LOW CONFIDENCE prediction! |
| 3rd Layer | 6.1.1 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | gw1.X.2264.1 | hypothetical protein (594 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | eugene3.00002342 | methionyl-trna formyltransferase (EC-2.1.2.9) (356 aa) | • | • | 0.977 | ||||||
 | MS3 | SubName- Full=Putative uncharacterized protein; (766 aa) | • | • | 0.911 | ||||||
 | MS1 | SubName- Full=Putative uncharacterized protein; (766 aa) | • | • | 0.911 | ||||||
 | MS2 | SubName- Full=Putative uncharacterized protein; (766 aa) | • | • | 0.911 | ||||||
 | grail3.17125000101 | annotation not avaliable (190 aa) | • | 0.899 | |||||||
 | fgenesh4_pg.C_LG_III001784 | methionine gamma-lyase (EC-4.4.1.11) (417 aa) | • | 0.899 | |||||||
 | eugene3.14420001 | methionine gamma-lyase (EC-4.4.1.11) (420 aa) | • | 0.899 | |||||||
 | MMT | methionine s-methyltransferase (EC-2.1.1.12) (1095 aa) | • | 0.899 | |||||||
 | eugene3.00031777 | methionine gamma-lyase (EC-4.4.1.11) (417 aa) | • | 0.899 | |||||||
 | estExt_Genewise1_v1.C_LG_I8346 | SubName- Full=Putative uncharacterized protein; (455 aa) | • | 0.899 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 345 | |||
| PLN02224 | 616 | PLN02224, PLN02224, methionine-tRNA ligase | 1e-174 | |
| PRK11893 | 511 | PRK11893, PRK11893, methionyl-tRNA synthetase; Rev | 1e-138 | |
| PRK12267 | 648 | PRK12267, PRK12267, methionyl-tRNA synthetase; Rev | 1e-123 | |
| cd00814 | 319 | cd00814, MetRS_core, catalytic core domain of meth | 1e-110 | |
| COG0143 | 558 | COG0143, MetG, Methionyl-tRNA synthetase [Translat | 1e-105 | |
| pfam09334 | 388 | pfam09334, tRNA-synt_1g, tRNA synthetases class I | 1e-101 | |
| TIGR00398 | 530 | TIGR00398, metG, methionyl-tRNA synthetase | 2e-92 | |
| PRK12268 | 556 | PRK12268, PRK12268, methionyl-tRNA synthetase; Rev | 2e-63 | |
| PRK00133 | 673 | PRK00133, metG, methionyl-tRNA synthetase; Reviewe | 7e-44 | |
| cd00668 | 312 | cd00668, Ile_Leu_Val_MetRS_core, catalytic core do | 3e-39 | |
| PLN02610 | 801 | PLN02610, PLN02610, probable methionyl-tRNA synthe | 1e-30 | |
| cd00817 | 382 | cd00817, ValRS_core, catalytic core domain of valy | 1e-12 | |
| cd00812 | 314 | cd00812, LeuRS_core, catalytic core domain of leuc | 3e-11 | |
| PRK13208 | 800 | PRK13208, valS, valyl-tRNA synthetase; Reviewed | 1e-10 | |
| cd00802 | 143 | cd00802, class_I_aaRS_core, catalytic core domain | 2e-10 | |
| pfam00133 | 606 | pfam00133, tRNA-synt_1, tRNA synthetases class I ( | 5e-09 | |
| COG0495 | 814 | COG0495, LeuS, Leucyl-tRNA synthetase [Translation | 1e-08 | |
| COG0525 | 877 | COG0525, ValS, Valyl-tRNA synthetase [Translation, | 5e-08 | |
| TIGR00422 | 861 | TIGR00422, valS, valyl-tRNA synthetase | 2e-07 | |
| cd00818 | 338 | cd00818, IleRS_core, catalytic core domain of isol | 1e-06 | |
| TIGR00435 | 464 | TIGR00435, cysS, cysteinyl-tRNA synthetase | 1e-05 | |
| COG0215 | 464 | COG0215, CysS, Cysteinyl-tRNA synthetase [Translat | 2e-05 | |
| pfam01406 | 301 | pfam01406, tRNA-synt_1e, tRNA synthetases class I | 3e-05 | |
| TIGR00396 | 842 | TIGR00396, leuS_bact, leucyl-tRNA synthetase, euba | 9e-05 | |
| PRK12300 | 897 | PRK12300, leuS, leucyl-tRNA synthetase; Reviewed | 2e-04 | |
| PLN02843 | 974 | PLN02843, PLN02843, isoleucyl-tRNA synthetase | 4e-04 | |
| PLN02943 | 958 | PLN02943, PLN02943, aminoacyl-tRNA ligase | 0.001 | |
| COG0060 | 933 | COG0060, IleS, Isoleucyl-tRNA synthetase [Translat | 0.001 | |
| TIGR00392 | 861 | TIGR00392, ileS, isoleucyl-tRNA synthetase | 0.001 | |
| cd00672 | 213 | cd00672, CysRS_core, catalytic core domain of cyst | 0.002 | |
| TIGR00395 | 938 | TIGR00395, leuS_arch, leucyl-tRNA synthetase, arch | 0.003 | |
| PTZ00419 | 995 | PTZ00419, PTZ00419, valyl-tRNA synthetase-like pro | 0.004 |
| >gnl|CDD|177869 PLN02224, PLN02224, methionine-tRNA ligase | Back alignment and domain information |
|---|
Score = 498 bits (1282), Expect = e-174
Identities = 241/326 (73%), Positives = 273/326 (83%), Gaps = 11/326 (3%)
Query: 28 MAARINYSIQNSLWLL----NPLHSKATTHFRNRLKFRQNL-----FSLSKGAVFCSYAT 78
MAARIN S+ N+L L PL++K + RN +F + L FS K A++C+ +
Sbjct: 1 MAARINTSLHNALSFLKAFNTPLNTKPFSFCRNCFRFSKKLPYYSQFSSGKRALYCT--S 58
Query: 79 NTDKSGTEPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEH 138
++ +S + AD FVLTTPLYYVNAPPHMGSAYTTIAAD+IARFQRLLGKKVIFITGTDEH
Sbjct: 59 SSQESTVDEADTFVLTTPLYYVNAPPHMGSAYTTIAADSIARFQRLLGKKVIFITGTDEH 118
Query: 139 GEKIAAAAADGGSSPSEHCDVVSQAYKTLWKDLDIAYDKFIRTTEPKHEAIVKEFYSSVL 198
GEKIA +AA G +P EHCD++SQ+Y+TLWKDLDIAYDKFIRTT+PKHEAIVKEFY+ V
Sbjct: 119 GEKIATSAAANGRNPPEHCDIISQSYRTLWKDLDIAYDKFIRTTDPKHEAIVKEFYARVF 178
Query: 199 ANGDIYKADYEGLYCVNCEEYKDEKELLENQCCPIHLKPCVARKEDNYFFALSKYQKLLE 258
ANGDIY+ADYEGLYCVNCEEYKDEKELLEN CCP+H PCVARKEDNYFFALSKYQK LE
Sbjct: 179 ANGDIYRADYEGLYCVNCEEYKDEKELLENNCCPVHQMPCVARKEDNYFFALSKYQKPLE 238
Query: 259 DTLTENPDFVQPSFRLNEVQGWIKSGLRDFSISRASVDWGIPVPNDNKQTIYVWFDALLG 318
D L +NP FVQPS+RLNEVQ WIKSGLRDFSISRA VDWGIPVP+D+KQTIYVWFDALLG
Sbjct: 239 DILAQNPRFVQPSYRLNEVQSWIKSGLRDFSISRALVDWGIPVPDDDKQTIYVWFDALLG 298
Query: 319 YISALSEDRDQPSLRTAVSSGWPASL 344
YISAL+ED Q +L TAVS GWPASL
Sbjct: 299 YISALTEDNKQQNLETAVSFGWPASL 324
|
Length = 616 |
| >gnl|CDD|237012 PRK11893, PRK11893, methionyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 402 bits (1035), Expect = e-138
Identities = 135/256 (52%), Positives = 171/256 (66%), Gaps = 1/256 (0%)
Query: 90 PFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADG 149
F +TTP+YY N PH+G AYTT+AAD +ARF+RL G V F+TGTDEHG+KI A +
Sbjct: 2 KFYITTPIYYPNGKPHIGHAYTTLAADVLARFKRLRGYDVFFLTGTDEHGQKIQRKAEEA 61
Query: 150 GSSPSEHCDVVSQAYKTLWKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADYE 209
G SP E D S A+K LW+ L+I+YD FIRTT+P+H+ V+E + +LANGDIY YE
Sbjct: 62 GISPQELADRNSAAFKRLWEALNISYDDFIRTTDPRHKEAVQEIFQRLLANGDIYLGKYE 121
Query: 210 GLYCVNCEEYKDEKELLE-NQCCPIHLKPCVARKEDNYFFALSKYQKLLEDTLTENPDFV 268
G YCV CEE+ E EL+E CP P +E++YFF LSKYQ L + NPDF+
Sbjct: 122 GWYCVRCEEFYTESELIEDGYRCPPTGAPVEWVEEESYFFRLSKYQDKLLELYEANPDFI 181
Query: 269 QPSFRLNEVQGWIKSGLRDFSISRASVDWGIPVPNDNKQTIYVWFDALLGYISALSEDRD 328
QP+ R NEV ++KSGL+D SISR + DWGIPVP D K IYVWFDAL Y++AL D
Sbjct: 182 QPASRRNEVISFVKSGLKDLSISRTNFDWGIPVPGDPKHVIYVWFDALTNYLTALGYPDD 241
Query: 329 QPSLRTAVSSGWPASL 344
+ L + WPA +
Sbjct: 242 EELLAELFNKYWPADV 257
|
Length = 511 |
| >gnl|CDD|237028 PRK12267, PRK12267, methionyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 367 bits (944), Expect = e-123
Identities = 126/236 (53%), Positives = 163/236 (69%), Gaps = 1/236 (0%)
Query: 89 DPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAAD 148
F +TTP+YY N PH+G AYTTIAADA+AR++RL G V F+TGTDEHG+KI AA
Sbjct: 4 KTFYITTPIYYPNGKPHIGHAYTTIAADALARYKRLQGYDVFFLTGTDEHGQKIQQAAEK 63
Query: 149 GGSSPSEHCDVVSQAYKTLWKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADY 208
G +P E+ D +S +K LWK LDI+YDKFIRTT+ +H+ +V++ + + GDIYK +Y
Sbjct: 64 AGKTPQEYVDEISAGFKELWKKLDISYDKFIRTTDERHKKVVQKIFEKLYEQGDIYKGEY 123
Query: 209 EGLYCVNCEEYKDEKELLENQCCPIHLKPCVARKEDNYFFALSKYQKLLEDTLTENPDFV 268
EG YCV+CE + E +L++ CP + KE++YFF +SKYQ L + ENPDF+
Sbjct: 124 EGWYCVSCETFFTESQLVDGGKCPDCGREVELVKEESYFFRMSKYQDRLLEYYEENPDFI 183
Query: 269 QPSFRLNEV-QGWIKSGLRDFSISRASVDWGIPVPNDNKQTIYVWFDALLGYISAL 323
QP R NE+ +IK GL D SISR S DWGIPVP D K +YVW DALL YI+AL
Sbjct: 184 QPESRKNEMINNFIKPGLEDLSISRTSFDWGIPVPFDPKHVVYVWIDALLNYITAL 239
|
Length = 648 |
| >gnl|CDD|173907 cd00814, MetRS_core, catalytic core domain of methioninyl-tRNA synthetases | Back alignment and domain information |
|---|
Score = 324 bits (833), Expect = e-110
Identities = 118/254 (46%), Positives = 156/254 (61%), Gaps = 17/254 (6%)
Query: 90 PFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADG 149
++TT L YVN PH+G Y T+ AD AR+QRL G V+F+TGTDEHG KI A +
Sbjct: 1 KVLITTALPYVNGVPHLGHLYGTVLADVFARYQRLRGYDVLFVTGTDEHGTKIEQKAEEE 60
Query: 150 GSSPSEHCDVVSQAYKTLWKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADYE 209
G +P E CD + +K L+K L+I++D FIRTT P+H+ IV+EF+ + NG IY+ +YE
Sbjct: 61 GVTPQELCDKYHEIFKDLFKWLNISFDYFIRTTSPRHKEIVQEFFKKLYENGYIYEGEYE 120
Query: 210 GLYCVNCEEYKDEKELLENQCCPIHLKPCVARKEDNYFFALSKYQKLLEDTLTENPDFVQ 269
GLYCV+CE + E R+E++YFF LSK+Q L + L +NPDF+
Sbjct: 121 GLYCVSCERFLPEW-----------------REEEHYFFRLSKFQDRLLEWLEKNPDFIW 163
Query: 270 PSFRLNEVQGWIKSGLRDFSISRASVDWGIPVPNDNKQTIYVWFDALLGYISALSEDRDQ 329
P NEV W+K GL+D SI+R DWGIPVP D + IYVWFDAL+GYISA ++
Sbjct: 164 PENARNEVLSWLKEGLKDLSITRDLFDWGIPVPLDPGKVIYVWFDALIGYISATGYYNEE 223
Query: 330 PSLRTAVSSGWPAS 343
GWP
Sbjct: 224 WGNSWWWKDGWPEL 237
|
Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function. Length = 319 |
| >gnl|CDD|223221 COG0143, MetG, Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 319 bits (819), Expect = e-105
Identities = 118/269 (43%), Positives = 160/269 (59%), Gaps = 28/269 (10%)
Query: 85 TEPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAA 144
+ ++TT L Y N PPH+G YT +AAD AR+ RL G +V F+TGTDEHG KI
Sbjct: 1 MKMMKKILVTTALPYPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDEHGTKIEL 60
Query: 145 AAADGGSSPSEHCDVVSQAYKTLWKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIY 204
A G +P E D + +K L+K L+I++D FIRTT P+H+ +V+EF+ + NGDIY
Sbjct: 61 KAEKEGITPQELVDKNHEEFKELFKALNISFDNFIRTTSPEHKELVQEFFLKLYENGDIY 120
Query: 205 KADYEGLYCVNCEEYKDEKELLE------------NQC-------CPIHLK--------- 236
+YEGLYCV+CE + ++ + +QC P L
Sbjct: 121 LREYEGLYCVSCERFLPDRYVEGTCPKCGGEDARGDQCENCGRTLDPTELINPVCVISGA 180
Query: 237 PCVARKEDNYFFALSKYQKLLEDTLTENPDFVQPSFRLNEVQGWIKSGLRDFSISRASVD 296
R+E++YFF LSK+Q L + NPDF+ P+ R NEV ++K GL+D SI+R +D
Sbjct: 181 TPEVREEEHYFFRLSKFQDKLLEWYESNPDFIWPANRRNEVLNFLKEGLKDLSITRTDLD 240
Query: 297 WGIPVPNDNKQTIYVWFDALLGYISALSE 325
WGIPVP D + IYVWFDAL+GYISAL E
Sbjct: 241 WGIPVPGDPGKVIYVWFDALIGYISALGE 269
|
Length = 558 |
| >gnl|CDD|220185 pfam09334, tRNA-synt_1g, tRNA synthetases class I (M) | Back alignment and domain information |
|---|
Score = 303 bits (778), Expect = e-101
Identities = 114/271 (42%), Positives = 155/271 (57%), Gaps = 32/271 (11%)
Query: 91 FVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGG 150
F++TT L YVN PPH+G YTTI AD AR+ RL G V+F+TGTDEHG KI AA G
Sbjct: 1 FLITTALPYVNGPPHIGHLYTTIPADVYARYLRLRGYDVLFVTGTDEHGTKIELAAEKEG 60
Query: 151 SSPSEHCDVVSQAYKTLWKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEG 210
+P E D + +K L+K +I++D FIRTT +H+ +V+EF+ + GDIY+ +YEG
Sbjct: 61 VTPQELVDRYHEEFKELFKKFNISFDDFIRTTSERHKELVQEFFLKLYEKGDIYEGEYEG 120
Query: 211 LYCVNCEEYKDEKEL----------------------------LENQCCPIHLKPCVARK 242
YCV+ E + ++ + L N I ++
Sbjct: 121 WYCVSDERFLPDRYVEGTCPYCGSEDARGDQCEVCGRPLEPTELINPRSAISGSTPELKE 180
Query: 243 EDNYFFALSKYQKLLEDTLTENPDFVQPSFRLNE-VQGWIKSGLRDFSISRASVDWGIPV 301
E++YFF LSK+Q L + + ENPD +P +NE V W+K GL+D SI+R +DWGIPV
Sbjct: 181 EEHYFFRLSKFQDKLLEWIKENPD--EPPSNVNEVVLSWLKEGLKDLSITR-DLDWGIPV 237
Query: 302 PNDNKQTIYVWFDALLGYISALSEDRDQPSL 332
P D + IYVWFDAL+GYISA P
Sbjct: 238 PGDPGKVIYVWFDALIGYISATKYLSGNPEK 268
|
This family includes methionyl tRNA synthetases. Length = 388 |
| >gnl|CDD|232957 TIGR00398, metG, methionyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 285 bits (731), Expect = 2e-92
Identities = 104/267 (38%), Positives = 152/267 (56%), Gaps = 29/267 (10%)
Query: 91 FVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGG 150
++TT L Y N PH+G AYTTI AD AR++RL G +V+F+ GTDEHG KI A G
Sbjct: 1 ILITTALPYANGKPHLGHAYTTILADVYARYKRLRGYEVLFVCGTDEHGTKIELKAEQEG 60
Query: 151 SSPSEHCDVVSQAYKTLWKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEG 210
+P E D + +K WK L+I++D+FIRTT+ +H+ IV++ + + NG IY+ + +
Sbjct: 61 LTPKELVDKYHEEFKDDWKWLNISFDRFIRTTDEEHKEIVQKIFQKLKENGYIYEKEIKQ 120
Query: 211 LYCVNCEEYK------------DEKELLENQC--CPIHLKPC--------------VARK 242
LYC CE + ++ + C C HL+P R
Sbjct: 121 LYCPECEMFLPDRYVEGTCPKCGSEDARGDHCEVCGRHLEPTELINPRCKICGAKPELRD 180
Query: 243 EDNYFFALSKYQKLLEDTLTENPDFVQPSFRLNEV-QGWIKSGLRDFSISRASVDWGIPV 301
++YFF LS ++K LE+ + +NP+ P+ + Q W+K GL+D +I+R V WGIPV
Sbjct: 181 SEHYFFRLSAFEKELEEWIRKNPESGSPASNVKNKAQNWLKGGLKDLAITRDLVYWGIPV 240
Query: 302 PNDNKQTIYVWFDALLGYISALSEDRD 328
PND + +YVWFDAL+GYIS+L
Sbjct: 241 PNDPNKVVYVWFDALIGYISSLGILSG 267
|
The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to This model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (small) subunit; this model does not include the C-terminal region corresponding to the beta chain [Protein synthesis, tRNA aminoacylation]. Length = 530 |
| >gnl|CDD|237029 PRK12268, PRK12268, methionyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 210 bits (538), Expect = 2e-63
Identities = 88/267 (32%), Positives = 128/267 (47%), Gaps = 36/267 (13%)
Query: 91 FVLTTPLYYVNAPPHMGSAYTT-IAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADG 149
++T+ Y N P H+G + + AD AR+QRL G +V+F++G+DEHG I AA
Sbjct: 5 ILITSAWPYANGPLHLGHLAGSGLPADVFARYQRLKGNEVLFVSGSDEHGTPIELAAKKE 64
Query: 150 GSSPSEHCDVVSQAYKTLWKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADYE 209
G +P E D + +K +K L I+YD F RTT P H +V+EF+ + NG IYK E
Sbjct: 65 GVTPQELADKYHEEHKEDFKKLGISYDLFTRTTSPNHHEVVQEFFLKLYENGYIYKKTIE 124
Query: 210 GLYCVNCE-------------------EYKDEKELLENQCCPIHLK---------PCVAR 241
YC + D+ + P L R
Sbjct: 125 QAYCPSDGRFLPDRYVEGTCPYCGYEGARGDQCDNCGALLDPTDLINPRSKISGSTPEFR 184
Query: 242 KEDNYFFALSKYQKLLEDTLTENPDFVQPSFRLNEVQGWIKSGLRDFSISRASVDWGIPV 301
+ +++F L + + L + + D P LN W+K GL+ +I+R +DWGIPV
Sbjct: 185 ETEHFFLDLPAFAERLRAWIESSGD--WPPNVLNFTLNWLKEGLKPRAITR-DLDWGIPV 241
Query: 302 P---NDNKQTIYVWFDALLGYISALSE 325
P + K YVWFDA++GYISA E
Sbjct: 242 PWPGFEGK-VFYVWFDAVIGYISASKE 267
|
Length = 556 |
| >gnl|CDD|234655 PRK00133, metG, methionyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 159 bits (405), Expect = 7e-44
Identities = 69/272 (25%), Positives = 119/272 (43%), Gaps = 46/272 (16%)
Query: 90 PFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADG 149
++T L Y N P H+G I AD R+QR+ G +V+F+ D HG I A
Sbjct: 3 KILVTCALPYANGPIHLGHLVEYIQADIWVRYQRMRGHEVLFVCADDAHGTPIMLKAEKE 62
Query: 150 GSSPSEHCDVVSQAYKTLWKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADYE 209
G +P E +K + I++D + T ++ + +E Y + NG IY+ E
Sbjct: 63 GITPEELIARYHAEHKRDFAGFGISFDNYGSTHSEENRELAQEIYLKLKENGYIYEKTIE 122
Query: 210 GLYCVNC-------------------EEYKDEKELLENQC--CPIHLKP----------C 238
LY ++Y D C C P
Sbjct: 123 QLYDPEKGMFLPDRFVKGTCPKCGAEDQYGD-------NCEVCGATYSPTELINPKSAIS 175
Query: 239 ----VARKEDNYFFALSKYQKLLEDTLTENPDFVQPSFRLNEVQGWIKSGLRDFSISRAS 294
V ++ +++FF L ++++ L++ +T + + +QP+ N+++ W++ GL+D+ ISR
Sbjct: 176 GATPVLKESEHFFFKLPRFEEFLKEWITRSGE-LQPNVA-NKMKEWLEEGLQDWDISR-D 232
Query: 295 VDW-GIPVPNDNKQTIYVWFDALLGYISALSE 325
+ G +P + YVW DA +GYIS+
Sbjct: 233 APYFGFEIPGAPGKVFYVWLDAPIGYISSTKN 264
|
Length = 673 |
| >gnl|CDD|185674 cd00668, Ile_Leu_Val_MetRS_core, catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases | Back alignment and domain information |
|---|
Score = 140 bits (355), Expect = 3e-39
Identities = 70/249 (28%), Positives = 108/249 (43%), Gaps = 52/249 (20%)
Query: 90 PFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADG 149
F +TTP Y N H+G A T I AD IAR++R+ G +V F+ G D HG I A
Sbjct: 1 KFYVTTPPPYANGSLHLGHALTHIIADFIARYKRMRGYEVPFLPGWDTHGLPIELKAERK 60
Query: 150 G-------------SSPSEHCDVVSQAYKTLWKDLDIAYD--KFIRTTEPKHEAIVKEFY 194
G P E + +S +K ++ L I+YD TTEP++ V+ +
Sbjct: 61 GGRKKKTIWIEEFREDPKEFVEEMSGEHKEDFRRLGISYDWSDEYITTEPEYSKAVELIF 120
Query: 195 SSVLANGDIYKADYEGLYCVNCEEYKDEKELLENQCCPIHLKPCVARKEDNYFFALSKYQ 254
S + G IY+ + R + +FF + K++
Sbjct: 121 SRLYEKGLIYRGTHPV------------------------------RITEQWFFDMPKFK 150
Query: 255 KLLEDTLTENPDFVQPSFRLNEVQGWIKSGLRDFSISRASVDWGIPVPNDNKQTIYVWFD 314
+ L L V + N ++ W++S L D++ISR WG P+P D VWFD
Sbjct: 151 EKLLKALRRGK-IVPEHVK-NRMEAWLESLL-DWAISRQRY-WGTPLPED---VFDVWFD 203
Query: 315 ALLGYISAL 323
+ +G + +L
Sbjct: 204 SGIGPLGSL 212
|
Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function. Length = 312 |
| >gnl|CDD|215329 PLN02610, PLN02610, probable methionyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 122 bits (308), Expect = 1e-30
Identities = 75/266 (28%), Positives = 122/266 (45%), Gaps = 41/266 (15%)
Query: 93 LTTPLYYVNAPPHMGSAY-TTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGS 151
+T+ L YVN PH+G+ ++AD AR+ RL G I+I GTDE+G A +
Sbjct: 21 ITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNAIYICGTDEYGTATETKALEENC 80
Query: 152 SPSEHCDVVSQAYKTLWKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGL 211
+P E CD +K ++ DI++DKF RT+ P+ I + + ++ N + + + L
Sbjct: 81 TPKEICDKYHAIHKEVYDWFDISFDKFGRTSTPQQTEICQAIFKKLMENNWLSENTMQQL 140
Query: 212 YCVNCEE-----------------YKDEK--------------ELLENQCCPIHLKPCVA 240
YC C++ Y + EL++ +C P
Sbjct: 141 YCDTCQKFLADRLVEGTCPTEGCNYDSARGDQCEKCGKLLNPTELIDPKCKVCKNTP-RI 199
Query: 241 RKEDNYFFALSKYQKLLEDTLTENPDFVQPSFRLNEVQ---GWIKSGLRDFSISRASVDW 297
R D+ F L + L + + E V + N +Q W++ GL+ I+R + W
Sbjct: 200 RDTDHLFLELPLLKDKLVEYINETS--VAGGWSQNAIQTTNAWLRDGLKPRCITR-DLKW 256
Query: 298 GIPVPND--NKQTIYVWFDALLGYIS 321
G+PVP + + YVWFDA +GY+S
Sbjct: 257 GVPVPLEKYKDKVFYVWFDAPIGYVS 282
|
Length = 801 |
| >gnl|CDD|185677 cd00817, ValRS_core, catalytic core domain of valyl-tRNA synthetases | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 1e-12
Identities = 66/297 (22%), Positives = 100/297 (33%), Gaps = 55/297 (18%)
Query: 89 DPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHG-------EK 141
FV+ TP V HMG A D IAR++R+ G V++ GTD G EK
Sbjct: 1 PVFVIDTPPPNVTGSLHMGHALNNTIQDIIARYKRMKGYNVLWPPGTDHAGIATQVVVEK 60
Query: 142 IAAAAADGGSSPS-----EHCDVVSQAY----KTLWKDLDIAYD--KFIRTTEPKHEAIV 190
E C + + K L + D + T +P V
Sbjct: 61 KLGIEGKTRHDLGREEFLEKCWEWKEESGGKIREQLKRLGASVDWSREYFTMDPGLSRAV 120
Query: 191 KEFYSSVLANGDIYKADYEGLYCVNCEEYKDEKELLENQCCPIHLKPCVARKEDNYFFAL 250
+E + + G IY+ + +C + E+ I K +
Sbjct: 121 QEAFVRLYEKGLIYRDNRLVNWCPKLRTAISDIEVCSRSGDVIEPLL----KPQWFVKVK 176
Query: 251 SKYQKLLEDTLTENPDFVQPSFRLNEVQGWIKSGLRDFSISRASVDWGIPVPNDNKQTIY 310
+K LE + FV P + W+++ +RD+ ISR WG +P
Sbjct: 177 DLAKKALEAVKEGDIKFV-PERMEKRYENWLEN-IRDWCISRQLW-WGHRIP-------- 225
Query: 311 VWFDALLGY-ISALSED--------------------RDQPSLRTAVSSG-WPASLT 345
W+ G+ + A ED +D+ L T SS WP S
Sbjct: 226 AWYCKDGGHWVVAREEDEAIDKAAPEACVPCGGEELKQDEDVLDTWFSSSLWPFSTL 282
|
Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. Length = 382 |
| >gnl|CDD|173906 cd00812, LeuRS_core, catalytic core domain of leucyl-tRNA synthetases | Back alignment and domain information |
|---|
Score = 63.4 bits (155), Expect = 3e-11
Identities = 46/216 (21%), Positives = 74/216 (34%), Gaps = 41/216 (18%)
Query: 91 FVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGG 150
F + Y + H+G T D IAR++R+ G V+F G D G AA G
Sbjct: 2 FYILVMFPYPSGALHVGHVRTYTIGDIIARYKRMQGYNVLFPMGFDAFGLPAENAAIKIG 61
Query: 151 SSPSEHCDVVSQAYKTLWKDLDIAYD--KFIRTTEPKHEAIVKEFYSSVLANGDIYKADY 208
P + + + K K + +YD + T +P++ + + + G YK +
Sbjct: 62 RDPEDWTEYNIKKMKEQLKRMGFSYDWRREFTTCDPEYYKFTQWLFLKLYEKGLAYKKEA 121
Query: 209 EGLYCVNCEEYKDEKELLENQCCPIHLKPCVARKEDNYFFALS--KYQKLLEDTLTENPD 266
+C D +F S ++++ L L E D
Sbjct: 122 PVNWCKLL---------------------------DQWFLKYSETEWKEKLLKDL-EKLD 153
Query: 267 FVQPSFRLNEVQGWIKSGLRDFSISRASVDWGIPVP 302
R + WI S R WG P+P
Sbjct: 154 GWPEEVR-AMQENWI-----GCSRQRY---WGTPIP 180
|
Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. Length = 314 |
| >gnl|CDD|237306 PRK13208, valS, valyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 62.1 bits (152), Expect = 1e-10
Identities = 41/163 (25%), Positives = 70/163 (42%), Gaps = 23/163 (14%)
Query: 84 GTEPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHG---- 139
E + + TP V+ H+G ++ D IAR+QR+ G V F G D++G
Sbjct: 33 PDERKPVYSIDTPPPTVSGSLHIGHVFSYTHTDFIARYQRMRGYNVFFPQGWDDNGLPTE 92
Query: 140 ---EKIAAAAADGGSSP------SEHCDVVSQAYKTLWKDLDIAYD--KFIRTTEPKHEA 188
EK D S E D + ++ LW+ L ++ D +T P++
Sbjct: 93 RKVEKYYGIRKDDISREEFIELCRELTDEDEKKFRELWRRLGLSVDWSLEYQTISPEYRR 152
Query: 189 IVKEFYSSVLANGDIYKADYEGLYCVNCE--------EYKDEK 223
I ++ + + G IY+A+ L+C CE EY++ +
Sbjct: 153 ISQKSFLDLYKKGLIYRAEAPVLWCPRCETAIAQAEVEYRERE 195
|
Length = 800 |
| >gnl|CDD|173901 cd00802, class_I_aaRS_core, catalytic core domain of class I amino acyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 2e-10
Identities = 19/75 (25%), Positives = 27/75 (36%)
Query: 94 TTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSP 153
T N H+G T + D +A+ R LG KV I D+ G I A G +
Sbjct: 2 TFSGITPNGYLHIGHLRTIVTFDFLAQAYRKLGYKVRCIALIDDAGGLIGDPANKKGENA 61
Query: 154 SEHCDVVSQAYKTLW 168
+ + K
Sbjct: 62 KAFVERWIERIKEDV 76
|
Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Length = 143 |
| >gnl|CDD|215739 pfam00133, tRNA-synt_1, tRNA synthetases class I (I, L, M and V) | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 5e-09
Identities = 40/213 (18%), Positives = 69/213 (32%), Gaps = 37/213 (17%)
Query: 85 TEPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAA 144
+ F + H+G A D + R++R+ G V+++ G D HG
Sbjct: 19 GKGKPSFTIHDGPPNATGLLHIGHALNKTLKDIVIRYKRMQGFDVLWVPGWDHHGLPTEQ 78
Query: 145 A-----AADGGSSPS------------EHCDVVSQAYKTLWKDLDIAYDKFIR---TTEP 184
G E + ++ +K L ++ D + R T +P
Sbjct: 79 KVEKKLGIKGKKDRHKLGREKFREKCREWKMEYADEIRSQFKRLGVSGD-WDREYFTLDP 137
Query: 185 KHEAIVKEFYSSVLANGDIYKADYEGLYCVNCE--------EYKDEKELLENQCCPIHLK 236
EA V + + G IY+ + EYKD K IH+
Sbjct: 138 GLEAAVWRVFVRLHDKGLIYRGKKPVNWSPALNTALSEAEVEYKDVKGPS------IHVA 191
Query: 237 PCVARKEDNYF-FALSKYQKLLEDT-LTENPDF 267
+A + + L +T + NP+F
Sbjct: 192 FPLADGKGASLVIWTTTPWTLPGNTAVAVNPEF 224
|
Other tRNA synthetase sub-families are too dissimilar to be included. Length = 606 |
| >gnl|CDD|223569 COG0495, LeuS, Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 56.1 bits (136), Expect = 1e-08
Identities = 30/145 (20%), Positives = 54/145 (37%), Gaps = 7/145 (4%)
Query: 76 YATNTDKSGTEPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGT 135
+ + D E F + Y + H+G D IAR++R+ G V+ G
Sbjct: 24 FEADEDSDKPEK---FYVLVMFPYPSGALHVGHVRNYTIGDVIARYKRMQGYNVLHPMGW 80
Query: 136 DEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKDLDIAYD---KFIRTTEPKHEAIVKE 192
D G AA G+ P++ K K L + D +F T +P++ ++
Sbjct: 81 DAFGLPAENAAIKIGTDPAKWTYYNIAYMKKQLKSLGFSIDWRREFA-TCDPEYYKWIQW 139
Query: 193 FYSSVLANGDIYKADYEGLYCVNCE 217
+ + G Y+ + +C
Sbjct: 140 QFLKLYEKGLAYRKEAPVNWCPVDG 164
|
Length = 814 |
| >gnl|CDD|223599 COG0525, ValS, Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 5e-08
Identities = 20/57 (35%), Positives = 27/57 (47%)
Query: 83 SGTEPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHG 139
E PF + TP V HMG A D +AR++R+ G V++ GTD G
Sbjct: 27 DPNEDKPPFSIDTPPPNVTGSLHMGHALNYTLQDILARYKRMRGYNVLWPPGTDHAG 83
|
Length = 877 |
| >gnl|CDD|232969 TIGR00422, valS, valyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 2e-07
Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 7/70 (10%)
Query: 83 SGTEPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHG--- 139
G PF + P V H+G A D IAR++R+ G V+++ GTD G
Sbjct: 27 DGNSNKPPFCIDIPPPNVTGSLHIGHALNWSIQDIIARYKRMKGYNVLWLPGTDHAGIAT 86
Query: 140 ----EKIAAA 145
EK A
Sbjct: 87 QVKVEKKLGA 96
|
The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase [Protein synthesis, tRNA aminoacylation]. Length = 861 |
| >gnl|CDD|173909 cd00818, IleRS_core, catalytic core domain of isoleucyl-tRNA synthetases | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 1e-06
Identities = 56/254 (22%), Positives = 86/254 (33%), Gaps = 73/254 (28%)
Query: 99 YVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKI--AAAAADGGSSPS-- 154
Y N PH G A I D I R++ + G V G D HG I G S
Sbjct: 11 YANGLPHYGHALNKILKDIINRYKTMQGYYVPRRPGWDCHGLPIELKVEKELGISGKKDI 70
Query: 155 ---------EHCDVVSQAYKTLWK----------DLDIAYDKFIRTTEPKHEAIVKEFYS 195
C + Y + D + Y +T +P++ V +
Sbjct: 71 EKMGIAEFNAKCREFALRYVDEQEEQFQRLGVWVDWENPY----KTMDPEYMESVWWVFK 126
Query: 196 SVLANGDIYKADYEGLYCVNCEEYKDEKELLENQCCPIHLKPCVARKEDNYFFALSKY-Q 254
+ G +Y+ YK + P + R +F ++K
Sbjct: 127 QLHEKGLLYRG------------YK-----------VVPW-PLIYRATPQWFIRVTKIKD 162
Query: 255 KLLE--DTLTENPDFVQPSFRLNEVQGWIKSGLRDFSISRASVDWGIPVP----NDNKQ- 307
+LLE D + P++V+ F W++ RD+ ISR WG P+P D +
Sbjct: 163 RLLEANDKVNWIPEWVKNRFG-----NWLE-NRRDWCISRQRY-WGTPIPVWYCEDCGEV 215
Query: 308 -------TIYVWFD 314
+ VWFD
Sbjct: 216 LVRRVPDVLDVWFD 229
|
Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. Length = 338 |
| >gnl|CDD|232974 TIGR00435, cysS, cysteinyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 1e-05
Identities = 38/112 (33%), Positives = 51/112 (45%), Gaps = 17/112 (15%)
Query: 105 HMGSAYTTIAADAIARFQRLLGKKVIF---ITGTDEHGEKIAAAAADGGSSPSEHCDVVS 161
H+G A T I D + R+ R LG KV + IT D +KI A + G S E +
Sbjct: 36 HIGHARTAIVFDVLRRYLRYLGYKVQYVQNITDID---DKIIKRARENGESVYEVSERFI 92
Query: 162 QAYKTLWKDLDIAY-DKFIRTTEPKHEAIVKEF--------YSSVLANGDIY 204
+AY K L++ D R TE H + EF Y+ V NGD+Y
Sbjct: 93 EAYFEDMKALNVLPPDLEPRATE--HIDEIIEFIEQLIEKGYAYVSDNGDVY 142
|
This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln) [Protein synthesis, tRNA aminoacylation]. Length = 464 |
| >gnl|CDD|223293 COG0215, CysS, Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 2e-05
Identities = 34/113 (30%), Positives = 49/113 (43%), Gaps = 9/113 (7%)
Query: 104 PHMGSAYTTIAADAIARFQRLLGKKVIF---ITGTDEHGEKIAAAAADGGSSPSEHCDVV 160
H+G A T + D + R+ R LG KV + IT D +KI A + G S E +
Sbjct: 36 AHIGHARTYVVFDVLRRYLRYLGYKVTYVRNITDID---DKIINRAREEGLSIREVAERY 92
Query: 161 SQAYKTLWKDLDIAY-DKFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLY 212
A+ L++ D R TE H + EF ++ G Y AD +Y
Sbjct: 93 IAAFFEDMDALNVLPPDIEPRATE--HIDEIIEFIEKLIEKGYAYVADDGDVY 143
|
Length = 464 |
| >gnl|CDD|216482 pfam01406, tRNA-synt_1e, tRNA synthetases class I (C) catalytic domain | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 3e-05
Identities = 31/108 (28%), Positives = 48/108 (44%), Gaps = 7/108 (6%)
Query: 104 PHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQA 163
H+G A + +A D + R+ + LG V F+ + +KI A G S E A
Sbjct: 23 SHIGHARSAVAFDVLRRYLQALGYDVQFVQNFTDIDDKIIKRAQQQGESFRELAARFITA 82
Query: 164 YKTLWKDLDI-AYDKFIRTTE--PKH----EAIVKEFYSSVLANGDIY 204
Y L++ D R TE + E ++K+ Y+ V NGD+Y
Sbjct: 83 YTKDMDALNVLPPDLEPRVTEHIDEIIEFIERLIKKGYAYVSDNGDVY 130
|
This family includes only cysteinyl tRNA synthetases. Length = 301 |
| >gnl|CDD|232956 TIGR00396, leuS_bact, leucyl-tRNA synthetase, eubacterial and mitochondrial family | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 9e-05
Identities = 38/179 (21%), Positives = 72/179 (40%), Gaps = 13/179 (7%)
Query: 99 YVNAPPHMG--SAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPS-- 154
Y + HMG YT D ++R+ R+ G V+ G D G AA G P+
Sbjct: 39 YPSGALHMGHVRNYT--ITDVLSRYYRMKGYNVLHPIGWDAFGLPAENAAIKRGIHPAKW 96
Query: 155 --EHCDVVSQAYKTLWKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLY 212
E+ + + + L D +D+ I T +P++ + + + G Y + + +
Sbjct: 97 TYENIANMKKQLQALGFSYD--WDREIATCDPEYYKWTQWIFLELFEKGLAYVKEADVNW 154
Query: 213 CVNCEEYKDEKELLENQCCPIHLKPCVARKEDNYFFALSKY-QKLLED--TLTENPDFV 268
C N +++ + P ++ +F ++ Y ++LL D L P+ V
Sbjct: 155 CPNDGTVLANEQVDSDGRSWRGDTPVEKKELKQWFLKITAYAEELLNDLEELDHWPESV 213
|
The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches [Protein synthesis, tRNA aminoacylation]. Length = 842 |
| >gnl|CDD|237049 PRK12300, leuS, leucyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 2e-04
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 5/37 (13%)
Query: 104 PHMGSAYTTIAADAIARFQRLLGKKVIF-----ITGT 135
H+G T D IAR++R+ G V+F +TGT
Sbjct: 1 LHVGHGRTYTIGDVIARYKRMRGYNVLFPMAFHVTGT 37
|
Length = 897 |
| >gnl|CDD|215452 PLN02843, PLN02843, isoleucyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 4e-04
Identities = 22/55 (40%), Positives = 27/55 (49%)
Query: 88 ADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKI 142
+ F L Y N H+G A I D I R+Q L GKKV ++ G D HG I
Sbjct: 31 GESFTLHDGPPYANGDLHIGHALNKILKDFINRYQLLQGKKVHYVPGWDCHGLPI 85
|
Length = 974 |
| >gnl|CDD|215509 PLN02943, PLN02943, aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Score = 40.7 bits (95), Expect = 0.001
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 76 YATNTDKSGTEPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGT 135
+ N D+ G DPFV+ P V HMG A D + R+ R+ G+ ++I GT
Sbjct: 79 FKPNFDRGG----DPFVIPMPPPNVTGSLHMGHAMFVTLEDIMVRYNRMKGRPTLWIPGT 134
Query: 136 DEHG 139
D G
Sbjct: 135 DHAG 138
|
Length = 958 |
| >gnl|CDD|223138 COG0060, IleS, Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.001
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 99 YVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHG 139
Y N H+G A I D I R++ + G V ++ G D HG
Sbjct: 59 YANGNIHIGHALNKILKDIIVRYKTMQGYDVPYVPGWDCHG 99
|
Length = 933 |
| >gnl|CDD|232953 TIGR00392, ileS, isoleucyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.001
Identities = 16/55 (29%), Positives = 22/55 (40%)
Query: 85 TEPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHG 139
+ F+ Y N H+G A I D I R++ + G V G D HG
Sbjct: 32 NKGKPEFIFHDGPPYANGSIHLGHALNKILKDIILRYKTMQGFNVTRKPGWDTHG 86
|
The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms [Protein synthesis, tRNA aminoacylation]. Length = 861 |
| >gnl|CDD|173899 cd00672, CysRS_core, catalytic core domain of cysteinyl tRNA synthetase | Back alignment and domain information |
|---|
Score = 38.7 bits (91), Expect = 0.002
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 7/82 (8%)
Query: 104 PHMGSAYTTIAADAIARFQRLLGKKVIF---ITGTDEHGEKIAAAAADGGSSPSEHCDVV 160
H+G A T + D + R+ LG KV + IT D +KI A + G S E D
Sbjct: 34 AHIGHARTYVVFDVLRRYLEDLGYKVRYVQNITDID---DKIIKRAREEGLSWKEVADYY 90
Query: 161 SQAYKTLWKDLDIAY-DKFIRT 181
++ + K L++ D R
Sbjct: 91 TKEFFEDMKALNVLPPDVVPRV 112
|
Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Length = 213 |
| >gnl|CDD|232955 TIGR00395, leuS_arch, leucyl-tRNA synthetase, archaeal and cytosolic family | Back alignment and domain information |
|---|
Score = 39.0 bits (91), Expect = 0.003
Identities = 39/173 (22%), Positives = 67/173 (38%), Gaps = 31/173 (17%)
Query: 88 ADP-----FVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIF-----ITGTDE 137
ADP F LT Y+N H G T + ARF+R+ GK V+F +TGT
Sbjct: 19 ADPDDREKFFLTMAYPYLNGVMHAGHCRTFTIPEVSARFERMKGKNVLFPLGFHVTGTPI 78
Query: 138 HG--EKIAAAAADGG-----------------SSPSEHCDVVSQAYKTLWKDLDIAYD-- 176
G E I + P + S+ ++ K + + D
Sbjct: 79 LGLAELIKRRDELTIKNYTEVHAIPREELLKFTDPEYIVEYFSREAESACKSMGYSIDWR 138
Query: 177 KFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLYCVNCEEYKDEKELLENQ 229
+ +TT+P ++ ++ + + G I K ++ YC ++ +LL +
Sbjct: 139 RSFKTTDPYYDRFIEWQMNKLKELGLIVKGEHPVRYCPKDGNPVEDHDLLSGE 191
|
The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS [Protein synthesis, tRNA aminoacylation]. Length = 938 |
| >gnl|CDD|240411 PTZ00419, PTZ00419, valyl-tRNA synthetase-like protein; Provisional | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 0.004
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 89 DPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIA 143
FV+ P V H+G A T D++ R+ R+ G + +++ GTD G IA
Sbjct: 60 KKFVIVLPPPNVTGYLHIGHALTGAIQDSLIRYHRMKGDETLWVPGTDHAG--IA 112
|
Length = 995 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 345 | |||
| PLN02224 | 616 | methionine-tRNA ligase | 100.0 | |
| COG0143 | 558 | MetG Methionyl-tRNA synthetase [Translation, ribos | 100.0 | |
| PRK12267 | 648 | methionyl-tRNA synthetase; Reviewed | 100.0 | |
| KOG0436 | 578 | consensus Methionyl-tRNA synthetase [Translation, | 100.0 | |
| PF09334 | 391 | tRNA-synt_1g: tRNA synthetases class I (M); InterP | 100.0 | |
| cd00817 | 382 | ValRS_core catalytic core domain of valyl-tRNA syn | 100.0 | |
| PLN02610 | 801 | probable methionyl-tRNA synthetase | 100.0 | |
| PRK00133 | 673 | metG methionyl-tRNA synthetase; Reviewed | 100.0 | |
| PRK11893 | 511 | methionyl-tRNA synthetase; Reviewed | 100.0 | |
| cd00814 | 319 | MetRS_core catalytic core domain of methioninyl-tR | 100.0 | |
| TIGR00398 | 530 | metG methionyl-tRNA synthetase. The methionyl-tRNA | 100.0 | |
| PRK12268 | 556 | methionyl-tRNA synthetase; Reviewed | 100.0 | |
| cd00818 | 338 | IleRS_core catalytic core domain of isoleucyl-tRNA | 100.0 | |
| PRK13208 | 800 | valS valyl-tRNA synthetase; Reviewed | 100.0 | |
| TIGR00422 | 861 | valS valyl-tRNA synthetase. The valyl-tRNA synthet | 100.0 | |
| PRK14900 | 1052 | valS valyl-tRNA synthetase; Provisional | 100.0 | |
| PRK05729 | 874 | valS valyl-tRNA synthetase; Reviewed | 100.0 | |
| PLN02943 | 958 | aminoacyl-tRNA ligase | 100.0 | |
| cd00668 | 312 | Ile_Leu_Val_MetRS_core catalytic core domain of is | 100.0 | |
| PRK06039 | 975 | ileS isoleucyl-tRNA synthetase; Reviewed | 100.0 | |
| PTZ00419 | 995 | valyl-tRNA synthetase-like protein; Provisional | 100.0 | |
| cd00812 | 314 | LeuRS_core catalytic core domain of leucyl-tRNA sy | 100.0 | |
| COG0525 | 877 | ValS Valyl-tRNA synthetase [Translation, ribosomal | 100.0 | |
| TIGR00392 | 861 | ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA | 100.0 | |
| PLN02381 | 1066 | valyl-tRNA synthetase | 100.0 | |
| PRK05743 | 912 | ileS isoleucyl-tRNA synthetase; Reviewed | 100.0 | |
| PLN02882 | 1159 | aminoacyl-tRNA ligase | 100.0 | |
| TIGR00395 | 938 | leuS_arch leucyl-tRNA synthetase, archaeal and cyt | 100.0 | |
| KOG1247 | 567 | consensus Methionyl-tRNA synthetase [Translation, | 100.0 | |
| PF00133 | 601 | tRNA-synt_1: tRNA synthetases class I (I, L, M and | 100.0 | |
| PTZ00427 | 1205 | isoleucine-tRNA ligase, putative; Provisional | 100.0 | |
| PLN02843 | 974 | isoleucyl-tRNA synthetase | 100.0 | |
| PRK13804 | 961 | ileS isoleucyl-tRNA synthetase; Provisional | 100.0 | |
| COG0060 | 933 | IleS Isoleucyl-tRNA synthetase [Translation, ribos | 100.0 | |
| TIGR00396 | 842 | leuS_bact leucyl-tRNA synthetase, eubacterial and | 100.0 | |
| PLN02563 | 963 | aminoacyl-tRNA ligase | 100.0 | |
| PRK00390 | 805 | leuS leucyl-tRNA synthetase; Validated | 100.0 | |
| COG0495 | 814 | LeuS Leucyl-tRNA synthetase [Translation, ribosoma | 100.0 | |
| PLN02959 | 1084 | aminoacyl-tRNA ligase | 100.0 | |
| KOG0435 | 876 | consensus Leucyl-tRNA synthetase [Translation, rib | 100.0 | |
| PRK12300 | 897 | leuS leucyl-tRNA synthetase; Reviewed | 100.0 | |
| KOG0432 | 995 | consensus Valyl-tRNA synthetase [Translation, ribo | 100.0 | |
| KOG0434 | 1070 | consensus Isoleucyl-tRNA synthetase [Translation, | 99.97 | |
| KOG0433 | 937 | consensus Isoleucyl-tRNA synthetase [Translation, | 99.96 | |
| PTZ00399 | 651 | cysteinyl-tRNA-synthetase; Provisional | 99.94 | |
| PRK01611 | 507 | argS arginyl-tRNA synthetase; Reviewed | 99.93 | |
| cd00671 | 212 | ArgRS_core catalytic core domain of arginyl-tRNA s | 99.92 | |
| TIGR00435 | 465 | cysS cysteinyl-tRNA synthetase. This model finds t | 99.91 | |
| PRK00260 | 463 | cysS cysteinyl-tRNA synthetase; Validated | 99.91 | |
| TIGR03447 | 411 | mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino- | 99.91 | |
| PRK12418 | 384 | cysteinyl-tRNA synthetase; Provisional | 99.91 | |
| PLN02946 | 557 | cysteine-tRNA ligase | 99.9 | |
| PRK14536 | 490 | cysS cysteinyl-tRNA synthetase; Provisional | 99.88 | |
| PRK14535 | 699 | cysS cysteinyl-tRNA synthetase; Provisional | 99.88 | |
| cd00672 | 213 | CysRS_core catalytic core domain of cysteinyl tRNA | 99.86 | |
| PRK14534 | 481 | cysS cysteinyl-tRNA synthetase; Provisional | 99.86 | |
| COG0018 | 577 | ArgS Arginyl-tRNA synthetase [Translation, ribosom | 99.85 | |
| TIGR00456 | 566 | argS arginyl-tRNA synthetase. This model recognize | 99.84 | |
| PRK12451 | 562 | arginyl-tRNA synthetase; Reviewed | 99.83 | |
| PF01406 | 300 | tRNA-synt_1e: tRNA synthetases class I (C) catalyt | 99.82 | |
| PLN02286 | 576 | arginine-tRNA ligase | 99.81 | |
| cd00674 | 353 | LysRS_core_class_I catalytic core domain of class | 99.79 | |
| COG0215 | 464 | CysS Cysteinyl-tRNA synthetase [Translation, ribos | 99.79 | |
| PF00750 | 354 | tRNA-synt_1d: tRNA synthetases class I (R); InterP | 99.71 | |
| cd00802 | 143 | class_I_aaRS_core catalytic core domain of class I | 99.67 | |
| PRK00750 | 510 | lysK lysyl-tRNA synthetase; Reviewed | 99.64 | |
| KOG0437 | 1080 | consensus Leucyl-tRNA synthetase [Translation, rib | 99.63 | |
| KOG2007 | 586 | consensus Cysteinyl-tRNA synthetase [Translation, | 99.56 | |
| TIGR00467 | 515 | lysS_arch lysyl-tRNA synthetase, archaeal and spir | 99.47 | |
| cd09287 | 240 | GluRS_non_core catalytic core domain of non-discri | 99.17 | |
| PRK04156 | 567 | gltX glutamyl-tRNA synthetase; Provisional | 99.03 | |
| KOG4426 | 656 | consensus Arginyl-tRNA synthetase [Translation, ri | 98.97 | |
| TIGR00463 | 560 | gltX_arch glutamyl-tRNA synthetase, archaeal and e | 98.93 | |
| PRK12558 | 445 | glutamyl-tRNA synthetase; Provisional | 98.89 | |
| cd00807 | 238 | GlnRS_core catalytic core domain of glutaminyl-tRN | 98.86 | |
| PLN03233 | 523 | putative glutamate-tRNA ligase; Provisional | 98.84 | |
| PTZ00402 | 601 | glutamyl-tRNA synthetase; Provisional | 98.79 | |
| COG0008 | 472 | GlnS Glutamyl- and glutaminyl-tRNA synthetases [Tr | 98.77 | |
| TIGR03838 | 272 | queuosine_YadB glutamyl-queuosine tRNA(Asp) synthe | 98.77 | |
| PTZ00437 | 574 | glutaminyl-tRNA synthetase; Provisional | 98.75 | |
| PLN02907 | 722 | glutamate-tRNA ligase | 98.75 | |
| PF00749 | 314 | tRNA-synt_1c: tRNA synthetases class I (E and Q), | 98.72 | |
| PRK05710 | 299 | glutamyl-Q tRNA(Asp) synthetase; Reviewed | 98.7 | |
| cd00418 | 230 | GlxRS_core catalytic core domain of glutamyl-tRNA | 98.66 | |
| PRK12410 | 433 | glutamylglutaminyl-tRNA synthetase; Provisional | 98.64 | |
| TIGR00440 | 522 | glnS glutaminyl-tRNA synthetase. This protein is a | 98.64 | |
| PRK05347 | 554 | glutaminyl-tRNA synthetase; Provisional | 98.63 | |
| TIGR00464 | 470 | gltX_bact glutamyl-tRNA synthetase, bacterial fami | 98.61 | |
| PRK14703 | 771 | glutaminyl-tRNA synthetase/YqeY domain fusion prot | 98.59 | |
| PRK14895 | 513 | gltX glutamyl-tRNA synthetase; Provisional | 98.58 | |
| PRK01406 | 476 | gltX glutamyl-tRNA synthetase; Reviewed | 98.57 | |
| KOG1195 | 567 | consensus Arginyl-tRNA synthetase [Translation, ri | 98.57 | |
| PLN02859 | 788 | glutamine-tRNA ligase | 98.55 | |
| cd00808 | 239 | GluRS_core catalytic core domain of discriminating | 98.54 | |
| PLN02627 | 535 | glutamyl-tRNA synthetase | 98.51 | |
| PF01921 | 360 | tRNA-synt_1f: tRNA synthetases class I (K); InterP | 98.5 | |
| COG1384 | 521 | LysS Lysyl-tRNA synthetase (class I) [Translation, | 98.49 | |
| KOG1147 | 712 | consensus Glutamyl-tRNA synthetase [Translation, r | 98.21 | |
| PRK00390 | 805 | leuS leucyl-tRNA synthetase; Validated | 97.46 | |
| TIGR00396 | 842 | leuS_bact leucyl-tRNA synthetase, eubacterial and | 97.39 | |
| KOG1148 | 764 | consensus Glutaminyl-tRNA synthetase [Translation, | 97.33 | |
| KOG1149 | 524 | consensus Glutamyl-tRNA synthetase (mitochondrial) | 97.22 | |
| PLN02563 | 963 | aminoacyl-tRNA ligase | 96.84 | |
| PRK12285 | 368 | tryptophanyl-tRNA synthetase; Reviewed | 95.97 | |
| PLN02486 | 383 | aminoacyl-tRNA ligase | 95.79 | |
| PRK12284 | 431 | tryptophanyl-tRNA synthetase; Reviewed | 94.6 | |
| cd00395 | 273 | Tyr_Trp_RS_core catalytic core domain of tyrosinyl | 94.5 | |
| PLN02886 | 389 | aminoacyl-tRNA ligase | 94.16 | |
| PRK13354 | 410 | tyrosyl-tRNA synthetase; Provisional | 94.06 | |
| PRK08560 | 329 | tyrosyl-tRNA synthetase; Validated | 94.04 | |
| TIGR00233 | 328 | trpS tryptophanyl-tRNA synthetase. This model repr | 93.98 | |
| cd00806 | 280 | TrpRS_core catalytic core domain of tryptophanyl-t | 93.82 | |
| COG0180 | 314 | TrpS Tryptophanyl-tRNA synthetase [Translation, ri | 93.75 | |
| cd00805 | 269 | TyrRS_core catalytic core domain of tyrosinyl-tRNA | 92.72 | |
| PRK05912 | 408 | tyrosyl-tRNA synthetase; Validated | 92.71 | |
| PRK06266 | 178 | transcription initiation factor E subunit alpha; V | 92.55 | |
| PTZ00126 | 383 | tyrosyl-tRNA synthetase; Provisional | 92.53 | |
| PF01927 | 147 | Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 T | 92.09 | |
| PF00579 | 292 | tRNA-synt_1b: tRNA synthetases class I (W and Y); | 90.98 | |
| PRK00927 | 333 | tryptophanyl-tRNA synthetase; Reviewed | 90.84 | |
| KOG0435 | 876 | consensus Leucyl-tRNA synthetase [Translation, rib | 90.47 | |
| PRK12556 | 332 | tryptophanyl-tRNA synthetase; Provisional | 89.84 | |
| TIGR00234 | 377 | tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA sy | 88.7 | |
| COG1656 | 165 | Uncharacterized conserved protein [Function unknow | 88.23 | |
| TIGR00373 | 158 | conserved hypothetical protein TIGR00373. This fam | 86.38 | |
| PRK12283 | 398 | tryptophanyl-tRNA synthetase; Reviewed | 86.02 | |
| PTZ00348 | 682 | tyrosyl-tRNA synthetase; Provisional | 85.86 | |
| COG0162 | 401 | TyrS Tyrosyl-tRNA synthetase [Translation, ribosom | 85.47 | |
| PRK12282 | 333 | tryptophanyl-tRNA synthetase II; Reviewed | 84.01 | |
| PF13240 | 23 | zinc_ribbon_2: zinc-ribbon domain | 83.44 | |
| smart00531 | 147 | TFIIE Transcription initiation factor IIE. | 81.54 |
| >PLN02224 methionine-tRNA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-69 Score=552.17 Aligned_cols=315 Identities=75% Similarity=1.245 Sum_probs=273.1
Q ss_pred HHHHHhhchhcchhhcccccccc---cccc-ccccccccc-----ccccccccccccccCCCCCCCCCCCCCEEEEccCC
Q 046127 28 MAARINYSIQNSLWLLNPLHSKA---TTHF-RNRLKFRQN-----LFSLSKGAVFCSYATNTDKSGTEPADPFVLTTPLY 98 (345)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~P 98 (345)
|++||+.+.+|.+.+++..+... .+++ ++.+.|+.+ -++.++...+|-.+..+- ....+++|+|++|||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ittp~p 78 (616)
T PLN02224 1 MAARINTSLHNALSFLKAFNTPLNTKPFSFCRNCFRFSKKLPYYSQFSSGKRALYCTSSSQES--TVDEADTFVLTTPLY 78 (616)
T ss_pred CcchhcCccccccchhhhcCCCCccCcchhhhccccccccccchhhcccccceeeccCCCccc--CCCCCCeEEEeCCCC
Confidence 57899999999999987766411 1111 222222222 122444555554444443 345678899999999
Q ss_pred CCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhcCcccCcc
Q 046127 99 YVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKDLDIAYDKF 178 (345)
Q Consensus 99 ypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~~lgI~~D~f 178 (345)
||||+|||||+++++++|+++||+|++|++|.+++|+|+||++|+.+|++.|++|+++|+++++.+++.+++|||++|.|
T Consensus 79 Y~NG~~HiGHa~~~~~aDviaR~~r~~G~~V~fv~G~DehG~kI~~~A~~~g~~p~e~~~~~~~~~~~~~~~l~I~~D~f 158 (616)
T PLN02224 79 YVNAPPHMGSAYTTIAADSIARFQRLLGKKVIFITGTDEHGEKIATSAAANGRNPPEHCDIISQSYRTLWKDLDIAYDKF 158 (616)
T ss_pred CCCCCCchhccHHHHHHHHHHHHHHhcCCceEEecCcCCcchHHHHHHHHcCCChHHHHHHHHHHHHHHHHHcCCCCCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCChhhHHHHHHHHHHHHhCCCeeecccCcccccCCCCccchhhhhcCCcCCCCCCCceEeeccccccchhHhHHHHH
Q 046127 179 IRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLYCVNCEEYKDEKELLENQCCPIHLKPCVARKEDNYFFALSKYQKLLE 258 (345)
Q Consensus 179 ~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~~c~~~l~d~el~~~~~c~~~~~pve~r~~~~~f~~l~~~~~~L~ 258 (345)
++|+++.|.+.|+++|.+|+++|+||+++++++||++|++|+++.|++++++|+.||.|+++++++||||+|++|+++|+
T Consensus 159 ~rTt~~~h~~~vq~~f~~L~~~G~Iy~~~~~~~yc~~ce~f~~~~~l~~~~~~~~~~~~~~~~~e~~~ff~Ls~~~~~L~ 238 (616)
T PLN02224 159 IRTTDPKHEAIVKEFYARVFANGDIYRADYEGLYCVNCEEYKDEKELLENNCCPVHQMPCVARKEDNYFFALSKYQKPLE 238 (616)
T ss_pred eeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeeeecCCCCCCCCHHHHcCCCCCCCCCCcceEEecceEEEEhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999987899999999999999999999999999999
Q ss_pred HHHhcCCCcccChHHHHHHHHHHhcCCCCcccccCCCCCCcccCCCCCCcEEEecCchhHHHHhcCCCCCCCchhhhhhC
Q 046127 259 DTLTENPDFVQPSFRLNEVQGWIKSGLRDFSISRASVDWGIPVPNDNKQTIYVWFDALLGYISALSEDRDQPSLRTAVSS 338 (345)
Q Consensus 259 e~l~~~~~~~~P~~~~~~~~~wl~~gL~D~~ISR~~~~WGIpvP~~~~~~iyVWfdal~gYls~~~~~~~~~~~~~~~~~ 338 (345)
+|+++++.+++|+.+++++.+||++||+||||||++.+||||||++++|||||||||++||||+++++.++......+..
T Consensus 239 ~~~~~~~~~~~p~~~~~~~~~~l~~gL~d~~ISR~~~~WGIpvP~~~~~viYVWfDAl~~Yls~~~~~~~~~~~~~~~~~ 318 (616)
T PLN02224 239 DILAQNPRFVQPSYRLNEVQSWIKSGLRDFSISRALVDWGIPVPDDDKQTIYVWFDALLGYISALTEDNKQQNLETAVSF 318 (616)
T ss_pred HHHHhCCCccCCHHHHHHHHHHHhcCCCCccccCCCCCCceECCCCCCcEEEEehhhHHHHHHHhcccccccccchhhcc
Confidence 99998877789999999999999999999999997568999999999999999999999999999988653211122455
Q ss_pred cCCCCC
Q 046127 339 GWPASL 344 (345)
Q Consensus 339 ~w~~~~ 344 (345)
|||.+|
T Consensus 319 ~w~~~v 324 (616)
T PLN02224 319 GWPASL 324 (616)
T ss_pred CCCcce
Confidence 898764
|
|
| >COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-68 Score=541.85 Aligned_cols=255 Identities=47% Similarity=0.844 Sum_probs=239.9
Q ss_pred CCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 046127 88 ADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTL 167 (345)
Q Consensus 88 ~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~ 167 (345)
.++++||+|+|||||+|||||+++++.+|+++||+|++|++|.|++|+|+||+||+.+|+++|++|+++|+++++.++++
T Consensus 4 ~~~~~VTtalpY~Ng~~HlGH~~~~l~ADv~aRy~Rl~G~~v~fvtGtDeHGt~I~~~A~~~g~tP~el~d~~~~~~~~~ 83 (558)
T COG0143 4 MKKILVTTALPYPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDEHGTKIELKAEKEGITPQELVDKNHEEFKEL 83 (558)
T ss_pred CCcEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCCeEEEEeccCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCcccCccccCCChhhHHHHHHHHHHHHhCCCeeecccCcccccCCCCccchhhhhc--------------------
Q 046127 168 WKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLYCVNCEEYKDEKELLE-------------------- 227 (345)
Q Consensus 168 l~~lgI~~D~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~~c~~~l~d~el~~-------------------- 227 (345)
++.|||+||.|+||+++.|.+.++++|.+|.++|+||.+.+.+|||+.|++|++|+++.+
T Consensus 84 ~~~l~IsfD~F~rTt~~~h~~~vq~~f~~L~~~G~I~~~~~~~~Yc~~~e~fl~dr~v~g~cp~cg~~~arGD~Ce~Cg~ 163 (558)
T COG0143 84 FKALNISFDNFIRTTSPEHKELVQEFFLKLYENGDIYLREYEGLYCVSCERFLPDRYVEGTCPKCGGEDARGDQCENCGR 163 (558)
T ss_pred HHHhCCcccccccCCCHHHHHHHHHHHHHHHHCCCEeccceeeeEcccccccccchheeccCCCcCccccCcchhhhccC
Confidence 999999999999999999999999999999999999999999999999999999998863
Q ss_pred --------CCcCCCCCCCceEeeccccccchhHhHHHHHHHHhcCCCcccChHHHHHHHHHHhcCCCCcccccCCCCCCc
Q 046127 228 --------NQCCPIHLKPCVARKEDNYFFALSKYQKLLEDTLTENPDFVQPSFRLNEVQGWIKSGLRDFSISRASVDWGI 299 (345)
Q Consensus 228 --------~~~c~~~~~pve~r~~~~~f~~l~~~~~~L~e~l~~~~~~~~P~~~~~~~~~wl~~gL~D~~ISR~~~~WGI 299 (345)
+++|..||.++|.|+++||||+|++|+++|++|+++++++++|.++++++.+||++||.||||||++.+|||
T Consensus 164 ~~~P~~l~~p~~~i~g~~p~~r~~~hyFf~L~~~~~~L~~~~~~~~~~~~p~~~~ne~~~~i~~GL~d~~IsR~~~~WGi 243 (558)
T COG0143 164 TLDPTELINPVCVISGATPEVREEEHYFFRLSKFQDKLLEWYESNPDFIWPANRRNEVLNFLKEGLKDLSITRTDLDWGI 243 (558)
T ss_pred cCCchhcCCCeeEeeCCCcccccceeEEEEHHHhHHHHHHHHHhCccccCChHHHHHHHHHHHccCcccceecCCCCCCc
Confidence 122333445567777999999999999999999999988999999999999999999999999996699999
Q ss_pred ccCCCCCCcEEEecCchhHHHHhcCCCCCCCchhhhhhCcCCCC
Q 046127 300 PVPNDNKQTIYVWFDALLGYISALSEDRDQPSLRTAVSSGWPAS 343 (345)
Q Consensus 300 pvP~~~~~~iyVWfdal~gYls~~~~~~~~~~~~~~~~~~w~~~ 343 (345)
|||++++||||||||||+||||+++++.+ ....+.|.+|||++
T Consensus 244 pvP~~p~kv~YVWfDAligYisa~~~~~~-~~~~~~~~~~W~~~ 286 (558)
T COG0143 244 PVPGDPGKVIYVWFDALIGYISALGELAE-IGDDEDFKKFWPAD 286 (558)
T ss_pred cCCCCCCCEEEEeeccHHHHHHHhcchhc-cCChHHHHhhCCCC
Confidence 99999999999999999999999999976 44568999999985
|
|
| >PRK12267 methionyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-65 Score=529.91 Aligned_cols=253 Identities=51% Similarity=0.935 Sum_probs=240.8
Q ss_pred CCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 046127 89 DPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLW 168 (345)
Q Consensus 89 ~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l 168 (345)
++|+||+|+|||||++||||+++++++|+++||+|++|++|.+++|+|+||++|+.+|++.|++|+++|+++.+.|+++|
T Consensus 4 ~~~~it~~~py~ng~~HiGH~~~~~~aDv~~R~~r~~G~~v~~~~g~D~~g~~i~~~A~~~g~~~~e~~d~~~~~fk~~l 83 (648)
T PRK12267 4 KTFYITTPIYYPNGKPHIGHAYTTIAADALARYKRLQGYDVFFLTGTDEHGQKIQQAAEKAGKTPQEYVDEISAGFKELW 83 (648)
T ss_pred CCEEEeeCCCCCCCCcccccchHHHHHHHHHHHHHhcCCceEeecCCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCcccCccccCCChhhHHHHHHHHHHHHhCCCeeecccCcccccCCCCccchhhhhcCCcCCCCCCCceEeecccccc
Q 046127 169 KDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLYCVNCEEYKDEKELLENQCCPIHLKPCVARKEDNYFF 248 (345)
Q Consensus 169 ~~lgI~~D~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~~c~~~l~d~el~~~~~c~~~~~pve~r~~~~~f~ 248 (345)
++|||++|.|++|+++.|.+.++++|.+|.++|+||++++.++||+.|++|+++.++++.+.|++||.|+|+++++||||
T Consensus 84 ~~lgI~~D~f~rTt~~~h~~~v~~~~~~L~~kG~IY~~~~~~~yc~~~~~~l~~~~l~~~~~c~~cg~~~e~~~~~~~f~ 163 (648)
T PRK12267 84 KKLDISYDKFIRTTDERHKKVVQKIFEKLYEQGDIYKGEYEGWYCVSCETFFTESQLVDGGKCPDCGREVELVKEESYFF 163 (648)
T ss_pred HHcCCCCCCCeeCCCHHHHHHHHHHHHHHHHCCCEEEeeEEEeecCCCCccCChHHhccCCcCCCCCCcCeEEecceEEE
Confidence 99999999999999999999999999999999999999999999999999999999886578999999999999999999
Q ss_pred chhHhHHHHHHHHhcCCCcccChHHHHHHH-HHHhcCCCCcccccCCCCCCcccCCCCCCcEEEecCchhHHHHhcCCCC
Q 046127 249 ALSKYQKLLEDTLTENPDFVQPSFRLNEVQ-GWIKSGLRDFSISRASVDWGIPVPNDNKQTIYVWFDALLGYISALSEDR 327 (345)
Q Consensus 249 ~l~~~~~~L~e~l~~~~~~~~P~~~~~~~~-~wl~~gL~D~~ISR~~~~WGIpvP~~~~~~iyVWfdal~gYls~~~~~~ 327 (345)
+|++|+++|.+|+++++.+++|+.+++++. +||++||+||||||++.+||||||++++|||||||||++||+|++++..
T Consensus 164 ~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~~l~~~l~D~~ISR~~~~WGipvP~~~~~v~yVWfDA~~~y~s~~~~~~ 243 (648)
T PRK12267 164 RMSKYQDRLLEYYEENPDFIQPESRKNEMINNFIKPGLEDLSISRTSFDWGIPVPFDPKHVVYVWIDALLNYITALGYGS 243 (648)
T ss_pred EcHHHHHHHHHHHhhCCcccCCHHHHHHHHHHHhhCCCCCcccCCCCCCcceECCCCCCCEEEEcccchHHHHHHcCCCC
Confidence 999999999999998766788999999998 9999999999999986789999999999999999999999999998753
Q ss_pred CCCchhhhhhCcCCCCC
Q 046127 328 DQPSLRTAVSSGWPASL 344 (345)
Q Consensus 328 ~~~~~~~~~~~~w~~~~ 344 (345)
++ .++|.+|||+++
T Consensus 244 ~~---~~~~~~~wp~~~ 257 (648)
T PRK12267 244 DD---DELFKKFWPADV 257 (648)
T ss_pred CC---chHHHhhcccce
Confidence 32 256999999874
|
|
| >KOG0436 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-63 Score=476.48 Aligned_cols=276 Identities=59% Similarity=1.018 Sum_probs=259.6
Q ss_pred cccccccccccCCCCCCCCCCCCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHH
Q 046127 67 LSKGAVFCSYATNTDKSGTEPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAA 146 (345)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A 146 (345)
...++..|-+..+. +....++++++|+|..|||..+||||+++.+++|+++|+++++|..|+|.+|+|+||++|+.+|
T Consensus 19 ~~~r~i~~r~ySs~--s~~~~~~~~~lTTPifYvNAaPHlGhlYS~llaDai~R~q~lkg~~v~fsTGTDEHGlKIqtaa 96 (578)
T KOG0436|consen 19 SGCRAIYCRSYSSE--STVDEGETFVLTTPIFYVNAAPHLGHLYSTLLADAIARFQRLKGKKVIFSTGTDEHGLKIQTAA 96 (578)
T ss_pred hccceeeeeecccc--ccccCCceeEEecceeecCCCcchhHHHHHHHHHHHHHHHhhcCCceEeecCCCccchhhhhhH
Confidence 45566667555544 3455667999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHHHHhhcCcccCccccCCChhhHHHHHHHHHHHHhCCCeeecccCcccccCCCCccchhhhh
Q 046127 147 ADGGSSPSEHCDVVSQAYKTLWKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLYCVNCEEYKDEKELL 226 (345)
Q Consensus 147 ~~~g~~p~~~~~~~~~~~~~~l~~lgI~~D~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~~c~~~l~d~el~ 226 (345)
+..|.+|.++||++.+.|++.++.+||.++.|+||+++.|...|++++..+.++|+||++++.+|||++|++|++++++.
T Consensus 97 atnG~~P~e~cDr~s~~f~qL~k~~gi~yt~FIRTTdpkH~a~Vqefw~~~~knG~iy~g~~eGwYcvsdEtf~pEskv~ 176 (578)
T KOG0436|consen 97 ATNGRNPPELCDRISQSFRQLWKDAGIAYTKFIRTTDPKHEAIVQEFWARVFKNGDIYRGDYEGWYCVSDETFYPESKVL 176 (578)
T ss_pred hhcCCChHHHHhhhhHHHHHHHHHhCcchhheeecCCchHHHHHHHHHHHHHhCCceeeecccceEeccccccCCHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcCC------CCCCCceEeeccccccchhHhHHHHHHHHhcCCCcccChHHHHHHHHHHhcCCCCcccccC--CCCCC
Q 046127 227 ENQCCP------IHLKPCVARKEDNYFFALSKYQKLLEDTLTENPDFVQPSFRLNEVQGWIKSGLRDFSISRA--SVDWG 298 (345)
Q Consensus 227 ~~~~c~------~~~~pve~r~~~~~f~~l~~~~~~L~e~l~~~~~~~~P~~~~~~~~~wl~~gL~D~~ISR~--~~~WG 298 (345)
.+++|+ .+|.||+++++++|||+|++|++.|.+++..+|+++.|+...+++++||+.||+|++|||+ +++||
T Consensus 177 k~p~~~gk~vsmEsg~~vv~~kE~NY~FrLSkfqk~l~d~lrkNP~fvqPs~~~~qVl~~lktglpDlSISRpsarl~WG 256 (578)
T KOG0436|consen 177 KNPCPPGKVVSMESGNPVVWRKEDNYFFRLSKFQKPLEDHLRKNPRFVQPSYFHNQVLSWLKTGLPDLSISRPSARLDWG 256 (578)
T ss_pred cCCCCCCceeeeccCCceeEecccceeeeHHhhhhHHHHHHhcCCCccCchHHHHHHHHHHHcCCCcccccChhhhcccC
Confidence 887776 3678999999999999999999999999999999999999999999999999999999995 69999
Q ss_pred cccCCCCCCcEEEecCchhHHHHhcCCCCCCCchhhhhhCcCCCCC
Q 046127 299 IPVPNDNKQTIYVWFDALLGYISALSEDRDQPSLRTAVSSGWPASL 344 (345)
Q Consensus 299 IpvP~~~~~~iyVWfdal~gYls~~~~~~~~~~~~~~~~~~w~~~~ 344 (345)
||||+|+.|+||||||||+||||.++++.++-++...++.+||+.+
T Consensus 257 IPvP~ddsQtIYVWfDAL~nYiSvig~~~~~~N~k~~ls~~wPat~ 302 (578)
T KOG0436|consen 257 IPVPGDDSQTIYVWFDALLNYISVIGYPNKQQNLKTALSFGWPATL 302 (578)
T ss_pred CCCCCCCcceEEEeHHHHhhHHHhhcCCchhccccceeecCCCcee
Confidence 9999999999999999999999999999887788899999999863
|
|
| >PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-64 Score=494.55 Aligned_cols=249 Identities=45% Similarity=0.827 Sum_probs=214.5
Q ss_pred EEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHhh
Q 046127 91 FVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKD 170 (345)
Q Consensus 91 ~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~~ 170 (345)
|+||+|+|||||+|||||+++++.+|+++||+|++|++|++++|+|+||++|+.+|+++|++|+++|+++++.|++++++
T Consensus 1 ~~ITt~~pY~Ng~lHlGH~~~~l~ADv~aR~~r~~G~~v~~~tGtDehG~~i~~~A~~~g~~p~~~~~~~~~~~~~~~~~ 80 (391)
T PF09334_consen 1 FYITTPIPYPNGDLHLGHLYPYLAADVLARYLRLRGHDVLFVTGTDEHGSKIETAAEKQGIDPEEFCDKYSAKFKELLEA 80 (391)
T ss_dssp EEEEEEEEETSSS-BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEE-SSHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHH
T ss_pred CEEecCCCCCCCCCCCChhHHHHHHHHHHHHHhhcccceeeEEecchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccCccccCCChhhHHHHHHHHHHHHhCCCeeecccCcccccCCCCccchhhhhcC-----------CcCCCCCCC--
Q 046127 171 LDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLYCVNCEEYKDEKELLEN-----------QCCPIHLKP-- 237 (345)
Q Consensus 171 lgI~~D~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~~c~~~l~d~el~~~-----------~~c~~~~~p-- 237 (345)
|||++|.|++|+++.|.+.|+++|.+|+++|+||++++.+|||++|++|+++.++.+. ..|+.||.+
T Consensus 81 ~~I~~D~F~rTt~~~h~~~v~~i~~~L~~~G~I~~~~~~~~Yc~~~e~fl~e~~v~g~CP~C~~~~a~g~~Ce~cG~~~~ 160 (391)
T PF09334_consen 81 LNISYDRFIRTTDDRHKEFVQEIFKRLYDNGYIYKREYEGWYCPSCERFLPESFVEGTCPYCGSDKARGDQCENCGRPLE 160 (391)
T ss_dssp TT---SEEEETTSHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETTTTEEE-GGGETCEETTT--SSCTTTEETTTSSBEE
T ss_pred cCCCCcceeCCCCHHHHHHHHHHHHHHHhcCceeecccceeEecCcCcccccceeeccccCcCccccCCCcccCCCCCcc
Confidence 9999999999999999999999999999999999999999999999999999998631 113455544
Q ss_pred ---------------ceEeeccccccchhHhHHHHHHHHhcCCCcccChHHHHHHHHHHhcCCCCcccccCCCCCCcccC
Q 046127 238 ---------------CVARKEDNYFFALSKYQKLLEDTLTENPDFVQPSFRLNEVQGWIKSGLRDFSISRASVDWGIPVP 302 (345)
Q Consensus 238 ---------------ve~r~~~~~f~~l~~~~~~L~e~l~~~~~~~~P~~~~~~~~~wl~~gL~D~~ISR~~~~WGIpvP 302 (345)
+++|++++|||+|++|+++|.+++++.+++ +|...++.+++||+++|+||||||+ .+||||||
T Consensus 161 ~~~l~~p~~~~~g~~~~~r~e~~~ff~L~~~~~~L~~~l~~~~~~-~~~~~~~~~~~~l~~~L~d~~Is~~-~~WGI~vP 238 (391)
T PF09334_consen 161 PEELINPVCKICGSPPEVREEENYFFKLSKFRDQLREWLESNPDF-PPPRVREIVRNWLKEGLPDLSISRP-LDWGIPVP 238 (391)
T ss_dssp CCCSECEEETTTS-B-EEEEEEEEEE-GGGGHHHHHHHHHHSTTS-SHHHHHHHHHHHHHT----EE-ECT-TSSSEEET
T ss_pred cccccCCccccccccCccccceEEEEehHHhHHHHHHHHhcCCCC-CChhHHHHHHHHhhcccCceeeecC-CCCcceee
Confidence 458999999999999999999999988654 7777788889999999999999996 89999999
Q ss_pred CCCCCcEEEecCchhHHHHhcCCCCCCCchhhhhhCcCC
Q 046127 303 NDNKQTIYVWFDALLGYISALSEDRDQPSLRTAVSSGWP 341 (345)
Q Consensus 303 ~~~~~~iyVWfdal~gYls~~~~~~~~~~~~~~~~~~w~ 341 (345)
++++|+|||||||++||||++++..+.....+.+.++|+
T Consensus 239 ~~~~~~iyVWfdal~~Ylt~~~~~~~~~~~~~~~~~~w~ 277 (391)
T PF09334_consen 239 GDPGQVIYVWFDALIGYLTATGYLAEKRGDPEEFKKWWA 277 (391)
T ss_dssp TEEEEEE-HHHHHHTHHHHTTTTTHHHTTTSHHHHHHHC
T ss_pred ccCCceEEEcchHHHHHHHHhccccccccccchhhhhcc
Confidence 999999999999999999999998743344578999994
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A .... |
| >cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-61 Score=473.54 Aligned_cols=245 Identities=23% Similarity=0.362 Sum_probs=227.4
Q ss_pred CCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhC---------CCCHH-----
Q 046127 89 DPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADG---------GSSPS----- 154 (345)
Q Consensus 89 ~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~---------g~~p~----- 154 (345)
++|+|++|||||||+|||||+++++++|+++||+||+|++|.+++|+|+||+||+..|++. +++++
T Consensus 1 ~~f~i~~~pPy~nG~lHiGH~~~~~~~Dv~~Ry~r~~G~~V~~~~G~D~hG~pie~~a~k~~~~~~~~~~~~~~~~~~~~ 80 (382)
T cd00817 1 PVFVIDTPPPNVTGSLHMGHALNNTIQDIIARYKRMKGYNVLWPPGTDHAGIATQVVVEKKLGIEGKTRHDLGREEFLEK 80 (382)
T ss_pred CcEEEecCCCCCCCcchHHHHHHHHHHHHHHHHHHhcCCcccccCccCCCCChHHHHHHHHhcccccchhcCCHHHHHHH
Confidence 4799999999999999999999999999999999999999999999999999999999874 34544
Q ss_pred --HHHHHHHHHHHHHHhhcCcccC--ccccCCChhhHHHHHHHHHHHHhCCCeeecccCcccccCCCCccchhhhhcCCc
Q 046127 155 --EHCDVVSQAYKTLWKDLDIAYD--KFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLYCVNCEEYKDEKELLENQC 230 (345)
Q Consensus 155 --~~~~~~~~~~~~~l~~lgI~~D--~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~~c~~~l~d~el~~~~~ 230 (345)
++++++.+.+++++++|||++| .+++|+++.|.+.++++|.+|+++|+||++.++++||+.|+++|++.|+
T Consensus 81 ~~~~~~~~~~~~~~~~~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~yc~~~~t~l~~~ev----- 155 (382)
T cd00817 81 CWEWKEESGGKIREQLKRLGASVDWSREYFTMDPGLSRAVQEAFVRLYEKGLIYRDNRLVNWCPKLRTAISDIEV----- 155 (382)
T ss_pred HHHHHHHHHHHHHHHHHHhCceeecCCCcCCCCHHHHHHHHHHHHHHHHCCCEEeeeeEEeecCCcCCCCCcchh-----
Confidence 5889999999999999999887 9999999999999999999999999999999999999999999999988
Q ss_pred CCCCCCCceEeeccccccchhHhHHHHHHHHhcCCCcccChHHHHHHHHHHhcCCCCcccccCCCCCCcccCC----C--
Q 046127 231 CPIHLKPCVARKEDNYFFALSKYQKLLEDTLTENPDFVQPSFRLNEVQGWIKSGLRDFSISRASVDWGIPVPN----D-- 304 (345)
Q Consensus 231 c~~~~~pve~r~~~~~f~~l~~~~~~L~e~l~~~~~~~~P~~~~~~~~~wl~~gL~D~~ISR~~~~WGIpvP~----~-- 304 (345)
|++||+|+++++++||||+|++|+++|++++++++..++|+.+++++.+||++ |+||||||+ .+||||||. +
T Consensus 156 c~~cg~~~~~~~~~qwf~~l~~~~~~l~~~~~~~~~~~~P~~~~~~~~~~l~~-l~Dw~ISR~-~~WGipvP~~~~~~~~ 233 (382)
T cd00817 156 CSRSGDVIEPLLKPQWFVKVKDLAKKALEAVKEGDIKFVPERMEKRYENWLEN-IRDWCISRQ-LWWGHRIPAWYCKDGG 233 (382)
T ss_pred cccCCCeEEEEecCeeEEehHHHHHHHHHHHhcCCcEEEChHHHHHHHHHHhh-Cccceeeec-cccCCccceEEeCCCC
Confidence 89999999999999999999999999999999865567999999999999987 999999997 699999995 3
Q ss_pred ------------------------------CCCcEEEecCchhHHHHhcCCCCCCCchhhhhhCcCCCCC
Q 046127 305 ------------------------------NKQTIYVWFDALLGYISALSEDRDQPSLRTAVSSGWPASL 344 (345)
Q Consensus 305 ------------------------------~~~~iyVWfdal~gYls~~~~~~~~~~~~~~~~~~w~~~~ 344 (345)
+++|+||||||+++|+++++++.++ +.+.++||+|+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~dvWfds~~~~~~~~~~~~~~----~~~~~~~p~d~ 299 (382)
T cd00817 234 HWVVAREEDEAIDKAAPEACVPCGGEELKQDEDVLDTWFSSSLWPFSTLGWPEET----KDLKKFYPTSL 299 (382)
T ss_pred cEEecchhHHHHHHhccccccCCCccCeeECCceeeeeecCCCcHHHHhCCCCcc----hhHhhcCCCCe
Confidence 4799999999999999999866442 56999999985
|
Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. |
| >PLN02610 probable methionyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-61 Score=507.12 Aligned_cols=248 Identities=28% Similarity=0.575 Sum_probs=225.0
Q ss_pred CCCCCEEEEccCCCCCCcCchhHHHH-HHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHH
Q 046127 86 EPADPFVLTTPLYYVNAPPHMGSAYT-TIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAY 164 (345)
Q Consensus 86 ~~~~~~~I~~~~PypnG~LHIGHar~-~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~ 164 (345)
...++++||+|+|||||+|||||+++ ++.+|+++||+||+|++|+|++|+|+||++|+.+|++.|++|+++|+++++.|
T Consensus 14 ~~~~~~~ITt~~pY~Ng~~HlGH~~~~~l~aDv~aRy~r~~G~~v~f~~GtDehG~~i~~~A~~~g~~p~e~~d~~~~~~ 93 (801)
T PLN02610 14 PGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNAIYICGTDEYGTATETKALEENCTPKEICDKYHAIH 93 (801)
T ss_pred CCCCCEEEeCCCCCCCCCcccchhhhhHHHHHHHHHHHHhCCCceEecccccCCcHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 34578999999999999999999995 78899999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCcccCccccCCChhhHHHHHHHHHHHHhCCCeeecccCcccccCCCCccchhhhhc-----------------
Q 046127 165 KTLWKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLYCVNCEEYKDEKELLE----------------- 227 (345)
Q Consensus 165 ~~~l~~lgI~~D~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~~c~~~l~d~el~~----------------- 227 (345)
++++++|||++|.|++|+++.|.+.|+++|.+|+++|+||++.+.++||++|++||+|.++.+
T Consensus 94 ~~~~~~l~i~~D~f~rT~~~~h~~~vq~~f~~L~~~G~Iy~~~~~~~yc~~~e~fl~d~~v~G~CP~~~C~~~~a~Gd~C 173 (801)
T PLN02610 94 KEVYDWFDISFDKFGRTSTPQQTEICQAIFKKLMENNWLSENTMQQLYCDTCQKFLADRLVEGTCPTEGCNYDSARGDQC 173 (801)
T ss_pred HHHHHHcCCccccCccCCCHHHHHHHHHHHHHHHHCCCEEEeeEEEeecCCCCCCcchHHhcCcCCccccCccccccchh
Confidence 999999999999999999999999999999999999999999999999999999999998752
Q ss_pred -------------CCcCCCCCCCceEeeccccccchhHhHHHHHHHHhcCCCcccC---hHHHHHHHHHHhcCCCCcccc
Q 046127 228 -------------NQCCPIHLKPCVARKEDNYFFALSKYQKLLEDTLTENPDFVQP---SFRLNEVQGWIKSGLRDFSIS 291 (345)
Q Consensus 228 -------------~~~c~~~~~pve~r~~~~~f~~l~~~~~~L~e~l~~~~~~~~P---~~~~~~~~~wl~~gL~D~~IS 291 (345)
+++|..||.++++++++||||+|++|+++|.+|+++++ +.| .+.++.+.+||++||+|||||
T Consensus 174 e~Cg~~~~p~eLi~p~c~~~g~~~~~~~~~~~ff~Ls~~~~~L~~~~~~~~--~~~~~~~n~~~~~~~~l~~gL~d~~Is 251 (801)
T PLN02610 174 EKCGKLLNPTELIDPKCKVCKNTPRIRDTDHLFLELPLLKDKLVEYINETS--VAGGWSQNAIQTTNAWLRDGLKPRCIT 251 (801)
T ss_pred hhccccCChhhhcCCcccCCCCcceEEEcceEEEEhHHHHHHHHHHHHhCC--CCCCcCHHHHHHHHHHHhCCCCCccee
Confidence 13355578899999999999999999999999998753 233 344556679999999999999
Q ss_pred cCCCCCCcccCCC--CCCcEEEecCchhHHHHhcCCCCCCCchhhhhhCcCCC
Q 046127 292 RASVDWGIPVPND--NKQTIYVWFDALLGYISALSEDRDQPSLRTAVSSGWPA 342 (345)
Q Consensus 292 R~~~~WGIpvP~~--~~~~iyVWfdal~gYls~~~~~~~~~~~~~~~~~~w~~ 342 (345)
|+ ..||||||.+ ++||||||||||+||||++..+.+ .|.+|||+
T Consensus 252 R~-~~WGipvP~~~~~~~v~YVWfDAl~~Yis~~~~~~~------~~~~~W~~ 297 (801)
T PLN02610 252 RD-LKWGVPVPLEKYKDKVFYVWFDAPIGYVSITACYTP------EWEKWWKN 297 (801)
T ss_pred ee-cCCcccCCCCCCCCcEEEEehhhHHHHHHHHhhhhh------HHHHhcCC
Confidence 96 8999999976 899999999999999999865532 48889976
|
|
| >PRK00133 metG methionyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-60 Score=495.91 Aligned_cols=249 Identities=27% Similarity=0.485 Sum_probs=230.7
Q ss_pred CCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 046127 89 DPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLW 168 (345)
Q Consensus 89 ~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l 168 (345)
++++||+|+|||||.|||||+++++++|+++||+|++|++|.+++|+|+||+||+.+|++.|++|+++|+++.+.|++++
T Consensus 2 ~~~~itt~~py~ng~~HiGH~~~~l~aDv~aR~~r~~G~~V~~~~g~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~ 81 (673)
T PRK00133 2 RKILVTCALPYANGPIHLGHLVEYIQADIWVRYQRMRGHEVLFVCADDAHGTPIMLKAEKEGITPEELIARYHAEHKRDF 81 (673)
T ss_pred CCEEEeCCCCCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEeCccCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCcccCccccCCChhhHHHHHHHHHHHHhCCCeeecccCcccccCCCCccchhhhhc---------------------
Q 046127 169 KDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLYCVNCEEYKDEKELLE--------------------- 227 (345)
Q Consensus 169 ~~lgI~~D~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~~c~~~l~d~el~~--------------------- 227 (345)
++|||++|.|++|+++.|.+.++++|.+|+++|+||++++.++||+.|++||++.++.+
T Consensus 82 ~~l~i~~d~f~rtt~~~h~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~v~g~cp~C~~~d~~g~~ce~cg~~ 161 (673)
T PRK00133 82 AGFGISFDNYGSTHSEENRELAQEIYLKLKENGYIYEKTIEQLYDPEKGMFLPDRFVKGTCPKCGAEDQYGDNCEVCGAT 161 (673)
T ss_pred HHhCCCCCCCccCCcHHHHHHHHHHHHHHHHCCCEEEeeeEEEEeCCCCCCccchheecccCCCCCcccCCchhhhcccc
Confidence 99999999999999999999999999999999999999999999999999999988751
Q ss_pred -------CCcCCCCCCCceEeeccccccchhHhHHHHHHHHhcCCCcccChHHHHHHHHHHhcCCCCcccccCCCCC-Cc
Q 046127 228 -------NQCCPIHLKPCVARKEDNYFFALSKYQKLLEDTLTENPDFVQPSFRLNEVQGWIKSGLRDFSISRASVDW-GI 299 (345)
Q Consensus 228 -------~~~c~~~~~pve~r~~~~~f~~l~~~~~~L~e~l~~~~~~~~P~~~~~~~~~wl~~gL~D~~ISR~~~~W-GI 299 (345)
++.|.+||.++|+++++||||+|++|+++|.+++++.+ .| |+.+++++.+||+++|+||||||+ .+| ||
T Consensus 162 ~~~~~l~~~~~~~~g~~~e~~~~~~~f~~l~~~~~~l~~~~~~~~-~~-~~~~~~~~~~~l~~~l~d~~ISR~-~~W~Gi 238 (673)
T PRK00133 162 YSPTELINPKSAISGATPVLKESEHFFFKLPRFEEFLKEWITRSG-EL-QPNVANKMKEWLEEGLQDWDISRD-APYFGF 238 (673)
T ss_pred CChHhhcCCccccCCCcceEEecceEEEEHHHHHHHHHHHHhcCC-CC-CHHHHHHHHHHHhCCCcccceeee-CCccce
Confidence 24577788999999999999999999999999997654 34 778899999999999999999997 899 99
Q ss_pred ccCCCCCCcEEEecCchhHHHHhcCCCCCCCchhhhhhCcCC
Q 046127 300 PVPNDNKQTIYVWFDALLGYISALSEDRDQPSLRTAVSSGWP 341 (345)
Q Consensus 300 pvP~~~~~~iyVWfdal~gYls~~~~~~~~~~~~~~~~~~w~ 341 (345)
|||++++|+|||||||++||+|++..+.+.+ ..+.|.+||+
T Consensus 239 pvP~~~~~~iyVW~dal~~Yl~~~~~~~~~~-~~~~~~~~w~ 279 (673)
T PRK00133 239 EIPGAPGKVFYVWLDAPIGYISSTKNLCDKR-GGLDWDEYWK 279 (673)
T ss_pred ECCCCCCeEEEEcccchhhhhHHHhhhcccc-cchhHHHhcC
Confidence 9999999999999999999999997654321 1246899994
|
|
| >PRK11893 methionyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-59 Score=475.39 Aligned_cols=256 Identities=53% Similarity=0.943 Sum_probs=239.6
Q ss_pred CCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 046127 89 DPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLW 168 (345)
Q Consensus 89 ~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l 168 (345)
++++|++|||||||++||||+|+++.+|+++||+|++|++|.+++|+|+||++|+..|++.|++++++|+++.+.|+++|
T Consensus 1 ~~~~i~~~~P~~~g~~HiGh~~~~~~~Dv~~R~~r~~G~~v~~v~g~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l 80 (511)
T PRK11893 1 KKFYITTPIYYPNGKPHIGHAYTTLAADVLARFKRLRGYDVFFLTGTDEHGQKIQRKAEEAGISPQELADRNSAAFKRLW 80 (511)
T ss_pred CCEEEecCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCcEEecCCCCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCcccCccccCCChhhHHHHHHHHHHHHhCCCeeecccCcccccCCCCccchhhhhcC-CcCCCCCCCceEeeccccc
Q 046127 169 KDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLYCVNCEEYKDEKELLEN-QCCPIHLKPCVARKEDNYF 247 (345)
Q Consensus 169 ~~lgI~~D~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~~c~~~l~d~el~~~-~~c~~~~~pve~r~~~~~f 247 (345)
++|||++|.|++|+++.|.+.++++|.+|.++|++|++++.++||++|++++++.++.++ ++|++||+|+++++++|||
T Consensus 81 ~~l~I~~D~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~~~~~~~~~~~l~~~~l~~~~p~~~~~~~~~~~~~~~~~f 160 (511)
T PRK11893 81 EALNISYDDFIRTTDPRHKEAVQEIFQRLLANGDIYLGKYEGWYCVRCEEFYTESELIEDGYRCPPTGAPVEWVEEESYF 160 (511)
T ss_pred HHhCCCcCCceeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeeeccccccccCCHHHhcCCCCCCCCCCCcceEEecCeEE
Confidence 999999999999999999999999999999999999999999999999999999999864 4699999999999999999
Q ss_pred cchhHhHHHHHHHHhcCCCcccChHHHHHHHHHHhcCCCCcccccCCCCCCcccCCCCCCcEEEecCchhHHHHhcCCCC
Q 046127 248 FALSKYQKLLEDTLTENPDFVQPSFRLNEVQGWIKSGLRDFSISRASVDWGIPVPNDNKQTIYVWFDALLGYISALSEDR 327 (345)
Q Consensus 248 ~~l~~~~~~L~e~l~~~~~~~~P~~~~~~~~~wl~~gL~D~~ISR~~~~WGIpvP~~~~~~iyVWfdal~gYls~~~~~~ 327 (345)
|+|++|+++|.++++++..+++|+..++.+.+||+++++||||||++.+||||||++++|++||||||+++|+|++++++
T Consensus 161 ~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~l~~~~~D~~isR~~~~WGipiP~~~~~~~~vWfda~~~y~s~~~~p~ 240 (511)
T PRK11893 161 FRLSKYQDKLLELYEANPDFIQPASRRNEVISFVKSGLKDLSISRTNFDWGIPVPGDPKHVIYVWFDALTNYLTALGYPD 240 (511)
T ss_pred EEcHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHCCCCCcccCCCCCCCCccCCCCCCceEEEEecCcHHHHhHhcccc
Confidence 99999999999999885556789988999999999999999999933799999999999999999999999999998876
Q ss_pred CCCchhhhhhCcCCCCC
Q 046127 328 DQPSLRTAVSSGWPASL 344 (345)
Q Consensus 328 ~~~~~~~~~~~~w~~~~ 344 (345)
+.....+.+.+|||.|+
T Consensus 241 ~~~~~~~~~~~~~~~D~ 257 (511)
T PRK11893 241 DEELLAELFNKYWPADV 257 (511)
T ss_pred ccccchhHHHhcCCCcc
Confidence 54323356889999874
|
|
| >cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-59 Score=449.71 Aligned_cols=238 Identities=49% Similarity=0.888 Sum_probs=222.3
Q ss_pred CEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Q 046127 90 PFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWK 169 (345)
Q Consensus 90 ~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~ 169 (345)
+++|++|+|||||+|||||+++++++|+++||+|++|++|.+++|+|+||++|+.+|++.|++|+++|+.+.+.|+++|+
T Consensus 1 ~~~it~~~Py~ng~~HlGH~~~~~~~Dv~~R~~r~~G~~V~~~~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l~ 80 (319)
T cd00814 1 KVLITTALPYVNGVPHLGHLYGTVLADVFARYQRLRGYDVLFVTGTDEHGTKIEQKAEEEGVTPQELCDKYHEIFKDLFK 80 (319)
T ss_pred CEEEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHhCCCcccccCccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCcccCccccCCChhhHHHHHHHHHHHHhCCCeeecccCcccccCCCCccchhhhhcCCcCCCCCCCceEeeccccccc
Q 046127 170 DLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLYCVNCEEYKDEKELLENQCCPIHLKPCVARKEDNYFFA 249 (345)
Q Consensus 170 ~lgI~~D~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~~c~~~l~d~el~~~~~c~~~~~pve~r~~~~~f~~ 249 (345)
+|||++|.|++|+++.|.+.++++|++|.++|++|+++..++||+.|+++|+ |+++++||||+
T Consensus 81 ~LgI~~D~~~~tt~~~~~~~v~~i~~~L~ekG~iY~~~~~~~yc~~~~~~l~-----------------e~~~~~~~ff~ 143 (319)
T cd00814 81 WLNISFDYFIRTTSPRHKEIVQEFFKKLYENGYIYEGEYEGLYCVSCERFLP-----------------EWREEEHYFFR 143 (319)
T ss_pred HcCCcCCCCeeCCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeECCCCCcEee-----------------EEEeeeeEEEE
Confidence 9999999999999999999999999999999999999999999999999999 89999999999
Q ss_pred hhHhHHHHHHHHhcCCCcccChHHHHHHHHHHhcCCCCcccccCCCCCCcccCCCCCCcEEEecCchhHHHHhcCCCCCC
Q 046127 250 LSKYQKLLEDTLTENPDFVQPSFRLNEVQGWIKSGLRDFSISRASVDWGIPVPNDNKQTIYVWFDALLGYISALSEDRDQ 329 (345)
Q Consensus 250 l~~~~~~L~e~l~~~~~~~~P~~~~~~~~~wl~~gL~D~~ISR~~~~WGIpvP~~~~~~iyVWfdal~gYls~~~~~~~~ 329 (345)
|++|+++|++++++++.+++|+..++.+.+||+++|+||||||+..+||||||++++++|||||||++||+|+++++...
T Consensus 144 l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~l~~~l~d~~isR~~~~WGipvp~~~~~~~yvWfda~~~y~~~~~~~~~~ 223 (319)
T cd00814 144 LSKFQDRLLEWLEKNPDFIWPENARNEVLSWLKEGLKDLSITRDLFDWGIPVPLDPGKVIYVWFDALIGYISATGYYNEE 223 (319)
T ss_pred hHHHHHHHHHHHHhCCccCCCHHHHHHHHHHHhCCCcccCCCccCcccCeeCCCCCCcEEEEehhhHHHHHHHccccccc
Confidence 99999999999998765578999999999999999999999998339999999999999999999999999999987654
Q ss_pred CchhhhhhCcCCCCC
Q 046127 330 PSLRTAVSSGWPASL 344 (345)
Q Consensus 330 ~~~~~~~~~~w~~~~ 344 (345)
......+..+||.++
T Consensus 224 ~~~~~~~~~~~~~~v 238 (319)
T cd00814 224 WGNSWWWKDGWPELV 238 (319)
T ss_pred ccchhhhhcCCCceE
Confidence 222235667777653
|
Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function. |
| >TIGR00398 metG methionyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-58 Score=469.81 Aligned_cols=249 Identities=41% Similarity=0.752 Sum_probs=228.8
Q ss_pred EEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHhh
Q 046127 91 FVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKD 170 (345)
Q Consensus 91 ~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~~ 170 (345)
++||+|+|||||.|||||+++++.+|+++||+|++|++|.+++|+|+||++|+.+|++.|++|+++++.+.+.|++++++
T Consensus 1 ~~it~~~P~~ng~lHiGH~~~~~~aDvl~R~~r~~G~~V~~v~g~D~~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l~~ 80 (530)
T TIGR00398 1 ILITTALPYANGKPHLGHAYTTILADVYARYKRLRGYEVLFVCGTDEHGTKIELKAEQEGLTPKELVDKYHEEFKDDWKW 80 (530)
T ss_pred CEEecCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCeEEEecccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccCccccCCChhhHHHHHHHHHHHHhCCCeeecccCcccccCCCCccchhhhhc-----------------------
Q 046127 171 LDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLYCVNCEEYKDEKELLE----------------------- 227 (345)
Q Consensus 171 lgI~~D~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~~c~~~l~d~el~~----------------------- 227 (345)
|||++|.|++|+++.|.+.++++|.+|.++|++|++++.++||+.|+++++|.++.+
T Consensus 81 LgI~~D~~~~t~~~~~~~~v~~~~~~L~~kG~iY~~~~~v~~~~~~~~~l~~~~v~g~cp~c~~~~~~g~~ce~cg~~~~ 160 (530)
T TIGR00398 81 LNISFDRFIRTTDEEHKEIVQKIFQKLKENGYIYEKEIKQLYCPECEMFLPDRYVEGTCPKCGSEDARGDHCEVCGRHLE 160 (530)
T ss_pred hCCCCCCCccCCCHHHHHHHHHHHHHHHHCCCEEEeeeEEEecCCCCcCCchhhhcCCCCCCCCcccccchhhhccccCC
Confidence 999999999999999999999999999999999999999999999999999987543
Q ss_pred -----CCcCCCCCCCceEeeccccccchhHhHHHHHHHHhcCCC-cccChHHHHHHHHHHhcCCCCcccccCCCC-CCcc
Q 046127 228 -----NQCCPIHLKPCVARKEDNYFFALSKYQKLLEDTLTENPD-FVQPSFRLNEVQGWIKSGLRDFSISRASVD-WGIP 300 (345)
Q Consensus 228 -----~~~c~~~~~pve~r~~~~~f~~l~~~~~~L~e~l~~~~~-~~~P~~~~~~~~~wl~~gL~D~~ISR~~~~-WGIp 300 (345)
+++|++||+|+|+++++||||+|++|+++|.+++++++. ..+|+.+++.+.+||+++|+||||||+ .+ ||||
T Consensus 161 ~~~l~~p~~~~~~~~~e~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~iSR~-~~~WGip 239 (530)
T TIGR00398 161 PTELINPRCKICGAKPELRDSEHYFFRLSAFEKELEEWIRKNPESGSPASNVKNKAQNWLKGGLKDLAITRD-LVYWGIP 239 (530)
T ss_pred HHHhcCCccccCCCcceEEecceEEEEhHHHHHHHHHHHHhCCccCCCcHHHHHHHHHHHhCCCCCccccCc-CCCCCee
Confidence 234777889999999999999999999999999986542 235777777888999999999999998 57 9999
Q ss_pred cCCCCCCcEEEecCchhHHHHhcCCCCCCCchhhhhhCcCCCC
Q 046127 301 VPNDNKQTIYVWFDALLGYISALSEDRDQPSLRTAVSSGWPAS 343 (345)
Q Consensus 301 vP~~~~~~iyVWfdal~gYls~~~~~~~~~~~~~~~~~~w~~~ 343 (345)
||+++++++||||||++||++++++... ..+.+.+|||++
T Consensus 240 vP~~~~~~~yvW~da~~~y~~~~~~~~~---~~~~~~~~w~~~ 279 (530)
T TIGR00398 240 VPNDPNKVVYVWFDALIGYISSLGILSG---DTEDWKKWWNND 279 (530)
T ss_pred CCCCCCcEEEEeecchHHhHhhhccccC---ChhhHHHhCCCC
Confidence 9999999999999999999999865432 235789999986
|
The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma |
| >PRK12268 methionyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-58 Score=471.49 Aligned_cols=250 Identities=35% Similarity=0.600 Sum_probs=228.6
Q ss_pred CCCEEEEccCCCCCCcCchhHHHHH-HHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 046127 88 ADPFVLTTPLYYVNAPPHMGSAYTT-IAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKT 166 (345)
Q Consensus 88 ~~~~~I~~~~PypnG~LHIGHar~~-i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~ 166 (345)
.++++|++|||||||.|||||++++ +.+|+++||+|++|++|.+++|+|+||++|+.+|++.|++++++|+++.+.|++
T Consensus 2 ~~~~~i~~~~py~ng~~HiGH~~~~~~~~D~~~R~~r~~G~~v~~~~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~ 81 (556)
T PRK12268 2 MMRILITSAWPYANGPLHLGHLAGSGLPADVFARYQRLKGNEVLFVSGSDEHGTPIELAAKKEGVTPQELADKYHEEHKE 81 (556)
T ss_pred CCcEEEecCCCCCCCCccccccccchhHHHHHHHHHHhcCCceEecCcCCCcccHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 3679999999999999999999997 999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCcccCccccCCChhhHHHHHHHHHHHHhCCCeeecccCcccccCCCCccchhhhhc-------------------
Q 046127 167 LWKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLYCVNCEEYKDEKELLE------------------- 227 (345)
Q Consensus 167 ~l~~lgI~~D~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~~c~~~l~d~el~~------------------- 227 (345)
++++|||++|.|++|+++.|.+.++++|.+|+++|+||++++.++||+.|+++|++.++.+
T Consensus 82 ~~~~l~i~~d~~~~t~~~~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~~~~l~~~~v~g~cp~c~~~~~~G~~ce~cg 161 (556)
T PRK12268 82 DFKKLGISYDLFTRTTSPNHHEVVQEFFLKLYENGYIYKKTIEQAYCPSDGRFLPDRYVEGTCPYCGYEGARGDQCDNCG 161 (556)
T ss_pred HHHHcCCcCCCCcCCCCHHHHHHHHHHHHHHHHCCCeEEeeeEEEecCCCCcCcCccceeccCCCCCCcccCCchhhhcc
Confidence 9999999999999999999999999999999999999999999999999999999988753
Q ss_pred ---------CCcCCCCCCCceEeeccccccchhHhHHHHHHHHhcCCCcccChHHHHHHHHHHhcCCCCcccccCCCCCC
Q 046127 228 ---------NQCCPIHLKPCVARKEDNYFFALSKYQKLLEDTLTENPDFVQPSFRLNEVQGWIKSGLRDFSISRASVDWG 298 (345)
Q Consensus 228 ---------~~~c~~~~~pve~r~~~~~f~~l~~~~~~L~e~l~~~~~~~~P~~~~~~~~~wl~~gL~D~~ISR~~~~WG 298 (345)
+++|.+|++++|+++++||||++++|+++|.+++++. .++|+..++.+.+||+++++||||||+ ..||
T Consensus 162 ~~~~~~~l~~p~~~~~~~~~e~~~~~qwF~~l~~~~~~l~~~~~~~--~~~p~~~~~~~~~~l~~~l~Dw~ISR~-~~WG 238 (556)
T PRK12268 162 ALLDPTDLINPRSKISGSTPEFRETEHFFLDLPAFAERLRAWIESS--GDWPPNVLNFTLNWLKEGLKPRAITRD-LDWG 238 (556)
T ss_pred ccCChHHhcCCccccCCCcCeEEecceEEEEhHHHHHHHHHHHhhc--cCCCHHHHHHHHHHHhCCCCCcCceee-CCCC
Confidence 1355667789999999999999999999999999853 468888999999999988999999998 5899
Q ss_pred cccC--CCCCCcEEEecCchhHHHHhcCCCCCCCchhhhhhCcC
Q 046127 299 IPVP--NDNKQTIYVWFDALLGYISALSEDRDQPSLRTAVSSGW 340 (345)
Q Consensus 299 IpvP--~~~~~~iyVWfdal~gYls~~~~~~~~~~~~~~~~~~w 340 (345)
|||| .++++++||||||++||+++++++.+.......+.+||
T Consensus 239 ipiP~~~~~~~~iyvW~da~~~y~~~~~~~~~~~g~~~~~~~~w 282 (556)
T PRK12268 239 IPVPWPGFEGKVFYVWFDAVIGYISASKEWAERTGDPEAWKEFW 282 (556)
T ss_pred eeCCCCCCCCcEEEEeehHhhHHHHHHHHHHHhcCCchHHHHHh
Confidence 9999 78899999999999999998776543211224577888
|
|
| >cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-51 Score=399.37 Aligned_cols=224 Identities=24% Similarity=0.373 Sum_probs=205.6
Q ss_pred CCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhC-CCCH--------------
Q 046127 89 DPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADG-GSSP-------------- 153 (345)
Q Consensus 89 ~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~-g~~p-------------- 153 (345)
++|+|.+|||||||++||||+++++++|+++||+|++|++|.+++|+|+||++|+.+|++. |+++
T Consensus 1 ~~f~i~~~pP~vnG~lHiGHa~~~~~~Dvl~Ry~r~~G~~V~~~~g~D~hG~~ie~ka~k~lg~~~~~~~~~~~~~~~~~ 80 (338)
T cd00818 1 PEFVFHDGPPYANGLPHYGHALNKILKDIINRYKTMQGYYVPRRPGWDCHGLPIELKVEKELGISGKKDIEKMGIAEFNA 80 (338)
T ss_pred CCeEEecCCCCCCCCchHHHHHHHHHHHHHHHHHHhcCCccCCcCCcCCCCchhHHHHHHHhCCCCCcchhhcCHHHHHH
Confidence 4699999999999999999999999999999999999999999999999999999999886 7654
Q ss_pred --HHHHHHHHHHHHHHHhhcCc--ccCccccCCChhhHHHHHHHHHHHHhCCCeeecccCcccccCCCCccchhhhhcCC
Q 046127 154 --SEHCDVVSQAYKTLWKDLDI--AYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLYCVNCEEYKDEKELLENQ 229 (345)
Q Consensus 154 --~~~~~~~~~~~~~~l~~lgI--~~D~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~~c~~~l~d~el~~~~ 229 (345)
+++++++.+.|+++|++||| ++|.+++|+++.|.+.++++|.+|+++|+||++++.++|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~lgi~~~~~~~~~T~~~~~~~~v~~~f~~L~~~G~iY~~~~~v~~----------------- 143 (338)
T cd00818 81 KCREFALRYVDEQEEQFQRLGVWVDWENPYKTMDPEYMESVWWVFKQLHEKGLLYRGYKVVPW----------------- 143 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHhCceecCCCCeECCCHHHHHHHHHHHHHHHHCCCEeccCCeeee-----------------
Confidence 68999999999999999999 566889999999999999999999999999999999999
Q ss_pred cCCCCCCCceEeeccccccchhHhHHHHHHHHhcCCCcccChHHHHHHHHHHhcCCCCcccccCCCCCCcccCC----CC
Q 046127 230 CCPIHLKPCVARKEDNYFFALSKYQKLLEDTLTENPDFVQPSFRLNEVQGWIKSGLRDFSISRASVDWGIPVPN----DN 305 (345)
Q Consensus 230 ~c~~~~~pve~r~~~~~f~~l~~~~~~L~e~l~~~~~~~~P~~~~~~~~~wl~~gL~D~~ISR~~~~WGIpvP~----~~ 305 (345)
|+++++++||||++++++++|.+++++. + +.|+.+++++.+||+ +|+||||||+ ..||||+|. ++
T Consensus 144 -------~v~~~~~~qwf~~l~~~~~~l~~~~~~~-~-~~P~~~~~~~~~~l~-~l~dw~iSR~-~~WGip~P~~~~~~~ 212 (338)
T cd00818 144 -------PLIYRATPQWFIRVTKIKDRLLEANDKV-N-WIPEWVKNRFGNWLE-NRRDWCISRQ-RYWGTPIPVWYCEDC 212 (338)
T ss_pred -------EEEEEecCeEEEEcHHHHHHHHHHHhcC-c-EECHHHHHHHHHHHh-cchhcceeee-cccCceeeEEEecCC
Confidence 8899999999999999999999999875 3 579999999999996 5999999997 699999995 33
Q ss_pred --------CCcEEEecCchhHHHHhcCCCCCCCchhhhhhCcCCCCC
Q 046127 306 --------KQTIYVWFDALLGYISALSEDRDQPSLRTAVSSGWPASL 344 (345)
Q Consensus 306 --------~~~iyVWfdal~gYls~~~~~~~~~~~~~~~~~~w~~~~ 344 (345)
++|+||||||+++|+++++...++ +.+..+||+++
T Consensus 213 ~~~~~~~~~~v~~vWfda~~~~~~~~~~~~~~----~~~~~~~p~d~ 255 (338)
T cd00818 213 GEVLVRRVPDVLDVWFDSGSMPYAQLHYPFEN----EDFEELFPADF 255 (338)
T ss_pred CeEEEecCCceEEEEEeCCCCHHHHcCCCCcc----hhhhccCCCeE
Confidence 889999999999999998765443 46889999874
|
Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. |
| >PRK13208 valS valyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-51 Score=438.13 Aligned_cols=262 Identities=23% Similarity=0.380 Sum_probs=232.0
Q ss_pred cccCCCCCCCC-CCCCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHh-CCCC
Q 046127 75 SYATNTDKSGT-EPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAAD-GGSS 152 (345)
Q Consensus 75 ~~~~~~~~~~~-~~~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~-~g~~ 152 (345)
|.....|...+ .++++|+|+.|||||||+|||||+++++++|+++||+||+|++|.+++|+|+||+||+.+|++ .|++
T Consensus 23 W~~~~~f~~~~~~~~~~f~i~~ppPy~nG~lHiGH~~~~~~~D~~~R~~r~~G~~v~~~~G~D~~Glpie~~~ek~~g~~ 102 (800)
T PRK13208 23 WEEEGTYKFDPDERKPVYSIDTPPPTVSGSLHIGHVFSYTHTDFIARYQRMRGYNVFFPQGWDDNGLPTERKVEKYYGIR 102 (800)
T ss_pred HHHCCCcccccccCCCcEEEecCcCCCCCCccHHHHHhHHHHHHHHHHHHcCCCcccCCCCcCCCcchHHHHHHHHhCCC
Confidence 44444453222 246889999999999999999999999999999999999999999999999999999999998 5887
Q ss_pred HH------------HHHHHHHHHHHHHHhhcCcccC--ccccCCChhhHHHHHHHHHHHHhCCCeeecccCcccccCCCC
Q 046127 153 PS------------EHCDVVSQAYKTLWKDLDIAYD--KFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLYCVNCEE 218 (345)
Q Consensus 153 p~------------~~~~~~~~~~~~~l~~lgI~~D--~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~~c~~ 218 (345)
++ ++++++.+.|+++|++||+++| ++++|+++.|.+.++++|.+|+++|+||++.++++|||.|++
T Consensus 103 ~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~lg~s~Dw~~~~~T~d~~~~~~v~~~f~~L~~~Gliy~~~~~v~wcp~~~t 182 (800)
T PRK13208 103 KDDISREEFIELCRELTDEDEKKFRELWRRLGLSVDWSLEYQTISPEYRRISQKSFLDLYKKGLIYRAEAPVLWCPRCET 182 (800)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCeeeccCCCcccCCHHHHHHHHHHHHHHHHCCCeeecCcccccCCCCCC
Confidence 76 5999999999999999999988 889999999999999999999999999999999999999999
Q ss_pred ccchhhhh------------------------------------------------------------------------
Q 046127 219 YKDEKELL------------------------------------------------------------------------ 226 (345)
Q Consensus 219 ~l~d~el~------------------------------------------------------------------------ 226 (345)
+|+|.|+.
T Consensus 183 ~Lsd~ev~~~~~~~~~~~ikf~~~~~~~l~v~TtrPeTl~g~~ai~v~p~~~~~~~l~g~~~~~P~~~~~ipii~~~~V~ 262 (800)
T PRK13208 183 AIAQAEVEYREREGKLNYIKFPVEDGEEIEIATTRPELLPACVAVVVHPDDERYKHLVGKTAIVPLFGVEVPILADPLVD 262 (800)
T ss_pred ccchhhhccccccceEEEEEEEecCCCEEEEEeCCcchhhhCeEEEECCCchHHHHhcCCEEEcCCCCCcceEECCCccC
Confidence 99998662
Q ss_pred ----------------------------------------------------------------------------cCCc
Q 046127 227 ----------------------------------------------------------------------------ENQC 230 (345)
Q Consensus 227 ----------------------------------------------------------------------------~~~~ 230 (345)
..++
T Consensus 263 ~~~GTG~V~~~p~hd~~D~~~~~~~~l~~~~~i~~~G~~~~~~g~~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~~~~p~ 342 (800)
T PRK13208 263 PDFGTGAVMICTFGDKTDVTWWRELNLPTRIIIDEDGRMTEAAGKLAGLTIEEARKKIVEDLKSGGLLGKQEPIKHNVKF 342 (800)
T ss_pred CCCCcceEEeCCCCCHHHHHHHHHcCCCcccccCCCceEecCCcccCCCCHHHHHHHHHHHHHhCCCeeceeeeeccCCc
Confidence 0157
Q ss_pred CCCCCCCceEeeccccccchhHhHHHHHHHHhcCCCcccChHHHHHHHHHHhcCCC-CcccccCCCCCCcccCC----C-
Q 046127 231 CPIHLKPCVARKEDNYFFALSKYQKLLEDTLTENPDFVQPSFRLNEVQGWIKSGLR-DFSISRASVDWGIPVPN----D- 304 (345)
Q Consensus 231 c~~~~~pve~r~~~~~f~~l~~~~~~L~e~l~~~~~~~~P~~~~~~~~~wl~~gL~-D~~ISR~~~~WGIpvP~----~- 304 (345)
|++||+|++.+.++||||+++++++++.+++++. .+.|+..++++.+||++ ++ ||||||| .+||+|||. +
T Consensus 343 ~~r~~~~v~~~~~~qwfl~~~~~~~~~~~~~~~~--~~~P~~~~~~~~~~l~~-~~~DW~ISRq-r~WG~pIP~~~~~~~ 418 (800)
T PRK13208 343 CERCDTPLEILVTRQWFIKVLDLKEELLERGKEI--NWYPEHMRVRLENWIEG-LNWDWCISRQ-RYFGTPIPVWYCKDC 418 (800)
T ss_pred cCCCCCEEEEeccceeeEeCHHHHHHHHHhhcCc--EEECHHHHHHHHHHHHh-cCCCceeeec-cccCCcceEEEeCCC
Confidence 9999999999999999999999999999999875 47899999999999985 66 9999999 599999993 0
Q ss_pred -----------------------------------CCCcEEEecCchhHHHHhcCCCCCCCchhhhhhCcCCCCC
Q 046127 305 -----------------------------------NKQTIYVWFDALLGYISALSEDRDQPSLRTAVSSGWPASL 344 (345)
Q Consensus 305 -----------------------------------~~~~iyVWfdal~gYls~~~~~~~~~~~~~~~~~~w~~~~ 344 (345)
+.+|++||||+.+.|++.++++.+. +.+..|||+|+
T Consensus 419 g~~~~~~~~~l~~~~~~d~~~~~~~~~~g~~~~~~~~dvlD~WfdS~~~~~~~~~~~~~~----~~~~~~~P~d~ 489 (800)
T PRK13208 419 GHPILPDEEDLPVDPTKDEPPGYKCPQCGSPGFEGETDVMDTWATSSITPLIVTGWERDE----DLFEKVFPMDL 489 (800)
T ss_pred CCeecCchhhhccCchhhccccccccccCCcCEEecCCEEEEEEeCCchHHHHhCCCCCh----hhhhhcCCceE
Confidence 1268999999999999988876542 56889999874
|
|
| >TIGR00422 valS valyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-51 Score=438.19 Aligned_cols=265 Identities=20% Similarity=0.286 Sum_probs=230.6
Q ss_pred ccccCCCCCCC-CCCCCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHh----
Q 046127 74 CSYATNTDKSG-TEPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAAD---- 148 (345)
Q Consensus 74 ~~~~~~~~~~~-~~~~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~---- 148 (345)
.|.....|... ..++++|+|+.||||+||.|||||+++++++|+++||+||+|++|++++|+|+||+||+..+++
T Consensus 17 ~W~~~~~f~~~~~~~~~~f~i~~ppPy~nG~lHiGH~~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek~~~~ 96 (861)
T TIGR00422 17 KWEKSGFFKPDGNSNKPPFCIDIPPPNVTGSLHIGHALNWSIQDIIARYKRMKGYNVLWLPGTDHAGIATQVKVEKKLGA 96 (861)
T ss_pred HHHHCCCcccCcccCCCeEEEEeCCCCCCCCCcHHHhHHHHHHHHHHHHHHhcCCcccCCCCcCcCCCcHHHHHHHHhcc
Confidence 35555555332 2356889999999999999999999999999999999999999999999999999999988875
Q ss_pred CCCCH------------HHHHHHHHHHHHHHHhhcCcccC--ccccCCChhhHHHHHHHHHHHHhCCCeeecccCccccc
Q 046127 149 GGSSP------------SEHCDVVSQAYKTLWKDLDIAYD--KFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLYCV 214 (345)
Q Consensus 149 ~g~~p------------~~~~~~~~~~~~~~l~~lgI~~D--~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~ 214 (345)
.|.++ .++++++.+.++++|++||+++| +.+.|+|+.|.+.|+++|.+|+++|+||++.++++|||
T Consensus 97 ~g~~~~~~~~e~f~~~~~~~~~~~~~~~~~~~~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~~GlIy~~~~~v~wcp 176 (861)
T TIGR00422 97 EGKTKHDLGREEFREKIWEWKEESGGTIKNQIKRLGASLDWSRERFTMDEGLSKAVKEAFVRLYEKGLIYRGEYLVNWDP 176 (861)
T ss_pred cCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCeeeecCCCcCcCCHHHHHHHHHHHHHHHHCCCeeecCcccccCC
Confidence 35555 36789999999999999999988 44669999999999999999999999999999999999
Q ss_pred CCCCccchhhhh--------------------------------------------------------------------
Q 046127 215 NCEEYKDEKELL-------------------------------------------------------------------- 226 (345)
Q Consensus 215 ~c~~~l~d~el~-------------------------------------------------------------------- 226 (345)
.|+++|++.|+.
T Consensus 177 ~~~t~lsd~Ev~~~~~~~~~~~i~f~~~~~~~~~l~vaTtrPeTl~~~~av~V~P~~~ry~~l~g~~~~~P~~~~~ipii 256 (861)
T TIGR00422 177 KLNTAISDIEVEYKEVKGKLYYIRYPLANGSKDYLVVATTRPETMFGDTAVAVHPEDERYKHLIGKKVILPLTGRKIPII 256 (861)
T ss_pred CCCCcchHhHhhcccccceEEEEEEEecCCCCCEEEEEeCCcchhhhCeEEEECCCchHHHHhcCCEEEcCCCCCcceee
Confidence 999999887620
Q ss_pred --------------------------------------------------------------------------------
Q 046127 227 -------------------------------------------------------------------------------- 226 (345)
Q Consensus 227 -------------------------------------------------------------------------------- 226 (345)
T Consensus 257 ~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~id~~G~~~~~~~~~~G~~~~~ar~~i~~~L~~~g~l~~~~~~ 336 (861)
T TIGR00422 257 ADEYVDMEFGTGAVKVTPAHDFNDYEWGKRHNLEFINILDEDGLLNENAGKYQGLTRFEARKKIVEDLKEEGLLVKIEPH 336 (861)
T ss_pred ecCCCCcccCCCceEecCCCChHHHHHHHHcCCCccceeCCCCeEcCCCcccCCcCHHHhHHHHHHHHHhCCCeeeeeee
Confidence
Q ss_pred --cCCcCCCCCCCceEeeccccccchhHhHHHHHHHHhcCCCcccChHHHHHHHHHHhcCCCCcccccCCCCCCcccCC-
Q 046127 227 --ENQCCPIHLKPCVARKEDNYFFALSKYQKLLEDTLTENPDFVQPSFRLNEVQGWIKSGLRDFSISRASVDWGIPVPN- 303 (345)
Q Consensus 227 --~~~~c~~~~~pve~r~~~~~f~~l~~~~~~L~e~l~~~~~~~~P~~~~~~~~~wl~~gL~D~~ISR~~~~WGIpvP~- 303 (345)
..++|++||.|+|.+.++||||+++++++++.++++++...+.|+.+++.+.+||+ +|+||||||| .+||+|||.
T Consensus 337 ~~~~p~~~R~g~~ve~~~~~qWFi~~~~~~~~~~~~~~~~~i~~~P~~~~~~~~~wl~-~l~DW~ISRq-~~WG~piP~w 414 (861)
T TIGR00422 337 THNVGTCWRSGTVVEPLLSKQWFVKVEKLADKALEAAEEGEIKFVPKRMEKRYLNWLR-NIKDWCISRQ-LIWGHRIPVW 414 (861)
T ss_pred eccCCEeCCCCCEEEEEecCcceEecHHHHHHHHHHhhcCCeEEEChHHHHHHHHHHh-ccccceeeee-cccCCcceEE
Confidence 12469999999999999999999999999999999854445789999999999997 5999999998 699999995
Q ss_pred --CC----------------------------CCcEEEecCchhHHHHhcCCCCCCCchhhhhhCcCCCCC
Q 046127 304 --DN----------------------------KQTIYVWFDALLGYISALSEDRDQPSLRTAVSSGWPASL 344 (345)
Q Consensus 304 --~~----------------------------~~~iyVWfdal~gYls~~~~~~~~~~~~~~~~~~w~~~~ 344 (345)
+. ..|+||||||.++|+++++++.+. ++|..|||+|+
T Consensus 415 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~dVlDtWFdS~l~~~s~~g~p~~~----~~~~~~~P~d~ 481 (861)
T TIGR00422 415 YCKECGEVYVAKEEPLPDDKTNTGPSVELEQDTDVLDTWFSSSLWPFSTLGWPDET----KDLKKFYPTDL 481 (861)
T ss_pred EECCCCcEEeccchHHhhhhhccCCcccEEECCCcccceeccchHHHHHhCCCCCh----HHHhhcCCcce
Confidence 21 368888999999999999987543 57899999874
|
The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase. |
| >PRK14900 valS valyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-51 Score=441.48 Aligned_cols=253 Identities=19% Similarity=0.314 Sum_probs=225.1
Q ss_pred CCCCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHh-----CCCCH-------
Q 046127 86 EPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAAD-----GGSSP------- 153 (345)
Q Consensus 86 ~~~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~-----~g~~p------- 153 (345)
.++++|+|+.||||+||.|||||++++++.|+++||+||+|++|++++|+|+||++++..+++ .|.++
T Consensus 45 ~~~~~f~i~~pPP~~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~vl~~~G~D~~Glp~e~~ve~~l~~~~~~~~~~~~~e~ 124 (1052)
T PRK14900 45 RTRPPFSIVLPPPNVTGSLHLGHALTATLQDVLIRWKRMSGFNTLWLPGTDHAGIATQMIVEKELKKTEKKSRHDLGREA 124 (1052)
T ss_pred CCCCCEEEecCCCCCCCcchHHHHHhhHHHHHHHHHHHhcCCcccCCCCCCccchHHHHHHHHHhhhccCCChhhCCHHH
Confidence 356889999999999999999999999999999999999999999999999999999887764 23333
Q ss_pred -----HHHHHHHHHHHHHHHhhcCcccC--ccccCCChhhHHHHHHHHHHHHhCCCeeecccCcccccCCCCccchhhhh
Q 046127 154 -----SEHCDVVSQAYKTLWKDLDIAYD--KFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLYCVNCEEYKDEKELL 226 (345)
Q Consensus 154 -----~~~~~~~~~~~~~~l~~lgI~~D--~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~~c~~~l~d~el~ 226 (345)
.++++++.+.|+++|++||+++| +.+.|+++.|...++++|.+|+++|+||++.++++|||.|+++|++.|+.
T Consensus 125 f~~~~~~~~~~~~~~~~~~~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F~~L~~~Gliyr~~~~v~wcp~~~T~Lsd~Ev~ 204 (1052)
T PRK14900 125 FLERVWAWKEQYGSRIGEQHKALGASLDWQRERFTMDEGLSRAVREVFVRLHEEGLIYREKKLINWCPDCRTALSDLEVE 204 (1052)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhchheecCCCcCcCCHHHHHHHHHHHHHHHHCCCEEeccceeccCCCCCCCccHHHhc
Confidence 24778999999999999999887 56679999999999999999999999999999999999999999874310
Q ss_pred --------------------------------------------------------------------------------
Q 046127 227 -------------------------------------------------------------------------------- 226 (345)
Q Consensus 227 -------------------------------------------------------------------------------- 226 (345)
T Consensus 205 ~~e~~~~~~~~i~f~l~~~~~~l~vaTTrPeTl~~~~avaV~P~~~~y~~L~G~~~~~Pl~~~~ipIi~d~~~vd~~~GT 284 (1052)
T PRK14900 205 HEEAHQGELWSFAYPLADGSGEIVVATTRPETMLGDTAVAVHPLDPRYMALHGKKVRHPITGRTFPIVADAILVDPKFGT 284 (1052)
T ss_pred ccCCCCCeEEEEEEEecCCCcEEEEEECchhhhhcceeEEECCCcHHHHHhcCCEEECCCCCCeeEEEecccccCcCCCC
Confidence
Q ss_pred -----------------------------------------------------------------------cCCcCCCCC
Q 046127 227 -----------------------------------------------------------------------ENQCCPIHL 235 (345)
Q Consensus 227 -----------------------------------------------------------------------~~~~c~~~~ 235 (345)
..++|++|+
T Consensus 285 G~V~~~Pahd~~D~~~~~~~~L~~~~~id~~G~~~~~~~~~~Gl~~~ear~~Ii~~L~~~g~l~~~~~~~h~~~~c~R~~ 364 (1052)
T PRK14900 285 GAVKVTPAHDFNDFEVGKRHGLEMITVIGPDGRMTAEAGPLAGLDRFEARKEVKRLLAEQGLDRGAKPHVLPLGRCQRSA 364 (1052)
T ss_pred CeEEecCCCChhHHHHHHHcCCCccceECCCcEEecCCcccCCcCHHHHHHHHHHHHHhCCCeecceeeeccCceeCCCC
Confidence 146799999
Q ss_pred CCceEeeccccccchhHhHHHHHHHHhcCCCcccChHHHHHHHHHHhcCCCCcccccCCCCCCcccCCC-----------
Q 046127 236 KPCVARKEDNYFFALSKYQKLLEDTLTENPDFVQPSFRLNEVQGWIKSGLRDFSISRASVDWGIPVPND----------- 304 (345)
Q Consensus 236 ~pve~r~~~~~f~~l~~~~~~L~e~l~~~~~~~~P~~~~~~~~~wl~~gL~D~~ISR~~~~WGIpvP~~----------- 304 (345)
+|++.+.++||||++++|+++++++++++...++|+.+++.+.+||+ +|+||||||| .+||+|||..
T Consensus 365 ~~ie~~~s~qWFi~l~~~k~~~~~~v~~~~~~~~P~~~~~~~~~wl~-~l~DW~ISRq-r~WG~PIP~w~~~~~~~~v~~ 442 (1052)
T PRK14900 365 TILEPLLSDQWYVRIEPLARPAIEAVEQGRTRFIPEQWTNTYMAWMR-NIHDWCISRQ-LWWGHQIPAWYCPDGHVTVAR 442 (1052)
T ss_pred ceEEEEeccceeeehHHHHHHHHHHHhcCCcEEEChHHHHHHHHHHh-cCccceEEee-cCCCceeCeEEcCCCcEEecc
Confidence 99999999999999999999999999875557899999999999997 6999999998 7999999952
Q ss_pred ----------------CCCcEEEecCchhHHHHhcCCCCCCCchhhhhhCcCCCCC
Q 046127 305 ----------------NKQTIYVWFDALLGYISALSEDRDQPSLRTAVSSGWPASL 344 (345)
Q Consensus 305 ----------------~~~~iyVWfdal~gYls~~~~~~~~~~~~~~~~~~w~~~~ 344 (345)
+.+|||||||++++|++.++++.+. +.+.+|||+|+
T Consensus 443 ~~~~~~~~~~~~~~~~~~dVlDvWFdS~l~y~s~~g~p~~~----~~~~~~~P~d~ 494 (1052)
T PRK14900 443 ETPEACSTCGKAELRQDEDVLDTWFSSGLWPFSTMGWPEQT----DTLRTFYPTSV 494 (1052)
T ss_pred cccccccccCccceecCCceEEEEEcCChHHHHHHcCCCch----HHHHhhCCchh
Confidence 3489999999999999999976542 56899999874
|
|
| >PRK05729 valS valyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-50 Score=428.61 Aligned_cols=264 Identities=18% Similarity=0.266 Sum_probs=226.8
Q ss_pred cccCCCCCCCCCCCCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHh----CC
Q 046127 75 SYATNTDKSGTEPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAAD----GG 150 (345)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~----~g 150 (345)
|....-|...+..+++|+|+.||||+||.|||||++++++.|+++||+||+|++|++++|+|+||++++.+.++ .|
T Consensus 22 W~~~~~f~~~~~~~~~f~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Gi~~e~~ve~~l~~~g 101 (874)
T PRK05729 22 WEEKGYFKPDDNSKKPFSIVIPPPNVTGSLHMGHALNNTLQDILIRYKRMQGYNTLWLPGTDHAGIATQMVVERQLAAEG 101 (874)
T ss_pred HHHCCCcccCcCCCCCEEEecCCCCCCCcchHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCccchhhHHHHHHHHHhcC
Confidence 44444453322345669999999999999999999999999999999999999999999999999987776544 36
Q ss_pred CCHHH------------HHHHHHHHHHHHHhhcCcccC--ccccCCChhhHHHHHHHHHHHHhCCCeeecccCcccccCC
Q 046127 151 SSPSE------------HCDVVSQAYKTLWKDLDIAYD--KFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLYCVNC 216 (345)
Q Consensus 151 ~~p~~------------~~~~~~~~~~~~l~~lgI~~D--~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~~c 216 (345)
+++.+ +++++.+.|+++|++||+++| +.+.|+|+.|...|+++|.+|+++|+||++.++++|||.|
T Consensus 102 ~~~~~~~re~f~~~~~~w~~~~~~~~~~~~~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~v~wcp~~ 181 (874)
T PRK05729 102 KSRHDLGREKFLEKVWEWKEESGGTITNQLRRLGASCDWSRERFTMDEGLSKAVREVFVRLYEKGLIYRGKRLVNWDPKL 181 (874)
T ss_pred CChHHCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcceecCCCcccCCHHHHHHHHHHHHHHHHCCCEeecCcccccCCCC
Confidence 66653 589999999999999999887 5577999999999999999999999999999999999999
Q ss_pred CCccchhhhh----------------------------------------------------------------------
Q 046127 217 EEYKDEKELL---------------------------------------------------------------------- 226 (345)
Q Consensus 217 ~~~l~d~el~---------------------------------------------------------------------- 226 (345)
+++|+|.|+.
T Consensus 182 ~talsd~EV~~~~~~~~~~~i~f~~~~~~~~l~vaTtrPeTl~~~~avaV~P~d~ry~~l~g~~~~~P~~~~~ipii~~~ 261 (874)
T PRK05729 182 QTALSDLEVEYKEVKGKLWHIRYPLADGSDYLVVATTRPETMLGDTAVAVNPEDERYKHLIGKTVILPLVGREIPIIADE 261 (874)
T ss_pred CCcchhhhcccccccceEEEEEEEecCCCcEEEEEeCCcchhhcCeeEeECCCccHHHHhcCCEEECCCCCCeeeEecCc
Confidence 9999986653
Q ss_pred -------------------------------------------------------------------------------c
Q 046127 227 -------------------------------------------------------------------------------E 227 (345)
Q Consensus 227 -------------------------------------------------------------------------------~ 227 (345)
.
T Consensus 262 ~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~i~~~G~~~~~~~~~~G~~~~~ar~~i~~~L~~~g~l~~~~~~~~~ 341 (874)
T PRK05729 262 YVDPEFGTGAVKITPAHDPNDFEVGKRHNLPMINIMDEDGTINENPGEYQGLDRFEARKAIVADLEELGLLVKIEPHTHS 341 (874)
T ss_pred cCCCCCCCcceEecCCCCHHHHHHHHHcCCCcccccCCCCeEcCCCcccCCCCHHHHHHHHHHHHHhCCCeeeeEEeecc
Confidence 0
Q ss_pred CCcCCCCCCCceEeeccccccchhHhHHHHHHHHhcCCCcccChHHHHHHHHHHhcCCCCcccccCCCCCCcccCC--CC
Q 046127 228 NQCCPIHLKPCVARKEDNYFFALSKYQKLLEDTLTENPDFVQPSFRLNEVQGWIKSGLRDFSISRASVDWGIPVPN--DN 305 (345)
Q Consensus 228 ~~~c~~~~~pve~r~~~~~f~~l~~~~~~L~e~l~~~~~~~~P~~~~~~~~~wl~~gL~D~~ISR~~~~WGIpvP~--~~ 305 (345)
.++|++||+|+|.+.++||||+++++++++.++++++...++|+..++.+.+||+ +++||||||| .+||+|||. .+
T Consensus 342 ~p~~~R~~~~i~~~~~~QWFi~~~~~~~~~~~~v~~~~i~~~P~~~~~~~~~wl~-~l~DWcISRq-~~WG~pIP~~~~~ 419 (874)
T PRK05729 342 VGHSDRSGVVIEPYLSDQWFVKMKPLAKPALEAVENGEIKFVPERWEKTYFHWME-NIQDWCISRQ-LWWGHRIPAWYDE 419 (874)
T ss_pred CCeeCCCCceEEEEecCcceEehHHHHHHHHHHHhcCCcEEEChHHHHHHHHHHh-cCccceeeee-cccCCcccEEEeC
Confidence 3569999999999999999999999999999999865556899999999999997 5999999998 799999992 11
Q ss_pred ----------------------CCcEEEecCchhHHHHhcCCCCCCCchhhhhhCcCCCCC
Q 046127 306 ----------------------KQTIYVWFDALLGYISALSEDRDQPSLRTAVSSGWPASL 344 (345)
Q Consensus 306 ----------------------~~~iyVWfdal~gYls~~~~~~~~~~~~~~~~~~w~~~~ 344 (345)
..|++||||+.+.|+++++++.+. +.+..|||+|+
T Consensus 420 ~~~~~v~~~~~~~~~~~~~~~~~DvlDtWfsS~l~~~~~lgwp~~~----~~~~~~~P~d~ 476 (874)
T PRK05729 420 DGEVYVGREEPEAREKALLTQDEDVLDTWFSSALWPFSTLGWPEKT----EDLKRFYPTSV 476 (874)
T ss_pred CCcEEeCCcccccccccCeEeCCceecceecCCccHHHHhCCCCCc----HHHHhcCCccc
Confidence 236667888899999999887542 66889999884
|
|
| >PLN02943 aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-49 Score=422.70 Aligned_cols=265 Identities=19% Similarity=0.264 Sum_probs=229.9
Q ss_pred cccCCCCCCCC-CCCCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHh----C
Q 046127 75 SYATNTDKSGT-EPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAAD----G 149 (345)
Q Consensus 75 ~~~~~~~~~~~-~~~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~----~ 149 (345)
|....-|...+ .++++|+|+.||||+||.|||||++++++.|+++||+||+|++|++++|+|+||++++.++++ .
T Consensus 73 W~~~~~f~~~~~~~~~~f~i~~pPP~~tG~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Gl~~e~~vek~l~~~ 152 (958)
T PLN02943 73 WESQGYFKPNFDRGGDPFVIPMPPPNVTGSLHMGHAMFVTLEDIMVRYNRMKGRPTLWIPGTDHAGIATQLVVEKMLASE 152 (958)
T ss_pred HHHCCCcccCcccCCCCEEEecCCCCCCCchhHHHHHHHHHHHHHHHHHHhcCCeeecCCCCCcccchhHHHHHHHHHHc
Confidence 55555554322 356779999999999999999999999999999999999999999999999999999886654 3
Q ss_pred CCCH------------HHHHHHHHHHHHHHHhhcCcccC--ccccCCChhhHHHHHHHHHHHHhCCCeeecccCcccccC
Q 046127 150 GSSP------------SEHCDVVSQAYKTLWKDLDIAYD--KFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLYCVN 215 (345)
Q Consensus 150 g~~p------------~~~~~~~~~~~~~~l~~lgI~~D--~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~~ 215 (345)
|+++ .++++++.+.|+++|++||+++| +.+.|+++.|...++++|.+|+++|+||++.++++|||.
T Consensus 153 ~~~~~~~~re~f~~~~~~~~~~~~~~~~~~~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F~~l~~~Gliyr~~~~V~wcp~ 232 (958)
T PLN02943 153 GIKRTDLGRDEFTKRVWEWKEKYGGTITNQIKRLGASCDWSRERFTLDEQLSRAVVEAFVRLHEKGLIYQGSYMVNWSPN 232 (958)
T ss_pred CCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcceecCCCcccCCHHHHHHHHHHHHHHHHCCCEEecCceeccCCC
Confidence 5544 35668889999999999999877 678899999999999999999999999999999999999
Q ss_pred CCCccchhhhh---------------------------------------------------------------------
Q 046127 216 CEEYKDEKELL--------------------------------------------------------------------- 226 (345)
Q Consensus 216 c~~~l~d~el~--------------------------------------------------------------------- 226 (345)
|+|.|++.|+.
T Consensus 233 ~~Tals~~Evey~e~~~~~~~i~f~l~~~~~~~l~vaTTrPeTl~~~~avavnP~d~ry~~l~g~~~~~Pl~~~~~ipii 312 (958)
T PLN02943 233 LQTAVSDLEVEYSEEPGTLYYIKYRVAGGSEDFLTIATTRPETLFGDVAIAVNPEDDRYSKYIGKMAIVPMTYGRHVPII 312 (958)
T ss_pred CCCCcCHHHhhcccccccEEEEEEEEcCCCCCEEEEEeCChhhhhcceEEEECCCCHHHHHHcCCEEECCCcCCCeeeEE
Confidence 99999874310
Q ss_pred ------------------------------------------------------------------------------cC
Q 046127 227 ------------------------------------------------------------------------------EN 228 (345)
Q Consensus 227 ------------------------------------------------------------------------------~~ 228 (345)
..
T Consensus 313 ~~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~~id~~G~~~~~~g~~~~ear~~iv~~L~~~g~l~~~e~~~~~~ 392 (958)
T PLN02943 313 ADRYVDKDFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLYWFEAREKLWSDLEETGLAVKKEPHTLRV 392 (958)
T ss_pred ecCcccCCCCCceEEeCCCCChHHHHHHHHcCCCceeeeCCCceeeccCCccHHHHHHHHHHHHHHCCCeeeeeeeecCC
Confidence 03
Q ss_pred CcCCCCCCCceEeeccccccchhHhHHHHHHHHhcCCCcccChHHHHHHHHHHhcCCCCcccccCCCCCCcccCC-----
Q 046127 229 QCCPIHLKPCVARKEDNYFFALSKYQKLLEDTLTENPDFVQPSFRLNEVQGWIKSGLRDFSISRASVDWGIPVPN----- 303 (345)
Q Consensus 229 ~~c~~~~~pve~r~~~~~f~~l~~~~~~L~e~l~~~~~~~~P~~~~~~~~~wl~~gL~D~~ISR~~~~WGIpvP~----- 303 (345)
++|++|++|+|.+.++|||++++++++++.++++++...+.|+..++.+.+||+ +++||||||| .+||+|||.
T Consensus 393 p~c~R~~~~Ie~~~~~QWFi~~~~l~~~~l~~v~~~~i~~~P~~~~~~~~~wl~-~l~DWcISRQ-r~WG~pIP~w~~~~ 470 (958)
T PLN02943 393 PRSQRGGEVIEPLVSKQWFVTMEPLAEKALKAVENGELTIIPERFEKIYNHWLS-NIKDWCISRQ-LWWGHRIPVWYIVG 470 (958)
T ss_pred CeeCCCCcEeEEEeccceeEEHHHHHHHHHHHHhcCCcEEEChHHHHHHHHHHh-cCccceEEEe-cCCCCccCceeccc
Confidence 569999999999999999999999999999999865456899999999999997 7999999999 799999994
Q ss_pred -C------------------------------CCCcEEEecCchhHHHHhcCCCCCCCchhhhhhCcCCCCC
Q 046127 304 -D------------------------------NKQTIYVWFDALLGYISALSEDRDQPSLRTAVSSGWPASL 344 (345)
Q Consensus 304 -~------------------------------~~~~iyVWfdal~gYls~~~~~~~~~~~~~~~~~~w~~~~ 344 (345)
+ +.+|+|||||+.+.|++.++++... .+.+..|||+|+
T Consensus 471 ~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~DVlDtWFdS~l~p~s~lgwp~~~---~~~~~~~yP~dl 539 (958)
T PLN02943 471 KDCEEDYIVARSAEEALEKAREKYGKDVEIYQDPDVLDTWFSSALWPFSTLGWPDVS---AEDFKKFYPTTV 539 (958)
T ss_pred cCCCceEEecCcHHHHHHHhhhhcCCchheeecCceEEEEEcCccchHHhcCCCccC---hHHHhccCCCeE
Confidence 1 3589999999999999999976421 267889999874
|
|
| >cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-48 Score=373.63 Aligned_cols=214 Identities=33% Similarity=0.581 Sum_probs=200.7
Q ss_pred CEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCC-------------CHHHH
Q 046127 90 PFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGS-------------SPSEH 156 (345)
Q Consensus 90 ~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~-------------~p~~~ 156 (345)
+|+|++|||||||++||||+++++++|+++||+|++|++|.+++|+|+||++|+.+|++.+. +++++
T Consensus 1 ~~~i~~~pP~~~g~~HiGH~~~~i~~D~i~R~~r~~G~~v~~~~g~D~~g~~i~~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (312)
T cd00668 1 KFYVTTPPPYANGSLHLGHALTHIIADFIARYKRMRGYEVPFLPGWDTHGLPIELKAERKGGRKKKTIWIEEFREDPKEF 80 (312)
T ss_pred CEEEecCCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCCCCCccCCCCHHHHHHHHHhcCcccccccHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999887 88999
Q ss_pred HHHHHHHHHHHHhhcCcccC--ccccCCChhhHHHHHHHHHHHHhCCCeeecccCcccccCCCCccchhhhhcCCcCCCC
Q 046127 157 CDVVSQAYKTLWKDLDIAYD--KFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLYCVNCEEYKDEKELLENQCCPIH 234 (345)
Q Consensus 157 ~~~~~~~~~~~l~~lgI~~D--~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~~c~~~l~d~el~~~~~c~~~ 234 (345)
|+++.+.|+++|++|||++| .+++|+++.|.+.++++|.+|.++|+||++.+++
T Consensus 81 ~~~~~~~~~~~l~~lgI~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~G~iY~~~~~v------------------------ 136 (312)
T cd00668 81 VEEMSGEHKEDFRRLGISYDWSDEYITTEPEYSKAVELIFSRLYEKGLIYRGTHPV------------------------ 136 (312)
T ss_pred HHHHHHHHHHHHHHhCccccCCCCeECCCHHHHHHHHHHHHHHHHCCCEEeeccee------------------------
Confidence 99999999999999999998 9999999999999999999999999999998866
Q ss_pred CCCceEeeccccccchhHhHHHHHHHHhcCCCcccChHHHHHHHHHHhcCCCCcccccCCCCCCcccCCCCCCcEEEecC
Q 046127 235 LKPCVARKEDNYFFALSKYQKLLEDTLTENPDFVQPSFRLNEVQGWIKSGLRDFSISRASVDWGIPVPNDNKQTIYVWFD 314 (345)
Q Consensus 235 ~~pve~r~~~~~f~~l~~~~~~L~e~l~~~~~~~~P~~~~~~~~~wl~~gL~D~~ISR~~~~WGIpvP~~~~~~iyVWfd 314 (345)
+.++||||+++++++++.+++++.. ++|+..++++.+||++++ ||||||+ .+||+|+| +++||||||
T Consensus 137 ------~~~~~~f~~~~~l~~~~~~~~~~~~--~~p~~~~~~~~~~l~~~~-d~~isR~-~~WG~~~P---~~~i~~Wfd 203 (312)
T cd00668 137 ------RITEQWFFDMPKFKEKLLKALRRGK--IVPEHVKNRMEAWLESLL-DWAISRQ-RYWGTPLP---EDVFDVWFD 203 (312)
T ss_pred ------EeeeeEEEEcHHHHHHHHHHHhcCC--cCChHHHHHHHHHHhCCC-CeEEecc-CCCCCcCC---cccccchhh
Confidence 7889999999999999999998874 689988999999999876 9999998 69999999 799999999
Q ss_pred chhHHHHhcCCCCCCCchhhhhhCcCCCCC
Q 046127 315 ALLGYISALSEDRDQPSLRTAVSSGWPASL 344 (345)
Q Consensus 315 al~gYls~~~~~~~~~~~~~~~~~~w~~~~ 344 (345)
|+++|++++++..+. +.+.++||.|+
T Consensus 204 s~~~~~~~~~~~~~~----~~~~~~~~~di 229 (312)
T cd00668 204 SGIGPLGSLGYPEEK----EWFKDSYPADW 229 (312)
T ss_pred ccHHHHHHcCCCccc----hhhhhcCCceE
Confidence 999999999877653 46888999874
|
Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function. |
| >PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-48 Score=417.25 Aligned_cols=252 Identities=22% Similarity=0.307 Sum_probs=224.6
Q ss_pred CCCCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhC-CCC------------
Q 046127 86 EPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADG-GSS------------ 152 (345)
Q Consensus 86 ~~~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~-g~~------------ 152 (345)
.++++|+|+.|||||||.|||||++++++.|+++||+||+||+|.++.|||+||+||+..+++. |++
T Consensus 38 ~~~~~f~i~~~PPy~nG~lH~GH~l~~t~kD~i~Ry~rm~G~~v~~~~GwD~~GlPie~~vek~l~~~~~~~i~~~g~~~ 117 (975)
T PRK06039 38 EGGPEFVFYDGPPTANGLPHYGHLLTRTIKDVVPRYKTMKGYKVERRAGWDTHGLPVELEVEKELGISGKKDIEEYGIEK 117 (975)
T ss_pred CCCCCEEEeCCCCCCCCCccHhhhHhhHHHHHHHHHHHhCCCcccCcCCcCCCccHHHHHHHHHhCcccccchhhcCHHH
Confidence 4568899999999999999999999999999999999999999999999999999999999873 654
Q ss_pred ----HHHHHHHHHHHHHHHHhhcCcccC--ccccCCChhhHHHHHHHHHHHHhCCCeeecccCcccccCCCCccchhhh-
Q 046127 153 ----PSEHCDVVSQAYKTLWKDLDIAYD--KFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLYCVNCEEYKDEKEL- 225 (345)
Q Consensus 153 ----p~~~~~~~~~~~~~~l~~lgI~~D--~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~~c~~~l~d~el- 225 (345)
++++++++.+.+++++++||+++| +.+.|+++.|.+.++++|.+|+++|+||++.++++|||.|+|.|++.|+
T Consensus 118 f~~~c~~~~~~~~~~~~~~~~rlG~~~Dw~~~y~T~d~~y~~~v~~~F~~l~~kGliyr~~~~v~wcp~~~T~Ls~~Ev~ 197 (975)
T PRK06039 118 FNEKCRESVLRYTDEWEEYTERLGRWVDFDNPYKTLDNEYMESVWWALKQLYDKGLLYKGYRVVPYCPRCETPLSNHEVA 197 (975)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCceeecCCCcCcCCHHHHHHHHHHHHHHHHCCCEEecceeeeecCCCCCCccHHHHh
Confidence 568999999999999999997655 7888999999999999999999999999999999999999999975210
Q ss_pred --------------------------------------------------------------------------------
Q 046127 226 -------------------------------------------------------------------------------- 225 (345)
Q Consensus 226 -------------------------------------------------------------------------------- 225 (345)
T Consensus 198 ~~y~~~~~~~~~v~f~l~~~~~~~l~i~TTrP~Tl~~n~avaV~P~~~Y~~~~~~~~~yi~a~~~~~~~~~~~~~~~~~~ 277 (975)
T PRK06039 198 QGYKDVKDPSVYVKFKLKGEENEYLLAWTTTPWTLPSNLALAVHPDIDYVKVEGGGEVYILAEALLEKVLKEDYEVVETF 277 (975)
T ss_pred hcccccCCceEEEEEEecCCCCCEEEEEECCccccccceEEEECCCCceEEEecCCeEEEEhHHHHHHHhhcccEEEeee
Confidence
Q ss_pred -----------------------h--------------------------------------------------------
Q 046127 226 -----------------------L-------------------------------------------------------- 226 (345)
Q Consensus 226 -----------------------~-------------------------------------------------------- 226 (345)
+
T Consensus 278 ~G~~L~G~~~~~P~~~~~~~~~~~pii~~~~V~~~~GTG~V~~aPahg~~D~~~~~~~~l~~~~~id~~G~~~~~~~~~~ 357 (975)
T PRK06039 278 KGSELEGLEYEPPFPYFADEKNAFRVVLADFVTTEDGTGIVHIAPAFGEDDFEVGKKYGLPVVCPVDDDGRFTEEVPDYA 357 (975)
T ss_pred cCccccCCEEECCcccccCCcceeEEEecCccCCCCCccceeeCCCCChHHHHHHHHcCCCccceeCCCceEcCCCcccc
Confidence 0
Q ss_pred -----------------------------cCCcCCCCCCCceEeeccccccchhHhHHHHHHHHhcCCCcccChHHHH-H
Q 046127 227 -----------------------------ENQCCPIHLKPCVARKEDNYFFALSKYQKLLEDTLTENPDFVQPSFRLN-E 276 (345)
Q Consensus 227 -----------------------------~~~~c~~~~~pve~r~~~~~f~~l~~~~~~L~e~l~~~~~~~~P~~~~~-~ 276 (345)
..++|++||+|++++.++|||++++++++++++++++. .+.|+.+++ +
T Consensus 358 G~~v~eA~~~Ii~~L~~~g~l~~~~~~~h~~p~c~R~g~pv~~~~~~qWFi~~~~~k~~ll~~~~~i--~~~P~~~~~~~ 435 (975)
T PRK06039 358 GKFVKDADKEIIRDLKERGLLFKAETYEHSYPHCWRCDTPLIYYATESWFIRVTKIKDRMLELNQKI--NWYPEHIKDGR 435 (975)
T ss_pred CCCHHHhhHHHHHHHHhCCCEeeeeeecCCCCEeCCCCCEEEEEecCeeeEecHHHHHHHHHhhCCe--EEECcccchhh
Confidence 14679999999999999999999999999999999875 468999988 9
Q ss_pred HHHHHhcCCCCcccccCCCCCCcccCC----CC----------------------------------------------C
Q 046127 277 VQGWIKSGLRDFSISRASVDWGIPVPN----DN----------------------------------------------K 306 (345)
Q Consensus 277 ~~~wl~~gL~D~~ISR~~~~WGIpvP~----~~----------------------------------------------~ 306 (345)
+.+||+ +++||||||| .+||+|||. +. .
T Consensus 436 ~~~wl~-~l~DW~ISRq-r~WG~PIPiw~~~~~g~~~v~~~~~el~~~~g~~~~~~~l~~~~~d~~~~~~~~~~~~~r~~ 513 (975)
T PRK06039 436 FGKWLE-NARDWNISRN-RYWGTPLPIWRCEDCGRIDVIGSIEELEELFGEDVEPIDLHRPYVDEVTLPCPDGGTMRRVP 513 (975)
T ss_pred HHHHHh-cCccceeeec-cccCCcceEEEecCCCeEEEeccHHHHHHHhCCCcchhhhcccccccccccCCCCcceEecc
Confidence 999997 5999999998 699999994 21 2
Q ss_pred CcEEEecCchhHHHHhcCCCCCCCchhhhhhCcCCCCC
Q 046127 307 QTIYVWFDALLGYISALSEDRDQPSLRTAVSSGWPASL 344 (345)
Q Consensus 307 ~~iyVWfdal~gYls~~~~~~~~~~~~~~~~~~w~~~~ 344 (345)
+|+|||||+.+.|++.++++.+. .+.|..+||+|+
T Consensus 514 dVlDvWFdSg~~p~a~~~~p~~~---~~~f~~~~Pad~ 548 (975)
T PRK06039 514 DVIDVWFDSGSMPYAQLHYPFEN---KEWFEKHFPADF 548 (975)
T ss_pred ccccceeecCCccHHHhCCcccC---hhhhhccCCceE
Confidence 79999999999999999887542 256888999984
|
|
| >PTZ00419 valyl-tRNA synthetase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-47 Score=413.12 Aligned_cols=253 Identities=20% Similarity=0.302 Sum_probs=224.1
Q ss_pred CCCCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHh-----CCCCH-------
Q 046127 86 EPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAAD-----GGSSP------- 153 (345)
Q Consensus 86 ~~~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~-----~g~~p------- 153 (345)
.++++|+|+.|||||||.|||||+++++++|+++||+||+|++|.+++|+|+||++++...++ .|.++
T Consensus 57 ~~~~~f~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~v~~~~G~D~~Gl~~~~~vE~~l~~~~~~~~~~~~~e~ 136 (995)
T PTZ00419 57 NSGKKFVIVLPPPNVTGYLHIGHALTGAIQDSLIRYHRMKGDETLWVPGTDHAGIATQVVVEKKLMKEENKTRHDLGREE 136 (995)
T ss_pred CCCCeEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCCchhhHHHHHHHHHHhcCCChHHcCHHH
Confidence 356889999999999999999999999999999999999999999999999999999766543 45443
Q ss_pred -----HHHHHHHHHHHHHHHhhcCcccC--ccccCCChhhHHHHHHHHHHHHhCCCeeecccCcccccCCCCccchhhhh
Q 046127 154 -----SEHCDVVSQAYKTLWKDLDIAYD--KFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLYCVNCEEYKDEKELL 226 (345)
Q Consensus 154 -----~~~~~~~~~~~~~~l~~lgI~~D--~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~~c~~~l~d~el~ 226 (345)
.++++++.+.|+++|++||+++| +++.|+++.|...++++|.+|+++|+||++.++++|||.|+|.|++.|+.
T Consensus 137 f~~~~~~w~~~~~~~~~~~~~~lG~~~DW~~~~~T~d~~~~~~v~~~F~~l~~~Gliyr~~~~V~wcp~~~Talsd~EVe 216 (995)
T PTZ00419 137 FLKKVWEWKDKHGNNICNQLRRLGSSLDWSREVFTMDEQRSKAVKEAFVRLYEDGLIYRDTRLVNWCCYLKTAISDIEVE 216 (995)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCceeeCCCCcCcCCHHHHHHHHHHHHHHHHCCCEEecceeeecCCCCCCCCchhhcc
Confidence 36789999999999999999887 88899999999999999999999999999999999999999887653210
Q ss_pred --------------------------------------------------------------------------------
Q 046127 227 -------------------------------------------------------------------------------- 226 (345)
Q Consensus 227 -------------------------------------------------------------------------------- 226 (345)
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~g~l~~i~f~l~~~~~~~l~vaTTrPeTl~g~~avav~P~d~~y~~l~G~~~~~Pl~~~~ 296 (995)
T PTZ00419 217 FEEIEKPTKITIPGYDKKVEVGVLWHFAYPLEDSGQEEIVVATTRIETMLGDVAVAVHPKDERYKKLHGKELIHPFIPDR 296 (995)
T ss_pred cccccccceeeccccccccccceeEEEEEeecCCCCcEEEEEeCCcchhhhCeEEEECCCCcHHHHhcCCEEECCccCCC
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 046127 227 -------------------------------------------------------------------------------- 226 (345)
Q Consensus 227 -------------------------------------------------------------------------------- 226 (345)
T Consensus 297 ~ipii~~~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~~i~~~G~~~~~~~~~~Gl~~~~ar~~ii~~L~~~g~l 376 (995)
T PTZ00419 297 KIPIIADDELVDMEFGTGAVKITPAHDPNDYEIAKRHNLPFINIFTLDGKINENGGEFAGMHRFDCRRKIEEELKEMGLL 376 (995)
T ss_pred EEEEEeCCcccCCCcCCCCeEeCCCCChHHHHHHHHcCCCeeeeeCCCceEcCCCcccCCCCHHHHHHHHHHHHHhcCCE
Confidence
Q ss_pred --------cCCcCCCCCCCceEeeccccccchhHhHHHHHHHHhcCCCcccChHHHHHHHHHHhcCCCCcccccCCCCCC
Q 046127 227 --------ENQCCPIHLKPCVARKEDNYFFALSKYQKLLEDTLTENPDFVQPSFRLNEVQGWIKSGLRDFSISRASVDWG 298 (345)
Q Consensus 227 --------~~~~c~~~~~pve~r~~~~~f~~l~~~~~~L~e~l~~~~~~~~P~~~~~~~~~wl~~gL~D~~ISR~~~~WG 298 (345)
..++|+||+.|+|.+.++|||++++++++++.+.+++++..+.|+.+++++.+||+ +++||||||| .+||
T Consensus 377 ~~~~~~~~~~p~~~R~~~~ie~~~~~QWFi~~~~~~~~al~~v~~~~i~~~P~~~~~~~~~wl~-~l~DWcISRQ-r~WG 454 (995)
T PTZ00419 377 RDKVPNPMRLPRCSRSGDIVEPMLIPQWYVNCKDMAKRAVEAVRNGELKIIPSSHENVWYHWLE-NIQDWCISRQ-LWWG 454 (995)
T ss_pred EeeEEeecCCCEeCCCCCEEEEEecCeeeEecHHHHHHHHHHhhcCCeEEEChHHHHHHHHHHh-ccccceeeee-cccC
Confidence 13679999999999999999999999999999999866667899999999999997 5999999998 7999
Q ss_pred cccCCC---------------------------------------------CCCcEEEecCchhHHHHhcCCCCCCCchh
Q 046127 299 IPVPND---------------------------------------------NKQTIYVWFDALLGYISALSEDRDQPSLR 333 (345)
Q Consensus 299 IpvP~~---------------------------------------------~~~~iyVWfdal~gYls~~~~~~~~~~~~ 333 (345)
+|||.. +.+|+|||||+.+.|++.++++.+.
T Consensus 455 ~pIP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DVlDtWFdS~l~p~~~~g~p~~~---- 530 (995)
T PTZ00419 455 HRIPAYRVISKGPETDPSDEEPWVVARSEEEALEKAKKKFGLSEEDFELEQDEDVLDTWFSSGLFPFSTLGWPDQT---- 530 (995)
T ss_pred ceeeEEEeCCCCccccCCCCceEEEcCCHHHHHhhhccccCCccccCCeEECCceEEEEEeCCHHHHHHhCCCCCh----
Confidence 999951 1289999999999999999887543
Q ss_pred hhhhCcCCCCC
Q 046127 334 TAVSSGWPASL 344 (345)
Q Consensus 334 ~~~~~~w~~~~ 344 (345)
+++..|||+|+
T Consensus 531 ~~~~~~~P~d~ 541 (995)
T PTZ00419 531 DDLQRFFPTSL 541 (995)
T ss_pred HHHhhcCCCcE
Confidence 56889999985
|
|
| >cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-46 Score=361.16 Aligned_cols=216 Identities=23% Similarity=0.362 Sum_probs=198.0
Q ss_pred CEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Q 046127 90 PFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWK 169 (345)
Q Consensus 90 ~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~ 169 (345)
+++||+|||||||++||||+++++.+|+++||+|++|++|.+++|+|+||+||+.+|++.|++++++++++.+.|+++|+
T Consensus 1 k~~it~~~Py~ng~~HiGH~~~~v~~Dv~~R~lr~~G~~V~~v~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~~~ 80 (314)
T cd00812 1 KFYILVMFPYPSGALHVGHVRTYTIGDIIARYKRMQGYNVLFPMGFDAFGLPAENAAIKIGRDPEDWTEYNIKKMKEQLK 80 (314)
T ss_pred CeEEecCCCCCCCCccccchHHHHHHHHHHHHHHHcCCCcCCCCCcCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCcccC--ccccCCChhhHHHHHHHHHHHHhCCCeeecccCcccccCCCCccchhhhhcCCcCCCCCCCceEeeccccc
Q 046127 170 DLDIAYD--KFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLYCVNCEEYKDEKELLENQCCPIHLKPCVARKEDNYF 247 (345)
Q Consensus 170 ~lgI~~D--~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~~c~~~l~d~el~~~~~c~~~~~pve~r~~~~~f 247 (345)
+|||++| .+++|+++.|.+.++++|.+|.++|+||++++.++|| ++++|||
T Consensus 81 ~lgi~~d~~~~~~t~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~---------------------------~~~~~~f 133 (314)
T cd00812 81 RMGFSYDWRREFTTCDPEYYKFTQWLFLKLYEKGLAYKKEAPVNWC---------------------------KLLDQWF 133 (314)
T ss_pred HhccceecccccccCCHHHHHHHHHHHHHHHHCCCEEecCceeeee---------------------------CccceEE
Confidence 9999998 6788999999999999999999999999999999999 7789999
Q ss_pred cch--hHhHHHHHHHHhcCCCcccChHHHHHHHHHHhcCCCCcccccCCCCCCcccCCCCCCcEEEecCchh---HHHHh
Q 046127 248 FAL--SKYQKLLEDTLTENPDFVQPSFRLNEVQGWIKSGLRDFSISRASVDWGIPVPNDNKQTIYVWFDALL---GYISA 322 (345)
Q Consensus 248 ~~l--~~~~~~L~e~l~~~~~~~~P~~~~~~~~~wl~~gL~D~~ISR~~~~WGIpvP~~~~~~iyVWfdal~---gYls~ 322 (345)
|++ ++|+++|.+++++.. ++|+..++.+.+||+ |||+ .+||||+|. +++||||||+++ +|+++
T Consensus 134 ~~l~~~~~~~~l~~~l~~~~--~~p~~~~~~~~~~l~-------isR~-~~wGipvP~--~~~i~~w~ds~~y~~~y~~~ 201 (314)
T cd00812 134 LKYSETEWKEKLLKDLEKLD--GWPEEVRAMQENWIG-------CSRQ-RYWGTPIPW--TDTMESLSDSTWYYARYTDA 201 (314)
T ss_pred EEcCcHHHHHHHHHHHHhcC--cCCHHHHHHHHHHhe-------eeee-cCCcCCcCc--ccccccccccHHHHHHHHhc
Confidence 999 999999999998863 589999999999995 9997 799999997 799999999997 88887
Q ss_pred cCCCCCCC----chhhhhhCcCCCCC
Q 046127 323 LSEDRDQP----SLRTAVSSGWPASL 344 (345)
Q Consensus 323 ~~~~~~~~----~~~~~~~~~w~~~~ 344 (345)
........ ...+.+..|||.|+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~w~p~di 227 (314)
T cd00812 202 HNLEQPYEGDLEFDREEFEYWYPVDI 227 (314)
T ss_pred ccccCcchhhhhhhHHHHHHhCCCee
Confidence 76543310 12356888999764
|
Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. |
| >COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-46 Score=389.18 Aligned_cols=267 Identities=21% Similarity=0.333 Sum_probs=231.8
Q ss_pred ccccccCCCCCCCCCCC-CCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHh--
Q 046127 72 VFCSYATNTDKSGTEPA-DPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAAD-- 148 (345)
Q Consensus 72 ~~~~~~~~~~~~~~~~~-~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~-- 148 (345)
...|...+-|+..++.. ++|+|..||||+||.||||||.+.++.|+++||.||+||+|+++.|+|++|.+++...++
T Consensus 15 ~~~W~~~~~f~~~~~~~~~~f~I~~PPPNVTG~LHmGHAl~~tl~D~l~RykRM~G~~vl~~pG~DhAGIaTq~~VEk~l 94 (877)
T COG0525 15 YKKWEESGYFKPDPNEDKPPFSIDTPPPNVTGSLHMGHALNYTLQDILARYKRMRGYNVLWPPGTDHAGIATQVVVEKQL 94 (877)
T ss_pred HHHHHhcCCccCCCCCCCCCcEEeCCCCCCCCcccchhhhhHHHHHHHHHHHHcCCCeeecCCCCCCCCchHHHHHHHHH
Confidence 33455555665443333 669999999999999999999999999999999999999999999999999999888875
Q ss_pred --CCCCH------------HHHHHHHHHHHHHHHhhcCcccC--ccccCCChhhHHHHHHHHHHHHhCCCeeecccCccc
Q 046127 149 --GGSSP------------SEHCDVVSQAYKTLWKDLDIAYD--KFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLY 212 (345)
Q Consensus 149 --~g~~p------------~~~~~~~~~~~~~~l~~lgI~~D--~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~~~y 212 (345)
.|++. .+|.+++...|+++|++||+++| ..+.|+|+.+...|+++|.+|+++|+||++++.+.|
T Consensus 95 ~~~g~~r~d~gRe~Fl~~~weWk~e~~~~I~~Q~~rLG~S~DWsrE~fTmD~~~s~av~~~Fv~Ly~~GlIYr~~~lVNW 174 (877)
T COG0525 95 AAEGITRHDLGREEFLKKCWEWKEESGGTIREQLRRLGVSVDWSRERFTMDPGLSRAVQEAFVRLYEKGLIYRGERLVNW 174 (877)
T ss_pred HHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCHHHHHHHHHHHHHHHHCCceeecCCcccC
Confidence 25443 26778889999999999999988 566799999999999999999999999999999999
Q ss_pred ccCCCCccchhhhh------------------------------------------------------------------
Q 046127 213 CVNCEEYKDEKELL------------------------------------------------------------------ 226 (345)
Q Consensus 213 c~~c~~~l~d~el~------------------------------------------------------------------ 226 (345)
||.|+|.+||.|++
T Consensus 175 cP~~~TAiSd~EVe~~e~~g~L~~i~y~l~~~~~~i~VATTRPEtmlgdtAVaVhP~DeRYk~LvGk~v~lPl~~r~IpI 254 (877)
T COG0525 175 CPKCRTAISDIEVEYKEVEGKLYYIKYPLADGDGYLVVATTRPETLLGDTAVAVHPDDERYKHLVGKEVILPLVGREIPI 254 (877)
T ss_pred CCccccchhhhhhccceeeeeEEEEEEecCCCCceEEEEecCccccccceEEEECCCChhhHhhcCCEEecCCCCCeeee
Confidence 99999999884310
Q ss_pred --------------------------------------------------------------------------------
Q 046127 227 -------------------------------------------------------------------------------- 226 (345)
Q Consensus 227 -------------------------------------------------------------------------------- 226 (345)
T Consensus 255 iaD~~VD~eFGTG~VkItpahD~nD~e~~krh~Lp~i~i~d~dG~in~~~~~~~~Gl~r~eAR~kIv~~L~~~GlLvk~e 334 (877)
T COG0525 255 IADEYVDPEFGTGAVKITPAHDFNDYEVGKRHNLPLINIIDEDGRINEEAAGEFAGLDRFEARKKIVEDLEEQGLLVKIE 334 (877)
T ss_pred ecCcccCCcCCCceEEecCCCCchhhhhhhcCCCCceEEECCCCeeccCCccccCCCcHHHHHHHHHHHHHhCCCeEeee
Confidence
Q ss_pred ----cCCcCCCCCCCceEeeccccccchhHhHHHHHHHHhcCCCcccChHHHHHHHHHHhcCCCCcccccCCCCCCcccC
Q 046127 227 ----ENQCCPIHLKPCVARKEDNYFFALSKYQKLLEDTLTENPDFVQPSFRLNEVQGWIKSGLRDFSISRASVDWGIPVP 302 (345)
Q Consensus 227 ----~~~~c~~~~~pve~r~~~~~f~~l~~~~~~L~e~l~~~~~~~~P~~~~~~~~~wl~~gL~D~~ISR~~~~WGIpvP 302 (345)
..++|+|||.|+|..-++|||+++..+++.+.+..+++...+.|+.+.+.+.+|++ +++||||||| .+||++||
T Consensus 335 ~~~h~V~~~~R~g~~IEp~ls~QWfVk~~~la~~~l~~~~~g~i~f~P~~~~~~~~~W~~-~i~DWcISRQ-lwwGh~IP 412 (877)
T COG0525 335 PHKHSVGHCERCGTPIEPLLSKQWFVKVLELAKKALEAVKDGKIKFVPERMEKRYEDWME-NIRDWCISRQ-LWWGHRIP 412 (877)
T ss_pred eccccCccccCCCceeeeeecceeeEEhHhhHHHHHHHHhcCCceEecHHHHHHHHHHHh-hCcCceeeee-eecCcccc
Confidence 14789999999999999999999999999999999954446789999999999997 5999999999 79999999
Q ss_pred C----C---------------------------CCCcEEEecCchhHHHHhcCCCCCCCchhhhhhCcCCCCC
Q 046127 303 N----D---------------------------NKQTIYVWFDALLGYISALSEDRDQPSLRTAVSSGWPASL 344 (345)
Q Consensus 303 ~----~---------------------------~~~~iyVWfdal~gYls~~~~~~~~~~~~~~~~~~w~~~~ 344 (345)
. + +..|+++||++.+..+|+++++.+. +++.+|.|.++
T Consensus 413 vWy~~~~g~v~v~~~~~~~~~~~~~~~~~~~~qd~DVLDTWFSS~LwPfstlgWp~~t----~~l~~fyPt~l 481 (877)
T COG0525 413 VWYCKECGNVVVAEEEPEDPAAAEKCPKEELEQDEDVLDTWFSSSLWPFSTLGWPEET----PDLKKFYPTDL 481 (877)
T ss_pred eEEecCCCcEEeCCccccchhhhccCchhcccCCcchhhhhhhcccccccccCCCCcc----hHHHhcCCCcc
Confidence 2 1 2458999999999999999999874 77888999885
|
|
| >TIGR00392 ileS isoleucyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-46 Score=399.94 Aligned_cols=251 Identities=20% Similarity=0.330 Sum_probs=220.4
Q ss_pred CCCCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhC-CCC------H-----
Q 046127 86 EPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADG-GSS------P----- 153 (345)
Q Consensus 86 ~~~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~-g~~------p----- 153 (345)
.++++|+|+.|||||||.|||||+++++++|+++||+||+|++|.++.|+|+||+||+.+|++. |+. +
T Consensus 33 ~~~~~f~i~~~pPy~nG~lH~GH~~~~~~~D~~~Ry~rm~G~~v~~~~G~D~~Glpie~~~ek~l~~~~~~~~~~~~~~~ 112 (861)
T TIGR00392 33 KGKPEFIFHDGPPYANGSIHLGHALNKILKDIILRYKTMQGFNVTRKPGWDTHGLPIEHKVEKKLGISGKKEISSLEIEE 112 (861)
T ss_pred CCCCCeEEecCCCCCCCCccHHHHHHHHHHHHHHHHHHcCCCccCCCCCcCCCccHHHHHHHHHhCcccccccchhhHHH
Confidence 4568899999999999999999999999999999999999999999999999999999999875 554 3
Q ss_pred -----HHHHHHHHHHHHHHHhhcCccc--CccccCCChhhHHHHHHHHHHHHhCCCeeecccCcccccCCCCccchhhh-
Q 046127 154 -----SEHCDVVSQAYKTLWKDLDIAY--DKFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLYCVNCEEYKDEKEL- 225 (345)
Q Consensus 154 -----~~~~~~~~~~~~~~l~~lgI~~--D~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~~c~~~l~d~el- 225 (345)
+++++++.+.++++|++||++. |+.+.|+++.|.+.++++|.+|+++|+||++..+++|||.|+|.|+++|+
T Consensus 113 f~~~c~~~~~~~~~~~~~~~~~lG~~~dw~~~y~T~~p~y~~~~~~~f~~l~~~gliyr~~~~v~w~p~~~T~La~~Ev~ 192 (861)
T TIGR00392 113 FREKCREFALKQIEEQREQFQRLGVWGDWENPYKTMDPSYEESQWWLFKEAHEKGLLYRGLKPVYWSPRCRTALAEAEVE 192 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCceecCCCCcCcCCHHHHHHHHHHHHHHHHCCCEeecceeeecCCCcCCcccHHHHh
Confidence 3788999999999999999965 48889999999999999999999999999999999999999987754210
Q ss_pred --------------------------------------------------------------------------------
Q 046127 226 -------------------------------------------------------------------------------- 225 (345)
Q Consensus 226 -------------------------------------------------------------------------------- 225 (345)
T Consensus 193 ~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~l~i~TTrP~Tl~~~~ai~v~p~~~Y~~~~~~~~~~~~i~~~~~~~~~ 272 (861)
T TIGR00392 193 YKENYKDVKDPSIYVKFPVKKDKKTYLKVKLSSLLIWTTTPWTLPSNLAIAVHPDFEYALVQDNTKVEYFILAKKLVEKL 272 (861)
T ss_pred cccccccccCceEEEEEEecCCcccccccccceEEEEECCcccccCCeeeeeCCCCceEEEEcCCCCcEEEEeHHHHHHH
Confidence
Q ss_pred ---------------------------------------h----------------------------------------
Q 046127 226 ---------------------------------------L---------------------------------------- 226 (345)
Q Consensus 226 ---------------------------------------~---------------------------------------- 226 (345)
.
T Consensus 273 ~~~~~~~~~~~~~~~G~~l~g~~~~~P~~~~~~~~~~~~p~v~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~ 352 (861)
T TIGR00392 273 YNKAGSDYEIIKTFKGSDLEGLEYEHPLYDFVSQLKEGAPVVIGGDHVTTEDGTGIVHTAPGHGEEDYEIGKKYGLEVLS 352 (861)
T ss_pred HHhcCCceEEEeeecchhhCCCEEECCCCccccccccCCcEEeCCCCCCCCCCCceeEcCCCCCHHHHHHHHHcCCCccc
Confidence 0
Q ss_pred ----------------------------------------------------cCCcCCCCCCCceEeeccccccchhHhH
Q 046127 227 ----------------------------------------------------ENQCCPIHLKPCVARKEDNYFFALSKYQ 254 (345)
Q Consensus 227 ----------------------------------------------------~~~~c~~~~~pve~r~~~~~f~~l~~~~ 254 (345)
..++|+||++|++++.++|||+++++++
T Consensus 353 ~vd~~g~~~~~~~~~~g~~~~~~g~~~~~a~~~ii~~L~~~g~l~~~~~~~h~~p~~~R~~~~v~~~~~~QWFi~~~~~k 432 (861)
T TIGR00392 353 PVDEKGVYTEGVNDFQGRFVKDADKDIIKANKIIIEQLKDKGLLLKAEKITHSYPHCWRTKTPVIYRATEQWFIKTKDIK 432 (861)
T ss_pred ccCCCceECCcCccccccccccCCccHHHhHHHHHHHHHhCCCeeeeeeEecCCCccCCCCCEEEEecCccccEEcHHHH
Confidence 0135888999999999999999999999
Q ss_pred HHHHHHHhcCCCcccChHHHHHHHHHHhcCCCCcccccCCCCCCcccCC---C---------------------------
Q 046127 255 KLLEDTLTENPDFVQPSFRLNEVQGWIKSGLRDFSISRASVDWGIPVPN---D--------------------------- 304 (345)
Q Consensus 255 ~~L~e~l~~~~~~~~P~~~~~~~~~wl~~gL~D~~ISR~~~~WGIpvP~---~--------------------------- 304 (345)
+++++.+++. .+.|+..++.+.+||+ +++||||||| .+||+|||. +
T Consensus 433 ~~~l~~~~~i--~~~P~~~~~~~~~~l~-~l~DW~ISRq-r~WG~pIP~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~w~ 508 (861)
T TIGR00392 433 DQMLEQIKKV--NWVPEWGEGRFGNWLE-NRPDWCISRQ-RYWGIPIPIWYCEDTGEPIVVGSIEELIELIELKGIDAWF 508 (861)
T ss_pred HHHHHHhCCc--EEECchHHHHHHHHHh-CCCcceeecc-ccCCCeeeEEEECCCCCCcCchhHHHHHHHHHHhCCcccc
Confidence 9999999876 4689999999999998 6999999999 599999994 1
Q ss_pred -----------------------CCCcEEEecCchhHHHHhcCCCCCCCchhhhhhCcCCCCC
Q 046127 305 -----------------------NKQTIYVWFDALLGYISALSEDRDQPSLRTAVSSGWPASL 344 (345)
Q Consensus 305 -----------------------~~~~iyVWfdal~gYls~~~~~~~~~~~~~~~~~~w~~~~ 344 (345)
+..|+||||||+++|+++.+++.+. ..+..|||+|+
T Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~r~~dvlDvWfdS~~~~~~~~~~~~~~----~~f~~~~P~d~ 567 (861)
T TIGR00392 509 EDLHRDFLDKITLKSGDGGEYRRVPDVLDVWFDSGSMPYASIHYPFEN----EKFKEVFPADF 567 (861)
T ss_pred ccchhhhcCchhccCCCCcceEEccccccchhhcCcchHHhcCCCCCc----chhhccCCceE
Confidence 1249999999999999999865442 35889999874
|
The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms. |
| >PLN02381 valyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-45 Score=398.30 Aligned_cols=265 Identities=20% Similarity=0.275 Sum_probs=228.5
Q ss_pred ccccCCCCCCC-CCCCCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHh----
Q 046127 74 CSYATNTDKSG-TEPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAAD---- 148 (345)
Q Consensus 74 ~~~~~~~~~~~-~~~~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~---- 148 (345)
.|.....|... ..++++|+|++||||+||.|||||++++++.|+++||+||+|++|++++|+|+||++++.++++
T Consensus 112 ~W~~~~~f~~~~~~~~~~f~i~~ppPy~nG~lHiGHa~~~ti~Dii~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek~l~~ 191 (1066)
T PLN02381 112 WWEKSGYFGADAKSSKPPFVIVLPPPNVTGALHIGHALTAAIEDTIIRWKRMSGYNALWVPGVDHAGIATQVVVEKKLMR 191 (1066)
T ss_pred HHHHCCCccCCccCCCCcEEEEeCCCCCCCCccHHHHHHHHHHHHHHHHHHhCCCcccccCCCCCCcChHHHHHHHHhHh
Confidence 35555556432 2456889999999999999999999999999999999999999999999999999999999875
Q ss_pred -CCCCH------------HHHHHHHHHHHHHHHhhcCcccC--ccccCCChhhHHHHHHHHHHHHhCCCeeecccCcccc
Q 046127 149 -GGSSP------------SEHCDVVSQAYKTLWKDLDIAYD--KFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLYC 213 (345)
Q Consensus 149 -~g~~p------------~~~~~~~~~~~~~~l~~lgI~~D--~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc 213 (345)
.|.++ .++++++.+.|+++|++||+++| +.+.|+++.|...++++|.+|+++|+||++.++++||
T Consensus 192 ~~~~~~~~~~re~f~~~~~~~~~~~~~~~~~q~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~VnWc 271 (1066)
T PLN02381 192 ERHLTRHDIGREEFVSEVWKWKDEYGGTILNQLRRLGASLDWSRECFTMDEQRSKAVTEAFVRLYKEGLIYRDIRLVNWD 271 (1066)
T ss_pred hcCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCchhccCCccccCCHHHHHHHHHHHHHHHHCCCEEeccccccCC
Confidence 35544 26788999999999999998877 6677999999999999999999999999999999999
Q ss_pred cCCCCccchhhh--------------------------------------------------------------------
Q 046127 214 VNCEEYKDEKEL-------------------------------------------------------------------- 225 (345)
Q Consensus 214 ~~c~~~l~d~el-------------------------------------------------------------------- 225 (345)
|.|+|.|++.|+
T Consensus 272 P~~~TaLSd~EVey~d~~~~s~~~~~~~~~~~~~g~~~~~~Y~l~~~~~~i~vATtRpEti~g~~avaV~P~d~ry~~L~ 351 (1066)
T PLN02381 272 CTLRTAISDVEVDYIDIKERTLLKVPGYDKPVEFGVLTSFAYPLEGGLGEIVVATTRIETMLGDTAIAIHPDDERYKHLH 351 (1066)
T ss_pred CCCCCCccHHHhhhhccccchhhcccCCCcceeeEEEEEEEEEecCCCCEEEEecCCHHHHhcccceeeCCCCcchhhhC
Confidence 999999877511
Q ss_pred --------------------------------------------------------------------------------
Q 046127 226 -------------------------------------------------------------------------------- 225 (345)
Q Consensus 226 -------------------------------------------------------------------------------- 225 (345)
T Consensus 352 G~~~~~Pl~~~~ipIi~d~~~Vd~e~GTG~V~i~PaHd~~Dy~~~~~~~L~~i~~id~~G~~~~~~~~~~~Gl~~~eAr~ 431 (1066)
T PLN02381 352 GKFAVHPFNGRKLPIICDAILVDPNFGTGAVKITPAHDPNDFEVGKRHNLEFINIFTDDGKINSNGGSEFAGMPRFAARE 431 (1066)
T ss_pred CCEEECCCCCCEEEEEECCccccccCCCCcEEecCCCChHHHHHHHHcCCCeeeeeCCCceeCCCCccccCCCCHHHHHH
Confidence
Q ss_pred -------------------hcCCcCCCCCCCceEeeccccccchhHhHHHHHHHH---hcCCCcccChHHHHHHHHHHhc
Q 046127 226 -------------------LENQCCPIHLKPCVARKEDNYFFALSKYQKLLEDTL---TENPDFVQPSFRLNEVQGWIKS 283 (345)
Q Consensus 226 -------------------~~~~~c~~~~~pve~r~~~~~f~~l~~~~~~L~e~l---~~~~~~~~P~~~~~~~~~wl~~ 283 (345)
...++|+||++|+|.+.++|||++++++++++.+.+ .+....|.|+..++.+.+||.
T Consensus 432 ~Ii~~L~~~g~l~~~~~~~h~~p~c~R~~~~ie~~~~~QWFi~~~~l~~~al~av~~~~~~~i~~~P~~~~~~~~~wl~- 510 (1066)
T PLN02381 432 AVIEALQKKGLYRGAKNNEMRLGLCSRTNDVVEPMIKPQWFVNCSSMAKQALDAAIDGENKKLEFIPKQYLAEWKRWLE- 510 (1066)
T ss_pred HHHHHHHhCCCEecceeeecCCCeeCCCCceEEEeecccceEEchHHHHHHHHHHhhccCCceEEEChHHHHHHHHHHh-
Confidence 004679999999999999999999999999999998 333346899999999999997
Q ss_pred CCCCcccccCCCCCCcccCC---C------------------------------------------CCCcEEEecCchhH
Q 046127 284 GLRDFSISRASVDWGIPVPN---D------------------------------------------NKQTIYVWFDALLG 318 (345)
Q Consensus 284 gL~D~~ISR~~~~WGIpvP~---~------------------------------------------~~~~iyVWfdal~g 318 (345)
+++||||||| .+||+|||. . +..|++||||+.+.
T Consensus 511 n~~DWcISRQ-r~WG~pIPiw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rd~DVlDtWF~Sg~~ 589 (1066)
T PLN02381 511 NIRDWCISRQ-LWWGHRIPAWYVTLEDDQLKELGSYNDHWVVARNESDALLEASQKFPGKKFELSQDPDVLDTWFSSGLF 589 (1066)
T ss_pred cCccceeeee-cccCCccceEEeccChhhcccCCcccceEEEccchHhhcchhhcccCCCccceeecCceeeEEEeCCch
Confidence 5999999999 699999992 1 12489999999999
Q ss_pred HHHhcCCCCCCCchhhhhhCcCCCCC
Q 046127 319 YISALSEDRDQPSLRTAVSSGWPASL 344 (345)
Q Consensus 319 Yls~~~~~~~~~~~~~~~~~~w~~~~ 344 (345)
+++.++++.+. +++..|||+|+
T Consensus 590 p~~~lg~P~~~----~~~~~~~P~d~ 611 (1066)
T PLN02381 590 PLSVLGWPDDT----DDLKAFYPTSV 611 (1066)
T ss_pred HHHHhcCCCCH----HHHhccCCCee
Confidence 99999987553 56888999985
|
|
| >PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-44 Score=388.58 Aligned_cols=233 Identities=22% Similarity=0.350 Sum_probs=206.2
Q ss_pred CCCCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhC------CCCHH-----
Q 046127 86 EPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADG------GSSPS----- 154 (345)
Q Consensus 86 ~~~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~------g~~p~----- 154 (345)
.++++|+|++||||+||.|||||+++++++|+++||+||+|++|.+++|+|+||+||+.++++. +++++
T Consensus 46 ~~~~~f~i~~~pPyanG~lHiGHa~~~~~~Dii~Ry~rm~G~~v~~~~G~D~~Glpie~~~ek~l~~~~~~~~~~~f~~~ 125 (912)
T PRK05743 46 KGKPKFILHDGPPYANGDIHIGHALNKILKDIIVKSKTMSGFDAPYVPGWDCHGLPIELKVEKKLGKKGKKLSAAEFRKK 125 (912)
T ss_pred CCCCcEEEeCCCCCCCCCccHHHHHHHHHHHHHHHHHHccCCcccCCCCcCCCccHhHHHHHHHcCCccccCCHHHHHHH
Confidence 4568899999999999999999999999999999999999999999999999999999999885 56676
Q ss_pred --HHHHHHHHHHHHHHhhcCc--ccCccccCCChhhHHHHHHHHHHHHhCCCeeecccCcccccCCCCccchhhh-----
Q 046127 155 --EHCDVVSQAYKTLWKDLDI--AYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLYCVNCEEYKDEKEL----- 225 (345)
Q Consensus 155 --~~~~~~~~~~~~~l~~lgI--~~D~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~~c~~~l~d~el----- 225 (345)
++++++.+.++++|++||+ ++|+++.|+++.|...++++|.+|+++|+||++..+++||+.|++.|++.|+
T Consensus 126 c~~~~~~~~~~~~~~~~~lG~~~dw~~~~~T~~~~~~~~v~~~f~~l~~~Gliy~~~~~v~w~p~~~TaLad~Evey~~~ 205 (912)
T PRK05743 126 CREYALEQVDIQREDFKRLGVLGDWDNPYLTMDFKYEANIIRALGKMAKKGYLYKGLKPVYWCPDCGSALAEAEVEYHDK 205 (912)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcccCCCCcCCCCHHHHHHHHHHHHHHHHCCCEEecceeEecCCCcCCCchhhHhhcccc
Confidence 4888889999999999999 5568999999999999999999999999999999999999999999865210
Q ss_pred --------------------------------------------------------------------------------
Q 046127 226 -------------------------------------------------------------------------------- 225 (345)
Q Consensus 226 -------------------------------------------------------------------------------- 225 (345)
T Consensus 206 ~s~~~yv~f~l~~~~~~~~~~~~~l~i~TTrP~Tl~~n~aiav~p~~~Y~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~ 285 (912)
T PRK05743 206 TSPSIYVAFPVVDGKLAAAFKDASLVIWTTTPWTLPANQAIAVHPEFDYVLVEVEGEKLIVAKDLVESVLERFGWEDYEV 285 (912)
T ss_pred cCceEEEEEEecCcchhcccCCCEEEEEeCCChhhhhCeEEEECCCCeeEEEEcCCCEEEEeHHhHHHHHHhhCCcceEE
Confidence
Q ss_pred ---------h----------------------------------------------------------------------
Q 046127 226 ---------L---------------------------------------------------------------------- 226 (345)
Q Consensus 226 ---------~---------------------------------------------------------------------- 226 (345)
+
T Consensus 286 ~~~~~G~~l~g~~~~~Pl~~~~~pvi~~~~V~~~~GTG~Vh~aPahg~~Dy~~~~~~~L~~~~~vd~~G~~~~~~~~~~G 365 (912)
T PRK05743 286 LATFKGKELEGLVAQHPFYDRDSPVILGDHVTLDAGTGLVHTAPGHGEDDYVVGQKYGLEVLNPVDDDGRYTEEAPLFAG 365 (912)
T ss_pred EEEechHhhcCCEEECCCCCCeeeEeCCCccCCCCCcCeEEeCCCCCHHHHHHHHHcCCCcccccCCCceEecCCcccCC
Confidence 0
Q ss_pred ----------------------------cCCcCCCCCCCceEeeccccccchhH--hHHHHHHHHhcCCCcccChHHHHH
Q 046127 227 ----------------------------ENQCCPIHLKPCVARKEDNYFFALSK--YQKLLEDTLTENPDFVQPSFRLNE 276 (345)
Q Consensus 227 ----------------------------~~~~c~~~~~pve~r~~~~~f~~l~~--~~~~L~e~l~~~~~~~~P~~~~~~ 276 (345)
..++|+||++|+++|.++|||+++++ +++++++.+++. .+.|+..+++
T Consensus 366 l~v~ea~~~Ii~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r~~~QWFi~~~~~~~k~~~l~~~~~v--~~~P~~~~~r 443 (912)
T PRK05743 366 LFVFKANPKIIEKLEEKGALLKEEKITHSYPHCWRTKKPVIFRATPQWFISMDKKGLREQALKAIEKV--KWIPAWGKNR 443 (912)
T ss_pred cCHHHhHHHHHHHHHhCCCeeeeeeeeccCCeecCCCCEEEEEecCcccEeCChHHHHHHHHHHHccc--EEEChHHHHH
Confidence 14679999999999999999999998 999999999875 4679999999
Q ss_pred HHHHHhcCCCCcccccCCCCCCcccCC----CC------------------CCcEEEecCchhHHHHh
Q 046127 277 VQGWIKSGLRDFSISRASVDWGIPVPN----DN------------------KQTIYVWFDALLGYISA 322 (345)
Q Consensus 277 ~~~wl~~gL~D~~ISR~~~~WGIpvP~----~~------------------~~~iyVWfdal~gYls~ 322 (345)
+.+||++ ++||||||| .+||+|||. +. ++.+++|||+...++..
T Consensus 444 ~~~~i~~-~~DWcISRQ-R~WG~PIP~~~~~~~g~~~~~~~~~~~i~~~~~~~g~~~W~~~~~~~~~~ 509 (912)
T PRK05743 444 IESMVEN-RPDWCISRQ-RTWGVPIPIFYHKETGELHPTPELIEHVAKLFEKEGIDAWFELDAKELLP 509 (912)
T ss_pred HHHHHhc-CcCcccccc-ceeCceEEEEEECCCCcEeecHHHHHHHHHHHHhhCCccccccCHHHhcC
Confidence 9999975 999999999 599999995 22 22457788877766643
|
|
| >PLN02882 aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-44 Score=392.45 Aligned_cols=263 Identities=18% Similarity=0.306 Sum_probs=225.9
Q ss_pred cccCCCCCCC---CCCCCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHh-CC
Q 046127 75 SYATNTDKSG---TEPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAAD-GG 150 (345)
Q Consensus 75 ~~~~~~~~~~---~~~~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~-~g 150 (345)
|...+.|... ..++++|++..||||+||.|||||++++++.|+++||+||+||+|.+++|||+||+||+..+++ .|
T Consensus 21 W~e~~~f~~~~~~~~~~~~f~~~dgPPyanG~~HiGH~~~~~ikDii~Ry~rm~G~~V~~~~GwD~hGlPiE~~vek~lg 100 (1159)
T PLN02882 21 WSEIDAFKTQLKRTEGLPEYIFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMTGHHVTRRFGWDCHGLPVEYEIDKKLG 100 (1159)
T ss_pred HHhCCCccccccccCCCCCEEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCcccccCccCCCCcHHHHHHHHHcC
Confidence 4444555321 2356789999999999999999999999999999999999999999999999999999999864 45
Q ss_pred CC----------------HHHHHHHHHHHHHHHHhhcC--cccCccccCCChhhHHHHHHHHHHHHhCCCeeecccCccc
Q 046127 151 SS----------------PSEHCDVVSQAYKTLWKDLD--IAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLY 212 (345)
Q Consensus 151 ~~----------------p~~~~~~~~~~~~~~l~~lg--I~~D~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~~~y 212 (345)
+. +++++.++.+.+++++++|| +++|+.++|+++.|.+.++++|.+|+++|+||++.++++|
T Consensus 101 i~~~~~i~~~g~~~f~~~c~~~~~~~~~~~~~~~~rlG~~~D~~~~y~T~d~~~~~~v~~~f~~l~~kGliyr~~~~v~w 180 (1159)
T PLN02882 101 IKRRDDVLKMGIDKYNEECRSIVTRYSKEWEKTVTRTGRWIDFENDYKTMDPKFMESVWWVFKQLFEKGLVYKGFKVMPY 180 (1159)
T ss_pred CCCccchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEECCCCcCcCCHHHHHHHHHHHHHHHHCCCEEecceeEee
Confidence 43 34688999999999999999 5667999999999999999999999999999999999999
Q ss_pred ccCCCCccchh---------------------------------------------------h-----------------
Q 046127 213 CVNCEEYKDEK---------------------------------------------------E----------------- 224 (345)
Q Consensus 213 c~~c~~~l~d~---------------------------------------------------e----------------- 224 (345)
||.|+|.|++. +
T Consensus 181 cp~~~TaLs~~E~~~~Yk~~~~~si~v~F~l~~~~~~~~l~iwTTtPwTLpsn~Al~VnP~~~Y~~v~~~~~~~~~i~a~ 260 (1159)
T PLN02882 181 STACKTPLSNFEAGLNYKDVSDPAVMVSFPIVGDPDNASFVAWTTTPWTLPSNLALCVNPNFTYVKVRNKYTGKVYIVAE 260 (1159)
T ss_pred cCCCCCCcchhhhhhhcccCCCcEEEEEEEecCCCCCcEEEEEeCCccccccCeEEEECCCCcEEEEEecCCCeEEEEhH
Confidence 99999999731 0
Q ss_pred ------------------------------------h------------------h------------------------
Q 046127 225 ------------------------------------L------------------L------------------------ 226 (345)
Q Consensus 225 ------------------------------------l------------------~------------------------ 226 (345)
+ .
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~G~~L~g~~y~p~~~~~~~~~~~~~~Vi~~~~V~~~~GTGiVh~aPah 340 (1159)
T PLN02882 261 SRLSALPTAKPKSKKGSKPENAAEGYEVLAKVPGSSLVGKKYEPLFDYFSEFSDTAFRVVADDYVTDDSGTGVVHCAPAF 340 (1159)
T ss_pred HHHHHHHhhhhcccccccccccccccEEEEEecchhhcCCEEECCccccccccCceEEEEccCccCCCCCcceeEecCCC
Confidence 0 0
Q ss_pred -------------------------------------------------------------------cCCcCCCCCCCce
Q 046127 227 -------------------------------------------------------------------ENQCCPIHLKPCV 239 (345)
Q Consensus 227 -------------------------------------------------------------------~~~~c~~~~~pve 239 (345)
..++|+||++|++
T Consensus 341 G~~Dy~v~~~~gl~~~~~~~~~~vd~~G~~~~~~~~~~G~~v~eA~~~Ii~~Lk~~g~L~~~~~~~Hsyp~cwR~~tpli 420 (1159)
T PLN02882 341 GEDDYRVCLANGIIEKGGNLPVPVDDDGCFTEKVTDFSGRYVKDADKDIIAAIKAKGRLVKSGSITHSYPFCWRSDTPLI 420 (1159)
T ss_pred ChhHHHHHHHcCCCccccCccceECCCceEccCCcccCCCCHHHhhHHHHHHHHHCCCccceeeeecCCCEeeCCCCEEE
Confidence 0467999999999
Q ss_pred EeeccccccchhHhHHHHHHHHhcCCCcccChHH-HHHHHHHHhcCCCCcccccCCCCCCcccCC----CC---------
Q 046127 240 ARKEDNYFFALSKYQKLLEDTLTENPDFVQPSFR-LNEVQGWIKSGLRDFSISRASVDWGIPVPN----DN--------- 305 (345)
Q Consensus 240 ~r~~~~~f~~l~~~~~~L~e~l~~~~~~~~P~~~-~~~~~~wl~~gL~D~~ISR~~~~WGIpvP~----~~--------- 305 (345)
+|.++|||++++++++++++.+++. .|.|+.. .+++.+||++ ++||||||| .+||+|||. +.
T Consensus 421 ~~a~~qWFi~~~~~k~~~l~~~~~i--~w~P~~~~~~r~~~wl~~-~~DW~ISRq-R~WGtPIPvw~~~~~~~~~~~~s~ 496 (1159)
T PLN02882 421 YRAVPSWFVKVEEIKDRLLENNKQT--YWVPDYVKEKRFHNWLEN-ARDWAVSRS-RFWGTPLPIWISDDGEEVVVIGSI 496 (1159)
T ss_pred EEecceeEEEcHHHHHHHHHhhCCc--EEECCcchhhHHHHHHhc-Ccccceeec-cccCCccceEEeCCCCeEEecCcH
Confidence 9999999999999999999988776 4789988 4799999975 999999998 599999993 10
Q ss_pred --------------------------------------CCcEEEecCchhHHHHhcCCCCCCCchhhhhhCcCCCCC
Q 046127 306 --------------------------------------KQTIYVWFDALLGYISALSEDRDQPSLRTAVSSGWPASL 344 (345)
Q Consensus 306 --------------------------------------~~~iyVWfdal~gYls~~~~~~~~~~~~~~~~~~w~~~~ 344 (345)
..||+||||+.+...+.++++.+. .+.|.++||+|+
T Consensus 497 ~el~~~~~~~~~dlh~~~id~i~~p~~~~~~~~~~~r~~dVlD~WFdSg~~p~a~~~~p~e~---~~~f~~~~PaD~ 570 (1159)
T PLN02882 497 AELEKLSGVKVTDLHRHFIDHITIPSSRGPEFGVLRRVDDVFDCWFESGSMPYAYIHYPFEN---KELFEKNFPADF 570 (1159)
T ss_pred HHHHHHhCCchhhccccchhhhccccccCCchhceEecCceeeeeeccCccHHHHcCCcccC---hhHhhccCCceE
Confidence 068999999999999999987542 367888999974
|
|
| >TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-44 Score=385.39 Aligned_cols=245 Identities=23% Similarity=0.331 Sum_probs=211.4
Q ss_pred ccCCCCCCCCCCCCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCC-----
Q 046127 76 YATNTDKSGTEPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGG----- 150 (345)
Q Consensus 76 ~~~~~~~~~~~~~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g----- 150 (345)
.....|...++.+++|+|+.||||+||.|||||+++++++|+++||+||+|++|++++|+|+||+||+..|++..
T Consensus 12 ~~~~~fe~~~~~~~kf~i~~ppPy~nG~lH~GH~~~~~~~D~~aRy~Rm~G~~vl~p~G~d~~G~pi~~~aek~~~~~~~ 91 (938)
T TIGR00395 12 EEAHIFEADPDDREKFFLTMAYPYLNGVMHAGHCRTFTIPEVSARFERMKGKNVLFPLGFHVTGTPILGLAELIKRRDEL 91 (938)
T ss_pred HhCCCcccCCCCCCceEEecCCCCCCCCcccchhhhhhHHHHHHHHHHhcCCccCCCCccCCCCCchHHHHHHhhhhhhh
Confidence 333344322334688999999999999999999999999999999999999999999999999999999887621
Q ss_pred -------------------CCHHHHHHHHHHHHHHHHhhcCcccC--ccccCCChhhHHHHHHHHHHHHhCCCeeecccC
Q 046127 151 -------------------SSPSEHCDVVSQAYKTLWKDLDIAYD--KFIRTTEPKHEAIVKEFYSSVLANGDIYKADYE 209 (345)
Q Consensus 151 -------------------~~p~~~~~~~~~~~~~~l~~lgI~~D--~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~ 209 (345)
.+|.++++++...++++|++||+++| +.+.|+++.|.+.++++|.+|+++|+||++.++
T Consensus 92 ~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~lG~s~DW~r~~~T~dp~y~~~v~~~f~~L~e~G~iy~g~~~ 171 (938)
T TIGR00395 92 TIKNYTEVHAIPREELLKFTDPEYIVEYFSREAESACKSMGYSIDWRRSFKTTDPYYDRFIEWQMNKLKELGLIVKGEHP 171 (938)
T ss_pred ccccchhhccCCHHHHHhhcCHHHHHHHHHHHHHHHHHHhCceEECCCCccCCChhHHHHHHHHHHHHHHCCCEecCCee
Confidence 35678889999999999999999987 567799999999999999999999999999999
Q ss_pred cccccCCCCccchhhhh---------------------------------------------------------------
Q 046127 210 GLYCVNCEEYKDEKELL--------------------------------------------------------------- 226 (345)
Q Consensus 210 ~~yc~~c~~~l~d~el~--------------------------------------------------------------- 226 (345)
+.|||.|++.|+|+|+.
T Consensus 172 v~wcp~~~t~lsd~e~~~~e~~~~~~~~~ikf~~~~~~~~l~~aTtRPETl~g~tav~V~P~~~Y~~~~~~~e~~i~s~~ 251 (938)
T TIGR00395 172 VRYCPKDGNPVEDHDLLSGEGVTIVEYILIKFELEDGAFYFVAATLRPETVYGVTNCWVNPTITYVIAEVGGEKWITSKE 251 (938)
T ss_pred EeecCCCCCCCchhHhccCCccccceEEEEEEEcCCCceEEEEeeCCcchhhcceeEEECCCCcEEEEEeCCcEEEEeHH
Confidence 99999999999774210
Q ss_pred --------------------------------------------------------------------------------
Q 046127 227 -------------------------------------------------------------------------------- 226 (345)
Q Consensus 227 -------------------------------------------------------------------------------- 226 (345)
T Consensus 252 ~~~~~~~q~~~~~~~~~~~g~~l~G~~~~~P~~~~~ipil~~~~V~~~~GTGvV~~~Pah~p~Dy~~~~~l~~~~~~~gi 331 (938)
T TIGR00395 252 AFENLSYQKLKYKPIEEVPGKQFIGKKVHNPVVGPEVPILPAEFVDTTKGTGVVMSVPAHAPDDYIALEDLLHDPEYLGI 331 (938)
T ss_pred HHHhhhhcccceeEEEEEchHhccCCEEECCCCCCeeEEeecceeecCCCcceEEeCCCCCHHHHHHHHHhhhcchhcCC
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 046127 227 -------------------------------------------------------------------------------- 226 (345)
Q Consensus 227 -------------------------------------------------------------------------------- 226 (345)
T Consensus 332 ~~~~~~~~~i~ii~~~~~g~~~a~~~~~~~~i~~~~d~~~l~~a~~~~y~~~f~~G~m~~~~~~~~G~~v~ear~~i~~~ 411 (938)
T TIGR00395 332 KPVVIDIEPVPLIHTDGYGDLPAKEIVEEKGIKSQKDKNLLEEATKILYKEEYHTGVMIYNIPPYKGMKVSEAKEKVKAD 411 (938)
T ss_pred cchhcccCCccceecCCCCcccHHHHHHHhcCCCchhhhHHHHHHHHHhhhhccCceeccCCcccCCcCHHHhHHHHHHH
Confidence
Q ss_pred --------------cCCcCCCCCCCceEe-eccccccchh--HhHHHHHHHHhcCCCcccChHHHHHHHHHHhcCCCCcc
Q 046127 227 --------------ENQCCPIHLKPCVAR-KEDNYFFALS--KYQKLLEDTLTENPDFVQPSFRLNEVQGWIKSGLRDFS 289 (345)
Q Consensus 227 --------------~~~~c~~~~~pve~r-~~~~~f~~l~--~~~~~L~e~l~~~~~~~~P~~~~~~~~~wl~~gL~D~~ 289 (345)
+.+.|.|||++++.+ .++||||+++ .+++++.+++++. .+.|+..++.+.+||+ +|+|||
T Consensus 412 L~~~g~~~~~~~~~~~~v~~R~g~~~vv~~~~~QWFi~~~~~~~k~~~~~~l~~~--~~~P~~~~~~~~~~l~-~l~DW~ 488 (938)
T TIGR00395 412 LIDAGLADVMYEFSESPVICRCGTDCIVKVVEDQWFVKYSDESWKELAHECLEGM--RIIPEEVKNAFEGKID-WLKDWA 488 (938)
T ss_pred HHHCCCceEeeecCCCCcEecCCCeEEEeccCCCCeEEcCcHHHHHHHHHHHhcC--EEeCHHHHHHHHHHHh-hhhhcc
Confidence 001144778888887 9999999999 5999999999876 5799999999999997 599999
Q ss_pred cccCCCCCCcccCCCC--------CCcEEEecCchhHHHHhcC
Q 046127 290 ISRASVDWGIPVPNDN--------KQTIYVWFDALLGYISALS 324 (345)
Q Consensus 290 ISR~~~~WGIpvP~~~--------~~~iyVWfdal~gYls~~~ 324 (345)
|||+ .+||+|||.++ +.++|+||+++.+|++..+
T Consensus 489 ISRq-r~WGtpIP~d~~~~ieslsdstiY~~~~~i~~~l~~~~ 530 (938)
T TIGR00395 489 CCRR-YGLGTRLPWDEKWLIESLSDSTIYMAYYTIAHYLNKDY 530 (938)
T ss_pred cccc-cccCcccceeecEEeeecchhhhhhhhccHHHHhhccC
Confidence 9998 69999999643 4799999999999998754
|
The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS. |
| >KOG1247 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-45 Score=346.84 Aligned_cols=252 Identities=29% Similarity=0.524 Sum_probs=227.9
Q ss_pred CCCCCCCEEEEccCCCCCCcCchhHH-HHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHH
Q 046127 84 GTEPADPFVLTTPLYYVNAPPHMGSA-YTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQ 162 (345)
Q Consensus 84 ~~~~~~~~~I~~~~PypnG~LHIGHa-r~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~ 162 (345)
+.+++..++|+.+.||+|..+|+|++ ...+.+||+|||.+.+|++..+++|+|++|+.++..|.+.|.+|+++|++++.
T Consensus 9 p~~n~rnilitsalpyvnnvphlgNIIg~vlsAdV~Aryc~~r~~~~~yicGTDEYgtatetkaleeg~tP~elcdKyh~ 88 (567)
T KOG1247|consen 9 PAPNERNILITSALPYVNNVPHLGNIIGSVLSADVFARYCPLRGPNTLYICGTDEYGTATETKALEEGLTPQELCDKYHG 88 (567)
T ss_pred cCCCccceeeecccceecccccccceeeEEeehhhhcccccCCCCceEEeccccccchhhHHHHHHccCCHHHHHHhcch
Confidence 45667889999999999999999997 67899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCcccCccccCCChhhHHHHHHHHHHHHhCCCeeecccCcccccCCCCccchhhhhc---------------
Q 046127 163 AYKTLWKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLYCVNCEEYKDEKELLE--------------- 227 (345)
Q Consensus 163 ~~~~~l~~lgI~~D~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~~c~~~l~d~el~~--------------- 227 (345)
.++..++.++|++|.|.+|+.+.+.+.+|.+|.+|+++|++-+....+.||..|++||+|.++.+
T Consensus 89 ihk~vy~Wf~IdfD~fgrtTT~~qT~i~Q~iF~kl~~ng~~se~tv~qLyC~vc~~fladr~veg~cp~C~yd~ARGDqc 168 (567)
T KOG1247|consen 89 IHKVVYDWFKIDFDEFGRTTTKTQTEICQDIFSKLYDNGYLSEQTVKQLYCEVCDTFLADRFVEGKCPFCGYDDARGDQC 168 (567)
T ss_pred hHHHHHHhhcccccccCcccCcchhHHHHHHhhchhhcCCcccceeeeEEehhhcccccchhhhccCCCCCCccccchhh
Confidence 99999999999999999999999999999999999999999999999999999999999998762
Q ss_pred -------------CCcCCCCCCCceEeeccccccchhHhHHHHHHHHhcCC-CcccChHHHHHHHHHHhcCCCCcccccC
Q 046127 228 -------------NQCCPIHLKPCVARKEDNYFFALSKYQKLLEDTLTENP-DFVQPSFRLNEVQGWIKSGLRDFSISRA 293 (345)
Q Consensus 228 -------------~~~c~~~~~pve~r~~~~~f~~l~~~~~~L~e~l~~~~-~~~~P~~~~~~~~~wl~~gL~D~~ISR~ 293 (345)
.+.|..|...++.+.+.|.||.|.+++++|.+|+++.. .--|..+.++..++||++||.++||||.
T Consensus 169 d~cG~l~N~~el~~pkc~ic~~~p~~~~t~h~Fl~L~kl~~~lee~~~~~~~~~~WS~Na~~it~sWlk~gl~pRCiTRD 248 (567)
T KOG1247|consen 169 DKCGKLVNAAELKIPKCKICQAGPVVRQTQHLFLSLDKLEPRLEEWLRRTLVEGDWSQNAQNITRSWLKDGLKPRCITRD 248 (567)
T ss_pred hhhhhhcCHHHhcCcchheeccCCeeeeeeEEEEEhHHhHHHHHHHHHhccccCCCccchHHHHHHHHHccccccccccc
Confidence 12344444568899999999999999999999998652 1235666788999999999999999995
Q ss_pred CCCCCcccCC--CCCCcEEEecCchhHHHHhcCCCCCCCchhhhhhCcCCC
Q 046127 294 SVDWGIPVPN--DNKQTIYVWFDALLGYISALSEDRDQPSLRTAVSSGWPA 342 (345)
Q Consensus 294 ~~~WGIpvP~--~~~~~iyVWfdal~gYls~~~~~~~~~~~~~~~~~~w~~ 342 (345)
+.||+|||- .+++|+||||||+|||+|.+.... ++|.+||.+
T Consensus 249 -LkWGtpVPle~fk~KVfYVWFDA~IGYlsit~~yt------~ew~kWwkn 292 (567)
T KOG1247|consen 249 -LKWGTPVPLEKFKDKVFYVWFDAPIGYLSITKNYT------DEWEKWWKN 292 (567)
T ss_pred -cccCCCcChhhhcccEEEEEEcCcceEEEeehhhh------HHHHHHhcC
Confidence 999999995 479999999999999999997654 468889965
|
|
| >PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-44 Score=374.21 Aligned_cols=253 Identities=26% Similarity=0.444 Sum_probs=210.1
Q ss_pred CCCCCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhC-CC------------
Q 046127 85 TEPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADG-GS------------ 151 (345)
Q Consensus 85 ~~~~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~-g~------------ 151 (345)
..++++|+|+.||||+||.|||||++++++.|+++||+||+|++|.++.|+|+||+||+..+++. +.
T Consensus 19 ~~~~~~f~i~~~PPy~nG~lH~GH~~~~~~~D~i~Ry~rm~G~~v~~~~G~D~~Glpie~~vek~l~~~~~~~~~~~~~~ 98 (601)
T PF00133_consen 19 NKNKPKFFIHDPPPYANGDLHIGHALNKTIKDIIARYKRMQGYNVLFPPGWDCHGLPIEAKVEKKLGIKEKKDRKDLGRE 98 (601)
T ss_dssp TTTSGEEEEEE---BTSSS-BHHHHHHHHHHHHHHHHHHCTTSEEEEEEEEB--SHHHHHHHHHHTTTTSHHHCSCSTHH
T ss_pred CCCCCcEEEEeCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCcEeCCCCCcCCCCcchhhhHHHhhcccccccccccccc
Confidence 34578999999999999999999999999999999999999999999999999999999998863 32
Q ss_pred ----CHHHHHHHHHHHHHHHHhhcCcccC--ccccCCChhhHHHHHHHHHHHHhCCCeeecccCcccccCCCCccchhhh
Q 046127 152 ----SPSEHCDVVSQAYKTLWKDLDIAYD--KFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLYCVNCEEYKDEKEL 225 (345)
Q Consensus 152 ----~p~~~~~~~~~~~~~~l~~lgI~~D--~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~~c~~~l~d~el 225 (345)
.++++++++.+.++++|++||++.| +.+.|+++.|.+.++++|.+|+++|+||++.++++||+.|++.|+++|+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~lG~~~Dw~~~y~T~d~~y~~~v~~~F~~l~~kglIyr~~~pv~w~p~~~t~lsd~Ev 178 (601)
T PF00133_consen 99 EFREECREWAEEFIEEQKEQFKRLGVSIDWDREYFTMDPEYEKFVWWQFKKLYEKGLIYRGKKPVNWCPSCQTALSDHEV 178 (601)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT--SECTCEEETTSHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETTTTEEE-GGGE
T ss_pred cchhhhcchhhhhhhhhhhhhhheeeecccCCceEECCccHhHHHHHHHHHHHhcCcEEeeCCCCCcCcccccchhhhhc
Confidence 1457889999999999999998776 7788999999999999999999999999999999999999999987420
Q ss_pred --------------------------------------------------------------------------------
Q 046127 226 -------------------------------------------------------------------------------- 225 (345)
Q Consensus 226 -------------------------------------------------------------------------------- 225 (345)
T Consensus 179 ~~~~~~~~~~~v~f~~~~~~~~~l~i~TtrPeTl~~~~ai~vnP~~~Y~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~ 258 (601)
T PF00133_consen 179 EYKEVKSPSIYVKFPLKDGEEVYLVIWTTRPETLPGNTAIAVNPDFDYVINGERYIVAKDLVEKLSKQEKTKLEDFRGKE 258 (601)
T ss_dssp EEEEEEEEEEEEEEEESSSSEEEEEEEES-GGGGGG-BEEEE-TTSEEEETTEEEEEEHHHHHHHHTTTSSSEEEEECHH
T ss_pred ccccccCceEEEEEEecCccceEEEEEechhhHHhCCeeEEECCCccceeCCeeehHHHHHHHHHHhhhhhcccccCcce
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 046127 226 -------------------------------------------------------------------------------- 225 (345)
Q Consensus 226 -------------------------------------------------------------------------------- 225 (345)
T Consensus 259 L~g~~~~~P~~~~~~~vi~~~~V~~~~GTGiV~~~Pah~~~Dy~~~~~~~l~~~~~id~~G~~~~~~~~~~G~~v~~ar~ 338 (601)
T PF00133_consen 259 LVGLKYIHPLTGREVPVIPDDFVDMDKGTGIVHSAPAHGPDDYEIGKKHNLPIINPIDEDGRFTEEAGKFKGMKVFEARE 338 (601)
T ss_dssp HTTSEEE-TTSSSSEEEEEETTS-SSSTTSEEEE-TTT-HHHHHHHHHHHHCCGCCCCCTSTBBSCCSTTTTSBHHHHHH
T ss_pred ecCcEeccccccceeEEEcccccccccchhhhhhcccCCHHHHHHHhhcCceeeEecCCCceEeecccccCCceeeeccH
Confidence
Q ss_pred ------h-------------cCCcCCCCCCCceEeeccccccchhHhHHHHHHHHhcCCCcccChHHHHHHHHHHhcCCC
Q 046127 226 ------L-------------ENQCCPIHLKPCVARKEDNYFFALSKYQKLLEDTLTENPDFVQPSFRLNEVQGWIKSGLR 286 (345)
Q Consensus 226 ------~-------------~~~~c~~~~~pve~r~~~~~f~~l~~~~~~L~e~l~~~~~~~~P~~~~~~~~~wl~~gL~ 286 (345)
. ..++|++|++|++.+.++|||++++++++++.+.+++. .+.|+..++.+.+||.. ++
T Consensus 339 ~ii~~L~~~g~l~~~~~~~~~~p~c~R~~~~ii~~~~~QWFi~~~~~k~~~l~~~~~i--~~~P~~~~~~~~~~i~~-l~ 415 (601)
T PF00133_consen 339 KIIEDLKEKGLLLKIEEIEHSYPHCWRSGTPIIPRLTDQWFIKYDDWKKKALEALEKI--KFYPESYRKRFENWIDN-LR 415 (601)
T ss_dssp HHHHHHHHTTSEEEEEEEEEEEEEETTTSCBEEEEEEEEEEEEHHHHHHHHHHHHHTS--EESSSTCHHHHHHHHHT---
T ss_pred HHHHHHHHhhhhccccccccccceecCCCCEEEecccceeEEecHHhHHHHHhhcccc--eEEcccchhhhhhhccc-cc
Confidence 0 13579999999999999999999999999999999976 57899999999999975 99
Q ss_pred CcccccCCCCCCcccCC----C--------------------------------------------CCCcEEEecCchhH
Q 046127 287 DFSISRASVDWGIPVPN----D--------------------------------------------NKQTIYVWFDALLG 318 (345)
Q Consensus 287 D~~ISR~~~~WGIpvP~----~--------------------------------------------~~~~iyVWfdal~g 318 (345)
||||||| .+||+|||. + +..+++||||+.+.
T Consensus 416 DWcISRQ-R~WG~PIPiw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvlD~WfdSg~~ 494 (601)
T PF00133_consen 416 DWCISRQ-RYWGTPIPIWYCEDCGEVLVIESTIELIADRVEKEGIDAWLHKPAEDKLPCCGGELRRDTDVLDTWFDSGLW 494 (601)
T ss_dssp EEE-EES-SSSSEBETEEEETTSEEEECCGGHHHHHHHHSTHHHHSCTSSHHHHHHHTTTSSEEEEHS-EE-HHHHHCTC
T ss_pred cchhhcc-CCCCccceeeecccCcccccccccccccccccccccccccccccccccccccccceEEeeeeccccccccCC
Confidence 9999999 699999993 0 14699999999988
Q ss_pred HHHhcCCCCCCCchhhhhhCcCCCCC
Q 046127 319 YISALSEDRDQPSLRTAVSSGWPASL 344 (345)
Q Consensus 319 Yls~~~~~~~~~~~~~~~~~~w~~~~ 344 (345)
+++.++.+.++ .+++..++|.|+
T Consensus 495 ~~~~~~~~~~~---~~~~~~~~P~D~ 517 (601)
T PF00133_consen 495 PFAVLGWPEND---REEFEYWYPVDL 517 (601)
T ss_dssp HHHHTTSTTCS---CHHHHHHSSBSE
T ss_pred ccccccccccc---chhccccCCccc
Confidence 88888766542 377888899874
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A .... |
| >PTZ00427 isoleucine-tRNA ligase, putative; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-43 Score=384.27 Aligned_cols=148 Identities=16% Similarity=0.154 Sum_probs=130.0
Q ss_pred ccccCCCCCCCC---CCCCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhC-
Q 046127 74 CSYATNTDKSGT---EPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADG- 149 (345)
Q Consensus 74 ~~~~~~~~~~~~---~~~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~- 149 (345)
-|.....|.... .++++|+++.||||+||.|||||++++++.|+++||+||+||+|.+++|||+||+||+..+++.
T Consensus 84 ~W~e~~~f~~~~~~~~~~~~Fv~~~gPPyanG~lHiGHal~~tikDii~Ry~rm~G~~V~~~~GwD~hGlPiE~~vEk~l 163 (1205)
T PTZ00427 84 YWKSIDAFNTSNKLAKNKKAYIFYDGPPFATGLPHYGHLLAGIIKDCVTRYFYQCGFSVERKFGWDCHGLPIEYEIEKEN 163 (1205)
T ss_pred HHHhCCCcccCccccCCCCcEEEecCCCCCCCCcchhHHHHHHHHHHHHHHHHcCCCeeccCCccCCCCcHHHHHHHHHh
Confidence 355556664322 3467799999999999999999999999999999999999999999999999999999999862
Q ss_pred CC---------C-------HHHHHHHHHHHHHHHHhhcC--cccCccccCCChhhHHHHHHHHHHHHhCCCeeecccCcc
Q 046127 150 GS---------S-------PSEHCDVVSQAYKTLWKDLD--IAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGL 211 (345)
Q Consensus 150 g~---------~-------p~~~~~~~~~~~~~~l~~lg--I~~D~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~~~ 211 (345)
|+ . ++++++++.+.+++++++|| +++|+.+.|+++.|.+.++++|.+|+++|+||++.++++
T Consensus 164 g~~~k~~i~~~g~~~f~e~c~~~~~~~~~~~~~~~~rlG~~iDw~~~y~T~d~~~~~~v~~~f~~L~ekGlIYr~~k~V~ 243 (1205)
T PTZ00427 164 NINKKEDILKMGIDVYNEKCRGIVLKYSNEWVKTVERIGRWIDFKNDYKTMDKTFMESVWWVFSELYKNNYVYKSFKVMP 243 (1205)
T ss_pred CCCcccchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCcEEecCCCcCcCCHHHHHHHHHHHHHHHHCCCEEecceeec
Confidence 32 1 35788899999999999999 667799999999999999999999999999999999999
Q ss_pred cccCCCCccc
Q 046127 212 YCVNCEEYKD 221 (345)
Q Consensus 212 yc~~c~~~l~ 221 (345)
|||.|+|.|+
T Consensus 244 wcp~c~TaLS 253 (1205)
T PTZ00427 244 YSCKCNTPIS 253 (1205)
T ss_pred cCCCCCCchh
Confidence 9999987654
|
|
| >PLN02843 isoleucyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-42 Score=372.73 Aligned_cols=135 Identities=24% Similarity=0.361 Sum_probs=122.5
Q ss_pred CCCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhC-------CCCHHH----
Q 046127 87 PADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADG-------GSSPSE---- 155 (345)
Q Consensus 87 ~~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~-------g~~p~~---- 155 (345)
.+++|+|++||||+||.|||||+++.++.|+++||+||+|++|.+++|+|+||+||+.++++. +.++.+
T Consensus 30 ~~~~f~i~~~PPy~nG~lHiGHa~~~~lkDii~Ry~rm~G~~v~~~pG~D~hGlpie~~vek~l~~~~~~~~~~~~f~~~ 109 (974)
T PLN02843 30 NGESFTLHDGPPYANGDLHIGHALNKILKDFINRYQLLQGKKVHYVPGWDCHGLPIELKVLQSLDQEARKELTPIKLRAK 109 (974)
T ss_pred CCCCEEEeCCCCCCCCCcchhHHHHHHHHHHHHHHHHhcCCccccCCccCCCCcHHHHHHHHHhchhhhccCCHHHHHHH
Confidence 357799999999999999999999999999999999999999999999999999999988542 345554
Q ss_pred ---HHHHHHHHHHHHHhhcCc--ccCccccCCChhhHHHHHHHHHHHHhCCCeeecccCcccccCCCCccc
Q 046127 156 ---HCDVVSQAYKTLWKDLDI--AYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLYCVNCEEYKD 221 (345)
Q Consensus 156 ---~~~~~~~~~~~~l~~lgI--~~D~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~~c~~~l~ 221 (345)
+++++.+.++++|++||+ ++|+.+.|+++.|...++++|.+|+++|+||++.++++||++|++.|+
T Consensus 110 c~~~~~~~~~~~~~~~~~lG~~~Dw~~~y~T~d~~~~~~v~~~f~~l~~~GlIyr~~kpV~Wcp~~~Tala 180 (974)
T PLN02843 110 AAKFAKKTVDTQRESFKRYGVWGDWENPYLTLDPEYEAAQIEVFGQMFLNGYIYRGRKPVHWSPSSRTALA 180 (974)
T ss_pred HHHHHHHHHHHHHHHHHHhCCceecCCCCccCCHHHHHHHHHHHHHHHHCCCEEecceeeeecCCCCCcch
Confidence 467777888999999999 566889999999999999999999999999999999999999998774
|
|
| >PRK13804 ileS isoleucyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-42 Score=372.17 Aligned_cols=137 Identities=23% Similarity=0.260 Sum_probs=125.5
Q ss_pred CCCCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCC----CC-----H---
Q 046127 86 EPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGG----SS-----P--- 153 (345)
Q Consensus 86 ~~~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g----~~-----p--- 153 (345)
.++++|+|+.||||+||.|||||++++++.|+++||+||+|++|.++.|||+||+||+.++++.. .. +
T Consensus 51 ~~~~~f~l~dgPPyanG~lHiGHaln~~lkDii~Ry~rm~G~~v~~~pGwD~hGlPiE~~vek~~~~~~~~~~~~~~~~f 130 (961)
T PRK13804 51 KGRPKFVLHDGPPYANGNIHIGHALNKILKDVIVRSKQMLGFDANYVPGWDCHGLPIEWKIEEKYRAKGKNKDEVPVAEF 130 (961)
T ss_pred CCCCcEEEeCCCCCCCCCccHHHHHHHHHHHHHHHHHHhcCCcccCCCCcCCCCcHHHHHHHHhhhhcCCChHhCCHHHH
Confidence 45688999999999999999999999999999999999999999999999999999999887653 32 2
Q ss_pred ----HHHHHHHHHHHHHHHhhcCcccC--ccccCCChhhHHHHHHHHHHHHhCCCeeecccCcccccCCCCccch
Q 046127 154 ----SEHCDVVSQAYKTLWKDLDIAYD--KFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLYCVNCEEYKDE 222 (345)
Q Consensus 154 ----~~~~~~~~~~~~~~l~~lgI~~D--~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~~c~~~l~d 222 (345)
+++++++.+.++++|++||++.| +.+.|+++.|...++++|.+|+++|+||++..+++||+.|++.|++
T Consensus 131 ~~~c~~~a~~~i~~~~~~~~rlG~~~Dw~~~y~T~d~~y~~~~~~~F~~l~~kGliyr~~kpV~Wcp~~~TaLa~ 205 (961)
T PRK13804 131 RKECREYALSWIDVQREEFKRLGVLGDWDNPYTTMDFHAEARIAREFGKFAAKGQLYRGSKPVMWSVVERTALAE 205 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCceecCCCCcCcCCHHHHHHHHHHHHHHHHCCCEEeCCcceecCCCCCCCccc
Confidence 35778888999999999999855 8889999999999999999999999999999999999999998865
|
|
| >COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-42 Score=363.78 Aligned_cols=265 Identities=22% Similarity=0.310 Sum_probs=221.9
Q ss_pred ccccccccccccccccccccccccccCCCCCC----CCCCCCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCC
Q 046127 52 THFRNRLKFRQNLFSLSKGAVFCSYATNTDKS----GTEPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGK 127 (345)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~ 127 (345)
|.|+.+-+|... ++.-+.-|...+.+.+ ..+++++|++.++|||+||.+|||||.|.++.|++.||..|+||
T Consensus 12 T~fpmr~~l~~~----E~~i~~~W~e~~iy~k~~~~~~~g~~~FvfhDGPPyANG~iHiGHalnKilKDiI~Ry~~m~G~ 87 (933)
T COG0060 12 TDFPMRANLPKK----EPKILKFWEENDIYEKIREERNKGKPKFVLHDGPPYANGNIHIGHALNKILKDIIVRYKTMQGY 87 (933)
T ss_pred CCCCccCChhhc----CHHHHHHHHHhhHHHHHHHHHhCCCCcEEEeCCCCCCCCCcchhhhHHHhhhhhhhhhhcccCC
Confidence 445555444332 2222333554444421 23567999999999999999999999999999999999999999
Q ss_pred eEEEEcCCCCcChHHHHHHHh-CCC--------C-------HHHHHHHHHHHHHHHHhhcCccc--CccccCCChhhHHH
Q 046127 128 KVIFITGTDEHGEKIAAAAAD-GGS--------S-------PSEHCDVVSQAYKTLWKDLDIAY--DKFIRTTEPKHEAI 189 (345)
Q Consensus 128 ~V~~v~G~D~~G~~I~~~A~~-~g~--------~-------p~~~~~~~~~~~~~~l~~lgI~~--D~f~~T~~~~~~~~ 189 (345)
+|.++.||||||+||+.++++ .|. . .++++.++.+.+++++++||+.. |+-|.|+++.|.+.
T Consensus 88 ~v~~~pGWDcHGLPIE~~vek~lg~~k~~i~~~~~~efr~~Cr~~a~~~v~~q~~~f~RLGv~~Dw~npY~Tmd~~ye~~ 167 (933)
T COG0060 88 DVPYVPGWDCHGLPIELKVEKKLGIGKKDIESFGVEEFREKCREFALEQVDEQKEQFKRLGVWGDWENPYKTMDPSYEES 167 (933)
T ss_pred cCCCCCCCcCCCchHHHHHHHHhCCCcchhhhcCHHHHHHHHHHHHHHHHHHHHHHHHhheEeeccCCCeecCCHHHHHH
Confidence 999999999999999988876 342 1 23567778899999999999865 58899999999999
Q ss_pred HHHHHHHHHhCCCeeecccCcccccCCCCccchhhh--------------------------------------------
Q 046127 190 VKEFYSSVLANGDIYKADYEGLYCVNCEEYKDEKEL-------------------------------------------- 225 (345)
Q Consensus 190 v~~~~~~L~~kG~iy~~~~~~~yc~~c~~~l~d~el-------------------------------------------- 225 (345)
+.++|.+|+++|+||++..+++||++|++.|+++|+
T Consensus 168 ~~~~f~~~~~kGllyrg~Kpv~wsp~c~TaLAeaEvey~d~~dpSIyV~F~v~~~~~~~~~~lviWTTTPWTLPaN~aia 247 (933)
T COG0060 168 VWWAFKELYEKGLLYRGYKPVPWSPRCETALAEAEVEYGDVKDPSIYVKFPVKDEGLDENAYLVIWTTTPWTLPANLAIA 247 (933)
T ss_pred HHHHHHHHHHCCCeecCCeeeeecCCCCcchhhhhhcccccCCceEEEEEEeccCCCCCCcEEEEEeCCCCCchhcceeE
Confidence 999999999999999999999999999999976320
Q ss_pred --------------------------------------------------------------------------------
Q 046127 226 -------------------------------------------------------------------------------- 225 (345)
Q Consensus 226 -------------------------------------------------------------------------------- 225 (345)
T Consensus 248 v~pd~~Y~lv~~~~~~~IlA~~lve~~~~~~~~~~~~vl~~~kG~~Leg~~y~hPf~~~~~~~~~~v~~gd~VT~d~GTG 327 (933)
T COG0060 248 VHPDLDYVLVEVNGEKLILAKALVESVAKKAGVEDYEVLETFKGSELEGLRYEHPFYDFVYDRAFPVILGDHVTLDDGTG 327 (933)
T ss_pred eCCCcceEEEEECCEEEEEhHHHHHHHHHHcCCcceEEeEEeehhhhCCCEeeCCcccccccceeeEEecCeEecCCCcc
Confidence
Q ss_pred ----------------------------------------------------------------------hcCCcCCCCC
Q 046127 226 ----------------------------------------------------------------------LENQCCPIHL 235 (345)
Q Consensus 226 ----------------------------------------------------------------------~~~~~c~~~~ 235 (345)
+.+++||||.
T Consensus 328 ~VHtAPghGeeDy~vg~~~g~l~v~~pVD~~G~yt~~~~~~~G~~v~dAn~~Ii~~Lk~~g~Ll~~e~i~HsYPhcWR~k 407 (933)
T COG0060 328 LVHTAPGHGEEDYEVGKKYGLLEVLNPVDDNGRYTEEAPKYEGLFVKDANKKIIEDLKEKGNLLKSEKIEHSYPHCWRTK 407 (933)
T ss_pred ceecCCCCCHHHHHHHHHcCCcCCccccCCCccccccchhhCCceeccCCHHHHHHHHhCCceeeeeeEEeCCCcccCCC
Confidence 0167899999
Q ss_pred CCceEeeccccccchhHhHHHHHHHHhcCCCcccChHHHHHHHHHHhcCCCCcccccCCCCCCcccCC----C-------
Q 046127 236 KPCVARKEDNYFFALSKYQKLLEDTLTENPDFVQPSFRLNEVQGWIKSGLRDFSISRASVDWGIPVPN----D------- 304 (345)
Q Consensus 236 ~pve~r~~~~~f~~l~~~~~~L~e~l~~~~~~~~P~~~~~~~~~wl~~gL~D~~ISR~~~~WGIpvP~----~------- 304 (345)
+|+.+|.++|||++++++++++++-+++. .|.|+...+++.+||. +.+||||||| ..||+|||. +
T Consensus 408 tPlIyRAt~QWFi~v~~~r~~~l~~i~~v--~w~P~~~~~R~~~mve-~r~DW~ISRQ-R~WGvPiPi~~~~~~g~~~~~ 483 (933)
T COG0060 408 TPLIYRATPQWFVSVDKLRDKMLKEINKV--NWVPDWGKNRFGNMVE-NRPDWCISRQ-RYWGVPIPVWYCKETGEILVI 483 (933)
T ss_pred CeeEEeecchheeEHHHHHHHHHHHHhcc--eEEChhHHHHHHHHHc-CCCcceeecc-ccCCCceeEEEECCCCCeecc
Confidence 99999999999999999999999777755 5789999999999996 5899999999 599999992 0
Q ss_pred -----------------------------------------CCCcEEEecCchhHHHHhcC
Q 046127 305 -----------------------------------------NKQTIYVWFDALLGYISALS 324 (345)
Q Consensus 305 -----------------------------------------~~~~iyVWfdal~gYls~~~ 324 (345)
...+++||||+...+.+.+.
T Consensus 484 ~~El~e~~~~~~~~~g~~~w~~~~idel~~~~~~~g~~~~rv~DvlDVWFDSGs~~~a~~~ 544 (933)
T COG0060 484 TEELEELVGQLVEEKGIDDWHRPDIDELLPPCPEDGKEYRRVPDVLDVWFDSGSTPYAVLH 544 (933)
T ss_pred HHHHHHHHHHHhhhcCchhhhccchHhhcCCCCCCcceeEecCcceEEEEcCCCCcccccC
Confidence 14689999999999988887
|
|
| >TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-42 Score=365.64 Aligned_cols=196 Identities=18% Similarity=0.262 Sum_probs=187.5
Q ss_pred CCCCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHH
Q 046127 86 EPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYK 165 (345)
Q Consensus 86 ~~~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~ 165 (345)
.++++|+|+++||||||.|||||+++++++|+++||+||+|++|.+++|+|+||+||+.+|++.|++|.++++++.+.|+
T Consensus 26 ~~k~k~~v~~~pPy~nG~lHiGH~~~~~~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~p~~~~~~~~~~~~ 105 (842)
T TIGR00396 26 SNKPKYYILDMFPYPSGALHMGHVRNYTITDVLSRYYRMKGYNVLHPMGWDAFGLPAENAAIKRGIHPAKWTYENIANMK 105 (842)
T ss_pred CCCCCEEEEcCCCCCCCccccchhHHHHHHHHHHHHHHhcCCceeccCCcCCCChHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCcccC--ccccCCChhhHHHHHHHHHHHHhCCCeeecccCcccccCCCCccchhhhhcCCcCCCCCCCceEeec
Q 046127 166 TLWKDLDIAYD--KFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLYCVNCEEYKDEKELLENQCCPIHLKPCVARKE 243 (345)
Q Consensus 166 ~~l~~lgI~~D--~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~~c~~~l~d~el~~~~~c~~~~~pve~r~~ 243 (345)
++|++||+++| ++++|+++.|++.++++|.+|+++|+||++..+++||+.|+++|++.|+...+.|++||.+++.+++
T Consensus 106 ~~~~~lG~~~Dw~~~~~T~d~~y~~~~~~~F~~L~~kGliy~~~~~v~wcp~~~t~La~~ev~~~g~~~~~g~~v~~~~~ 185 (842)
T TIGR00396 106 KQLQALGFSYDWDREIATCDPEYYKWTQWIFLELFEKGLAYVKEADVNWCPNDGTVLANEQVDSDGRSWRGGTPVEKKEL 185 (842)
T ss_pred HHHHHhCCcccCCCCcccCCHHHHHHHHHHHHHHHHCCCeEeeccceEEeCCCCCCccHHHHhhcCccccCCCcceEeec
Confidence 99999999876 7899999999999999999999999999999999999999999999999655799999999999999
Q ss_pred cccccchhHhHHHHHHHHhcCCCcccChHHHHHHHHHHhc
Q 046127 244 DNYFFALSKYQKLLEDTLTENPDFVQPSFRLNEVQGWIKS 283 (345)
Q Consensus 244 ~~~f~~l~~~~~~L~e~l~~~~~~~~P~~~~~~~~~wl~~ 283 (345)
+||||+|++|+++|.+++++.+ -||+.++++.++||..
T Consensus 186 ~~~f~~i~~~~~~l~~~l~~~~--~wp~~v~~~q~~wig~ 223 (842)
T TIGR00396 186 KQWFLKITAYAEELLNDLEELD--HWPESVKEMQRNWIGK 223 (842)
T ss_pred ceeEEehhhhHHHHHHHHhhhc--cccHHHHHHHHhcccc
Confidence 9999999999999999999885 3899999999999974
|
The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches. |
| >PLN02563 aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=364.74 Aligned_cols=205 Identities=20% Similarity=0.287 Sum_probs=191.0
Q ss_pred cccCCCCCCC---CCCCCCEEEEccCCCCCCc-CchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCC
Q 046127 75 SYATNTDKSG---TEPADPFVLTTPLYYVNAP-PHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGG 150 (345)
Q Consensus 75 ~~~~~~~~~~---~~~~~~~~I~~~~PypnG~-LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g 150 (345)
|.....|... ..++++|+|++++|||||. |||||+++++++|+++||+||+|++|++++|+|+||+||+.+|.+.|
T Consensus 93 W~e~~~f~~~~~~~~~k~k~~v~~~~PYpnG~~lHiGH~~~y~~~DviaRy~Rm~G~~Vl~~~G~D~~GlPiE~~a~~~g 172 (963)
T PLN02563 93 WEENRTFRTPDDVDTSKPKFYVLDMFPYPSGAGLHVGHPEGYTATDILARYKRMQGYNVLHPMGWDAFGLPAEQYAIETG 172 (963)
T ss_pred HHhCCCccccccccCCCCCEEEEeCCCCCCCcccchhhHHHHHHHHHHHHHHHhcCCeecccccccccCcHHHHHHHHcC
Confidence 5545555322 3456889999999999996 99999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhhcCcccC--ccccCCChhhHHHHHHHHHHHHhCCCeeecccCcccccCCCCccchhhhhcC
Q 046127 151 SSPSEHCDVVSQAYKTLWKDLDIAYD--KFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLYCVNCEEYKDEKELLEN 228 (345)
Q Consensus 151 ~~p~~~~~~~~~~~~~~l~~lgI~~D--~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~~c~~~l~d~el~~~ 228 (345)
..|+++++++++.|+++|++||+++| ++++|+++.|+..++++|.+|+++|+||+++.+++||+.|+++|++.|+++
T Consensus 173 ~~p~~~~~~~i~~~~~q~~~lG~s~DW~r~~~T~dp~y~~~~q~~F~~L~~~GliY~~~~~v~wcp~~~T~La~~Ev~~- 251 (963)
T PLN02563 173 THPKITTLKNIARFRSQLKSLGFSYDWDREISTTEPEYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVD- 251 (963)
T ss_pred CChHHhHHHHHHHHHHHHHHhCcEeeCCCCeecCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeecCCcCCCCCHHHhhc-
Confidence 99999999999999999999999887 899999999999999999999999999999999999999999999999975
Q ss_pred CcCCCCCCCceEeeccccccchhHhHHHHHHHHhcCCCcccChHHHHHHHHHHhc
Q 046127 229 QCCPIHLKPCVARKEDNYFFALSKYQKLLEDTLTENPDFVQPSFRLNEVQGWIKS 283 (345)
Q Consensus 229 ~~c~~~~~pve~r~~~~~f~~l~~~~~~L~e~l~~~~~~~~P~~~~~~~~~wl~~ 283 (345)
++|++|+.+++.++++||||+|++|+++|+++++..+ ||+.+++++++||..
T Consensus 252 ~~~~~~~~~~~~~~~~q~f~~it~ya~~L~~~l~~~~---wp~~v~~~q~nwiG~ 303 (963)
T PLN02563 252 GLSERGGHPVIRKPMRQWMLKITAYADRLLEDLDDLD---WPESIKEMQRNWIGR 303 (963)
T ss_pred CCCcCCCCceEEEecceeEEecchhHHHHHHhhhhcC---CCHHHHHHHHHhccc
Confidence 7899999999999999999999999999999998762 799999999999974
|
|
| >PRK00390 leuS leucyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-41 Score=359.28 Aligned_cols=205 Identities=21% Similarity=0.302 Sum_probs=189.0
Q ss_pred cccCCCCCCCCCCCCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHH
Q 046127 75 SYATNTDKSGTEPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPS 154 (345)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~ 154 (345)
|.....|......+++++|+++||||||.|||||+++++++|+++||+||+|++|.+++|+|+||+||+.+|++.|++|.
T Consensus 18 W~~~~~f~~~~~~~~~~~i~~~pPy~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~ 97 (805)
T PRK00390 18 WEENKTFKTTEDSSKKYYVLDMFPYPSGGLHMGHVRNYTIGDVIARYKRMQGYNVLHPMGWDAFGLPAENAAIKTGTHPA 97 (805)
T ss_pred HHHCCCcccCccCCCCEEEEccCCCCCCCcchhhhHHHHHHHHHHHHHHhcCCcccccCccCCCCCHHHHHHHHcCCCHH
Confidence 33333443222234579999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCcccC--ccccCCChhhHHHHHHHHHHHHhCCCeeecccCcccccCCCCccchhhhhcCCcCC
Q 046127 155 EHCDVVSQAYKTLWKDLDIAYD--KFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLYCVNCEEYKDEKELLENQCCP 232 (345)
Q Consensus 155 ~~~~~~~~~~~~~l~~lgI~~D--~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~~c~~~l~d~el~~~~~c~ 232 (345)
++++++.+.|+++|++||+++| .+++|+++.|.+.++++|.+|+++|+||++..+++||+.|+++|++.|+.+ ++|+
T Consensus 98 ~~~~~~~~~~~~~~~~lGi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~Gliy~~~~~v~wcp~~~t~La~~ev~~-~~~~ 176 (805)
T PRK00390 98 EWTYENIANMKKQLKSLGFSYDWSREIATCDPEYYKWTQWIFLKLYEKGLAYRKESPVNWCPVDGTVLANEQVID-GRCW 176 (805)
T ss_pred HHHHHHHHHHHHHHHHhCCcccCCCCeecCCHHHHHHHHHHHHHHHHCCCEEEecCEEEecCCcCCCCCHHHhhC-Ceec
Confidence 9999999999999999999887 789999999999999999999999999999999999999999999999975 7899
Q ss_pred CCCCCceEeeccccccchhHhHHHHHHHHhcCCCcccChHHHHHHHHHHh
Q 046127 233 IHLKPCVARKEDNYFFALSKYQKLLEDTLTENPDFVQPSFRLNEVQGWIK 282 (345)
Q Consensus 233 ~~~~pve~r~~~~~f~~l~~~~~~L~e~l~~~~~~~~P~~~~~~~~~wl~ 282 (345)
+|+.+++.++++||||+|++|+++|.++++..+. ||+.++.+.++||.
T Consensus 177 ~~~~~~~~~~~~~~f~~i~~~~~~L~~~l~~~~~--w~~~v~~~~~~wig 224 (805)
T PRK00390 177 RCGAPVEKKELRQWFLKITDYADELLDDLDKLED--WPEKVKTMQRNWIG 224 (805)
T ss_pred ccCCeeEEEecceeeEecchhHHHHHHHHHhhcc--CcHHHHHHHHhhcc
Confidence 9999999999999999999999999999998753 79999999999987
|
|
| >COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=354.66 Aligned_cols=206 Identities=18% Similarity=0.271 Sum_probs=190.8
Q ss_pred cccCCCCCCCCC-CC-CCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCC
Q 046127 75 SYATNTDKSGTE-PA-DPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSS 152 (345)
Q Consensus 75 ~~~~~~~~~~~~-~~-~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~ 152 (345)
|.....|...+. +. ++|+|+.+.|||||.||+||.|+|+++|+++||+||+||+|++.+|||.+|+|++..|.+.+.+
T Consensus 18 W~e~~~Fe~~~d~~~~~Kfyvl~mfPYpSG~LHvGH~r~Yti~Dv~aRykRm~GyNVL~PMGwdafGlPae~~A~~~~~~ 97 (814)
T COG0495 18 WEEAKVFEADEDSDKPEKFYVLVMFPYPSGALHVGHVRNYTIGDVIARYKRMQGYNVLHPMGWDAFGLPAENAAIKIGTD 97 (814)
T ss_pred HHhcCCcccCCCCCCCCceEEEeCCCCCCCCcccCccccccHHHHHHHHHHhcCCeecccCcccccCchHHHHHHHhCCC
Confidence 444555543222 22 6999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCcccC--ccccCCChhhHHHHHHHHHHHHhCCCeeecccCcccccCCCCccchhhhhcCCc
Q 046127 153 PSEHCDVVSQAYKTLWKDLDIAYD--KFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLYCVNCEEYKDEKELLENQC 230 (345)
Q Consensus 153 p~~~~~~~~~~~~~~l~~lgI~~D--~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~~c~~~l~d~el~~~~~ 230 (345)
|..+++.+++.++++|++||.++| +.+.|+|+.|+.++|++|.+|+++|++|+++.++.|||.|++.|+++|+++ ++
T Consensus 98 P~~wt~~ni~~~k~qlk~lG~siDW~Ref~T~Dp~Yyk~~QW~F~kL~ekGL~y~~~~~VnwcP~d~tvlaneqv~~-g~ 176 (814)
T COG0495 98 PAKWTYYNIAYMKKQLKSLGFSIDWRREFATCDPEYYKWIQWQFLKLYEKGLAYRKEAPVNWCPVDGTVLANEQVID-GG 176 (814)
T ss_pred hHHHHHHHHHHHHHHHHHhCCccccccceecCCccHHHHHHHHHHHHHHCCCEEeccccceeCCCcCCccccceeec-CC
Confidence 999999999999999999999988 667799999999999999999999999999999999999999999999996 78
Q ss_pred CCCCCCCceEeeccccccchhHhHHHHHHHHhcCCCcccChHHHHHHHHHHh
Q 046127 231 CPIHLKPCVARKEDNYFFALSKYQKLLEDTLTENPDFVQPSFRLNEVQGWIK 282 (345)
Q Consensus 231 c~~~~~pve~r~~~~~f~~l~~~~~~L~e~l~~~~~~~~P~~~~~~~~~wl~ 282 (345)
|++||.+|+.++.+||||++++|++.|++-+.... ..||+.++.+.++||.
T Consensus 177 ~~r~~~~V~~kel~qw~~kit~yae~ll~~l~~l~-~~wPE~Vk~mq~nWIg 227 (814)
T COG0495 177 CWRCGEPVEIKELTQWFFKITDYADELLDDLDKLA-TLWPETVKGMQRNWIG 227 (814)
T ss_pred cccCCCceeEeeeEEEEEEechhHHHHHhhhhhhc-cCCchhHHHHHHcCcC
Confidence 99999999999999999999999999999988764 3599999999999997
|
|
| >PLN02959 aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-37 Score=337.58 Aligned_cols=137 Identities=23% Similarity=0.296 Sum_probs=119.4
Q ss_pred CCCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhC-------CCC-------
Q 046127 87 PADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADG-------GSS------- 152 (345)
Q Consensus 87 ~~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~-------g~~------- 152 (345)
+.++|+|+.||||+||.|||||+++++++|+++||+||+|++|+|++|||+||+||+..|++. |..
T Consensus 43 ~~~kf~i~~ppPY~NG~lHiGHa~t~t~~D~i~Rykrm~G~~vlfp~G~d~tGlPIe~~aek~~~ei~~~g~~~~~~~~~ 122 (1084)
T PLN02959 43 PGEKFFGNFPYPYMNGLLHLGHAFSLSKLEFAAAYHRLRGANVLLPFAFHCTGMPIKASADKLAREIQQYGNPPVFPEED 122 (1084)
T ss_pred CCCcEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHHcCCCccCCCCCcCCCCccHHHHHHHHHHHHHHcCCCccccccc
Confidence 348899999999999999999999999999999999999999999999999999999998652 211
Q ss_pred ------------------------------------------------------------HHHHHHHHHHHHHHHHhhcC
Q 046127 153 ------------------------------------------------------------PSEHCDVVSQAYKTLWKDLD 172 (345)
Q Consensus 153 ------------------------------------------------------------p~~~~~~~~~~~~~~l~~lg 172 (345)
|..+++.+...++++|++||
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~k~~~k~~~~~~~~~~~~~~~~~~~~i~~f~dp~~~~~yF~~~~~~~~k~lG 202 (1084)
T PLN02959 123 EDEAAAVAAAKAEAEAAAAPPDKFKGKKSKAVAKSGTQKYQWEIMRSFGLPDSEIAKFQDPYHWLSYFPPLAKEDLKAFG 202 (1084)
T ss_pred ccccccccccccccccccccHHHHHHHHHHHHHHhCCchHHHHHHhhcCCchhhhhhccCHHHHHHhccHHHHHHHHHhC
Confidence 12234444477899999999
Q ss_pred cccC--ccccCCC--hhhHHHHHHHHHHHHhCCCeeecccCcccccCCCCccchh
Q 046127 173 IAYD--KFIRTTE--PKHEAIVKEFYSSVLANGDIYKADYEGLYCVNCEEYKDEK 223 (345)
Q Consensus 173 I~~D--~f~~T~~--~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~~c~~~l~d~ 223 (345)
++.| +-+.|+| +.|...+++.|.+|+++|+||++.+++.|||.|++.++|+
T Consensus 203 ~~iDW~r~f~T~d~np~y~~~v~wqf~~L~ekG~I~~g~rpv~wcp~~~t~ladh 257 (1084)
T PLN02959 203 LGCDWRRSFITTDVNPYYDAFVRWQFRKLKKKGKIVKDKRYTIYSPLDGQPCADH 257 (1084)
T ss_pred ceEeCCCCcCCCCCChhHHHHHHHHHHHHHHCCCEEecCeeeeeCCCCCCCchhh
Confidence 8876 6677887 8999999999999999999999999999999999887663
|
|
| >KOG0435 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-38 Score=314.74 Aligned_cols=196 Identities=22% Similarity=0.284 Sum_probs=187.3
Q ss_pred CCCCCCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHH
Q 046127 84 GTEPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQA 163 (345)
Q Consensus 84 ~~~~~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~ 163 (345)
...++++ ||....|||+|.|||||.|-|+++|+++||+||+||+|++..|||.+|+|.+.+|.+.|+.|+.+...+++.
T Consensus 53 ~d~sk~K-YiLsMFPYPSG~LHiGHvRVYTIsD~laRf~rm~GynVihPMGWDaFGLPAENAAiergv~P~sWT~~NI~~ 131 (876)
T KOG0435|consen 53 SDKSKKK-YILSMFPYPSGALHIGHVRVYTISDILARFYRMKGYNVIHPMGWDAFGLPAENAAIERGVHPASWTINNIAK 131 (876)
T ss_pred cccCCCc-eEEEecCCCCCcccccceEEEEehHHHHHHHHhcCceeecCCcccccCCchhhHHHhcCCCchhhhHHHHHH
Confidence 3455666 888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCcccC--ccccCCChhhHHHHHHHHHHHHhCCCeeecccCcccccCCCCccchhhhhcCCcCCCCCCCceEe
Q 046127 164 YKTLWKDLDIAYD--KFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLYCVNCEEYKDEKELLENQCCPIHLKPCVAR 241 (345)
Q Consensus 164 ~~~~l~~lgI~~D--~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~~c~~~l~d~el~~~~~c~~~~~pve~r 241 (345)
|+++|++||+.|| +.+.|++|.|+.+.|++|.+|+++|++|+++..+.|||-+.|+|++.++-.+||+|++|.+||.+
T Consensus 132 Mk~Ql~~lg~~FDWdrEiSTC~PdYYKWTQwiFlkLfe~GLAYq~Ea~VNWDPvD~TVLAnEQVD~~G~SWRSGA~VEkK 211 (876)
T KOG0435|consen 132 MKQQLKSLGISFDWDREISTCEPDYYKWTQWIFLKLFEKGLAYQAEAEVNWDPVDKTVLANEQVDADGCSWRSGAKVEKK 211 (876)
T ss_pred HHHHHHHcCcccccccccccCCcchhHHHHHHHHHHHHhhhhhccccccccCcccceeecchhhcccCccccccchhhHH
Confidence 9999999999986 88899999999999999999999999999999999999999999999998889999999999999
Q ss_pred eccccccchhHhHHHHHHHHhcCCCcccChHHHHHHHHHHhc
Q 046127 242 KEDNYFFALSKYQKLLEDTLTENPDFVQPSFRLNEVQGWIKS 283 (345)
Q Consensus 242 ~~~~~f~~l~~~~~~L~e~l~~~~~~~~P~~~~~~~~~wl~~ 283 (345)
..+|||+++++|+++|.+.|+..++ ||+ ++++.+|||.+
T Consensus 212 ~LrQWfikttaYAk~L~d~L~~L~~--W~~-vk~mQrnWIG~ 250 (876)
T KOG0435|consen 212 KLRQWFIKTTAYAKRLLDGLETLPE--WPE-VKDMQRNWIGR 250 (876)
T ss_pred HHHHHHhhhhHHHHHHHHHHHhhhh--hhh-HHHHHHhhccc
Confidence 9999999999999999999998865 798 79999999974
|
|
| >PRK12300 leuS leucyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-35 Score=316.77 Aligned_cols=216 Identities=23% Similarity=0.317 Sum_probs=188.8
Q ss_pred CchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhC---------------CC---------CHHHHHHH
Q 046127 104 PHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADG---------------GS---------SPSEHCDV 159 (345)
Q Consensus 104 LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~---------------g~---------~p~~~~~~ 159 (345)
|||||+++++++|+++||+||+|++|.+++|||+||+||+..|++. |+ ++++++++
T Consensus 1 lHiGH~~~~t~~D~i~Ry~rm~G~~Vl~~~G~d~~GlPie~~ae~~~~~~~~~~~~~~~~~gi~~~~i~~f~~~~~~~~~ 80 (897)
T PRK12300 1 LHVGHGRTYTIGDVIARYKRMRGYNVLFPMAFHVTGTPILGIAERIARGDPETIELYKSLYGIPEEELEKFKDPEYIVEY 80 (897)
T ss_pred CccchhHHHHHHHHHHHHHHcCCCcCCCCCCCCCCCcCHHHHHHHhhccchhHHHHHHHHcCCCHHHHHHhcCHHHHHHH
Confidence 7999999999999999999999999999999999999999988642 33 46788999
Q ss_pred HHHHHHHHHhhcCcccC--ccccCCChhhHHHHHHHHHHHHhCCCeeecccCcccccCCCCccchhhh------------
Q 046127 160 VSQAYKTLWKDLDIAYD--KFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLYCVNCEEYKDEKEL------------ 225 (345)
Q Consensus 160 ~~~~~~~~l~~lgI~~D--~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~~c~~~l~d~el------------ 225 (345)
+.+.+++++++||+++| +-+.|+++.|.+.++++|.+|+++|+||++.+++.|||.|++.|+++|+
T Consensus 81 ~~~~~~~~~~~lG~~~DW~r~y~T~dp~y~~~v~w~F~~L~ekGliyrg~~~v~wcp~~~t~lad~e~~~~e~~~~~~~~ 160 (897)
T PRK12300 81 FSEEAKEDMKRIGYSIDWRREFTTTDPEYSKFIEWQFRKLKEKGLIVKGSHPVRYCPNDNNPVGDHDLLDGEEPEIVEYT 160 (897)
T ss_pred hHHHHHHHHHHhCcEEeCCCCeECCChhHHHHHHHHHHHHHHCCCEecCCEeeeeCCCCCCCchHHHHhcCCCCCcceEE
Confidence 99999999999999876 6677999999999999999999999999999999999999999976310
Q ss_pred --------------------------------------------------------------------------------
Q 046127 226 -------------------------------------------------------------------------------- 225 (345)
Q Consensus 226 -------------------------------------------------------------------------------- 225 (345)
T Consensus 161 ~ikf~~~~~~~l~~~TtrPeTl~g~tai~V~P~~~Y~~~~~~~e~~i~a~~~~~~~~~~~~~~~~~~~~~G~~l~G~~~~ 240 (897)
T PRK12300 161 LIKFEESEDLILPAATLRPETIFGVTNLWVNPDATYVKAEVDGEKWIVSKEAAEKLSFQDRDVEIIEEIKGSELIGKKVK 240 (897)
T ss_pred EEEEeCCCceEEEEEECCcchhccceEEEECCCCcEEEEEECCEEEEEeHHHHHHHhcCcCCceEEEEeehHHhcCCEEE
Confidence
Q ss_pred ------------------------------------------h-------------------------------------
Q 046127 226 ------------------------------------------L------------------------------------- 226 (345)
Q Consensus 226 ------------------------------------------~------------------------------------- 226 (345)
.
T Consensus 241 ~Pl~~~~ipil~~~~V~~~~GTGvV~~~Pah~~~Dy~~~~~~~~~~~~~~~l~~i~ii~v~~~g~~~a~~~~~~~~~~~~ 320 (897)
T PRK12300 241 NPVTGKEVPILPADFVDPDNGTGVVMSVPAHAPYDYVALRDLKKNKELLDVIEPIPLIEVEGYGEFPAKEVVEKLGIKSQ 320 (897)
T ss_pred CCCCCCeEEEeccCeeecCCCeeeEEeCCCCCHHHHHHHHHhccccccccccCCcceEecCCcCcccHHHHHHHhCCCCc
Confidence 0
Q ss_pred ------------------c----------------------------------------CCcCCCCCCCceEee-ccccc
Q 046127 227 ------------------E----------------------------------------NQCCPIHLKPCVARK-EDNYF 247 (345)
Q Consensus 227 ------------------~----------------------------------------~~~c~~~~~pve~r~-~~~~f 247 (345)
+ .+.|.|||+|++.+. ++|||
T Consensus 321 ~d~~l~~a~~~~y~~~f~~G~~~~~~g~~~G~~v~eA~~~I~~~L~~~g~~~~~~~~~~~~~~~R~~~~~i~~~~~~QWF 400 (897)
T PRK12300 321 EDPELEEATKEVYRAEFHKGVLKENTGEYAGKPVREAREKITKDLIEKGIADIMYEFSNRPVYCRCGTECVVKVVKDQWF 400 (897)
T ss_pred cchhHHHHHHHhhhccccceEEeecccCcCCeEHHHHHHHHHHHHHHCCCeEEEEecCCCCcCcCCCCEEEEEecCCceE
Confidence 0 012447888888876 49999
Q ss_pred cchh--HhHHHHHHHHhcCCCcccChHHHHHHHHHHhcCCCCcccccCCCCCCcccCCC--------CCCcEEEecCchh
Q 046127 248 FALS--KYQKLLEDTLTENPDFVQPSFRLNEVQGWIKSGLRDFSISRASVDWGIPVPND--------NKQTIYVWFDALL 317 (345)
Q Consensus 248 ~~l~--~~~~~L~e~l~~~~~~~~P~~~~~~~~~wl~~gL~D~~ISR~~~~WGIpvP~~--------~~~~iyVWfdal~ 317 (345)
++++ .+++++.+.+++. .+.|+..++.+.+||+ +|+||||||| .+||+|||.+ .+.++|+|+++.+
T Consensus 401 i~~~~~~~k~~~~~~~~~~--~~~P~~~~~~~~~~l~-~l~DW~ISRq-r~WGtpiP~~~~w~~esl~ds~iY~~~~~i~ 476 (897)
T PRK12300 401 IDYSDPEWKELAHKALDNM--EIIPEEYRKEFENTID-WLKDRACARR-RGLGTRLPWDEEWIIESLSDSTIYMAYYTIA 476 (897)
T ss_pred EEcCcHHHHHHHHHHHccC--EEECHHHHHHHHHHHh-hhhhcceeec-cccCCcCCccCCEEeeeccccchhhhHHHHH
Confidence 9997 7999999999876 4789999999999997 5999999998 5999999953 2568999999999
Q ss_pred HHHHhc
Q 046127 318 GYISAL 323 (345)
Q Consensus 318 gYls~~ 323 (345)
.|+...
T Consensus 477 ~~l~~~ 482 (897)
T PRK12300 477 HKIREY 482 (897)
T ss_pred HHHHHc
Confidence 998863
|
|
| >KOG0432 consensus Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=295.32 Aligned_cols=254 Identities=23% Similarity=0.364 Sum_probs=222.8
Q ss_pred CCCCCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHh----CC-C-----CHH
Q 046127 85 TEPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAAD----GG-S-----SPS 154 (345)
Q Consensus 85 ~~~~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~----~g-~-----~p~ 154 (345)
+.++..|.++-||||++|.||||||.+..+-|+++||.||.|+.|.++.|+|+.|...+...++ .+ + ..+
T Consensus 71 ~~~~~~f~i~~PPPNVTG~LHiGHALt~aiqD~i~R~~rm~G~~vlw~PG~DHAGIATQ~VVEK~l~~~~~~~Rh~lgRe 150 (995)
T KOG0432|consen 71 PNPGGVFVIPLPPPNVTGSLHIGHALTVAIQDALARYNRMHGYQVLWVPGTDHAGIATQVVVEKQLAREGGKTRHDLGRE 150 (995)
T ss_pred CCCCCcceeecCCCCcccccchhHHHHHHHHHHHHHHHHhcCCeeeecCCccccchhHHHHHHHHHHHhcCcchhhcCHH
Confidence 5578999999999999999999999999999999999999999999999999999988777765 22 2 222
Q ss_pred -------HHHHHHHHHHHHHHhhcCcccC--ccccCCChhhHHHHHHHHHHHHhCCCeeecccCcccccCCCCccchhhh
Q 046127 155 -------EHCDVVSQAYKTLWKDLDIAYD--KFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLYCVNCEEYKDEKEL 225 (345)
Q Consensus 155 -------~~~~~~~~~~~~~l~~lgI~~D--~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~~c~~~l~d~el 225 (345)
+|-+++...|.++|++||.++| +...|+|+.....|.+.|.+|++.|+||+..+-+.||+.-.+.++|-|+
T Consensus 151 ~F~~~vw~Wk~e~g~~I~~Qlk~lGas~DW~re~fTmD~~~s~AV~eAFvrL~eeglIyR~~rlVNW~~~L~saiSdiEV 230 (995)
T KOG0432|consen 151 EFLKEVWEWKEEYGGRIYNQLKRLGASLDWDREAFTMDPKLSRAVTEAFVRLHEEGLIYRANRLVNWCPALRSAISDIEV 230 (995)
T ss_pred HHHHHHHHHHHHhCccHHHHHHHhcCcccccHhhcccCHHHHHHHHHHHHHHHhcCceEecCceeeechhHHhhhhhhee
Confidence 4567778899999999999887 5566999999999999999999999999999999999999998877320
Q ss_pred h-------------------------------------------------------------------------------
Q 046127 226 L------------------------------------------------------------------------------- 226 (345)
Q Consensus 226 ~------------------------------------------------------------------------------- 226 (345)
.
T Consensus 231 e~~ei~~~t~l~vpGyd~~VeFG~L~~faY~v~gs~~~i~VaTTRpET~lGDvAvAVhP~D~RYk~lhGk~~~hP~~~r~ 310 (995)
T KOG0432|consen 231 ESVEIPGRTLLSVPGYDTKVEFGVLYSFAYPVEGSDEEIVVATTRPETILGDVAVAVHPDDDRYKHLHGKFVKHPFTGRK 310 (995)
T ss_pred cceecCCCceEecCCCCcceeeeeeeEEEEeccCCCCeEEEecCCccccccceeEEeCCCCcccccccCceeecCCCCCc
Confidence 0
Q ss_pred --------------------------------------------------------------------------------
Q 046127 227 -------------------------------------------------------------------------------- 226 (345)
Q Consensus 227 -------------------------------------------------------------------------------- 226 (345)
T Consensus 311 lPiI~D~~Vd~~fGTGaVKITPaHd~nDyEvgkRh~L~~~ni~~~dG~l~~~~gef~Gm~RFeAR~kvv~~L~e~gL~~g 390 (995)
T KOG0432|consen 311 LPIICDIAVDMEFGTGAVKITPAHDPNDYEVGKRHNLEFINIFTDDGLLNNVCGEFKGMKRFEAREKVVEKLKELGLYVG 390 (995)
T ss_pred cceeecccccccccccceEecCCCChhHHHHHHhcCCCceeEEcCCCceeccchhccCcHHHHHHHHHHHHHHHhhhhhc
Confidence
Q ss_pred --c----CCcCCCCCCCceEeeccccccchhHhHHHHHHHHhcCCCcccChHHHHHHHHHHhcCCCCcccccCCCCCCcc
Q 046127 227 --E----NQCCPIHLKPCVARKEDNYFFALSKYQKLLEDTLTENPDFVQPSFRLNEVQGWIKSGLRDFSISRASVDWGIP 300 (345)
Q Consensus 227 --~----~~~c~~~~~pve~r~~~~~f~~l~~~~~~L~e~l~~~~~~~~P~~~~~~~~~wl~~gL~D~~ISR~~~~WGIp 300 (345)
+ -+.|.++|.-+|.+-.+|||++++...++..+.++++...+.|+...++-.+|+. +.+||||||| ++||+.
T Consensus 391 ~~~h~mvlpiCSRsgDVIEpllkpQW~v~c~ema~~A~~av~sG~L~i~P~~~~k~w~~W~~-~i~DWCiSRQ-LWWGHr 468 (995)
T KOG0432|consen 391 KENHPMVLPICSRSGDVIEPLLKPQWFVSCKEMAKKALKAVESGKLEILPEFHEKEWYRWLE-NIRDWCISRQ-LWWGHR 468 (995)
T ss_pred cCCCceeccccCCCCCcccccccchheeehHHHHHHHHHHHhcCCeEECchHHHHHHHHHHh-hccccchhhh-hhhccc
Confidence 0 2569999999999999999999999999999999988777899999999999997 5999999999 999999
Q ss_pred cCC----------C-------------------------------CCCcEEEecCchhHHHHhcCCCCCCCchhhhhhCc
Q 046127 301 VPN----------D-------------------------------NKQTIYVWFDALLGYISALSEDRDQPSLRTAVSSG 339 (345)
Q Consensus 301 vP~----------~-------------------------------~~~~iyVWfdal~gYls~~~~~~~~~~~~~~~~~~ 339 (345)
||. + +..|+++||.+.+-.+|++|++.+. +++..|
T Consensus 469 IPAy~v~~~~~~~ee~~WvvarseeeA~ekaa~k~g~~~~~~L~qDpDVLDTWFSS~L~PfS~lGWP~~t----~d~~~f 544 (995)
T KOG0432|consen 469 IPAYFVNLSDGRAEEDYWVVARSEEEAREKAAEKFGPGKEFTLEQDPDVLDTWFSSGLWPFSTLGWPEET----KDFKNF 544 (995)
T ss_pred cceeeeecccCCCccceeEEeCCHHHHHHHHHHHhCCcccceeecCccHHHhhhhcccccchhcCCcccc----ccHHhc
Confidence 994 1 2579999999999999999999865 678888
Q ss_pred CCCCC
Q 046127 340 WPASL 344 (345)
Q Consensus 340 w~~~~ 344 (345)
+|-++
T Consensus 545 yP~sl 549 (995)
T KOG0432|consen 545 YPLSL 549 (995)
T ss_pred CCchh
Confidence 88764
|
|
| >KOG0434 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-31 Score=266.47 Aligned_cols=263 Identities=18% Similarity=0.250 Sum_probs=221.8
Q ss_pred cccCCCCC---CCCCCCCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHh-CC
Q 046127 75 SYATNTDK---SGTEPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAAD-GG 150 (345)
Q Consensus 75 ~~~~~~~~---~~~~~~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~-~g 150 (345)
|...+.|. +.+.++++|.+.++||.++|-+|-||+...++.|+..||.-+.||.|..-+|||+||+|++..-.+ .|
T Consensus 21 W~e~~aF~~slk~sk~rp~ftFyDGPPFATGlPHyGHiLa~TIKDiVtRya~~~G~hVeRRFGWD~HGlPVE~eIDKkLg 100 (1070)
T KOG0434|consen 21 WREIDAFHTSLKLSKGRPKFTFYDGPPFATGLPHYGHILASTIKDIVTRYATQTGHHVERRFGWDTHGLPVEYEIDKKLG 100 (1070)
T ss_pred HHHhhHHHHHHHhhCCCCceeeccCCccccCCCccchhhhhhHHHHHHHHhhccccceeeecccccCCCccceeechhcC
Confidence 55555552 245678999999999999999999999999999999999999999999999999999999876553 34
Q ss_pred CC----------------HHHHHHHHHHHHHHHHhhcC--cccCccccCCChhhHHHHHHHHHHHHhCCCeeecccCccc
Q 046127 151 SS----------------PSEHCDVVSQAYKTLWKDLD--IAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLY 212 (345)
Q Consensus 151 ~~----------------p~~~~~~~~~~~~~~l~~lg--I~~D~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~~~y 212 (345)
++ .+.++.+++.+.+++..+|| |+||+-|+|+++.+.+.|+++|++|.++|++|++-..+.|
T Consensus 101 I~g~~dV~kmGI~kYN~ECR~IVmrYssEWe~tv~RlGRWidF~ndYkTmyp~FMESvWwvFkeL~~kglVYRG~kVMP~ 180 (1070)
T KOG0434|consen 101 ITGRDDVMKMGIDKYNNECRKIVMRYSSEWEKTVERLGRWIDFDNDYKTLYPSFMESVWWVFKELHEKGLVYRGFKVMPY 180 (1070)
T ss_pred CCCHHHHHHHhHHhHhHHHHHHHHHHHHHHHHHHHhhccceeccCCcceecHHHHHHHHHHHHHHHhcCceecceeeecc
Confidence 32 34678899999999999999 7788999999999999999999999999999999999999
Q ss_pred ccCCCCccchhh--------------------------------------------------------------------
Q 046127 213 CVNCEEYKDEKE-------------------------------------------------------------------- 224 (345)
Q Consensus 213 c~~c~~~l~d~e-------------------------------------------------------------------- 224 (345)
+..|.+.|++-|
T Consensus 181 STac~TPLSNFEa~QNYKdV~DPav~v~F~li~~~~~slvAWTTTPWTLPSNlal~Vnp~~~Yvki~dk~~~k~yil~es 260 (1070)
T KOG0434|consen 181 STACTTPLSNFEAQQNYKDVPDPAVFVAFPLIGDPNVSLVAWTTTPWTLPSNLALCVNPDFQYVKIKDKTTGKKYILMES 260 (1070)
T ss_pred ccccCCcccchhcccCcccCCCCeEEEEeeccCCcceeEEEEecCCccCccceeEEEcCCeEEEEEEeccCCeEEEEeHH
Confidence 999999997510
Q ss_pred --------------------------------------------------------------------------------
Q 046127 225 -------------------------------------------------------------------------------- 224 (345)
Q Consensus 225 -------------------------------------------------------------------------------- 224 (345)
T Consensus 261 rl~~l~k~~~~~~~eiler~~G~~L~g~kYeplF~YF~~~~~~~aFrvl~d~yVt~~sGTGiVH~AP~FGe~Dy~~c~~~ 340 (1070)
T KOG0434|consen 261 RLGELYKNPKNDNYEILERFQGAALVGLKYEPLFPYFAETFEEGAFRVLSDDYVTEDSGTGIVHQAPAFGEEDYRACVAN 340 (1070)
T ss_pred HHHHHhcCcccccHHHHHhcccccccCcccCccchHHHHHhccCceEEeccCcEecCCCceeeecCCccChhhHHHHHHc
Confidence
Q ss_pred -------------------------------------h-----------------hcCCcCCCCCCCceEeeccccccch
Q 046127 225 -------------------------------------L-----------------LENQCCPIHLKPCVARKEDNYFFAL 250 (345)
Q Consensus 225 -------------------------------------l-----------------~~~~~c~~~~~pve~r~~~~~f~~l 250 (345)
+ +..+.||++.+|+.+|..++||++.
T Consensus 341 giI~~d~~~~cpVDe~G~~Tsev~dfaG~YVKDaDK~Ii~~lk~~g~lv~~~~i~HsYPFCWRSDTPLiYraVPsWFVrV 420 (1070)
T KOG0434|consen 341 GIIRKDSLPPCPVDESGLFTSEVTDFAGQYVKDADKLIIRSLKASGRLVKASQITHSYPFCWRSDTPLIYRAVPSWFVRV 420 (1070)
T ss_pred CcccCCCCCCCccccCCccccccccccceeeccchHHHHHHHHhcCceeeeeeeeeccCceecCCChHHHhhccHhhhhH
Confidence 0 0157899999999999999999999
Q ss_pred hHhHHHHHHHHhcCCCcccChHH-HHHHHHHHhcCCCCcccccCCCCCCcccCC----C---------------------
Q 046127 251 SKYQKLLEDTLTENPDFVQPSFR-LNEVQGWIKSGLRDFSISRASVDWGIPVPN----D--------------------- 304 (345)
Q Consensus 251 ~~~~~~L~e~l~~~~~~~~P~~~-~~~~~~wl~~gL~D~~ISR~~~~WGIpvP~----~--------------------- 304 (345)
+...++|++...+. .|.|..+ .++..|||++ .+||.|||. ..||.|||- |
T Consensus 421 k~~v~~ll~nn~~t--~WVP~~ikeKRF~NWL~n-ARDW~iSRn-R~WGTPIpLWVSdD~eevVcigSi~eLEeLSG~kI 496 (1070)
T KOG0434|consen 421 KNIVDQLLRNNMKT--HWVPQNIKEKRFANWLKN-ARDWNISRN-RYWGTPIPLWVSDDYEEVVCIGSIKELEELSGVKI 496 (1070)
T ss_pred HHHHHHHHhccccc--ccCChhhhHHHHHHHHhh-hhhcccccc-cccCCCcceEEccCCceEEEeccHHHHHHhcCCcc
Confidence 99999999998877 3556654 5667899985 899999995 799999992 1
Q ss_pred ------------------------CCCcEEEecCchhHHHHhcCCCCCCCchhhhhhCcCCCCC
Q 046127 305 ------------------------NKQTIYVWFDALLGYISALSEDRDQPSLRTAVSSGWPASL 344 (345)
Q Consensus 305 ------------------------~~~~iyVWfdal~gYls~~~~~~~~~~~~~~~~~~w~~~~ 344 (345)
-..|++-|||+..+..+...++-++ .++|.+-.|+++
T Consensus 497 tDlHRe~iD~itIps~~gkg~l~Rv~eVfDCWFESGSMPYAq~HyPFen---k~~fe~~fPadF 557 (1070)
T KOG0434|consen 497 TDLHRESIDHITIPSKKGKGVLHRVSEVFDCWFESGSMPYAQRHYPFEN---KEEFEENFPADF 557 (1070)
T ss_pred hhhhhhhcCceecccCCCCcceehhhhHhhhhhccCCCcchhhcCCccc---hHHHhhcCchHh
Confidence 0457888999998877777776553 377888888763
|
|
| >KOG0433 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-29 Score=254.14 Aligned_cols=211 Identities=22% Similarity=0.327 Sum_probs=182.0
Q ss_pred CCCCCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHH-HHHHh------CCCCH----
Q 046127 85 TEPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIA-AAAAD------GGSSP---- 153 (345)
Q Consensus 85 ~~~~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~-~~A~~------~g~~p---- 153 (345)
..++..|++.+ +||.|||||+++.|..|++.|++.+.|.++.++.|+|+||+||+ .+|-+ ..++|
T Consensus 55 ~~q~~~f~L~d----anG~lhlghalnkILkdIinr~~laqg~~alyvpGwDchGLPiEs~kalssl~~~~~~~s~leiR 130 (937)
T KOG0433|consen 55 DQQRVEFELKD----ANGNLHLGHALNKILKDIINRILLAQGKSALYVPGWDCHGLPIESTKALSSLTESEGSRTPLEIR 130 (937)
T ss_pred hccCceEEEec----cCCCccchHHHHHHHHHHHHHHHHhcCceeccCCCCCcCCCchHHHHHhhhhhhccccCCcHHHH
Confidence 34567788777 89999999999999999999999999999999999999999999 45543 22344
Q ss_pred ---HHHHHHHHHHHHHHHhhcCcccC--ccccCCChhhHHHHHHHHHHHHhCCCeeecccCcccccCCCCccchhhhh--
Q 046127 154 ---SEHCDVVSQAYKTLWKDLDIAYD--KFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLYCVNCEEYKDEKELL-- 226 (345)
Q Consensus 154 ---~~~~~~~~~~~~~~l~~lgI~~D--~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~~c~~~l~d~el~-- 226 (345)
+.++++-++.+++.+.++||.-| +-|-|.++.|+....++|.+|+++|+|||...+++|+|+..+.|++.|++
T Consensus 131 ~~Ar~fA~~AIk~Q~e~F~r~gv~aDW~n~Y~T~~~~ye~aQL~iF~~lyekgLvyR~~KPVyWSpSSRTALAEaELEYn 210 (937)
T KOG0433|consen 131 AKARIFADEAIKKQMEAFRRWGVTADWENPYVTKSPSYEAAQLDIFAKLYEKGLVYRSFKPVYWSPSSRTALAESELEYN 210 (937)
T ss_pred HHHHHHHHHHHHHHHHHHHHheeeccCCCceeecChHHHHHHHHHHHHHHhccceeccCCcceecCcchhhhhhhhccCC
Confidence 35778889999999999999766 67779999999999999999999999999999999999999999764210
Q ss_pred --------------------------------------------------------------------------------
Q 046127 227 -------------------------------------------------------------------------------- 226 (345)
Q Consensus 227 -------------------------------------------------------------------------------- 226 (345)
T Consensus 211 ~nH~S~S~Y~~F~L~~~S~~~~~~~~~~~~iyaLVWTTTPWTlPsN~Ai~~n~~~~Yslv~~~~~~~~~~ylvas~L~~~ 290 (937)
T KOG0433|consen 211 DNHQSTSAYFRFKLINFSSSAHSEDSKIPQIYALVWTTTPWTLPSNNAISVNSAIQYSLVQFDNNPTSTFYLVASKLLEE 290 (937)
T ss_pred cCCcceeEEEEEeccCCccccccCCCccCcEEEEEEeCCCccccccceeeeccccceEEEEeccCCcceEEEEccchhhh
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 046127 227 -------------------------------------------------------------------------------- 226 (345)
Q Consensus 227 -------------------------------------------------------------------------------- 226 (345)
T Consensus 291 fe~~~~~k~~i~~t~~g~~L~~~~Y~~pl~~~~~~P~l~g~hVT~~~GTGLVHTAP~HG~eDYlv~l~~~l~~~s~VD~~ 370 (937)
T KOG0433|consen 291 FEKSSDRKCKIVGTVKGANLIGRRYKHPLHNELGLPILEGPHVTDTVGTGLVHTAPAHGFEDYLVAISKGLRVESFVDSR 370 (937)
T ss_pred hhhhcCcceeeeeecchhhccCceecCcCccccCCccccccceecCcccceeecCCCCChHHHHHHhhcCCCcccccCCC
Confidence
Q ss_pred ----------------------------------------cCCcCCCCCCCceEeeccccccchhHhHHHHHHHHhcCCC
Q 046127 227 ----------------------------------------ENQCCPIHLKPCVARKEDNYFFALSKYQKLLEDTLTENPD 266 (345)
Q Consensus 227 ----------------------------------------~~~~c~~~~~pve~r~~~~~f~~l~~~~~~L~e~l~~~~~ 266 (345)
.+++-|+..+|+.+|.++|||.++++++....+.+++..
T Consensus 371 G~yT~ea~~~l~Gk~VL~eG~k~vl~~l~~~iv~~sky~HsYPYDWRTKKPvIiRAseQWFi~~e~~k~~A~~al~~Vk- 449 (937)
T KOG0433|consen 371 GCYTREAGHDLDGKEVLGEGQKIVLRLLNHDIVHVSKYVHSYPYDWRTKKPVIIRASEQWFIDVEEIKKRASMALDDVK- 449 (937)
T ss_pred CceecccccccccchhhccccHhHHHHHhhhhhhhhcccccCCcccccCCceEEecchhheeeHHhhhhHHHHHHhhce-
Confidence 134566777899999999999999999999999999873
Q ss_pred cccChHHHHHHHHHHhcCCCCcccccCCCCCCcccCC
Q 046127 267 FVQPSFRLNEVQGWIKSGLRDFSISRASVDWGIPVPN 303 (345)
Q Consensus 267 ~~~P~~~~~~~~~wl~~gL~D~~ISR~~~~WGIpvP~ 303 (345)
+.|....+.+..++. +.++|||||| .-||+|||.
T Consensus 450 -~~P~~~~~rl~~~~~-~R~~WCISRQ-R~WGvPIP~ 483 (937)
T KOG0433|consen 450 -VAPGDSDLRLKQLVT-TRPSWCISRQ-RVWGVPIPA 483 (937)
T ss_pred -eCCcchHHHHHHHHc-CCCcceeeec-cccCCccee
Confidence 577777888889996 5799999999 499999993
|
|
| >PTZ00399 cysteinyl-tRNA-synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.4e-26 Score=237.20 Aligned_cols=191 Identities=19% Similarity=0.277 Sum_probs=158.6
Q ss_pred CCCCCCCCCCCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHH-HcCCeEEEEcCCCCcChHHHHHHHhCCCC-HHHH
Q 046127 79 NTDKSGTEPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQR-LLGKKVIFITGTDEHGEKIAAAAADGGSS-PSEH 156 (345)
Q Consensus 79 ~~~~~~~~~~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr-~~G~~V~~v~G~D~~G~~I~~~A~~~g~~-p~~~ 156 (345)
..|.+..++.-++|+|+|.+| +.+||||+|++|.+|+++||++ +.||+|.|++|+||||++|+.+|++.|++ +.++
T Consensus 51 ~~f~p~~~~~v~~Y~CGPTvY--d~~HiGhart~v~~Dil~R~l~~~~Gy~V~~v~nitDidDKIi~~A~~~g~~~~~el 128 (651)
T PTZ00399 51 VEFVPQNGRQVRWYTCGPTVY--DSSHLGHARTYVTFDIIRRILEDYFGYDVFYVMNITDIDDKIIKRAREEKLSIFLEL 128 (651)
T ss_pred cccccCCCCeeEEEEeCCCcc--CCcccccchHHHHHHHHHHHHHHhcCCceEEEeCCCCcchHHHHHHHHhCCCcHHHH
Confidence 344433455677888888777 9999999999999999999999 99999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHHHhhcCcccCccccCCChhhHHHHHHHHHHHHhCCCeeecccCcccccCCCCccchhhhhcCCcCCCCCC
Q 046127 157 CDVVSQAYKTLWKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLYCVNCEEYKDEKELLENQCCPIHLK 236 (345)
Q Consensus 157 ~~~~~~~~~~~l~~lgI~~D~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~~c~~~l~d~el~~~~~c~~~~~ 236 (345)
++++.+.|.++|++|||.++.++++. ..|...+.+++++|+++|++|+.++
T Consensus 129 ~~~~~~~f~~d~~~Lni~~p~~~~r~-tehi~~ii~~i~~Li~~G~aY~~~g---------------------------- 179 (651)
T PTZ00399 129 ARKWEKEFFEDMKALNVRPPDVITRV-SEYVPEIVDFIQKIIDNGFAYESNG---------------------------- 179 (651)
T ss_pred HHHHHHHHHHHHHHcCCCCCccccCc-CccHHHHHHHHHHHHHCCCEEEECC----------------------------
Confidence 99999999999999999987666555 4899999999999999999997621
Q ss_pred CceEeeccccccchhHhHHHHHHHHhcCCCcccChHHHHHHHHHHhcC-CCCcc-cccCCCC---CCcccCCCCCCcEEE
Q 046127 237 PCVARKEDNYFFALSKYQKLLEDTLTENPDFVQPSFRLNEVQGWIKSG-LRDFS-ISRASVD---WGIPVPNDNKQTIYV 311 (345)
Q Consensus 237 pve~r~~~~~f~~l~~~~~~L~e~l~~~~~~~~P~~~~~~~~~wl~~g-L~D~~-ISR~~~~---WGIpvP~~~~~~iyV 311 (345)
++||++++|.+. ...+.. +.|....+....+..++ +.+-+ ++|...+ ||++.|+++.
T Consensus 180 --------svyFd~~~f~~~-~~~Yg~----L~p~~~~~~~~~~~g~~~l~~~~~~Kr~~~DFaLWk~~kpgep~----- 241 (651)
T PTZ00399 180 --------SVYFDVEAFRKA-GHVYPK----LEPESVADEDRIAEGEGALGKVSGEKRSPNDFALWKASKPGEPS----- 241 (651)
T ss_pred --------eEEEEchhcccc-hhhHHh----hChhhcCCHHHHhcccCCccccCcCCCCCccHHhhCCCCCCCCC-----
Confidence 799999999877 555554 35665555566566665 65665 8997567 9999998764
Q ss_pred ecCchhHH
Q 046127 312 WFDALLGY 319 (345)
Q Consensus 312 Wfdal~gY 319 (345)
|+ +++|+
T Consensus 242 W~-SpwG~ 248 (651)
T PTZ00399 242 WD-SPWGK 248 (651)
T ss_pred CC-CCCCC
Confidence 65 66665
|
|
| >PRK01611 argS arginyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.2e-26 Score=233.50 Aligned_cols=182 Identities=16% Similarity=0.145 Sum_probs=154.4
Q ss_pred chHHHHHH----HHHHHhhchhcchhhccccccccccccc-ccccccccccccccccccccccCCCCCCC-CCCCCCEEE
Q 046127 20 SLQKEFEE----MAARINYSIQNSLWLLNPLHSKATTHFR-NRLKFRQNLFSLSKGAVFCSYATNTDKSG-TEPADPFVL 93 (345)
Q Consensus 20 ~~~k~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~I 93 (345)
.|+|.+++ ||++|+.. | +.++..+ |++||.+++..............+.++.. +..+++++|
T Consensus 48 ~lak~~~~~p~~ia~~i~~~------i------~~v~~~~~gfiN~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~I 115 (507)
T PRK01611 48 QLAKKLKKNPREIAEEIVEA------I------EKVEIAGPGFINFFLDPAALAELVLAILEAGERYGRSDIGKGKKVVV 115 (507)
T ss_pred HHHHHcCCCHHHHHHHHHhh------e------eEEEEeCCCEEEEEECHHHHHHHHHHHHhchhhcCCCcCCCCCEEEE
Confidence 46677755 88888775 3 5567776 59999999866554433334444556532 346789999
Q ss_pred EccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhcCc
Q 046127 94 TTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKDLDI 173 (345)
Q Consensus 94 ~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~~lgI 173 (345)
++++|||||++||||+|+++++|+++|++++.||+|.++.++||+|++|...+...+..++++++.+.+.|+++|++|||
T Consensus 116 e~~spnp~g~lHiGH~R~~iigD~laR~lr~~G~~V~~~~~i~D~G~qi~~~a~~~~~~~~~~~~~~~~~~~~~l~~LgI 195 (507)
T PRK01611 116 EYVSANPTGPLHVGHLRSAVIGDALARILEFAGYDVTREYYVNDAGTQIGMLIASLELLWRKAVDISLDEIKEDLDRLGV 195 (507)
T ss_pred EecCCCCCCCCcCCchHHHHHHHHHHHHHHHcCCcEEEEeeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999888888899999999999999999999
Q ss_pred ccCccccCCChhhHHHHHHHHHHHHhCCCee-ecccCcccc
Q 046127 174 AYDKFIRTTEPKHEAIVKEFYSSVLANGDIY-KADYEGLYC 213 (345)
Q Consensus 174 ~~D~f~~T~~~~~~~~v~~~~~~L~~kG~iy-~~~~~~~yc 213 (345)
.+|.|.++++..+.+.+++++++|.++|++| +.++.+|++
T Consensus 196 ~~D~~~~es~~~~~~~~~~~~~~L~~~G~~y~~~~Ga~~~~ 236 (507)
T PRK01611 196 HFDVWFSESELYYNGKVDEVVEDLKEKGLLYVESDGALWVR 236 (507)
T ss_pred eeeEEeecCcchhcchHHHHHHHHHHCCCEEEeeCCcEEEE
Confidence 9999988888878889999999999999999 777766665
|
|
| >cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.2e-25 Score=202.11 Aligned_cols=125 Identities=15% Similarity=0.140 Sum_probs=116.4
Q ss_pred CEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Q 046127 90 PFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWK 169 (345)
Q Consensus 90 ~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~ 169 (345)
+++|++++|||||+|||||+|+++++|+++|++++.|++|.+++++||+|++|...|.+.+ .++++++.+.+.++++++
T Consensus 1 ~v~ve~~spN~~~~~HiGH~R~~vigD~l~R~l~~~G~~V~~~~~~~D~G~qi~~~a~~~~-~~~~~~~~~~~~~~~~~~ 79 (212)
T cd00671 1 KILVEFVSANPTGPLHVGHLRNAIIGDSLARILEFLGYDVTREYYINDWGRQIGLLILSLE-KWRKLVEESIKADLETYG 79 (212)
T ss_pred CeEEEecCCCCCCCccccccHHHHHHHHHHHHHHHCCCcEEEEeccCCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999999999999999999999999999999999999997664 489999999999999999
Q ss_pred hcCcccCccccCCChhhHHHHHHHHHHHHhCCCeeecccCcccccCCC
Q 046127 170 DLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLYCVNCE 217 (345)
Q Consensus 170 ~lgI~~D~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~~c~ 217 (345)
+|||.+|.|.+|++ +...+.+++++|.++|++|+.++.+++|+.+.
T Consensus 80 ~L~i~~d~~~~es~--~~~~~~~~i~~L~~~g~~~~~~g~~~~~~~~~ 125 (212)
T cd00671 80 RLDVRFDVWFGESS--YLGLMGKVVELLEELGLLYEEDGALWLDLTEF 125 (212)
T ss_pred HhCCcCceecchhh--hhhHHHHHHHHHHHCCCEEEeCCcEEEechhh
Confidence 99999999998885 48899999999999999999999888886544
|
Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine. |
| >TIGR00435 cysS cysteinyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.5e-24 Score=217.03 Aligned_cols=130 Identities=25% Similarity=0.327 Sum_probs=118.9
Q ss_pred CCCCCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHH
Q 046127 85 TEPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAY 164 (345)
Q Consensus 85 ~~~~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~ 164 (345)
.+++.++++|.| ||+|++||||+|++|.+|+++||+|++||+|.+++|+||||++|+.+|++.|++|+++++.+.+.|
T Consensus 18 ~~~~v~~yvcgp--tvy~~~HiGhar~~v~~Dvl~R~lr~~G~~V~~v~n~tD~ddkIi~~A~~~g~~~~e~a~~~~~~f 95 (465)
T TIGR00435 18 VQGKVKMYVCGP--TVYDYCHIGHARTAIVFDVLRRYLRYLGYKVQYVQNITDIDDKIIKRARENGESVYEVSERFIEAY 95 (465)
T ss_pred CCCcceEEEecC--ccCCCcccccchHHHHHHHHHHHHHHcCCcEEEEEeeCCccHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 344566676666 677999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCcccCcc-ccCCChhhHHHHHHHHHHHHhCCCeeecc-cCcccccCCCC
Q 046127 165 KTLWKDLDIAYDKF-IRTTEPKHEAIVKEFYSSVLANGDIYKAD-YEGLYCVNCEE 218 (345)
Q Consensus 165 ~~~l~~lgI~~D~f-~~T~~~~~~~~v~~~~~~L~~kG~iy~~~-~~~~yc~~c~~ 218 (345)
+++|++|||.+|.+ .+++ .|.+.+.+++++|.++|++|+.+ +.++||+.|..
T Consensus 96 ~~dl~~LgI~~d~~~~raT--~hi~~i~~~i~~L~ekG~aY~~~~g~vyfdv~~~~ 149 (465)
T TIGR00435 96 FEDMKALNVLPPDLEPRAT--EHIDEIIEFIEQLIEKGYAYVSDNGDVYFDVSKFK 149 (465)
T ss_pred HHHHHHhCCCCCcCCcccc--ccHHHHHHHHHHHHHCCCEEEecCCcEEEeccccc
Confidence 99999999999975 4555 79999999999999999999999 99999998854
|
This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln). |
| >PRK00260 cysS cysteinyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.1e-24 Score=216.57 Aligned_cols=128 Identities=23% Similarity=0.310 Sum_probs=117.2
Q ss_pred CCCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 046127 87 PADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKT 166 (345)
Q Consensus 87 ~~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~ 166 (345)
+..++++|.| ||+|++||||+|+++.+|+++||+|++|++|.+++|+||+|++|+..|++.|++|+++++.+.+.|++
T Consensus 22 ~~v~~yvcgP--tvy~~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~tD~ddki~~~A~~~g~~~~e~~~~~~~~f~~ 99 (463)
T PRK00260 22 GKVKMYVCGP--TVYDYAHIGHARSFVVFDVLRRYLRYLGYKVTYVRNITDIDDKIIKRANEEGESIKELTERYIAAFHE 99 (463)
T ss_pred CcceEEEeCC--ccCCCcccccchhHHHHHHHHHHHHhcCCceEEeecCCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 3456666655 56699999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCc-ccCccccCCChhhHHHHHHHHHHHHhCCCeeecccCcccccCCCC
Q 046127 167 LWKDLDI-AYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLYCVNCEE 218 (345)
Q Consensus 167 ~l~~lgI-~~D~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~~c~~ 218 (345)
+|++||| .+|.+.+++ .|.+.+.+++++|.++|++|+++++++||++.-.
T Consensus 100 ~~~~Lgi~~~d~~~r~t--~~~~~~~~~i~~L~~kG~aY~~~~~Vyfdv~~~~ 150 (463)
T PRK00260 100 DMDALNVLPPDIEPRAT--EHIPEIIELIERLIDKGHAYEADGDVYFDVRKFP 150 (463)
T ss_pred HHHHcCCCCCCcccccc--ccHHHHHHHHHHHHHCCCEEEecCeEEEeccccc
Confidence 9999999 568887777 5899999999999999999999999999988753
|
|
| >TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.4e-24 Score=211.15 Aligned_cols=128 Identities=18% Similarity=0.264 Sum_probs=119.0
Q ss_pred CCCCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHH
Q 046127 86 EPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYK 165 (345)
Q Consensus 86 ~~~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~ 165 (345)
++.-+++||.|.|| +++||||+|++|.+|+++||+|+.|++|.|++|+||||++|+.+|++.|++|+++++++.+.|+
T Consensus 34 ~~~v~~YvCGpTvY--~~~HIGhart~V~~Dvl~R~lr~~G~~V~fV~nitD~dDKIi~~A~~~g~t~~ela~~y~~~f~ 111 (411)
T TIGR03447 34 GPEAGMYVCGITPY--DATHLGHAATYLTFDLVNRVWRDAGHRVHYVQNVTDVDDPLFERAERDGVDWRELGTSQIDLFR 111 (411)
T ss_pred CCcceEEEeCCccC--CCcccccchHHHHHHHHHHHHHhcCCceEEeeCCCchhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 45678888888877 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCcc-cCccccCCChhhHHHHHHHHHHHHhCCCeeeccc----CcccccCCC
Q 046127 166 TLWKDLDIA-YDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADY----EGLYCVNCE 217 (345)
Q Consensus 166 ~~l~~lgI~-~D~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~----~~~yc~~c~ 217 (345)
+++++|||. +|.|+++++ +.+.+++++++|.++|++|++++ .+||+++--
T Consensus 112 ~d~~~Lni~~~d~~~RaTe--~i~~ii~~i~~L~~kG~aY~~~~~~~~~VYFdv~~~ 166 (411)
T TIGR03447 112 EDMEALRVLPPRDYIGAVE--SIDEVIEMVEKLLAAGAAYEVEGPEYPDVYFSIEAT 166 (411)
T ss_pred HHHHHcCCCCCCcccCCCC--CHHHHHHHHHHHHHCCCEEecCCCCcCcEEEeccch
Confidence 999999986 899999996 48999999999999999999987 699976553
|
Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione. |
| >PRK12418 cysteinyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=5e-24 Score=208.82 Aligned_cols=126 Identities=19% Similarity=0.283 Sum_probs=118.0
Q ss_pred CCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 046127 88 ADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTL 167 (345)
Q Consensus 88 ~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~ 167 (345)
.-++++|.|.|| +++||||+|++|.+|+++||+|++|++|.+++|+||||++|+.+|++.|++|+++++++.+.|.++
T Consensus 9 ~v~~YvCGpTvY--~~~HIGh~r~~V~~Dvl~R~lr~~G~~V~~V~nitD~ddKIi~~A~~~G~~~~e~a~~~~~~f~~d 86 (384)
T PRK12418 9 TATMYVCGITPY--DATHLGHAATYLAFDLVNRVWRDAGHDVHYVQNVTDVDDPLLERAARDGVDWRDLAEREIALFRED 86 (384)
T ss_pred eeEEEecCCCCC--CCCccchhHHHHHHHHHHHHHHHcCCceEEEEecCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 457788877777 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCc-ccCccccCCChhhHHHHHHHHHHHHhCCCeeeccc----CcccccCCC
Q 046127 168 WKDLDI-AYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADY----EGLYCVNCE 217 (345)
Q Consensus 168 l~~lgI-~~D~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~----~~~yc~~c~ 217 (345)
+++||| .+|.|+++|+ +.+.+++++++|.++|++|++++ .+||+++--
T Consensus 87 ~~~Lni~~~~~~~raTe--~i~~~~~~i~~L~~kG~aY~~~~~~~~~VYFdv~~~ 139 (384)
T PRK12418 87 MEALRVLPPRDYVGAVE--SIPEVVELVEKLLASGAAYVVDDEEYPDVYFSVDAT 139 (384)
T ss_pred HHHhCCCCCCccccCCC--CHHHHHHHHHHHHHCCCEEEeCCCCCccEEEecCch
Confidence 999997 7899999996 59999999999999999999998 799986654
|
|
| >PLN02946 cysteine-tRNA ligase | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.1e-23 Score=212.22 Aligned_cols=129 Identities=18% Similarity=0.228 Sum_probs=117.4
Q ss_pred CCCCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHH
Q 046127 86 EPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYK 165 (345)
Q Consensus 86 ~~~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~ 165 (345)
++.-++|+| .|+|.|++||||+|++|.+|+++||+++.||+|.+++|+||||++|+.+|++.|++++++++++.+.|.
T Consensus 78 ~~~v~~Y~C--GpTvYd~~HIGhaR~~V~~Dvl~R~Lr~~Gy~V~~V~niTDiDDKIi~~A~~~g~~~~ela~~y~~~f~ 155 (557)
T PLN02946 78 EGKVGMYVC--GVTAYDLSHIGHARVYVTFDVLYRYLKHLGYEVRYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFL 155 (557)
T ss_pred CCceeEEEe--CCccCCCCccccchhhHHHHHHHHHHHhcCCcEEEEECCCCccCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 344555655 456779999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCcccCccccCCChhhHHHHHHHHHHHHhCCCeeecccCcccccCCC
Q 046127 166 TLWKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLYCVNCE 217 (345)
Q Consensus 166 ~~l~~lgI~~D~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~~c~ 217 (345)
+++++|||. +.+++|....|.+.+.+++++|+++|++|++++.+|||++--
T Consensus 156 ~d~~~LnI~-~p~~~pratehi~~ii~~i~~Li~kG~aY~~~g~VYFdv~~f 206 (557)
T PLN02946 156 SDMAYLHCL-PPSVEPRVSDHIPQIIDMIKQILDNGCAYRVDGDVYFSVDKF 206 (557)
T ss_pred HHHHHCCCC-CCCeecCcchhHHHHHHHHHHHHHCCCEEEECCeEEEecCcc
Confidence 999999998 545667777999999999999999999999999999998753
|
|
| >PRK14536 cysS cysteinyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.4e-22 Score=202.39 Aligned_cols=126 Identities=19% Similarity=0.188 Sum_probs=113.5
Q ss_pred CCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEc----------CCCCcChHHHHHHHhCCCCHHHHHH
Q 046127 89 DPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFIT----------GTDEHGEKIAAAAADGGSSPSEHCD 158 (345)
Q Consensus 89 ~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~----------G~D~~G~~I~~~A~~~g~~p~~~~~ 158 (345)
.++-+.+..|||++++||||+|++|.+|+++||+++.|++|.|++ |.|+||++|..+|++.|++|+++++
T Consensus 22 ~~v~mYvCGpTvy~~~HiGhar~~v~~Dvl~R~l~~~G~~V~~v~NiTDv~hl~~~~De~ddKii~~A~~~g~~~~e~a~ 101 (490)
T PRK14536 22 GHVRLYGCGPTVYNYAHIGNLRTYVFQDTLRRTLHFLGYRVTHVMNITDVGHLTDDADSGEDKMVKSAQEHGKSVLEIAA 101 (490)
T ss_pred CceEEEeeCCccCCCcccchhHHHHHHHHHHHHHHhcCCceEEEEeeccccccccCCcCCChHHHHHHHHcCCCHHHHHH
Confidence 345555556678899999999999999999999999999999997 6677799999999999999999999
Q ss_pred HHHHHHHHHHhhcCcccCccccCCChhhHHHHHHHHHHHHhCCCeeecccCcccccC
Q 046127 159 VVSQAYKTLWKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLYCVN 215 (345)
Q Consensus 159 ~~~~~~~~~l~~lgI~~D~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~~ 215 (345)
++.+.|.+++++|||.++.++ +..+.|.+.+++++++|.++|++|++++.+|||++
T Consensus 102 ~~~~~f~~d~~~Lni~~~~~~-~rat~hi~~ii~~i~~L~~kG~aY~~~~~vyFdv~ 157 (490)
T PRK14536 102 HYTAAFFRDTARLNIERPSIV-CNATEHIQDMIALIKRLEARGHTYCAGGNVYFDIR 157 (490)
T ss_pred HHHHHHHHHHHHcCCCCCcee-cCcccHHHHHHHHHHHHHHCCCEEEECCeEEEeCC
Confidence 999999999999999997554 33468999999999999999999999999999983
|
|
| >PRK14535 cysS cysteinyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.8e-22 Score=205.75 Aligned_cols=130 Identities=20% Similarity=0.217 Sum_probs=117.3
Q ss_pred CCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 046127 88 ADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTL 167 (345)
Q Consensus 88 ~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~ 167 (345)
+.++-+....|+|.+.+||||+|++|.+|+++||+++.|++|.+++|+||||++|+.+|++.|++++++++++.+.|.++
T Consensus 246 ~~~V~mYvCGPTVYd~~HIGHaRt~V~~DVL~R~Lr~~Gy~V~fV~NiTD~DDKII~~A~e~G~sp~ela~~y~~~F~~d 325 (699)
T PRK14535 246 PENVRMYVCGMTVYDYCHLGHARVMVVFDMIARWLRECGYPLTYVRNITDIDDKIIARAAENGETIGELTARFIQAMHED 325 (699)
T ss_pred CCceEEEecCCcCCCCCcccchhHHHHHHHHHHHHHHcCCceEEEeCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 34455555556777999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCcccCccccCCChhhHHHHHHHHHHHHhCCCeeec-ccCcccccCCCC
Q 046127 168 WKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKA-DYEGLYCVNCEE 218 (345)
Q Consensus 168 l~~lgI~~D~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~-~~~~~yc~~c~~ 218 (345)
+++|||.++.+. ++...|...+.+++++|.++|++|++ .+.+|||+++-.
T Consensus 326 ~~~LnI~~p~~~-praTeHI~~ii~lI~~LidkG~AYe~~~gsVYFdV~~f~ 376 (699)
T PRK14535 326 ADALGVLRPDIE-PKATENIPQMIAMIETLIQNGKAYPAANGDVYYAVREFA 376 (699)
T ss_pred HHHcCCCCCcEe-eCccchHHHHHHHHHHHHHCCCEEEeCCCCEEEeccccc
Confidence 999999998763 55569999999999999999999987 458999998753
|
|
| >cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.9e-22 Score=179.47 Aligned_cols=94 Identities=24% Similarity=0.304 Sum_probs=89.0
Q ss_pred CCCCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHH
Q 046127 86 EPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYK 165 (345)
Q Consensus 86 ~~~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~ 165 (345)
+++.+++++.|.|| |++||||+|+++.+|+++||+|++|++|.+++|+|+||+||+.+|++.|++|+++++++.+.|+
T Consensus 18 ~~~~~~y~~gpt~y--~~~HiGH~r~~v~~Dvl~R~lr~~G~~V~~~~g~dd~g~ki~~~A~~~g~~p~e~~~~~~~~f~ 95 (213)
T cd00672 18 PGLVTMYVCGPTVY--DYAHIGHARTYVVFDVLRRYLEDLGYKVRYVQNITDIDDKIIKRAREEGLSWKEVADYYTKEFF 95 (213)
T ss_pred CCCceEEEeCCccC--CCcccccchhHHHHHHHHHHHHhcCCeeEEEeecCCCCCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 35667888877766 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCccc-CccccC
Q 046127 166 TLWKDLDIAY-DKFIRT 181 (345)
Q Consensus 166 ~~l~~lgI~~-D~f~~T 181 (345)
+++++|||++ |.|++|
T Consensus 96 ~~~~~l~i~~~d~~~rt 112 (213)
T cd00672 96 EDMKALNVLPPDVVPRV 112 (213)
T ss_pred HHHHHcCCCCCCcceee
Confidence 9999999999 999998
|
Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. |
| >PRK14534 cysS cysteinyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.1e-21 Score=192.71 Aligned_cols=127 Identities=23% Similarity=0.238 Sum_probs=114.2
Q ss_pred CEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEE---------cCC-CCcChHHHHHHHhCCCCHHHHHHH
Q 046127 90 PFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFI---------TGT-DEHGEKIAAAAADGGSSPSEHCDV 159 (345)
Q Consensus 90 ~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v---------~G~-D~~G~~I~~~A~~~g~~p~~~~~~ 159 (345)
++-+....|||...+||||+|++|.+|+++||++++|++|.++ +|. |+||++|+.+|++.|+++++++++
T Consensus 21 ~v~mY~CGpTVYd~~HiGh~r~~v~~Dvl~R~l~~~G~~V~~v~NiTDIghltg~~D~gddKIi~~A~~~g~~~~e~a~~ 100 (481)
T PRK14534 21 DVKVYACGPTVYNYAHIGNFRTYIFEDLLIKSLRLLKYNVNYAMNITDIGHLTGDFDDGEDKVVKAARERGLTVYEISRF 100 (481)
T ss_pred ceEEEeCCCCCCCCCCccchhHHHHHHHHHHHHHHcCCceEEEEeccccccccCCccCCCcHHHHHHHHcCCCHHHHHHH
Confidence 4555555567779999999999999999999999999999995 444 344899999999999999999999
Q ss_pred HHHHHHHHHhhcCcccCccccCCChhhHHHHHHHHHHHHhCCCeeecccCcccccCCC
Q 046127 160 VSQAYKTLWKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLYCVNCE 217 (345)
Q Consensus 160 ~~~~~~~~l~~lgI~~D~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~~c~ 217 (345)
+.+.|.+++++|||.++.++++. ..|.+.+++++++|.++|++|++++.++||+.+-
T Consensus 101 ~~~~f~~d~~~Lni~~~~~~p~a-tehi~~~i~~i~~L~~kG~aY~~~~~vyFdv~~~ 157 (481)
T PRK14534 101 FTEAFFDDCKKLNIVYPDKVLVA-SEYIPIMIEVVKVLEENGFTYFVNGNVYFDTSCF 157 (481)
T ss_pred HHHHHHHHHHHcCCCCCceecCc-cchHHHHHHHHHHHHHCCCEEEECCeEEEecccc
Confidence 99999999999999999888764 6899999999999999999999999999999984
|
|
| >COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.8e-21 Score=199.45 Aligned_cols=186 Identities=17% Similarity=0.187 Sum_probs=152.9
Q ss_pred cchHHHHHH----HHHHHhhchhcchhhccccccccccccc-ccccccccccccccccccccccCCCC-C-CCCCCCCCE
Q 046127 19 LSLQKEFEE----MAARINYSIQNSLWLLNPLHSKATTHFR-NRLKFRQNLFSLSKGAVFCSYATNTD-K-SGTEPADPF 91 (345)
Q Consensus 19 ~~~~k~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~ 91 (345)
..|||.+++ ||++|+-+|....++ +.++..+ |++||.+++.++.......+....++ + +....++++
T Consensus 46 ~~laK~~~~~P~eiA~~i~~~l~~~~~~------~~veiaGpgfINf~l~~~~~~~~~~~~l~~~~~~~G~~~~~~~~kV 119 (577)
T COG0018 46 FQLAKKLGKNPREIAEEIAEKLDTDEII------EKVEIAGPGFINFFLSPEFLAELLLEILEKGDDRYGRSKLGKGKKV 119 (577)
T ss_pred HHHhhhcCCCHHHHHHHHHHhccccCcE------eEEEEcCCCEEEEEECHHHHHHHHHHHHHhcccccCccccCCCCEE
Confidence 357777766 999999999999877 7888888 99999999866666555555544444 2 234567899
Q ss_pred EEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHH------------------------
Q 046127 92 VLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAA------------------------ 147 (345)
Q Consensus 92 ~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~------------------------ 147 (345)
+|...+|||+|||||||+|++++||+++|.++..||+|.....++|.|..|...+.
T Consensus 120 ~iE~sSaNptkplHiGHlR~aiiGDsLaril~~~Gy~V~r~~yvnD~G~Q~~~l~~~~~~~~~e~~~~~~~~~~~lg~~y 199 (577)
T COG0018 120 VIEYSSANPTGPLHIGHLRNAIIGDSLARILEFLGYDVTRENYVNDWGTQIGMLALSYEKRGREALGLTPEPDGYLGEYY 199 (577)
T ss_pred EEEEeCCCCCCCcccchhhhhHHHHHHHHHHHHcCCCeeEEeeECcHHHHHHHHHHHHHHhccccccCCCCcchHHHHHH
Confidence 99999999999999999999999999999999999999999999999977533221
Q ss_pred --------h-CCCC---------------H-----HHHHHHHHHHHHHHHhhcCcccCccccCCChhhHHHHHHHHHHHH
Q 046127 148 --------D-GGSS---------------P-----SEHCDVVSQAYKTLWKDLDIAYDKFIRTTEPKHEAIVKEFYSSVL 198 (345)
Q Consensus 148 --------~-~g~~---------------p-----~~~~~~~~~~~~~~l~~lgI~~D~f~~T~~~~~~~~v~~~~~~L~ 198 (345)
+ .+.+ . +.+++....+|+++|++|||.||.|+.+++..+...+.+++..|.
T Consensus 200 ~~i~~~~~~~~~~~~~~~~~~~~k~e~~d~~~~lw~~~v~~~l~~~k~~l~~l~V~fD~~~~E~e~~~~~~~~~vv~~L~ 279 (577)
T COG0018 200 VKIAKDLEEDPGNDEEEAREEVEKLESGDEEAELWRKFVDLSLEGIKETLDRLGVKFDVYDSEGESFYNGKVEKVVEDLE 279 (577)
T ss_pred HHHHHHHHhCcccchHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHhCcccceeeccchhhhcccHHHHHHHHH
Confidence 0 1100 0 126788899999999999999999998888888889999999999
Q ss_pred hCCCeeecccCc
Q 046127 199 ANGDIYKADYEG 210 (345)
Q Consensus 199 ~kG~iy~~~~~~ 210 (345)
++|++|+.++..
T Consensus 280 ~~~~~~e~~GA~ 291 (577)
T COG0018 280 EKGLLYEDDGAL 291 (577)
T ss_pred hcCCEeeeCCeE
Confidence 999999977765
|
|
| >TIGR00456 argS arginyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.1e-20 Score=195.18 Aligned_cols=189 Identities=15% Similarity=0.153 Sum_probs=147.7
Q ss_pred cchHHHHHH----HHHHHhhchhcchhhcccccccccccccccccccccccccccc-cccccccCCCCCCCCCCCCCEEE
Q 046127 19 LSLQKEFEE----MAARINYSIQNSLWLLNPLHSKATTHFRNRLKFRQNLFSLSKG-AVFCSYATNTDKSGTEPADPFVL 93 (345)
Q Consensus 19 ~~~~k~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~I 93 (345)
..|+|.+++ ||++|+..+.....| +.++..++++||.+++...... ....+.....++.....+++++|
T Consensus 43 ~~lak~~~~~P~~iA~~i~~~l~~~~~i------~~ve~~gpfiN~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~v~v 116 (566)
T TIGR00456 43 FPLAKVLKKNPRAIAEEIVLKLKTGEII------EKVEAAGPFINFFLSPQKLLERLIQKILTQKEDYGSKKLKNKKIII 116 (566)
T ss_pred HHHHHHcCCCHHHHHHHHHHhCCCcCcE------eEEEEeCCEEEEEEcHHHHHHHHHHHHHhcccccCCCCCCCCeEEE
Confidence 347788766 999999999765555 6788888899999998333332 22334445556533333689999
Q ss_pred EccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHh---C---------------------
Q 046127 94 TTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAAD---G--------------------- 149 (345)
Q Consensus 94 ~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~---~--------------------- 149 (345)
+.++|||+|++||||+|+++++|+++|++++.||+|.....++|.|..+...+.. .
T Consensus 117 e~~spn~~~~~hiGh~r~~~~gd~l~r~~~~~g~~v~r~~yinD~G~Q~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~Y~ 196 (566)
T TIGR00456 117 EFSSANPAGPLHIGHLRNAIIGDSLARILEFLGYDVIREYYVNDWGRQFGLLALGVEKFGNEKLNEAVKKPDHGLEGFYV 196 (566)
T ss_pred EecCCCCCCCCchhhhHHHHHHHHHHHHHHHCCCCeeEEeeecchHHHHHHHHHHHHHhCCccccCcccCChHHHHHHHH
Confidence 9999999999999999999999999999999999999999999988765433310 0
Q ss_pred ------------------------CCCH------HHHHHHHHHHHHHHHhhcCcccCccccCCChhhHHHHHHHHHHHHh
Q 046127 150 ------------------------GSSP------SEHCDVVSQAYKTLWKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLA 199 (345)
Q Consensus 150 ------------------------g~~p------~~~~~~~~~~~~~~l~~lgI~~D~f~~T~~~~~~~~v~~~~~~L~~ 199 (345)
.-++ +.+++...+.|+++|++|||.||.|+.+.+..+.+.+..++++|.+
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~le~~d~~~~~~w~~~~~~~l~~~~~~~~~l~V~fD~~~~E~e~~~~~~~~~v~~~L~~ 276 (566)
T TIGR00456 197 EINKRLEENEELEEEARELFVKLESGDEEAIKLWKRLVEYSLEGIKETLARLNIHFDSFVWEGESVKNGMVPKVLEDLKE 276 (566)
T ss_pred HHHHHHhhCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCceeeeeccccccccccHHHHHHHHHH
Confidence 0111 2456777899999999999999999877877788889999999999
Q ss_pred CCCeeecccCccccc
Q 046127 200 NGDIYKADYEGLYCV 214 (345)
Q Consensus 200 kG~iy~~~~~~~yc~ 214 (345)
+|++|++ +..|.+.
T Consensus 277 ~g~~~~~-Ga~~~~~ 290 (566)
T TIGR00456 277 KGLVVED-GALWLDL 290 (566)
T ss_pred CCCEEEc-CCEEEEc
Confidence 9999977 7776553
|
This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori. |
| >PRK12451 arginyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.6e-20 Score=192.03 Aligned_cols=186 Identities=11% Similarity=0.149 Sum_probs=145.0
Q ss_pred cchHHHHHH----HHHHHhhchhcchhhcccccccccccccccccccccccccccccc-cccccCCCCCCCC-CCCCCEE
Q 046127 19 LSLQKEFEE----MAARINYSIQNSLWLLNPLHSKATTHFRNRLKFRQNLFSLSKGAV-FCSYATNTDKSGT-EPADPFV 92 (345)
Q Consensus 19 ~~~~k~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~ 92 (345)
..|+|.+++ ||++|+..++.. .| +.++..++++||.+++..+..... .-+...+.++..+ +++++++
T Consensus 44 ~~lak~~~~~P~~iA~~i~~~l~~~-~i------~~ve~~g~fiN~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~ 116 (562)
T PRK12451 44 FSLAKQYKKAPAIIAKEVAEKLSDP-FF------TKVEAVGPYVNVFFNRETVSDAVLKTILAEKEEYGQNHFGCEKTVV 116 (562)
T ss_pred HHHHHHcCCCHHHHHHHHHHhcccc-cc------ceeEeeCCEEEEEECHHHHHHHHHHHHHhhHhhcCCCccCCCCEEE
Confidence 568888854 999999999654 35 668888899999999865543322 2234445565333 4468999
Q ss_pred EEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHH---hCCC------------------
Q 046127 93 LTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAA---DGGS------------------ 151 (345)
Q Consensus 93 I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~---~~g~------------------ 151 (345)
|.+.+|||+|||||||+|++++||+++|.++..||+|.....++|.|..+...+. +.|.
T Consensus 117 vE~sSpNp~kplHvGH~R~aiiGd~l~ril~~~G~~V~r~nyinD~G~Q~~~l~~~~~~~~~~~~~~~~~~~~l~~~Y~~ 196 (562)
T PRK12451 117 IDYSSPNIAKPFSMGHLRSTMIGNALKHIAEKCGYEVVGINYIGDWGTQFGKLITAYKKWGNEAVVKEDPIRELFKLYVQ 196 (562)
T ss_pred EEecCCCCCCCcccchhhhHHHHHHHHHHHHHCCCCeEEEeeecCchHHHHHHHHHHHHhCCccccccCchHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999987544331 0010
Q ss_pred -------------------------C------HHHHHHHHHHHHHHHHhhcCcccCccccCCChhhHHHHHHHHHHHHhC
Q 046127 152 -------------------------S------PSEHCDVVSQAYKTLWKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLAN 200 (345)
Q Consensus 152 -------------------------~------p~~~~~~~~~~~~~~l~~lgI~~D~f~~T~~~~~~~~v~~~~~~L~~k 200 (345)
+ .+.+++...+.|+++|++|||.||.|. .++.|.+.+.+++++|.++
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~l~~~~~~~~~l~V~fD~~~--~es~~~~~~~~v~~~L~~~ 274 (562)
T PRK12451 197 FHEEVKDDEELEEEGRAWFKKLEEGDEEAVELWNWFRHESLKEFSRIYELLGVEFTNFQ--GEAFYNDLMEDFIGILEEH 274 (562)
T ss_pred HHHhhccChhHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCceeec--chHhhhhhHHHHHHHHHHC
Confidence 1 124467778899999999999999553 3446778889999999999
Q ss_pred CCeeecccCcccc
Q 046127 201 GDIYKADYEGLYC 213 (345)
Q Consensus 201 G~iy~~~~~~~yc 213 (345)
|++|+.++..|.+
T Consensus 275 g~~~e~dGa~~~~ 287 (562)
T PRK12451 275 DLLEESEGALVVN 287 (562)
T ss_pred CCEEecCCeEEEE
Confidence 9999998887754
|
|
| >PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.4e-20 Score=172.31 Aligned_cols=126 Identities=22% Similarity=0.336 Sum_probs=107.0
Q ss_pred CCCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 046127 87 PADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKT 166 (345)
Q Consensus 87 ~~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~ 166 (345)
+.-++++|.| +|...+||||+|++|..|++.|+++..|++|.++.+++|.+++|..+|++.|+++.++++++.++|.+
T Consensus 7 ~~v~~Y~CGP--TVYd~~HiGhaR~~v~~D~l~R~L~~~g~~V~~V~NiTDiDDKii~~A~~~g~~~~ela~~y~~~f~~ 84 (300)
T PF01406_consen 7 GKVRMYVCGP--TVYDYAHIGHARTYVFFDVLRRYLEYLGYDVTYVMNITDIDDKIIKRAREEGVSPQELARRYEEEFFE 84 (300)
T ss_dssp TEEEEEEEEE--BTTS--BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEB-SSHHHHHHHHHTTS-HHHHHHHHHHHHHH
T ss_pred CeEEEEcCCC--CCCCCCCCcceeeeeeHHHHHHHHHHcCCeEEEEEeccccchHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 3445555554 56699999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCccc-CccccCCChhhHHHHHHHHHHHHhCCCeeecc-cCcccccCC
Q 046127 167 LWKDLDIAY-DKFIRTTEPKHEAIVKEFYSSVLANGDIYKAD-YEGLYCVNC 216 (345)
Q Consensus 167 ~l~~lgI~~-D~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~-~~~~yc~~c 216 (345)
+|++|||.. |.+.+.+ .|.+.+.+++++|+++|++|..+ +.++|+++-
T Consensus 85 dm~~Lnv~~p~~~prat--e~i~~ii~~i~~Li~~G~AY~~~~g~VYFdv~~ 134 (300)
T PF01406_consen 85 DMKALNVLPPDHYPRAT--EHIPEIIELIEKLIDKGHAYESEDGSVYFDVSK 134 (300)
T ss_dssp HHHHTT----SEEEEGG--GGHHHHHHHHHHHHHTTSEEEETTSEEEE-CCG
T ss_pred HHHHcCCCCCccccchh--ccHHHHHHHHHHHHHCCCeEEcCCCcEEEeecc
Confidence 999999986 6887777 69999999999999999999999 999998763
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B. |
| >PLN02286 arginine-tRNA ligase | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.7e-19 Score=186.29 Aligned_cols=186 Identities=14% Similarity=0.171 Sum_probs=142.2
Q ss_pred cchHHHHH------H----HHHHHhhchhcchhhccccccccccccc-ccccccccccccccccccccccCCCCCCCCCC
Q 046127 19 LSLQKEFE------E----MAARINYSIQNSLWLLNPLHSKATTHFR-NRLKFRQNLFSLSKGAVFCSYATNTDKSGTEP 87 (345)
Q Consensus 19 ~~~~k~~~------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (345)
.+|||.++ + ||++|+..+++...| +.++..+ |+|||++++.++......-......+.....+
T Consensus 42 ~~lak~~~~~~~~~k~P~~iA~~i~~~l~~~~~i------~~v~vagpGfiNf~l~~~~l~~~l~~~~~~~~~~g~~~~~ 115 (576)
T PLN02286 42 MGLWSKLKGKGTSFKNPRAVAQAIVKNLPASEMI------ESTSVAGPGFVNVRLSASWLAKRIERMLVDGIDTWAPTLP 115 (576)
T ss_pred HHHHHHhCccccccCCHHHHHHHHHHhCccccce------eeEEEcCCCeEEEEECHHHHHHHHHHHHHcCcccCCCCCC
Confidence 45788887 5 999999999876555 6677776 59999999876555433333333333222334
Q ss_pred CCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHh----CCC------------
Q 046127 88 ADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAAD----GGS------------ 151 (345)
Q Consensus 88 ~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~----~g~------------ 151 (345)
+++++|.+.+|||+|||||||+|++++||+|+|.++..||+|.....++|.|..+...+.. .+.
T Consensus 116 ~~~v~VEfsSpNp~kplHvGHlRsaiiGdsLaril~~~G~~V~r~nyinD~G~Qi~~l~~~~~~~~~~~~~~~~~~i~~l 195 (576)
T PLN02286 116 VKRAVVDFSSPNIAKEMHVGHLRSTIIGDTLARMLEFSGVEVLRRNHVGDWGTQFGMLIEHLFEKFPNWESVSDQAIGDL 195 (576)
T ss_pred CceEEEEecCCCCCCCCccccccchhhHHHHHHHHHHcCCceEEEEeecchHHHHHHHHHHHHHhcCcccccCcccHHHH
Confidence 5899999999999999999999999999999999999999999999999999876443321 000
Q ss_pred -------------CH------------------------HHHHHHHHHHHHHHHhhcCcccCccccCCChhhHHHHHHHH
Q 046127 152 -------------SP------------------------SEHCDVVSQAYKTLWKDLDIAYDKFIRTTEPKHEAIVKEFY 194 (345)
Q Consensus 152 -------------~p------------------------~~~~~~~~~~~~~~l~~lgI~~D~f~~T~~~~~~~~v~~~~ 194 (345)
++ +.+++.....|++++++|||.||.. .++.|.+.+.+++
T Consensus 196 ~~~Y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~lw~~~~~~~~~~~~~~y~~l~V~fd~~---ges~y~~~~~~vi 272 (576)
T PLN02286 196 QEFYKAAKKRFDEDEEFKARAQQAVVRLQGGDPEYRAAWAKICEISRREFEKVYQRLRVELEEK---GESFYNPYIPGVI 272 (576)
T ss_pred HHHHHHhhhhccCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhCCeeeec---CchhhhhhHHHHH
Confidence 00 1345666788999999999999973 3446777789999
Q ss_pred HHHHhCCCeeecccCcccc
Q 046127 195 SSVLANGDIYKADYEGLYC 213 (345)
Q Consensus 195 ~~L~~kG~iy~~~~~~~yc 213 (345)
..|.++|++|+.++..|.+
T Consensus 273 ~~L~~~g~~~e~dGa~~v~ 291 (576)
T PLN02286 273 EELESKGLVVESDGARVIF 291 (576)
T ss_pred HHHHHCCCEEeeCCceEee
Confidence 9999999999998887753
|
|
| >cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.1e-19 Score=174.72 Aligned_cols=129 Identities=19% Similarity=0.263 Sum_probs=110.8
Q ss_pred CCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCc------------------ChHHHHHHHhC
Q 046127 88 ADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEH------------------GEKIAAAAADG 149 (345)
Q Consensus 88 ~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~------------------G~~I~~~A~~~ 149 (345)
+++++|+++++ |||.+||||++.++.+|+++|++|++|++|.+++|+|+| |.|+...++..
T Consensus 18 ~~~~~v~tgi~-psG~~HIG~~~e~i~~D~i~R~lr~~G~~v~~v~~~Dd~d~lrKvp~~l~~~~~~~~G~pi~~ip~p~ 96 (353)
T cd00674 18 KEKYVVASGIS-PSGHIHIGNFREVITADLVARALRDLGFEVRLIYSWDDYDRLRKVPPNVPESYEQYIGMPLSSVPDPF 96 (353)
T ss_pred CCeEEEecCCC-CCCCcccCccHHHHHHHHHHHHHHHcCCCEEEEEEEcCCCcccccccchhhHHHHhcCccchhchhhc
Confidence 35789998884 999999999999999999999999999999999999999 78888888888
Q ss_pred CCCHHHHHHHHHHHHHHHHhhcCcccCccccCCChhhHHHHHHHHHHHHhCCCeee------c--ccC-----cccccCC
Q 046127 150 GSSPSEHCDVVSQAYKTLWKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYK------A--DYE-----GLYCVNC 216 (345)
Q Consensus 150 g~~p~~~~~~~~~~~~~~l~~lgI~~D~f~~T~~~~~~~~v~~~~~~L~~kG~iy~------~--~~~-----~~yc~~c 216 (345)
|..+ ++++++.+.+++.|+.|||++|.+.+|....+....+.++..|.+++.|.+ + ... ..+|++|
T Consensus 97 g~~~-~~~d~~~~~f~~~l~~lgi~~d~~~~T~~y~~g~~~~~i~~~L~~~~~I~~i~~~~~~~~~~~~~~P~~p~c~~c 175 (353)
T cd00674 97 GCCE-SYAEHFERPFEESLEKLGIEVEFISQSQMYKSGLYDENILIALEKRDEIMAILNEYRGRELQETWYPFMPYCEKC 175 (353)
T ss_pred CCCH-HHHHHHHHHHHHHHHHcCCeeeeeecCCchhhchHHHHHHHHHHHCChHHHHHHHhcCCccCCCceeeeeecCCc
Confidence 8888 999999999999999999999966555555556788889999999988753 1 122 3459999
Q ss_pred CC
Q 046127 217 EE 218 (345)
Q Consensus 217 ~~ 218 (345)
+.
T Consensus 176 g~ 177 (353)
T cd00674 176 GK 177 (353)
T ss_pred Cc
Confidence 93
|
Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity. |
| >COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.3e-19 Score=175.39 Aligned_cols=136 Identities=24% Similarity=0.256 Sum_probs=120.2
Q ss_pred CCCCCCCCCCCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHH
Q 046127 79 NTDKSGTEPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCD 158 (345)
Q Consensus 79 ~~~~~~~~~~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~ 158 (345)
..|.+..++.-++|||.| ||....||||+|++|..|++.||++.+||.|.||.+++|.+++|..+|.+.|.+..++++
T Consensus 13 e~F~P~~~~~V~mYvCGp--TVYd~~HIGhaRt~V~fDvl~R~L~~~Gy~V~yV~NiTDIDDKIi~rA~~~g~~~~ev~~ 90 (464)
T COG0215 13 EEFVPIDPGKVKMYVCGP--TVYDYAHIGHARTYVVFDVLRRYLRYLGYKVTYVRNITDIDDKIINRAREEGLSIREVAE 90 (464)
T ss_pred ecccCCCCCeEEEEecCC--ccCCccccccCcceehHHHHHHHHHHhCCeEEEEeccccccHHHHHHHHHhCCCHHHHHH
Confidence 344333334456666655 566999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCcc-cCccccCCChhhHHHHHHHHHHHHhCCCeeec-ccCcccccCCCC
Q 046127 159 VVSQAYKTLWKDLDIA-YDKFIRTTEPKHEAIVKEFYSSVLANGDIYKA-DYEGLYCVNCEE 218 (345)
Q Consensus 159 ~~~~~~~~~l~~lgI~-~D~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~-~~~~~yc~~c~~ 218 (345)
++.++|.+++++|||. .|..++.| .|...+.+++++|.++|++|.. ++.++|++++-.
T Consensus 91 ~~i~~f~~D~~aL~v~~p~~~PraT--e~I~~iI~~I~~LiekG~AY~~~~G~VYFdv~~f~ 150 (464)
T COG0215 91 RYIAAFFEDMDALNVLPPDIEPRAT--EHIDEIIEFIEKLIEKGYAYVADDGDVYFDVSKFK 150 (464)
T ss_pred HHHHHHHHHHHHhCCCCCcccCcHh--hCHHHHHHHHHHHHHCCceEEecCCcEEEecccch
Confidence 9999999999999995 68888887 6999999999999999999998 678999887654
|
|
| >PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=99.71 E-value=3e-17 Score=160.64 Aligned_cols=136 Identities=20% Similarity=0.175 Sum_probs=103.7
Q ss_pred CCCCCCCCCCCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHh----------
Q 046127 79 NTDKSGTEPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAAD---------- 148 (345)
Q Consensus 79 ~~~~~~~~~~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~---------- 148 (345)
+.+....+.+++++|..++|||+|||||||+|++++||+++|.++..||+|.....++|.|..+...+..
T Consensus 10 ~~y~~~~~~~~kv~VE~sSpNp~kplHvGHlR~~iiGd~laril~~~G~~V~r~nyigD~G~Q~~~l~~~~~~~~~~~~~ 89 (354)
T PF00750_consen 10 EEYGSEKGKGKKVVVEFSSPNPTKPLHVGHLRNTIIGDSLARILEAAGYDVTRENYIGDWGTQIGLLAASYKKFGDEELL 89 (354)
T ss_dssp GGTT--TTTSEEEEEEE---BTTSS-BHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEBTTSHHHHHHHHHHHHHHHHHTS
T ss_pred hhcccccCCCCEEEEEecCCCCCCCCcCCcchhhhhhHHHHHHHHHcCCeeeeEEEECCCCHHHHHHHHHHHhhhhhhhc
Confidence 3443445678999999999999999999999999999999999999999999999999999876443320
Q ss_pred ---------------------C------CC------------------CHHHHHHH-HHHHHHHHHhhcCcccCccccCC
Q 046127 149 ---------------------G------GS------------------SPSEHCDV-VSQAYKTLWKDLDIAYDKFIRTT 182 (345)
Q Consensus 149 ---------------------~------g~------------------~p~~~~~~-~~~~~~~~l~~lgI~~D~f~~T~ 182 (345)
. .. ...++... +.+.++++|+++++.+|.++.+.
T Consensus 90 ~~~~~~~l~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~~~~~~~~~~k~~l~~l~i~fDv~~~E~ 169 (354)
T PF00750_consen 90 EEDPIKHLEDLYVGANKRDEADEIAEKEPEELEEEAREYLKKLEQGDEEFRELWQKYILEWSKETLQRLYIRFDVWFDES 169 (354)
T ss_dssp HSSCHHHHHHHHHHHHHHHHHTTCSSGCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHTT---SEEEEHC
T ss_pred ccccccchhhhhhhhhhhhhhhhhccccccccccccceeeeecccccHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcccc
Confidence 0 00 11134444 77889999999999999888777
Q ss_pred ChhhHHHHHHHHHHHHhCCCeeecccCccccc
Q 046127 183 EPKHEAIVKEFYSSVLANGDIYKADYEGLYCV 214 (345)
Q Consensus 183 ~~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~ 214 (345)
+..+.+.+.+++++|.++|++|+.++..|...
T Consensus 170 Es~~~~~v~~vl~~L~e~g~~~~~dGa~~i~~ 201 (354)
T PF00750_consen 170 ESFYSGKVDEVLERLKEKGLLYESDGALWIDL 201 (354)
T ss_dssp HHHHTTHHHHHHHHHHCTTTEEEETTEEEEEG
T ss_pred hhhhhhHHHHHHHHHHhCCcEEecCCcEEEec
Confidence 77788899999999999999999887776643
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B. |
| >cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.6e-16 Score=134.61 Aligned_cols=77 Identities=25% Similarity=0.186 Sum_probs=74.8
Q ss_pred EEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Q 046127 93 LTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWK 169 (345)
Q Consensus 93 I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~ 169 (345)
|++++|||||++||||+|+++++|+++|++|++|++|.+++|+||+|.+|...|.+.+.+++++++.+.+.|+++++
T Consensus 1 ~~~~~p~~~~~~HlGh~~~~~~~d~~~r~lr~~G~~v~~~~~~dd~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 77 (143)
T cd00802 1 TTFSGITPNGYLHIGHLRTIVTFDFLAQAYRKLGYKVRCIALIDDAGGLIGDPANKKGENAKAFVERWIERIKEDVE 77 (143)
T ss_pred CEecCCCCCCCccHhHHHHHHHHHHHHHHHHHcCCCeEEEeeeCCCchHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999888
|
Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. |
| >PRK00750 lysK lysyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.1e-16 Score=163.13 Aligned_cols=132 Identities=17% Similarity=0.193 Sum_probs=100.2
Q ss_pred CCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcC--------hHH-HHHHHhCCCC-------
Q 046127 89 DPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHG--------EKI-AAAAADGGSS------- 152 (345)
Q Consensus 89 ~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G--------~~I-~~~A~~~g~~------- 152 (345)
+.++|++++ +|||.+||||++.++.+|+++|++|++|++|.+++|+|+|| .|. +..++..|.+
T Consensus 23 ~~~~~~~g~-~psG~~HiG~~~e~~~~d~v~r~lr~~G~~v~~i~~~Dd~d~lRkvp~~~p~~~~~~~~~G~pl~~~p~p 101 (510)
T PRK00750 23 PPVVVETGI-GPSGLPHIGNFREVARTDMVRRALRDLGIKTRLIFFSDDMDGLRKVPDNVPNQEMLEEYLGKPLTEIPDP 101 (510)
T ss_pred CcEEEEeCC-CCCCCcccccccchhhHHHHHHHHHHcCCcEEEEEEEecCCcccccCCCCCchHHHHHhcCcccccCCCC
Confidence 348888877 69999999999999999999999999999999999999997 333 2344444544
Q ss_pred ---HHHHHHHHHHHHHHHHhhcCcccCccccCCChhhHHHHHHHHHHHHhCCCeee------c--ccC-----cccccCC
Q 046127 153 ---PSEHCDVVSQAYKTLWKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYK------A--DYE-----GLYCVNC 216 (345)
Q Consensus 153 ---p~~~~~~~~~~~~~~l~~lgI~~D~f~~T~~~~~~~~v~~~~~~L~~kG~iy~------~--~~~-----~~yc~~c 216 (345)
++.+++++.+.+++.|+.+||++|.+..|.........+.+...|.+++.|.+ + ... ..+|++|
T Consensus 102 ~G~~~~~~~~~~~~~~~~~~~~gi~~d~~~~t~~y~~g~~~~~i~~~l~~~~~i~~il~~~~~~~~~~~~~P~~pic~~c 181 (510)
T PRK00750 102 FGCHESYAEHFNAPLREFLDRFGIEYEFISATECYKSGRYDEAILTALENRDEIMEILLPYLGEERQATYSPFLPICPKC 181 (510)
T ss_pred CCCchHHHHHHHHHHHHHHHHcCCceEEEehhhhhccCchHHHHHHHHHhHHHHHHHHHHhcCCccCCCeeeeeeeCCCC
Confidence 79999999999999999999999955544332333455555566666665542 1 122 3459999
Q ss_pred CCccc
Q 046127 217 EEYKD 221 (345)
Q Consensus 217 ~~~l~ 221 (345)
|..++
T Consensus 182 g~~~~ 186 (510)
T PRK00750 182 GKVLT 186 (510)
T ss_pred Cccce
Confidence 98875
|
|
| >KOG0437 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.1e-15 Score=155.59 Aligned_cols=141 Identities=21% Similarity=0.298 Sum_probs=119.7
Q ss_pred CCCCCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCC--------------
Q 046127 85 TEPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGG-------------- 150 (345)
Q Consensus 85 ~~~~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g-------------- 150 (345)
..+.++|+++.|.||.||.||+||+.+..-.|+.+-|.|++|++|+|.+|+.|.|+||...|.+..
T Consensus 40 ~~~~~Kff~tfpyPYMNG~LHlGH~FslSK~eFa~~y~rL~Gk~vLfPfgFHCTGMPI~A~AdKLkrEie~fG~ppdf~~ 119 (1080)
T KOG0437|consen 40 QKSKPKFFVTFPYPYMNGRLHLGHAFSLSKVEFASGYERLQGKNVLFPFGFHCTGMPIKASADKLKREIELFGCPPDFPE 119 (1080)
T ss_pred ccccCceeEeccccccCceeeccceeehhhhHHHHHHHHhcCceEEeecccccCCCccHHhHHHHHHHHHHhCCCCCCch
Confidence 456799999999999999999999999999999999999999999999999999999988886421
Q ss_pred ----------------------------------------------C---------CHHHHHHHHHHHHHHHHhhcCccc
Q 046127 151 ----------------------------------------------S---------SPSEHCDVVSQAYKTLWKDLDIAY 175 (345)
Q Consensus 151 ----------------------------------------------~---------~p~~~~~~~~~~~~~~l~~lgI~~ 175 (345)
+ +|..|...+-..-.+++++||...
T Consensus 120 e~eeEv~eev~~~~~~~~~k~kgKKsk~aaK~g~~kYQw~IM~slGl~deEI~~F~d~~~WL~yFPpLc~~dlk~~gl~i 199 (1080)
T KOG0437|consen 120 EEEEEVEEEVKTEDAIEDVKFKGKKSKAAAKTGGQKYQWEIMESLGLPDEEIKKFADPKHWLYYFPPLCERDLKRFGLGI 199 (1080)
T ss_pred hhhhhhhhcccccccccccccccchhhHHHhhcccchhHHHHHHcCCCHHHhhcccChhHHHHhCChHHHHHHHHhCCCc
Confidence 0 111223333344567899999888
Q ss_pred C---ccccCC-ChhhHHHHHHHHHHHHhCCCeeecccCcccccCCCCccchhhh
Q 046127 176 D---KFIRTT-EPKHEAIVKEFYSSVLANGDIYKADYEGLYCVNCEEYKDEKEL 225 (345)
Q Consensus 176 D---~f~~T~-~~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~~c~~~l~d~el 225 (345)
| .|+.|. ++.|-..|+|.|.+|.+.|.|..+.+...|||.+++.+.|+|.
T Consensus 200 DWRRSFITTDvNpYyDsFVRWQ~n~L~~~gkI~fgkRyTIyspkDgQpCmDHDR 253 (1080)
T KOG0437|consen 200 DWRRSFITTDVNPYYDSFVRWQFNKLKEAGKIKFGKRYTIYSPKDGQPCMDHDR 253 (1080)
T ss_pred ceeeeeeecccchhHHHHHHHHHHHHHhcCCcccCcceeeecCCCCCccccccc
Confidence 8 577564 6888899999999999999999999999999999999999874
|
|
| >KOG2007 consensus Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.6e-14 Score=140.74 Aligned_cols=128 Identities=19% Similarity=0.250 Sum_probs=106.8
Q ss_pred CCCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHH-HcCCeEEEEcCCCCcChHHHHHHH--hCCCCHHHHHH---HH
Q 046127 87 PADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQR-LLGKKVIFITGTDEHGEKIAAAAA--DGGSSPSEHCD---VV 160 (345)
Q Consensus 87 ~~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr-~~G~~V~~v~G~D~~G~~I~~~A~--~~g~~p~~~~~---~~ 160 (345)
++-++|+| .|++...-||||||+||..|++.|+++ ..||+|.|+.++.|.+++|..+|+ +.+..|..+.+ .+
T Consensus 54 ~~v~wY~C--GpTvYD~SHmGHArsYVsfDIlrRiL~dyfgy~V~~vmNiTDVDDKII~RAr~~~m~e~~~~l~~~F~~~ 131 (586)
T KOG2007|consen 54 NKVTWYIC--GPTVYDSSHMGHARSYVSFDILRRILRDYFGYDVTFVMNITDVDDKIIKRARKEEMGEKPLSLSERFCYY 131 (586)
T ss_pred CeEEEEEe--cCcccchhhhhhhhhhhhHHHHHHHHHHHcCcceEEEecccchhHHHHHHhhhhhhccchhhHHHHHHHH
Confidence 33455555 457779999999999999999999999 999999999999999999999997 24444544433 56
Q ss_pred HHHHHHHHhhcCccc-CccccCCChhhHHHHHHHHHHHHhCCCeeecccCcccccCCCC
Q 046127 161 SQAYKTLWKDLDIAY-DKFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLYCVNCEE 218 (345)
Q Consensus 161 ~~~~~~~l~~lgI~~-D~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~~c~~ 218 (345)
.++|.++|.+|++.. |...|.+ +|...+..++++++++|+.|..++.+||++.--.
T Consensus 132 e~eF~~DM~~LnvLpPtv~tRVS--eyvp~II~fIqkIIdnG~aY~~dGsVYFdv~kf~ 188 (586)
T KOG2007|consen 132 EEEFLQDMAALNVLPPTVQTRVS--EYVPQIIKFIQKIIDNGYAYAVDGSVYFDVDKFP 188 (586)
T ss_pred HHHHHHHHHHhCCCCCcccchhh--hchHHHHHHHHHHHhCCceeeeCCcEEEeccccc
Confidence 799999999999975 5655544 7999999999999999999999999999876544
|
|
| >TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.2e-14 Score=143.21 Aligned_cols=88 Identities=20% Similarity=0.229 Sum_probs=82.5
Q ss_pred CCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCc------------------ChHHHHHHHhCC
Q 046127 89 DPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEH------------------GEKIAAAAADGG 150 (345)
Q Consensus 89 ~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~------------------G~~I~~~A~~~g 150 (345)
++++|+++.+ |||.+||||++..+.+|+++|++|++|++|.+++++|+| |.|+...+...|
T Consensus 18 ~~~~~~tg~~-psG~~HiG~~~e~~~~d~v~r~~r~~g~~~~~i~~~Dd~D~lRKvp~~~p~~~~~ylG~Pl~~vpdp~g 96 (515)
T TIGR00467 18 NLYTVASGIT-PSGHIHIGNFREVITADAIARALRDSGSEARFIYIADNYDPLRKVYPFLPEELETYLGMPLTRIPDPEG 96 (515)
T ss_pred CeEEEecCCC-CCCCccccchhhhhHHHHHHHHHHHcCCCEEEEEEEcCCcccccccccccHHHHHhCCCcceecCCCCC
Confidence 4799999987 999999999999999999999999999999999999999 999988888888
Q ss_pred CCHHHHHHHHHHHHHHHHhhcCcccCcc
Q 046127 151 SSPSEHCDVVSQAYKTLWKDLDIAYDKF 178 (345)
Q Consensus 151 ~~p~~~~~~~~~~~~~~l~~lgI~~D~f 178 (345)
.. +.+++++...+.+.|+.|||+++..
T Consensus 97 ~~-~s~~~h~~~~~~~~l~~~gi~~e~~ 123 (515)
T TIGR00467 97 CK-TSYAEHFLIPFLESLPVLGINPEFI 123 (515)
T ss_pred Cc-HHHHHHHHHHHHHHHHHcCCeEEEE
Confidence 86 8999999999999999999998743
|
This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set. |
| >cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=99.17 E-value=6.7e-11 Score=109.36 Aligned_cols=96 Identities=17% Similarity=0.175 Sum_probs=78.1
Q ss_pred EEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhc
Q 046127 92 VLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKDL 171 (345)
Q Consensus 92 ~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~~l 171 (345)
+++...|+|||+|||||++++++.+.++| ++++.++..+||.+.+.. .......+.|.++|++|
T Consensus 2 v~~RfaPsPtG~lHiG~~rtal~~~l~Ar-----~~~G~~ilRieDtD~~r~-----------~~~~~~~~~i~~dL~wL 65 (240)
T cd09287 2 VVMRFAPNPNGPLHLGHARAAILNGEYAK-----MYGGKFILRFDDTDPRTK-----------RPDPEAYDMIPEDLEWL 65 (240)
T ss_pred ceEeCCCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEeeCcCCCCcc-----------cchHHHHHHHHHHHHHc
Confidence 35677899999999999999999999999 578888888888875542 12333455699999999
Q ss_pred CcccCccccCCChhhHHHHHHHHHHHHhCCCeee
Q 046127 172 DIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYK 205 (345)
Q Consensus 172 gI~~D~f~~T~~~~~~~~v~~~~~~L~~kG~iy~ 205 (345)
|+.+|..++.+ .+.+...+..++|.++|.+|.
T Consensus 66 Gl~~d~~~~qS--~r~~~y~~~~~~Li~~G~aY~ 97 (240)
T cd09287 66 GVKWDEVVIAS--DRIELYYEYARKLIEMGGAYV 97 (240)
T ss_pred CCCCCCccchh--ccHHHHHHHHHHHHHcCCccc
Confidence 99999654444 578888889999999999996
|
Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. |
| >PRK04156 gltX glutamyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=7e-10 Score=113.85 Aligned_cols=97 Identities=18% Similarity=0.161 Sum_probs=78.8
Q ss_pred EEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHhh
Q 046127 91 FVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKD 170 (345)
Q Consensus 91 ~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~~ 170 (345)
-+++.-+|+|||+|||||+|++++.+.+|| +|...++.-+||.+.+|.. ....+.+.|.++|++
T Consensus 101 ~V~tRFaPsPtG~LHIGharaalln~~~Ar-----~~~G~~iLRidDTDpk~~R-----------~~~e~~~~I~edL~w 164 (567)
T PRK04156 101 KVVMRFAPNPSGPLHLGHARAAILNDEYAK-----MYGGKFILRFEDTDPRTKR-----------PDPEAYDMILEDLKW 164 (567)
T ss_pred eEEEEeCCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEeEccCCCCccc-----------chHHHHHHHHHHHHH
Confidence 367778999999999999999999999999 3666777777777654411 233456899999999
Q ss_pred cCcccCccccCCChhhHHHHHHHHHHHHhCCCeee
Q 046127 171 LDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYK 205 (345)
Q Consensus 171 lgI~~D~f~~T~~~~~~~~v~~~~~~L~~kG~iy~ 205 (345)
||+.+|..++.+ .+.+...+...+|.++|.+|.
T Consensus 165 LGl~wD~~~~qS--dr~~~y~~~a~~Li~~G~AY~ 197 (567)
T PRK04156 165 LGVKWDEVVIQS--DRLEIYYEYARKLIEMGGAYV 197 (567)
T ss_pred cCCCCCCccCcc--cCHHHHHHHHHHHHHcCCCcc
Confidence 999999765555 578888899999999999995
|
|
| >KOG4426 consensus Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.2e-09 Score=104.72 Aligned_cols=188 Identities=16% Similarity=0.174 Sum_probs=136.6
Q ss_pred HHHHHHHHHHHhhchhcchhhccccccccc-ccccccccccccccccccccccccccCCCCCCCCCCCCCEEEEccCCCC
Q 046127 22 QKEFEEMAARINYSIQNSLWLLNPLHSKAT-THFRNRLKFRQNLFSLSKGAVFCSYATNTDKSGTEPADPFVLTTPLYYV 100 (345)
Q Consensus 22 ~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~Pyp 100 (345)
+|+=+.||++|.-++-+++++ ++. -+=+|.+|-.++.....+....-+.++-. .+.-..++++|...+||.
T Consensus 128 ~~~P~~va~~l~~~lP~se~v------Ek~~iagpGFiNv~Ls~d~~~~~i~nll~~GV~--~P~l~~KrvlVDFSSPNI 199 (656)
T KOG4426|consen 128 NKRPRDVAQELQKHLPTSEMV------EKCEIAGPGFINVFLSKDYMSKQISNLLVNGVK--LPTLSVKRVLVDFSSPNI 199 (656)
T ss_pred ccCcHHHHHHHHhhCCchhhh------hhhcccCCceEEEEechHHHHHHHHHHHHcCCC--CcccceeeEEEecCCCcH
Confidence 333445999999999888877 322 23445555544443333333333333322 233456999999999999
Q ss_pred CCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChH----HHHHHHh----------------------------
Q 046127 101 NAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEK----IAAAAAD---------------------------- 148 (345)
Q Consensus 101 nG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~----I~~~A~~---------------------------- 148 (345)
-..+|+||.|..|++|.++|.+...|++|+.+..+-|.|+. |+..-++
T Consensus 200 AKeMHVGHLRSTIIGdsl~RllE~~~~dVlR~NHvGDWGTQFGMLIahL~dkFPd~l~vsp~IgDLQvFYkeSKkrFD~d 279 (656)
T KOG4426|consen 200 AKEMHVGHLRSTIIGDSLCRLLEFSGVDVLRRNHVGDWGTQFGMLIAHLFDKFPDYLSVSPPIGDLQVFYKESKKRFDED 279 (656)
T ss_pred HHHhhhhhhhhhhHhHHHHHHHHhcCcceEeeccccchHHHHHHHHHHHHHhCCchhccCCCchhHHHHHHHHHhccCcC
Confidence 99999999999999999999999999999999988887765 3322221
Q ss_pred --------------CCCCH------HHHHHHHHHHHHHHHhhcCcccCccccCCChhhHHHHHHHHHHHHhCCCeeeccc
Q 046127 149 --------------GGSSP------SEHCDVVSQAYKTLWKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADY 208 (345)
Q Consensus 149 --------------~g~~p------~~~~~~~~~~~~~~l~~lgI~~D~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~ 208 (345)
+|-+| ..+|+-..+++...+++|.|+...- .++.|...+.++++.|..+|++.+.++
T Consensus 280 eeFKkrAyq~VV~LQggdp~~~kAW~~ICdvSr~ef~kvY~rLdi~l~e~---GESFYq~~m~~vveel~~kglvee~~G 356 (656)
T KOG4426|consen 280 EEFKKRAYQAVVRLQGGDPDIRKAWALICDVSRKEFQKVYNRLDISLKER---GESFYQDRMAEVVEELKSKGLVEEDDG 356 (656)
T ss_pred HHHHHHHHHHeeecccCCChHHHHHHHHHHhhHHHHHHHHHHhcchHhhc---chhhhhhHHHHHHHHHhcCCceeecCC
Confidence 11122 2578888999999999999997532 355788999999999999999998886
Q ss_pred -CcccccCCCCcc
Q 046127 209 -EGLYCVNCEEYK 220 (345)
Q Consensus 209 -~~~yc~~c~~~l 220 (345)
.+.|-+.|+-.|
T Consensus 357 r~i~f~~g~~IPL 369 (656)
T KOG4426|consen 357 RRIMFPEGCDIPL 369 (656)
T ss_pred ceEeccCCCCcce
Confidence 477777787655
|
|
| >TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family | Back alignment and domain information |
|---|
Probab=98.93 E-value=3.1e-09 Score=109.02 Aligned_cols=96 Identities=15% Similarity=0.118 Sum_probs=78.1
Q ss_pred CEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Q 046127 90 PFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWK 169 (345)
Q Consensus 90 ~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~ 169 (345)
.-+++.-+|.|||+|||||++++++.+.+|| . |+..++.-+||.+.. .-..++.+.|.++|+
T Consensus 92 ~~vvtRFaPsPtG~LHiGharaalln~~~Ar--~---~~G~~iLRidDTDp~-------------R~~~e~~~~I~edL~ 153 (560)
T TIGR00463 92 GEVVMRFAPNPSGPLHIGHARAAILNQYFAK--K---YKGKLIIRFDDTDPR-------------RVKPEAYDMILEDLD 153 (560)
T ss_pred CeeEEEeCCCCCCCccHHHHHHHHHHHHHHH--h---cCCEEEEEeCcCCcc-------------cccHHHHHHHHHHHH
Confidence 4488999999999999999999999999997 2 445566666666532 123347889999999
Q ss_pred hcCcccCccccCCChhhHHHHHHHHHHHHhCCCeee
Q 046127 170 DLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYK 205 (345)
Q Consensus 170 ~lgI~~D~f~~T~~~~~~~~v~~~~~~L~~kG~iy~ 205 (345)
.||+.+|..++++ .|.+...+...+|.++|.+|.
T Consensus 154 wLGi~~d~~~~qS--d~~~~y~~~a~~Li~~G~AY~ 187 (560)
T TIGR00463 154 WLGVKGDEVVYQS--DRIEEYYDYCRKLIEMGKAYV 187 (560)
T ss_pred HcCCCCCcccccc--ccHHHHHHHHHHHHHcCCcee
Confidence 9999999776555 578889999999999999995
|
The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). |
| >PRK12558 glutamyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=6.4e-09 Score=104.25 Aligned_cols=94 Identities=24% Similarity=0.212 Sum_probs=74.2
Q ss_pred EEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhc
Q 046127 92 VLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKDL 171 (345)
Q Consensus 92 ~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~~l 171 (345)
+++.-.|.|||+|||||+|+++....+|| ...|. |+.-++|.+ ++...+.+.+.|+++|++|
T Consensus 3 vr~RFAPSPTG~lHiG~artAL~n~l~Ar--~~gG~---fiLRIEDTD-------------~~Rs~~~~~~~I~e~L~wL 64 (445)
T PRK12558 3 VITRFAPSPTGYLHVGNARTALLNWLYAR--KHGGK---FILRIDDTD-------------LERSKQEYADAIAEDLKWL 64 (445)
T ss_pred eeEEeCCCCCCcccHHHHHHHHHHHHHHH--HhCCE---EEEEeccCC-------------cccchHHHHHHHHHHHHHc
Confidence 46677889999999999999998888888 44454 444455443 2334477899999999999
Q ss_pred CcccCccccCCChhhHHHHHHHHHHHHhCCCeee
Q 046127 172 DIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYK 205 (345)
Q Consensus 172 gI~~D~f~~T~~~~~~~~v~~~~~~L~~kG~iy~ 205 (345)
||.+|.+++.+ ...+.+.+++++|.++|++|+
T Consensus 65 GI~~De~y~QS--er~~~y~~~~e~L~e~G~AY~ 96 (445)
T PRK12558 65 GINWDRTFRQS--DRFDRYDEAAEKLKAAGRLYP 96 (445)
T ss_pred CCCCCccccHH--HHHHHHHHHHHHHHHCCCEEE
Confidence 99999876655 345688999999999999994
|
|
| >cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=98.86 E-value=7.2e-09 Score=95.69 Aligned_cols=94 Identities=19% Similarity=0.134 Sum_probs=73.8
Q ss_pred EEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhc
Q 046127 92 VLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKDL 171 (345)
Q Consensus 92 ~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~~l 171 (345)
+++.-.|.|||+|||||++++++...+|| ...|.=+++ +||.+ +........+.|.++|+.|
T Consensus 2 v~~RFAPsPtG~lHlG~~~~al~~~l~Ar--~~~G~~iLR---ieDtD-------------~~R~~~~~~~~I~~dL~wl 63 (238)
T cd00807 2 VVTRFPPEPNGYLHIGHAKAILLNFGYAK--KYGGRCNLR---FDDTN-------------PEKEEEEYVDSIKEDVKWL 63 (238)
T ss_pred ceEecCCCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEE---ecCCC-------------CcccchHHHHHHHHHHHHc
Confidence 46777899999999999999999999999 456654443 44432 3334556789999999999
Q ss_pred CcccCccccCCChhhHHHHHHHHHHHHhCCCeee
Q 046127 172 DIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYK 205 (345)
Q Consensus 172 gI~~D~f~~T~~~~~~~~v~~~~~~L~~kG~iy~ 205 (345)
|+.+|..+. .+.+.+.-++...+|.++|.+|.
T Consensus 64 Gl~wD~~~~--QS~r~~~Y~~~~~~L~~~g~aY~ 95 (238)
T cd00807 64 GIKPYKVTY--ASDYFDQLYEYAEQLIKKGKAYV 95 (238)
T ss_pred CCCCCCcee--cccCHHHHHHHHHHHHHcCCeec
Confidence 999994433 33567788889999999999998
|
Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. |
| >PLN03233 putative glutamate-tRNA ligase; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.1e-08 Score=104.13 Aligned_cols=96 Identities=18% Similarity=0.170 Sum_probs=76.9
Q ss_pred CEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Q 046127 90 PFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWK 169 (345)
Q Consensus 90 ~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~ 169 (345)
.-+++.-+|.|||+|||||++++++...+|| ...|.-+++ +||.+ |..-..++.+.|.++|+
T Consensus 10 g~v~tRFAPsPtG~LHiGharaAlln~l~Ar--~~gG~~iLR---iEDTD-------------p~R~~~e~~~~I~~dL~ 71 (523)
T PLN03233 10 GQIVTRFPPEPSGYLHIGHAKAALLNDYYAR--RYKGRLILR---FDDTN-------------PSKEKAEFEESIIEDLG 71 (523)
T ss_pred CeEEEeeCCCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEE---ECCCC-------------CCccchHHHHHHHHHHH
Confidence 3478899999999999999999999999999 455654444 44443 33345568899999999
Q ss_pred hcCcccCccccCCChhhHHHHHHHHHHHHhCCCeee
Q 046127 170 DLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYK 205 (345)
Q Consensus 170 ~lgI~~D~f~~T~~~~~~~~v~~~~~~L~~kG~iy~ 205 (345)
.||+.+|..+.++ .+.+...+...+|.++|.+|.
T Consensus 72 WLGl~wD~~~~qS--dr~~~y~~~a~~Li~~G~AY~ 105 (523)
T PLN03233 72 KIEIKPDSVSFTS--DYFEPIRCYAIILIEEGLAYM 105 (523)
T ss_pred HhCCCCCCCcccc--ccHHHHHHHHHHHHHcCCeEe
Confidence 9999999665444 577888889999999999995
|
|
| >PTZ00402 glutamyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=2e-08 Score=103.29 Aligned_cols=95 Identities=20% Similarity=0.193 Sum_probs=75.5
Q ss_pred CEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Q 046127 90 PFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWK 169 (345)
Q Consensus 90 ~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~ 169 (345)
.-+++.-+|.|||+|||||++++++...+|| ...|.-+++ +||. +|.....++.+.|.++|+
T Consensus 51 ~~v~tRFAPsPtGyLHIGharaAllN~l~Ar--~~gG~~iLR---iEDT-------------Dp~R~~~e~~d~IleDL~ 112 (601)
T PTZ00402 51 GKVVTRFPPEASGFLHIGHAKAALINSMLAD--KYKGKLVFR---FDDT-------------NPSKEKEHFEQAILDDLA 112 (601)
T ss_pred CeeEEeeCCCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEE---EcCC-------------CCcccCHHHHHHHHHHHH
Confidence 3478899999999999999999999999999 456654443 4443 233345678999999999
Q ss_pred hcCcccCc-cccCCChhhHHHHHHHHHHHHhCCCee
Q 046127 170 DLDIAYDK-FIRTTEPKHEAIVKEFYSSVLANGDIY 204 (345)
Q Consensus 170 ~lgI~~D~-f~~T~~~~~~~~v~~~~~~L~~kG~iy 204 (345)
.||+.+|. .+..+ .+.+...+...+|.++|.+|
T Consensus 113 WLGl~wDe~~~~QS--dr~d~y~e~a~~Li~~G~AY 146 (601)
T PTZ00402 113 TLGVSWDVGPTYSS--DYMDLMYEKAEELIKKGLAY 146 (601)
T ss_pred HCCCCCCCceeecc--ccHHHHHHHHHHHHHcCCEE
Confidence 99999995 33344 57788888999999999999
|
|
| >COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.4e-08 Score=102.39 Aligned_cols=94 Identities=22% Similarity=0.217 Sum_probs=75.7
Q ss_pred EEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhc
Q 046127 92 VLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKDL 171 (345)
Q Consensus 92 ~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~~l 171 (345)
+++.-+|.|||+|||||+|+++.-..+|| ...|.=++++=-+| |+.-..++.+.|.++|+.|
T Consensus 10 v~tRFAPsPtG~LHiG~artAl~N~~~Ar--~~~G~fiLRiEDTD----------------~~R~~~e~~~~I~~~L~WL 71 (472)
T COG0008 10 VRTRFAPSPTGYLHIGHARTALLNYLYAR--KYGGKFILRIEDTD----------------PERETPEAEDAILEDLEWL 71 (472)
T ss_pred eEEEECcCCCCccchHHHHHHHHHHHHHH--HhCCEEEEEecCCC----------------CCCCCHHHHHHHHHHHHhc
Confidence 88889999999999999999999999999 56676665544333 2233445788999999999
Q ss_pred CcccCc-cccCCChhhHHHHHHHHHHHHhCCCeee
Q 046127 172 DIAYDK-FIRTTEPKHEAIVKEFYSSVLANGDIYK 205 (345)
Q Consensus 172 gI~~D~-f~~T~~~~~~~~v~~~~~~L~~kG~iy~ 205 (345)
|+.+|. .++.+ .+.+.-.+...+|+++|.+|.
T Consensus 72 Gl~wde~~~~QS--~r~~~Y~~~~~~Li~~G~AY~ 104 (472)
T COG0008 72 GLDWDEGPYYQS--ERFDIYYEYAEKLIEKGKAYV 104 (472)
T ss_pred CCCCCCceeehh--hhHHHHHHHHHHHHHCCCeEE
Confidence 999996 44444 577888889999999999994
|
|
| >TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.3e-08 Score=96.08 Aligned_cols=93 Identities=16% Similarity=0.161 Sum_probs=71.2
Q ss_pred EEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhcC
Q 046127 93 LTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKDLD 172 (345)
Q Consensus 93 I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~~lg 172 (345)
++.-.|.|||.|||||+|++++...+|| +..|.=++.+=-+|. ......+.+.|.++|+.||
T Consensus 2 ~~RFAPSPtG~lHiG~~rtAL~n~l~Ar--~~gG~~iLRiEDtD~----------------~R~~~~~~~~I~~dL~wLG 63 (272)
T TIGR03838 2 RGRFAPSPSGPLHFGSLVAALGSYLDAR--AHGGRWLVRIEDLDP----------------PREVPGAADDILRTLEAYG 63 (272)
T ss_pred eeeeCCCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEEeCcCCC----------------CCCChHHHHHHHHHHHHcC
Confidence 4566789999999999999999999999 556665554443331 1233457889999999999
Q ss_pred cccCcc-ccCCChhhHHHHHHHHHHHHhCCCeee
Q 046127 173 IAYDKF-IRTTEPKHEAIVKEFYSSVLANGDIYK 205 (345)
Q Consensus 173 I~~D~f-~~T~~~~~~~~v~~~~~~L~~kG~iy~ 205 (345)
|.+|.- +..+ .+.+.-.+.+++|.++|.+|.
T Consensus 64 l~wDe~~~~QS--~r~~~Y~~~~~~L~~~G~aY~ 95 (272)
T TIGR03838 64 LHWDGEVVYQS--QRHALYQAALDRLLAAGLAYP 95 (272)
T ss_pred CCCCCCeeeee--CCHHHHHHHHHHHHHcCCEEe
Confidence 999943 2333 566788888999999999993
|
This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid. |
| >PTZ00437 glutaminyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.5e-08 Score=101.91 Aligned_cols=94 Identities=19% Similarity=0.082 Sum_probs=73.2
Q ss_pred EEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhc
Q 046127 92 VLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKDL 171 (345)
Q Consensus 92 ~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~~l 171 (345)
+++.-+|.|||+|||||++.+++...+|| +..|.-+++ +||.+ |......+.+.|.++|+.|
T Consensus 52 v~tRFaPsPtG~LHiGharaalln~~~Ar--~~gG~~iLR---iEDTD-------------p~r~~~e~~~~I~~dL~wL 113 (574)
T PTZ00437 52 PYFRFPPEPNGFLHIGHAKSMNLNFGSAR--AHGGKCYLR---YDDTN-------------PETEEQVYIDAIMEMVKWM 113 (574)
T ss_pred EEEEeCCCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEE---ECCCC-------------ccccChHHHHHHHHHHHHc
Confidence 56788889999999999999999999999 455554443 44432 3335567899999999999
Q ss_pred CcccCccccCCChhhHHHHHHHHHHHHhCCCeee
Q 046127 172 DIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYK 205 (345)
Q Consensus 172 gI~~D~f~~T~~~~~~~~v~~~~~~L~~kG~iy~ 205 (345)
|+.+|..+.++ .|.+...+...+|+++|.+|.
T Consensus 114 Gi~~D~~~~qS--~y~~~~ye~A~~Li~~G~AY~ 145 (574)
T PTZ00437 114 GWKPDWVTFSS--DYFDQLHEFAVQLIKDGKAYV 145 (574)
T ss_pred CCCCCCCCcCc--hhHHHHHHHHHHHHHcCCEEE
Confidence 99999665443 566666677889999999995
|
|
| >PLN02907 glutamate-tRNA ligase | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.3e-08 Score=105.95 Aligned_cols=97 Identities=23% Similarity=0.244 Sum_probs=77.5
Q ss_pred CCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 046127 89 DPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLW 168 (345)
Q Consensus 89 ~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l 168 (345)
..-+++.-+|.|||.|||||++++++...+|| +..|.-+++ +||.+ |..-..++.+.|.++|
T Consensus 211 ~~~v~tRFaPsPtG~LHiG~ar~al~n~~~Ar--~~~G~~iLR---~eDTd-------------p~r~~~e~~~~I~~dl 272 (722)
T PLN02907 211 EGKVCTRFPPEPSGYLHIGHAKAALLNQYFAR--RYKGKLIVR---FDDTN-------------PSKESDEFVENILKDI 272 (722)
T ss_pred CCceEEeeCCCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEE---ecCCC-------------CCcCChHHHHHHHHHH
Confidence 34578999999999999999999999999999 556654443 44443 2333456889999999
Q ss_pred hhcCcccCccccCCChhhHHHHHHHHHHHHhCCCeee
Q 046127 169 KDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYK 205 (345)
Q Consensus 169 ~~lgI~~D~f~~T~~~~~~~~v~~~~~~L~~kG~iy~ 205 (345)
+.||+.+|..+.++ .+.+...+...+|+++|.+|.
T Consensus 273 ~wLG~~~d~~~~qS--~r~~~y~~~a~~Li~~G~aY~ 307 (722)
T PLN02907 273 ETLGIKYDAVTYTS--DYFPQLMEMAEKLIKEGKAYV 307 (722)
T ss_pred HHcCCCCCCccccc--ccHHHHHHHHHHHHHcCCeee
Confidence 99999999765555 577888899999999999995
|
|
| >PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=98.72 E-value=3.1e-08 Score=95.68 Aligned_cols=94 Identities=21% Similarity=0.161 Sum_probs=66.5
Q ss_pred EEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhc
Q 046127 92 VLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKDL 171 (345)
Q Consensus 92 ~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~~l 171 (345)
+++.-.|.|||+|||||++++++...+|| +..|.=++++=-+|. ......+.+.|.++|+.|
T Consensus 2 v~tRFAPsPtG~lHiG~~r~al~n~~~Ar--~~~G~~iLRieDtD~----------------~R~~~~~~~~i~~~L~wl 63 (314)
T PF00749_consen 2 VRTRFAPSPTGYLHIGHARTALLNYLFAR--KYGGKFILRIEDTDP----------------ERCRPEFYDAILEDLRWL 63 (314)
T ss_dssp -EEEE---SSSS-BHHHHHHHHHHHHHHH--HTTSEEEEEEETSST----------------TTCHHHHHHHHHHHHHHH
T ss_pred eeEeeCCCCCCCcccchhHHHHHHHHHHh--ccCceEEEecccccc----------------ccchhhHHHHHHhheeEE
Confidence 45667889999999999999999999999 666766665544431 122345788899999999
Q ss_pred CcccC-ccccCCChhhHHHHHHHHHHHHhCCCeee
Q 046127 172 DIAYD-KFIRTTEPKHEAIVKEFYSSVLANGDIYK 205 (345)
Q Consensus 172 gI~~D-~f~~T~~~~~~~~v~~~~~~L~~kG~iy~ 205 (345)
|+.+| ..+.. +.+.+.-.+..++|+++|.+|.
T Consensus 64 Gl~~D~~~~~Q--S~r~~~Y~~~~~~L~~~g~aY~ 96 (314)
T PF00749_consen 64 GLEWDYGPYYQ--SDRLEIYQEAAEKLIDKGKAYP 96 (314)
T ss_dssp T---STCEEEG--GGGHHHHHHHHHHHHHTTSEEE
T ss_pred EEecCCeEEeH--HHHHHHHHHHHHHHhhcCCCcc
Confidence 99998 44433 3677788889999999999996
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A .... |
| >PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=98.70 E-value=3.6e-08 Score=94.20 Aligned_cols=95 Identities=15% Similarity=0.159 Sum_probs=72.2
Q ss_pred EEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHhh
Q 046127 91 FVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKD 170 (345)
Q Consensus 91 ~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~~ 170 (345)
-+++.-.|.|||+|||||++++++...+|| ...|.=++ -+||.+ +......+.+.|.++|++
T Consensus 5 ~v~~RFAPSPTG~LHlG~~rtAL~n~l~Ar--~~~G~~iL---RiEDtD-------------~~R~~~~~~~~I~~dL~w 66 (299)
T PRK05710 5 PYIGRFAPSPSGPLHFGSLVAALGSWLDAR--AHGGRWLL---RIEDID-------------PPREVPGAADAILADLEW 66 (299)
T ss_pred ceeEEeCcCCCCcccHHHHHHHHHHHHHHH--HcCCEEEE---EECcCC-------------CCccchHHHHHHHHHHHH
Confidence 367788899999999999999999999998 34554444 344433 222345578899999999
Q ss_pred cCcccCc-cccCCChhhHHHHHHHHHHHHhCCCeee
Q 046127 171 LDIAYDK-FIRTTEPKHEAIVKEFYSSVLANGDIYK 205 (345)
Q Consensus 171 lgI~~D~-f~~T~~~~~~~~v~~~~~~L~~kG~iy~ 205 (345)
|||.+|. .+..+ .+.+.-.+..++|.++|.+|.
T Consensus 67 lGl~wDe~~~~QS--~r~~~Y~~~~~~L~~~G~aY~ 100 (299)
T PRK05710 67 LGLHWDGPVLYQS--QRHDAYRAALDRLRAQGLVYP 100 (299)
T ss_pred CCCCCCCCceEee--ccHHHHHHHHHHHHHCCCcee
Confidence 9999994 33333 467788889999999999994
|
|
| >cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=98.66 E-value=5.3e-08 Score=89.77 Aligned_cols=90 Identities=19% Similarity=0.213 Sum_probs=68.5
Q ss_pred EEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhc
Q 046127 92 VLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKDL 171 (345)
Q Consensus 92 ~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~~l 171 (345)
+++.-.|.|||+|||||++++++...+|| +..|.=+++ +||.+ +......+.+.|.++|+.|
T Consensus 2 v~~RFAPsPtG~lHlG~~r~al~n~l~Ar--~~~G~~iLR---ieDtD-------------~~R~~~~~~~~I~~dL~wl 63 (230)
T cd00418 2 VVTRFAPSPTGYLHIGHARTALFNFAFAR--KYGGKFILR---IEDTD-------------PERSRPEYVESILEDLKWL 63 (230)
T ss_pred ceEEeCCCCCCcccHHHHHHHHHHHHHHH--HcCCeEEEE---eCcCC-------------CCCCChHHHHHHHHHHHHc
Confidence 46677899999999999999999999999 455655554 44433 2223456789999999999
Q ss_pred CcccCc-cccCCChhhHHHHHHHHHHHHhCC
Q 046127 172 DIAYDK-FIRTTEPKHEAIVKEFYSSVLANG 201 (345)
Q Consensus 172 gI~~D~-f~~T~~~~~~~~v~~~~~~L~~kG 201 (345)
|+.+|. .+..+ .+.+.-++.+.+|.++|
T Consensus 64 Gl~wd~~~~~QS--~r~~~y~~~~~~L~~~g 92 (230)
T cd00418 64 GLDWDEGPYRQS--DRFDLYRAYAEELIKKG 92 (230)
T ss_pred CCCCCCCeeehh--cCHHHHHHHHHHHHHcC
Confidence 999995 33333 46677788889999999
|
Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind |
| >PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=6e-08 Score=96.93 Aligned_cols=91 Identities=13% Similarity=0.172 Sum_probs=70.4
Q ss_pred ccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhcCcc
Q 046127 95 TPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKDLDIA 174 (345)
Q Consensus 95 ~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~~lgI~ 174 (345)
.-.|.|||+|||||+|+++....+|| +..|.=++++=-+| +......+.+.|.++|+.||+.
T Consensus 3 RFAPSPTG~LHiG~artAL~n~l~Ar--~~gG~fiLRiEDTD----------------~~R~~~e~~~~I~~~L~WlGl~ 64 (433)
T PRK12410 3 RFAPSPTGDMHIGNLRAAIFNYIVAK--QQNEDFLIRIEDTD----------------KERNIEGKDKEILEILNLFGIS 64 (433)
T ss_pred ccCCCCCCcccHHHHHHHHHHHHHHH--HcCCEEEEEeCcCC----------------CCcCChHHHHHHHHHHHHcCCC
Confidence 34689999999999999999999999 56666555443333 1223456788999999999999
Q ss_pred cCccccCCChhhHHHHHHHHHHHHhCCCeee
Q 046127 175 YDKFIRTTEPKHEAIVKEFYSSVLANGDIYK 205 (345)
Q Consensus 175 ~D~f~~T~~~~~~~~v~~~~~~L~~kG~iy~ 205 (345)
+|.-+..+ .+.+.-.+..++|.++|.+|.
T Consensus 65 wDe~y~QS--eR~~~Y~~~a~~Li~~G~AY~ 93 (433)
T PRK12410 65 WDKLVYQS--ENLKFHRQMAEKLLSEKKAFA 93 (433)
T ss_pred CCCCeehh--ccHHHHHHHHHHHHHcCCeee
Confidence 99655444 456777888999999999994
|
|
| >TIGR00440 glnS glutaminyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=98.64 E-value=6.8e-08 Score=98.40 Aligned_cols=95 Identities=16% Similarity=0.077 Sum_probs=71.5
Q ss_pred EEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhc
Q 046127 92 VLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKDL 171 (345)
Q Consensus 92 ~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~~l 171 (345)
+++.-+|.|||.|||||++++++...+|| +..|.-+++ +||.+ |..-..++.+.|.++|+.|
T Consensus 1 V~tRFaPsPtG~LHiG~ar~al~n~~~A~--~~~G~~iLR---ieDTd-------------~~r~~~e~~~~I~~dL~wL 62 (522)
T TIGR00440 1 VHTRFPPEPNGYLHIGHAKSICLNFGYAK--YYNGTCNLR---FDDTN-------------PVKEDPEYVESIKRDVEWL 62 (522)
T ss_pred CeEecCCCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEE---EcCCC-------------cccCChHHHHHHHHHHHHc
Confidence 35677899999999999999999999999 455654444 44443 2233456789999999999
Q ss_pred CcccC-ccccCCChhhHHHHHHHHHHHHhCCCeeec
Q 046127 172 DIAYD-KFIRTTEPKHEAIVKEFYSSVLANGDIYKA 206 (345)
Q Consensus 172 gI~~D-~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~ 206 (345)
|+.+| ..+..+ .+.+...+...+|+++|.+|..
T Consensus 63 G~~~d~~~~~qS--~~~~~~~~~a~~Li~~G~AY~c 96 (522)
T TIGR00440 63 GFKWEGKIRYSS--DYFDELYRYAEELIKKGLAYVD 96 (522)
T ss_pred CCCCCCCceEcc--ccHHHHHHHHHHHHHcCCEEee
Confidence 99996 333333 4556666777999999999963
|
This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases. |
| >PRK05347 glutaminyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=7.6e-08 Score=98.34 Aligned_cols=94 Identities=17% Similarity=0.123 Sum_probs=71.1
Q ss_pred EEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhc
Q 046127 92 VLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKDL 171 (345)
Q Consensus 92 ~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~~l 171 (345)
+++.-+|.|||.|||||++++++...+|| +..|.-+++ +||.+ |.....++.+.|.++|+.|
T Consensus 30 v~tRFaPsPtG~LHiG~ar~al~n~~~Ar--~~~G~~iLR---ieDTd-------------~~r~~~e~~~~I~~dL~wL 91 (554)
T PRK05347 30 VHTRFPPEPNGYLHIGHAKSICLNFGLAQ--DYGGKCNLR---FDDTN-------------PEKEDQEYVDSIKEDVRWL 91 (554)
T ss_pred eEEEeCCCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEE---ECCCC-------------CCcCChHHHHHHHHHHHHc
Confidence 77888999999999999999999999999 455554443 44443 3334456789999999999
Q ss_pred CcccC-ccccCCChhhHHHHHHHHHHHHhCCCeee
Q 046127 172 DIAYD-KFIRTTEPKHEAIVKEFYSSVLANGDIYK 205 (345)
Q Consensus 172 gI~~D-~f~~T~~~~~~~~v~~~~~~L~~kG~iy~ 205 (345)
|+.+| ..+.++ .+.+...+...+|+++|.+|.
T Consensus 92 Gi~~d~~~~~qS--~r~~~~y~~a~~Li~~G~AY~ 124 (554)
T PRK05347 92 GFDWSGELRYAS--DYFDQLYEYAVELIKKGKAYV 124 (554)
T ss_pred CCCCCCCceeee--cCHHHHHHHHHHHHHcCCEee
Confidence 99996 333333 345555566689999999995
|
|
| >TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family | Back alignment and domain information |
|---|
Probab=98.61 E-value=7.9e-08 Score=97.56 Aligned_cols=94 Identities=19% Similarity=0.178 Sum_probs=70.9
Q ss_pred EEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhc
Q 046127 92 VLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKDL 171 (345)
Q Consensus 92 ~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~~l 171 (345)
+++.-.|.|||+|||||+|+++....+|| ...|.=+++ +||.+ +......+.+.|.++|+.|
T Consensus 2 v~~RfAPsPtG~lHiG~~rtal~n~l~Ar--~~~G~~iLR---ieDtD-------------~~R~~~~~~~~i~~~L~wl 63 (470)
T TIGR00464 2 VRTRFAPSPTGYLHIGGARTALFNYLFAK--HTGGEFILR---IEDTD-------------LERNIEEAEEAILEGLKWL 63 (470)
T ss_pred ceEeeCCCCCCcccHHHHHHHHHHHHHHH--HcCCEEEEE---eCcCC-------------CccCChHHHHHHHHHHHHC
Confidence 35667889999999999999999999999 555644444 44443 2224455788999999999
Q ss_pred CcccC-ccccCCChhhHHHHHHHHHHHHhCCCeee
Q 046127 172 DIAYD-KFIRTTEPKHEAIVKEFYSSVLANGDIYK 205 (345)
Q Consensus 172 gI~~D-~f~~T~~~~~~~~v~~~~~~L~~kG~iy~ 205 (345)
|+.+| ..++.+ .+.+.-.++..+|.++|.+|.
T Consensus 64 Gl~~de~~~~QS--~r~~~y~~~~~~L~~~g~aY~ 96 (470)
T TIGR00464 64 GISWDEGPYYQS--QRLDIYKKYAKELLEEGLAYR 96 (470)
T ss_pred CCCCCCCeeehh--CCHHHHHHHHHHHHHcCCEEe
Confidence 99999 333333 455666788899999999994
|
The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences. |
| >PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=8.4e-08 Score=101.79 Aligned_cols=94 Identities=18% Similarity=0.146 Sum_probs=74.1
Q ss_pred EEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhc
Q 046127 92 VLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKDL 171 (345)
Q Consensus 92 ~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~~l 171 (345)
+++.-+|.|||+|||||++.+++...+|| +..|.-++ -+||.+ |..-..++.+.|.++|+.|
T Consensus 32 v~tRFaPsPtG~lHiGhar~alln~~~A~--~~~G~~~L---R~eDTd-------------~~r~~~e~~~~I~~dl~wL 93 (771)
T PRK14703 32 VVTRFPPEPNGYLHIGHAKSILLNFGIAR--DYGGRCHL---RMDDTN-------------PETEDTEYVEAIKDDVRWL 93 (771)
T ss_pred eEEEeCcCCCCcccHHHHHHHHHHHHHHH--HhCCEEEE---EeCCCC-------------CCcCChHHHHHHHHHHHHc
Confidence 78889999999999999999999999998 45564444 344443 2334456789999999999
Q ss_pred CcccCc-cccCCChhhHHHHHHHHHHHHhCCCeee
Q 046127 172 DIAYDK-FIRTTEPKHEAIVKEFYSSVLANGDIYK 205 (345)
Q Consensus 172 gI~~D~-f~~T~~~~~~~~v~~~~~~L~~kG~iy~ 205 (345)
|+.+|. .+.++ .|.+...+...+|+++|.+|.
T Consensus 94 G~~wd~~~~~qS--~~~~~y~~~a~~Li~~G~aY~ 126 (771)
T PRK14703 94 GFDWGEHLYYAS--DYFERMYAYAEQLIKMGLAYV 126 (771)
T ss_pred CCCCCCCceEee--cCHHHHHHHHHHHHHcCCccc
Confidence 999984 33344 577788888899999999995
|
|
| >PRK14895 gltX glutamyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.3e-07 Score=96.12 Aligned_cols=94 Identities=24% Similarity=0.234 Sum_probs=72.2
Q ss_pred EEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhc
Q 046127 92 VLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKDL 171 (345)
Q Consensus 92 ~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~~l 171 (345)
+++.-.|.|||.|||||+|+++....+|| +..|.=++++ +|.+ +......+.+.|.++|+.|
T Consensus 5 vrtRFAPSPTG~lHiG~artAL~n~l~Ar--~~gG~fiLRI---EDTD-------------~~R~~~~~~~~i~~~L~WL 66 (513)
T PRK14895 5 VITRFAPSPTGFLHIGSARTALFNYLFAR--HHNGKFLLRI---EDTD-------------KERSTKEAVEAIFSGLKWL 66 (513)
T ss_pred eeEeeCCCCCCCccHHHHHHHHHHHHHHH--HcCCEEEEEE---CCCC-------------ccccChHHHHHHHHHHHHc
Confidence 46777889999999999999999999999 5556555544 3332 2334556788999999999
Q ss_pred CcccC-ccccCCChhhHHHHHHHHHHHHhCCCeee
Q 046127 172 DIAYD-KFIRTTEPKHEAIVKEFYSSVLANGDIYK 205 (345)
Q Consensus 172 gI~~D-~f~~T~~~~~~~~v~~~~~~L~~kG~iy~ 205 (345)
|+.+| ..++.+ .+.+.-.+..++|.++|.+|.
T Consensus 67 Gl~wDe~py~QS--eR~~~Y~~~a~~Li~~G~AY~ 99 (513)
T PRK14895 67 GLDWNGEVIFQS--KRNNLYKEAALKLLQNGKAYY 99 (513)
T ss_pred CCCCCCCceeEe--CcHHHHHHHHHHHHHcCCeEE
Confidence 99999 334333 355677888899999999994
|
|
| >PRK01406 gltX glutamyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.3e-07 Score=96.22 Aligned_cols=94 Identities=22% Similarity=0.210 Sum_probs=73.2
Q ss_pred EEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhc
Q 046127 92 VLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKDL 171 (345)
Q Consensus 92 ~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~~l 171 (345)
+++.-.|.|||.|||||+|+++....+|| +..|.=+++ +||.+ +......+.+.|.++|+.|
T Consensus 5 v~~RfAPSPtG~lHiG~~rtal~n~l~Ar--~~~G~fiLR---ieDtD-------------~~R~~~~~~~~i~~~L~wl 66 (476)
T PRK01406 5 VRTRFAPSPTGYLHIGGARTALFNWLFAR--HHGGKFILR---IEDTD-------------QERSTEEAEEAILEGLKWL 66 (476)
T ss_pred eeEEeCCCCCCcccHHHHHHHHHHHHHHH--HcCCEEEEE---eCcCC-------------CCCCChHHHHHHHHHHHHC
Confidence 56778889999999999999999999999 556654444 44433 2234556788999999999
Q ss_pred CcccCcc--------ccCCChhhHHHHHHHHHHHHhCCCeee
Q 046127 172 DIAYDKF--------IRTTEPKHEAIVKEFYSSVLANGDIYK 205 (345)
Q Consensus 172 gI~~D~f--------~~T~~~~~~~~v~~~~~~L~~kG~iy~ 205 (345)
|+.+|.- ++.+ .+.+.-.+..++|.++|.+|.
T Consensus 67 Gl~~De~p~~~~~gpy~QS--~r~~~y~~~~~~L~~~g~aY~ 106 (476)
T PRK01406 67 GLDWDEGPDGGPYGPYRQS--ERLDIYKEYAEQLLEEGKAYY 106 (476)
T ss_pred CCCCCCCCccCCCCceehh--cCHHHHHHHHHHHHHcCCeee
Confidence 9999943 3333 456788888999999999995
|
|
| >KOG1195 consensus Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.2e-07 Score=94.45 Aligned_cols=182 Identities=13% Similarity=0.106 Sum_probs=122.3
Q ss_pred HHHHHHhhchhcchhhccccccccccccccccccccccccccccccc-ccccCCCCCC-CCCCCCCEEEEccCCCCCCcC
Q 046127 27 EMAARINYSIQNSLWLLNPLHSKATTHFRNRLKFRQNLFSLSKGAVF-CSYATNTDKS-GTEPADPFVLTTPLYYVNAPP 104 (345)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~I~~~~PypnG~L 104 (345)
+.|.|.+-++-...++ +.+.+-...+.|..++-+.-+.-+- -+.+...++. ....+++++|...+||.+.+.
T Consensus 52 ~~a~~~~e~~~~~~~v------~~~~~~~~~~~f~ln~~~~~k~~l~~i~~~~~~~g~~~~~~~k~iVVefSSPNIAK~F 125 (567)
T KOG1195|consen 52 EDALRWAEALPCNRIV------EEVGASGPFVQFFLNRRRLIKSVLPIIEEQREKYGKNELGSGKKIVVEFSSPNIAKPF 125 (567)
T ss_pred HHHHHHHHhcccccch------HHHhcCCCeEEEEecHHHHHHHHHHHHHHHhcccCccccccCceEEEEecCCCccccc
Confidence 4555666666665555 5566666667777776433221111 1222333321 234579999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHH------------------------------hCCCC--
Q 046127 105 HMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAA------------------------------DGGSS-- 152 (345)
Q Consensus 105 HIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~------------------------------~~g~~-- 152 (345)
|+||.|..+++-.+++..+..|++|..+...-|.|..+-..|. +...+
T Consensus 126 HvGhLRsTiiG~flanl~e~~G~~Vtr~NYLGDWGkQFgll~~g~~~~g~e~~L~~~pI~hL~dvYVk~nk~~~~~~~~~ 205 (567)
T KOG1195|consen 126 HVGHLRSTIIGNFLANLHEALGWEVTRVNYLGDWGKQFGLLALGFQLYGDEEELQLNPIKHLFDVYVKINKDAEKDPDTA 205 (567)
T ss_pred ccchhhhhhhhhHhhhhHHhhCCceeehhhhhHHHHHhhHHhccHHhhCchhhhccchHHHHHHHHHHhhhhhhhCcchH
Confidence 9999999999999999999999999987766666644222111 00000
Q ss_pred --------------------HHHHHHHHHHHHHHHHhhcCcccCccccCCChhhHHHHHHHHHHHHhCCCeeecccCccc
Q 046127 153 --------------------PSEHCDVVSQAYKTLWKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLY 212 (345)
Q Consensus 153 --------------------p~~~~~~~~~~~~~~l~~lgI~~D~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~~~y 212 (345)
.+.+-+..+....+.+++|||.||.|.-++ ..+.+..+.+...+.+.|++.+.++...+
T Consensus 206 ~~are~f~rlE~~d~e~~k~Wqrfr~lsIe~l~~~Y~Rl~v~FD~y~gES-qv~~e~~~~~~d~~rs~~l~~e~dG~~vi 284 (567)
T KOG1195|consen 206 EEAREFFKRLEDGDEEHLKLWQRFRDLSIEKLIKTYNRLNVKFDEYSGES-QVSNEKMQEALDLLRSANLTEEIDGTIVI 284 (567)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHhhhhhHHHHHHHHHHhceeeeeccchH-HHHHHHHHHHHHHHHhcCCcccCCCcEEE
Confidence 012334446677888999999999885443 26778889999999999977777776555
Q ss_pred ccC
Q 046127 213 CVN 215 (345)
Q Consensus 213 c~~ 215 (345)
.-+
T Consensus 285 dL~ 287 (567)
T KOG1195|consen 285 DLS 287 (567)
T ss_pred Eec
Confidence 433
|
|
| >PLN02859 glutamine-tRNA ligase | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.9e-07 Score=98.48 Aligned_cols=94 Identities=16% Similarity=0.063 Sum_probs=70.2
Q ss_pred EEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhc
Q 046127 92 VLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKDL 171 (345)
Q Consensus 92 ~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~~l 171 (345)
+++.-+|.|||.|||||++.+++...+||. ..|.-++ -+||.+ |..-..++.+.|.++|+.|
T Consensus 265 V~tRFaPsPtG~LHiGharaallN~~~Ar~--~~G~~~L---RieDTd-------------p~r~~~e~~~~I~edL~WL 326 (788)
T PLN02859 265 VYTRFPPEPNGYLHIGHAKAMFVDFGLAKE--RGGCCYL---RFDDTN-------------PEAEKKEYIDHIEEIVEWM 326 (788)
T ss_pred eEEEeCCCCCCcccHHHHHHHHHHHHHHHH--hCCEEEE---EecCCC-------------CCccchHHHHHHHHHHHHc
Confidence 668888999999999999999999999994 4555444 344443 3334567889999999999
Q ss_pred CcccCccccCCChhhHHHHHHHHHHHHhCCCeee
Q 046127 172 DIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYK 205 (345)
Q Consensus 172 gI~~D~f~~T~~~~~~~~v~~~~~~L~~kG~iy~ 205 (345)
|+.+|..+.+++ |.+..-+...+|+++|.+|.
T Consensus 327 G~~~d~~~~qSd--~f~~~Y~~A~~Li~~G~AY~ 358 (788)
T PLN02859 327 GWEPFKITYTSD--YFQELYELAVELIRRGHAYV 358 (788)
T ss_pred CCCCCCcccccH--hHHHHHHHHHHHHHcCCeEe
Confidence 999986544443 33333345677999999995
|
|
| >cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=98.54 E-value=2e-07 Score=86.56 Aligned_cols=90 Identities=21% Similarity=0.224 Sum_probs=67.1
Q ss_pred EEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhc
Q 046127 92 VLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKDL 171 (345)
Q Consensus 92 ~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~~l 171 (345)
+++.-.|.|||+|||||++++++...++| +..| .++.-+||.+ +......+.+.|.++|++|
T Consensus 2 v~~RfAPsPtG~LHlG~~~~al~n~l~ar--~~~G---~~ilRieDtd-------------~~r~~~~~~~~i~~dL~wl 63 (239)
T cd00808 2 VRTRFAPSPTGFLHIGGARTALFNYLFAR--KHGG---KFILRIEDTD-------------QERSVPEAEEAILEALKWL 63 (239)
T ss_pred ceEEeCCCCCCcccHHHHHHHHHHHHHHH--HcCC---eEEEEECcCC-------------CCCCchHHHHHHHHHHHHc
Confidence 35667889999999999999999999999 3444 3444455533 1223345788899999999
Q ss_pred CcccCc---------cccCCChhhHHHHHHHHHHHHhCC
Q 046127 172 DIAYDK---------FIRTTEPKHEAIVKEFYSSVLANG 201 (345)
Q Consensus 172 gI~~D~---------f~~T~~~~~~~~v~~~~~~L~~kG 201 (345)
||.+|. .+..+ .+.+...+..++|.++|
T Consensus 64 Gl~~d~~~~~~g~~~~~~QS--~r~~~y~~~~~~L~~~g 100 (239)
T cd00808 64 GLDWDEGPDVGGPYGPYRQS--ERLEIYRKYAEKLLEKG 100 (239)
T ss_pred CCCCCcCCccCCCCCCEeee--CCHHHHHHHHHHHHHcC
Confidence 999997 33333 46677778889999888
|
Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. |
| >PLN02627 glutamyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.3e-07 Score=94.69 Aligned_cols=96 Identities=24% Similarity=0.219 Sum_probs=72.6
Q ss_pred EEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhc
Q 046127 92 VLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKDL 171 (345)
Q Consensus 92 ~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~~l 171 (345)
+++.-.|.|||.|||||+|+++....+|| +..|.=++++=-+| +......+.+.|.++|+.|
T Consensus 46 vr~RFAPSPTG~LHiG~aRtAL~n~l~Ar--~~gG~fiLRIEDTD----------------~~R~~~e~~~~I~~~L~WL 107 (535)
T PLN02627 46 VRVRFAPSPTGNLHVGGARTALFNYLFAR--SKGGKFVLRIEDTD----------------LARSTKESEEAVLRDLKWL 107 (535)
T ss_pred eEEEeCCCCCCCccHHHHHHHHHHHHHHH--HhCCEEEEEeCcCC----------------CCCCChHHHHHHHHHHHHc
Confidence 66677779999999999999999999999 56666555544333 2224456788999999999
Q ss_pred CcccCcccc-------CCChhhHHHHHHHHHHHHhCCCeee
Q 046127 172 DIAYDKFIR-------TTEPKHEAIVKEFYSSVLANGDIYK 205 (345)
Q Consensus 172 gI~~D~f~~-------T~~~~~~~~v~~~~~~L~~kG~iy~ 205 (345)
||.+|.-+. -..+.+.+.-.+..++|+++|.+|.
T Consensus 108 Gl~wDegp~~gg~~gpy~QSeR~~~Y~~~a~~Li~~G~AY~ 148 (535)
T PLN02627 108 GLDWDEGPDVGGEYGPYRQSERNAIYKQYAEKLLESGHVYP 148 (535)
T ss_pred CCCCCcCcccCCCCCCeeeeccHHHHHHHHHHHHHcCCeee
Confidence 999995211 1123456777888999999999994
|
|
| >PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=98.50 E-value=2.2e-08 Score=97.37 Aligned_cols=172 Identities=15% Similarity=0.188 Sum_probs=88.4
Q ss_pred CCCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcCh--HHHH----H--HHhCCC------C
Q 046127 87 PADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGE--KIAA----A--AADGGS------S 152 (345)
Q Consensus 87 ~~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~--~I~~----~--A~~~g~------~ 152 (345)
.++.+++.++. .|+|.+|||++|..+.+|+++|-++.+|++|.+++.+||++- +|-. . ++-.|. +
T Consensus 21 ~~~~~v~~sG~-sPSG~~HIGn~rEv~~~~~V~~al~~~g~~~r~i~~~DD~D~lRKvP~~~p~~~~~~ylg~Plt~VPd 99 (360)
T PF01921_consen 21 GKEPYVFASGI-SPSGLPHIGNFREVLRADMVARALRDRGKDVRLIYFSDDMDPLRKVPPNVPNPELEKYLGKPLTRVPD 99 (360)
T ss_dssp --SEEEEEEEE---SS---HHHHHHHHHHHHHHHHHHTTT-EEEEEEEE-TTSB-----TTS-CC-CCCCTTSBTTTSB-
T ss_pred CCccEEEecCC-CCCCCcccccccchhhHHHHHHHHHHcCCCEEEEEEeecCCcccCCCCCCChHHHHHhcCCccccCCC
Confidence 34566666665 899999999999999999999999999999999999999872 1111 1 111121 1
Q ss_pred ----HHHHHHHHHHHHHHHHhhcCcccCccccCC---ChhhH----------HHHHHHHHHHHhCCCeeeccc--Ccccc
Q 046127 153 ----PSEHCDVVSQAYKTLWKDLDIAYDKFIRTT---EPKHE----------AIVKEFYSSVLANGDIYKADY--EGLYC 213 (345)
Q Consensus 153 ----p~~~~~~~~~~~~~~l~~lgI~~D~f~~T~---~~~~~----------~~v~~~~~~L~~kG~iy~~~~--~~~yc 213 (345)
...+++++...+.+.|+.|||.++....|. +..|. +.+.+++.+...+. ...++ -..+|
T Consensus 100 P~G~~~SyaeH~~~~~~~~L~~~gie~e~~s~te~Y~sG~y~~~i~~aL~~~~~I~~Il~~~~~~~--~~~~y~Pf~piC 177 (360)
T PF01921_consen 100 PFGCHESYAEHFNAPFEEFLDEFGIEYEFISQTEMYRSGRYDEQIRTALENRDEIREILNEYRGRE--RPETYSPFLPIC 177 (360)
T ss_dssp TTSSSSCHHHHHHHHHHHHHHTTT---EEEECCCCCCTTTTHHHHCHHHHTHHHHHHHHHHHHHHT----TT--SEEEEE
T ss_pred CCCCCccHHHHHHHHHHHHHHHcCCceEEEeHHHhhhCCchHHHHHHHHHhHHHHHHHHHHhcCcC--CCCCeeeeeeec
Confidence 136899999999999999999986433221 12333 33344444432221 11111 14559
Q ss_pred cCCCCccchh----hhhc---CCcCCCCCCCceEeeccccccchhHhHHHHHHHHh
Q 046127 214 VNCEEYKDEK----ELLE---NQCCPIHLKPCVARKEDNYFFALSKYQKLLEDTLT 262 (345)
Q Consensus 214 ~~c~~~l~d~----el~~---~~~c~~~~~pve~r~~~~~f~~l~~~~~~L~e~l~ 262 (345)
++|++...-. +..+ .-.|..||..-+.--...- -+|.==-++-..|.-
T Consensus 178 ~~cGri~tt~v~~~d~~~~~v~Y~c~~cG~~g~~~i~~g~-gKL~WkvDW~mRW~~ 232 (360)
T PF01921_consen 178 EKCGRIDTTEVTEYDPEGGTVTYRCEECGHEGEVDITGGN-GKLQWKVDWPMRWAA 232 (360)
T ss_dssp TTTEE--EEEEEEE--SSSEEEEE--TTS---EEETTTT--EEE-HHHHHHHHHHH
T ss_pred cccCCcccceeeEeecCCCEEEEEecCCCCEEEEecCCCc-ccccCCCcChhhhhh
Confidence 9999965421 1111 1358888876554433311 333323355555543
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and in a number of bacterial groups that include the alphaproteobacteria and spirochaetes[]. A refined crystal structures shows that the active site of LysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding [].; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IRX_A. |
| >COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.49 E-value=3.2e-07 Score=92.04 Aligned_cols=89 Identities=18% Similarity=0.217 Sum_probs=71.8
Q ss_pred CCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcCh--------HH-HHHHHhCCCC-------
Q 046127 89 DPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGE--------KI-AAAAADGGSS------- 152 (345)
Q Consensus 89 ~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~--------~I-~~~A~~~g~~------- 152 (345)
+.++|.++. +|+|.+|||++|..+.+|+++|-+|.+|++|.+++-+||++- |- +...+-.|+.
T Consensus 19 ~~~~v~tGi-sPSG~~HIGn~rEv~t~d~V~ralr~~g~~~r~I~~~DD~D~lRkvp~~lp~~~~~e~Ylg~Plt~IPdP 97 (521)
T COG1384 19 DEYVVATGI-SPSGLIHIGNFREVLTADAVRRALRDRGDEVRLIYISDDYDPLRKVPRNLPDPEELEQYLGMPLTEIPDP 97 (521)
T ss_pred CcEEEecCc-CCCCCcccccHHHHHHHHHHHHHHHHcCCceEEEEEccCCcccccCCCCCCChHHHHHHcCCccccCCCC
Confidence 667777776 899999999999999999999999999999999999999872 11 2222223432
Q ss_pred ---HHHHHHHHHHHHHHHHhhcCcccCcc
Q 046127 153 ---PSEHCDVVSQAYKTLWKDLDIAYDKF 178 (345)
Q Consensus 153 ---p~~~~~~~~~~~~~~l~~lgI~~D~f 178 (345)
...+++++...|.+.|+.+||.+...
T Consensus 98 ~G~~~Sya~hf~~~f~~~l~~~Gi~~E~~ 126 (521)
T COG1384 98 FGCCDSYAEHFLRPFEEFLDEFGIEVEFV 126 (521)
T ss_pred ccccchHHHHHHHHHHHHHHhcCCceEEE
Confidence 24688999999999999999988743
|
|
| >KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.21 E-value=5.7e-06 Score=83.10 Aligned_cols=99 Identities=17% Similarity=0.179 Sum_probs=76.1
Q ss_pred EEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHhh
Q 046127 91 FVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKD 170 (345)
Q Consensus 91 ~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~~ 170 (345)
=+++.-||-|+|.||||||..+++---++- +..| ..+.-+||. .|..--+++.+.|.+++..
T Consensus 200 kVv~RFPPEpSGyLHIGHAKAALLNqYfa~--~~~G---~LIvRFDDT-------------NPaKE~~eFe~~IleDl~~ 261 (712)
T KOG1147|consen 200 KVVTRFPPEPSGYLHIGHAKAALLNQYFAQ--AYQG---KLIVRFDDT-------------NPAKENEEFEDVILEDLSL 261 (712)
T ss_pred ceEEecCCCCCceeehhhHHHHHHHHHHHH--hcCc---eEEEEecCC-------------CcchhhHHHHHHHHHHHHH
Confidence 456677789999999999998876655543 2333 345556654 3444556788899999999
Q ss_pred cCcccCccccCCChhhHHHHHHHHHHHHhCCCeeecccC
Q 046127 171 LDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADYE 209 (345)
Q Consensus 171 lgI~~D~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~ 209 (345)
|||.+|.+..|+ .|-+.+.+.-.+|+..|.+|-.+.+
T Consensus 262 LgIkpd~~TyTS--DyF~~i~dycv~likeGKAYvDDTp 298 (712)
T KOG1147|consen 262 LGIKPDRVTYTS--DYFDEIMDYCVKLIKEGKAYVDDTP 298 (712)
T ss_pred hCcCcceeeech--hhHHHHHHHHHHHHhcCcccccCCc
Confidence 999999996666 5888888999999999999987754
|
|
| >PRK00390 leuS leucyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Probab=97.46 E-value=6.5e-05 Score=81.29 Aligned_cols=42 Identities=29% Similarity=0.416 Sum_probs=27.7
Q ss_pred hhHhHHHHHHHHhcCCCcccChHHHHHHHHHHhcCCCCcccccCCCCCCcccC
Q 046127 250 LSKYQKLLEDTLTENPDFVQPSFRLNEVQGWIKSGLRDFSISRASVDWGIPVP 302 (345)
Q Consensus 250 l~~~~~~L~e~l~~~~~~~~P~~~~~~~~~wl~~gL~D~~ISR~~~~WGIpvP 302 (345)
+..-++++.+.|++....-.| +.-.|+||||||| .+||+|||
T Consensus 390 ~~~a~~~Ii~~L~~~g~~~~~----------v~~~l~DW~ISRQ-R~WG~PIP 431 (805)
T PRK00390 390 SEEAKEAIIAWLEEKGLGKRK----------VNYRLRDWGISRQ-RYWGEPIP 431 (805)
T ss_pred HHHHHHHHHHHHHHcCCCCCc----------eEEECCCcccccc-ccCCCcee
Confidence 345566777777665311011 1125899999999 59999999
|
|
| >TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00013 Score=79.27 Aligned_cols=42 Identities=26% Similarity=0.429 Sum_probs=28.0
Q ss_pred hhHhHHHHHHHHhcCCCcccChHHHHHHHHHHhcCCCCcccccCCCCCCcccC
Q 046127 250 LSKYQKLLEDTLTENPDFVQPSFRLNEVQGWIKSGLRDFSISRASVDWGIPVP 302 (345)
Q Consensus 250 l~~~~~~L~e~l~~~~~~~~P~~~~~~~~~wl~~gL~D~~ISR~~~~WGIpvP 302 (345)
...-++.+.+.|++....-.| +...|+||||||| .+||+|||
T Consensus 386 ~~~A~~~Ii~~L~~~g~~~~~----------v~yrlrDW~ISRQ-RyWG~PIP 427 (842)
T TIGR00396 386 SSEAREAIIAMLEKEGKGKRK----------VNYRLRDWLFSRQ-RYWGEPIP 427 (842)
T ss_pred HHHHHHHHHHHHHHcCCCCce----------EEeecccceeecc-cccCCceE
Confidence 345566777777665321111 1135899999999 59999998
|
The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches. |
| >KOG1148 consensus Glutaminyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00052 Score=70.02 Aligned_cols=94 Identities=18% Similarity=0.114 Sum_probs=65.0
Q ss_pred EEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhc
Q 046127 92 VLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKDL 171 (345)
Q Consensus 92 ~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~~l 171 (345)
++|.-||-|||.|||||+-..-+-==+|+ ..|--++.- +|| ..|+.-.+++...|.+....|
T Consensus 249 V~TRFPPEPNG~LHIGHaKAInvNFgyAk---~~~G~cyLR--fDD-------------TNPEkEee~yf~sI~e~V~WL 310 (764)
T KOG1148|consen 249 VVTRFPPEPNGILHIGHAKAINVNFGYAK---AHGGVCYLR--FDD-------------TNPEKEEEEYFESIKEMVAWL 310 (764)
T ss_pred eEEeCCCCCCceeeecchhheeechhhhh---hhCCeEEEe--cCC-------------CCcchhhHHHHHHHHHHHHHh
Confidence 56788899999999999864322222333 333333221 233 246666678999999999999
Q ss_pred CcccCccccCCChhhHHHHHHHHHHHHhCCCeee
Q 046127 172 DIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYK 205 (345)
Q Consensus 172 gI~~D~f~~T~~~~~~~~v~~~~~~L~~kG~iy~ 205 (345)
|..+-.. |.++.|-+..-++-..|+++|.+|.
T Consensus 311 G~~P~kv--TysSDyFdqLy~~av~LIrkG~AYV 342 (764)
T KOG1148|consen 311 GFEPYKV--TYSSDYFDQLYELAVELIRKGKAYV 342 (764)
T ss_pred CCCceee--ecchhHHHHHHHHHHHHHhcCceeE
Confidence 9887544 4455667777777788999999994
|
|
| >KOG1149 consensus Glutamyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0012 Score=65.25 Aligned_cols=96 Identities=20% Similarity=0.175 Sum_probs=69.5
Q ss_pred EEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhc
Q 046127 92 VLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKDL 171 (345)
Q Consensus 92 ~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~~l 171 (345)
+-+.--|.|||.||||-+|+++.--.+|| ...|.=++.+--+|- ..++....+.+.++|+.+
T Consensus 34 VRvRFAPSPTGfLHlGgLRTALfNYLfAr--k~gGkFiLRiEDTDq----------------~R~v~gs~e~i~~~L~w~ 95 (524)
T KOG1149|consen 34 VRVRFAPSPTGFLHLGGLRTALFNYLFAR--KKGGKFILRIEDTDQ----------------KRLIRGSEEAIYEDLKWA 95 (524)
T ss_pred eEEeecCCCCcceehhhHHHHHHHHHHHH--hcCCeEEEEeccccc----------------cccccchHHHHHHHHHhc
Confidence 44445568999999999999999888888 567776666655541 123344467889999999
Q ss_pred CcccCccccC-------CChhhHHHHHHHHHHHHhCCCeee
Q 046127 172 DIAYDKFIRT-------TEPKHEAIVKEFYSSVLANGDIYK 205 (345)
Q Consensus 172 gI~~D~f~~T-------~~~~~~~~v~~~~~~L~~kG~iy~ 205 (345)
||.+|.-+.. -.+...+.-++..++|++.|.+|+
T Consensus 96 nl~~DEgP~~gG~~GPY~QS~R~eiY~kyae~Ll~sG~AYr 136 (524)
T KOG1149|consen 96 NLDWDEGPGVGGPFGPYEQSERLEIYKKYAEKLLESGHAYR 136 (524)
T ss_pred CCCcccCCCcCCCCCchhhHHHHHHHHHHHHHHHhcCCeeE
Confidence 9999943211 123455666777899999999996
|
|
| >PLN02563 aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.00082 Score=73.91 Aligned_cols=42 Identities=26% Similarity=0.428 Sum_probs=26.9
Q ss_pred hhHhHHHHHHHHhcCCCcccChHHHHHHHHHHhcCCCCcccccCCCCCCcccC
Q 046127 250 LSKYQKLLEDTLTENPDFVQPSFRLNEVQGWIKSGLRDFSISRASVDWGIPVP 302 (345)
Q Consensus 250 l~~~~~~L~e~l~~~~~~~~P~~~~~~~~~wl~~gL~D~~ISR~~~~WGIpvP 302 (345)
...-++.+.++|++....-.| .+| .|+||||||| .+||+|||
T Consensus 479 ~~eA~~~Ii~~L~~~g~~~~~-------v~y---~lrDW~ISRQ-RyWG~PIP 520 (963)
T PLN02563 479 SKEAAKKVIEWLEETGNGKKK-------VNY---KLRDWLFARQ-RYWGEPIP 520 (963)
T ss_pred HHHHHHHHHHHHHhCCCCCCe-------eEe---cCCCceEeee-cccCCceE
Confidence 344556666666654311111 112 4899999999 59999999
|
|
| >PRK12285 tryptophanyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.065 Score=53.03 Aligned_cols=90 Identities=21% Similarity=0.262 Sum_probs=54.7
Q ss_pred CCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 046127 88 ADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTL 167 (345)
Q Consensus 88 ~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~ 167 (345)
++++.|.++. -|+|.+||||.. ....+.+++. .|++|++..+ |.|.. ...+.+++++ .++...+..+
T Consensus 64 ~~~~~iytG~-~PSG~lHLGh~~---~~~~~~~lQ~-~g~~~~i~Ia-D~ha~------~~~~~~~e~~-~~~~~~~~~~ 130 (368)
T PRK12285 64 GKPFAVYTGF-MPSGPMHIGHKM---VFDELKWHQE-FGANVYIPIA-DDEAY------AARGLSWEET-REWAYEYILD 130 (368)
T ss_pred CCCeEEEEcc-CCCCCccHHHHH---HHHHHHHHHh-cCCCEEEEec-chHHH------hcCCCCHHHH-HHHHHHHHHH
Confidence 4566666555 467999999964 3555666666 7888766543 44421 1114566654 4445557789
Q ss_pred HhhcCcccC---ccccCCChhhHHHH
Q 046127 168 WKDLDIAYD---KFIRTTEPKHEAIV 190 (345)
Q Consensus 168 l~~lgI~~D---~f~~T~~~~~~~~v 190 (345)
+.++|++.+ .|..+..+.|.+.+
T Consensus 131 ~lA~G~Dp~k~~i~~qS~~~~~~~l~ 156 (368)
T PRK12285 131 LIALGFDPDKTEIYFQSENIKVYDLA 156 (368)
T ss_pred HHHhCCCccceEEEECCchHHHHHHH
Confidence 999999987 23333334444443
|
|
| >PLN02486 aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.12 Score=51.30 Aligned_cols=78 Identities=14% Similarity=0.049 Sum_probs=50.0
Q ss_pred CCCCEEEEccCCCCCCc-CchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHH
Q 046127 87 PADPFVLTTPLYYVNAP-PHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYK 165 (345)
Q Consensus 87 ~~~~~~I~~~~PypnG~-LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~ 165 (345)
.+++++|.++. -|+|+ +||||. +....+..+++..|..+... -.|+ +....+ +.+.+++ .++..+..
T Consensus 70 ~~~~~~vYtG~-~PSg~~lHlGHl---v~~~~~~~lQ~~~~~~~~I~-iaD~-----e~~~~~-~~~~e~i-~~~~~en~ 137 (383)
T PLN02486 70 KGEKFYLYTGR-GPSSEALHLGHL---IPFMFTKYLQDAFKVPLVIQ-LTDD-----EKFLWK-NLSVEES-QRLARENA 137 (383)
T ss_pred cCCCeEEEeCC-CCCCccccHHHH---HHHHHHHHHHHhCCCeEEEE-ecCH-----HHHhhc-CCCHHHH-HHHHHHHH
Confidence 35677777766 68895 999995 44555555555556655555 3343 333333 4666654 45556677
Q ss_pred HHHhhcCcccC
Q 046127 166 TLWKDLDIAYD 176 (345)
Q Consensus 166 ~~l~~lgI~~D 176 (345)
+++.++|++++
T Consensus 138 ~~iiA~G~dp~ 148 (383)
T PLN02486 138 KDIIACGFDVE 148 (383)
T ss_pred HHHHHhCCCCc
Confidence 78888999887
|
|
| >PRK12284 tryptophanyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.22 Score=50.17 Aligned_cols=93 Identities=16% Similarity=0.262 Sum_probs=55.9
Q ss_pred CCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhcCcccC--
Q 046127 99 YVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKDLDIAYD-- 176 (345)
Q Consensus 99 ypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~~lgI~~D-- 176 (345)
-|+|.|||||..+++-- ..+.+...|+++++.. .|.|-.- ...+|.++.+. ..++..++-+.|++++
T Consensus 10 qPTG~lHLGNylGaik~--~v~lq~q~~~~~~~~I-ADlHAlT-------~~~dp~~lr~~-~~e~aa~~LA~GlDPek~ 78 (431)
T PRK12284 10 TTTGTPHLGNYAGAIRP--AIAASRQPGVESFYFL-ADYHALI-------KCDDPARIQRS-TLEIAATWLAAGLDPERV 78 (431)
T ss_pred cCCCcchHHHHHHHHHH--HHHHHHhCCCcEEEEe-echhhcc-------CCCCHHHHHHH-HHHHHHHHHHhCCCccce
Confidence 57899999997666542 3344445688876643 3444321 23466655544 4558889999999997
Q ss_pred ccccCC-ChhhHHHHHHHHHHHHhCCCe
Q 046127 177 KFIRTT-EPKHEAIVKEFYSSVLANGDI 203 (345)
Q Consensus 177 ~f~~T~-~~~~~~~v~~~~~~L~~kG~i 203 (345)
.++.-+ -+.|.+. .|++..+-..|.+
T Consensus 79 ~if~QSdvpeh~EL-~wiL~~it~~g~L 105 (431)
T PRK12284 79 TFYRQSDIPEIPEL-TWLLTCVAGKGLL 105 (431)
T ss_pred EEEECCcchhHHHH-HHHHHhhhhHHHH
Confidence 344444 4555444 5555544444443
|
|
| >cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=94.50 E-value=0.14 Score=48.60 Aligned_cols=71 Identities=18% Similarity=0.251 Sum_probs=42.9
Q ss_pred CCCC-cCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCC--cChHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhcCcc
Q 046127 99 YVNA-PPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDE--HGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKDLDIA 174 (345)
Q Consensus 99 ypnG-~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~--~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~~lgI~ 174 (345)
-|+| .|||||..+ ...+.++++ .|++++++.|-.+ .|.+.-...++...+++ .+.++...+.+++.++|++
T Consensus 7 ~PTg~~lHlGh~~~---l~~~~~lq~-~g~~~~~~I~d~~a~~~d~sg~~~~r~~~~~~-~i~~n~~~~~~~~~a~g~d 80 (273)
T cd00395 7 DPTADSLHIGHLIG---LLTFRRFQH-AGHRPIFLIGGQTGIIGDPSGKKSERTLNDPE-EVRQNIRRIAAQYLAVGIF 80 (273)
T ss_pred cCCCCCccHHHHHH---HHHHHHHHH-CCCCEEEEEecCceeeCCCCCccccccCCCHH-HHHHHHHHHHHHHHHhcCc
Confidence 4779 699999765 445556554 6899887665211 12221111112222444 4555678899999999998
|
Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding. |
| >PLN02886 aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Probab=94.16 E-value=0.2 Score=49.86 Aligned_cols=90 Identities=17% Similarity=0.202 Sum_probs=53.6
Q ss_pred EEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHhh
Q 046127 91 FVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKD 170 (345)
Q Consensus 91 ~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~~ 170 (345)
.+++.. -|+|.+||||..+++ .-+..+++ |+++++ +=.|.|-.- ...+++++. ++...+..++-+
T Consensus 48 ~v~sGi--qPSG~lHLGnylGai--~~~v~lQ~--~~~~~~-~IADlHAlt-------~~~~~~~lr-~~~~~~~a~~lA 112 (389)
T PLN02886 48 RVVSGV--QPTGSIHLGNYLGAI--KNWVALQE--TYDTFF-CVVDLHAIT-------LPHDPRELG-KATRSTAAIYLA 112 (389)
T ss_pred eEEEEE--CCCCccHHHHHHHHH--HHHHHHhc--cCCEEE-EEecHHHhh-------CCCCHHHHH-HHHHHHHHHHHH
Confidence 344444 466999999977665 34444554 788754 345555321 233666544 444567889999
Q ss_pred cCcccC---ccccCCChhhHHHHHHHHHH
Q 046127 171 LDIAYD---KFIRTTEPKHEAIVKEFYSS 196 (345)
Q Consensus 171 lgI~~D---~f~~T~~~~~~~~v~~~~~~ 196 (345)
+|++++ .|..+..+.|.+. -+++..
T Consensus 113 ~GlDP~ks~if~QS~v~e~~eL-~wil~~ 140 (389)
T PLN02886 113 CGIDPSKASVFVQSHVPAHAEL-MWLLSC 140 (389)
T ss_pred cCcCccceEEEEeCCCchhHHH-HHHHHh
Confidence 999997 3444444555443 334433
|
|
| >PRK13354 tyrosyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.06 E-value=0.16 Score=51.10 Aligned_cols=81 Identities=15% Similarity=0.206 Sum_probs=47.8
Q ss_pred CCEEEEccCCCCCCc-CchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCC--cChHHHHHHHhCCCCHHHHHHHHHHHHH
Q 046127 89 DPFVLTTPLYYVNAP-PHMGSAYTTIAADAIARFQRLLGKKVIFITGTDE--HGEKIAAAAADGGSSPSEHCDVVSQAYK 165 (345)
Q Consensus 89 ~~~~I~~~~PypnG~-LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~--~G~~I~~~A~~~g~~p~~~~~~~~~~~~ 165 (345)
+++.|.++. -|||+ |||||+.+ .-.+.++ ...|++++++.|-.+ .|+|--...++...+.+++. ++...++
T Consensus 32 ~~~~iy~G~-dPT~~sLHlGhlv~---l~~l~~l-q~~G~~~~~ligd~ta~igDpsgk~~~R~~l~~e~i~-~n~~~i~ 105 (410)
T PRK13354 32 KPLTLYLGF-DPTAPSLHIGHLVP---LMKLKRF-QDAGHRPVILIGGFTGKIGDPSGKSKERKLLTDEQVQ-HNAKTYT 105 (410)
T ss_pred CCcEEEEcc-cCCCCCcchhhHHH---HHHHHHH-HHcCCeEEEEEcccccccCCCCcccccccCCCHHHHH-HHHHHHH
Confidence 445555554 57885 99999554 3345555 457999988776443 45544333334445555544 4556777
Q ss_pred HHHhhcCcccC
Q 046127 166 TLWKDLDIAYD 176 (345)
Q Consensus 166 ~~l~~lgI~~D 176 (345)
.++.+ +++++
T Consensus 106 ~q~~~-~ld~~ 115 (410)
T PRK13354 106 EQIFK-LFDFE 115 (410)
T ss_pred HHHHH-hcCcc
Confidence 76666 55544
|
|
| >PRK08560 tyrosyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Probab=94.04 E-value=0.3 Score=47.56 Aligned_cols=74 Identities=19% Similarity=0.183 Sum_probs=44.8
Q ss_pred CEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Q 046127 90 PFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWK 169 (345)
Q Consensus 90 ~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~ 169 (345)
++.|.++. -|+|.+||||.. ..-.+.++++ .|++|++..+ |.|..-.. ..++++ +..+...+..++.
T Consensus 30 ~~~v~~G~-~PTG~lHLG~~~---~~~~~~~lq~-~g~~~~i~Ia-D~ha~~~~------~~~~~~-i~~~~~~~~~~~~ 96 (329)
T PRK08560 30 EPKAYIGF-EPSGKIHLGHLL---TMNKLADLQK-AGFKVTVLLA-DWHAYLND------KGDLEE-IRKVAEYNKKVFE 96 (329)
T ss_pred CCEEEEcc-CCCCcchhhhhH---HHHHHHHHHH-CCCeEEEEEc-cchhhcCC------CCCHHH-HHHHHHHHHHHHH
Confidence 33333333 567999999955 3334666665 5888766543 33332110 134444 4555567888999
Q ss_pred hcCcccC
Q 046127 170 DLDIAYD 176 (345)
Q Consensus 170 ~lgI~~D 176 (345)
++|++.+
T Consensus 97 A~G~dp~ 103 (329)
T PRK08560 97 ALGLDPD 103 (329)
T ss_pred HcCCChh
Confidence 9999876
|
|
| >TIGR00233 trpS tryptophanyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=93.98 E-value=0.28 Score=47.80 Aligned_cols=88 Identities=13% Similarity=0.205 Sum_probs=49.3
Q ss_pred EEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhc
Q 046127 92 VLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKDL 171 (345)
Q Consensus 92 ~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~~l 171 (345)
.|.++. -|+|.+||||..+++..-+. ...|++|.+..+ |.|..-. ..+.+++ ........+..++-++
T Consensus 4 ~v~~G~-~PTG~~HlG~~l~~~~~~~~----~q~~~~~~i~Ia-D~ha~t~-----~~~~~~~-~~~~~~~~~~~~~lA~ 71 (328)
T TIGR00233 4 RVLTGI-QPSGKMHLGHYLGAIQTKWL----QQFGVELFICIA-DLHAITV-----KDNTDPD-ALRKAREELAADILAV 71 (328)
T ss_pred EEEEee-CCCcHhHHHHHHHHHHHHHH----HhCCCCEEEEee-cchhhcC-----CCCCCHH-HHHHHHHHHHHHHHHh
Confidence 333333 57799999997666544332 356888876543 3342111 0111333 3345556667788899
Q ss_pred CcccC--c-cccCCChhhHHHHH
Q 046127 172 DIAYD--K-FIRTTEPKHEAIVK 191 (345)
Q Consensus 172 gI~~D--~-f~~T~~~~~~~~v~ 191 (345)
|+++| . |..+.-+.|.+.+.
T Consensus 72 GlDp~k~~if~qS~~~e~~el~~ 94 (328)
T TIGR00233 72 GLDPKKTFIFLQSDYPEHYELAW 94 (328)
T ss_pred CcChhheEEEEcCCcHHHHHHHH
Confidence 99998 3 33333355555443
|
This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model. |
| >cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=93.82 E-value=0.27 Score=46.79 Aligned_cols=80 Identities=14% Similarity=0.184 Sum_probs=47.9
Q ss_pred CCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhcCcccC--
Q 046127 99 YVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKDLDIAYD-- 176 (345)
Q Consensus 99 ypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~~lgI~~D-- 176 (345)
-|+|.|||||..+++.. +.+++ ..|+++++..+ |.|..- ....+++ -+.++...+.+++.++|++++
T Consensus 7 ~PTG~lHLG~~~~al~~--~~~lQ-~ag~~~~~~Ia-D~ha~t------~~~~~~~-~~~~~~~~~~~~~lA~G~dp~k~ 75 (280)
T cd00806 7 QPSGSLHLGHYLGAFRF--WVWLQ-EAGYELFFFIA-DLHALT------VKQLDPE-ELRQNTRENAKDYLACGLDPEKS 75 (280)
T ss_pred CCCchhhHHHHHHHHHH--HHHHH-hCCCCEEEEec-chHHHh------CCCCCHH-HHHHHHHHHHHHHHHcCCCcccC
Confidence 47799999998774432 33333 34888876543 344321 1113454 455666778889999999986
Q ss_pred -ccccCCChhhHHH
Q 046127 177 -KFIRTTEPKHEAI 189 (345)
Q Consensus 177 -~f~~T~~~~~~~~ 189 (345)
.|..+.-+.|.+.
T Consensus 76 ~i~~qS~~~~~~~l 89 (280)
T cd00806 76 TIFFQSDVPEHYEL 89 (280)
T ss_pred EEEEcCCcHHHHHH
Confidence 2333433444444
|
Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding |
| >COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=93.75 E-value=0.48 Score=45.83 Aligned_cols=89 Identities=13% Similarity=0.156 Sum_probs=55.2
Q ss_pred CCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcC-CeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 046127 89 DPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLG-KKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTL 167 (345)
Q Consensus 89 ~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G-~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~ 167 (345)
+..+++.. -|+|.|||||..+++. .+++...+ +++++.. .|.|..- ..+..+++-......++..+
T Consensus 5 ~~~vlSG~--~PSG~lHLGny~ga~~----~~v~~q~~~~~~f~~I-aDlha~t------~~~~~~~~~l~~~~~e~~a~ 71 (314)
T COG0180 5 KFRVLSGI--QPSGKLHLGNYLGAIR----NWVLLQEEYYECFFFI-ADLHAIT------VRQDPTEEDLRQATREVAAD 71 (314)
T ss_pred CceEEecC--CCCCCcchhHhHHHHH----HHHHHhcccCceEEEE-ecHHHhh------cCCCChHHHHHHHHHHHHHH
Confidence 34445544 4679999999876644 34444455 3665433 4555321 12333445566777788889
Q ss_pred HhhcCcccC---ccccCCChhhHHHH
Q 046127 168 WKDLDIAYD---KFIRTTEPKHEAIV 190 (345)
Q Consensus 168 l~~lgI~~D---~f~~T~~~~~~~~v 190 (345)
+-++||+++ .|..+.-+.|.+..
T Consensus 72 ~LA~GiDP~k~~if~QS~v~e~~eLa 97 (314)
T COG0180 72 YLAVGLDPEKSTIFLQSEVPEHAELA 97 (314)
T ss_pred HHHhccCccccEEEEccCchHHHHHH
Confidence 999999998 46655566666554
|
|
| >cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=92.72 E-value=0.19 Score=47.56 Aligned_cols=71 Identities=18% Similarity=0.161 Sum_probs=45.2
Q ss_pred CCCC-cCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCC--cChHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhcCcc
Q 046127 99 YVNA-PPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDE--HGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKDLDIA 174 (345)
Q Consensus 99 ypnG-~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~--~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~~lgI~ 174 (345)
-|+| .+||||..+. ..+.+++++ |++|++..|-.+ .|.+.-...++.+.++++ ..++...+.+++.++|.+
T Consensus 8 ~PTg~~lHLG~~~~~---~~~~~lq~~-g~~~~ilI~D~~a~~~~~~~~~~~r~~~~~~~-i~~~~~~~~~~~~a~g~~ 81 (269)
T cd00805 8 DPTAPSLHLGHLVPL---MKLRDFQQA-GHEVIVLIGDATAMIGDPSGKSEERKLLDLEL-IRENAKYYKKQLKAILDF 81 (269)
T ss_pred CCCCCcccHHHHHHH---HHHHHHHHC-CCeEEEEECCCeeecCCCCCccccccCCCHHH-HHHHHHHHHHHHHHHHcc
Confidence 4779 8999997653 467777775 999877655322 122221222233456654 455667788999999985
|
Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding. |
| >PRK05912 tyrosyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Probab=92.71 E-value=0.42 Score=48.04 Aligned_cols=77 Identities=19% Similarity=0.247 Sum_probs=43.9
Q ss_pred CCEEEEccCCCCCCc-CchhHHHHHHHHHHHHHHHHHcCCeEEEEcCC------CCcChHHHHHHHhCCCCHHHHHHHHH
Q 046127 89 DPFVLTTPLYYVNAP-PHMGSAYTTIAADAIARFQRLLGKKVIFITGT------DEHGEKIAAAAADGGSSPSEHCDVVS 161 (345)
Q Consensus 89 ~~~~I~~~~PypnG~-LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~------D~~G~~I~~~A~~~g~~p~~~~~~~~ 161 (345)
+++.|.++. -|||+ |||||..+ ...+.++++ .|++++++.|- |..|... +....+.+ .+..+.
T Consensus 32 ~~~~vy~G~-dPTg~slHlGhlv~---l~~l~~lQ~-~G~~~~~ligd~ta~igDpsgk~~----~r~~l~~e-~i~~n~ 101 (408)
T PRK05912 32 EPLRIYLGF-DPTAPSLHLGHLVP---LLKLRRFQD-AGHKPIALIGGFTGMIGDPSGKSE----TRKLLTRE-QVAENA 101 (408)
T ss_pred CCCEEEEee-cCCCCCccHHhHHH---HHHHHHHHH-CCCcEEEEEcCceeEcCCCCCCch----hhccCCHH-HHHHHH
Confidence 334444444 57795 99999763 455666654 69998876543 3333222 22233433 444556
Q ss_pred HHHHHHHhhcCcccC
Q 046127 162 QAYKTLWKDLDIAYD 176 (345)
Q Consensus 162 ~~~~~~l~~lgI~~D 176 (345)
..+++++ +.++++|
T Consensus 102 ~~i~~ql-~~~ld~~ 115 (408)
T PRK05912 102 ETIKEQL-FKFLDFE 115 (408)
T ss_pred HHHHHHH-HHhcCcC
Confidence 6677776 5555554
|
|
| >PRK06266 transcription initiation factor E subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=92.55 E-value=0.22 Score=44.36 Aligned_cols=61 Identities=20% Similarity=0.183 Sum_probs=41.5
Q ss_pred CeeecccCcccccCCCCccchhhhhc-CCcCCCCCCCceEeeccccccchhHhHHHHHHHHh
Q 046127 202 DIYKADYEGLYCVNCEEYKDEKELLE-NQCCPIHLKPCVARKEDNYFFALSKYQKLLEDTLT 262 (345)
Q Consensus 202 ~iy~~~~~~~yc~~c~~~l~d~el~~-~~~c~~~~~pve~r~~~~~f~~l~~~~~~L~e~l~ 262 (345)
+-++.+...|.||.|+.-++-.|..+ +..|+.||.+++........-.|.+--++|.+.+.
T Consensus 109 l~~e~~~~~Y~Cp~C~~rytf~eA~~~~F~Cp~Cg~~L~~~dn~~~~~~l~~~I~~l~~~~~ 170 (178)
T PRK06266 109 LEEEENNMFFFCPNCHIRFTFDEAMEYGFRCPQCGEMLEEYDNSELIKELKEQIKELEEELK 170 (178)
T ss_pred hhhccCCCEEECCCCCcEEeHHHHhhcCCcCCCCCCCCeecccHHHHHHHHHHHHHHHHHhc
Confidence 45666777888999998888777665 36699999998876554444444444444444443
|
|
| >PTZ00126 tyrosyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=92.53 E-value=0.69 Score=46.08 Aligned_cols=78 Identities=13% Similarity=0.164 Sum_probs=45.4
Q ss_pred CCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 046127 89 DPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLW 168 (345)
Q Consensus 89 ~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l 168 (345)
+++.|.++. -|+|.+|||| .++..--+.++ ...|++|.+..+ |-|..-. ...|.+++++ ......+.+.+
T Consensus 65 ~~~~v~~G~-~PTG~lHLG~--g~i~~~~~~~l-q~~G~~v~~~Ia-D~hA~~~----~~~g~~l~~i-~~~~~~~~~~~ 134 (383)
T PTZ00126 65 ERPICYDGF-EPSGRMHIAQ--GILKAINVNKL-TKAGCVFVFWVA-DWFALLN----NKMGGDLEKI-RKVGEYFIEVW 134 (383)
T ss_pred CCCEEEEEE-CCCCcccccc--hHhHhHHHHHH-HhCCCeEEEEEc-cceeecC----CCCCCCHHHH-HHHHHHHHHHH
Confidence 333333333 4779999999 22222333444 355899887543 2332111 1234455554 55667788889
Q ss_pred hhcCcccC
Q 046127 169 KDLDIAYD 176 (345)
Q Consensus 169 ~~lgI~~D 176 (345)
.++|++.+
T Consensus 135 ~A~GlDp~ 142 (383)
T PTZ00126 135 KAAGMDMD 142 (383)
T ss_pred HHhCCCcc
Confidence 99999987
|
|
| >PF01927 Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 This prokaryotic family of proteins have no known function | Back alignment and domain information |
|---|
Probab=92.09 E-value=0.37 Score=41.34 Aligned_cols=31 Identities=32% Similarity=0.598 Sum_probs=24.4
Q ss_pred HHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCC
Q 046127 118 IARFQRLLGKKVIFITGTDEHGEKIAAAAADGG 150 (345)
Q Consensus 118 laR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g 150 (345)
++|+||+.|++|.+..+.+ +..|...|.+++
T Consensus 12 Lar~LR~lG~Dt~~~~~~~--D~~il~~A~~e~ 42 (147)
T PF01927_consen 12 LARWLRLLGYDTLYSRDID--DDEILELAREEG 42 (147)
T ss_pred HHHHHHHCCCcEEEeCCCC--hHHHHHHhhhCC
Confidence 6899999999999988664 456667776655
|
The proteins contain four conserved cysteines that may be involved in metal binding or disulphide bridges. |
| >PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=90.98 E-value=0.71 Score=43.98 Aligned_cols=77 Identities=16% Similarity=0.150 Sum_probs=41.5
Q ss_pred CCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHH-
Q 046127 89 DPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTL- 167 (345)
Q Consensus 89 ~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~- 167 (345)
+++.|.++. -|+|.|||||..+. ..+.++++ .|++|.+..|-. |+ ......+.+++ ........+...
T Consensus 4 ~~~~~y~G~-~PTg~lHlG~l~~~---~~~~~lq~-~g~~~~i~iaD~-~a----~~~~~~~~~~~-~~~~~~~~~~~~~ 72 (292)
T PF00579_consen 4 KPFRVYTGI-DPTGDLHLGHLVPI---MKLIWLQK-AGFKVIILIADL-HA----LLGDPSKGDER-KIRSRAEYNINDK 72 (292)
T ss_dssp SSEEEEEEE-ESSSS-BHHHHHHH---HHHHHHHH-TTSEEEEEEEHH-HH----HHTTTTGSSHH-HHHHHHHHHHHHH
T ss_pred CCcEEEEeE-CCCCcccchHHHHH---HHHHHHHh-cCCccceEecch-hh----cccCcccccHH-HHHHHHHHHHHHH
Confidence 445555554 47799999988765 34445544 899998876532 11 00011111222 233344444444
Q ss_pred -HhhcCcccC
Q 046127 168 -WKDLDIAYD 176 (345)
Q Consensus 168 -l~~lgI~~D 176 (345)
+-++|++.+
T Consensus 73 ~~la~g~d~~ 82 (292)
T PF00579_consen 73 AILALGLDPE 82 (292)
T ss_dssp HHHHTTSHTT
T ss_pred HHHHhccCcc
Confidence 678998875
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A .... |
| >PRK00927 tryptophanyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=90.84 E-value=0.8 Score=44.72 Aligned_cols=65 Identities=15% Similarity=0.143 Sum_probs=41.5
Q ss_pred CCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhcCcccC
Q 046127 99 YVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKDLDIAYD 176 (345)
Q Consensus 99 ypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~~lgI~~D 176 (345)
-|+|.+||||..+.+. -+.+++.. ++|.+..+ |.|-.- ...++++ +..+...+..++-++|++++
T Consensus 9 ~PTG~lHLG~~~g~~~--~~~~lQ~~--~~~~~~Ia-D~ha~t-------~~~~~~~-i~~~~~~~~~~~lA~GlDp~ 73 (333)
T PRK00927 9 QPTGKLHLGNYLGAIK--NWVELQDE--YECFFCIA-DLHALT-------VPQDPEE-LRENTRELAADYLACGIDPE 73 (333)
T ss_pred CCCccchHHhHHHHHH--HHHHHHhc--CCeEEEEe-cHHHHh-------CCCCHHH-HHHHHHHHHHHHHeEccChh
Confidence 4679999999887653 35556553 77766553 333211 1225554 44455668888999999987
|
|
| >KOG0435 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=90.47 E-value=0.07 Score=55.84 Aligned_cols=60 Identities=27% Similarity=0.491 Sum_probs=40.9
Q ss_pred cCCCCcccccCCCCCCcccCC----C------------------------------------------------CCCcEE
Q 046127 283 SGLRDFSISRASVDWGIPVPN----D------------------------------------------------NKQTIY 310 (345)
Q Consensus 283 ~gL~D~~ISR~~~~WGIpvP~----~------------------------------------------------~~~~iy 310 (345)
..|+||-|||| .+||.|||. + +..+++
T Consensus 417 ~kLkDWLiSRQ-RyWGTPIPivhc~~cG~vpVpes~LPV~LP~l~~~~~kG~Pls~~~e~vn~~cP~cg~pAkRETDTMD 495 (876)
T KOG0435|consen 417 YKLKDWLISRQ-RYWGTPIPIVHCDDCGAVPVPESELPVTLPELNDFTPKGPPLSKADEWVNVDCPRCGEPAKRETDTMD 495 (876)
T ss_pred chhhhhhhhhh-hccCCCcceEEcCCCCcccCcHHHCCcccccccccCCCCCcccchhhheeccCccCCCcccccccccc
Confidence 46899999999 599999982 0 257899
Q ss_pred EecCchhHHHHhcCCCCCCCchhhhhhC-cCCCC
Q 046127 311 VWFDALLGYISALSEDRDQPSLRTAVSS-GWPAS 343 (345)
Q Consensus 311 VWfdal~gYls~~~~~~~~~~~~~~~~~-~w~~~ 343 (345)
+|+|+-+=|+-.+..-...-+.+....+ +.|-|
T Consensus 496 TFvDSsWYYlRylDpkN~e~~~d~a~a~k~MPVD 529 (876)
T KOG0435|consen 496 TFVDSSWYYLRYLDPKNPEEPFDKAKAKKNMPVD 529 (876)
T ss_pred hhhccceeeEeecCCCCcccccchhhhhccCcee
Confidence 9999998888777643322233344333 34544
|
|
| >PRK12556 tryptophanyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=89.84 E-value=2.3 Score=41.53 Aligned_cols=93 Identities=15% Similarity=0.257 Sum_probs=52.6
Q ss_pred CEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Q 046127 90 PFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWK 169 (345)
Q Consensus 90 ~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~ 169 (345)
+.+++..- |+|.+||||..+++-- ..+.+...|.++++.. .|.|-. ....+++++ .++......++-
T Consensus 4 ~~v~sGiq--PTG~~HLGnylga~k~--~~~lq~~~~~~~~~~I-ADlHal-------t~~~~~~~l-~~~~~~~~~~~l 70 (332)
T PRK12556 4 KIMLTGIK--PTGYPHLGNYIGAIKP--ALQMAKNYEGKALYFI-ADYHAL-------NAVHDPEQF-RSYTREVAATWL 70 (332)
T ss_pred CEEEEEEC--CCCcchHHHHHHHHHH--HHHHHHhcCCeEEEEE-echhhc-------cCCCCHHHH-HHHHHHHHHHHh
Confidence 34555554 5699999997665442 2233445566666543 344431 112366654 444556778888
Q ss_pred hcCcccC---ccccCCChhhHHHHHHHHHH
Q 046127 170 DLDIAYD---KFIRTTEPKHEAIVKEFYSS 196 (345)
Q Consensus 170 ~lgI~~D---~f~~T~~~~~~~~v~~~~~~ 196 (345)
+.|++++ .|..+.-+.|.+.. +++..
T Consensus 71 A~GlDP~k~~if~qS~v~~~~eL~-~il~~ 99 (332)
T PRK12556 71 SLGLDPEDVIFYRQSDVPEIFELA-WILSC 99 (332)
T ss_pred heeecccceEEEECCCchHHHHHH-HHHHc
Confidence 9999997 34444445555433 34443
|
|
| >TIGR00234 tyrS tyrosyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=88.70 E-value=1.1 Score=44.69 Aligned_cols=78 Identities=17% Similarity=0.191 Sum_probs=40.8
Q ss_pred EEEccCCCCCC-cCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCC--cChHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 046127 92 VLTTPLYYVNA-PPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDE--HGEKIAAAAADGGSSPSEHCDVVSQAYKTLW 168 (345)
Q Consensus 92 ~I~~~~PypnG-~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~--~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l 168 (345)
.+.++. -||| .|||||..+ .-.+.++++ .|++|.++.|--+ .|.|.-....+...+.++ +.++...+..++
T Consensus 32 ~vy~G~-dPTg~~lHlGh~v~---l~~l~~lq~-~G~~~~iligd~ta~igdpsg~~~~R~~~~~~~-i~~n~~~i~~~l 105 (377)
T TIGR00234 32 KLYVGF-DPTAPSLHLGHLVP---LLKLRDFQQ-AGHEVIVLLGDATALIGDPSGKSEERKLLTREE-VQENAENIKKQI 105 (377)
T ss_pred EEEEee-CCCCCCccHHHHHH---HHHHHHHHH-CCCcEEEEEeccchhhcCCCChHHHhhcCCHHH-HHHHHHHHHHHH
Confidence 333333 5789 899999664 344566655 7999988654211 233432222222333333 334445554443
Q ss_pred hhcCcccC
Q 046127 169 KDLDIAYD 176 (345)
Q Consensus 169 ~~lgI~~D 176 (345)
..|+++|
T Consensus 106 -a~gld~~ 112 (377)
T TIGR00234 106 -ARFLDFE 112 (377)
T ss_pred -HHhCChh
Confidence 4555543
|
This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples. |
| >COG1656 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.23 E-value=0.92 Score=39.67 Aligned_cols=89 Identities=24% Similarity=0.409 Sum_probs=48.6
Q ss_pred HHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCC---CHHHHHHHHHHHHHHHHhhcCcccCccccCCChhhHHHHHHH
Q 046127 117 AIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGS---SPSEHCDVVSQAYKTLWKDLDIAYDKFIRTTEPKHEAIVKEF 193 (345)
Q Consensus 117 vlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~---~p~~~~~~~~~~~~~~l~~lgI~~D~f~~T~~~~~~~~v~~~ 193 (345)
-+||++|+.||++.+.. +.-+..|...+.+.|. +.. ...++.. ++|+.- .|..+. ...+.+.++
T Consensus 17 ~LARwLRllGydt~~~~--~~~d~~i~~i~~~e~rIllTRD------r~L~~r~--k~g~~~-i~i~~~--s~~~Ql~e~ 83 (165)
T COG1656 17 KLARWLRLLGYDTVYSS--NESDDEIILIAKKEGRILLTRD------RELYKRA--KLGIKA-ILIRSD--SIEEQLAEF 83 (165)
T ss_pred HHHHHHHHcCCceeeec--cCCcHHHHHHHhcCCeEEEecc------HHHHHHh--hccCce-EEEeCC--CHHHHHHHH
Confidence 37999999999999987 3334456666666442 111 1111111 233321 233333 356677777
Q ss_pred HHHHHhCCCeeecccCcccccCCCCccc
Q 046127 194 YSSVLANGDIYKADYEGLYCVNCEEYKD 221 (345)
Q Consensus 194 ~~~L~~kG~iy~~~~~~~yc~~c~~~l~ 221 (345)
+.+|-.++-+... .-=|+.|+..|-
T Consensus 84 ~~~~~l~~~~~~e---~~RCp~CN~~L~ 108 (165)
T COG1656 84 LARLGLKPRLFPE---FSRCPECNGELE 108 (165)
T ss_pred HHHhccchhcccc---cccCcccCCEec
Confidence 7777655533222 334777776553
|
|
| >TIGR00373 conserved hypothetical protein TIGR00373 | Back alignment and domain information |
|---|
Probab=86.38 E-value=0.7 Score=40.26 Aligned_cols=40 Identities=18% Similarity=0.031 Sum_probs=30.5
Q ss_pred CeeecccCcccccCCCCccchhhhhc-CCcCCCCCCCceEe
Q 046127 202 DIYKADYEGLYCVNCEEYKDEKELLE-NQCCPIHLKPCVAR 241 (345)
Q Consensus 202 ~iy~~~~~~~yc~~c~~~l~d~el~~-~~~c~~~~~pve~r 241 (345)
+-++.+...+.||+|+.=++-.|+.+ +..|+.||.+++..
T Consensus 101 l~~e~~~~~Y~Cp~c~~r~tf~eA~~~~F~Cp~Cg~~L~~~ 141 (158)
T TIGR00373 101 LEFETNNMFFICPNMCVRFTFNEAMELNFTCPRCGAMLDYL 141 (158)
T ss_pred HhhccCCCeEECCCCCcEeeHHHHHHcCCcCCCCCCEeeec
Confidence 44566677888999998888777765 46799999987543
|
This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain. |
| >PRK12283 tryptophanyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=86.02 E-value=3.3 Score=41.46 Aligned_cols=80 Identities=16% Similarity=0.175 Sum_probs=47.0
Q ss_pred EEEccCCCCCCcCchhHHHHHHHHHHHHHHHH-HcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHhh
Q 046127 92 VLTTPLYYVNAPPHMGSAYTTIAADAIARFQR-LLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKD 170 (345)
Q Consensus 92 ~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr-~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~~ 170 (345)
+++.. -|+|.+||||..+.+. .+.. ..|+++++ +=.|.|-.-+ ...+++++ .++...+..++-+
T Consensus 5 v~sGi--qPSG~~HLGnylG~ik-----~wv~lq~~~~~~~-~IADlHAlt~------~~~d~~~i-r~~~~~~~a~~lA 69 (398)
T PRK12283 5 VLSGM--RPTGRLHLGHYHGVLK-----NWVKLQHEYECFF-FVADWHALTT------HYETPEVI-EKNVWDMVIDWLA 69 (398)
T ss_pred EEEEe--CCCCcchHHHHHHHHH-----HHHHHhcCCcEEE-EeecHHHHhC------CCCCHHHH-HHHHHHHHHHHHH
Confidence 44444 4669999999877543 3222 34777653 3455552111 12356544 4455668899999
Q ss_pred cCcccC---ccccCCChhh
Q 046127 171 LDIAYD---KFIRTTEPKH 186 (345)
Q Consensus 171 lgI~~D---~f~~T~~~~~ 186 (345)
+|++++ .|..+..+.|
T Consensus 70 ~GlDP~k~~if~QS~v~eh 88 (398)
T PRK12283 70 AGVDPAQATLFIQSKVPEH 88 (398)
T ss_pred cCCCccceEEEECCCchHH
Confidence 999987 3444444555
|
|
| >PTZ00348 tyrosyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=85.86 E-value=4.7 Score=43.14 Aligned_cols=83 Identities=13% Similarity=0.109 Sum_probs=44.4
Q ss_pred CEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Q 046127 90 PFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWK 169 (345)
Q Consensus 90 ~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~ 169 (345)
++.+.++. -|||.+||||. +++=+-.+-+...|++|++..+ |-|..- ..+.+.+.+.+.. ....+.+++.
T Consensus 32 ~~rv~sGi-~PTG~lHLGng---~~~aik~~~~~q~g~~~~~lIA-D~HAlt----~~~~~~~l~~i~~-~~~~~~~~~l 101 (682)
T PTZ00348 32 LIRCYDGF-EPSGRMHIAQG---IFKAVNVNKCTQAGCEFVFWVA-DWFALM----NDKVGGELEKIRI-VGRYLIEVWK 101 (682)
T ss_pred CCEEEEee-CCCCcCeeccH---HHHHHHHHHHHhCCCeEEEEEc-chhhhc----CCCCCCCHHHHHH-HHHHHHHHHH
Confidence 34444444 57899999993 2221112222357888876432 222211 1233344444332 2346777899
Q ss_pred hcCcccC--ccccCC
Q 046127 170 DLDIAYD--KFIRTT 182 (345)
Q Consensus 170 ~lgI~~D--~f~~T~ 182 (345)
++|++.+ .|+..+
T Consensus 102 A~GlDpeK~~~~~qS 116 (682)
T PTZ00348 102 AAGMDMDKVLFLWSS 116 (682)
T ss_pred HcCCCccceEEEECc
Confidence 9999988 344444
|
|
| >COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=85.47 E-value=2.6 Score=42.22 Aligned_cols=102 Identities=15% Similarity=0.120 Sum_probs=54.9
Q ss_pred CCCC-cCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCC--CCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhcCc--
Q 046127 99 YVNA-PPHMGSAYTTIAADAIARFQRLLGKKVIFITGT--DEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKDLDI-- 173 (345)
Q Consensus 99 ypnG-~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~--D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~~lgI-- 173 (345)
=||| .|||||.-+ .-.++|+ ...||+|..+.|- --.|+|.-...+. ..-..+.+..+.+.+++++..+==
T Consensus 40 DPTa~slHlGhlv~---l~kL~~f-Q~aGh~~ivLigd~ta~IgDpsGk~e~r-~~l~~e~v~~n~~~i~~ql~~~ld~k 114 (401)
T COG0162 40 DPTAPSLHLGHLVP---LMKLRRF-QDAGHKPIVLIGDATAMIGDPSGKSEER-KLLTRETVLENAETIKKQLGKFLDNK 114 (401)
T ss_pred CCCCCccchhhHHH---HHHHHHH-HHCCCeEEEEecccceecCCCCCCHHHH-hhccHHHHHHHHHHHHHHhcccCCcc
Confidence 4779 799999753 4455665 5789999987663 2345554222222 222233455566666665553211
Q ss_pred -c-cCccccCCChhhHHHHHHH-----HHHHHhCCCeee
Q 046127 174 -A-YDKFIRTTEPKHEAIVKEF-----YSSVLANGDIYK 205 (345)
Q Consensus 174 -~-~D~f~~T~~~~~~~~v~~~-----~~~L~~kG~iy~ 205 (345)
. .++.-+..+..|...+..+ +.+++++.-+-.
T Consensus 115 ~~~v~ns~w~~~~~y~~~l~~~g~~~sv~rml~~d~~~~ 153 (401)
T COG0162 115 AEFVNNSDWLKKLNYLDFLRDVGKHFSVNRMLRRDDVKK 153 (401)
T ss_pred eEEEechHHhCcCCHHHHHHHHHhHccHHHHHHhhhHHH
Confidence 1 1111122344566666666 566666655543
|
|
| >PRK12282 tryptophanyl-tRNA synthetase II; Reviewed | Back alignment and domain information |
|---|
Probab=84.01 E-value=5.7 Score=38.85 Aligned_cols=72 Identities=10% Similarity=0.026 Sum_probs=42.6
Q ss_pred EEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHhh
Q 046127 91 FVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKD 170 (345)
Q Consensus 91 ~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~~ 170 (345)
.+++.-- |+|.+||||..+++..- +.+...|. |+ ++=.|.|..- . ...+++++. ++..+...++.+
T Consensus 4 ~v~sG~~--PTG~~HLGn~l~~~~~~---~~lQ~~~~-~~-i~IaD~ha~~--~----~~~~~~~i~-~~~~~~~~~~lA 69 (333)
T PRK12282 4 IILTGDR--PTGKLHLGHYVGSLKNR---VALQNEHE-QF-VLIADQQALT--D----NAKNPEKIR-RNILEVALDYLA 69 (333)
T ss_pred EEEEeeC--CCCcchHHHHHHHHHHH---HHHHhCCC-EE-EEEccchhHh--C----CCCCHHHHH-HHHHHHHHHHHH
Confidence 4444443 56999999977654332 23344565 43 4446666311 1 234666544 445567778889
Q ss_pred cCcccC
Q 046127 171 LDIAYD 176 (345)
Q Consensus 171 lgI~~D 176 (345)
+|++.+
T Consensus 70 ~G~dp~ 75 (333)
T PRK12282 70 VGIDPA 75 (333)
T ss_pred hCcChh
Confidence 999987
|
|
| >PF13240 zinc_ribbon_2: zinc-ribbon domain | Back alignment and domain information |
|---|
Probab=83.44 E-value=0.62 Score=27.21 Aligned_cols=23 Identities=30% Similarity=0.729 Sum_probs=17.4
Q ss_pred cccCCCCccchhhhhcCCcCCCCCCCc
Q 046127 212 YCVNCEEYKDEKELLENQCCPIHLKPC 238 (345)
Q Consensus 212 yc~~c~~~l~d~el~~~~~c~~~~~pv 238 (345)
||++|+.-+++. ...|+.||+++
T Consensus 1 ~Cp~CG~~~~~~----~~fC~~CG~~l 23 (23)
T PF13240_consen 1 YCPNCGAEIEDD----AKFCPNCGTPL 23 (23)
T ss_pred CCcccCCCCCCc----CcchhhhCCcC
Confidence 799999877654 25699999874
|
|
| >smart00531 TFIIE Transcription initiation factor IIE | Back alignment and domain information |
|---|
Probab=81.54 E-value=1.3 Score=37.95 Aligned_cols=43 Identities=14% Similarity=0.063 Sum_probs=31.3
Q ss_pred hCCCeeecccCcccccCCCCccchhhhhcC------CcCCCCCCCceEe
Q 046127 199 ANGDIYKADYEGLYCVNCEEYKDEKELLEN------QCCPIHLKPCVAR 241 (345)
Q Consensus 199 ~kG~iy~~~~~~~yc~~c~~~l~d~el~~~------~~c~~~~~pve~r 241 (345)
+.-+-++.+...+.||.|+.-++..+.... ..|+.||.+++.-
T Consensus 88 ~~~l~~e~~~~~Y~Cp~C~~~y~~~ea~~~~d~~~~f~Cp~Cg~~l~~~ 136 (147)
T smart00531 88 EDKLEDETNNAYYKCPNCQSKYTFLEANQLLDMDGTFTCPRCGEELEED 136 (147)
T ss_pred HHHHhcccCCcEEECcCCCCEeeHHHHHHhcCCCCcEECCCCCCEEEEc
Confidence 334557777888999999987776655432 5799999987653
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 345 | ||||
| 2csx_A | 497 | Crystal Structure Of Aquifex Aeolicus Methionyl-Trn | 6e-71 | ||
| 1a8h_A | 500 | Methionyl-Trna Synthetase From Thermus Thermophilus | 5e-65 | ||
| 1woy_A | 500 | Crystal Structure Of Methionyl Trna Synthetase Y225 | 1e-64 | ||
| 2d54_A | 502 | Crystal Structure Of Methionyl Trna Synthetase Y225 | 4e-64 | ||
| 4dlp_A | 536 | Crystal Structure Of Methionyl-Trna Synthetase Metr | 2e-52 | ||
| 3kfl_A | 564 | Leishmania Major Methionyl-Trna Synthetase In Compl | 7e-45 | ||
| 2x1l_A | 524 | Crystal Structure Of Mycobacterium Smegmatis Methio | 7e-45 | ||
| 3tun_A | 542 | Trypanosoma Brucei Methionyl-Trna Synthetase In Com | 3e-43 | ||
| 4eg1_A | 542 | Trypanosoma Brucei Methionyl-Trna Synthetase In Com | 3e-43 | ||
| 4eg5_A | 542 | Trypanosoma Brucei Methionyl-Trna Synthetase In Com | 4e-43 | ||
| 1rqg_A | 722 | Methionyl-Trna Synthetase From Pyrococcus Abyssi Le | 4e-27 | ||
| 1p7p_A | 551 | Methionyl-trna Synthetase From Escherichia Coli Com | 2e-21 | ||
| 1qqt_A | 551 | Methionyl-Trna Synthetase From Escherichia Coli Len | 2e-21 | ||
| 3h9c_A | 547 | Structure Of Methionyl-Trna Synthetase: Crystal For | 3e-21 | ||
| 1f4l_A | 551 | Crystal Structure Of The E.Coli Methionyl-Trna Synt | 3e-21 | ||
| 3h97_A | 560 | Structure Of A Mutant Methionyl-trna Synthetase Wit | 8e-20 | ||
| 1obh_A | 878 | Leucyl-Trna Synthetase From Thermus Thermophilus Co | 3e-06 | ||
| 2v0c_A | 878 | Leucyl-Trna Synthetase From Thermus Thermophilus Co | 3e-06 | ||
| 4aq7_A | 880 | Ternary Complex Of E. Coli Leucyl-Trna Synthetase, | 6e-06 | ||
| 3ziu_A | 637 | Crystal Structure Of Mycoplasma Mobile Leucyl-trna | 1e-04 |
| >pdb|2CSX|A Chain A, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna Synthetase Complexed With Trna(Met) Length = 497 | Back alignment and structure |
|
| >pdb|1A8H|A Chain A, Methionyl-Trna Synthetase From Thermus Thermophilus Length = 500 | Back alignment and structure |
|
| >pdb|1WOY|A Chain A, Crystal Structure Of Methionyl Trna Synthetase Y225f Mutant From Thermus Thermophilus Length = 500 | Back alignment and structure |
|
| >pdb|2D54|A Chain A, Crystal Structure Of Methionyl Trna Synthetase Y225a Mutant From Thermus Thermophilus Length = 502 | Back alignment and structure |
|
| >pdb|4DLP|A Chain A, Crystal Structure Of Methionyl-Trna Synthetase Metrs From Brucella Melitensis Bound To Selenomethionine Length = 536 | Back alignment and structure |
|
| >pdb|3KFL|A Chain A, Leishmania Major Methionyl-Trna Synthetase In Complex With Methionyladenylate And Pyrophosphate Length = 564 | Back alignment and structure |
|
| >pdb|2X1L|A Chain A, Crystal Structure Of Mycobacterium Smegmatis Methionyl-Trna Synthetase In Complex With Methionine And Adenosine Length = 524 | Back alignment and structure |
|
| >pdb|3TUN|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex With Inhibitor Chem 1356 Length = 542 | Back alignment and structure |
|
| >pdb|4EG1|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex With Substrate Methionine Length = 542 | Back alignment and structure |
|
| >pdb|4EG5|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex With Inhibitor Chem 1312 Length = 542 | Back alignment and structure |
|
| >pdb|1RQG|A Chain A, Methionyl-Trna Synthetase From Pyrococcus Abyssi Length = 722 | Back alignment and structure |
|
| >pdb|1P7P|A Chain A, Methionyl-trna Synthetase From Escherichia Coli Complexed With Methionine Phosphonate Length = 551 | Back alignment and structure |
|
| >pdb|1QQT|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Length = 551 | Back alignment and structure |
|
| >pdb|3H9C|A Chain A, Structure Of Methionyl-Trna Synthetase: Crystal Form 2 Length = 547 | Back alignment and structure |
|
| >pdb|1F4L|A Chain A, Crystal Structure Of The E.Coli Methionyl-Trna Synthetase Complexed With Methionine Length = 551 | Back alignment and structure |
|
| >pdb|3H97|A Chain A, Structure Of A Mutant Methionyl-trna Synthetase With Modified Specificity Length = 560 | Back alignment and structure |
|
| >pdb|1OBH|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed With A Pre-Transfer Editing Substrate Analogue In Both Synthetic Active Site And Editing Site Length = 878 | Back alignment and structure |
|
| >pdb|2V0C|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed With A Sulphamoyl Analogue Of Leucyl-Adenylate In The Synthetic Site And An Adduct Of Amp With 5-Fluoro-1,3- Dihydro-1-Hydroxy-2,1-Benzoxaborole (An2690) In The Editing Site Length = 878 | Back alignment and structure |
|
| >pdb|4AQ7|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase, Trna(Leu) And Leucyl-Adenylate Analogue In The Aminoacylation Conformation Length = 880 | Back alignment and structure |
|
| >pdb|3ZIU|A Chain A, Crystal Structure Of Mycoplasma Mobile Leucyl-trna Synthetase With Leu-ams In The Active Site Length = 637 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A* Length = 497 | Back alignment and structure |
|---|
Score = 420 bits (1081), Expect = e-146
Identities = 131/258 (50%), Positives = 164/258 (63%), Gaps = 11/258 (4%)
Query: 89 DPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAAD 148
F +TTP+YYVN PH+G AYTTIAAD IAR+ RL V F+TGTDEHG KI A +
Sbjct: 5 KKFYVTTPIYYVNDVPHLGHAYTTIAADTIARYYRLRDYDVFFLTGTDEHGLKIQKKAEE 64
Query: 149 GGSSPSEHCDVVSQAYKTLWKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADY 208
G SP E D ++ +K LW+ L I Y KFIRTT+P H V++ + GDIY +Y
Sbjct: 65 LGISPKELVDRNAERFKKLWEFLKIEYTKFIRTTDPYHVKFVQKVFEECYKRGDIYLGEY 124
Query: 209 EGLYCVNCEEYKDEKELLENQCCPIHLKPCVARKEDNYFFALSKYQKLLEDTLTENPDFV 268
EG YCV CEE+K E EL E+ CPIH K C KE +YFF LSKYQ L + +NP+F+
Sbjct: 125 EGWYCVGCEEFKSEAELAEDHTCPIHQKKCEYIKEPSYFFRLSKYQDKLLELYEKNPEFI 184
Query: 269 QPSFRLNEVQGWIKSGLRDFSISR--ASVDWGIPVPNDNKQTIYVWFDALLGYISALSED 326
QP +R NE+ ++K GL+D S++R + V WGIPVP D + TIYVWFDAL YISAL +
Sbjct: 185 QPDYRRNEIISFVKQGLKDLSVTRPRSRVKWGIPVPFDPEHTIYVWFDALFNYISALEDK 244
Query: 327 RDQPSLRTAVSSGWPASL 344
+ WPA L
Sbjct: 245 VEI---------YWPADL 253
|
| >4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} Length = 536 | Back alignment and structure |
|---|
Score = 420 bits (1083), Expect = e-145
Identities = 108/271 (39%), Positives = 151/271 (55%), Gaps = 7/271 (2%)
Query: 77 ATNTDKSGTEPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTD 136
T G+ + + +TT + Y N PH+G AY IA DA+ARFQRL G V F+TGTD
Sbjct: 13 EAQTQGPGSMSREKYYITTAIAYPNGKPHIGHAYELIATDAMARFQRLNGMDVYFLTGTD 72
Query: 137 EHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKDLDIAYDKFIRTTEPKHEAIVKEFYSS 196
EHG K+ +A G +P + D + A++ + + L+ + D +IRT+E +H + + +
Sbjct: 73 EHGIKMLQSARKEGITPRDLADRNTSAFRRMAEVLNSSNDDYIRTSEERHYKASQAIWQA 132
Query: 197 VLANGDIYKADYEGLYCVNCEEYKDEKEL---LENQCCPIHLKPCVARKEDNYFFALSKY 253
++ANGDIYK Y G Y V E Y E+E + P +E++YFF LS Y
Sbjct: 133 MVANGDIYKGGYAGWYSVRDEAYYGEEETEVRADGVRYGPQGTPVEWVEEESYFFRLSAY 192
Query: 254 QKLLEDTLTENPDFVQPSFRLNEVQGWIKSGLRDFSISRASVDWGIPVPNDNKQTIYVWF 313
Q L D NP F+ P+ R NE+ ++KSGL+D SISR + DWGIPVP D K +YVW
Sbjct: 193 QDKLLDLYENNPGFIMPAERRNEIVSFVKSGLKDLSISRTTFDWGIPVPGDEKHVMYVWV 252
Query: 314 DALLGYISALSEDRDQPSLRTAVSSGWPASL 344
DAL YI+AL + WPA+
Sbjct: 253 DALTNYITALGYPDTTDERW----AYWPANA 279
|
| >2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A* Length = 524 | Back alignment and structure |
|---|
Score = 419 bits (1079), Expect = e-145
Identities = 97/269 (36%), Positives = 139/269 (51%), Gaps = 7/269 (2%)
Query: 80 TDKSGTEPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHG 139
++PF +TT + Y N PH+G AY IA DAIARF+RL G V ++TGTD HG
Sbjct: 3 HHHHHHGGSEPFYITTAIAYPNGVPHIGHAYEYIATDAIARFKRLDGYDVRYLTGTDVHG 62
Query: 140 EKIAAAAADGGSSPSEHCDVVSQAYKTLWKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLA 199
+K+A AA G +E S ++ L + L+I++D+FIRT++ H K + +
Sbjct: 63 QKMAETAAKEGIPAAELARRNSDVFQRLQEKLNISFDRFIRTSDADHYEASKAIWKRMAD 122
Query: 200 NGDIYKADYEGLYCVNCEEYKDEKELLE----NQCCPIHLKPCVARKEDNYFFALSKYQK 255
GDIY Y+G Y + E + E E E + P +E YFF LS Y
Sbjct: 123 AGDIYLDAYKGWYSIRDERFFTENETTEQPDGTRIATETGAPVTWTEEQTYFFRLSAYTD 182
Query: 256 LLEDTLTENPDFVQPSFRLNEVQGWIKSGLRDFSISRASVDWGIPVPNDNKQTIYVWFDA 315
L E+P+F+ P R NE+ ++ GL+D SISR + DWG+PVP+ +YVW DA
Sbjct: 183 RLLALYEEHPEFIGPDARRNEIVSFVSGGLKDLSISRTTFDWGVPVPDHPDHVMYVWVDA 242
Query: 316 LLGYISALSEDRDQPSLRTAVSSGWPASL 344
L Y++ + + WPA L
Sbjct: 243 LTNYLTGVGFPDTESES---FRRYWPADL 268
|
| >2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A Length = 500 | Back alignment and structure |
|---|
Score = 413 bits (1065), Expect = e-143
Identities = 122/257 (47%), Positives = 156/257 (60%), Gaps = 8/257 (3%)
Query: 90 PFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADG 149
F +TTP+YYVNA PH+G AYTT+ AD +AR+ RL G + F+TGTDEHGE + AA
Sbjct: 4 VFYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAA 63
Query: 150 GSSPSEHCDVVSQAYKTLWKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADYE 209
G P D VS +K W L IAYD FIRTTE +H+ +V+ V GDIY +YE
Sbjct: 64 GEDPKAFVDRVSGRFKRAWDLLGIAYDDFIRTTEERHKKVVQLVLKKVYEAGDIYYGEYE 123
Query: 210 GLYCVNCEEYKDEKELLENQCCPIHLKPCVARKEDNYFFALSKYQKLLEDTLTENPDFVQ 269
GLYCV+CE + EKEL+E CPIH +P RKE NYFF + KY+ L++ + ENPD ++
Sbjct: 124 GLYCVSCERFYTEKELVEG-LCPIHGRPVERRKEGNYFFRMEKYRPWLQEYIQENPDLIR 182
Query: 270 PSFRLNEVQGWIKSGLRDFSISRA--SVDWGIPVPNDNKQTIYVWFDALLGYISALSEDR 327
P NEV + + D SISR V WGIP+P D +VWFDALL Y+SAL
Sbjct: 183 PEGYRNEVLAMLAEPIGDLSISRPKSRVPWGIPLPWDENHVTFVWFDALLNYVSALDYPE 242
Query: 328 DQPSLRTAVSSGWPASL 344
+ A + WP +
Sbjct: 243 GE-----AYRTFWPHAW 254
|
| >3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major} Length = 564 | Back alignment and structure |
|---|
Score = 410 bits (1055), Expect = e-141
Identities = 94/271 (34%), Positives = 144/271 (53%), Gaps = 16/271 (5%)
Query: 90 PFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADG 149
F TTP+YYVNA PH+G Y+T+ D + R+ R+ G++V +TGTDEHG+K+A AAA
Sbjct: 27 VFFATTPIYYVNASPHIGHVYSTLIVDVLGRYHRVKGEEVFVMTGTDEHGQKVAEAAAKQ 86
Query: 150 GSSPSEHCDVVSQAYKTLWKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADYE 209
G SP + VS +K +++++ + FIRTT P HE +V++ + + A GDIY YE
Sbjct: 87 GVSPMDFTTSVSSEFKQCFQEMNYDMNYFIRTTNPTHEKLVQDIWKKLAAKGDIYLGKYE 146
Query: 210 GLYCVNCEEYKDEKELLENQC--------CPIHLKPCVARKEDNYFFALSKYQKLLEDTL 261
G Y V+ E + + + + +E+NY F LS +++ L
Sbjct: 147 GWYSVSDESFLTAQNVADGVDRDGKPCKVSLESGHVVTWVEEENYMFRLSAFRERLLKYF 206
Query: 262 TENPDFVQPSFRLNEVQGWIKSGLRDFSISRA---SVDWGIPVPNDNKQTIYVWFDALLG 318
++P+ + P FR EV ++ GL D SISR ++W IPVP D + IYVW DAL
Sbjct: 207 HDHPNCIVPEFRRREVIKTVEKGLFDLSISRKRESVMNWSIPVPGDERHCIYVWLDALFN 266
Query: 319 YISAL-----SEDRDQPSLRTAVSSGWPASL 344
Y + ++ + + WPA +
Sbjct: 267 YYTGALTRVATDGTETLDEDHHALNRWPADV 297
|
| >3tun_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, translation, nucleotide binding; HET: C13; 2.55A {Trypanosoma brucei} Length = 542 | Back alignment and structure |
|---|
Score = 321 bits (824), Expect = e-106
Identities = 91/272 (33%), Positives = 142/272 (52%), Gaps = 17/272 (6%)
Query: 90 PFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADG 149
F +T+P+YYVNA PH+G Y+T+ D I R+ R+ G++V +TGTDEHG+K+A AA
Sbjct: 10 VFFVTSPIYYVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHGQKVAEAAKQK 69
Query: 150 GSSPSEHCDVVSQAYKTLWKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADYE 209
SP + V+ +K ++ +D + D FIRTT +H+A+VKE ++ + GDIY YE
Sbjct: 70 QVSPYDFTTAVAGEFKKXFEQMDYSIDYFIRTTNEQHKAVVKELWTKLEQKGDIYLGRYE 129
Query: 210 GLYCVNCEEYKDEKELLENQC--------CPIHLKPCVARKEDNYFFALSKYQKLLEDTL 261
G Y ++ E + + + + E+NY F LS +++ L +
Sbjct: 130 GWYSISDESFLTPQNITDGVDKDGNPCKVSLESGHVVTWVSEENYMFRLSAFRERLLEWY 189
Query: 262 TENPDFVQPSFRLNEVQGWIKSGLRDFSISRA---SVDWGIPVPNDNKQTIYVWFDALLG 318
NP + P FR EV ++ GL D S+SRA +W IPVP + +YVW DAL
Sbjct: 190 HANPGCIVPEFRRREVIRAVEKGLPDLSVSRARATLHNWAIPVPGNPDHXVYVWLDALTN 249
Query: 319 YISALSEDRDQPSLRTAVSSG------WPASL 344
Y++ D+ ++ +PA +
Sbjct: 250 YLTGSRLRVDESGKEVSLVDDFNELERFPADV 281
|
| >1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1 Length = 722 | Back alignment and structure |
|---|
Score = 226 bits (579), Expect = 1e-68
Identities = 82/268 (30%), Positives = 128/268 (47%), Gaps = 37/268 (13%)
Query: 91 FVLTTPLYYVNAPPHMG-SAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADG 149
+++T+ L Y N P H G A + AD R+ RL G+ V+FI GTDEHG I+ A
Sbjct: 4 YMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALKE 63
Query: 150 GSSPSEHCDVVSQAYKTLWKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADYE 209
G SP E D + K ++ I++D F RT P H + +EF+ NG + K +
Sbjct: 64 GRSPREIVDEFHEQIKITFQRAKISFDFFGRTELPIHYKLSQEFFLKAYENGHLVKKVTK 123
Query: 210 GLYCVNCEE-------------------YKDEKEL---------LENQCCPIHLKPCVAR 241
YC + + D+ E+ L N C I +P R
Sbjct: 124 QAYCEHDKMFLPDRFVIGTCPYCGAEDQKGDQCEVCGRPLTPEILINPRCAICGRPISFR 183
Query: 242 KEDNYFFALSKYQKLLEDTLTENPDFVQPSFRLNEVQGWIKSGLRDFSISRASVDWGIPV 301
+Y+ + + + L+ + + P +P+ + N V WI+ GL + +I+R ++WGIPV
Sbjct: 184 DSAHYYIKMQDFAERLKRWIEKQP--WKPNVK-NMVLSWIEEGLEERAITR-DLNWGIPV 239
Query: 302 PNDNK----QTIYVWFDALLGYISALSE 325
P D + + +YVWF+A +GYIS E
Sbjct: 240 PLDEEDMKGKVLYVWFEAPIGYISITIE 267
|
| >3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A Length = 560 | Back alignment and structure |
|---|
Score = 176 bits (449), Expect = 8e-51
Identities = 66/268 (24%), Positives = 102/268 (38%), Gaps = 47/268 (17%)
Query: 94 TTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSP 153
T Y N H+G I AD R+QR+ G +V FI D HG I A G +P
Sbjct: 23 TCASPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQLGITP 82
Query: 154 SEHCDVVSQAYKTLWKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLYC 213
+ +SQ ++T + +I+YD + T ++ + + YS + NG I LY
Sbjct: 83 EQMIGEMSQEHQTDFAGFNISYDNYHSTHSEENRQLSELIYSRLKENGFIKNRTISQLYD 142
Query: 214 VNCEE-------------------YKDEKELLENQC--CPIHLKP-------C------- 238
Y D C C P
Sbjct: 143 PEKGMFLPDRFVKGTCPKCKSPDQYGD-------NCEVCGATYSPTELIEPKSVVSGATP 195
Query: 239 VARKEDNYFFALSKYQKLLEDTLTENPDFVQPSFRLNEVQGWIKSGLRDFSISRASVDW- 297
V R +++FF L + ++L+ Q N++Q W +SGL+ + ISR +
Sbjct: 196 VMRDSEHFFFDLPSFSEMLQAWTRSGAL--QEQVA-NKMQEWFESGLQQWDISR-DAPYF 251
Query: 298 GIPVPNDNKQTIYVWFDALLGYISALSE 325
G +PN + YVW DA +G + +
Sbjct: 252 GFEIPNAPGKYFYVWLDAPIGLMGSFKN 279
|
| >1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii} Length = 967 | Back alignment and structure |
|---|
Score = 59.6 bits (144), Expect = 7e-10
Identities = 19/67 (28%), Positives = 27/67 (40%)
Query: 80 TDKSGTEPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHG 139
+ F +T Y++ H+G A T D IARF+R+ G V+F G
Sbjct: 25 PNIRDKPKEKKFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWHITG 84
Query: 140 EKIAAAA 146
I A
Sbjct: 85 SPIVGIA 91
|
| >1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii} Length = 810 | Back alignment and structure |
|---|
Score = 58.0 bits (140), Expect = 2e-09
Identities = 19/67 (28%), Positives = 27/67 (40%)
Query: 80 TDKSGTEPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHG 139
+ F +T Y++ H+G A T D IARF+R+ G V+F G
Sbjct: 25 PNIRDKPKEKKFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWHITG 84
Query: 140 EKIAAAA 146
I A
Sbjct: 85 SPIVGIA 91
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 54.5 bits (130), Expect = 3e-08
Identities = 53/385 (13%), Positives = 112/385 (29%), Gaps = 116/385 (30%)
Query: 15 EEQTLSLQKEFEEMAARINYSIQ-----NSLWLL----NPLHSKA---------TTHFRN 56
+ + +++ + A + ++ N L +L N A TT F+
Sbjct: 217 SDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQ 276
Query: 57 -------------RLKFRQNLFSLSKG-AVFCSYATNTDKSGTEPAD-P--FVLTTPLYY 99
L + + ++ Y P D P + T P
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL------DCRPQDLPREVLTTNPR-- 328
Query: 100 VNAPPHMGSAYTTIAA---DAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSE- 155
+ IA D +A + K V D+ I ++ P+E
Sbjct: 329 ---------RLSIIAESIRDGLATWDNW--KHV----NCDKLTTIIESSLNV--LEPAEY 371
Query: 156 ------------HCDVVSQAYKTLWKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDI 203
+ + +W D+ ++ +V + + L
Sbjct: 372 RKMFDRLSVFPPSAHIPTILLSLIWFDVI--------KSDV--MVVVNKLHKYSLVEKQP 421
Query: 204 YKADYE--GLYCVNCEEYKDEKEL----LENQCCPIHLKP--CVARKEDNYFFA-----L 250
++ +Y + ++E L +++ P + D YF++ L
Sbjct: 422 KESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHL 481
Query: 251 SKYQKLLEDTLTE----NPDFVQPSFRLNEVQGWIKSG-----LRDFSISRASVDWGIPV 301
+ TL + F++ R ++ W SG L+ + +
Sbjct: 482 KNIEHPERMTLFRMVFLDFRFLEQKIR-HDSTAWNASGSILNTLQQLKFYKPYI-----C 535
Query: 302 PNDNKQTIYVWFDALLGYISALSED 326
ND K V +A+L ++ + E+
Sbjct: 536 DNDPKYERLV--NAILDFLPKIEEN 558
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 345 | |||
| 4dlp_A | 536 | Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA | 100.0 | |
| 3kfl_A | 564 | Methionyl-tRNA synthetase; parasite, aminoacyl-tRN | 100.0 | |
| 3u1f_A | 542 | Methionyl-tRNA synthetase; aminoacyl-tRNA syntheta | 100.0 | |
| 1rqg_A | 722 | Methionyl-tRNA synthetase; translation, dimerizati | 100.0 | |
| 3h99_A | 560 | Methionyl-tRNA synthetase; rossmann fold, aminoacy | 100.0 | |
| 2d5b_A | 500 | Methionyl-tRNA synthetase; rossmann fold, class 1A | 100.0 | |
| 2x1l_A | 524 | Methionyl-tRNA synthetase; nucleotide-binding, pro | 100.0 | |
| 2csx_A | 497 | Methionyl-tRNA synthetase; ligase, riken structura | 100.0 | |
| 1ile_A | 821 | Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA s | 100.0 | |
| 1gax_A | 862 | Valrs, valyl-tRNA synthetase; protein-RNA complex, | 100.0 | |
| 1ffy_A | 917 | Isoleucyl-tRNA synthetase; protein-RNA complex, me | 100.0 | |
| 2v0c_A | 878 | Aminoacyl-tRNA synthetase; ligase, nucleotide-bind | 100.0 | |
| 1wkb_A | 810 | Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, e | 100.0 | |
| 1wz2_A | 967 | Leucyl-tRNA synthetase; ligase, riken structural g | 100.0 | |
| 4arc_A | 880 | Leucine--tRNA ligase; ligase-RNA complex, nucleoti | 100.0 | |
| 2zue_A | 629 | Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase | 99.96 | |
| 1iq0_A | 592 | Arginyl-tRNA synthetase; riken structural genomics | 99.95 | |
| 3c8z_A | 414 | Cysteinyl-tRNA synthetase; cysteine ligase, rossma | 99.95 | |
| 3tqo_A | 462 | Cysteinyl-tRNA synthetase; protein synthesis, liga | 99.92 | |
| 1li5_A | 461 | Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys | 99.91 | |
| 3sp1_A | 501 | Cysteinyl-tRNA synthetase; structural genomics, se | 99.9 | |
| 1f7u_A | 607 | Arginyl-tRNA synthetase; RNA-protein complex, amin | 99.88 | |
| 1irx_A | 523 | Lysyl-tRNA synthetase; beta sandwitch, zinc-bindin | 99.74 | |
| 3fnr_A | 464 | Arginyl-tRNA synthetase; transferase, PSI-2, NYSGX | 99.72 | |
| 1nzj_A | 298 | Hypothetical protein YADB; Zn cluster, glutamyl T- | 99.05 | |
| 3aii_A | 553 | Glutamyl-tRNA synthetase; amino-acyl tRNA syntheta | 98.99 | |
| 2o5r_A | 481 | Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, g | 98.96 | |
| 1qtq_A | 553 | GLNRS, protein (glutaminyl-tRNA synthetase); gluta | 98.92 | |
| 3al0_C | 592 | Glutamyl-tRNA(Gln) amidotransferase subunit C, GL | 98.84 | |
| 2hz7_A | 851 | Glutaminyl-tRNA synthetase; rossmann fold, GLNRS c | 98.84 | |
| 2cfo_A | 492 | Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA s | 98.84 | |
| 4g6z_A | 490 | Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, | 98.73 | |
| 3afh_A | 488 | Glutamyl-tRNA synthetase 2; protein-substrate comp | 98.65 | |
| 4gri_A | 512 | Glutamate--tRNA ligase; structural genomics, seatt | 98.65 | |
| 1j09_A | 468 | Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, r | 98.57 | |
| 2ja2_A | 498 | Glutamyl-tRNA synthetase; non-discriminating gluta | 98.54 | |
| 4arc_A | 880 | Leucine--tRNA ligase; ligase-RNA complex, nucleoti | 97.43 | |
| 3jxe_A | 392 | Tryptophanyl-tRNA synthetase; adenosine triphospha | 95.76 | |
| 2cyb_A | 323 | Tyrosyl-tRNA synthetase; rossmann-fold, structural | 95.75 | |
| 3tzl_A | 322 | Tryptophanyl-tRNA synthetase; structural genomics, | 95.57 | |
| 1i6k_A | 328 | TRPRS, tryptophanyl-tRNA synthetase; class I tRNA | 95.04 | |
| 3a04_A | 372 | Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tR | 95.0 | |
| 2dlc_X | 394 | Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligas | 94.91 | |
| 3hzr_A | 386 | Tryptophanyl-tRNA synthetase; APO tRNA-ligase, str | 94.81 | |
| 1n3l_A | 372 | Tyrosyl-tRNA synthetase; rossmann fold AS catalyti | 94.79 | |
| 2g36_A | 340 | Tryptophanyl-tRNA synthetase; TM0492, structural g | 94.34 | |
| 2cya_A | 364 | Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, st | 94.23 | |
| 2zp1_A | 314 | Tyrosyl-tRNA synthetase; tRNA synthetases class I, | 94.0 | |
| 3prh_A | 388 | Tryptophanyl-tRNA synthetase; TRPRS, protein biosy | 93.85 | |
| 3foc_A | 451 | Tryptophanyl-tRNA synthetase; structural genomics, | 93.78 | |
| 1yi8_B | 351 | Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2. | 93.68 | |
| 3vgj_A | 373 | Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; | 93.49 | |
| 1r6t_A | 477 | Tryptophanyl-tRNA synthetase; class IC tRNA synthe | 93.38 | |
| 2el7_A | 337 | Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synth | 93.37 | |
| 3hv0_A | 393 | Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-bin | 93.17 | |
| 3sz3_A | 341 | Tryptophanyl-tRNA synthetase; structural genomics, | 93.12 | |
| 2ip1_A | 432 | Tryptophanyl-tRNA synthetase; rossmann fold, struc | 92.9 | |
| 1r6u_A | 437 | Tryptophanyl-tRNA synthetase; class IC tRNA synthe | 92.75 | |
| 3p0j_A | 690 | Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase | 92.72 | |
| 3i05_A | 395 | Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP | 92.65 | |
| 2cyc_A | 375 | Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacy | 92.04 | |
| 1jil_A | 420 | Tyrrs, tyrosyl-tRNA synthetase; truncation, based | 91.62 | |
| 2j5b_A | 348 | Tyrosyl-tRNA synthetase; ligase, protein biosynthe | 91.53 | |
| 3tze_A | 406 | Tryptophanyl-tRNA synthetase; structural genomics, | 91.45 | |
| 3p0j_A | 690 | Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase | 90.85 | |
| 2yy5_A | 348 | Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synt | 90.63 | |
| 3n9i_A | 346 | Tryptophanyl-tRNA synthetase; tryptophan-tRNA liga | 90.51 | |
| 2ts1_A | 419 | Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30 | 88.61 | |
| 1h3f_A | 432 | Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA sy | 87.77 | |
| 1lko_A | 191 | Rubrerythrin all-iron(II) form; reduced form, DIIR | 87.17 | |
| 2yxn_A | 322 | Tyrosyl-tRNA synthetase; tRNA synthetases class I, | 85.68 | |
| 1y42_X | 392 | Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tR | 85.15 | |
| 2pid_A | 356 | Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase | 84.73 | |
| 2jan_A | 432 | Tyrosyl-tRNA synthetase; protein biosynthesis, ami | 83.52 |
| >4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-61 Score=488.57 Aligned_cols=254 Identities=42% Similarity=0.707 Sum_probs=239.9
Q ss_pred CCCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 046127 87 PADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKT 166 (345)
Q Consensus 87 ~~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~ 166 (345)
++++++||+|+|||||+|||||+|+++++|+++||+|++|++|.+++|+|+||++|+..|++.|++|+++++++.+.|++
T Consensus 23 ~~~~~~i~~p~pypng~lHiGH~r~~v~~D~laR~lr~~G~~V~~~~g~dd~g~ki~~~a~~~g~~~~~~~~~~~~~~~~ 102 (536)
T 4dlp_A 23 SREKYYITTAIAYPNGKPHIGHAYELIATDAMARFQRLNGMDVYFLTGTDEHGIKMLQSARKEGITPRDLADRNTSAFRR 102 (536)
T ss_dssp -CCEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCCEEEeCCCCCCCCCcCcchhHHHHHHHHHHHHHHhcCCcEEEecCcCCcchHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCcccCccccCCChhhHHHHHHHHHHHHhCCCeeecccCcccccCCCCccchhhhhcC---CcCCCCCCCceEeec
Q 046127 167 LWKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLYCVNCEEYKDEKELLEN---QCCPIHLKPCVARKE 243 (345)
Q Consensus 167 ~l~~lgI~~D~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~~c~~~l~d~el~~~---~~c~~~~~pve~r~~ 243 (345)
+|++|||++|.|++|+++.|.+.++++|.+|.++|++|++++.+|||++|++++++.+++++ ..|..||.|++++.+
T Consensus 103 ~l~~lgi~~d~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~~~~~~~~~~~l~~~~~~~~~~g~~c~~~g~~~e~~~~ 182 (536)
T 4dlp_A 103 MAEVLNSSNDDYIRTSEERHYKASQAIWQAMVANGDIYKGGYAGWYSVRDEAYYGEEETEVRADGVRYGPQGTPVEWVEE 182 (536)
T ss_dssp HHHHTTCCCSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGCEECTTSCEECTTSSBCEEEEE
T ss_pred HHHHcCCCCCcceeCCCHHHHHHHHHHHHHHHHCCCEEEeceeeeecCCcCcccCHHHhhcCCCCCcccCCCCcceEEec
Confidence 99999999999999999999999999999999999999999999999999999999998742 358999999999999
Q ss_pred cccccchhHhHHHHHHHHhcCCCcccChHHHHHHHHHHhcCCCCcccccCCCCCCcccCCCCCCcEEEecCchhHHHHhc
Q 046127 244 DNYFFALSKYQKLLEDTLTENPDFVQPSFRLNEVQGWIKSGLRDFSISRASVDWGIPVPNDNKQTIYVWFDALLGYISAL 323 (345)
Q Consensus 244 ~~~f~~l~~~~~~L~e~l~~~~~~~~P~~~~~~~~~wl~~gL~D~~ISR~~~~WGIpvP~~~~~~iyVWfdal~gYls~~ 323 (345)
+||||+|++|+++|.+++++.+.++.|+.+++++.+||+++|+||||||++.+||||||+++++++||||||+++|++++
T Consensus 183 ~~~f~~l~~~~~~l~~~~~~~~~~i~P~~~~~~~~~~l~~~l~D~~ISR~~~~WGipiP~~~~~v~yvWfda~~~y~s~~ 262 (536)
T 4dlp_A 183 ESYFFRLSAYQDKLLDLYENNPGFIMPAERRNEIVSFVKSGLKDLSISRTTFDWGIPVPGDEKHVMYVWVDALTNYITAL 262 (536)
T ss_dssp EEEEECGGGGHHHHHHHHHHCTTSEESHHHHHHHHHHHHTCCCCEECEEC--CCSCBCTTCTTSEECHHHHHHHHHHHTT
T ss_pred cceEEecHHHHHHHHHHHHhCCCccCcHHHHHHHHHHHhcCCCccCCccCCCcCCeeCCCCCCCceEEeeCCcHHHHHhc
Confidence 99999999999999999999877889999999999999999999999998789999999999999999999999999999
Q ss_pred CCCCCCCchhhhhhCcCCCCC
Q 046127 324 SEDRDQPSLRTAVSSGWPASL 344 (345)
Q Consensus 324 ~~~~~~~~~~~~~~~~w~~~~ 344 (345)
+++.+. +.+.+|||+++
T Consensus 263 ~~~~~~----~~~~~~~p~dv 279 (536)
T 4dlp_A 263 GYPDTT----DERWAYWPANA 279 (536)
T ss_dssp TTTCTT----SGGGGGCSCSE
T ss_pred CCCCCc----hHHHhhCCcce
Confidence 876553 56899999874
|
| >3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-61 Score=493.43 Aligned_cols=259 Identities=37% Similarity=0.714 Sum_probs=238.7
Q ss_pred CCCCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHH
Q 046127 86 EPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYK 165 (345)
Q Consensus 86 ~~~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~ 165 (345)
+++++|+||+|+|||||+|||||+|+++++|+++||+|++|++|.+++|+|+||++|+.+|++.|++|+++++++.+.|+
T Consensus 23 ~~~~~~~i~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~dd~G~ki~~~a~~~g~~p~~~~~~~~~~~~ 102 (564)
T 3kfl_A 23 KKQKVFFATTPIYYVNASPHIGHVYSTLIVDVLGRYHRVKGEEVFVMTGTDEHGQKVAEAAAKQGVSPMDFTTSVSSEFK 102 (564)
T ss_dssp -CCCCEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEECCSHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred cCCCCEEEeCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCcEEEecCcCCCCcHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCcccCccccCCChhhHHHHHHHHHHHHhCCCeeecccCcccccCCCCccchhhhhcC-----CcCC---CCCCC
Q 046127 166 TLWKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLYCVNCEEYKDEKELLEN-----QCCP---IHLKP 237 (345)
Q Consensus 166 ~~l~~lgI~~D~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~~c~~~l~d~el~~~-----~~c~---~~~~p 237 (345)
++|++|||++|.|++|+++.|.+.++++|.+|.++|+||++++.++||+.|++++++.++.+. ..|. .||+|
T Consensus 103 ~~~~~lgi~~D~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~~~~~~~~~g~~c~~~~~~g~~ 182 (564)
T 3kfl_A 103 QCFQEMNYDMNYFIRTTNPTHEKLVQDIWKKLAAKGDIYLGKYEGWYSVSDESFLTAQNVADGVDRDGKPCKVSLESGHV 182 (564)
T ss_dssp HHHHHTTCCCSEEEETTSHHHHHHHHHHHHHHHHHTCEEEEEEEEEEETTTTEEECGGGEEEEECTTSCEEEEETTTSCB
T ss_pred HHHHHcCCCCCccccCCCHHHHHHHHHHHHHHHHCCCEEEeeeeEEecCCcCCCCCHHHhccCcCCCCCEeccccCCCCc
Confidence 999999999999999999999999999999999999999999999999999999999999742 3342 47999
Q ss_pred ceEeeccccccchhHhHHHHHHHHhcCCCcccChHHHHHHHHHHhcCCCCccccc---CCCCCCcccCCCCCCcEEEecC
Q 046127 238 CVARKEDNYFFALSKYQKLLEDTLTENPDFVQPSFRLNEVQGWIKSGLRDFSISR---ASVDWGIPVPNDNKQTIYVWFD 314 (345)
Q Consensus 238 ve~r~~~~~f~~l~~~~~~L~e~l~~~~~~~~P~~~~~~~~~wl~~gL~D~~ISR---~~~~WGIpvP~~~~~~iyVWfd 314 (345)
++++.++||||+|++|+++|.+++++++.+++|+.+++++.+||++||+|||||| ++.+||||||+++++|||||||
T Consensus 183 ~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~i~P~~~~~~~~~wl~~gl~D~~ISR~~~~~~~WGipiP~~~~~v~yVWfD 262 (564)
T 3kfl_A 183 VTWVEEENYMFRLSAFRERLLKYFHDHPNCIVPEFRRREVIKTVEKGLFDLSISRKRESVMNWSIPVPGDERHCIYVWLD 262 (564)
T ss_dssp CEEEEEEEEEECGGGGHHHHHHHHHHCTTSEESHHHHHHHHHHHHHCCCCEECEEEGGGGTTCSCEETTEEEEEECHHHH
T ss_pred cEEEecceeEEEHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHhCCCCCccccCcCCCCCCCCeecCCCCCCEEEEecc
Confidence 9999999999999999999999999887789999999999999999999999999 3589999999999999999999
Q ss_pred chhHHHHhcCCCCC-CCc--hhhhh--hCcCCCCC
Q 046127 315 ALLGYISALSEDRD-QPS--LRTAV--SSGWPASL 344 (345)
Q Consensus 315 al~gYls~~~~~~~-~~~--~~~~~--~~~w~~~~ 344 (345)
|+++|+|+++++.+ .+. ..+.+ .+|||++|
T Consensus 263 a~~~y~s~~~~~~~~~~~~~~~~~~~~~~~wp~dv 297 (564)
T 3kfl_A 263 ALFNYYTGALTRVATDGTETLDEDHHALNRWPADV 297 (564)
T ss_dssp HHTHHHHHHHEEECTTSCEEECSSSTTTTCCSCSE
T ss_pred CcHHHHHHhCccccccccccchhcchhhhcCccce
Confidence 99999999988333 210 01237 89999874
|
| >3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-61 Score=489.65 Aligned_cols=243 Identities=37% Similarity=0.682 Sum_probs=231.2
Q ss_pred CCCCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHH
Q 046127 86 EPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYK 165 (345)
Q Consensus 86 ~~~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~ 165 (345)
.+.++|+||+|+|||||.|||||+++++++|+++||+||+||+|.+++|+|+||+||+.+|+++|++|+++|+++.+.|+
T Consensus 6 ~~~k~f~Ittp~pY~nG~lHiGHa~~~~~~Dii~Ry~r~~G~~v~~v~G~D~hG~~ie~~a~k~g~~~~e~~~~~~~~~~ 85 (542)
T 3u1f_A 6 KVEKVFFVTSPIYYVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHGQKVAEAAKQKQVSPYDFTTAVAGEFK 85 (542)
T ss_dssp -CCCCEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEECCSHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred CCCCCEEEeCCCCCCCCchhhHHHHHHHHHHHHHHHHHhcCCCccccCccCcChHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCcccCccccCCChhhHHHHHHHHHHHHhCCCeeecccCcccccCCCCccchhhhhcC--------CcCCCCCCC
Q 046127 166 TLWKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLYCVNCEEYKDEKELLEN--------QCCPIHLKP 237 (345)
Q Consensus 166 ~~l~~lgI~~D~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~~c~~~l~d~el~~~--------~~c~~~~~p 237 (345)
+++++|||++|.|++|+++.|.+.++++|.+|+++|+||++.+.++||++|++||+|.++++. +.|++||.+
T Consensus 86 ~~~~~lgi~~D~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~~~l~d~~v~~~~~~~g~~~~~~~~sg~~ 165 (542)
T 3u1f_A 86 KCFEQMDYSIDYFIRTTNEQHKAVVKELWTKLEQKGDIYLGRYEGWYSISDESFLTPQNITDGVDKDGNPCKVSLESGHV 165 (542)
T ss_dssp HHHHHHTCCCSEEEETTCHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEEEEECTTSCEEEEETTTCCB
T ss_pred HHHHHhCCccCcCccCCCHHHHHHHHHHHHHHhhcCcEEecceeEEeeccCcccchhhhhhccccccCccccccCCCCCc
Confidence 999999999999999999999999999999999999999999999999999999999998751 348889999
Q ss_pred ceEeeccccccchhHhHHHHHHHHhcCCCcccChHHHHHHHHHHhcCCCCcccccCCC---CCCcccCCCCCCcEEEecC
Q 046127 238 CVARKEDNYFFALSKYQKLLEDTLTENPDFVQPSFRLNEVQGWIKSGLRDFSISRASV---DWGIPVPNDNKQTIYVWFD 314 (345)
Q Consensus 238 ve~r~~~~~f~~l~~~~~~L~e~l~~~~~~~~P~~~~~~~~~wl~~gL~D~~ISR~~~---~WGIpvP~~~~~~iyVWfd 314 (345)
++.+.++||||++++++++|.+++++.+.++.|+..++...+|+.++++||||||++. .||||||+++++++|||||
T Consensus 166 ve~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~P~~~~~~~~~~~~~~l~Dw~ISRq~~~~~~WGipiP~~~~~~~~vw~d 245 (542)
T 3u1f_A 166 VTWVSEENYMFRLSAFRERLLEWYHANPGCIVPEFRRREVIRAVEKGLPDLSVSRARATLHNWAIPVPGNPDHXVYVWLD 245 (542)
T ss_dssp EEEEEEEEEEECGGGGHHHHHHHHHHCTTSEESHHHHHHHHHHHHHCCCCEECEEEGGGGTTCSCEETTEEEEEECHHHH
T ss_pred ceeeccccceecchhHHHHHHHHHhhcccccCCchhhHhHhhhhhccccccCccccccCcCCCCCccCCCcCeeeeeeec
Confidence 9999999999999999999999999988889999999999999999999999999842 3999999999999999999
Q ss_pred chhHHHHhcCCCCC
Q 046127 315 ALLGYISALSEDRD 328 (345)
Q Consensus 315 al~gYls~~~~~~~ 328 (345)
|++||+++++.+.+
T Consensus 246 a~~~~~~~~~~~~~ 259 (542)
T 3u1f_A 246 ALTNYLTGSRLRVD 259 (542)
T ss_dssp HHTHHHHHHTEEEC
T ss_pred cchhhhhhhhcccc
Confidence 99999999987654
|
| >1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-60 Score=496.76 Aligned_cols=249 Identities=31% Similarity=0.555 Sum_probs=229.4
Q ss_pred CCEEEEccCCCCCCcCchhHHHH-HHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 046127 89 DPFVLTTPLYYVNAPPHMGSAYT-TIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTL 167 (345)
Q Consensus 89 ~~~~I~~~~PypnG~LHIGHar~-~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~ 167 (345)
++|+||+|+|||||+|||||+++ ++++|+++||+||+||+|.|++|+|+||+||+.+|++.|++|+++++++.+.|+++
T Consensus 2 ~~~~itt~~Py~nG~lHiGHa~~~~i~~DiiaRy~rm~G~~V~~v~G~D~hG~pie~~A~k~G~~p~e~~~~~~~~~~~~ 81 (722)
T 1rqg_A 2 VRYMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALKEGRSPREIVDEFHEQIKIT 81 (722)
T ss_dssp CEEEEEECCCBTTSCCBHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CCEEEecCCCCCCCchhhchhhccHHHHHHHHHHHHhcCCceEecceeCCCCHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 57999999999999999999998 99999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCcccCccccCCChhhHHHHHHHHHHHHhCCCeeecccCcccccCCCCccchhhhhc--------------------
Q 046127 168 WKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLYCVNCEEYKDEKELLE-------------------- 227 (345)
Q Consensus 168 l~~lgI~~D~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~~c~~~l~d~el~~-------------------- 227 (345)
|++|||++|.|++|+++.|.+.++++|.+|+++|+||++.+.++||+.|++||+|.++.+
T Consensus 82 ~~~lgis~D~~~rT~d~~~~~~v~~~f~~L~~kG~iY~~~~~v~y~~~~~tfl~d~~v~gtcP~c~~~~~~Gd~c~~~G~ 161 (722)
T 1rqg_A 82 FQRAKISFDFFGRTELPIHYKLSQEFFLKAYENGHLVKKVTKQAYCEHDKMFLPDRFVIGTCPYCGAEDQKGDQCEVCGR 161 (722)
T ss_dssp HHHHTCCCSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEBTTTTBCCCGGGCCSBCSSSCCSCCCTTTCSSSCC
T ss_pred HHHhCCCCCCCeeCCCHHHHHHHHHHHHHHHHCCCEEecceeeeecCCCCcCcchhhcccccCccCCccCCcchhhhccc
Confidence 999999999999999999999999999999999999999999999999999999876531
Q ss_pred --------CCcCCCCCCCceEeeccccccchhHhHHHHHHHHhcCCCcccChHHHHHHHHHHhcCCCCcccccCCCCCCc
Q 046127 228 --------NQCCPIHLKPCVARKEDNYFFALSKYQKLLEDTLTENPDFVQPSFRLNEVQGWIKSGLRDFSISRASVDWGI 299 (345)
Q Consensus 228 --------~~~c~~~~~pve~r~~~~~f~~l~~~~~~L~e~l~~~~~~~~P~~~~~~~~~wl~~gL~D~~ISR~~~~WGI 299 (345)
+++|++||++++++.++||||+|++|+++|++++++.+ ||+.+++++.+||++||+||||||+ .+||+
T Consensus 162 ~l~~~~l~~p~~~r~g~~v~~~~~~qwF~~l~~~~~~l~~~~~~~~---wp~~~~~~~~~wl~~gl~dw~ISR~-~~WG~ 237 (722)
T 1rqg_A 162 PLTPEILINPRCAICGRPISFRDSAHYYIKMQDFAERLKRWIEKQP---WKPNVKNMVLSWIEEGLEERAITRD-LNWGI 237 (722)
T ss_dssp CCCTTSSBSCBCTTTCCBCEEEEEEEEEECGGGTHHHHHHHHHSSC---CCHHHHHHHHHHHTTCCCCEECEEC-CSSSC
T ss_pred ccChhhccCCcccCCCcEeEEEEeccEEEEhHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHCCCcccceecc-ccCcc
Confidence 35788999999999999999999999999999999873 6888999999999889999999998 79999
Q ss_pred ccCC----CCCCcEEEecCchhHHHHhcCCCCCCCchhhhhhCcCC
Q 046127 300 PVPN----DNKQTIYVWFDALLGYISALSEDRDQPSLRTAVSSGWP 341 (345)
Q Consensus 300 pvP~----~~~~~iyVWfdal~gYls~~~~~~~~~~~~~~~~~~w~ 341 (345)
|||. .+++++||||||++||+++++++.+.....+.|.+|||
T Consensus 238 piP~~~~g~~~~~iyvW~da~i~y~~~~~~~~~~~g~~~~~~~~w~ 283 (722)
T 1rqg_A 238 PVPLDEEDMKGKVLYVWFEAPIGYISITIEHFKRIGKPNEWKKYWL 283 (722)
T ss_dssp BCSCCCSSSTTCEECHHHHGGGHHHHHHHHHHHHTTCTTTTHHHHB
T ss_pred ccCccccCCCCCEEEEEeccccchhhhHHHHHhhcCCchHHHhccC
Confidence 9995 78999999999999999988644321111245788998
|
| >3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-58 Score=470.79 Aligned_cols=257 Identities=25% Similarity=0.416 Sum_probs=230.3
Q ss_pred CCCCCCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHH
Q 046127 84 GTEPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQA 163 (345)
Q Consensus 84 ~~~~~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~ 163 (345)
..+++++|+|++|+|||||+|||||+|+++++|+++||+|++|++|.+++|+|+||++|+..|++.|++++++++++.+.
T Consensus 13 ~~~~~~~~~v~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~ 92 (560)
T 3h99_A 13 MTQVAKKILVTCASPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQLGITPEQMIGEMSQE 92 (560)
T ss_dssp ----CCEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCCCCcEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCeEEEeeeecCcCcHHHHHHHHhCCCHHHHHHHHHHH
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCcccCccccCCChhhHHHHHHHHHHHHhCCCeeecccCcccccCCCCccchhhhhc----------------
Q 046127 164 YKTLWKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLYCVNCEEYKDEKELLE---------------- 227 (345)
Q Consensus 164 ~~~~l~~lgI~~D~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~~c~~~l~d~el~~---------------- 227 (345)
|+++|++|||++|.|++|+++.|.+.++++|.+|.++|+||++++.+|||+.|+++|++.++.+
T Consensus 93 ~~~~~~~lgi~~d~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~~~~~~~~~l~~~~v~g~cp~c~~~~~~gd~ce 172 (560)
T 3h99_A 93 HQTDFAGFNISYDNYHSTHSEENRQLSELIYSRLKENGFIKNRTISQLYDPEKGMFLPDRFVKGTCPKCKSPDQYGDNCE 172 (560)
T ss_dssp HHHHHHHTTCCCSEEEESSSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCGGGEEEECTTTCCSSEETTBCT
T ss_pred HHHHHHHcCCCCCCceeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeEeecCccCceecchhcCCCCCCCCCcccccchhh
Confidence 9999999999999999999999999999999999999999999999999999999999987642
Q ss_pred ------------CCcCCCCCCCceEeeccccccchhHhHHHHHHHHhcCCCcccChHHHHHHHHHHhcCCCCcccccCCC
Q 046127 228 ------------NQCCPIHLKPCVARKEDNYFFALSKYQKLLEDTLTENPDFVQPSFRLNEVQGWIKSGLRDFSISRASV 295 (345)
Q Consensus 228 ------------~~~c~~~~~pve~r~~~~~f~~l~~~~~~L~e~l~~~~~~~~P~~~~~~~~~wl~~gL~D~~ISR~~~ 295 (345)
++.|.+||.+++++.++||||+|++|+++|.+++++. + +|+..++.+.+||+++++||||||++.
T Consensus 173 ~cg~~~~~~~l~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~--~-~~~~~~~~~~~~l~~~l~D~~IsR~~~ 249 (560)
T 3h99_A 173 VCGATYSPTELIEPKSVVSGATPVMRDSEHFFFDLPSFSEMLQAWTRSG--A-LQEQVANKMQEWFESGLQQWDISRDAP 249 (560)
T ss_dssp TTCCBCCGGGCEEEEETTTCCCCEEEEEEEEEECGGGGHHHHHHHHHTS--C-SCHHHHHHHHHHHHHCCCCEECEEESS
T ss_pred hccccCChhhhcCCccccCCCCceEEecceEEEEHHHHHHHHHHHHHhC--C-CCHHHHHHHHHHHhcCCCCCCccccCC
Confidence 1234455678999999999999999999999999885 4 466679999999998999999999865
Q ss_pred CCCcccCCCCCCcEEEecCchhHHHHhcCCCCCCCchhhhhhCcCCCC
Q 046127 296 DWGIPVPNDNKQTIYVWFDALLGYISALSEDRDQPSLRTAVSSGWPAS 343 (345)
Q Consensus 296 ~WGIpvP~~~~~~iyVWfdal~gYls~~~~~~~~~~~~~~~~~~w~~~ 343 (345)
+||||||++++++|||||||++||+++++.+.++......|.+|||++
T Consensus 250 ~WG~~iP~~~~~viyvW~da~~~y~s~~~~~~~~~~~~~~~~~~wp~~ 297 (560)
T 3h99_A 250 YFGFEIPNAPGKYFYVWLDAPIGLMGSFKNLCDKRGDSVSFDEYWKKD 297 (560)
T ss_dssp CSSCBCTTCTTEEECHHHHHHHHHHHHHHHHHHHHTCSSHHHHHHBTT
T ss_pred cCCeeCCCCCCceEEeCcccchhHHHHHHHHhhccCChhhHHHhCcCC
Confidence 899999999999999999999999999864432211125788999876
|
| >2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-57 Score=459.03 Aligned_cols=250 Identities=48% Similarity=0.880 Sum_probs=236.9
Q ss_pred CCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 046127 88 ADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTL 167 (345)
Q Consensus 88 ~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~ 167 (345)
+++|+|++|+|||||+|||||+|+++++|+++||+|++|++|.+++|+|+||++|+.+|++.|++++++++++.+.|+++
T Consensus 2 ~~~~~i~~p~py~~g~lHiGH~r~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~ 81 (500)
T 2d5b_A 2 EKVFYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAAGEDPKAFVDRVSGRFKRA 81 (500)
T ss_dssp CCEEEEECCCEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred CCcEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHcCCCceeeecccCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 36799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCcccCccccCCChhhHHHHHHHHHHHHhCCCeeecccCcccccCCCCccchhhhhcCCcCCCCCCCceEeeccccc
Q 046127 168 WKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLYCVNCEEYKDEKELLENQCCPIHLKPCVARKEDNYF 247 (345)
Q Consensus 168 l~~lgI~~D~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~~c~~~l~d~el~~~~~c~~~~~pve~r~~~~~f 247 (345)
|++|||++|.+++|+++.|.+.++++|.+|.++|+||++++.++||+.|++++++.++.+ +.|++|+.|++.+.++|||
T Consensus 82 ~~~lgi~~d~~~~t~~~~~~~~~~~~~~~L~~~G~iy~~~~~~~~~~~~~~~~~~~~l~~-g~c~~~~~~v~~~~~~~wf 160 (500)
T 2d5b_A 82 WDLLGIAYDDFIRTTEERHKKVVQLVLKKVYEAGDIYYGEYEGLYCVSCERFYTEKELVE-GLCPIHGRPVERRKEGNYF 160 (500)
T ss_dssp HHHTTCCCSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCTTTSBT-TBCTTTCSBCEEEEEEEEE
T ss_pred HHHhCCcCCCCcccCCHHHHHHHHHHHHHHHHCCCEEecceEEecCCCcCcccCchhccC-CcCCCCCCeeeEEecCceE
Confidence 999999999999999999999999999999999999999999999999999999999875 7899999999999999999
Q ss_pred cchhHhHHHHHHHHhcCCCcccChHHHHHHHHHHhcCCCCccccc--CCCCCCcccCCCCCCcEEEecCchhHHHHhcCC
Q 046127 248 FALSKYQKLLEDTLTENPDFVQPSFRLNEVQGWIKSGLRDFSISR--ASVDWGIPVPNDNKQTIYVWFDALLGYISALSE 325 (345)
Q Consensus 248 ~~l~~~~~~L~e~l~~~~~~~~P~~~~~~~~~wl~~gL~D~~ISR--~~~~WGIpvP~~~~~~iyVWfdal~gYls~~~~ 325 (345)
|++++|++.|.++++++++++.|+..++.+.+||+++++|||||| ++.+||+|+|.++++++||||||+++|++++++
T Consensus 161 ~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~l~~~l~Dw~iSRp~~~~~WG~piP~~~~~v~~vWfds~~~y~~~~g~ 240 (500)
T 2d5b_A 161 FRMEKYRPWLQEYIQENPDLIRPEGYRNEVLAMLAEPIGDLSISRPKSRVPWGIPLPWDENHVTFVWFDALLNYVSALDY 240 (500)
T ss_dssp ECGGGGHHHHHHHHHTCTTSEESHHHHHHHHHHHTSCCCCEECEEETTTCCSSCEETTEEEEEECHHHHHHTHHHHTTTT
T ss_pred EEcHHHHHHHHHHHHhCCCeeCCHHHHHHHHHHHhcCCCCeecccccccccCccccCCCCCCeeEEccccchhhHHHcCC
Confidence 999999999999999877778899999999999998999999999 667899999999999999999999999999887
Q ss_pred CCCCCchhhhhhCcCCCC
Q 046127 326 DRDQPSLRTAVSSGWPAS 343 (345)
Q Consensus 326 ~~~~~~~~~~~~~~w~~~ 343 (345)
+.+. + +.++||.|
T Consensus 241 ~~~~----~-~~~~~p~d 253 (500)
T 2d5b_A 241 PEGE----A-YRTFWPHA 253 (500)
T ss_dssp TTCH----H-HHHHGGGE
T ss_pred CCCc----h-HHHcCCCe
Confidence 6431 2 77788876
|
| >2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-57 Score=461.28 Aligned_cols=256 Identities=38% Similarity=0.692 Sum_probs=238.3
Q ss_pred CCCCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHH
Q 046127 86 EPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYK 165 (345)
Q Consensus 86 ~~~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~ 165 (345)
++++.++|++|+|||||+|||||+|+++++|+++||+|++|++|.+++|+|+||++|+.+|++.|++++++++++.+.|+
T Consensus 9 ~~~~~~~i~t~~P~~ng~lHiGHa~~~i~~D~l~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~ 88 (524)
T 2x1l_A 9 GGSEPFYITTAIAYPNGVPHIGHAYEYIATDAIARFKRLDGYDVRYLTGTDVHGQKMAETAAKEGIPAAELARRNSDVFQ 88 (524)
T ss_dssp --CCEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCCCEEEeeCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCceeeeCCcCcccHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCcccCccccCCChhhHHHHHHHHHHHHhCCCeeecccCcccccCCCCccchhhhhcC---CcCC-CCCCCceEe
Q 046127 166 TLWKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLYCVNCEEYKDEKELLEN---QCCP-IHLKPCVAR 241 (345)
Q Consensus 166 ~~l~~lgI~~D~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~~c~~~l~d~el~~~---~~c~-~~~~pve~r 241 (345)
+++++|||++|.|++|+++.|.+.++++|.+|+++|+||++++.+|||+.|++++++.++... ..|+ +||.|++.+
T Consensus 89 ~~~~~lgi~~d~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~v~~~~~~~t~l~~~ev~~g~~G~~c~~~~g~~v~~~ 168 (524)
T 2x1l_A 89 RLQEKLNISFDRFIRTSDADHYEASKAIWKRMADAGDIYLDAYKGWYSIRDERFFTENETTEQPDGTRIATETGAPVTWT 168 (524)
T ss_dssp HHHHHTTCCCSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEEECTTSCEEETTTCCBEEEE
T ss_pred HHHHHcCCcCCCCeecCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeccCccCccccHHHhccCCCCCccccccCCcceEE
Confidence 999999999999999999999999999999999999999999999999999999999998642 2588 999999999
Q ss_pred eccccccchhHhHHHHHHHHhcCCCcccChHHHHHHHHHHhcCCCCcccccCCCCCCcccCCCCCCcEEEecCchhHHHH
Q 046127 242 KEDNYFFALSKYQKLLEDTLTENPDFVQPSFRLNEVQGWIKSGLRDFSISRASVDWGIPVPNDNKQTIYVWFDALLGYIS 321 (345)
Q Consensus 242 ~~~~~f~~l~~~~~~L~e~l~~~~~~~~P~~~~~~~~~wl~~gL~D~~ISR~~~~WGIpvP~~~~~~iyVWfdal~gYls 321 (345)
.++||||++++|+++|.+++++++.++.|+..++.+.+|+.++++||||||++.+||+|+|.++++++|||||++++|++
T Consensus 169 ~~~qwF~~l~~~~~~l~~~~~~~~~~i~p~~~~~~~~~~~~~~l~Dw~iSRqr~~WG~~iP~~~~~~~yvWfds~~~~~~ 248 (524)
T 2x1l_A 169 EEQTYFFRLSAYTDRLLALYEEHPEFIGPDARRNEIVSFVSGGLKDLSISRTTFDWGVPVPDHPDHVMYVWVDALTNYLT 248 (524)
T ss_dssp EEEEEEECGGGSHHHHHHHHHHCGGGEESHHHHHHHHHHHTTCCCCEECEESSCCSSCEETTEEEEEECHHHHHHTHHHH
T ss_pred ecCCeEeeHHHHHHHHHHHHHhCCCeeCCHHHHHHHHHHHHcCCcccceECCCCCcCccCCCCCCCEEEEecCCchHHHH
Confidence 99999999999999999999876556889999999999998899999999997789999998889999999999999999
Q ss_pred hcCCCCCCCchhhhhhCcCCCCC
Q 046127 322 ALSEDRDQPSLRTAVSSGWPASL 344 (345)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~w~~~~ 344 (345)
+++++.+. +..+.++||.|+
T Consensus 249 ~~g~p~~~---~~~~~~~~p~di 268 (524)
T 2x1l_A 249 GVGFPDTE---SESFRRYWPADL 268 (524)
T ss_dssp TTTTTCTT---SHHHHHHCSCSE
T ss_pred HcCCCCCc---hHHHHhhCCCeE
Confidence 99886542 246888999874
|
| >2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-56 Score=450.98 Aligned_cols=236 Identities=54% Similarity=0.964 Sum_probs=196.5
Q ss_pred CCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 046127 88 ADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTL 167 (345)
Q Consensus 88 ~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~ 167 (345)
+++++|++|+|||||+|||||+|+++++|+++||+|++|++|.+++|+|+||++|+.+|++.|++|+++++++.+.|+++
T Consensus 4 ~~~~~i~~p~py~ng~lHiGH~~~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~ 83 (497)
T 2csx_A 4 MKKFYVTTPIYYVNDVPHLGHAYTTIAADTIARYYRLRDYDVFFLTGTDEHGLKIQKKAEELGISPKELVDRNAERFKKL 83 (497)
T ss_dssp SCEEEEEEEEEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHTHHHHSSSCHHHHHHHHHHHHHHH
T ss_pred CCcEEEecCCCCCCCccchhhHHHHHHHHHHHHHHHhcCCceeeecccCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCcccCccccCCChhhHHHHHHHHHHHHhCCCeeecccCcccccCCCCccchhhhhcCCcCCCCCCCceEeeccccc
Q 046127 168 WKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLYCVNCEEYKDEKELLENQCCPIHLKPCVARKEDNYF 247 (345)
Q Consensus 168 l~~lgI~~D~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~~c~~~l~d~el~~~~~c~~~~~pve~r~~~~~f 247 (345)
|++|||++|.+++|+++.|.+.++++|.+|+++|+||++++.++||+.|++++++.++.+.+.|++||.+++.+.++|||
T Consensus 84 ~~~lgi~~d~~~~t~~~~~~~~~~~~~~~L~~~G~iY~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~wf 163 (497)
T 2csx_A 84 WEFLKIEYTKFIRTTDPYHVKFVQKVFEECYKRGDIYLGEYEGWYCVGCEEFKSEAELAEDHTCPIHQKKCEYIKEPSYF 163 (497)
T ss_dssp HHHTTCCCSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEC---------------------------------CCEEEE
T ss_pred HHHhCCcCCCCccCCCHHHHHHHHHHHHHHHHCCCEEecceeeccCcccCeEccHHHhccCCCCCCCCCCCeEEecCceE
Confidence 99999999999999999999999999999999999999999999999999999999997657899999999999999999
Q ss_pred cchhHhHHHHHHHHhcCCCcccChHHHHHHHHHHhcCCCCccccc--CCCCCCcccCCCCCCcEEEecCchhHHHHhc
Q 046127 248 FALSKYQKLLEDTLTENPDFVQPSFRLNEVQGWIKSGLRDFSISR--ASVDWGIPVPNDNKQTIYVWFDALLGYISAL 323 (345)
Q Consensus 248 ~~l~~~~~~L~e~l~~~~~~~~P~~~~~~~~~wl~~gL~D~~ISR--~~~~WGIpvP~~~~~~iyVWfdal~gYls~~ 323 (345)
|+|++|+++|.+++++.+.++.|+..++.+.+|++++++|||||| ++.+||+|+|.++++++||||||+++|+|++
T Consensus 164 ~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~l~~~~~Dw~isR~~~~~~WG~~iP~~~~~~i~vW~ds~~~~~s~~ 241 (497)
T 2csx_A 164 FRLSKYQDKLLELYEKNPEFIQPDYRRNEIISFVKQGLKDLSVTRPRSRVKWGIPVPFDPEHTIYVWFDALFNYISAL 241 (497)
T ss_dssp ECTTSSHHHHHHHHHHCTTSBCSHHHHHHHHHHHHHCCCCEECEEETTTCCSSEEETTEEEEEECSHHHHHTHHHHTT
T ss_pred EEcHHHHHHHHHHHHhCCCeeCcHHHHHHHHHHHhcCCccccccccCCCCCCceecCCCCCceEEEecccchhhcccC
Confidence 999999999999999887778899889999999988999999999 6578999999888999999999999999988
|
| >1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-52 Score=440.61 Aligned_cols=251 Identities=18% Similarity=0.282 Sum_probs=224.0
Q ss_pred CCCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhC-CCCH------------
Q 046127 87 PADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADG-GSSP------------ 153 (345)
Q Consensus 87 ~~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~-g~~p------------ 153 (345)
++++|+|+.|||||||.|||||+++++++|+++||+||+|++|.+++|+|+||+||+.+|++. |.++
T Consensus 36 ~~~~f~i~~~pPy~nG~lHiGH~~~~~~~D~i~R~~rm~G~~v~~~~G~D~~Glpie~~a~k~l~~~~~~~~~~~g~~~f 115 (821)
T 1ile_A 36 GGPRYTVYEGPPTANGLPHVGHAQARSYKDLFPRYKTMRGYYAPRRAGWDTHGLPVELEVEKKLGLKSKREIEAYGIERF 115 (821)
T ss_dssp TSCBCCBCCCCCCTTSCCCTTHHHHHHHHHHHHHHHHHTTCBCCCEEEECCCHHHHHHHHHHHTTCCSHHHHHHHCHHHH
T ss_pred CCCcEEEecCCCCCCCCCchhhhHhHHHHHHHHHHHHhcCCcccccccccCCCchHHHHHHHHhcccccchHhhcCHHHH
Confidence 568999999999999999999999999999999999999999999999999999999999984 8763
Q ss_pred ----HHHHHHHHHHHHHHHhhcC--cccCccccCCChhhHHHHHHHHHHHHhCCCeeecccCcccccCCCCccchhhhhc
Q 046127 154 ----SEHCDVVSQAYKTLWKDLD--IAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLYCVNCEEYKDEKELLE 227 (345)
Q Consensus 154 ----~~~~~~~~~~~~~~l~~lg--I~~D~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~~c~~~l~d~el~~ 227 (345)
+++++++.+.++++|++|| +++|++++|+++.|++.++++|.+|+++|+||++.++++||+.|+++|+|.|+.+
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~lg~~~dwd~~~~T~d~~~~~~v~~~f~~L~~~Gliy~~~~~v~wcp~~~t~Lad~ev~~ 195 (821)
T 1ile_A 116 NQACRESVFTYEKEWEAFTERIAYWVDLEDAYATLEPTYIESIWWSLKNLFDRGLLYRDHKVVPYCPRCGTPLSSHEVAL 195 (821)
T ss_dssp HHHHHHHTTTTHHHHTTHHHHTTCCCEEEEEEETTSHHHHHHHHHHHHHHHHTTCEEEECCEEEEETTTTEECCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCeEccCCCeEECCHHHHHHHHHHHHHHHHcCCeeecCcceEecCCCCCcccHhHhhc
Confidence 4678888999999999999 6677999999999999999999999999999999999999999999999988831
Q ss_pred --------------------------------------------------------------------------------
Q 046127 228 -------------------------------------------------------------------------------- 227 (345)
Q Consensus 228 -------------------------------------------------------------------------------- 227 (345)
T Consensus 196 G~~~~~~~~~~v~f~~~~~~~~~~~~~~l~v~TTrP~Tl~g~~av~v~p~~~y~~~~~~~~~~i~a~~~~~~~~~~~~~~ 275 (821)
T 1ile_A 196 GYKEIQDPSVYVRFPLKEPKKLGLEKASLLIWTTTPWTLPGNVAAAVHPEYTYAAFQVGDEALILEEGLGRKLLGEGTQV 275 (821)
T ss_dssp TEEEEEEEEEEEEEEBSSGGGGTCSSEEEEEEESCGGGGGGCCCEEECTTSCEEEEEETTEEEEEETTHHHHHTCTTSCE
T ss_pred CcccccCceEEEEEEecCCcccCCCCCEEEEEcCCChhhhhcEEEEECCCCceeEEEcCCcEEEehHHHHHHHHhhCcEE
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 046127 228 -------------------------------------------------------------------------------- 227 (345)
Q Consensus 228 -------------------------------------------------------------------------------- 227 (345)
T Consensus 276 ~~~~~G~~l~g~~~~~p~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~id~~G~~~~~~~~ 355 (821)
T 1ile_A 276 LKTFPGKALEGLPYTPPYPQALEKGYFVVLADYVSQEDGTGIVHQAPAFGAEDLETARVYGLPLLKTVDEEGKLLVEPFK 355 (821)
T ss_dssp EEEECHHHHTTCBBCCSSCCCCSSCSBEEECTTCCSSSSCSCEECCTTSCHHHHHHHHHTTCCCCCCBCTTSBBCSGGGT
T ss_pred EEEechHHhcCCEEEcCCcccCCCEEEEEecCcCccCCCCcceEecCCCCHHHHHHHHHcCCCcceeECCCCcCcccCcC
Confidence
Q ss_pred ------------------------------CCcCCCCCCCceEeeccccccchhHhHHHHHHHHhcCCCcccChHH-HHH
Q 046127 228 ------------------------------NQCCPIHLKPCVARKEDNYFFALSKYQKLLEDTLTENPDFVQPSFR-LNE 276 (345)
Q Consensus 228 ------------------------------~~~c~~~~~pve~r~~~~~f~~l~~~~~~L~e~l~~~~~~~~P~~~-~~~ 276 (345)
.++|++|++|++++.++||||+++++++++++++++. .+.|+.. .+.
T Consensus 356 G~~~~~a~~~i~~~L~~~g~~~~~~~~~h~~p~c~r~~~~~~~~~~~qWF~~~~~~~~~~~~~~~~~--~~~P~~~~~~~ 433 (821)
T 1ile_A 356 GLYFREANRAILRDLRGRGLLFKEESYLHSYPHCWRCSTPLMYYATESWFIKNTLFKDELIRNNQEI--HWVPPHIKEGR 433 (821)
T ss_dssp TCBHHHHHHHHHHHHHHTTCEEEEEEEEEEEEBCSSSCCBCEEEECCEEEECGGGGHHHHHHHHHHS--EESSGGGTTTT
T ss_pred CCCHHHHHHHHHHHHHhCCCeeeeecccccCCEecCCCCEEEEEecchhhhchHHHHHHHHHHhcCe--EEECchhhHhH
Confidence 1359999999999999999999999999999999886 4688876 357
Q ss_pred HHHHHhcCCCCcccccCCCCCCcccCC----CC-----------------------------------------------
Q 046127 277 VQGWIKSGLRDFSISRASVDWGIPVPN----DN----------------------------------------------- 305 (345)
Q Consensus 277 ~~~wl~~gL~D~~ISR~~~~WGIpvP~----~~----------------------------------------------- 305 (345)
+.+||+ +|+||||||| .+||+|||. +.
T Consensus 434 ~~~~l~-~l~DW~ISRq-r~WG~pIP~~~~~~~~~~~vi~~~~~l~~~~~~~~~~~~~l~~~~~d~~~~~~~~g~~~~r~ 511 (821)
T 1ile_A 434 YGEWLK-NLVDWALSRN-RYWGTPLPIWVCQACGKEEAIGSFQELKARATKPLPEPFDPHRPYVDQVELACACGGTMRRV 511 (821)
T ss_dssp THHHHH-TCCCEECCBC-CSSSCBCCEEEESSSSCCEECCSHHHHHHHBSSCCCSSCCCSHHHHTTCEEECTTSSEEEEC
T ss_pred HHHHHh-CCchheeccc-CCCCCeeeEEEecCCCcEEeeCcHHHHHhhccccccchhhhccccccccccCCCCCCchhhc
Confidence 899996 7999999999 589999992 10
Q ss_pred CCcEEEecCchhHHHHhcCCCCCCCchhhhhhCcCCCCC
Q 046127 306 KQTIYVWFDALLGYISALSEDRDQPSLRTAVSSGWPASL 344 (345)
Q Consensus 306 ~~~iyVWfdal~gYls~~~~~~~~~~~~~~~~~~w~~~~ 344 (345)
.+|+|||||+.+.|++.++++.+. .+.|..+||+|+
T Consensus 512 ~dvld~WfdS~~~~~~~~~~p~~~---~~~f~~~~P~dl 547 (821)
T 1ile_A 512 PYVIDVWYDSGAMPFASLHYPFEH---EEVFRESFPADF 547 (821)
T ss_dssp SCBCCHHHHHHHHHHHTTTTTTSC---HHHHHHHSSBSB
T ss_pred ccccceecccccchHhhcCCCccc---hHHHhhcCCccc
Confidence 158999999999999988876432 356888999875
|
| >1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-50 Score=429.98 Aligned_cols=264 Identities=21% Similarity=0.316 Sum_probs=225.7
Q ss_pred ccccCCCCCCC-CCCCCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHh----
Q 046127 74 CSYATNTDKSG-TEPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAAD---- 148 (345)
Q Consensus 74 ~~~~~~~~~~~-~~~~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~---- 148 (345)
.|.. +.|... ..++++|+|++|||||||.|||||+++++++|+++||+||+|++|.+++|+|+||++++.++++
T Consensus 19 ~W~~-~~f~~~~~~~~~~f~i~~ppPy~nG~lHiGHa~~~~l~Dii~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek~l~~ 97 (862)
T 1gax_A 19 KWAK-NPFVANPKSGKPPFVIFMPPPNVTGSLHMGHALDNSLQDALIRYKRMRGFEAVWLPGTDHAGIATQVVVERLLLK 97 (862)
T ss_dssp HHHH-SCCCCCTTCCSCEEEEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTSEEEEECEEBCCTHHHHHHHHTTTTT
T ss_pred HHHh-CCCccCcCCCCCcEEEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHhCCCccccccccCCCCcHHHHHHHHHHHH
Confidence 3555 566432 3457899999999999999999999999999999999999999999999999999999999874
Q ss_pred CCCCHH------------HHHHHHHHHHHHHHhhcCcccC--ccccCCChhhHHHHHHHHHHHHhCCCeeecccCccccc
Q 046127 149 GGSSPS------------EHCDVVSQAYKTLWKDLDIAYD--KFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLYCV 214 (345)
Q Consensus 149 ~g~~p~------------~~~~~~~~~~~~~l~~lgI~~D--~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~ 214 (345)
.|++++ ++++++.+.|+++|++||+++| +.+.|+++.|.+.++++|.+|+++|+||++.+.++||+
T Consensus 98 ~g~~~~~~~~~~f~~~~~~~~~~~~~~~~~q~~rlG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~kGliYrg~~~v~wcp 177 (862)
T 1gax_A 98 EGKTRHDLGREKFLERVWQWKEESGGTILKQLKRLGASADWSREAFTMDEKRSRAVRYAFSRYYHEGLAYRAPRLVNWCP 177 (862)
T ss_dssp TTSCCSCCCTTHHHHHHHHHHHHHHHHHHHHHHHTTCCCCGGGCEETTSHHHHHHHHHHHHHHHTTSSEEEECCEEEEET
T ss_pred cCCChHHcCHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCCCcccCCHHHHHHHHHHHHHHHHCCCEEecccccccCC
Confidence 465543 6789999999999999999998 34459999999999999999999999999999999999
Q ss_pred CCCCccchhhhh--------------------------------------------------------------------
Q 046127 215 NCEEYKDEKELL-------------------------------------------------------------------- 226 (345)
Q Consensus 215 ~c~~~l~d~el~-------------------------------------------------------------------- 226 (345)
.|+++|+|.|+.
T Consensus 178 ~~~T~Lsd~EV~~~e~~g~~~~v~f~~~~~~~l~v~TTrPeTl~g~~avav~P~~~ry~~l~G~~~~~P~~~~~ipii~~ 257 (862)
T 1gax_A 178 RCETTLSDLEVETEPTPGKLYTLRYEVEGGGFIEIATVRPETVFADQAIAVHPEDERYRHLLGKRARIPLTEVWIPILAD 257 (862)
T ss_dssp TTTEEECGGGEEECCEEEEEEEEECCCSSSCCCEEEESCSGGGTTCCCEEECSSCCTTCSCTTCCCBCTTCCCBCCEEEC
T ss_pred CcCccccccccccccccceEEEEEEEecCCCEEEEEeCCccccccceEEEECCCccHHHHHcCCEEECCCCCCeeeEEec
Confidence 999999987642
Q ss_pred -------------------------------------------------c------------------------------
Q 046127 227 -------------------------------------------------E------------------------------ 227 (345)
Q Consensus 227 -------------------------------------------------~------------------------------ 227 (345)
+
T Consensus 258 ~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~~id~~G~~~~~~~~g~~~Gl~~~~a~~~iv~~L~~~g~l~~~~~~ 337 (862)
T 1gax_A 258 PAVEKDFGTGALKVTPAHDPLDYEIGERHGLKPVSVINLEGRMEGERVPEALRGLDRFEARRKAVELFREAGHLVKEEDY 337 (862)
T ss_dssp TTCCTTSSSSEEECCGGGCHHHHHHHHHTTCCCCCSBCTTSBBCSSSSCTTTSSSBSSHHHHHHHHHHHTTTCEEEEEEE
T ss_pred cccccCCCCcceEecCCCCchHHHHHHHcCCCccceeCCCCccccccCCcccCCcCHHHHHHHHHHHHHhCCCeeeeccc
Confidence 0
Q ss_pred ---CCcCCCCCCCceEeeccccccchhHhHHHHHHHHhcCCCcccChHHHHHHHHHHhcCCCCcccccCCCCCCcccCC-
Q 046127 228 ---NQCCPIHLKPCVARKEDNYFFALSKYQKLLEDTLTENPDFVQPSFRLNEVQGWIKSGLRDFSISRASVDWGIPVPN- 303 (345)
Q Consensus 228 ---~~~c~~~~~pve~r~~~~~f~~l~~~~~~L~e~l~~~~~~~~P~~~~~~~~~wl~~gL~D~~ISR~~~~WGIpvP~- 303 (345)
.++|++|++|++.+.++|||++++++++++.++++++...+.|+..++.+.+||+ +|+||||||| .+||+|||.
T Consensus 338 ~h~~p~c~R~~~~i~~~~~~qWFv~~~~~~~~~l~~v~~~~~~~~P~~~~~~~~~wl~-~l~DW~ISRq-r~WG~pIP~w 415 (862)
T 1gax_A 338 TIALATCSRCGTPIEYAIFPQWWLRMRPLAEEVLKGLRRGDIAFVPERWKKVNMDWLE-NVKDWNISRQ-LWWGHQIPAW 415 (862)
T ss_dssp EECCEEETTTCSBCCEEECCEEEECHHHHHHHHHHHHHHTCCEESSSHHHHHHHHHHH-TCCCCCCBCC-CSSSCCCCCE
T ss_pred cccCCeecCCCCeEEEEecceEEEEhHHHHHHHHHHHHcCCceEcCHHHHHHHHHHHh-cccceeEecc-cCCCcccCce
Confidence 1358999999999999999999999999999999765556899999999999996 6999999999 699999994
Q ss_pred --CCCCcEEE------------------------------ecCchhHHHHhcCCCCCCCchhhhhhCcCCCCC
Q 046127 304 --DNKQTIYV------------------------------WFDALLGYISALSEDRDQPSLRTAVSSGWPASL 344 (345)
Q Consensus 304 --~~~~~iyV------------------------------Wfdal~gYls~~~~~~~~~~~~~~~~~~w~~~~ 344 (345)
++++++|| |||+.+.|++.++++.+. +++..|||+|+
T Consensus 416 ~~~~~~~i~v~~~~~l~~~~~~~~~~g~~~~~r~~DvlDtWfdS~~~~~~~~~~p~~~----~~~~~~~P~d~ 484 (862)
T 1gax_A 416 YCEDCQAVNVPRPERYLEDPTSCEACGSPRLKRDEDVFDTWFSSALWPLSTLGWPEET----EDLKAFYPGDV 484 (862)
T ss_dssp EETTTCCEECCCGGGTTCCCCSCTTTCCSCEEECCCCBCHHHHHTSCTTGGGTTTSCC----HHHHHSCSBSC
T ss_pred ecCCCCEEEEeccccccccchhhhhcCchheecCCcccceeeccCCcchhhccCCCch----HHHHhhCCceE
Confidence 23344554 556667788877776442 57888999885
|
| >1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-49 Score=423.53 Aligned_cols=233 Identities=22% Similarity=0.332 Sum_probs=212.9
Q ss_pred CCCCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCH------------
Q 046127 86 EPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSP------------ 153 (345)
Q Consensus 86 ~~~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p------------ 153 (345)
.++++|+|++|||||||.|||||+++++++|+++||+||+|++|.+++|||+||+||+.+|++.|+++
T Consensus 45 ~~~~~f~i~~~pPY~nG~lHiGHa~n~~~~Dii~Ry~rm~G~~v~~~~GwD~hGlpiE~~a~k~G~~~~~~~~~~f~~~~ 124 (917)
T 1ffy_A 45 KGNETFILHDGPPYANGNLHMGHALNKILKDFIVRYKTMQGFYAPYVPGWDTHGLPIEQALTKKGVDRKKMSTAEFREKC 124 (917)
T ss_dssp TTSCBCCEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTCBCCCCCEEBCCSHHHHHHHHHHTCCSTTTCHHHHHHHH
T ss_pred cCCCceeeCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhCCCCCCCcccCchhhHHHHHHHHHcCCCchhCCHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999998875
Q ss_pred HHHHHHHHHHHHHHHhhcCccc--CccccCCChhhHHHHHHHHHHHHhCCCeeecccCcccccCCCCccchhhhh-----
Q 046127 154 SEHCDVVSQAYKTLWKDLDIAY--DKFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLYCVNCEEYKDEKELL----- 226 (345)
Q Consensus 154 ~~~~~~~~~~~~~~l~~lgI~~--D~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~~c~~~l~d~el~----- 226 (345)
+++++++.+.++++|++||+++ |++++|+++.|.+.++++|.+|+++|+||++.++++||+.|+++|++.|+.
T Consensus 125 ~~~~~~~~~~~~~~~~rlG~~~Dwd~~~~T~d~~~~~~v~~~F~~l~~kGliYr~~~~v~wcp~~~T~Lae~eVey~d~~ 204 (917)
T 1ffy_A 125 KEFALEQIELQKKDFRRLGVRGDFNDPYITLKPEYEAAQIRIFGEMADKGLIYKGKKPVYWSPSSESSLAEAEIEYHDKR 204 (917)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCSCTTSCEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHhCeEEccCCCeEcCCHHHHHHHHHHHHHHHHcCCeEecccceeccCCCCcCcchhhhhccccc
Confidence 5788999999999999999975 589999999999999999999999999999999999999999999987763
Q ss_pred -----------------------------------------------------c--------------------------
Q 046127 227 -----------------------------------------------------E-------------------------- 227 (345)
Q Consensus 227 -----------------------------------------------------~-------------------------- 227 (345)
+
T Consensus 205 ~~~~~v~f~~~~~~g~~~~~~~~~i~TTrP~Tl~~~~av~v~p~~~Y~~v~~~~~~~i~a~~~~~~~~~~~~~~~~~~~~ 284 (917)
T 1ffy_A 205 SASIYVAFNVKDDKGVVDADAKFIIWTTTPWTIPSNVAITVHPELKYGQYNVNGEKYIIAEALSDAVAEALDWDKASIKL 284 (917)
T ss_dssp EEEEECCBCCCSSTTGGGTTCCBCCEESCGGGSSCCBCCCCCTTCCCCCCCTTTTCCCCCHHHHHHHHTTTTCCSSCCCC
T ss_pred CceEEEEEEecccccccCCCCeEEEEeCCcchhhhceEEEECCCCceEEEEeCCceeehHHHHHHHHHHhcCcccceeee
Confidence 0
Q ss_pred --------------------------------------------------------------------------------
Q 046127 228 -------------------------------------------------------------------------------- 227 (345)
Q Consensus 228 -------------------------------------------------------------------------------- 227 (345)
T Consensus 285 ~~~~~G~~l~g~~~~~P~~~~~~pvi~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~L~~~~~vd~~G~~~~~~~~~~G 364 (917)
T 1ffy_A 285 EKEYTGKELEWVVAQHPFLDRESLVINGDHVTTDAGTGCVHTAPGHGEDDYIVGQQYELPVISPIDDKGVFTEEGGQFEG 364 (917)
T ss_dssp CCCCCTTTCTTCCCBCCTTCCSBCCCCCCSSCCSSSCSCCCBCTTSCSHHHHTTTSSSCCCCCCCCSSSCCCTTCSSCSS
T ss_pred eeeeecccccCCEEECCCCCCeeeEEeccccccCCCCceeEeCCCCCHHHHHHHHHcCCCeeeeECCCceeCCcccccCC
Confidence
Q ss_pred -----------------------------CCcCCCCCCCceEeeccccccchhHhHHHHHHHHhcCCCcccChHHHHHHH
Q 046127 228 -----------------------------NQCCPIHLKPCVARKEDNYFFALSKYQKLLEDTLTENPDFVQPSFRLNEVQ 278 (345)
Q Consensus 228 -----------------------------~~~c~~~~~pve~r~~~~~f~~l~~~~~~L~e~l~~~~~~~~P~~~~~~~~ 278 (345)
.++|++|++|+++|.++|||++++++++++++.+++. .+.|+..++++.
T Consensus 365 ~~v~~A~~~Ii~~L~~~g~l~~~~~~~hs~p~c~R~~~pv~~r~t~QWFi~~~~lr~~~l~~i~~~--~~~P~~~~~r~~ 442 (917)
T 1ffy_A 365 MFYDKANKAVTDLLTEKGALLKLDFITHSYPHDWRTKKPVIFRATPQWFASISKVRQDILDAIENT--NFKVNWGKTRIY 442 (917)
T ss_dssp SCSSHHHHTTGGGSSHHHHCCCCEEEEEEEEEETTTCCBCEEEEEEEEEECHHHHHHHHHHHHHTS--EESSHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCccccccccccCCEecCCCCEEEEEeccceEeeHHHHHHHHHHHHhcC--cccCHHHHHHHH
Confidence 1358899999999999999999999999999999975 468999999999
Q ss_pred HHHhcCCCCcccccCCCCCCcccCC---CCCC------------------cEEEecCchhHHHHh
Q 046127 279 GWIKSGLRDFSISRASVDWGIPVPN---DNKQ------------------TIYVWFDALLGYISA 322 (345)
Q Consensus 279 ~wl~~gL~D~~ISR~~~~WGIpvP~---~~~~------------------~iyVWfdal~gYls~ 322 (345)
+||++ ++||||||| .+||+|||. ++++ .+|+|||+..+|+..
T Consensus 443 ~~l~~-~~DW~ISRq-r~WG~PIP~~~~~~g~~~~~~~~~~~i~~~~~~~g~~~W~~~~~~~~~~ 505 (917)
T 1ffy_A 443 NMVRD-RGEWVISRQ-RVWGVPLPVFYAENGEIIMTKETVNHVADLFAEHGSNIWFEREAKDLLP 505 (917)
T ss_dssp HHHHH-CCCEECEES-CSSSCBCCCEECTTSCEECCHHHHHHHHHHHHHHCTHHHHHSCHHHHSS
T ss_pred HHHhc-Cccceeecc-CCcCcccceeeCCCCCEecCHHHHHHHHHHhhhcCCcccccCCHHHhcc
Confidence 99985 999999999 599999995 3354 348999999998874
|
| >2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-46 Score=401.74 Aligned_cols=203 Identities=20% Similarity=0.266 Sum_probs=180.9
Q ss_pred cccCCCCCCC--CCCCCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCC
Q 046127 75 SYATNTDKSG--TEPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSS 152 (345)
Q Consensus 75 ~~~~~~~~~~--~~~~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~ 152 (345)
|...+.|... ..++++|+|+++||||||.|||||+++++++|+++||+||+||+|.+++|+|+||+||+.+|++.|++
T Consensus 17 W~~~~~f~~~~~~~~~~k~~v~~~~Py~nG~lHiGHa~~~~~~Dvl~Ry~rm~G~~V~~~~G~D~~Glpie~~a~k~g~~ 96 (878)
T 2v0c_A 17 WEEKGFMKAKDLPGGRGKQYVLVMFPYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHPMGWDAFGLPAENAALKFGVH 96 (878)
T ss_dssp HHHHTTTCCCSCCC---EEEEEECCCCCSSCCBHHHHHHHHHHHHHHHHHHHHTCEEECCCCBCCSSHHHHHHHHHTTCC
T ss_pred HHHcCCcccCcccCCCCCEEEECCCCCCCCCcchhhhHHHHHHHHHHHHHHhcCCceEeecccCcccHHHHHHHHHcCCC
Confidence 4444555322 23467899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCcccC--ccccCCChhhHHHHHHHHHHHHhCCCeeecccCcccccCCCCccchhhhhcCCc
Q 046127 153 PSEHCDVVSQAYKTLWKDLDIAYD--KFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLYCVNCEEYKDEKELLENQC 230 (345)
Q Consensus 153 p~~~~~~~~~~~~~~l~~lgI~~D--~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~~c~~~l~d~el~~~~~ 230 (345)
|.++++++.+.|+++|++|||++| ++++|+++.|.+.++++|.+|+++|+||++.+.++||+.|+++|++.|+++ +.
T Consensus 97 ~~~~~~~~~~~~~~~~~~LGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliY~~~~~v~w~p~~~t~La~~ev~~-g~ 175 (878)
T 2v0c_A 97 PKDWTYANIRQAKESLRLMGILYDWDREVTTCEPEYYRWNQWIFLKMWEKGLAYRAKGLVNWCPKCQTVLANEQVVE-GR 175 (878)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCCGGGCCBTTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEET-TE
T ss_pred HHHHHHHHHHHHHHHHHHhCCccCcCCCeecCCHHHHHHHHHHHHHHHHCCCEEEcceeEEEeCCCCCCcCHHHHhc-CC
Confidence 999999999999999999999998 788999999999999999999999999999999999999999999999974 78
Q ss_pred CCC-CCCCceEeeccccccchhHhHHHHHHHHhcCCCcccChHHHHHHHHHH
Q 046127 231 CPI-HLKPCVARKEDNYFFALSKYQKLLEDTLTENPDFVQPSFRLNEVQGWI 281 (345)
Q Consensus 231 c~~-~~~pve~r~~~~~f~~l~~~~~~L~e~l~~~~~~~~P~~~~~~~~~wl 281 (345)
|++ |+.+++.++++||||+|++|+++|.++++..+ ||+.+++++.+||
T Consensus 176 ~~~~~~~~~~~~~~~~~f~~l~~~~~~L~~~l~~~~---~p~~~~~~~~~wi 224 (878)
T 2v0c_A 176 CWRHEDTPVEKRELEQWYLRITAYAERLLKDLEGLN---WPEKVKAMQRAWI 224 (878)
T ss_dssp ESSCTTCBCEEEEEEEEEECGGGGHHHHHHTTTTCB---SCHHHHHHHHHHH
T ss_pred CcccCCCceEEEecceeeEecchhHHHHHHHhhhcC---CCHHHHHHHHHHh
Confidence 999 99999999999999999999999999886542 4555555555544
|
| >1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-45 Score=392.69 Aligned_cols=137 Identities=21% Similarity=0.239 Sum_probs=128.1
Q ss_pred CCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhC------------------
Q 046127 88 ADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADG------------------ 149 (345)
Q Consensus 88 ~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~------------------ 149 (345)
+++|+|++|||||||+|||||+++++++|+++||+||+||+|.+++|+|+||+||+..|++.
T Consensus 33 ~~~~~i~~~~Py~nG~lHiGH~~~~~~~D~i~R~~rm~G~~V~~~~G~D~~G~pie~~a~~~~~~~~~~~~~~~~~~g~~ 112 (810)
T 1wkb_A 33 EKKFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWHITGSPIVGIAERIKNRDPKTIWIYRDVYKVP 112 (810)
T ss_dssp GGEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHHTCEEECCCCBBCCBSHHHHHHHHHHTTCHHHHHHHHHTSCCC
T ss_pred CCcEEEEeCCCCCCCCCccccchhHHHHHHHHHHHHcCCCccCcCCccCCCCChHHHHHHHhcccCchHHHHHHHHhCCC
Confidence 67899999999999999999999999999999999999999999999999999999887631
Q ss_pred ------CCCHHHHHHHHHHHHHHHHhhcCcccC--ccccCCC--hhhHHHHHHHHHHHHhCCCeeecccCcccccCCCCc
Q 046127 150 ------GSSPSEHCDVVSQAYKTLWKDLDIAYD--KFIRTTE--PKHEAIVKEFYSSVLANGDIYKADYEGLYCVNCEEY 219 (345)
Q Consensus 150 ------g~~p~~~~~~~~~~~~~~l~~lgI~~D--~f~~T~~--~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~~c~~~ 219 (345)
+..++++++++.+.|+++|++|||++| .++.|++ +.|.+.++++|.+|+++|+||++.++++||+.|+++
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lgi~~Dw~~~~~T~d~~~~~~~~v~~~f~~L~~~Gliy~~~~~v~~~~~~~t~ 192 (810)
T 1wkb_A 113 EEILWTFEDPINIVKYFMKAAKETFIRAGFSVDWSREFYTTSLFPPFSKFIEWQFWKLKEKGYIVKGAHRVRWDPVVGTP 192 (810)
T ss_dssp HHHHHGGGSHHHHHHHHHHHHHHHHHHTTCCCCGGGCCBCSTTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCeEEecCCceEecCCchHHHHHHHHHHHHHHHCCCEEECCeeeeccCCcCCC
Confidence 246888999999999999999999998 6778999 999999999999999999999999999999999998
Q ss_pred cchhh
Q 046127 220 KDEKE 224 (345)
Q Consensus 220 l~d~e 224 (345)
|++.|
T Consensus 193 La~~e 197 (810)
T 1wkb_A 193 LGDHD 197 (810)
T ss_dssp CCTTC
T ss_pred ccHHH
Confidence 87764
|
| >1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-44 Score=390.52 Aligned_cols=136 Identities=21% Similarity=0.250 Sum_probs=127.1
Q ss_pred CCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhC---------------C---
Q 046127 89 DPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADG---------------G--- 150 (345)
Q Consensus 89 ~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~---------------g--- 150 (345)
++|+|+.|||||||.|||||+++++++|+++||+||+|++|.+++|||+||+||+..|++. |
T Consensus 34 ~kf~i~~~pPy~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~Vl~~~GwD~~GlPie~~a~~~~~~~~~~~~~~~~~~gi~~ 113 (967)
T 1wz2_A 34 KKFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWHITGSPIVGIAERIKNRDPKTIWIYRDVYKVPE 113 (967)
T ss_dssp GCCBEEECCCBCSSCCBHHHHHHHHHHHHHHHHHHHTTCCCBCCCCBBCCSSHHHHHHHHHHTTCHHHHHHHHTTSCCCH
T ss_pred CcEEEEeCCCCCCCCcchhhhHHHHHHHHHHHHHHcCCCccCCCCcCCCCCcHHHHHHHHhhccchhHHHHHHHhcCCCH
Confidence 7899999999999999999999999999999999999999999999999999999887642 3
Q ss_pred ------CCHHHHHHHHHHHHHHHHhhcCcccC--ccccCCC--hhhHHHHHHHHHHHHhCCCeeecccCcccccCCCCcc
Q 046127 151 ------SSPSEHCDVVSQAYKTLWKDLDIAYD--KFIRTTE--PKHEAIVKEFYSSVLANGDIYKADYEGLYCVNCEEYK 220 (345)
Q Consensus 151 ------~~p~~~~~~~~~~~~~~l~~lgI~~D--~f~~T~~--~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~~c~~~l 220 (345)
.+++++++++.+.++++|++||+++| +.+.|++ +.|.+.++++|.+|+++|+||++.++++|||.|+|+|
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~Dw~r~~~T~d~np~y~~~v~~~F~~L~~kGliyr~~~~v~wcp~~~T~L 193 (967)
T 1wz2_A 114 EILWTFEDPINIVKYFMKAAKETFIRAGFSVDWSREFYTTSLFPPFSKFIEWQFWKLKEKGYIVKGAHRVRWDPVVGTPL 193 (967)
T ss_dssp HHHHGGGSHHHHHHHHHHHHHHHHHTTTCCCCTTSCCBCSTTSHHHHHHHHHHHHHTTTTTCEEECCCCCEECTTTSCBC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCceEecCCCeEECCCChhHHHHHHHHHHHHHHCCCEEEeceEecccCCCCCCc
Confidence 36788999999999999999999988 6788999 9999999999999999999999999999999999988
Q ss_pred chhh
Q 046127 221 DEKE 224 (345)
Q Consensus 221 ~d~e 224 (345)
+|+|
T Consensus 194 ad~E 197 (967)
T 1wz2_A 194 GDHD 197 (967)
T ss_dssp CSSS
T ss_pred chhh
Confidence 7653
|
| >4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-43 Score=371.24 Aligned_cols=206 Identities=22% Similarity=0.314 Sum_probs=164.7
Q ss_pred ccccCCCCCCC-CCCCCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCC
Q 046127 74 CSYATNTDKSG-TEPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSS 152 (345)
Q Consensus 74 ~~~~~~~~~~~-~~~~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~ 152 (345)
.|...+.|... ..++++|+|++++|||||+|||||+++++++|+++||+||+||+|.+++|+|+||+||+..|++.|++
T Consensus 37 ~W~~~~~f~~~~~~~~~~~~v~~~~PypnG~lHiGHa~~~~~~DvlaRy~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~ 116 (880)
T 4arc_A 37 HWDEKRTFEVTEDESKEKYYCLSMLPYPSGRLHMGHVRNYTIGDVIARYQRMLGKNVLQPIGWDAFGLPAEGAAVKNNTA 116 (880)
T ss_dssp HHHHTTTTCCCCCTTSCEEEEEECCCCCCSSCCHHHHHHHHHHHHHHHHHHHTTCEEECCCEECCCSTHHHHHHHHTTSC
T ss_pred HHHhcCCcccCCcCCCCCEEEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHHcCCceEEecCccccCcHHHHHHHHcCCC
Confidence 35666666432 34678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCcccC--ccccCCChhhHHHHHHHHHHHHhCCCeeecccCcccccCCCCccchhhhhcCCc
Q 046127 153 PSEHCDVVSQAYKTLWKDLDIAYD--KFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLYCVNCEEYKDEKELLENQC 230 (345)
Q Consensus 153 p~~~~~~~~~~~~~~l~~lgI~~D--~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~~c~~~l~d~el~~~~~ 230 (345)
|+++++++.+.|+++|++||+++| ++++|+++.|.+.++++|.+|+++|+||++++.++||+.|+++|++.|+++ ++
T Consensus 117 p~~~~~~~i~~~~~~l~~LGis~Dw~~~~~T~d~~~~~~v~~~f~~L~ekGliY~~~~~v~wcp~~~t~La~~ev~~-g~ 195 (880)
T 4arc_A 117 PAPWTYDNIAYMKNQLKMLGFGYDWSRELATCTPEYYRWEQKFFTELYKKGLVYKKTSAVNWCPNDQTVLANEQVID-GC 195 (880)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCCGGGCEETTSHHHHHHHHHHHHHHHHTTCEEEEEECC--------------------
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcCCCCCEEcCCHHHHHHHHHHHHHHHHCCCEEEeceeEeecCCcCCEecchhhhc-Cc
Confidence 999999999999999999999998 889999999999999999999999999999999999999999999999985 89
Q ss_pred CCCCCCCceEeeccccccchhHhHHHHHHHHhcCCCcccChHHHHHHHHHHh
Q 046127 231 CPIHLKPCVARKEDNYFFALSKYQKLLEDTLTENPDFVQPSFRLNEVQGWIK 282 (345)
Q Consensus 231 c~~~~~pve~r~~~~~f~~l~~~~~~L~e~l~~~~~~~~P~~~~~~~~~wl~ 282 (345)
|++||.+||.++++||||+|++|+++|+++++..+ -||+.++++++|||.
T Consensus 196 ~~~~g~~ve~~~~~~~f~~i~~y~~~Ll~~l~~~~--~wp~~v~~~~~~wig 245 (880)
T 4arc_A 196 CWRCDTKVERKEIPQWFIKITAYADELLNDLDKLD--HWPDTVKTMQRNWIG 245 (880)
T ss_dssp -----------CEEEEEECGGGGHHHHHHHGGGCT--TSCHHHHHHHHHHHC
T ss_pred CcCCCCccEEEEccceEEeechhHHHHHHHHhhcc--cccHHHHHHHHhhhc
Confidence 99999999999999999999999999999999875 389999999999994
|
| >2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A | Back alignment and structure |
|---|
Probab=99.96 E-value=8.9e-31 Score=271.37 Aligned_cols=275 Identities=16% Similarity=0.137 Sum_probs=197.4
Q ss_pred cchHHHHHH----HHHHHhhchhc--chhhcccccccccccccccccccccccc-cccccccccccCCCCCCCC-CCCCC
Q 046127 19 LSLQKEFEE----MAARINYSIQN--SLWLLNPLHSKATTHFRNRLKFRQNLFS-LSKGAVFCSYATNTDKSGT-EPADP 90 (345)
Q Consensus 19 ~~~~k~~~~----~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~ 90 (345)
..|||.+++ ||++|+..+.. ...| +.++...|+|||.+++.+ .......-+.....++..+ ..+++
T Consensus 47 ~~lak~~~~~P~~iA~~i~~~l~~~~~~~i------~~vevagGfiN~~l~~~~~~~~~~~~i~~~~~~yG~~~~~~~~~ 120 (629)
T 2zue_A 47 FKLAKLLKRPPIEIAEKIVEKLKLNLPEGI------KDVKAVNGYINVFIDYPHFARILINDILAKGDRFGSSEIGKGKK 120 (629)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHTTSCCTTE------EEEEEETTEEEEEECHHHHHHHHHHHHHHHGGGTTCCCTTTTCE
T ss_pred HHHHHHcCCCHHHHHHHHHHHhhhccCCCe------EEEEEcCCEEEEEECHHHHHHHHHHHHHhcchhcCCCccCCCCE
Confidence 468888866 99999999975 5555 667777899999999862 3332222234445554333 56789
Q ss_pred EEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHH---------------------------
Q 046127 91 FVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIA--------------------------- 143 (345)
Q Consensus 91 ~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~--------------------------- 143 (345)
++|..++|||||++||||+|+++++|+++|++++.||+|.++.+++|+|.++.
T Consensus 121 V~ve~~spN~~~~~HiGH~Rs~iigD~laR~l~~~G~~V~~~~~i~D~G~Q~~~l~~~~~~~g~~~~~~~~~~~~~~~~~ 200 (629)
T 2zue_A 121 VIVEHTSVNPTKPLHMGHARNAILGDVMARILRFLGYEVEVQNYIDDLGIQFAQVYWGYLRLKEEFERIMNELRERGLKD 200 (629)
T ss_dssp EEEECCCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECTTSHHHHHHHHHHHHCHHHHHHHHHHHHHHTSCS
T ss_pred EEEEeeCCCCCCCCccchhHHHHHHHHHHHHHHHcCCCceEEecccchhHHHHHHHHHHHHhCCcchhhhhhhccccccc
Confidence 99999999999999999999999999999999999999999999999887642
Q ss_pred ------------HHHHhCCCCH--------------------HHHHHHHHHHHHHHHhhcCcccCccccCCChhhHHHHH
Q 046127 144 ------------AAAADGGSSP--------------------SEHCDVVSQAYKTLWKDLDIAYDKFIRTTEPKHEAIVK 191 (345)
Q Consensus 144 ------------~~A~~~g~~p--------------------~~~~~~~~~~~~~~l~~lgI~~D~f~~T~~~~~~~~v~ 191 (345)
..+++.+.+| +++++.+.+.|++++++|||++|.|.+|++..|...++
T Consensus 201 ~~~d~~~g~~y~~~a~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~~~~~~~~f~~~~~~L~I~~D~~~~es~~~~~~~v~ 280 (629)
T 2zue_A 201 NPIDHALGLLYVEVNRRLEDNPELENEIRDIMKKLESGELYGRKLAEEVVRAQMVTTYKLGVKYDLLVWESDIVRRKLFE 280 (629)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHHTCCCSEEEEHHHHHHTTHHH
T ss_pred CcchhhHHHHHHHHHHHHhcCchHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHcCCccccccCcCccccchhHH
Confidence 2223222233 78899999999999999999999999998777789999
Q ss_pred HHHHHHHhCCCee---ecccCcccccCCCCccchhhhhcCCcCCCCCCCceEeec--cccccchhHhHHHHHHHHhcCCC
Q 046127 192 EFYSSVLANGDIY---KADYEGLYCVNCEEYKDEKELLENQCCPIHLKPCVARKE--DNYFFALSKYQKLLEDTLTENPD 266 (345)
Q Consensus 192 ~~~~~L~~kG~iy---~~~~~~~yc~~c~~~l~d~el~~~~~c~~~~~pve~r~~--~~~f~~l~~~~~~L~e~l~~~~~ 266 (345)
+++++|.++|++| +++..+++|..|+.+..+.++ +..++.++. ..||.+--.|..+-...+. ++
T Consensus 281 ~vi~~L~~kG~~y~~~~ge~~Ga~~v~~~~~g~~~~~---------~~~v~~ksdG~~~Y~~~Diay~~~K~~ll~--~~ 349 (629)
T 2zue_A 281 IALELLSKNENFYIPSDGKYRGAFVMDLRKLFPDMKN---------PILVLRRSDGTATYTGKDIAYHLWKFGKID--VD 349 (629)
T ss_dssp HHHHHHHTSTTEECCSSSTTTTCEEEECTTTCSSSSC---------CEEEEECTTSCBCHHHHHHHHHHHHTTCSC--CC
T ss_pred HHHHHHHHCCCccccccCCcCCcEEEECcccCCcccc---------CceEEEecCCccccchhhHHHHHHHhhccc--cc
Confidence 9999999999999 456778899999888654432 111222222 2355442222222000111 12
Q ss_pred cccChHHHHHHHHHHhcCCCCcccccCCCCCCcccCC---CCCCcEEEe-------cCchhHHHHhcCC
Q 046127 267 FVQPSFRLNEVQGWIKSGLRDFSISRASVDWGIPVPN---DNKQTIYVW-------FDALLGYISALSE 325 (345)
Q Consensus 267 ~~~P~~~~~~~~~wl~~gL~D~~ISR~~~~WGIpvP~---~~~~~iyVW-------fdal~gYls~~~~ 325 (345)
+..++. -+|.++|. .||+++|+ +.+++|||| |+.+..++.++++
T Consensus 350 fr~~~~------------~~~~~~~~---~wG~~~Pg~~~~~d~~IyV~g~~q~~~~~~l~~~l~~lG~ 403 (629)
T 2zue_A 350 LLYKEW------------DSTTWTTA---PDGKSMPNKFGNANIVINVIGAEQKHPQLAIKYALQLLGF 403 (629)
T ss_dssp CEEEEC------------SSSCEEEE---EEEEECTTSSCCCSEEEEEEEGGGHHHHHHHHHHHHHTTC
T ss_pred ccCCcc------------cccccccC---CCCCCCCCccCCCCcEEEEEeCcHhhHHHHHHHHHHHcCC
Confidence 211110 02333544 79999994 689999999 7778888877765
|
| >1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=6.4e-29 Score=256.20 Aligned_cols=265 Identities=14% Similarity=0.142 Sum_probs=186.2
Q ss_pred cchHHHHHH----HHHHHhhchhcchhhcccccccccccccccccccccccc-cccccccccccCCCCCCCCCCCCCEEE
Q 046127 19 LSLQKEFEE----MAARINYSIQNSLWLLNPLHSKATTHFRNRLKFRQNLFS-LSKGAVFCSYATNTDKSGTEPADPFVL 93 (345)
Q Consensus 19 ~~~~k~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~I 93 (345)
..|||.+++ ||++|+.+++....| +.++...|++||.+++.+ .......-......++ +++|
T Consensus 41 ~~lak~~~~~P~~iA~~i~~~l~~~~~~------~~~~~~ggfiN~~l~~~~~~~~~~~~~~~~~~~~g-------~v~v 107 (592)
T 1iq0_A 41 FALAKELRKPPQAIAQELKDRLPLPEFV------EEAVPVGGYLNFRLRTEALLREALRPKAPFPRRPG-------VVLV 107 (592)
T ss_dssp SHHHHHTTSCHHHHHHHHHHTCCCCTTE------EEEEEETTEEEEEECHHHHHHHHHSCCCCCCCEEE-------EEEE
T ss_pred HHHHHHcCCCHHHHHHHHHHhccccCcE------EEEEEcCCEEEEEECHHHHHHHHHHHHHhcCcccC-------eEEE
Confidence 468888865 999999999866666 677888899999999853 2222211122222221 8999
Q ss_pred EccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHH----------------------------H
Q 046127 94 TTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAA----------------------------A 145 (345)
Q Consensus 94 ~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~----------------------------~ 145 (345)
+.++|||||++||||+|+++++|+++|++++.||+|.++..++|.|..+.. .
T Consensus 108 e~~spn~~~~~HiGH~R~~iigD~laR~l~~~G~~V~~~~~i~D~G~q~~~li~~~~~~g~d~~~~~~~d~~~g~~y~~~ 187 (592)
T 1iq0_A 108 EHTSVNPNKELHVGHLRNIALGDAIARILAYAGREVLVLNYIDDTGRQAAETLFALRHYGLTWDGKEKYDHFAGRAYVRL 187 (592)
T ss_dssp ECCCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTEEEEEEEEECTTSHHHHHHHHHHHHTTCCCCSSSCHHHHHHHHHHHH
T ss_pred EeeCCCCCCCCcchHHHHHHHHHHHHHHHHHcCCceEEEeccCCcchHHHHHHHHHHHhCCcccCCCCcchhHHHHHHHH
Confidence 999999999999999999999999999999999999999888887744311 1
Q ss_pred ------------------HHhCCCCHHHHHHHHHHHHHHHHhhcCcccCccccCCChhhHHHHHHHHHHHHhCCCeee--
Q 046127 146 ------------------AADGGSSPSEHCDVVSQAYKTLWKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYK-- 205 (345)
Q Consensus 146 ------------------A~~~g~~p~~~~~~~~~~~~~~l~~lgI~~D~f~~T~~~~~~~~v~~~~~~L~~kG~iy~-- 205 (345)
+.+.|.. +++++.+.+.|+++|++|||++|.|.+|++..|.+.+++++++|.++|++|+
T Consensus 188 ~~~~~~~~~~~~a~~~~~~~e~g~~-~~~~~~~~~~~~~~~~~LgI~~D~~~~es~~~~~~~v~~~~~~L~~kG~~y~~~ 266 (592)
T 1iq0_A 188 HQDPEYERLQPAIEEVLHALERGEL-REEVNRILLAQMATMHALNARYDLLVWESDIVRAGLLQKALALLEQSPHVFRPR 266 (592)
T ss_dssp HHCTTTGGGHHHHHHHHHHHHTTTT-HHHHHHHHHHHHHHHHHTTCCCSEEEEHHHHHHTTHHHHHHHHHTTSTTEECCS
T ss_pred HHHHHhhhHHHHHHHHHHhCCchHH-HHHHHHHHHHHHHHHHHcCCEeEEeccCCcccccchHHHHHHHHHHCCCcccCc
Confidence 1234443 8999999999999999999999999999877778999999999999999994
Q ss_pred -cccCcccccCCCCccchhhhhcCCcCCCCCCCceEeec--cccccchhHhHHH---HHHHHhcCCCcc-cChHHHHHHH
Q 046127 206 -ADYEGLYCVNCEEYKDEKELLENQCCPIHLKPCVARKE--DNYFFALSKYQKL---LEDTLTENPDFV-QPSFRLNEVQ 278 (345)
Q Consensus 206 -~~~~~~yc~~c~~~l~d~el~~~~~c~~~~~pve~r~~--~~~f~~l~~~~~~---L~e~l~~~~~~~-~P~~~~~~~~ 278 (345)
+.+.+++|..|..+.++.++. ..+..+.. ..|+++--.|.-. +.+.+... .++ .|.
T Consensus 267 ~g~~~G~~~~~~~~~g~~~~l~---------~~vi~ksdG~~~Y~~~D~a~~~~Kl~l~~~~~~~-~~~~~p~------- 329 (592)
T 1iq0_A 267 EGKYAGALVMDASPVIPGLEDP---------FFVLLRSNGTATYYAKDIAFQFWKMGILEGLRFR-PYENPYY------- 329 (592)
T ss_dssp SSTTTTCEEEECTTTSCSCSCC---------EEEEECTTSCBCHHHHHHHHHHHHTTSSCCCEEE-ECCCSSC-------
T ss_pred ccCcCCCEEEechhcCCCCCCC---------ceEEEecCCceEEecchHHHHHHHhhhhhhhhhh-hhhcCcc-------
Confidence 355677888888776554421 11222221 2344432222222 00000010 010 110
Q ss_pred HHHhcCCCCcccccCCCCCCcccCC-CCCCcEEEe-------cCchhHHHHhcCC
Q 046127 279 GWIKSGLRDFSISRASVDWGIPVPN-DNKQTIYVW-------FDALLGYISALSE 325 (345)
Q Consensus 279 ~wl~~gL~D~~ISR~~~~WGIpvP~-~~~~~iyVW-------fdal~gYls~~~~ 325 (345)
+.+.| ..||+++|. +.+++|||| |+.+..++.++++
T Consensus 330 -----~r~~w------~~~g~~~~~~~~~~~iyV~g~~h~~~~~~~~~~~~alG~ 373 (592)
T 1iq0_A 330 -----PGLRT------SAPEGEAYTPKAEETINVVDVRQSHPQALVRAALALAGY 373 (592)
T ss_dssp -----TTCEE------EEEEEEECCCCCSEEEEEEESSSCCCHHHHHHHHHHTTC
T ss_pred -----hhhcc------cccCcccCCCCCCEEEEEEeccHHHHHHHHHHHHHHcCC
Confidence 11223 268999996 789999999 7788888887775
|
| >3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.1e-28 Score=241.23 Aligned_cols=117 Identities=18% Similarity=0.198 Sum_probs=109.3
Q ss_pred CEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Q 046127 90 PFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWK 169 (345)
Q Consensus 90 ~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~ 169 (345)
++.+..+.|+|||++||||+|+++++|+++||+|++||+|.+++|+|+||++|+.+|++.|++++++++++.+.|+++|+
T Consensus 39 ~v~~y~~gPt~yg~~HiGHar~~v~~DvlaR~lr~~G~~V~~~~~~dd~g~ki~~~A~~~g~~~~~~~~~~~~~~~~~~~ 118 (414)
T 3c8z_A 39 TATMYVCGITPYDATHLGHAATYLTFDLVHRLWLDAGHTVQYVQNVTDVDDPLFERAERDGIDWRTLGDRETQLFREDMA 118 (414)
T ss_dssp EEEEEECCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCSCHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred CceEEeCCCcCCCCcCccccHHHHHHHHHHHHHHHcCCCEEeCCCCCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 44455556788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCcc-cCccccCCChhhHHHHHHHHHHHHhCCCeeeccc
Q 046127 170 DLDIA-YDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADY 208 (345)
Q Consensus 170 ~lgI~-~D~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~ 208 (345)
+|||. +|.|++|++ |.+.++++|++|.++|++|++++
T Consensus 119 ~Lgi~~~d~~~r~t~--~~~~~~~~~~~L~~kG~~Y~~~~ 156 (414)
T 3c8z_A 119 ALRVLPPHDYVAATD--AIAEVVEMVEKLLASGAAYIVED 156 (414)
T ss_dssp HTTCCCCSEEEEGGG--CHHHHHHHHHHHHHHTSEEECSC
T ss_pred HcCCCCCcceecccc--hHHHHHHHHHHHHHCCCEEeccC
Confidence 99999 999998885 88999999999999999999874
|
| >3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.92 E-value=3.8e-25 Score=220.81 Aligned_cols=130 Identities=19% Similarity=0.191 Sum_probs=119.0
Q ss_pred CCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 046127 88 ADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTL 167 (345)
Q Consensus 88 ~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~ 167 (345)
+.++.+..++|||+|++||||+|+++++|+++||+|++||+|.++.|+||||++|+.+|++.|++++++++++.+.|+++
T Consensus 23 ~~~v~~YvcGPtvy~~~HIGHaR~~v~~Dvl~R~lr~~Gy~V~~v~n~dD~ddKIi~~A~~~g~~~~e~a~~~~~~f~~d 102 (462)
T 3tqo_A 23 SGKVKLYVCGMTVYDYMHIGHGRSWIIFDMVVRYLRMRGYEVTFVRNITDIDDKIIKRAGENKESPAALAERFIQILHED 102 (462)
T ss_dssp TTEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEECBBCCCHHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCcCCCCCchhhhHHHHHHHHHHHHHHHcCCceEEecCcCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 34566666677888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCcccCccc-cCCChhhHHHHHHHHHHHHhCCCeeec-ccCcccccCCCCc
Q 046127 168 WKDLDIAYDKFI-RTTEPKHEAIVKEFYSSVLANGDIYKA-DYEGLYCVNCEEY 219 (345)
Q Consensus 168 l~~lgI~~D~f~-~T~~~~~~~~v~~~~~~L~~kG~iy~~-~~~~~yc~~c~~~ 219 (345)
+++|||.+|.+. +++ .|.+.++++|++|+++|++|+. ++.++||++|...
T Consensus 103 ~~~LgI~~d~~~praT--e~i~~i~~~i~~L~ekG~aY~~~~g~Vyfdv~~~~~ 154 (462)
T 3tqo_A 103 EKALRVLSPDQEPRAT--QYVPEIIKLIQKLLDNQYAYTGQNGDVFFDVRRFKD 154 (462)
T ss_dssp HHHHTCCCCSBCCBGG--GCHHHHHHHHHHHHHHTSEEECTTSCEEECTTTCTT
T ss_pred HHHcCCCCCccccChh--hHHHHHHHHHHHHHHCCCEEEecCCcEEeccccccc
Confidence 999999997554 555 7999999999999999999999 7899999988643
|
| >1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B | Back alignment and structure |
|---|
Probab=99.91 E-value=1.4e-24 Score=217.51 Aligned_cols=127 Identities=24% Similarity=0.314 Sum_probs=117.0
Q ss_pred CCCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 046127 87 PADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKT 166 (345)
Q Consensus 87 ~~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~ 166 (345)
+..++++|+ |+|+|++||||+|++|++|+++||+|++||+|.++.|+||+|++|+.+|++.|.+++++++++.+.|++
T Consensus 21 ~~v~~yv~g--Pt~y~~~HiGHar~~v~~D~l~R~lr~~G~~V~~v~~~tD~d~ki~~~A~~~g~~~~~~~~~~~~~f~~ 98 (461)
T 1li5_A 21 GEVGMYVCG--ITVYDLCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANENGESFVAMVDRMIAEMHK 98 (461)
T ss_dssp TEEEEEECC--CBSSSCCBHHHHHHHHHHHHHHHHHHHHTCEEEEEECBBCCSHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCeeEEEcC--CcCCCCCcccccHHHHHHHHHHHHHHHcCCCEEEeecCCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 334566654 555599999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCccc-CccccCCChhhHHHHHHHHHHHHhCCCeeec-ccCcccccCCC
Q 046127 167 LWKDLDIAY-DKFIRTTEPKHEAIVKEFYSSVLANGDIYKA-DYEGLYCVNCE 217 (345)
Q Consensus 167 ~l~~lgI~~-D~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~-~~~~~yc~~c~ 217 (345)
+|++|||.+ |.|+++++ |.+.+++++++|.++|++|+. ++.+|||+.|.
T Consensus 99 ~~~~LgI~~~d~~~r~t~--~~~~~~~~i~~L~~~G~aY~~~~g~v~f~~~~~ 149 (461)
T 1li5_A 99 DFDALNILRPDMEPRATH--HIAEIIELTEQLIAKGHAYVADNGDVMFDVPTD 149 (461)
T ss_dssp HHHHTTCCCCSBCCBGGG--CHHHHHHHHHHHHHTTSEEECTTSCEEECGGGC
T ss_pred HHHHcCCCCCcccccccc--hHHHHHHHHHHHHHCCCEEEecCCCEEEecccc
Confidence 999999997 78888874 899999999999999999999 89999999874
|
| >3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.9e-24 Score=215.73 Aligned_cols=127 Identities=21% Similarity=0.249 Sum_probs=101.3
Q ss_pred CCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCC----------CCcChHHHHHHHhCCCCHHHHH
Q 046127 88 ADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGT----------DEHGEKIAAAAADGGSSPSEHC 157 (345)
Q Consensus 88 ~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~----------D~~G~~I~~~A~~~g~~p~~~~ 157 (345)
..++|||+ |+|+|.+||||+|++|++|+++||+|++||+|.++.|+ |+||++|+.+|++.|++|++++
T Consensus 42 ~v~~Yvcg--PTvYg~~HIGHar~~v~~Dvl~R~lr~~Gy~V~~v~niTDvGhltG~~DehddKI~~~A~~~g~~~~e~a 119 (501)
T 3sp1_A 42 NVKVYACG--PTVYNYAHIGNFRTYIFGDLLIKTLRFLGYKVNYAMNITDIGHLTGDLDDGEDKVAKTAREKGLTVYEIS 119 (501)
T ss_dssp CEEEEECC--CBCSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEBCSCCC-------------------CCHHHHH
T ss_pred cceEEeCC--CcCCCCcchhhhHHHHHHHHHHHHHHHcCCceeEEeeecccccccCCCCCCCcHHHHHHHHcCCCHHHHH
Confidence 44555554 56669999999999999999999999999999999654 6669999999999999999999
Q ss_pred HHHHHHHHHHHhhcCcccCccccCCChhhHHHHHHHHHHHHhCCCeeecccCcccccCCC
Q 046127 158 DVVSQAYKTLWKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLYCVNCE 217 (345)
Q Consensus 158 ~~~~~~~~~~l~~lgI~~D~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~~c~ 217 (345)
+++.+.|+++|++|||.+|.+.. +++.|...++++|++|+++|++|++++.+|||+++-
T Consensus 120 ~~~~~~f~~d~~~Lgi~~d~~~~-~~t~hi~~v~~~i~~L~~kG~aY~~~g~Vyf~v~~f 178 (501)
T 3sp1_A 120 EFFTEAFFNDCRKLNIVYPDKVL-VASKHIPIMIEVVKILEEKKITYFSNGNVYFDTSCF 178 (501)
T ss_dssp HHHHHHHHHHHHHTTCCCCSEEE-EGGGCHHHHHHHHHHHHHTTCEEEETTEEEECGGGC
T ss_pred HHHHHHHHHHHHHcCCCCCCccc-CcchHHHHHHHHHHHHHHCCCEEEeCCcEEecCCcc
Confidence 99999999999999999997764 467899999999999999999999999999999883
|
| >1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=5.9e-23 Score=211.74 Aligned_cols=181 Identities=15% Similarity=0.111 Sum_probs=145.2
Q ss_pred HHHHHHHhhchhcchhhccccccccccccccccccccccccccccc-ccccccCCCCCCC-CCCCCCEEEEccCCCCCCc
Q 046127 26 EEMAARINYSIQNSLWLLNPLHSKATTHFRNRLKFRQNLFSLSKGA-VFCSYATNTDKSG-TEPADPFVLTTPLYYVNAP 103 (345)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~I~~~~PypnG~ 103 (345)
++||++|+.+++....| +.++...+++||.+++.++.... ..-+.....++.. ...+++++|...+|||||+
T Consensus 84 ~~iA~~i~~~l~~~~~i------~~ve~ag~fiN~~l~~~~~~~~~~~~i~~~~~~~G~~~~~~~~~V~ve~~spN~~~p 157 (607)
T 1f7u_A 84 KDLAVQWAEKFPCGDFL------EKVEANGPFIQFFFNPQFLAKLVIPDILTRKEDYGSCKLVENKKVIIEFSSPNIAKP 157 (607)
T ss_dssp HHHHHHHHHTCCCTTTE------EEEEEETTEEEEEECHHHHHHHHHHHHHHHGGGTTCCCCSSCCEEEEECCCCBTTSC
T ss_pred HHHHHHHHHhccccCce------eEEEEcCCEEEEEECHHHHHHHHHHHHHhhhhhcCCCcccCCCeEEEEecCCCCCCC
Confidence 46999999999777667 77888889999999986655422 2223444455433 3567889999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHH----------------------------------------
Q 046127 104 PHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIA---------------------------------------- 143 (345)
Q Consensus 104 LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~---------------------------------------- 143 (345)
+||||+|+++++|+++|+++..||+|.++..++|+|.++.
T Consensus 158 lHvGHlRs~iiGD~laRil~~~G~~V~~~~~i~D~G~Q~~~l~~~~~~~g~~~~~~~~~i~~l~~~Y~~~~~~~~~~~e~ 237 (607)
T 1f7u_A 158 FHAGHLRSTIIGGFLANLYEKLGWEVIRMNYLGDWGKQFGLLAVGFERYGNEEALVKDPIHHLFDVYVRINKDIEEEGDS 237 (607)
T ss_dssp CBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHHHHCCHHHHHHCHHHHHHHHHHHHHHHHHHSTTS
T ss_pred CccchHHHHHHHHHHHHHHHHcCCCeeEEEeecCcchHHHHHHHHHHHhCchhhccCCChHHHHHHHHHHHHHhhhcccc
Confidence 9999999999999999999999999999999999887642
Q ss_pred --------HHHHh------CCCC-----HHHHHHHHHHHHHHHHhhcCcccCccccCCChhhHHHHHHHHHHHHhCCCee
Q 046127 144 --------AAAAD------GGSS-----PSEHCDVVSQAYKTLWKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIY 204 (345)
Q Consensus 144 --------~~A~~------~g~~-----p~~~~~~~~~~~~~~l~~lgI~~D~f~~T~~~~~~~~v~~~~~~L~~kG~iy 204 (345)
..|++ .|.+ .+++++.+.+.|++++++|||.+|.|.++++ .+...+.++++.|.++|++|
T Consensus 238 g~~~~~i~~~A~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~L~V~fD~~~~ES~-~~~~~~~~vi~~L~~kG~~y 316 (607)
T 1f7u_A 238 IPLEQSTNGKAREYFKRMEDGDEEALKIWKRFREFSIEKYIDTYARLNIKYDVYSGESQ-VSKESMLKAIDLFKEKGLTH 316 (607)
T ss_dssp SCHHHHSSHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSEEEEGGG-CCHHHHHHHHHHHHHTTCEE
T ss_pred ccccHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcceeecCcch-hhhhHHHHHHHHHHhCCCEE
Confidence 22333 2433 3578999999999999999999999887774 23378899999999999999
Q ss_pred ecccCcccc
Q 046127 205 KADYEGLYC 213 (345)
Q Consensus 205 ~~~~~~~yc 213 (345)
+.++.+|+.
T Consensus 317 e~dGa~~~~ 325 (607)
T 1f7u_A 317 EDKGAVLID 325 (607)
T ss_dssp EETTEEEEE
T ss_pred EECCcEEEE
Confidence 988777664
|
| >1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1 | Back alignment and structure |
|---|
Probab=99.74 E-value=3.5e-19 Score=181.13 Aligned_cols=109 Identities=14% Similarity=0.057 Sum_probs=96.5
Q ss_pred EEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcC--hHH---HHHHHhC--CCCH----------
Q 046127 91 FVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHG--EKI---AAAAADG--GSSP---------- 153 (345)
Q Consensus 91 ~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G--~~I---~~~A~~~--g~~p---------- 153 (345)
.+|+.+.|||||++||||+|+++.+|+++|+++++|++|.++.++||+| .+| ...|.+. |+++
T Consensus 21 ~yv~~tgPsPtG~lHIGhaR~al~~D~laR~l~~~g~~v~fi~~idD~d~~rkip~~~~~a~~~~~G~~~~~~p~p~~~~ 100 (523)
T 1irx_A 21 KYVVESGITPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYDRFRKVPRNVPQEWKDYLGMPISEVPDPWGCH 100 (523)
T ss_dssp EEEEEEEECCSSCCCHHHHHHHHHHHHHHHHHHTTTCEEEEEEEECTTSBCCCCCSSSCGGGGGGTTSBGGGSCCTTSSS
T ss_pred eEEECCCCCCCCCcccCCcHHHHHHHHHHHHHHHcCCCEEEEEeeCCcchhhhhhhHHHHHHHHHcCCCcccCCcchhhH
Confidence 5666567899999999999999999999999999999999999999999 766 4455555 8887
Q ss_pred HHHHHHHHHHHHHHHhhcCcccCccccCCChhhHH-HHHHHHHHHHhCC
Q 046127 154 SEHCDVVSQAYKTLWKDLDIAYDKFIRTTEPKHEA-IVKEFYSSVLANG 201 (345)
Q Consensus 154 ~~~~~~~~~~~~~~l~~lgI~~D~f~~T~~~~~~~-~v~~~~~~L~~kG 201 (345)
+++++++.+.|+++|++|||++|.+ ++++. |.+ .+++++++|+++|
T Consensus 101 ~~~~~~~~~~~~~~l~~Lgi~~D~~-~~se~-~~~g~~~~~i~~L~~~G 147 (523)
T 1irx_A 101 ESYAEHFMRKFEEEVEKLGIEVDLL-YASEL-YKRGEYSEEIRLAFEKR 147 (523)
T ss_dssp SSHHHHHHHHHHHHHHTTTCCCEEE-EHHHH-HHTTTTHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHcCCCceEE-echhh-ccchHHHHHHHHHHHch
Confidence 8899999999999999999999987 66643 777 8999999999999
|
| >3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=99.72 E-value=8.8e-18 Score=168.08 Aligned_cols=134 Identities=18% Similarity=0.212 Sum_probs=106.9
Q ss_pred CCCCCCCCCCCCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHH-------Hh--
Q 046127 78 TNTDKSGTEPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAA-------AD-- 148 (345)
Q Consensus 78 ~~~~~~~~~~~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A-------~~-- 148 (345)
..+++..+.++++++|..++|||||+|||||+|+++++|+++|++++.||+|.....++|.|.++..-+ .+
T Consensus 19 ~~~yG~~~~~~~~v~vE~ss~n~~~~~h~gh~r~~~~gd~~~r~~~~~G~~v~r~nyi~D~G~Q~g~l~~~~~~~y~~~~ 98 (464)
T 3fnr_A 19 PNDFTKGEKKQESFLLEYVSANPTGPLHIGHARGAVFGDTLTRLARHLGYKFNTEYYVNDAGNQIYLLGLSILLSVKESI 98 (464)
T ss_dssp GGGTTCCCCCSCEEEEECCCCCSSSSCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHHHHHHHHHHHHT
T ss_pred HHhcCCCCCCCCEEEEEeCCCCCCCCCccchhHHHHHHHHHHHHHHHcCCceEEEeeeCCccHHHHHHHHHHHHHHHHHh
Confidence 334443333678999999999999999999999999999999999999999999999999999873321 11
Q ss_pred CCCC---H----------------------------------HHHHHHHHHHHHHHHhhcCcccCccccCCChhhHHHHH
Q 046127 149 GGSS---P----------------------------------SEHCDVVSQAYKTLWKDLDIAYDKFIRTTEPKHEAIVK 191 (345)
Q Consensus 149 ~g~~---p----------------------------------~~~~~~~~~~~~~~l~~lgI~~D~f~~T~~~~~~~~v~ 191 (345)
.+.+ | +..++...+.|++++++|||.||.|..+++ .|. .+.
T Consensus 99 ~~~~~~~p~~~y~g~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~V~fD~~~~Ess-~~~-~~~ 176 (464)
T 3fnr_A 99 LHENVEYPEQYYKGEYIVDLAKEAFEKFGKEFFSEENIPSLADWAKDKMLVLIKQNLEQAKIKIDSYVSERS-YYD-ALN 176 (464)
T ss_dssp SCCCCCCCSSCCCSHHHHHHHHHHHHHHCGGGCSGGGHHHHHHHHHHHHHHHHHHHHHHTTCCCSCEEEGGG-GST-THH
T ss_pred cCCCCCCchhhcCccHHHHHHHHHHHhcchhhcCcHHHHHHHHHHHHHHHHHHHHHHHHhCCCceeecCHHH-HHH-HHH
Confidence 1111 0 123355677899999999999998876643 344 899
Q ss_pred HHHHHHHhCCCeeecccCcccc
Q 046127 192 EFYSSVLANGDIYKADYEGLYC 213 (345)
Q Consensus 192 ~~~~~L~~kG~iy~~~~~~~yc 213 (345)
++++.|.++|++|++++..|..
T Consensus 177 ~vv~~L~~~g~~~e~dGa~~~~ 198 (464)
T 3fnr_A 177 ATLESLKEHKGIYEQEGKIWLA 198 (464)
T ss_dssp HHHHHHHHTTCEEEETTEEEEC
T ss_pred HHHHHHHHCCCEEEeCCeEEEE
Confidence 9999999999999999887774
|
| >1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=1.1e-10 Score=110.41 Aligned_cols=94 Identities=10% Similarity=0.119 Sum_probs=74.1
Q ss_pred EEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhc
Q 046127 92 VLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKDL 171 (345)
Q Consensus 92 ~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~~l 171 (345)
+++.-+|+|||+|||||+|+++....++| ++.+.++.-++|.+.+ .-...+.+.|.++|++|
T Consensus 6 v~~RFAPsPtG~LHiG~~rtal~n~l~Ar-----~~~g~~ilRieDtD~~-------------R~~~~~~~~I~~dL~~L 67 (298)
T 1nzj_A 6 YIGRFAPSPSGELHFGSLIAALGSYLQAR-----ARQGRWLVRIEDIDPP-------------REVPGAAETILRQLEHY 67 (298)
T ss_dssp CEEEECCCTTSCCCHHHHHHHHHHHHHHH-----HTTCEEEEEECCSCGG-------------GSCTTHHHHHHHHHHHT
T ss_pred eEEEECcCCCCCccHHHHHHHHHHHHHHH-----hcCCeEEEEEecCCch-------------hhHHHHHHHHHHHHHHc
Confidence 56778889999999999999985555554 5567777777776543 12256889999999999
Q ss_pred CcccCc-cccCCChhhHHHHHHHHHHHHhCCCeee
Q 046127 172 DIAYDK-FIRTTEPKHEAIVKEFYSSVLANGDIYK 205 (345)
Q Consensus 172 gI~~D~-f~~T~~~~~~~~v~~~~~~L~~kG~iy~ 205 (345)
||.+|. .++.+ .+.+...+++++|.++|++|.
T Consensus 68 Gl~~D~~~~~qS--er~~~y~~~~~~L~~~G~aY~ 100 (298)
T 1nzj_A 68 GLHWDGDVLWQS--QRHDAYREALAWLHEQGLSYY 100 (298)
T ss_dssp TCCCSSCCEEGG--GCHHHHHHHHHHHHHTTCEEE
T ss_pred CCCCCCCCeeee--CCHHHHHHHHHHHHHcCCccc
Confidence 999995 44444 467888999999999999996
|
| >3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid} | Back alignment and structure |
|---|
Probab=98.99 E-value=2.6e-10 Score=115.43 Aligned_cols=94 Identities=15% Similarity=0.163 Sum_probs=78.3
Q ss_pred EEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhc
Q 046127 92 VLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKDL 171 (345)
Q Consensus 92 ~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~~l 171 (345)
+++.-+|+|||+|||||+|++++.+.++| +|.+.++..+||.+.+ .-..++.+.|.++|+.|
T Consensus 97 v~tRFaPsPtG~LHIGhaRtal~n~l~Ar-----~~~G~~iLRieDtD~~-------------R~~~e~~~~I~edL~wL 158 (553)
T 3aii_A 97 VVLRFAPNPSGPLHIGHARAAILNHEYAR-----KYDGRLILRIEDTDPR-------------RVDPEAYDMIPADLEWL 158 (553)
T ss_dssp CEEEECCCSSSSCBHHHHHHHHHHHHHHH-----HTTCEEEEEECCCCGG-------------GCCTTHHHHHHHHHHHH
T ss_pred eEEEeCCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEEECcCCcc-------------cccHHHHHHHHHHHHHc
Confidence 67888899999999999999998666665 5677788888887643 11446889999999999
Q ss_pred CcccCccccCCChhhHHHHHHHHHHHHhCCCeee
Q 046127 172 DIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYK 205 (345)
Q Consensus 172 gI~~D~f~~T~~~~~~~~v~~~~~~L~~kG~iy~ 205 (345)
|+.+|..++.+ .|.+...+.+.+|+++|++|.
T Consensus 159 Gl~wd~~~~qS--dr~~~y~~~~~~Li~~G~AY~ 190 (553)
T 3aii_A 159 GVEWDETVIQS--DRMETYYEYTEKLIERGGAYV 190 (553)
T ss_dssp TCCCSEEEEGG--GGHHHHHHHHHHHHHTTSEEE
T ss_pred CCCCCCCcccc--cCHHHHHHHHHHHHHcCCcee
Confidence 99999766555 688899999999999999996
|
| >2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.96 E-value=7.1e-10 Score=111.35 Aligned_cols=99 Identities=15% Similarity=0.096 Sum_probs=76.0
Q ss_pred CCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 046127 89 DPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLW 168 (345)
Q Consensus 89 ~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l 168 (345)
-.++++..+|+|||+|||||+|+++++|.+||. ..|.-++. ++|.+ ++...+...+.|.++|
T Consensus 11 ~~vv~~RfaPsPTG~LHiG~aRtAl~n~~~Ar~--~~G~~iLR---ieDtD-------------~~r~~~~~~~~I~~~l 72 (481)
T 2o5r_A 11 HHMVRVRFAPSPTGFLHVGGARTALFNFLFARK--EKGKFILR---IEDTD-------------LERSEREYEEKLMESL 72 (481)
T ss_dssp --CCEEEECCCCCSCCBHHHHHHHHHHHHHHHH--HTCEEEEC---BCCSS-------------CCSGGGHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCCcCHHHHHHHHHHHHHHHH--cCCeEEEE---EecCC-------------ccccHHHHHHHHHHHH
Confidence 458889999999999999999999999999996 67866655 44443 1123355677889999
Q ss_pred hhcCcccCccc-------cCCChhhHHHHHHHHHHHHhCCCeee
Q 046127 169 KDLDIAYDKFI-------RTTEPKHEAIVKEFYSSVLANGDIYK 205 (345)
Q Consensus 169 ~~lgI~~D~f~-------~T~~~~~~~~v~~~~~~L~~kG~iy~ 205 (345)
+.||+.+|..+ ....+.+.+...++.++|.++|.+|.
T Consensus 73 ~wlGl~~de~p~~gg~~g~y~QS~r~~~y~~~a~~L~~~G~aY~ 116 (481)
T 2o5r_A 73 RWLGLLWDEGPDVGGDHGPYRQSERVEIYREHAERLVKEGKAYY 116 (481)
T ss_dssp HHHTCCCSBBTTTBCTTCCCBGGGGHHHHHHHHHHHHHTTSEEE
T ss_pred HHcCCCCCCCcccCCCCCceeeeccHHHHHHHHHHHHHCCCeeE
Confidence 99999999631 11234677888899999999999984
|
| >1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A | Back alignment and structure |
|---|
Probab=98.92 E-value=1.1e-09 Score=110.80 Aligned_cols=94 Identities=15% Similarity=0.013 Sum_probs=74.5
Q ss_pred EEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhc
Q 046127 92 VLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKDL 171 (345)
Q Consensus 92 ~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~~l 171 (345)
+++.-+|.|||+|||||+|++++.+.+|| ++.+.++..+||.+.. ....++.+.|.++|+.|
T Consensus 27 v~tRFaPSPtG~LHIGhaRtal~n~l~Ar-----~~gG~fiLRieDTD~~-------------R~~~e~~~~I~edL~wL 88 (553)
T 1qtq_A 27 VHTRFPPEPNGYLHIGHAKSICLNFGIAQ-----DYKGQCNLRFDDTNPV-------------KEDIEYVESIKNDVEWL 88 (553)
T ss_dssp CEEEECCCTTSCCBHHHHHHHHHHHHHHH-----HTTCEEEEEECCCCGG-------------GCCHHHHHHHHHHHHHT
T ss_pred eEEEeCCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEEECCCCch-------------hcCHHHHHHHHHHHHHc
Confidence 67788889999999999999999777777 3555677777776531 23567899999999999
Q ss_pred CcccC-ccccCCChhhHHHHHHHHHHHHhCCCeee
Q 046127 172 DIAYD-KFIRTTEPKHEAIVKEFYSSVLANGDIYK 205 (345)
Q Consensus 172 gI~~D-~f~~T~~~~~~~~v~~~~~~L~~kG~iy~ 205 (345)
|+.+| ..++.+ .|.+...+...+|+++|++|.
T Consensus 89 Gl~wde~~~~qS--er~~~~~~~a~~Li~~G~AY~ 121 (553)
T 1qtq_A 89 GFHWSGNVRYSS--DYFDQLHAYAIELINKGLAYV 121 (553)
T ss_dssp TCCCSSSCEEGG--GGHHHHHHHHHHHHHTTSEEE
T ss_pred CCCCCCCCeehc--ccHHHHHHHHHHHHHCCCcee
Confidence 99996 444444 567777778889999999996
|
| >3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.84 E-value=5.4e-09 Score=107.30 Aligned_cols=96 Identities=17% Similarity=0.162 Sum_probs=73.5
Q ss_pred CCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 046127 89 DPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLW 168 (345)
Q Consensus 89 ~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l 168 (345)
+++.+-.+ |+|||+|||||+|+++..+.+||. ..|. ++.-++|.+ +..-...+.+.|.++|
T Consensus 128 ~~v~~RFa-PsPTG~LHiG~artAl~n~l~Ar~--~~G~---~ilRieDtD-------------~~r~~~~~~~~I~~dL 188 (592)
T 3al0_C 128 ELVRVRFA-PSPTGHLHVGGARTALFNWMFARK--EGGK---FILRIEDTD-------------TERSSREYEQQILESL 188 (592)
T ss_dssp CCCEEEEC-CCSSSCCBHHHHHHHHHHHHHHHH--HTCE---EEECBCCCC-------------SSSCCHHHHHHHHHHH
T ss_pred CeEEEEEC-CCCCCCccHHHHHHHHHHHHHHHh--cCCc---EEEEecCcC-------------hhhccHHHHHHHHHHH
Confidence 35555555 899999999999999999999995 4554 444455543 2223456788999999
Q ss_pred hhcCcccCcc---------ccCCChhhHHHHHHHHHHHHhCCCeee
Q 046127 169 KDLDIAYDKF---------IRTTEPKHEAIVKEFYSSVLANGDIYK 205 (345)
Q Consensus 169 ~~lgI~~D~f---------~~T~~~~~~~~v~~~~~~L~~kG~iy~ 205 (345)
++|||.+|.- ++.+ .+.+...+.+.+|.++|++|.
T Consensus 189 ~wlGl~~D~~~~~gG~~gp~~qS--er~~~y~~~~~~L~~~G~aY~ 232 (592)
T 3al0_C 189 RWCGLDWDEGPDIGGDFGPYRQS--ERLEIYREYAEKLVEDKRAYY 232 (592)
T ss_dssp HHTTCCCSBBTTTBCTTCCCBST--TCHHHHHHHHHHHHHTTTEEE
T ss_pred HHcCCCCCCCCCcCCCCCCeeee--CCHHHHHHHHHHHHHcCCceE
Confidence 9999999962 3333 456788999999999999996
|
| >2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.84 E-value=2e-09 Score=113.46 Aligned_cols=94 Identities=15% Similarity=0.124 Sum_probs=76.6
Q ss_pred EEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhc
Q 046127 92 VLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKDL 171 (345)
Q Consensus 92 ~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~~l 171 (345)
+++.-+|.|||+|||||+|++++...++| +|.+.++..+||.+.. .-..++.+.|.++|++|
T Consensus 67 v~tRFaPSPtG~LHIGhARtAL~n~l~Ar-----~~gG~fiLRIEDTD~~-------------R~~~e~~~~IledL~wL 128 (851)
T 2hz7_A 67 VVTRFPPDPSGYAHLGHVFASLLDFNTAR-----QYGGQFNLRMDDTNPE-------------LARQEYVDSIADDLKWL 128 (851)
T ss_dssp CEEEECCCSSSCCBHHHHHHHHHHHHHHH-----HTTCEEEEEECCCCTT-------------TCCHHHHHHHHHHHHHH
T ss_pred eEEEeCCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEEECcCCcc-------------cccHHHHHHHHHHHHHc
Confidence 67888899999999999999999777766 4566777777777643 12557899999999999
Q ss_pred CcccC-ccccCCChhhHHHHHHHHHHHHhCCCeee
Q 046127 172 DIAYD-KFIRTTEPKHEAIVKEFYSSVLANGDIYK 205 (345)
Q Consensus 172 gI~~D-~f~~T~~~~~~~~v~~~~~~L~~kG~iy~ 205 (345)
|+.+| ..++.+ .|.+...+++.+|+++|++|.
T Consensus 129 Gl~wde~~~~qS--er~d~y~e~a~~LI~~G~AY~ 161 (851)
T 2hz7_A 129 GLDWGEHFYYAS--DYFDRYYAYAEQLIRQGDAYV 161 (851)
T ss_dssp TCCCTTCEEEGG--GGHHHHHHHHHHHHHTTSEEE
T ss_pred CCCCCCCcccHh--hhHHHHHHHHHHHHHCCCcEe
Confidence 99996 444444 688899999999999999996
|
| >2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus} | Back alignment and structure |
|---|
Probab=98.84 E-value=1.9e-09 Score=108.38 Aligned_cols=94 Identities=15% Similarity=0.117 Sum_probs=72.8
Q ss_pred EEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhc
Q 046127 92 VLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKDL 171 (345)
Q Consensus 92 ~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~~l 171 (345)
+++.-.|.|||+|||||+|+++....++| ++.+.++.-+||.+. +. -...+.+.|.++|+.|
T Consensus 2 v~~RFAPSPtG~lHiG~artal~n~l~Ar-----~~~G~filRieDtD~-------~R------~~~~~~~~i~~dL~wL 63 (492)
T 2cfo_A 2 VRVRLAPSPTGNLHIGTARTAVFNWLYAR-----HRGGKFILRIEDTDR-------ER------SRPEYTENILEGLQWL 63 (492)
T ss_dssp CEEEECCCTTSCCBHHHHHHHHHHHHHHH-----HTTCEEEEEECCCSS-------SS------CCHHHHHHHHHHHHHT
T ss_pred ceEEeCCCCCCCccHHHHHHHHHHHHHHH-----hcCCeEEEEEeeCCc-------cc------cchHHHHHHHHHHHHc
Confidence 35667889999999999999998666665 455666666776652 11 1256789999999999
Q ss_pred CcccCc-cccCCChhhHHHHHHHHHHHHhCCCeee
Q 046127 172 DIAYDK-FIRTTEPKHEAIVKEFYSSVLANGDIYK 205 (345)
Q Consensus 172 gI~~D~-f~~T~~~~~~~~v~~~~~~L~~kG~iy~ 205 (345)
||.+|. .++.+ .+.+...+.+.+|.++|++|.
T Consensus 64 Gl~wde~~~~QS--~r~~~y~~~~~~Li~~G~AY~ 96 (492)
T 2cfo_A 64 GLTWDEGPYFQS--DRLDLYRQAIQTLLDKGLAYY 96 (492)
T ss_dssp TCCCSEEEEEGG--GCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCCCCCCcccc--CCHHHHHHHHHHHHHCCCceE
Confidence 999995 44444 577788899999999999995
|
| >4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=98.73 E-value=1.8e-08 Score=101.00 Aligned_cols=94 Identities=17% Similarity=0.144 Sum_probs=72.9
Q ss_pred EEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhc
Q 046127 92 VLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKDL 171 (345)
Q Consensus 92 ~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~~l 171 (345)
+++.-.|.|||+|||||+|+++..+.++|. ..| .++.-+||.+. ......+.+.|.++|++|
T Consensus 26 v~~RFAPSPTG~lHiG~~rtal~n~l~Ar~--~~G---~filRieDtD~-------------~R~~~~~~~~i~~dl~wl 87 (490)
T 4g6z_A 26 VRTRFAPSPTGFIHLGNIRSALYPWAFARK--MKG---TFVLRIEDTDV-------------ERSSQEAVDAILEGMAWL 87 (490)
T ss_dssp CEEEECCCCCSCCBHHHHHHHHHHHHHHHH--TTC---EEEEEECCCCG-------------GGCCHHHHHHHHHHHHHT
T ss_pred ceEEeCCCCCCCccHHHHHHHHHHHHHHHh--cCC---eEEEEeCCCCc-------------ccccHHHHHHHHHHHHHc
Confidence 567777899999999999999998888883 344 45555555442 112357899999999999
Q ss_pred CcccCcc-ccCCChhhHHHHHHHHHHHHhCCCeee
Q 046127 172 DIAYDKF-IRTTEPKHEAIVKEFYSSVLANGDIYK 205 (345)
Q Consensus 172 gI~~D~f-~~T~~~~~~~~v~~~~~~L~~kG~iy~ 205 (345)
||.+|.. ++.+ .+.+...+++.+|.++|++|.
T Consensus 88 Gl~~d~~~~~qS--~r~~~y~~~~~~Li~~G~aY~ 120 (490)
T 4g6z_A 88 GLDYDEGPYYQM--QRMDRYREVLAQMQEKGLVYP 120 (490)
T ss_dssp TCCCSEEEEEGG--GCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCCCCCCcccc--cCHHHHHHHHHHHHHCCCEEe
Confidence 9999953 3333 577888999999999999994
|
| >3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B* | Back alignment and structure |
|---|
Probab=98.65 E-value=3e-08 Score=99.56 Aligned_cols=94 Identities=17% Similarity=0.142 Sum_probs=73.2
Q ss_pred EEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhc
Q 046127 92 VLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKDL 171 (345)
Q Consensus 92 ~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~~l 171 (345)
+++.-.|.|||+|||||+|+++....+||- ..| .++.-+||.+.. .....+.+.|.++|+.|
T Consensus 26 v~~RFAPsPtG~LHiG~~rtal~n~l~Ar~--~~G---~filRieDtD~~-------------R~~~~~~~~I~~dL~wl 87 (488)
T 3afh_A 26 VRVRFAPSPTGHLHVGGARTALFNWMFARK--EGG---KFILRIEDTDTE-------------RSSREYEQQILESLRWC 87 (488)
T ss_dssp CEEEECCCCSSSCBHHHHHHHHHHHHHHHH--HTC---EEEECBCCCCTT-------------TCCHHHHHHHHHHHHHT
T ss_pred ceEEECCCCCCCccHHHHHHHHHHHHHHHH--cCC---EEEEEEeeCCcc-------------cccHHHHHHHHHHHHHc
Confidence 567778899999999999999998888883 344 455566666422 22456788899999999
Q ss_pred CcccCcc---------ccCCChhhHHHHHHHHHHHHhCCCeee
Q 046127 172 DIAYDKF---------IRTTEPKHEAIVKEFYSSVLANGDIYK 205 (345)
Q Consensus 172 gI~~D~f---------~~T~~~~~~~~v~~~~~~L~~kG~iy~ 205 (345)
||.+|.- ++.+ .+.+..++.+++|.++|.+|.
T Consensus 88 Gl~wDe~~~~gG~~gp~~QS--er~~~y~~~~~~L~~~G~aY~ 128 (488)
T 3afh_A 88 GLDWDEGPDIGGDFGPYRQS--ERLEIYREYAEKLVEDKRAYY 128 (488)
T ss_dssp TCCCSBBTTTBCTTCCCBGG--GCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCCCcCCCCCCCCCCeeee--CCHHHHHHHHHHHHHcCCeEe
Confidence 9999963 3333 566788999999999999996
|
| >4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi} | Back alignment and structure |
|---|
Probab=98.65 E-value=2.4e-08 Score=101.03 Aligned_cols=96 Identities=17% Similarity=0.173 Sum_probs=72.2
Q ss_pred EEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhc
Q 046127 92 VLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKDL 171 (345)
Q Consensus 92 ~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~~l 171 (345)
+.|.-+|.|||+|||||+|++++...+|| +..| .|+.-+||.+. ......+.+.|.++|+.|
T Consensus 25 vrtRFAPsPtG~LHiG~artAl~n~~~Ar--~~~G---~fiLRieDtD~-------------~R~~~~~~~~I~~~L~wl 86 (512)
T 4gri_A 25 TRVRYAPSPTGLQHIGGIRTALFNYFFAK--SCGG---KFLLRIEDTDQ-------------SRYSPEAENDLYSSLKWL 86 (512)
T ss_dssp CEEEECCCSSSCCBHHHHHHHHHHHHHHH--HTTC---EEEECBCCCCT-------------TSCCHHHHHHHHHHHHHH
T ss_pred eeEEeCcCCCCcccHHHHHHHHHHHHHHH--HcCC---EEEEEeCcCCC-------------CcCCHHHHHHHHHHHHHc
Confidence 56677889999999999999999999998 4455 35556666542 122345788899999999
Q ss_pred CcccCcccc-------CCChhhHHHHHHHHHHHHhCCCeee
Q 046127 172 DIAYDKFIR-------TTEPKHEAIVKEFYSSVLANGDIYK 205 (345)
Q Consensus 172 gI~~D~f~~-------T~~~~~~~~v~~~~~~L~~kG~iy~ 205 (345)
||.+|.-+. ...+.+.+.-++...+|+++|.+|.
T Consensus 87 Gl~wDe~p~~~g~~~py~QS~r~~~Y~~~~~~L~~~G~aY~ 127 (512)
T 4gri_A 87 GISFDEGPVVGGDYAPYVQSQRSAIYKQYAKYLIESGHAYY 127 (512)
T ss_dssp TCCCSBBTTTBCTTCCCBGGGCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCCCcCCccCCCCCCccccchHHHHHHHHHHHHHcCCccc
Confidence 999995221 1233566777888999999999995
|
| >1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A | Back alignment and structure |
|---|
Probab=98.57 E-value=4.9e-08 Score=97.61 Aligned_cols=96 Identities=22% Similarity=0.273 Sum_probs=73.2
Q ss_pred EEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhc
Q 046127 92 VLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKDL 171 (345)
Q Consensus 92 ~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~~l 171 (345)
+++.-+|.|||+|||||+|+++....+|| ...| .++.-+||.+.. .....+.+.|.++|+.|
T Consensus 2 v~~RFaPsPtG~LHiG~~rtal~n~l~Ar--~~~G---~filRieDtD~~-------------R~~~~~~~~I~~dl~wl 63 (468)
T 1j09_A 2 VVTRIAPSPTGDPHVGTAYIALFNYAWAR--RNGG---RFIVRIEDTDRA-------------RYVPGAEERILAALKWL 63 (468)
T ss_dssp CEEEECCCCSSSCBHHHHHHHHHHHHHHH--HTTC---EEEECBCCCCTT-------------SCCTTHHHHHHHHHHHT
T ss_pred ceEEeCCCCCCCccHHHHHHHHHHHHHHH--HcCC---EEEEEeCcCCCc-------------ccChHHHHHHHHHHHHc
Confidence 35667889999999999999999998888 3344 466667766432 12345788999999999
Q ss_pred CcccCccc-------cCCChhhHHHHHHHHHHHHhCCCeee
Q 046127 172 DIAYDKFI-------RTTEPKHEAIVKEFYSSVLANGDIYK 205 (345)
Q Consensus 172 gI~~D~f~-------~T~~~~~~~~v~~~~~~L~~kG~iy~ 205 (345)
|+.+|.-+ -...+.+.+...+.+.+|.++|.+|.
T Consensus 64 Gl~wd~~~~~gG~~gp~~QS~r~~~y~~~~~~L~~~G~aY~ 104 (468)
T 1j09_A 64 GLSYDEGPDVGGPHGPYRQSERLPLYQKYAEELLKRGWAYR 104 (468)
T ss_dssp TCCCSBBTTTBCTTCCCBGGGCHHHHHHHHHHHHHHTSEEE
T ss_pred CCCCCCCCCCCCCCCCeeccCCHHHHHHHHHHHHHcCCeEE
Confidence 99999642 11233677888899999999999995
|
| >2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A | Back alignment and structure |
|---|
Probab=98.54 E-value=8.6e-08 Score=96.41 Aligned_cols=94 Identities=20% Similarity=0.274 Sum_probs=73.3
Q ss_pred EEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhc
Q 046127 92 VLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKDL 171 (345)
Q Consensus 92 ~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~~l 171 (345)
+++.-.|.|||+|||||+|+++....+|| ...|. |+.-+||.+ +......+.+.|.++|+.|
T Consensus 7 vr~RFAPsPTG~LHiG~~rtAL~n~l~Ar--~~gG~---fiLRieDtD-------------~~R~~~~~~~~I~~~L~wl 68 (498)
T 2ja2_A 7 VRVRFCPSPTGTPHVGLVRTALFNWAYAR--HTGGT---FVFRIEDTD-------------AQRDSEESYLALLDALRWL 68 (498)
T ss_dssp CEEEECCCSSSSCBHHHHHHHHHHHHHHH--HHTCE---EEECBCCCC-------------TTTCCHHHHHHHHHHHHHH
T ss_pred eeEEECcCCCCCccHHHHHHHHHHHHHHH--HcCCE---EEEEECcCC-------------CcccChHHHHHHHHHHHHc
Confidence 56677789999999999999999999999 45563 444555552 2223446788999999999
Q ss_pred CcccCc---------cccCCChhhHHHHHHHHHHHHhCCCeee
Q 046127 172 DIAYDK---------FIRTTEPKHEAIVKEFYSSVLANGDIYK 205 (345)
Q Consensus 172 gI~~D~---------f~~T~~~~~~~~v~~~~~~L~~kG~iy~ 205 (345)
|+.+|. .++ .+.+.+.-++...+|.++|.+|.
T Consensus 69 Gl~wDegp~~gG~~~~~~--QS~r~~~y~~~~~~L~~~g~aY~ 109 (498)
T 2ja2_A 69 GLDWDEGPEVGGPYGPYR--QSQRAEIYRDVLARLLAAGEAYH 109 (498)
T ss_dssp TCCCSBBTTTBCTTCCCB--GGGCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCcCCCcCcCCCCCCee--eecCHHHHHHHHHHHHHcCCeEE
Confidence 999996 333 33577788889999999999994
|
| >4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A* | Back alignment and structure |
|---|
Probab=97.43 E-value=4.2e-05 Score=81.83 Aligned_cols=18 Identities=50% Similarity=1.104 Sum_probs=16.8
Q ss_pred CCCCcccccCCCCCCcccC
Q 046127 284 GLRDFSISRASVDWGIPVP 302 (345)
Q Consensus 284 gL~D~~ISR~~~~WGIpvP 302 (345)
.|+||||||| .+||+|||
T Consensus 436 rlrDW~iSRQ-RyWG~PIP 453 (880)
T 4arc_A 436 RLRDWGVSRQ-RYWGAPIP 453 (880)
T ss_dssp SCCCEECEES-CSSSCBCC
T ss_pred Ecccceeeee-eccCCcce
Confidence 5999999999 59999999
|
| >3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=95.76 E-value=0.034 Score=54.05 Aligned_cols=93 Identities=14% Similarity=0.052 Sum_probs=54.9
Q ss_pred CCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 046127 89 DPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLW 168 (345)
Q Consensus 89 ~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l 168 (345)
+++.|.++. -|+|.|||||..+++. ..+++...|++|++..+ |.|+.-. ..+.+++++ .++...+.+++
T Consensus 72 ~p~~i~sG~-~PTG~lHLGh~v~~~~---~~~lQ~~~g~~~~i~Ia-D~ha~~~-----~~~~~~e~i-~~~~~~~~~~~ 140 (392)
T 3jxe_A 72 RGFFLYTGR-GPSGPMHIGHIIPFFA---TKWLQEKFGVNLYIQIT-DDEKFLF-----KENLTFDDT-KRWAYDNILDI 140 (392)
T ss_dssp CCCEEEEEE-CCSSCCBHHHHHHHHH---HHHHHHHHCCEEEEEEC-HHHHHHH-----CSSCCHHHH-HHHHHHHHHHH
T ss_pred CCeEEEecc-CCCCchhHHHHHHHHH---HHHHHHhcCCceEEEec-chHHhhc-----CCCCCHHHH-HHHHHHHHHHH
Confidence 444444444 3569999999876642 23344447999988776 4442211 123566654 44455777788
Q ss_pred hhcCcccC---ccccCCChhhHHHHHH
Q 046127 169 KDLDIAYD---KFIRTTEPKHEAIVKE 192 (345)
Q Consensus 169 ~~lgI~~D---~f~~T~~~~~~~~v~~ 192 (345)
.++|++.+ .|....-+.|...+..
T Consensus 141 lA~GlDp~kt~i~~qS~~~~~~~~~~~ 167 (392)
T 3jxe_A 141 IAVGFDPDKTFIFQNSEFTKIYEMAIP 167 (392)
T ss_dssp HTTCCCTTSEEEEETTTSTHHHHHHHH
T ss_pred HHhCcCccceEEEECchhHHHHHHHHH
Confidence 89999987 2333333445555443
|
| >2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=95.75 E-value=0.039 Score=52.15 Aligned_cols=66 Identities=17% Similarity=0.185 Sum_probs=42.0
Q ss_pred CCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhcCcccC
Q 046127 99 YVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKDLDIAYD 176 (345)
Q Consensus 99 ypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~~lgI~~D 176 (345)
-|||+|||||+... -.+.+++ ..|+++++..|- .|+.-. . ..++++ +..+...+.+++.++|+++|
T Consensus 40 ~PTg~lHlG~l~~l---~~~~~lq-~~g~~~~~~i~D-~~a~~~-----d-~~~~~~-i~~~~~~~~~~~~a~Gldp~ 105 (323)
T 2cyb_A 40 EPSGEIHLGHMMTV---QKLMDLQ-EAGFEIIVLLAD-IHAYLN-----E-KGTFEE-IAEVADYNKKVFIALGLDES 105 (323)
T ss_dssp CCCSCCBHHHHHHH---HHHHHHH-HTTCEEEEEECH-HHHHHT-----T-CCCHHH-HHHHHHHHHHHHHHTTCCTT
T ss_pred CCCCcchHHHHHHH---HHHHHHH-HCCCcEEEEECC-ceeEcC-----C-CCCHHH-HHHHHHHHHHHHHHhCCCcc
Confidence 46799999996432 2444544 458888775542 121100 1 125554 56677889999999999987
|
| >3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A* | Back alignment and structure |
|---|
Probab=95.57 E-value=0.011 Score=55.94 Aligned_cols=65 Identities=12% Similarity=0.157 Sum_probs=42.8
Q ss_pred CCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhcCcccC
Q 046127 99 YVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKDLDIAYD 176 (345)
Q Consensus 99 ypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~~lgI~~D 176 (345)
-|||.|||||..+.+.. +.++++ |+++++..| |.|+.- ...+++++ .++...+..++.++|++.+
T Consensus 11 ~PTg~lHlG~~lg~l~~--~~~lQ~--g~~~~~~ia-D~ha~~-------~~~~~~~l-~~~~~~~~~~~lA~Gldp~ 75 (322)
T 3tzl_A 11 QPSGDLHIGNYFGAIKQ--MVDAQE--KSQMFMFIA-NYHAMT-------SSQDGEKL-KQNSLKAAAAFLSLGIDPQ 75 (322)
T ss_dssp CCSSCCBHHHHHHTHHH--HHHTTT--TSCCEEEEC-HHHHTT-------TCCCHHHH-HHHHHHHHHHHHHTTCCTT
T ss_pred CCCccccHHHHHHHHHH--HHHHhc--CCCEEEEEe-cCeeec-------CCCCHHHH-HHHHHHHHHHHHHcCCCcc
Confidence 46799999998765543 456655 999987665 444311 12245543 4455677788888999987
|
| >1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A | Back alignment and structure |
|---|
Probab=95.04 E-value=0.03 Score=53.13 Aligned_cols=64 Identities=14% Similarity=0.172 Sum_probs=41.6
Q ss_pred CCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhcCcccC
Q 046127 100 VNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKDLDIAYD 176 (345)
Q Consensus 100 pnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~~lgI~~D 176 (345)
|||.|||||..+++.. +.+++. |+++++..| |.|+.-. ..++++ +.++...+.+++.++|++++
T Consensus 10 PTG~lHlGn~vg~l~~--~~~lQ~--g~~~~~~Ia-D~ha~~~-------~~~~e~-i~~~~~~~~~~~la~Gldp~ 73 (328)
T 1i6k_A 10 PSGVITIGNYIGALRQ--FVELQH--EYNCYFCIV-DQHAITV-------WQDPHE-LRQNIRRLAALYLAVGIDPT 73 (328)
T ss_dssp CCSCCBHHHHHHTHHH--HHHHTT--TSEEEEEEC-HHHHTTS-------CCCHHH-HHHHHHHHHHHHHHTTCCTT
T ss_pred CCCcccHHHHHHHHHH--HHHHHc--CCcEEEEEe-CceeecC-------CCCHHH-HHHHHHHHHHHHHHhCCChh
Confidence 5599999998877632 224433 999877554 3232111 135654 44556688899999999987
|
| >3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A* | Back alignment and structure |
|---|
Probab=95.00 E-value=0.07 Score=51.51 Aligned_cols=77 Identities=16% Similarity=0.111 Sum_probs=49.2
Q ss_pred CCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 046127 88 ADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTL 167 (345)
Q Consensus 88 ~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~ 167 (345)
+++++|.++. -|+|.|||||..++. -.+.+...|++|++.. .|.|.. .-......+........+..+
T Consensus 68 gk~~~v~sG~-~PTG~lHLGhyv~~~----~~~~lq~~~~~~~~~I-aD~ha~------t~~~~~~~e~~r~~~~~~~~~ 135 (372)
T 3a04_A 68 GERVAVLTGF-MPSGKFHFGHKLTVD----QLIYLQKNGFKVFVAI-ADAEAF------AVRRIGREEAVRIAVEEYIAN 135 (372)
T ss_dssp TCCCEEEEEE-CCCSCCBHHHHHHHH----HHHHHHHTTCEEEEEE-CHHHHH------HTTCCCHHHHHHHHHHTTHHH
T ss_pred CCCCEEEeCc-CCCcHhHHHHHHHHH----HHHHHHhCCCeEEEEE-ecchhh------ccCCCCCHHHHHHHHHHHHHH
Confidence 4566666655 578999999976443 2344455699997655 344421 112233445556666777788
Q ss_pred HhhcCcccC
Q 046127 168 WKDLDIAYD 176 (345)
Q Consensus 168 l~~lgI~~D 176 (345)
+-++|++++
T Consensus 136 ~lA~GlDP~ 144 (372)
T 3a04_A 136 MIALGLDPK 144 (372)
T ss_dssp HHHHTCCTT
T ss_pred HHHcCCChH
Confidence 889999987
|
| >2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.91 E-value=0.064 Score=52.15 Aligned_cols=72 Identities=14% Similarity=0.153 Sum_probs=40.7
Q ss_pred CCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhcCcccCc
Q 046127 99 YVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKDLDIAYDK 177 (345)
Q Consensus 99 ypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~~lgI~~D~ 177 (345)
-|||.|||||.++++. +.++++ .|+++++..+- .|+.-.. ....-...+..+..+...+...|.++|+++|.
T Consensus 47 ~PTG~LHlG~~~~al~---~~~~~q-~g~~~ii~I~D-~ha~t~~--~~~~~e~~~~~~~~~~~~i~~~l~a~Gldp~k 118 (394)
T 2dlc_X 47 APTGRPHCGYFVPMTK---LADFLK-AGCEVTVLLAD-LHAFLDN--MKAPLEVVNYRAKYYELTIKAILRSINVPIEK 118 (394)
T ss_dssp CCCSCCBGGGHHHHHH---HHHHHH-TTCEEEEEECH-HHHHHTT--TSSCTTHHHHHHHHHHHHHHHHHHHTTCCCTT
T ss_pred CCCCCccHHHHHHHHH---HHHHHH-cCCcEEEEEcC-CccccCC--CCCcHHHHHHHHHHHHHHHHHHHHHcCCChhH
Confidence 3479999999877665 344444 68888765542 1210000 00000011233344556677788999999883
|
| >3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=94.81 E-value=0.097 Score=50.76 Aligned_cols=77 Identities=13% Similarity=0.079 Sum_probs=48.7
Q ss_pred CCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 046127 88 ADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTL 167 (345)
Q Consensus 88 ~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~ 167 (345)
++++.|.++. -|+|+|||||..++ ..+.++++..|..|.++.+-+ + +......+++++. ++...+.++
T Consensus 80 ~~~~~vysG~-~PTG~lHLGh~v~~---~~~~~lQ~~~g~~v~i~I~D~-~------a~~~r~~~~e~i~-~~~~~~~~~ 147 (386)
T 3hzr_A 80 KKPTFIFIQK-YPQKEVALEEYITL---EFARYLQDAFNIQVIIQILDD-I------KVLNREATINEAS-KMSNDLMKY 147 (386)
T ss_dssp TCCEEEEEEE-CCCSSCBGGGHHHH---HHHHHHHHHHCCEEEEEECHH-H------HHHTTSCCHHHHH-HHHHHHHHH
T ss_pred CCCeEEEecc-CCCCCccHHHHHHH---HHHHHHHHhcCCeEEEEeCch-H------HhhcCCCCHHHHH-HHHHHHHHH
Confidence 4556666655 57899999996554 344456666688887773321 1 1112226777644 444577788
Q ss_pred HhhcCcccC
Q 046127 168 WKDLDIAYD 176 (345)
Q Consensus 168 l~~lgI~~D 176 (345)
+-++|++.+
T Consensus 148 ~lA~GlDp~ 156 (386)
T 3hzr_A 148 ILAFGFNED 156 (386)
T ss_dssp HHHTCCCGG
T ss_pred HHHcCCCCc
Confidence 889999887
|
| >1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A* | Back alignment and structure |
|---|
Probab=94.79 E-value=0.084 Score=50.93 Aligned_cols=66 Identities=17% Similarity=0.196 Sum_probs=38.8
Q ss_pred CCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHH---HHHHHHH-HHHHHhhcCccc
Q 046127 100 VNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEH---CDVVSQA-YKTLWKDLDIAY 175 (345)
Q Consensus 100 pnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~---~~~~~~~-~~~~l~~lgI~~ 175 (345)
|||.|||||..+++. +.++++ .|+++++..|- .|+.-. .-.++.++ ...+.+. +...|.++|+++
T Consensus 44 PTG~lHlG~~~~~l~---~~~~~q-~g~~~i~~I~D-~ha~t~------~~~~~~~l~~~~~~~~~~~i~~~lla~Gldp 112 (372)
T 1n3l_A 44 TTGKPHVAYFVPMSK---IADFLK-AGCEVTILFAD-LHAYLD------NMKAPWELLELRVSYYENVIKAMLESIGVPL 112 (372)
T ss_dssp CSSCCBGGGHHHHHH---HHHHHH-TTCEEEEEECH-HHHHHT------TTTSCHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred CCCcccHHHHHHHHH---HHHHHH-CCCCEEEEEcC-CceeeC------CCCCHHHHHHHHHHHHHHHHHHHHHHcCCCh
Confidence 679999999877665 455555 68888775542 111000 00123332 3334444 555678899998
Q ss_pred C
Q 046127 176 D 176 (345)
Q Consensus 176 D 176 (345)
+
T Consensus 113 ~ 113 (372)
T 1n3l_A 113 E 113 (372)
T ss_dssp T
T ss_pred h
Confidence 7
|
| >2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=94.34 E-value=0.096 Score=49.92 Aligned_cols=73 Identities=11% Similarity=0.106 Sum_probs=44.4
Q ss_pred EEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHhh
Q 046127 91 FVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKD 170 (345)
Q Consensus 91 ~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~~ 170 (345)
.+.+... |||.|||||..+++. -+.++ ...|++|++.. .|.|+.-. . ..+|++ ..+......+++.+
T Consensus 14 ~v~~G~~--PTG~lHLGn~~g~l~--~~~~l-Q~~G~~~~~~I-aD~ha~t~----~--~~dp~~-~~~~~~~~~~~~lA 80 (340)
T 2g36_A 14 RILSGMR--PTGKLHIGHLVGALE--NWVKL-QEEGNECFYFV-ADWHALTT----H--YDDVSK-LKEYTRDLVRGFLA 80 (340)
T ss_dssp EEEEEEC--CCSSCBHHHHHTHHH--HHHHH-HHTTCEEEEEE-CHHHHHHH----H--TTCCTT-HHHHHHHHHHHHHH
T ss_pred eEEEeeC--CCCcccHHhHHHHHH--HHHHH-HHCCCCEEEEE-ecceeecC----C--CCCHHH-HHHHHHHHHHHHHH
Confidence 4444454 559999999887653 33333 45799998876 33343221 1 234443 33445556667888
Q ss_pred cCcccC
Q 046127 171 LDIAYD 176 (345)
Q Consensus 171 lgI~~D 176 (345)
+|++++
T Consensus 81 ~Gldp~ 86 (340)
T 2g36_A 81 CGIDPE 86 (340)
T ss_dssp TTCCTT
T ss_pred hCCChh
Confidence 999987
|
| >2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=94.23 E-value=0.12 Score=49.80 Aligned_cols=68 Identities=7% Similarity=0.050 Sum_probs=42.5
Q ss_pred CCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhcCcccC
Q 046127 99 YVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKDLDIAYD 176 (345)
Q Consensus 99 ypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~~lgI~~D 176 (345)
-|||.||||| . +..-.+.++++ .|+++++..| |.|+.-. ...|.+++++. ++...+.+++.++|++.+
T Consensus 43 ~PTg~lHlG~-l--~~l~~~~~lQ~-~G~~~~~~ia-D~~a~~~----~ps~~~~e~i~-~~~~~~~~~~la~G~dp~ 110 (364)
T 2cya_A 43 EPSGVAHIGW-L--VWMYKVKDLVE-AGVDFSVLEA-TWHAYIN----DKLGGDMDLIR-AAARIVRRVMEAAGVPVE 110 (364)
T ss_dssp CCCSSCBTHH-H--HHHHHHHHHHH-TTCEEEEEEC-HHHHHHT----TGGGGCHHHHH-HHHHHHHHHHHHTTCCGG
T ss_pred CCCCCccHhH-H--HHHHHHHHHHH-CCCCEEEEEe-CcchhhC----CCCCCCHHHHH-HHHHHHHHHHHHhCCCcc
Confidence 3569999999 3 33344555554 5999887665 3332111 11234565544 445678889999999987
|
| >2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A* | Back alignment and structure |
|---|
Probab=94.00 E-value=0.2 Score=47.16 Aligned_cols=67 Identities=13% Similarity=0.278 Sum_probs=41.2
Q ss_pred CCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhcCcccCccc
Q 046127 100 VNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKDLDIAYDKFI 179 (345)
Q Consensus 100 pnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~~lgI~~D~f~ 179 (345)
|||.||||| . +..-.+.++++ .|+++++..|- .|+.-. . ..++++ +.++...+.+++.++|++ ..|+
T Consensus 37 PTg~lHlGh-l--~~l~~~~~lQ~-~g~~~~~~i~D-~~a~~~-----~-~~~~e~-i~~~~~~~~~~~~a~G~d-~~~~ 103 (314)
T 2zp1_A 37 PSGKIHLGH-Y--LQIKKMIDLQN-AGFDIIILLAD-LAAYLN-----Q-KGELDE-IRKIGDYNKKVFEAMGLK-AKYV 103 (314)
T ss_dssp CCSSCBHHH-H--HHHHHHHHHHH-TTEEEEEEECH-HHHHHT-----T-CCCHHH-HHHHHHHHHHHHHHTTCC-CEEE
T ss_pred CCCCcchhh-H--HHHHHHHHHHH-CCCCEEEEEec-ceEecC-----C-CCCHHH-HHHHHHHHHHHHHhcCCC-eEEE
Confidence 569999999 3 23344455554 58998876642 222110 1 124554 455568899999999998 5454
|
| >3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=93.85 E-value=0.088 Score=51.08 Aligned_cols=83 Identities=13% Similarity=0.177 Sum_probs=49.9
Q ss_pred EEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhcC
Q 046127 93 LTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKDLD 172 (345)
Q Consensus 93 I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~~lg 172 (345)
|.++. -|+|.|||||..+++.. +.+++ .|++|++..+ |.|..- ...+++++ .++...+..++.+.|
T Consensus 38 i~sG~-~PTG~lHLGhyvGal~~--~~~LQ--~~~~~~~~Ia-D~hAlt-------~~~~~~~l-r~~~~~~aa~~lA~G 103 (388)
T 3prh_A 38 IFSGI-QPSGSVTLGNYIGAMKQ--FVELQ--HDYNSYFCIV-DQHAIT-------VPQDRLEL-RKNIRNLAALYLAVG 103 (388)
T ss_dssp EEEEE-CCCSCCBHHHHHHTHHH--HHHTT--TTSEEEEEEC-HHHHTT-------SCCCHHHH-HHHHHHHHHHHHHTT
T ss_pred EEEee-CCCCcchHHHHHHHHHH--HHHHH--ccCcEEEEEe-cceeee-------cCCCHHHH-HHHHHHHHHHHHHhC
Confidence 44443 56799999998776542 22333 3999877653 444321 13466654 444557788888999
Q ss_pred cccC---ccccCCChhhHHH
Q 046127 173 IAYD---KFIRTTEPKHEAI 189 (345)
Q Consensus 173 I~~D---~f~~T~~~~~~~~ 189 (345)
++.+ .|....-+.|.+.
T Consensus 104 lDp~kt~if~qS~v~~~~el 123 (388)
T 3prh_A 104 LDPEKATLFIQSEVPAHAQA 123 (388)
T ss_dssp CCTTTEEEEEGGGSTHHHHH
T ss_pred CChhHeEEEecccccchHHH
Confidence 9987 3333333445443
|
| >3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803} | Back alignment and structure |
|---|
Probab=93.78 E-value=0.3 Score=48.26 Aligned_cols=78 Identities=13% Similarity=0.014 Sum_probs=49.1
Q ss_pred CCCEEEEccCCCCC-CcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 046127 88 ADPFVLTTPLYYVN-APPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKT 166 (345)
Q Consensus 88 ~~~~~I~~~~Pypn-G~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~ 166 (345)
++++.|.++. -|| |.|||||..++ ..+.+++..-|..+.+.. |++ .....+...+++++ .++...+.+
T Consensus 89 g~p~~vytG~-dPTagsLHLGH~v~~---~~l~~lQ~~~g~~v~I~I-----gD~-~a~~~r~~lt~E~I-~~n~~~~~~ 157 (451)
T 3foc_A 89 GHPIYIYTGR-GPSSGALHLGHLLPF---IFTKYLQDAFKCYVVIQI-----TDD-EKFLRNRSLSYAEV-DSYTRENIK 157 (451)
T ss_dssp TCCEEEEEEE-CCCSSCCBHHHHHHH---HHHHHHHHHHTCEEEEEE-----CHH-HHHHHCTTCCHHHH-HHHHHHHHH
T ss_pred CCCeEEEecC-CCCCCCccHHHHHHH---HHHHHHHHccCceEEEEe-----eCc-HHhhcccCCCHHHH-HHHHHHHHH
Confidence 4567777666 577 88999996544 344556666577777653 333 11112235677654 445557778
Q ss_pred HHhhcCcccC
Q 046127 167 LWKDLDIAYD 176 (345)
Q Consensus 167 ~l~~lgI~~D 176 (345)
++-++|++.+
T Consensus 158 ~~lA~GlDpe 167 (451)
T 3foc_A 158 DIIACGFDPD 167 (451)
T ss_dssp HHHTTTCCGG
T ss_pred HHHHcCCCCC
Confidence 8888998876
|
| >1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A* | Back alignment and structure |
|---|
Probab=93.68 E-value=0.088 Score=50.41 Aligned_cols=74 Identities=15% Similarity=0.096 Sum_probs=44.5
Q ss_pred CCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 046127 89 DPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLW 168 (345)
Q Consensus 89 ~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l 168 (345)
+..+.+..- |||.|||||..+++. -+.++++. +++++.. .|.|+.-.. ..+++++ .++...+.+++
T Consensus 22 ~~~vysG~~--PTG~lHLGn~~g~l~--~~~~lQ~~--~~~~~~I-aD~ha~~~~------~~~~e~i-~~~~~~~~~~~ 87 (351)
T 1yi8_B 22 RPRVLTGDR--PTGALHLGHLAGSLQ--NRVRLQDE--AELFVLL-ADVQALTDH------FDRPEQV-RENVLAVALDY 87 (351)
T ss_dssp CSEEEEEEC--CSSCCBHHHHHHTHH--HHHHHTSS--SEEEEEE-CHHHHHHHH------TTCHHHH-HHHHHHHHHHH
T ss_pred CcEEEEeeC--CCCCccHHHHHHHHH--HHHHHHHh--CCeEEEE-ecchhhcCC------CCCHHHH-HHHHHHHHHHH
Confidence 344444444 469999999887652 22334333 7776554 344443221 3566654 44555677888
Q ss_pred hhcCcccC
Q 046127 169 KDLDIAYD 176 (345)
Q Consensus 169 ~~lgI~~D 176 (345)
.++|++.+
T Consensus 88 la~Gldp~ 95 (351)
T 1yi8_B 88 LAAGLDPQ 95 (351)
T ss_dssp HHHTCCTT
T ss_pred HHhCCChh
Confidence 89999987
|
| >3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=93.49 E-value=0.096 Score=50.57 Aligned_cols=69 Identities=12% Similarity=0.178 Sum_probs=41.5
Q ss_pred CCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhcCcccC
Q 046127 99 YVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKDLDIAYD 176 (345)
Q Consensus 99 ypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~~lgI~~D 176 (345)
-|+|.|||||. .+..-.+.+++ ..|++|++..| |.|+.- ....+.+++++ ..+...+.+.+.++|++.+
T Consensus 64 ~PTg~lHlG~g--vl~~~~~~~lQ-~~G~~~~~lIa-D~ha~i----~d~~~~~~~~i-~~~~~~~~~~~~a~G~dp~ 132 (373)
T 3vgj_A 64 EPSGRMHIAQG--LLKSIIVNKLT-SNGCTFIFWIA-DWFAHL----NNKMSGDLKKI-KKVGSYFIEVWKSCGMNME 132 (373)
T ss_dssp CCCSSCBHHHH--HHHHHHHHHHH-TTTCEEEEEEC-HHHHHH----TTGGGGCHHHH-HHHHHHHHHHHHHTTCCST
T ss_pred CCCCCceehhh--HHHHHHHHHHH-HCCCcEEEEEe-cceeEe----cCCCCCCHHHH-HHHHHHHHHHHHHcCCChh
Confidence 35689999992 22222355554 46999888765 434321 01223445443 4445666788999999987
|
| >1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A | Back alignment and structure |
|---|
Probab=93.38 E-value=0.13 Score=51.20 Aligned_cols=77 Identities=12% Similarity=0.018 Sum_probs=49.0
Q ss_pred CCCEEEEccCCCCC-CcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 046127 88 ADPFVLTTPLYYVN-APPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKT 166 (345)
Q Consensus 88 ~~~~~I~~~~Pypn-G~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~ 166 (345)
++++.|.++. -|| |.|||||..+++. +.+++...|+++++..|-. |+.-- . ..++++ +.++...+..
T Consensus 153 ~~~~~vy~G~-dPTag~LHLGh~v~~~~---~~~lQ~~~g~~~iilI~D~-~a~ig----d--~lt~e~-i~~n~~~~~~ 220 (477)
T 1r6t_A 153 KKPFYLYTGR-GPSSEAMHVGHLIPFIF---TKWLQDVFNVPLVIQMTDD-EKYLW----K--DLTLDQ-AYGDAVENAK 220 (477)
T ss_dssp TCCEEEEEEE-CCCTTCCBGGGHHHHHH---HHHHHHHHTCCEEEEECHH-HHHHH----S--SCCHHH-HHHHHHHHHH
T ss_pred CCCcEEEEcc-cCCCCCccHHHHHHHHH---HHHHHHHhCCcEEEEEecc-eeeec----C--CCCHHH-HHHHHHHHHH
Confidence 4567766666 577 8999999887652 3355555799987766532 21111 0 356655 4455555677
Q ss_pred HHhhcCcccC
Q 046127 167 LWKDLDIAYD 176 (345)
Q Consensus 167 ~l~~lgI~~D 176 (345)
++-++|++.+
T Consensus 221 ~~lA~GlDp~ 230 (477)
T 1r6t_A 221 DIIACGFDIN 230 (477)
T ss_dssp HHHTTCCCTT
T ss_pred HHHHhCCCCC
Confidence 7888998876
|
| >2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=93.37 E-value=0.16 Score=48.25 Aligned_cols=67 Identities=10% Similarity=0.012 Sum_probs=40.6
Q ss_pred CCCcCchhHHHHHHHHHHHHHHHHHcC-CeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhcCcccC
Q 046127 100 VNAPPHMGSAYTTIAADAIARFQRLLG-KKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKDLDIAYD 176 (345)
Q Consensus 100 pnG~LHIGHar~~i~~DvlaR~lr~~G-~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~~lgI~~D 176 (345)
|||+|||||..+++ --+.++++ .| ++|++..|- .|+.-. .+ +.+++. ..++...+..++.++|++.+
T Consensus 10 PTg~lHlGh~~g~l--~~~~~lQ~-~G~~~~~~~IaD-~~a~~~----~~-~~~~~~-i~~~~~~~~~~~la~Gldp~ 77 (337)
T 2el7_A 10 PSGEIHIGNYLGAI--KQWVAIGE-KLGRDAFFCIVD-YHALTN----PL-AYDPST-LAQRTFEAALVNIAAGLDPE 77 (337)
T ss_dssp SCSCCBHHHHHTHH--HHHHHHHH-HHGGGEEEEECG-GGGGGS----TT-TSCHHH-HHHHHHHHHHHHHHHTCCTT
T ss_pred CCCcccHHHHHHHH--HHHHHHHh-cCCCCEEEEEeC-ceeecC----CC-CCCHHH-HHHHHHHHHHHHHHhCCChh
Confidence 56999999988775 23345554 46 888765542 233211 00 244543 44455566778888999987
|
| >3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0 | Back alignment and structure |
|---|
Probab=93.17 E-value=0.29 Score=47.52 Aligned_cols=78 Identities=9% Similarity=-0.029 Sum_probs=47.6
Q ss_pred CCCEEEEccCCCCC-CcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 046127 88 ADPFVLTTPLYYVN-APPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKT 166 (345)
Q Consensus 88 ~~~~~I~~~~Pypn-G~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~ 166 (345)
++++.|.++. -|+ |.|||||..+++ .+.++++.-|..|.+..| ++- ........+++++ .++...+.+
T Consensus 72 g~~~~vy~G~-~PTa~~lHlGh~v~~~---~~~~lQ~~~~~~v~i~I~-----D~~-~~~~r~~~~~e~i-~~~~~~~~~ 140 (393)
T 3hv0_A 72 GELFYLYTGR-GPSSESLHVGHLVPFL---FTKYLQDTFKVPLVIQLT-----DDE-KFIFKSNLTLEET-HNYAYENMK 140 (393)
T ss_dssp TCCCEEEEEE-CCSSSSCBSTTHHHHH---HHHHHHHHHCCCEEEEEC-----HHH-HHHHCTTCCHHHH-HHHHHHHHH
T ss_pred CCCeEEEeCC-CCCCCCccHHHHHHHH---HHHHHHHhcCCCeEeecc-----ChH-HHhhccCCCHHHH-HHHHHHHHH
Confidence 3445555554 467 689999965444 455677766777766433 221 1112235676654 445557778
Q ss_pred HHhhcCcccC
Q 046127 167 LWKDLDIAYD 176 (345)
Q Consensus 167 ~l~~lgI~~D 176 (345)
++.++|++.+
T Consensus 141 ~~lA~GlDp~ 150 (393)
T 3hv0_A 141 DIIACGFDPE 150 (393)
T ss_dssp HHHTTCCCTT
T ss_pred HHHHcCCCCc
Confidence 8888999876
|
| >3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor} | Back alignment and structure |
|---|
Probab=93.12 E-value=0.12 Score=49.36 Aligned_cols=71 Identities=10% Similarity=0.080 Sum_probs=44.8
Q ss_pred EEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHhh
Q 046127 91 FVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKD 170 (345)
Q Consensus 91 ~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~~ 170 (345)
.+.+.. -|+|+|||||..+++. -+.+++. |+++++..+ |.|..- ...++++ ..++...+..++.+
T Consensus 8 ~v~sG~--~PTG~lHLGhy~g~l~--~~~~lQ~--~~~~~~~ia-D~ha~~-------~~~~~~~-~~~~~~~~~~~~lA 72 (341)
T 3sz3_A 8 IVLSGV--QPSGELSIGNYLGALR--QWQQMQD--DYDCQYCVV-DLHAIT-------VRQDPQA-LHEATLDALAICLA 72 (341)
T ss_dssp EEEEEE--CSSSCCBHHHHHHTGG--GHHHHHH--HSEEEEEEC-HHHHTT-------SCCCHHH-HHHHHHHHHHHHHH
T ss_pred EEEeCc--CCCCcccHHHHHHHHH--HHHHHHh--cCeEEEEEe-cceeEc-------CCCCHHH-HHHHHHHHHHHHHH
Confidence 344444 3669999999887662 2345554 588776544 444321 1246654 45555678888899
Q ss_pred cCcccC
Q 046127 171 LDIAYD 176 (345)
Q Consensus 171 lgI~~D 176 (345)
.|++.+
T Consensus 73 ~GlDp~ 78 (341)
T 3sz3_A 73 VGVDPK 78 (341)
T ss_dssp TTCCTT
T ss_pred cCCChh
Confidence 999987
|
| >2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A* | Back alignment and structure |
|---|
Probab=92.90 E-value=0.18 Score=49.55 Aligned_cols=77 Identities=10% Similarity=0.063 Sum_probs=47.8
Q ss_pred CCEEEEccCCCCC-CcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 046127 89 DPFVLTTPLYYVN-APPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTL 167 (345)
Q Consensus 89 ~~~~I~~~~Pypn-G~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~ 167 (345)
+++.|.++. -|| |.|||||..+.+. +.+++...|+++++..| |.|+.- -....+++. +.++...+..+
T Consensus 101 ~~~~vy~G~-dPTag~LHLGh~v~~~~---l~~lQ~~~g~~~i~lI~-D~ta~l-----~~~~~t~e~-i~~~~~~~~~~ 169 (432)
T 2ip1_A 101 KPFFLYTGR-GPSSDSMHLGHMIPFVF---TKWLQEVFDVPLVIELT-DDEKFL-----FKHKLTIND-VKNFARENAKD 169 (432)
T ss_dssp CCCEEEEEE-CCCSSCCBGGGHHHHHH---HHHHHHHHTCCEEEEEC-HHHHHH-----HCTTCCHHH-HHHHHHHHHHH
T ss_pred CCeEEEEee-cCCCCCccHHHHHHHHH---HHHHHHHcCCeEEEEEe-ccccee-----CCCCCCHHH-HHHHHHHHHHH
Confidence 445555554 467 8999999876542 44566557998887776 322211 011255554 45555566777
Q ss_pred HhhcCcccC
Q 046127 168 WKDLDIAYD 176 (345)
Q Consensus 168 l~~lgI~~D 176 (345)
+.++|++.+
T Consensus 170 ~lA~GlDp~ 178 (432)
T 2ip1_A 170 IIAVGFDPK 178 (432)
T ss_dssp HHTTTCCGG
T ss_pred HHHhCCCCC
Confidence 888998876
|
| >1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A | Back alignment and structure |
|---|
Probab=92.75 E-value=0.19 Score=49.51 Aligned_cols=77 Identities=10% Similarity=0.009 Sum_probs=48.7
Q ss_pred CCCEEEEccCCCCC-CcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 046127 88 ADPFVLTTPLYYVN-APPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKT 166 (345)
Q Consensus 88 ~~~~~I~~~~Pypn-G~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~ 166 (345)
++++.|.++. -|| |.|||||..+.+. +.+++...|+++++..|- .++.-- . ..++++ +.++...+..
T Consensus 106 ~~~~~vy~G~-dPTag~LHLGh~v~~~~---~~~lQ~~~G~~~iilIgD-~ta~ig----d--~lt~e~-i~~n~~~~~~ 173 (437)
T 1r6u_A 106 KKPFYLYTGR-GPSSEAMHVGHLIPFIF---TKWLQDVFNVPLVIQMTD-DEKYLW----K--DLTLDQ-AYGDAVENAK 173 (437)
T ss_dssp TCCEEEEEEE-CCCSSCCBHHHHHHHHH---HHHHHHHHTCCEEEEECH-HHHHHH----S--SCCHHH-HHHHHHHHHH
T ss_pred CCCcEEEEcc-cCCCCCccHHHHHHHHH---HHHHHHHhCCcEEEEEec-ceeeec----C--CCCHHH-HHHHHHHHHH
Confidence 4566666665 577 8999999886552 445555579988776653 222111 0 456655 4445555677
Q ss_pred HHhhcCcccC
Q 046127 167 LWKDLDIAYD 176 (345)
Q Consensus 167 ~l~~lgI~~D 176 (345)
++.++|++.+
T Consensus 174 ~~lA~GlDp~ 183 (437)
T 1r6u_A 174 DIIACGFDIN 183 (437)
T ss_dssp HHHTTTCCGG
T ss_pred HHHHhCCCcc
Confidence 7888898876
|
| >3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A* | Back alignment and structure |
|---|
Probab=92.72 E-value=0.19 Score=52.26 Aligned_cols=77 Identities=13% Similarity=0.160 Sum_probs=45.7
Q ss_pred CEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Q 046127 90 PFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWK 169 (345)
Q Consensus 90 ~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~ 169 (345)
++.|.++. -|||.|||||. .+..-.+.+++ ..|++|++..| |.|+.-. ...+.++++ +..+...+.+++.
T Consensus 40 ~~~vy~G~-~PTg~lHLG~~--v~~~~~~~~lQ-~~G~~~~~lIa-D~ha~~~----d~~~~~~e~-i~~~~~~~~~~~l 109 (690)
T 3p0j_A 40 LIRCYDGF-EPSGRMHIAQG--IFKAVNVNKCT-AAGCEFVFWVA-DWFALMN----DKVGGELEK-IRIVGRYLIEVWK 109 (690)
T ss_dssp TEEEEEEE-CCCSCCBHHHH--HHHHHHHHHHH-HTTEEEEEEEC-CGGGGGG----CTTTTHHHH-HHHHHHHHHHHHH
T ss_pred CceEEeee-cCCCcchhHhh--HHHHHHHHHHH-HCCCcEEEEEe-eeEEEec----CCCcchHHH-HHHHHHHHHHHHH
Confidence 44444444 57799999992 12122244555 46999988766 5554311 112334444 3445566778899
Q ss_pred hcCcccC
Q 046127 170 DLDIAYD 176 (345)
Q Consensus 170 ~lgI~~D 176 (345)
++|++.+
T Consensus 110 A~GlDp~ 116 (690)
T 3p0j_A 110 AAGMDMD 116 (690)
T ss_dssp HTTCCGG
T ss_pred HcCCChH
Confidence 9999887
|
| >3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0 | Back alignment and structure |
|---|
Probab=92.65 E-value=0.38 Score=46.69 Aligned_cols=77 Identities=13% Similarity=0.021 Sum_probs=49.2
Q ss_pred CCCEEEEccCCCCCC-cCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 046127 88 ADPFVLTTPLYYVNA-PPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKT 166 (345)
Q Consensus 88 ~~~~~I~~~~PypnG-~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~ 166 (345)
++++.|.++. -|+| .|||||..++ ..+.++++.-|..|.++.|-+. ++.....+++++. ++...+.+
T Consensus 76 ~~~~~vy~G~-~PTg~~lHLGh~v~~---~~~~~lQ~~~~~~v~i~I~D~~-------~~l~~~~~~e~i~-~~~~~~~~ 143 (395)
T 3i05_A 76 GQPFYLYTGR-GPSSESMHMGHLIPF---MFTKWLQDSFRVPLVIQMTDDE-------KFYFRNIPMEQVE-AMTTENIK 143 (395)
T ss_dssp TCCEEEEEEE-CCCSSCCBGGGSHHH---HHHHHHHHHHTCCEEEEECHHH-------HHHHSCCCHHHHH-HHHHHHHH
T ss_pred CCCeEEEEee-cCCCccchHHHHHHH---HHHHHHHHhcCCcEEEEEcchH-------HHhcCCCCHHHHH-HHHHHHHH
Confidence 4556666665 5789 6999997543 4555566666887777643222 1222336776644 45557778
Q ss_pred HHhhcCcccC
Q 046127 167 LWKDLDIAYD 176 (345)
Q Consensus 167 ~l~~lgI~~D 176 (345)
++.++|++.+
T Consensus 144 ~~lA~GlDp~ 153 (395)
T 3i05_A 144 DIIAMGFDPE 153 (395)
T ss_dssp HHHTTTCCTT
T ss_pred HHHHcCCCCC
Confidence 8888998876
|
| >2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=92.04 E-value=0.27 Score=47.39 Aligned_cols=70 Identities=17% Similarity=0.118 Sum_probs=39.9
Q ss_pred CCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHH----HHHHHHHHHhhcCcc
Q 046127 99 YVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDV----VSQAYKTLWKDLDIA 174 (345)
Q Consensus 99 ypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~----~~~~~~~~l~~lgI~ 174 (345)
-|||.|||||... ..-.+.++++ .|+++++..|- .|+.- ....|.+++++... +...+.+++.++|++
T Consensus 41 ~PTg~lHlG~yl~--~l~~~~~lQ~-~G~~~~~~iaD-~ha~~----~~~~g~~~e~i~~~~~~~~~~~~~~~~la~G~d 112 (375)
T 2cyc_A 41 EISGYIHLGTGLM--AGAKIADFQK-AGIKTRVFLAD-WHSWI----NDKLGGDLEVIQEVALKYFKVGMEKSIEVMGGD 112 (375)
T ss_dssp CCCSCCBHHHHHH--HHHHHHHHHH-TTCBCEEEECH-HHHHH----TTGGGGCHHHHHHHHHHTHHHHHHHHHHHTTCC
T ss_pred CCCCCcCchHHHH--HHHHHHHHHH-CCCcEEEEecC-cEEEc----CCCCCCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3569999999432 2234455554 59988876542 22211 11223455544332 333344889999998
Q ss_pred cC
Q 046127 175 YD 176 (345)
Q Consensus 175 ~D 176 (345)
.+
T Consensus 113 p~ 114 (375)
T 2cyc_A 113 PK 114 (375)
T ss_dssp GG
T ss_pred cc
Confidence 87
|
| >1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A* | Back alignment and structure |
|---|
Probab=91.62 E-value=0.13 Score=50.37 Aligned_cols=71 Identities=15% Similarity=0.208 Sum_probs=40.7
Q ss_pred CCCCc-CchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCC--cChHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhcCccc
Q 046127 99 YVNAP-PHMGSAYTTIAADAIARFQRLLGKKVIFITGTDE--HGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKDLDIAY 175 (345)
Q Consensus 99 ypnG~-LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~--~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~~lgI~~ 175 (345)
-|||+ |||||..+ .-.+.+++ ..||++++..|-.+ .|.|--...++.-.+++++ .++...+++++.++ +++
T Consensus 40 dPTg~sLHlGh~v~---l~~~~~lQ-~~G~~~~~lIgd~ta~igdp~gk~~~R~~l~~e~i-~~n~~~~~~~~~~~-ld~ 113 (420)
T 1jil_A 40 DPTADSLHIGHLLP---FLTLRRFQ-EHGHRPIVLIGGGTGMIGDPSGKSEERVLQTEEQV-DKNIEGISKQMHNI-FEF 113 (420)
T ss_dssp CCSSSSCBHHHHHH---HHHHHHHH-HTTCEEEEEECTTGGGTCCCTTCSSCCCCCCHHHH-HHHHHHHHHHHHHH-SCC
T ss_pred CCCCCCccHHHHHH---HHHHHHHH-HCCCcEEEEEcCceeEecCCCccccccccCCHHHH-HHHHHHHHHHHHHH-hCC
Confidence 46699 99999653 34456665 46999988765322 2222111111222356654 45557777777666 655
|
| >2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus} | Back alignment and structure |
|---|
Probab=91.53 E-value=0.55 Score=44.75 Aligned_cols=75 Identities=11% Similarity=0.088 Sum_probs=44.5
Q ss_pred EEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHhh
Q 046127 91 FVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKD 170 (345)
Q Consensus 91 ~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~~ 170 (345)
.+.+..- |+|.|||||.. +..-.+.++++ .|+++++..|- .|+.- ....+.++++ +.++...+.+++.+
T Consensus 42 ~vy~G~~--PTg~lHlGhyl--~~l~~~~~lQ~-~G~~~~~~i~D-~~a~~----~~~~~~~~e~-i~~~~~~~~~~~la 110 (348)
T 2j5b_A 42 TAYNGFE--PSGRIHIAQAL--ITVMNTNNMIE-CGGQMIIYIAD-WFAKM----NLKMNGDINK-IRELGRYFIEVFKA 110 (348)
T ss_dssp EEEEEEC--CCSSCBHHHHH--HHHHHHHHHHH-TTEEEEEEECH-HHHHH----TTGGGGCHHH-HHHHHHHHHHHHHH
T ss_pred EEEeccC--CCCCCchhHHH--HHHHHHHHHHH-cCCcEEEEecc-chhhh----CCCCCCCHHH-HHHHHHHHHHHHHH
Confidence 3444443 55999999932 22344556654 59998876542 23211 1122345554 45566777888889
Q ss_pred cCcccC
Q 046127 171 LDIAYD 176 (345)
Q Consensus 171 lgI~~D 176 (345)
+|++.+
T Consensus 111 ~Gldp~ 116 (348)
T 2j5b_A 111 CGINLD 116 (348)
T ss_dssp TTCCGG
T ss_pred hcCCcc
Confidence 999987
|
| >3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=91.45 E-value=0.72 Score=44.91 Aligned_cols=77 Identities=12% Similarity=0.030 Sum_probs=48.4
Q ss_pred CCCEEEEccCCCCCC-cCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 046127 88 ADPFVLTTPLYYVNA-PPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKT 166 (345)
Q Consensus 88 ~~~~~I~~~~PypnG-~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~ 166 (345)
++++.|.++. -|+| .|||||..++ ..+.++++.-|..+.+..| |.|. +. ....+++++ .++...+.+
T Consensus 99 ~~p~~vy~G~-~PTg~~lHLGh~v~~---~~~~~lQ~~~g~~~~i~Ia-D~~a--~l----~~~~~~e~i-~~~~~~~~~ 166 (406)
T 3tze_A 99 NRPFYLYTGR-GPSSKTMHIGHTIPF---LLCKYMQDAFKIRLVIQIT-DDEK--FL----WKSMRLEDA-MAYGRENIK 166 (406)
T ss_dssp TCCEEEEEEE-CCCSSCCBGGGHHHH---HHHHHHHHHHTCCEEEEEC-HHHH--HH----HSSCCHHHH-HHHHHHHHH
T ss_pred CCCeEEEEee-CCCCCcccHHHHHHH---HHHHHHHHhcCCcEEEEee-ChHH--Hc----CCCCCHHHH-HHHHHHHHH
Confidence 4566666665 5788 7999996554 3444466665887776533 3331 11 123566654 445567778
Q ss_pred HHhhcCcccC
Q 046127 167 LWKDLDIAYD 176 (345)
Q Consensus 167 ~l~~lgI~~D 176 (345)
++-++|++.+
T Consensus 167 ~~lA~GlDp~ 176 (406)
T 3tze_A 167 DIVTLGFDPK 176 (406)
T ss_dssp HHHTTTCCGG
T ss_pred HHHHcCCCcc
Confidence 8889999876
|
| >3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A* | Back alignment and structure |
|---|
Probab=90.85 E-value=1.3 Score=45.93 Aligned_cols=68 Identities=12% Similarity=0.004 Sum_probs=44.3
Q ss_pred CCCcCchhHHHHHHHHHHHHHHHHH-cCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhcCccc
Q 046127 100 VNAPPHMGSAYTTIAADAIARFQRL-LGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKDLDIAY 175 (345)
Q Consensus 100 pnG~LHIGHar~~i~~DvlaR~lr~-~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~~lgI~~ 175 (345)
++|.+||||+-+... ++..|++. -|++|.+..|-+ |+ .--.+.|.++++ +.++...+.+++..+|.+.
T Consensus 390 s~g~lHLGh~v~~~k--~l~~~~~~~~g~~v~ilIaD~-~A----~i~d~~g~~~e~-i~~~~~y~~~~~~alG~d~ 458 (690)
T 3p0j_A 390 ALLKVPLDVAEGMIK--VTKDFIAAHPEGTVTLVLPDW-SA----VASDEITGVEKD-ISAALQVNCALLKAYGLPS 458 (690)
T ss_dssp CCSSCBHHHHHHHHH--HHHHHHHHCSSCEEEEEECTT-HH----HHTTCTTCCHHH-HHHHHHHHHHHHHHHTCCT
T ss_pred CCCCcccchHHHHHH--HHHHHHHHcCCCeEEEEEecc-hh----hhCCCCCCCHHH-HHHHHHHHHHHHHhcCCCc
Confidence 779999999875432 35566655 378888777643 21 111233455544 5556678888999999874
|
| >2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae} | Back alignment and structure |
|---|
Probab=90.63 E-value=0.75 Score=43.81 Aligned_cols=72 Identities=11% Similarity=0.128 Sum_probs=44.2
Q ss_pred CEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Q 046127 90 PFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWK 169 (345)
Q Consensus 90 ~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~ 169 (345)
..+.+..- |||.|||||..+++.. +.+++. |+++++..+ |.|+.-. ..+|+++ .++...+.+++.
T Consensus 5 ~~i~sG~~--PTG~lHLGn~vg~l~~--~~~lQ~--~~~~~~~Ia-D~ha~~~-------~~d~~~i-~~~~~~~~~~~l 69 (348)
T 2yy5_A 5 KRALTGIQ--ASGKQHLGNYLGVMQS--LIELQE--QCQLFVFVA-DLHSITV-------DFQPQAL-KQNNFDLVRTLL 69 (348)
T ss_dssp CEEEEEEC--CCTTCBHHHHHHTGGG--HHHHHH--HSEEEEEEC-HHHHTTS-------CCCHHHH-HHHHHHHHHHHH
T ss_pred eEEEEeeC--CCCcccHHHHHHHHHH--HHHHHh--CCcEEEEEc-ChhhccC-------CCCHHHH-HHHHHHHHHHHH
Confidence 34445454 5599999998876622 224444 788876544 2232111 1456543 445667778889
Q ss_pred hcCcccC
Q 046127 170 DLDIAYD 176 (345)
Q Consensus 170 ~lgI~~D 176 (345)
++|++++
T Consensus 70 A~Gldp~ 76 (348)
T 2yy5_A 70 AVGLDPQ 76 (348)
T ss_dssp HTTCCTT
T ss_pred HhCCChh
Confidence 9999997
|
| >3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1 | Back alignment and structure |
|---|
Probab=90.51 E-value=0.43 Score=45.49 Aligned_cols=73 Identities=14% Similarity=0.139 Sum_probs=44.8
Q ss_pred CCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 046127 89 DPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLW 168 (345)
Q Consensus 89 ~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l 168 (345)
++.+.+..- |+|.|||||..+++.. +.+++ .++++++..+ |.|..- ...+|++ ..++...+.+++
T Consensus 15 ~~~i~sG~~--PTG~lHLGh~vg~l~~--~~~lQ--~~~~~~~~ia-D~hA~t-------~~~~~~~-~~~~~~~~~~~~ 79 (346)
T 3n9i_A 15 KPIVFSGAQ--PSGELTIGNYMGALRQ--WVQMQ--DDYDCIYCIV-DLHAIT-------ARQDPAL-LRKRTLDTLALY 79 (346)
T ss_dssp CCEEEEEEC--SCSCCBHHHHHHTHHH--HHTTT--TTSEEEEEEC-HHHHTT-------SCCCHHH-HHHHHHHHHHHH
T ss_pred CCEEEECcC--CCCcccHHHHHHHHHH--HHHHH--hhCcEEEEEe-cceeec-------CCCCHHH-HHHHHHHHHHHH
Confidence 445555554 5699999998766522 22333 3688776543 444321 1345654 444556778888
Q ss_pred hhcCcccC
Q 046127 169 KDLDIAYD 176 (345)
Q Consensus 169 ~~lgI~~D 176 (345)
.+.|++.+
T Consensus 80 lA~GlDp~ 87 (346)
T 3n9i_A 80 LACGIDPK 87 (346)
T ss_dssp HHHTCCTT
T ss_pred HHcCCCcc
Confidence 89999987
|
| >2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A | Back alignment and structure |
|---|
Probab=88.61 E-value=0.31 Score=47.69 Aligned_cols=67 Identities=18% Similarity=0.171 Sum_probs=37.4
Q ss_pred CCCCc-CchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCC--cChHHHHHHHhCCCCHHHHHHHHHHHHHHHHhh
Q 046127 99 YVNAP-PHMGSAYTTIAADAIARFQRLLGKKVIFITGTDE--HGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKD 170 (345)
Q Consensus 99 ypnG~-LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~--~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~~ 170 (345)
-|||+ |||||.. ..-.+.+++ ..||++++..|-.+ .|.|--...++.-.+++++ .++...+++++..
T Consensus 38 dPTg~sLHlGh~v---~l~~l~~lQ-~~G~~~i~lIgd~ta~igdpsgk~~~R~~l~~e~i-~~n~~~~~~q~~~ 107 (419)
T 2ts1_A 38 DPTADSLHIGHLA---TILTMRRFQ-QAGHRPIALVGGATGLIGDPSGKKSERTLNAKETV-EAWSARIKEQLGR 107 (419)
T ss_dssp CCSSSSCBGGGHH---HHHHHHHHH-HTTCEEEEEECTTGGGTCCCTTCSSCCCCCCHHHH-HHHHHHHHHHHTT
T ss_pred CCCCCCccHHHHH---HHHHHHHHH-HCCCcEEEEEcCceeEecCCCCccccccCCCHHHH-HHHHHHHHHHHHH
Confidence 46699 9999965 334456665 46999988765322 2322111112222356654 4455666665554
|
| >1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A* | Back alignment and structure |
|---|
Probab=87.77 E-value=1 Score=44.15 Aligned_cols=76 Identities=20% Similarity=0.255 Sum_probs=34.6
Q ss_pred EEEEccCCCCCCc-CchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcC---hHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 046127 91 FVLTTPLYYVNAP-PHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHG---EKIAAAAADGGSSPSEHCDVVSQAYKT 166 (345)
Q Consensus 91 ~~I~~~~PypnG~-LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G---~~I~~~A~~~g~~p~~~~~~~~~~~~~ 166 (345)
+.|.++. -|||+ |||||.. ..-.+.+++. .||++++..|- .|+ .|.-...++.-.++++ +.++...+..
T Consensus 38 ~~vy~G~-dPTg~sLHlGh~v---~l~~l~~lQ~-~G~~~i~lIgD-~ta~igdpsgk~~~R~~l~~e~-i~~n~~~~~~ 110 (432)
T 1h3f_A 38 LTVKLGA-DPTRPDLHLGHAV---VLRKMRQFQE-LGHKVVLIIGD-FTGMIGDPSGRSKTRPPLTLEE-TRENAKTYVA 110 (432)
T ss_dssp CEEEEEE-CTTCCSCBHHHHH---HHHHHHHHHH-TTCEEEEEECC-CC----------------------HHHHHHHHH
T ss_pred cEEEEcc-cCCCCCCchhhHH---HHHHHHHHHH-CCCCEEEEEcc-ceEEecCCCCcccccccCCHHH-HHHHHHHHHH
Confidence 3333333 46686 9999966 3455666654 59998876653 333 3322222222233343 3344455666
Q ss_pred HHhhcCcc
Q 046127 167 LWKDLDIA 174 (345)
Q Consensus 167 ~l~~lgI~ 174 (345)
++. -+++
T Consensus 111 ql~-~~ld 117 (432)
T 1h3f_A 111 QAG-KILR 117 (432)
T ss_dssp HHT-TTSC
T ss_pred HHH-HHhc
Confidence 554 4455
|
| >1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A | Back alignment and structure |
|---|
Probab=87.17 E-value=0.37 Score=41.96 Aligned_cols=53 Identities=19% Similarity=0.327 Sum_probs=38.8
Q ss_pred ChhhHHHHHHHHHHHHhCCCeeecccCcccccCCCCccchhhhhcCCcCCCCCCC
Q 046127 183 EPKHEAIVKEFYSSVLANGDIYKADYEGLYCVNCEEYKDEKELLENQCCPIHLKP 237 (345)
Q Consensus 183 ~~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~~c~~~l~d~el~~~~~c~~~~~p 237 (345)
+..|......++.+|.......+.....|-|..||-.....++- ..||.||.|
T Consensus 128 E~ehe~~~~~~l~~l~~~~~~~~~~~~~~~C~~CG~~~~g~~~p--~~CP~C~~~ 180 (191)
T 1lko_A 128 EEFHEKRFLDFARNIKEGRVFLREQATKWRCRNCGYVHEGTGAP--ELCPACAHP 180 (191)
T ss_dssp HHHHHHHHHHHHHHHHHTCSSEEEEEEEEEETTTCCEEEEEECC--SBCTTTCCB
T ss_pred HHHHHHHHHHHHHhhhcccccccCCCceEEECCCCCEeeCCCCC--CCCCCCcCC
Confidence 45788888889888876544445556789999999766533332 389999987
|
| >2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A* | Back alignment and structure |
|---|
Probab=85.68 E-value=0.61 Score=43.94 Aligned_cols=32 Identities=28% Similarity=0.382 Sum_probs=22.4
Q ss_pred CCCCc-CchhHHHHHHHHHHHHHHHHHcCCeEEEEcC
Q 046127 99 YVNAP-PHMGSAYTTIAADAIARFQRLLGKKVIFITG 134 (345)
Q Consensus 99 ypnG~-LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G 134 (345)
-|||+ |||||.. ..-.+.+++ ..|+++++..|
T Consensus 41 ~PTg~slHlGh~l---~l~~~~~lQ-~~g~~~~~~i~ 73 (322)
T 2yxn_A 41 DPTADSLHLGHLV---PLLCLKRFQ-QAGHKPVALVG 73 (322)
T ss_dssp CCSSSSCBHHHHH---HHHHHHHHH-HTTCEEEEEEC
T ss_pred cCCCCcccHHHHH---HHHHHHHHH-HcCCcEEEEEc
Confidence 46699 9999965 334455655 45999887665
|
| >1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A | Back alignment and structure |
|---|
Probab=85.15 E-value=0.73 Score=44.66 Aligned_cols=32 Identities=22% Similarity=0.229 Sum_probs=22.7
Q ss_pred CCCCc-CchhHHHHHHHHHHHHHHHHHcCCeEEEEcC
Q 046127 99 YVNAP-PHMGSAYTTIAADAIARFQRLLGKKVIFITG 134 (345)
Q Consensus 99 ypnG~-LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G 134 (345)
-|||+ |||||..+ .-.+.++++ .||++++..|
T Consensus 72 dPTg~sLHlGhlv~---l~~l~~lQ~-~G~~~~~lIg 104 (392)
T 1y42_X 72 DPTAPSLHVGHLLP---LMPLFWMYL-EGYKAFTLIG 104 (392)
T ss_dssp CCCSSSCBGGGHHH---HHHHHHHHH-HTCEEEEEEC
T ss_pred cCCCCCccHHHHHH---HHHHHHHHH-cCCcEEEEEc
Confidence 46699 99999763 334566664 4999888655
|
| >2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A* | Back alignment and structure |
|---|
Probab=84.73 E-value=0.83 Score=43.67 Aligned_cols=38 Identities=24% Similarity=0.276 Sum_probs=24.4
Q ss_pred EEEEccCCCCCCc-CchhHHHHHHHHHHHHHHHHHcCCeEEEEcC
Q 046127 91 FVLTTPLYYVNAP-PHMGSAYTTIAADAIARFQRLLGKKVIFITG 134 (345)
Q Consensus 91 ~~I~~~~PypnG~-LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G 134 (345)
.+.+.. -|||+ |||||..+ .-.+.++++ .|+++++..|
T Consensus 48 ~vy~G~--~PTg~sLHLGhl~~---l~~~~~lQ~-~G~~~~~lIa 86 (356)
T 2pid_A 48 TIYCGF--DPTADSLHVGHLLA---LLGLFHLQR-AGHNVIALVG 86 (356)
T ss_dssp EEEEEE--CCSSSSCBHHHHHH---HHHHHHHHH-TTCEEEEEEC
T ss_pred EEEEee--cCCCCcccHHHHHH---HHHHHHHHH-CCCcEEEEEc
Confidence 344444 46697 99999442 234666654 5999888665
|
| >2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=83.52 E-value=0.82 Score=44.89 Aligned_cols=32 Identities=34% Similarity=0.532 Sum_probs=22.4
Q ss_pred CCCCc-CchhHHHHHHHHHHHHHHHHHcCCeEEEEcC
Q 046127 99 YVNAP-PHMGSAYTTIAADAIARFQRLLGKKVIFITG 134 (345)
Q Consensus 99 ypnG~-LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G 134 (345)
-|||+ |||||.. ..-.+.++++ .||++++..|
T Consensus 40 dPTg~sLHLGhlv---~l~~l~~lQ~-~G~~~i~lIg 72 (432)
T 2jan_A 40 DPTAPSLHAGHLV---PLLTLRRFQR-AGHRPIVLAG 72 (432)
T ss_dssp CCSSSSCBGGGHH---HHHHHHHHHH-TTCEEEEEEC
T ss_pred CCCCCCcCHHHHH---HHHHHHHHHH-CCCcEEEEEc
Confidence 46696 9999944 3334666664 6999988764
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 345 | ||||
| d1pfva2 | 350 | c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthe | 2e-53 | |
| d2d5ba2 | 348 | c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetR | 2e-40 | |
| d1h3na3 | 494 | c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetas | 2e-36 | |
| d1rqga2 | 361 | c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthe | 2e-35 | |
| d1ilea3 | 452 | c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthe | 4e-30 | |
| d1ivsa4 | 425 | c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase | 4e-29 | |
| d1ffya3 | 450 | c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthe | 2e-27 | |
| d1li5a2 | 315 | c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysR | 4e-16 | |
| d1irxa2 | 317 | c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase { | 1e-13 |
| >d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]} Length = 350 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Methionyl-tRNA synthetase (MetRS) species: Escherichia coli [TaxId: 562]
Score = 177 bits (449), Expect = 2e-53
Identities = 65/254 (25%), Positives = 109/254 (42%), Gaps = 10/254 (3%)
Query: 88 ADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAA 147
A ++T L Y N H+G I AD R+QR+ G +V FI D HG I A
Sbjct: 1 AKKILVTCALPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQ 60
Query: 148 DGGSSPSEHCDVVSQAYKTLWKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKAD 207
G +P + +SQ ++T + +I+YD + T ++ + + YS + NG I
Sbjct: 61 QLGITPEQMIGEMSQEHQTDFAGFNISYDNYHSTHSEENRQLSELIYSRLKENGFIKNRT 120
Query: 208 YEGLYCVNCEEYKDEKELLENQCCPIHLKPCVARKEDNYFFALSKYQKLLEDTLTENPDF 267
LY + + + V R +++FF L + ++L+
Sbjct: 121 ISQLYDPEKGMFLPD-------RFVVSGATPVMRDSEHFFFDLPSFSEMLQAWTRSGAL- 172
Query: 268 VQPSFRLNEVQGWIKSGLRDFSISRASVDWGIPVPNDNKQTIYVWFDALLGYISALSEDR 327
N++Q W +SGL+ + ISR + +G +PN + YVW DA +GY+ +
Sbjct: 173 --QEQVANKMQEWFESGLQQWDISRDAPYFGFEIPNAPGKYFYVWLDAPIGYMGSFKNLC 230
Query: 328 DQPSLRTAVSSGWP 341
D+ + W
Sbjct: 231 DKRGDSVSFDEYWK 244
|
| >d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]} Length = 348 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Methionyl-tRNA synthetase (MetRS) species: Thermus thermophilus [TaxId: 274]
Score = 143 bits (360), Expect = 2e-40
Identities = 117/236 (49%), Positives = 149/236 (63%), Gaps = 3/236 (1%)
Query: 90 PFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADG 149
F +TTP+YYVNA PH+G AYTT+ AD +AR+ RL G + F+TGTDEHGE + AA
Sbjct: 4 VFYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAA 63
Query: 150 GSSPSEHCDVVSQAYKTLWKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADYE 209
G P D VS +K W L IAYD FIRTTE +H+ +V+ V GDIY +YE
Sbjct: 64 GEDPKAFVDRVSGRFKRAWDLLGIAYDDFIRTTEERHKKVVQLVLKKVYEAGDIYYGEYE 123
Query: 210 GLYCVNCEEYKDEKELLENQCCPIHLKPCVARKEDNYFFALSKYQKLLEDTLTENPDFVQ 269
GLYCV+CE + EKE L CPIH +P RKE NYFF + KY+ L++ + ENPD ++
Sbjct: 124 GLYCVSCERFYTEKE-LVEGLCPIHGRPVERRKEGNYFFRMEKYRPWLQEYIQENPDLIR 182
Query: 270 PSFRLNEVQGWIKSGLRDFSIS--RASVDWGIPVPNDNKQTIYVWFDALLGYISAL 323
P NEV + + D SIS ++ V WGIP+P D +VWFDALL Y+SAL
Sbjct: 183 PEGYRNEVLAMLAEPIGDLSISRPKSRVPWGIPLPWDENHVTFVWFDALLNYVSAL 238
|
| >d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]} Length = 494 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Leucyl-tRNA synthetase (LeuRS) species: Thermus thermophilus [TaxId: 274]
Score = 135 bits (339), Expect = 2e-36
Identities = 43/209 (20%), Positives = 84/209 (40%), Gaps = 6/209 (2%)
Query: 86 EPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAA 145
+ Y + HMG D +ARF+R+ G +V+ G D G A
Sbjct: 30 GGRGKQYVLVMFPYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHPMGWDAFGLPAENA 89
Query: 146 AADGGSSPSEHCDVVSQAYKTLWKDLDIAYD--KFIRTTEPKHEAIVKEFYSSVLANGDI 203
A G P + + K + + I YD + + T EP++ + + + G
Sbjct: 90 ALKFGVHPKDWTYANIRQAKESLRLMGILYDWDREVTTCEPEYYRWNQWIFLKMWEKGLA 149
Query: 204 YKADYEGLYCVNCEEYKDEKELLENQCCPIHLKPCVARKEDNYFFALSKYQKLLEDTLTE 263
Y+A +C C+ ++++E +C P R+ + ++ ++ Y + L +
Sbjct: 150 YRAKGLVNWCPKCQTVLANEQVVEGRCWRHEDTPVEKRELEQWYLRITAYA----ERLLK 205
Query: 264 NPDFVQPSFRLNEVQGWIKSGLRDFSISR 292
+ + + ++ +Q LRD+ ISR
Sbjct: 206 DLEGLNWPEKVKAMQRAWIGRLRDWLISR 234
|
| >d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]} Length = 361 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Methionyl-tRNA synthetase (MetRS) species: Pyrococcus abyssi [TaxId: 29292]
Score = 130 bits (327), Expect = 2e-35
Identities = 74/245 (30%), Positives = 117/245 (47%), Gaps = 16/245 (6%)
Query: 91 FVLTTPLYYVNAPPHMG-SAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADG 149
+++T+ L Y N P H G A + AD R+ RL G+ V+FI GTDEHG I+ A
Sbjct: 4 YMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALKE 63
Query: 150 GSSPSEHCDVVSQAYKTLWKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADYE 209
G SP E D + K ++ I++D F RT P H + +EF+ NG + K +
Sbjct: 64 GRSPREIVDEFHEQIKITFQRAKISFDFFGRTELPIHYKLSQEFFLKAYENGHLVKKVTK 123
Query: 210 GLYCVNCEEYKDEKELLENQCCPIHLKPCVARKEDNYFFALSKYQKLLEDTLTENPDFVQ 269
YC + + + I +P R +Y+ + + + L+ + + P
Sbjct: 124 QAYCEHDKMFLP-------DRFAICGRPISFRDSAHYYIKMQDFAERLKRWIEKQPWKPN 176
Query: 270 PSFRLNEVQGWIKSGLRDFSISRASVDWGIPVP----NDNKQTIYVWFDALLGYISALSE 325
V WI+ GL + +I+R ++WGIPVP + + +YVWF+A +GYIS E
Sbjct: 177 VKNM---VLSWIEEGLEERAITR-DLNWGIPVPLDEEDMKGKVLYVWFEAPIGYISITIE 232
Query: 326 DRDQP 330
+
Sbjct: 233 HFKRI 237
|
| >d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]} Length = 452 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Isoleucyl-tRNA synthetase (IleRS) species: Thermus thermophilus [TaxId: 274]
Score = 117 bits (293), Expect = 4e-30
Identities = 41/252 (16%), Positives = 73/252 (28%), Gaps = 25/252 (9%)
Query: 76 YATNTDKSGTEPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGT 135
+ + + P + + N PH+G A D R++ + G G
Sbjct: 27 FQKSVENRKGGP--RYTVYEGPPTANGLPHVGHAQARSYKDLFPRYKTMRGYYAPRRAGW 84
Query: 136 DEHGEKIAAAAADGGSSPS-------------EHCDVVSQAYKTLWKDLDIAY------D 176
D HG + S + C Y+ W+ +
Sbjct: 85 DTHGLPVELEVEKKLGLKSKREIEAYGIERFNQACRESVFTYEKEWEAFTERIAYWVDLE 144
Query: 177 KFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLYCVNCEEYKDEKELLENQ-CCPIHL 235
T EP + + ++ G +Y+ YC C E+ C
Sbjct: 145 DAYATLEPTYIESIWWSLKNLFDRGLLYRDHKVVPYCPRCGTPLSSHEVALGYPHCWRCS 204
Query: 236 KPCVARKEDNYFFALSKYQKLLEDTLTENPDFVQPSFRLNEVQGWIKSGLRDFSISRASV 295
P + +++F + ++ E P G L D+++SR
Sbjct: 205 TPLMYYATESWFIKNTLFKD--ELIRNNQEIHWVPPHIKEGRYGEWLKNLVDWALSRNR- 261
Query: 296 DWGIPVPNDNKQ 307
WG P+P Q
Sbjct: 262 YWGTPLPIWVCQ 273
|
| >d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]} Length = 425 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Valyl-tRNA synthetase (ValRS) species: Thermus thermophilus [TaxId: 274]
Score = 113 bits (284), Expect = 4e-29
Identities = 44/246 (17%), Positives = 79/246 (32%), Gaps = 23/246 (9%)
Query: 86 EPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAA 145
PFV+ P V HMG A DA+ R++R+ G + +++ GTD G
Sbjct: 31 SGKPPFVIFMPPPNVTGSLHMGHALDNSLQDALIRYKRMRGFEAVWLPGTDHAGIATQVV 90
Query: 146 AADGGSSPSEHCDVVSQAY----------------KTLWKDLDIAYD--KFIRTTEPKHE 187
+ + + K L + D + T + K
Sbjct: 91 VERLLLKEGKTRHDLGREKFLERVWQWKEESGGTILKQLKRLGASADWSREAFTMDEKRS 150
Query: 188 AIVKEFYSSVLANGDIYKADYEGLYCVNCEEYKDEKELLENQCCPIHLKPCVARKEDNYF 247
V+ +S G Y+A +C CE + E + C P ++
Sbjct: 151 RAVRYAFSRYYHEGLAYRAPRLVNWCPRCETTLSDL---EVETCSRCGTPIEYAIFPQWW 207
Query: 248 FALSKYQKLLEDTLTENPDFVQPSFRLNEVQGWIKSGLRDFSISRASVDWGIPVPNDNKQ 307
+ + + L P W+++ ++D++ISR WG +P +
Sbjct: 208 LRMRPLAEEVLKGLRRGDIAFVPERWKKVNMDWLEN-VKDWNISRQL-WWGHQIPAWYCE 265
Query: 308 TIYVWF 313
Sbjct: 266 DCQAVN 271
|
| >d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]} Length = 450 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Isoleucyl-tRNA synthetase (IleRS) species: Staphylococcus aureus [TaxId: 1280]
Score = 109 bits (273), Expect = 2e-27
Identities = 50/258 (19%), Positives = 87/258 (33%), Gaps = 21/258 (8%)
Query: 85 TEPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAA 144
+ + F+L Y N HMG A I D I R++ + G ++ G D HG I
Sbjct: 44 NKGNETFILHDGPPYANGNLHMGHALNKILKDFIVRYKTMQGFYAPYVPGWDTHGLPIEQ 103
Query: 145 AAADGGSSPSEHCDVVSQAYKTLWKDLDIAYDK--------------FIRTTEPKHEAIV 190
A G + + + I K T +P++EA
Sbjct: 104 ALTKKGVDRKKMSTAEFREKCKEFALEQIELQKKDFRRLGVRGDFNDPYITLKPEYEAAQ 163
Query: 191 KEFYSSVLANGDIYKADYEGLYCVNCEEYKDEKELLENQCCPIHLKPCVARKEDNYFFAL 250
+ + G IYK + + E + +E KP + R +F ++
Sbjct: 164 IRIFGEMADKGLIYKGKKPVYWSPSSESSLA-EAEIEYPHDWRTKKPVIFRATPQWFASI 222
Query: 251 SKYQKLLEDTLTENPDFVQPSFRLNEVQGWIKSGLRDFSISRASVDWGIPVPNDNKQT-- 308
SK ++ + D + V ++ ISR V WG+P+P +
Sbjct: 223 SKVRQDILDAIENTNFKVNWGKTRIYNMVR---DRGEWVISRQRV-WGVPLPVFYAENGE 278
Query: 309 IYVWFDALLGYISALSED 326
I + + + +E
Sbjct: 279 IIMTKETVNHVADLFAEH 296
|
| >d1li5a2 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysRS) {Escherichia coli [TaxId: 562]} Length = 315 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Cysteinyl-tRNA synthetase (CysRS) species: Escherichia coli [TaxId: 562]
Score = 75.8 bits (185), Expect = 4e-16
Identities = 38/232 (16%), Positives = 63/232 (27%), Gaps = 35/232 (15%)
Query: 100 VNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDV 159
V H+G T +A D +AR+ R LG K+ ++ + +KI A + G S D
Sbjct: 32 VYDLCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANENGESFVAMVDR 91
Query: 160 VSQAYKTLWKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLYC--VNCE 217
+ + L+I I++ ++A G Y AD +
Sbjct: 92 MIAEMHKDFDALNILRPDMEPRATHHIAEIIE-LTEQLIAKGHAYVADNGDVMFDVPTDP 150
Query: 218 EYKDEKELLENQCCPIHLKPCVARKEDNYFFALSKYQKLLEDTLTENPDFVQPSFRLNEV 277
Y +Q V K + F L K
Sbjct: 151 TYGVLSRQDLDQLQAGARVDVVDDKRNPMDFVLWK------------------------- 185
Query: 278 QGWIKSGLRDFSISRASVDWGIPVPNDNKQTIYVWFDALLGYISALSEDRDQ 329
+ WG P + + + L + D
Sbjct: 186 -------MSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDL 230
|
| >d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 317 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Class I lysyl-tRNA synthetase species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 68.6 bits (166), Expect = 1e-13
Identities = 13/168 (7%), Positives = 32/168 (19%), Gaps = 8/168 (4%)
Query: 87 PADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAA 146
+ + H+G+ A + R G +V I D++
Sbjct: 15 GEKEKYVVESGITPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYDRFRKVPR 74
Query: 147 ADGGSSPSEHCDVVSQAYKTLWKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKA 206
+S+ A + E + ++ +
Sbjct: 75 NVPQEWKDYLGMPISEVPDPWGCHESYAEHFMRKFEEEVEKLGIEVDLLYASELYKRGEY 134
Query: 207 DYEGLYCV--------NCEEYKDEKELLENQCCPIHLKPCVARKEDNY 246
E +Y++ +
Sbjct: 135 SEEIRLAFEKRDKIMEILNKYREIAKQPPLPENWWPAMVYCPEHRREA 182
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 345 | |||
| d1ivsa4 | 425 | Valyl-tRNA synthetase (ValRS) {Thermus thermophilu | 100.0 | |
| d1pfva2 | 350 | Methionyl-tRNA synthetase (MetRS) {Escherichia col | 100.0 | |
| d1ffya3 | 450 | Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus | 100.0 | |
| d1ilea3 | 452 | Isoleucyl-tRNA synthetase (IleRS) {Thermus thermop | 100.0 | |
| d1h3na3 | 494 | Leucyl-tRNA synthetase (LeuRS) {Thermus thermophil | 100.0 | |
| d1rqga2 | 361 | Methionyl-tRNA synthetase (MetRS) {Pyrococcus abys | 100.0 | |
| d2d5ba2 | 348 | Methionyl-tRNA synthetase (MetRS) {Thermus thermop | 100.0 | |
| d1li5a2 | 315 | Cysteinyl-tRNA synthetase (CysRS) {Escherichia col | 99.92 | |
| d1f7ua2 | 348 | Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Sa | 99.69 | |
| d1iq0a2 | 370 | Arginyl-tRNA synthetase (ArgRS) {Thermus thermophi | 99.63 | |
| d1irxa2 | 317 | Class I lysyl-tRNA synthetase {Archaeon Pyrococcus | 99.48 | |
| d1j09a2 | 305 | Glutamyl-tRNA synthetase (GluRS) {Thermus thermoph | 99.01 | |
| d1nzja_ | 286 | Glutamyl-Q tRNA-Asp synthetase YadB {Escherichia c | 98.84 | |
| d1gtra2 | 331 | Glutaminyl-tRNA synthetase (GlnRS) {Escherichia co | 98.8 | |
| d1j1ua_ | 306 | Tyrosyl-tRNA synthetase (TyrRS) {Archaeon Methanoc | 95.79 | |
| d1n3la_ | 339 | Tyrosyl-tRNA synthetase (TyrRS) {Human (Homo sapie | 94.91 | |
| d1r6ta2 | 386 | Tryptophanyl-tRNA synthetase (TrpRS) {Human (Homo | 94.54 | |
| d1h3fa1 | 343 | Tyrosyl-tRNA synthetase (TyrRS) {Thermus thermophi | 92.28 | |
| d1i6la_ | 326 | Tryptophanyl-tRNA synthetase (TrpRS) {Bacillus ste | 91.18 | |
| d1iq0a3 | 96 | Arginyl-tRNA synthetase (ArgRS), N-terminal 'addit | 90.42 | |
| d1jila_ | 323 | Tyrosyl-tRNA synthetase (TyrRS) {Staphylococcus au | 90.12 | |
| d2ts1a_ | 319 | Tyrosyl-tRNA synthetase (TyrRS) {Bacillus stearoth | 89.96 |
| >d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Valyl-tRNA synthetase (ValRS) species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=2.7e-47 Score=373.97 Aligned_cols=260 Identities=20% Similarity=0.295 Sum_probs=228.6
Q ss_pred ccCCCCCCCCCCCCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhC----CC
Q 046127 76 YATNTDKSGTEPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADG----GS 151 (345)
Q Consensus 76 ~~~~~~~~~~~~~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~----g~ 151 (345)
.....+....+++++|+|++|||||||+|||||+++++++|+++||+|++||+|.+++|+|+||++|+..|++. +.
T Consensus 21 ~~~~~~~~~~~~~~~f~i~~~pPy~NG~lHlGH~~~yv~~Dv~~Ry~r~~G~~V~~v~g~D~hG~~i~~~aek~~~~~~~ 100 (425)
T d1ivsa4 21 AKNPFVANPKSGKPPFVIFMPPPNVTGSLHMGHALDNSLQDALIRYKRMRGFEAVWLPGTDHAGIATQVVVERLLLKEGK 100 (425)
T ss_dssp HSSCCCCCTTCCSCEEEEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTSEEEEECEEBCCTHHHHHHHHHHHHTTTC
T ss_pred HHCCcccCCCCCCCcEEEEcCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCceeecCcccCCcchHHHHHHHhhcccCC
Confidence 33344445567789999999999999999999999999999999999999999999999999999999998873 43
Q ss_pred CH------------HHHHHHHHHHHHHHHhhcCcccC--ccccCCChhhHHHHHHHHHHHHhCCCeeecccCcccccCCC
Q 046127 152 SP------------SEHCDVVSQAYKTLWKDLDIAYD--KFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLYCVNCE 217 (345)
Q Consensus 152 ~p------------~~~~~~~~~~~~~~l~~lgI~~D--~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~~c~ 217 (345)
.+ ..++..+.+.|+++|++||+..| .+++|+++.|.+.++++|.+|.++|++|++++.++||+.|+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~d~~~~~~t~~~~~~~~~~~~~~~l~~~G~iy~~~~~~~~c~~~~ 180 (425)
T d1ivsa4 101 TRHDLGREKFLERVWQWKEESGGTILKQLKRLGASADWSREAFTMDEKRSRAVRYAFSRYYHEGLAYRAPRLVNWCPRCE 180 (425)
T ss_dssp CGGGSTTTHHHHHHHHHHHHHHHHHHHHHHHTTCCCCGGGCEETTSHHHHHHHHHHHHHHHTTSSEEEECCEEEEETTTT
T ss_pred ChHHhcHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCcchhhcccchhhhhhhHHHHhhhhccCcccccceeeccccccc
Confidence 33 24567788999999999999987 56789999999999999999999999999999999999999
Q ss_pred CccchhhhhcCCcCCCCCCCceEeeccccccchhHhHHHHHHHHhcCCCcccChHHHHHHHHHHhcCCCCcccccCCCCC
Q 046127 218 EYKDEKELLENQCCPIHLKPCVARKEDNYFFALSKYQKLLEDTLTENPDFVQPSFRLNEVQGWIKSGLRDFSISRASVDW 297 (345)
Q Consensus 218 ~~l~d~el~~~~~c~~~~~pve~r~~~~~f~~l~~~~~~L~e~l~~~~~~~~P~~~~~~~~~wl~~gL~D~~ISR~~~~W 297 (345)
+++++.++. .|.+|+.+++.+.++|||++++++.+.+..+.+..+..+.|+..+..+..|+. +++||+|||+ ..|
T Consensus 181 ~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~-~l~d~~isr~-~~~ 255 (425)
T d1ivsa4 181 TTLSDLEVE---TCSRCGTPIEYAIFPQWWLRMRPLAEEVLKGLRRGDIAFVPERWKKVNMDWLE-NVKDWNISRQ-LWW 255 (425)
T ss_dssp EECCGGGEE---EETTTCSBCEEEECCEEEECHHHHHHHHHHHHHHTCCEESSSTHHHHHHHHHH-TCCCEECEEC-CSS
T ss_pred ccccccccc---cccccCcccccccccchhhccchhhccchhhhhcCCcceeccccceeeehhhh-hcCcceeecc-ccc
Confidence 999998875 47889999999999999999999999999999987767789988888888886 6999999998 699
Q ss_pred CcccCCC---------------------------------CCCcEEEecCchhHHHHhcCCCCCCCchhhhhhCcCCCCC
Q 046127 298 GIPVPND---------------------------------NKQTIYVWFDALLGYISALSEDRDQPSLRTAVSSGWPASL 344 (345)
Q Consensus 298 GIpvP~~---------------------------------~~~~iyVWfdal~gYls~~~~~~~~~~~~~~~~~~w~~~~ 344 (345)
|+++|.. ..++++|||||+++|++.++++.+. +.+..+||.++
T Consensus 256 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~da~~~~~~~~~~~~~~----~~~~~~~p~di 331 (425)
T d1ivsa4 256 GHQIPAWYCEDCQAVNVPRPERYLEDPTSCEACGSPRLKRDEDVFDTWFSSALWPLSTLGWPEET----EDLKAFYPGDV 331 (425)
T ss_dssp SCCCCCEEETTTCCEECCCGGGTTCCCCSCTTTCCSCEEECCCEECHHHHHTSCTTTTTTTTTTC----SHHHHSCSBSC
T ss_pred CCccceeeccCcceeecCccccccccccccccccCccccccCccccccccchhHHHHhhCCCcCh----HHHhCCCCceE
Confidence 9999831 3579999999999999999887664 67778888764
|
| >d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Methionyl-tRNA synthetase (MetRS) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4e-47 Score=363.68 Aligned_cols=230 Identities=27% Similarity=0.484 Sum_probs=215.8
Q ss_pred CCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 046127 89 DPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLW 168 (345)
Q Consensus 89 ~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l 168 (345)
++|+|++|+|||||+|||||+|+++++|+++||+|++|++|.+++|+||||++|+.+|++.|++++++++++...+.+++
T Consensus 2 ~~~~i~~~~P~~nG~lHiGHar~~v~~D~l~R~lr~~G~~V~~v~~~dd~g~ki~~~a~~~g~~~~~~~~~~~~~~~~~~ 81 (350)
T d1pfva2 2 KKILVTCALPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQLGITPEQMIGEMSQEHQTDF 81 (350)
T ss_dssp CEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred CeEEEeCCCCCCCCCccccccHHHHHHHHHHHHHHhcCCceEecCccCCccHHHHHHHHHcCCCHHHHHHhHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCcccCccccCCChhhHHHHHHHHHHHHhCCCeeecccCcccccCCCCccchhhhhcCCcCCCCCCCceEeecccccc
Q 046127 169 KDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLYCVNCEEYKDEKELLENQCCPIHLKPCVARKEDNYFF 248 (345)
Q Consensus 169 ~~lgI~~D~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~~c~~~l~d~el~~~~~c~~~~~pve~r~~~~~f~ 248 (345)
+.|||+++.++.|.++.|.+.+++++.+|.++|++|+++..++||+.|+++++|.++ .||.+++.++++||||
T Consensus 82 ~~l~i~~~~~~~t~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~d~~~~~~l~d~~~-------~~g~~~~~~~~~~~f~ 154 (350)
T d1pfva2 82 AGFNISYDNYHSTHSEENRQLSELIYSRLKENGFIKNRTISQLYDPEKGMFLPDRFV-------VSGATPVMRDSEHFFF 154 (350)
T ss_dssp HHTTCCCSEEEESSSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCGGGT-------TTCCCCEEEEEEEEEE
T ss_pred HHcCCCcccCCCcCCcccchHHHHHHHHHhhccceeeccceEEEeCCCCeEcCCcee-------ccCCCccceecchhee
Confidence 999999999999999999999999999999999999999999999999999997654 4778899999999999
Q ss_pred chhHhHHHHHHHHhcCCCcccChHHHHHHHHHHhcCCCCcccccCCCCCCcccCCCCCCcEEEecCchhHHHHhcCCCCC
Q 046127 249 ALSKYQKLLEDTLTENPDFVQPSFRLNEVQGWIKSGLRDFSISRASVDWGIPVPNDNKQTIYVWFDALLGYISALSEDRD 328 (345)
Q Consensus 249 ~l~~~~~~L~e~l~~~~~~~~P~~~~~~~~~wl~~gL~D~~ISR~~~~WGIpvP~~~~~~iyVWfdal~gYls~~~~~~~ 328 (345)
+|++|++.|.++++... +|+..++.+..++.+++.||++||+..+||+++|.++++++++|++++.+|+++...+.+
T Consensus 155 ~l~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (350)
T d1pfva2 155 DLPSFSEMLQAWTRSGA---LQEQVANKMQEWFESGLQQWDISRDAPYFGFEIPNAPGKYFYVWLDAPIGYMGSFKNLCD 231 (350)
T ss_dssp CGGGGHHHHHHHHTTSC---SCHHHHHHHHHHHHHCCCCEECEEESSCSSCBCTTCTTEEECHHHHHHHHHHHHHHHHHH
T ss_pred ehHHHHHHHHHHhhcCC---CchhhHHHHHHHhhccCCccccccccccCCccccCCCCcccccccccccchhhhhhcccc
Confidence 99999999999998763 566678888888888999999999966789999999999999999999999998775543
|
| >d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Isoleucyl-tRNA synthetase (IleRS) species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=3.7e-47 Score=378.01 Aligned_cols=213 Identities=23% Similarity=0.330 Sum_probs=198.1
Q ss_pred CCCCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCH------------
Q 046127 86 EPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSP------------ 153 (345)
Q Consensus 86 ~~~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p------------ 153 (345)
.++++|+|++|||||||.|||||+++++++|+++||+||+|++|++++|+|+||+||+..|++.+..+
T Consensus 45 ~~~~~f~~~~~pPy~nG~lHiGH~~~~~~~Dv~~Ry~rm~G~~V~~~~G~D~~G~pie~~~~~~~~~~~~~~~~~~~~~~ 124 (450)
T d1ffya3 45 KGNETFILHDGPPYANGNLHMGHALNKILKDFIVRYKTMQGFYAPYVPGWDTHGLPIEQALTKKGVDRKKMSTAEFREKC 124 (450)
T ss_dssp TTSCBCCEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTCBCCCCCEEBCCSHHHHHHHHHHTCCSTTTCHHHHHHHH
T ss_pred CCCCcEEEecCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCccccccccccCCcHHHHHHHhhCCccccccHHHHhhhc
Confidence 34688999999999999999999999999999999999999999999999999999999999877654
Q ss_pred HHHHHHHHHHHHHHHhhcCcccC--ccccCCChhhHHHHHHHHHHHHhCCCeeecccCcccccCCCCccchhhhhcCCcC
Q 046127 154 SEHCDVVSQAYKTLWKDLDIAYD--KFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLYCVNCEEYKDEKELLENQCC 231 (345)
Q Consensus 154 ~~~~~~~~~~~~~~l~~lgI~~D--~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~~c~~~l~d~el~~~~~c 231 (345)
+++++++.+.+++++++||+++| ..+.|+++.|.+.++++|.+|+++|+||++..+++|||.|++++++.++.. ++|
T Consensus 125 ~~~~~~~~~~~~~~~~~lg~~~D~~~~~~T~~~~~~~~v~~~f~~l~~~G~iy~~~~~v~~~p~~~~~~~~~e~~~-~~~ 203 (450)
T d1ffya3 125 KEFALEQIELQKKDFRRLGVRGDFNDPYITLKPEYEAAQIRIFGEMADKGLIYKGKKPVYWSPSSESSLAEAEIEY-PHD 203 (450)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCSCTTSCEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCGGGEEE-EEE
T ss_pred chhhhhhhhhHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHcCCeeccccccccccccCcccccccccc-ccc
Confidence 35578889999999999999988 667899999999999999999999999999999999999999999999985 889
Q ss_pred CCCCCCceEeeccccccchhHhHHHHHHHHhcCCCcccChHHHHHHHHHHhcCCCCcccccCCCCCCcccCC
Q 046127 232 PIHLKPCVARKEDNYFFALSKYQKLLEDTLTENPDFVQPSFRLNEVQGWIKSGLRDFSISRASVDWGIPVPN 303 (345)
Q Consensus 232 ~~~~~pve~r~~~~~f~~l~~~~~~L~e~l~~~~~~~~P~~~~~~~~~wl~~gL~D~~ISR~~~~WGIpvP~ 303 (345)
++|+.|++.+.++|||+++..+++.+.+.++.. .+.|+..+..+..|++ +++||||||+ ..||+|+|.
T Consensus 204 ~r~~~~~~~~~~~qwf~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~Dw~iSRq-r~WG~piP~ 271 (450)
T d1ffya3 204 WRTKKPVIFRATPQWFASISKVRQDILDAIENT--NFKVNWGKTRIYNMVR-DRGEWVISRQ-RVWGVPLPV 271 (450)
T ss_dssp TTTCCBCEEEEEEEEEECHHHHHHHHHHHHHTS--EESSHHHHHHHHHHHH-HCCCEECEES-CSSSCBCCC
T ss_pred ccccCCceeeccccceeccccccccchhhcccc--cccccccceeeecccc-Cccchheeee-cccccCcce
Confidence 999999999999999999999999999999987 4689888888899997 4999999998 699999993
|
| >d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Isoleucyl-tRNA synthetase (IleRS) species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=9.1e-46 Score=365.45 Aligned_cols=251 Identities=18% Similarity=0.244 Sum_probs=215.7
Q ss_pred CCCCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCC-------------
Q 046127 86 EPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSS------------- 152 (345)
Q Consensus 86 ~~~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~------------- 152 (345)
.++++|+|++|||||||+|||||+++++++||++||+|++|++|++++|+|+||++|+.+|++.+..
T Consensus 35 ~~~~~f~i~~~pPy~nG~lHiGH~~~~v~~Dv~~Ry~r~~G~~V~~v~G~D~hG~~i~~~a~~~~~~~~~~~~~~~~~~~ 114 (452)
T d1ilea3 35 KGGPRYTVYEGPPTANGLPHVGHAQARSYKDLFPRYKTMRGYYAPRRAGWDTHGLPVELEVEKKLGLKSKREIEAYGIER 114 (452)
T ss_dssp TTSCBCCBCCCCCCTTSCCCTTHHHHHHHHHHHHHHHHHTTCBCCCEEEECCCHHHHHHHHHHHTTCCSHHHHHHHCHHH
T ss_pred CCCCCEEEecCCCCCCCcchhhhHHHHHHHHHHHHHHHcCCCceeccCCcCCCCHHHHHHHHHhhccccccchhHHHHHH
Confidence 3468899999999999999999999999999999999999999999999999999999999886643
Q ss_pred ----HHHHHHHHHHHHHHHHhhcCcccC--ccccCCChhhHHHHHHHHHHHHhCCCeeecccCcccccCCCCccchhhhh
Q 046127 153 ----PSEHCDVVSQAYKTLWKDLDIAYD--KFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLYCVNCEEYKDEKELL 226 (345)
Q Consensus 153 ----p~~~~~~~~~~~~~~l~~lgI~~D--~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~~c~~~l~d~el~ 226 (345)
+++++..+.+.+.+++.++|++.| .+++|+++.|.+.++++|.+|.++|++|++...++||+.|++++++.++.
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~l~~~~d~~~~~~T~~~~~~~~~~~~f~~l~~~G~iy~~~~~~~~~~~~~~~~~~~~~~ 194 (452)
T d1ilea3 115 FNQACRESVFTYEKEWEAFTERIAYWVDLEDAYATLEPTYIESIWWSLKNLFDRGLLYRDHKVVPYCPRCGTPLSSHEVA 194 (452)
T ss_dssp HHHHHHHHTTTTHHHHTTHHHHTTCCCEEEEEEETTSHHHHHHHHHHHHHHHHTTCEEEECCEEEEETTTTEECCHHHHH
T ss_pred HHHHHhhHHhhhhhhHHHHHhhhccccccchhhhcCChHHHHHHHHHHHHHHhcCCcccccccchhhccccccccccccc
Confidence 245666677888889999999987 67899999999999999999999999999999999999999999998876
Q ss_pred c-CCcCCCCCCCceEeeccccccchhHhHHHHHHHHhcCCCcccChHHHH-HHHHHHhcCCCCcccccCCCCCCcccCCC
Q 046127 227 E-NQCCPIHLKPCVARKEDNYFFALSKYQKLLEDTLTENPDFVQPSFRLN-EVQGWIKSGLRDFSISRASVDWGIPVPND 304 (345)
Q Consensus 227 ~-~~~c~~~~~pve~r~~~~~f~~l~~~~~~L~e~l~~~~~~~~P~~~~~-~~~~wl~~gL~D~~ISR~~~~WGIpvP~~ 304 (345)
. .+.|++|+.|++.+.+.+||++++.+++.+.+++.... ..|....+ .+..|+ ++|+||+|||+ ..||+|+|..
T Consensus 195 ~~~p~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~~~~~~~~~~~~-~~l~dw~IsR~-~~wg~~ip~~ 270 (452)
T d1ilea3 195 LGYPHCWRCSTPLMYYATESWFIKNTLFKDELIRNNQEIH--WVPPHIKEGRYGEWL-KNLVDWALSRN-RYWGTPLPIW 270 (452)
T ss_dssp HTEEBCSSSCCBCEEEECCEEEECGGGGHHHHHHHHHHSE--ESSGGGTTTTTHHHH-HTCCCEECCBC-CSSSCBCCEE
T ss_pred ccCCCccCcCCceEEeeccchhhhhccchhhhhhhhcccc--cCcchhhhceeeeec-cCCccceeecc-cccccCCccc
Confidence 4 36799999999999999999999999999999998763 35554443 344555 57999999997 6999999931
Q ss_pred ---------------------------------------------------CCCcEEEecCchhHHHHhcCCCCCCCchh
Q 046127 305 ---------------------------------------------------NKQTIYVWFDALLGYISALSEDRDQPSLR 333 (345)
Q Consensus 305 ---------------------------------------------------~~~~iyVWfdal~gYls~~~~~~~~~~~~ 333 (345)
..+++++|+++...+++..+...+. .
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~w~~s~~~~~~~~~~~~~~---~ 347 (452)
T d1ilea3 271 VCQACGKEEAIGSFQELKARATKPLPEPFDPHRPYVDQVELACACGGTMRRVPYVIDVWYDSGAMPFASLHYPFEH---E 347 (452)
T ss_dssp EESSSSCCEECCSHHHHHHHBSSCCCSSCCCSHHHHTTCEEECTTSSEEEECSCBCCHHHHHHHHHHHTTTTTTSC---H
T ss_pred cccccCcccccchhhhhhhhhccccCccccccccccccccccccccccccccccccccccccccchhhhccCccch---h
Confidence 1478889999999999988776553 2
Q ss_pred hhhhCcCCCC
Q 046127 334 TAVSSGWPAS 343 (345)
Q Consensus 334 ~~~~~~w~~~ 343 (345)
..+..+||++
T Consensus 348 ~~~~~~~p~~ 357 (452)
T d1ilea3 348 EVFRESFPAD 357 (452)
T ss_dssp HHHHHHSSBS
T ss_pred hhcccCCcch
Confidence 3455567765
|
| >d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Leucyl-tRNA synthetase (LeuRS) species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=3.4e-43 Score=350.32 Aligned_cols=213 Identities=23% Similarity=0.365 Sum_probs=201.4
Q ss_pred CCCCCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHH
Q 046127 85 TEPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAY 164 (345)
Q Consensus 85 ~~~~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~ 164 (345)
..++++|+|++||||+||.||||||++++++|+++||+||+|++|.+++|+|+||+||+.+|++.+..++++++++...+
T Consensus 29 ~~~~~~~~i~~~pP~~nG~lHiGH~~~~~~~D~~~R~~rm~G~~v~~~~G~D~~G~~~e~~~~k~~~~~~~~~~~~~~~~ 108 (494)
T d1h3na3 29 PGGRGKQYVLVMFPYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHPMGWDAFGLPAENAALKFGVHPKDWTYANIRQA 108 (494)
T ss_dssp CCTTCEEEEEECCCCSSSCCBHHHHHHHHHHHHHHHHHHHTTCEEECCCCBCCSSHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred ccCCCCeEEEeCCCCCCCchhhhHHHHHHHHHHHHHHHHccCCcccCcCCcCcchHHHHHHHHHhCCChHHHHHHHHHHh
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCcccC--ccccCCChhhHHHHHHHHHHHHhCCCeeecccCcccccCCCCccchhhhhcCCcCCCCCCCceEee
Q 046127 165 KTLWKDLDIAYD--KFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLYCVNCEEYKDEKELLENQCCPIHLKPCVARK 242 (345)
Q Consensus 165 ~~~l~~lgI~~D--~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~~c~~~l~d~el~~~~~c~~~~~pve~r~ 242 (345)
++++++||+++| ++++|+++.|.+.++++|.+|+++|+||++.++++||+.|+++|++.|++++.+|..++.+++.++
T Consensus 109 ~~~~~~~g~~~d~~~~~~T~d~~~~~~~~~~f~~l~~~g~iy~~~~~~~~~~~~~t~l~~~ev~~~~~~~~~~~~v~~~~ 188 (494)
T d1h3na3 109 KESLRLMGILYDWDREVTTCEPEYYRWNQWIFLKMWEKGLAYRAKGLVNWCPKCQTVLANEQVVEGRCWRHEDTPVEKRE 188 (494)
T ss_dssp HHHHHHTTCCCCGGGCCBTTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEETTEESSCTTSBCEEEE
T ss_pred HHHHHhcCcccCCCCceecCCccccchHHHHHHHhhhCCcEEeeeEEEEeecCccceecchhcccCccccccCceEEeec
Confidence 999999999887 688999999999999999999999999999999999999999999999998777888899999999
Q ss_pred ccccccchhHhHHHHHHHHhcCCCcccChHHHHHHHHHHhcCCCCcccccCCCCCCcccC
Q 046127 243 EDNYFFALSKYQKLLEDTLTENPDFVQPSFRLNEVQGWIKSGLRDFSISRASVDWGIPVP 302 (345)
Q Consensus 243 ~~~~f~~l~~~~~~L~e~l~~~~~~~~P~~~~~~~~~wl~~gL~D~~ISR~~~~WGIpvP 302 (345)
+++|||+++.+++.+..++... .+|..++++...|+. ++.||+|||+ ..||+++|
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~i~-~l~d~~Isr~-~~~~~~i~ 243 (494)
T d1h3na3 189 LEQWYLRITAYAERLLKDLEGL---NWPEKVKAMQRAWIG-RLRDWLISRQ-RYWGTPIP 243 (494)
T ss_dssp EEEEEECGGGGHHHHHHTTTTC---BSCHHHHHHHHHHHC-SCCCEECEES-CSSSEECC
T ss_pred cCchhhhhhccccccccccccc---ccccccccccccccc-cccccccccc-cccccceE
Confidence 9999999999999999998764 467788888899995 6999999998 79999998
|
| >d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Methionyl-tRNA synthetase (MetRS) species: Pyrococcus abyssi [TaxId: 29292]
Probab=100.00 E-value=4.4e-43 Score=335.15 Aligned_cols=227 Identities=33% Similarity=0.613 Sum_probs=210.2
Q ss_pred CCEEEEccCCCCCCcCchhHHH-HHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 046127 89 DPFVLTTPLYYVNAPPHMGSAY-TTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTL 167 (345)
Q Consensus 89 ~~~~I~~~~PypnG~LHIGHar-~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~ 167 (345)
.+|+|++|+|||||+|||||++ +++.+|+++||+|++||+|.+++|+|+||++|+.+|++.|++|+++++.+...+.++
T Consensus 2 ~~~~v~~~~P~p~G~lHiGH~~~~~i~~Dil~R~~r~~G~~V~~v~g~D~~g~~i~~~A~~~g~~~~~~~~~~~~~~~~~ 81 (361)
T d1rqga2 2 VRYMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALKEGRSPREIVDEFHEQIKIT 81 (361)
T ss_dssp CEEEEEECCCBTTSCCBHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred ceEEEecCCCCCCCCcccccccccHHHHHHHHHHHHhcCCceEecCccCcccHHHHHHHHHcCCCHHHHHHHHHHhhccc
Confidence 5799999999999999999977 579999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCcccCccccCCChhhHHHHHHHHHHHHhCCCeeecccCcccccCCCCccchhhhhcCCcCCCCCCCceEeeccccc
Q 046127 168 WKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLYCVNCEEYKDEKELLENQCCPIHLKPCVARKEDNYF 247 (345)
Q Consensus 168 l~~lgI~~D~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~~c~~~l~d~el~~~~~c~~~~~pve~r~~~~~f 247 (345)
+..+++.++.+..|.+..+...++.++..+.++|.+|++...++||+.|++++. ..|.+|+.+++++..+|||
T Consensus 82 ~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~g~~~~~~~~~~~f 154 (361)
T d1rqga2 82 FQRAKISFDFFGRTELPIHYKLSQEFFLKAYENGHLVKKVTKQAYCEHDKMFLP-------DRFAICGRPISFRDSAHYY 154 (361)
T ss_dssp HHHHTCCCSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEBTTTTBCCC-------GGGTTTCCBCEEEEEEEEE
T ss_pred ccccccccccccccccchhhhhhhhhhhhccccCceeeeeeeeecccccceecc-------cccccCCCcccccccceEE
Confidence 999999999999999999999999999999999999999999999999998866 4688899999999999999
Q ss_pred cchhHhHHHHHHHHhcCCCcccChHHHHHHHHHHhcCCCCcccccCCCCCCcccCCC----CCCcEEEecCchhHHHHhc
Q 046127 248 FALSKYQKLLEDTLTENPDFVQPSFRLNEVQGWIKSGLRDFSISRASVDWGIPVPND----NKQTIYVWFDALLGYISAL 323 (345)
Q Consensus 248 ~~l~~~~~~L~e~l~~~~~~~~P~~~~~~~~~wl~~gL~D~~ISR~~~~WGIpvP~~----~~~~iyVWfdal~gYls~~ 323 (345)
|+++.+++.+.+.+.... +.|. ..+.+.+++.++|.||+|||+ ..||+++|.. .++++++|++++..|.+..
T Consensus 155 ~~~~~~~~~l~~~~~~~~--~~~~-~~~~~~~~~~~~l~d~~isr~-~~wg~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (361)
T d1rqga2 155 IKMQDFAERLKRWIEKQP--WKPN-VKNMVLSWIEEGLEERAITRD-LNWGIPVPLDEEDMKGKVLYVWFEAPIGYISIT 230 (361)
T ss_dssp ECGGGTHHHHHHHHHSSC--CCHH-HHHHHHHHHTTCCCCEECEEC-CSSSCBCSCCCSSSTTCEECHHHHGGGHHHHHH
T ss_pred Eecchhhhhhhhcccccc--cccc-hhhhhhhcccccccccccccc-ccccccCccccccCCCeEEEeeccccccccccc
Confidence 999999999999998873 3454 567778899899999999998 7999999953 5789999999999998877
Q ss_pred CCC
Q 046127 324 SED 326 (345)
Q Consensus 324 ~~~ 326 (345)
.++
T Consensus 231 ~~~ 233 (361)
T d1rqga2 231 IEH 233 (361)
T ss_dssp HHH
T ss_pred ccC
Confidence 654
|
| >d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Methionyl-tRNA synthetase (MetRS) species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=1.1e-39 Score=309.88 Aligned_cols=239 Identities=50% Similarity=0.893 Sum_probs=218.9
Q ss_pred CCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 046127 88 ADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTL 167 (345)
Q Consensus 88 ~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~ 167 (345)
+++|+||+|+|||||+|||||+|+++++|+++||+|++||+|.+++|+|++|++|+.+|+++|+++++++..+...|+++
T Consensus 2 ~~~~~~~~~~PypnG~lHiGH~r~~v~~D~l~R~lr~~G~~V~~v~g~D~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~ 81 (348)
T d2d5ba2 2 EKVFYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAAGEDPKAFVDRVSGRFKRA 81 (348)
T ss_dssp CCEEEEECCCEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred CCCEEEecCCCCCCCCcccccCHHHHHHHHHHHHHHhcCCCeEecCcCCCCCHHHHHHHHHcCCCHHHhhhhHHHHHHHH
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCcccCccccCCChhhHHHHHHHHHHHHhCCCeeecccCcccccCCCCccchhhhhcCCcCCCCCCCceEeeccccc
Q 046127 168 WKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLYCVNCEEYKDEKELLENQCCPIHLKPCVARKEDNYF 247 (345)
Q Consensus 168 l~~lgI~~D~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~~c~~~l~d~el~~~~~c~~~~~pve~r~~~~~f 247 (345)
++.+||.+|.|+++....+...++.++.++.++|++|++...+.+|+.|++++.+.++.+ ..|..++..++.....+++
T Consensus 82 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 160 (348)
T d2d5ba2 82 WDLLGIAYDDFIRTTEERHKKVVQLVLKKVYEAGDIYYGEYEGLYCVSCERFYTEKELVE-GLCPIHGRPVERRKEGNYF 160 (348)
T ss_dssp HHHTTCCCSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCTTTSBT-TBCTTTCSBCEEEEEEEEE
T ss_pred HHhcCccccceeecccchhhHHHHHHHHHHHhhCccccccccccccccccceeccccccc-cccccCCCceEEecccccc
Confidence 999999999999999999999999999999999999999999999999999999888875 6788999999999999999
Q ss_pred cchhHhHHHHHHHHhcCCCcccChHHHHHHHHHHhcCCCCcccccC--CCCCCcccCCCCCCcEEEecCchhHHHHhcCC
Q 046127 248 FALSKYQKLLEDTLTENPDFVQPSFRLNEVQGWIKSGLRDFSISRA--SVDWGIPVPNDNKQTIYVWFDALLGYISALSE 325 (345)
Q Consensus 248 ~~l~~~~~~L~e~l~~~~~~~~P~~~~~~~~~wl~~gL~D~~ISR~--~~~WGIpvP~~~~~~iyVWfdal~gYls~~~~ 325 (345)
+.++.+.+.+.+.....+........++....+...+|.||.+.++ ...||++.|.++++++++||++.++|.++.+.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 240 (348)
T d2d5ba2 161 FRMEKYRPWLQEYIQENPDLIRPEGYRNEVLAMLAEPIGDLSISRPKSRVPWGIPLPWDENHVTFVWFDALLNYVSALDY 240 (348)
T ss_dssp ECGGGGHHHHHHHHHTCTTSEESHHHHHHHHHHHTSCCCCEECEEETTTCCSSCEETTEEEEEECHHHHHHTHHHHTTTT
T ss_pred cchHhhhhhHHHhhhccccccccccccccccccccccccccccccccccCCCCcccccCCcccccchhccchhhhhhhcC
Confidence 9999999999999887654455555666677888888887765443 26899999999999999999999999999876
Q ss_pred CC
Q 046127 326 DR 327 (345)
Q Consensus 326 ~~ 327 (345)
..
T Consensus 241 ~~ 242 (348)
T d2d5ba2 241 PE 242 (348)
T ss_dssp TT
T ss_pred Cc
Confidence 54
|
| >d1li5a2 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysRS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Cysteinyl-tRNA synthetase (CysRS) species: Escherichia coli [TaxId: 562]
Probab=99.92 E-value=2.1e-26 Score=217.00 Aligned_cols=133 Identities=22% Similarity=0.240 Sum_probs=116.6
Q ss_pred CCCCCCCCCCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHH
Q 046127 80 TDKSGTEPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDV 159 (345)
Q Consensus 80 ~~~~~~~~~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~ 159 (345)
+|.+..+++.+++|| .|||||++||||+|+++++|+++|++|+.|++|.+++|+|+||.+|...|++.++++++++++
T Consensus 14 ~f~~~~~~~~~~yv~--Gptv~g~~HIGH~R~av~gD~laR~lr~~G~~V~~~~~~dd~G~~i~~~a~~~~~~~~e~~~~ 91 (315)
T d1li5a2 14 EFKPIHAGEVGMYVC--GITVYDLCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANENGESFVAMVDR 91 (315)
T ss_dssp ECCCSSTTEEEEEEC--CCBSSSCCBHHHHHHHHHHHHHHHHHHHHTCEEEEEECBBCCSHHHHHHHHHTTCCHHHHHHH
T ss_pred eeecCCCCeEEEEec--CCcCCCCcccchhHHHHHHHHHHHHHHHcCCcEEEEecccchhHHHHHHHhhhhhcccccccc
Confidence 454444556777775 469999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCcccCccccCCChhhHHHHHHHHHHHHhCCCeeecccCcccccC
Q 046127 160 VSQAYKTLWKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYKADYEGLYCVN 215 (345)
Q Consensus 160 ~~~~~~~~l~~lgI~~D~f~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~~~yc~~ 215 (345)
+..++.++++.++|..+.++.+.+ .+...+...+.+|..+|.+|.......||..
T Consensus 92 ~~~~~~~~~~~~~i~~~~~~~~~~-~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~ 146 (315)
T d1li5a2 92 MIAEMHKDFDALNILRPDMEPRAT-HHIAEIIELTEQLIAKGHAYVADNGDVMFDV 146 (315)
T ss_dssp HHHHHHHHHHHTTCCCCSBCCBGG-GCHHHHHHHHHHHHHTTSEEECTTSCEEECG
T ss_pred chhhhhhhHHhcCCCCCcEEEecc-hhhhhhhhHHHHhhccCceeccccceEEeec
Confidence 999999999999999876665543 6777788889999999999988887777653
|
| >d1f7ua2 c.26.1.1 (A:136-483) Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Arginyl-tRNA synthetase (ArgRS) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.69 E-value=2.4e-17 Score=157.11 Aligned_cols=128 Identities=16% Similarity=0.184 Sum_probs=105.8
Q ss_pred CCCCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHh-----------------
Q 046127 86 EPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAAD----------------- 148 (345)
Q Consensus 86 ~~~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~----------------- 148 (345)
.++++++|...+|||+|||||||+|++++||+|+|+++..||+|.....++|.|.+|...+..
T Consensus 5 ~~~kki~vE~~SaNpt~plHvGH~R~aiiGd~larlL~~~G~~V~re~yvnD~G~Qi~~l~~~~~~~~~~~~~~~~~~~~ 84 (348)
T d1f7ua2 5 VENKKVIIEFSSPNIAKPFHAGHLRSTIIGGFLANLYEKLGWEVIRMNYLGDWGKQFGLLAVGFERYGNEEALVKDPIHH 84 (348)
T ss_dssp SSCCEEEEECCCCBTTSCCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHHHHCCHHHHHHCHHHH
T ss_pred CCCCEEEEEecCCCCCCCcchhhhhhHHHHHHHHHHHHHCCCeEEEEEEECCchHHHHHHHHHHHHhccccccccccchh
Confidence 457899999999999999999999999999999999999999999999999999987543321
Q ss_pred --------------CC----------------------CCH------HHHHHHHHHHHHHHHhhcCcccCccccCCChhh
Q 046127 149 --------------GG----------------------SSP------SEHCDVVSQAYKTLWKDLDIAYDKFIRTTEPKH 186 (345)
Q Consensus 149 --------------~g----------------------~~p------~~~~~~~~~~~~~~l~~lgI~~D~f~~T~~~~~ 186 (345)
.+ .++ +.+++...+.+++++++|||.+|.|..+++ .+
T Consensus 85 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~l~~~~~~~~~l~i~fD~~~~Es~-~~ 163 (348)
T d1f7ua2 85 LFDVYVRINKDIEEEGDSIPLEQSTNGKAREYFKRMEDGDEEALKIWKRFREFSIEKYIDTYARLNIKYDVYSGESQ-VS 163 (348)
T ss_dssp HHHHHHHHHHHHHHSTTSSCHHHHSSHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSEEEEGGG-CC
T ss_pred HHHHHHHHHhhhcccchhhhhhhhhHhHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccc-cc
Confidence 00 011 135577788999999999999998877765 34
Q ss_pred HHHHHHHHHHHHhCCCeeecccCccccc
Q 046127 187 EAIVKEFYSSVLANGDIYKADYEGLYCV 214 (345)
Q Consensus 187 ~~~v~~~~~~L~~kG~iy~~~~~~~yc~ 214 (345)
......++..|.++|++|+.++..|++.
T Consensus 164 ~~~~~~v~~~L~~~~~~~~~~ga~~~~~ 191 (348)
T d1f7ua2 164 KESMLKAIDLFKEKGLTHEDKGAVLIDL 191 (348)
T ss_dssp HHHHHHHHHHHHHTTCEEEETTEEEEEG
T ss_pred ccchHHHHHHHHhhccccccCCcccccc
Confidence 4455679999999999999999888863
|
| >d1iq0a2 c.26.1.1 (A:97-466) Arginyl-tRNA synthetase (ArgRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Arginyl-tRNA synthetase (ArgRS) species: Thermus thermophilus [TaxId: 274]
Probab=99.63 E-value=3e-16 Score=150.62 Aligned_cols=124 Identities=15% Similarity=0.227 Sum_probs=102.1
Q ss_pred CCCCCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHH---hCC-----------
Q 046127 85 TEPADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAA---DGG----------- 150 (345)
Q Consensus 85 ~~~~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~---~~g----------- 150 (345)
|..+++++|.+.+|||+|||||||+|++++||+|+|+++..||+|.....+.|.|++|...+. ..+
T Consensus 3 p~~~~~i~vEf~SpN~~kplHvGHlRs~iiGd~laril~~~G~~V~r~nyigD~G~Qi~~l~~~~~~~~~~~~~~~~~~~ 82 (370)
T d1iq0a2 3 PRRPGVVLVEHTSVNPNKELHVGHLRNIALGDAIARILAYAGREVLVLNYIDDTGRQAAETLFALRHYGLTWDGKEKYDH 82 (370)
T ss_dssp CCEEEEEEEECCCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTEEEEEEEEECTTSHHHHHHHHHHHHTTCCCCSSSCHHH
T ss_pred CCCCCeEEEEecCCCCCCCcchhhhhhHHHHHHHHHHHHHcCCEEEEEEeECCchHHHHHHHHHHHHhccccccccchhh
Confidence 456789999999999999999999999999999999999999999999999999998654332 111
Q ss_pred -------------------------------CCHHHHHHHHHHHHHHHHhhcCcccCccccCCChhhHHHHHHHHHHHHh
Q 046127 151 -------------------------------SSPSEHCDVVSQAYKTLWKDLDIAYDKFIRTTEPKHEAIVKEFYSSVLA 199 (345)
Q Consensus 151 -------------------------------~~p~~~~~~~~~~~~~~l~~lgI~~D~f~~T~~~~~~~~v~~~~~~L~~ 199 (345)
.+..+..++++..++++|.+||+.||.++.+++....+.+..++..|.+
T Consensus 83 ~~~~~y~~~~~~~~~~~~~~~~~e~~~~le~~~~~~~~~~~l~~~~~~l~~l~v~fD~~~~Es~l~~~~~~~~~i~~l~~ 162 (370)
T d1iq0a2 83 FAGRAYVRLHQDPEYERLQPAIEEVLHALERGELREEVNRILLAQMATMHALNARYDLLVWESDIVRAGLLQKALALLEQ 162 (370)
T ss_dssp HHHHHHHHHHHCTTTGGGHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHTTCCCSEEEEHHHHHHTTHHHHHHHHHTT
T ss_pred hhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhccceeeceeeeecccccccchhhhHhhhhh
Confidence 0111334566677889999999999998877765666788999999999
Q ss_pred CCCeeeccc
Q 046127 200 NGDIYKADY 208 (345)
Q Consensus 200 kG~iy~~~~ 208 (345)
+|.+|+.+.
T Consensus 163 ~~~~~~~~~ 171 (370)
T d1iq0a2 163 SPHVFRPRE 171 (370)
T ss_dssp STTEECCSS
T ss_pred ccceeeccc
Confidence 999998763
|
| >d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Class I lysyl-tRNA synthetase species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.48 E-value=6.2e-15 Score=134.05 Aligned_cols=59 Identities=15% Similarity=0.065 Sum_probs=52.3
Q ss_pred CCCCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHH
Q 046127 87 PADPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAA 146 (345)
Q Consensus 87 ~~~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A 146 (345)
.+++++|+ ++|||||+|||||+|+++++|+++|++|+.|++|.+++++|++|.++...+
T Consensus 16 ~k~~~v~~-~~~~PnG~lHIGHlr~~i~gD~laR~lr~~G~~V~~~~~~dd~g~~~~~~~ 74 (317)
T d1irxa2 16 EKEKYVVE-SGITPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYDRFRKVPR 74 (317)
T ss_dssp CCSEEEEE-EEECCSSCCCHHHHHHHHHHHHHHHHHHTTTCEEEEEEEECTTSBCCCCCS
T ss_pred CCCeEEEE-CCCCCCCCccccccHHHHHHHHHHHHHHHcCCCEEEEEEeccCcchhhhHH
Confidence 45666666 678999999999999999999999999999999999999999998875544
|
| >d1j09a2 c.26.1.1 (A:1-305) Glutamyl-tRNA synthetase (GluRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Glutamyl-tRNA synthetase (GluRS) species: Thermus thermophilus [TaxId: 274]
Probab=99.01 E-value=1.4e-10 Score=107.70 Aligned_cols=99 Identities=22% Similarity=0.265 Sum_probs=76.8
Q ss_pred EEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHhh
Q 046127 91 FVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKD 170 (345)
Q Consensus 91 ~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~~ 170 (345)
++||.-+|.|||+|||||+|++++.+.+|| ...| .++.-+||.+.. ....++.+.|.++|+.
T Consensus 1 ~vvtRfaPsPtG~lHiG~~rtal~n~~~Ak--~~~G---~~iLRidDtD~~-------------R~~~~~~~~I~~dL~w 62 (305)
T d1j09a2 1 MVVTRIAPSPTGDPHVGTAYIALFNYAWAR--RNGG---RFIVRIEDTDRA-------------RYVPGAEERILAALKW 62 (305)
T ss_dssp CCEEEECCCCSSSCBHHHHHHHHHHHHHHH--HTTC---EEEECBCCCCTT-------------SCCTTHHHHHHHHHHH
T ss_pred CeEEecCCCCCCcccHHHHHHHHHHHHHHH--HcCC---EEEEEeCcCCCc-------------cCchHHHHHHHHHHHH
Confidence 468889999999999999999999999999 4455 355557777621 1223578899999999
Q ss_pred cCcccCcccc-------CCChhhHHHHHHHHHHHHhCCCeeecc
Q 046127 171 LDIAYDKFIR-------TTEPKHEAIVKEFYSSVLANGDIYKAD 207 (345)
Q Consensus 171 lgI~~D~f~~-------T~~~~~~~~v~~~~~~L~~kG~iy~~~ 207 (345)
|||.+|..+. ...+.+.+...+.+.+|.++|++|.-.
T Consensus 63 Lgi~wD~~p~~~~~~~~~~qS~r~~~y~~~~~~Li~~g~aY~C~ 106 (305)
T d1j09a2 63 LGLSYDEGPDVGGPHGPYRQSERLPLYQKYAEELLKRGWAYRAF 106 (305)
T ss_dssp TTCCCSBBTTTBCTTCCCBGGGCHHHHHHHHHHHHHHTSEEEEC
T ss_pred HhcCcccCCcCCCCCcceeeecchhHHHHHHHHHHHcCCeeecc
Confidence 9999995321 124477888899999999999999543
|
| >d1nzja_ c.26.1.1 (A:) Glutamyl-Q tRNA-Asp synthetase YadB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Glutamyl-Q tRNA-Asp synthetase YadB species: Escherichia coli [TaxId: 562]
Probab=98.84 E-value=9.7e-10 Score=101.06 Aligned_cols=95 Identities=11% Similarity=0.111 Sum_probs=72.2
Q ss_pred EEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhc
Q 046127 92 VLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKDL 171 (345)
Q Consensus 92 ~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~~l 171 (345)
+||.-.|.|||+|||||+|++++.-.+|| +..|. ++.-+||.+.+ ....++.+.|.++|+.|
T Consensus 3 ~~tRFAPsPtG~lHiG~~rtal~n~~~Ak--~~~G~---~iLRieDtD~~-------------R~~~~~~~~I~~dL~wl 64 (286)
T d1nzja_ 3 YIGRFAPSPSGELHFGSLIAALGSYLQAR--ARQGR---WLVRIEDIDPP-------------REVPGAAETILRQLEHY 64 (286)
T ss_dssp CEEEECCCTTSCCCHHHHHHHHHHHHHHH--HTTCE---EEEEECCSCGG-------------GSCTTHHHHHHHHHHHT
T ss_pred ceEeeCcCCCCcccHHHHHHHHHHHHHHH--HhCCE---EEEEeCCCCCC-------------cCCHHHHHHHHHHHHHh
Confidence 57888999999999999999999999998 45664 44445555422 12235789999999999
Q ss_pred CcccCccccCCChhhHHHHHHHHHHHHhCCCeee
Q 046127 172 DIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYK 205 (345)
Q Consensus 172 gI~~D~f~~T~~~~~~~~v~~~~~~L~~kG~iy~ 205 (345)
|+.+|.-+.. .+.+.+.-.+++.+|.++|.+|.
T Consensus 65 gl~~d~~~~~-QS~r~~~Y~~~~~~L~~~g~aY~ 97 (286)
T d1nzja_ 65 GLHWDGDVLW-QSQRHDAYREALAWLHEQGLSYY 97 (286)
T ss_dssp TCCCSSCCEE-GGGCHHHHHHHHHHHHHTTCEEE
T ss_pred hhccccccch-hHHHHHHHHHHHHHHHHcCCccc
Confidence 9999942211 23566777889999999999994
|
| >d1gtra2 c.26.1.1 (A:8-338) Glutaminyl-tRNA synthetase (GlnRS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Glutaminyl-tRNA synthetase (GlnRS) species: Escherichia coli [TaxId: 562]
Probab=98.80 E-value=2.4e-09 Score=100.39 Aligned_cols=98 Identities=16% Similarity=0.091 Sum_probs=73.6
Q ss_pred CCEEEEccCCCCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 046127 89 DPFVLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLW 168 (345)
Q Consensus 89 ~~~~I~~~~PypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l 168 (345)
.+=++|.-.|.|||+|||||+|++++...+|| +..|.=++++ ||.+ +......+.+.|.++|
T Consensus 17 ~~~v~tRFAPSPTG~LHiG~~rtal~n~l~Ak--~~~G~fiLRI---EDtD-------------~~R~~~~~~~~I~~dL 78 (331)
T d1gtra2 17 HTTVHTRFPPEPNGYLHIGHAKSICLNFGIAQ--DYKGQCNLRF---DDTN-------------PVKEDIEYVESIKNDV 78 (331)
T ss_dssp CSSCEEEECCCSSSCCBHHHHHHHHHHHHHHH--HTTCEEEEEE---CCCC-------------GGGCCHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEEe---CcCC-------------CCcccchHHHHHHHHH
Confidence 34466777789999999999999999999999 4555544444 4332 3334456789999999
Q ss_pred hhcCcccCccccCCChhhHHHHHHHHHHHHhCCCeee
Q 046127 169 KDLDIAYDKFIRTTEPKHEAIVKEFYSSVLANGDIYK 205 (345)
Q Consensus 169 ~~lgI~~D~f~~T~~~~~~~~v~~~~~~L~~kG~iy~ 205 (345)
+.|||.+|.-+.- .+.+.+.-++.+.+|.++|++|.
T Consensus 79 ~WLGl~wD~~~~~-QS~r~~~Y~~~~~~L~~~G~aY~ 114 (331)
T d1gtra2 79 EWLGFHWSGNVRY-SSDYFDQLHAYAIELINKGLAYV 114 (331)
T ss_dssp HHTTCCCSSSCEE-GGGGHHHHHHHHHHHHHTTSEEE
T ss_pred HHHhcccccccee-cchHHHHHHHHHHhhhhcCCccc
Confidence 9999999833211 23567777888999999999994
|
| >d1j1ua_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Tyrosyl-tRNA synthetase (TyrRS) species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=95.79 E-value=0.016 Score=52.07 Aligned_cols=69 Identities=10% Similarity=0.152 Sum_probs=43.1
Q ss_pred CCCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhcCcccCcc
Q 046127 99 YVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKDLDIAYDKF 178 (345)
Q Consensus 99 ypnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~~lgI~~D~f 178 (345)
-|||.|||||.. ....+.++++. |++|++..|- .|+ .-......+-...+.......+.++|++.+.+
T Consensus 36 ~PTG~lHlGh~v---~~~~~~~lq~~-g~~~~~~IaD-~~a-------~~~~~~~~~~~~~~~~~~~~~~~a~G~~~~~~ 103 (306)
T d1j1ua_ 36 EPSGKIHLGHYL---QIKKMIDLQNA-GFDIIILLAD-LHA-------YLNQKGELDEIRKIGDYNKKVFEAMGLKAKYV 103 (306)
T ss_dssp CCCSSCBHHHHH---HHHHHHHHHHT-TEEEEEEECH-HHH-------HHTTCCCHHHHHHHHHHHHHHHHHTTCCCEEE
T ss_pred CCCCcchHHHHH---HHHHHHHHHHC-CCcEEEEecc-HHH-------HhhhccchhhhhhhhhHHHHHHHhhhcccccc
Confidence 356999999976 33456666665 9999886652 221 11111223345555667777889999987643
Q ss_pred c
Q 046127 179 I 179 (345)
Q Consensus 179 ~ 179 (345)
.
T Consensus 104 ~ 104 (306)
T d1j1ua_ 104 Y 104 (306)
T ss_dssp E
T ss_pred c
Confidence 3
|
| >d1n3la_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Tyrosyl-tRNA synthetase (TyrRS) species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.91 E-value=0.039 Score=50.01 Aligned_cols=68 Identities=13% Similarity=0.167 Sum_probs=40.7
Q ss_pred CCCcCchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCC--CHHHHHHHHHHHHHHHHhhcCcccC
Q 046127 100 VNAPPHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGS--SPSEHCDVVSQAYKTLWKDLDIAYD 176 (345)
Q Consensus 100 pnG~LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~--~p~~~~~~~~~~~~~~l~~lgI~~D 176 (345)
|||+|||||..+++. +.++++ .|++|++..|-. |+.- ....+. ..+...+.+...+...+.++|++++
T Consensus 41 PTg~lHlG~~l~~~~---l~~~q~-~g~~~~~~IaD~-~a~~----~~~~~~~~~~~~~~~~~~~~~~~~~~a~g~d~~ 110 (339)
T d1n3la_ 41 TTGKPHVAYFVPMSK---IADFLK-AGCEVTILFADL-HAYL----DNMKAPWELLELRVSYYENVIKAMLESIGVPLE 110 (339)
T ss_dssp CSSCCBGGGHHHHHH---HHHHHH-TTCEEEEEECHH-HHHH----TTTTSCHHHHHHHHHHHHHHHHHHHHHHTCCCT
T ss_pred CCCccHHHHHHHHHH---HHHHHH-CCCcEEEEecch-hhhc----cCCCCchHHHHHHHHHHHHHHHHHHHhhccChH
Confidence 579999999877553 455554 699998866532 2100 000000 0122344556667788889999987
|
| >d1r6ta2 c.26.1.1 (A:82-467) Tryptophanyl-tRNA synthetase (TrpRS) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Tryptophanyl-tRNA synthetase (TrpRS) species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.54 E-value=0.031 Score=51.94 Aligned_cols=78 Identities=13% Similarity=0.012 Sum_probs=50.8
Q ss_pred CCCCEEEEccCCCCCCc-CchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHH
Q 046127 87 PADPFVLTTPLYYVNAP-PHMGSAYTTIAADAIARFQRLLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYK 165 (345)
Q Consensus 87 ~~~~~~I~~~~PypnG~-LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~ 165 (345)
++++++|.++. -|+|+ |||||..+.+. +..++...|..|++. ..|+|- ......+++++ .++..++.
T Consensus 71 ~gkp~~vytG~-~PSg~~lHlGh~v~~~~---~~~~q~~~~~~v~i~-iaD~~a------~~~~~~~~~e~-~~~~~e~~ 138 (386)
T d1r6ta2 71 NKKPFYLYTGR-GPSSEAMHVGHLIPFIF---TKWLQDVFNVPLVIQ-MTDDEK------YLWKDLTLDQA-YGDAVENA 138 (386)
T ss_dssp TTCCEEEEEEE-CCCTTCCBGGGHHHHHH---HHHHHHHHTCCEEEE-ECHHHH------HHHSSCCHHHH-HHHHHHHH
T ss_pred cCCCeEEEecc-CCCCchhHHHHHHHHHH---HHHHHHhcccceEEE-ecchHh------hhcccCCHHHH-HHHHHHHH
Confidence 35778877766 57896 89999976653 334445567777654 344431 11235567654 45556777
Q ss_pred HHHhhcCcccC
Q 046127 166 TLWKDLDIAYD 176 (345)
Q Consensus 166 ~~l~~lgI~~D 176 (345)
+++-++|++.+
T Consensus 139 ~~~lA~GlDp~ 149 (386)
T d1r6ta2 139 KDIIACGFDIN 149 (386)
T ss_dssp HHHHTTCCCTT
T ss_pred HHHHHhCCCcc
Confidence 78889999987
|
| >d1h3fa1 c.26.1.1 (A:5-347) Tyrosyl-tRNA synthetase (TyrRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Tyrosyl-tRNA synthetase (TyrRS) species: Thermus thermophilus [TaxId: 274]
Probab=92.28 E-value=0.16 Score=46.00 Aligned_cols=41 Identities=29% Similarity=0.412 Sum_probs=27.6
Q ss_pred CCEEEEccCCCCCCc-CchhHHHHHHHHHHHHHHHHHcCCeEEEEcC
Q 046127 89 DPFVLTTPLYYVNAP-PHMGSAYTTIAADAIARFQRLLGKKVIFITG 134 (345)
Q Consensus 89 ~~~~I~~~~PypnG~-LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G 134 (345)
+++.|.++. -|||+ |||||..+.+. .+++...|+++++..|
T Consensus 32 ~~~~vY~G~-~PTg~sLHlGh~v~~~~----~~~lq~~g~~~~~~ia 73 (343)
T d1h3fa1 32 RPLTVKLGA-DPTRPDLHLGHAVVLRK----MRQFQELGHKVVLIIG 73 (343)
T ss_dssp SCCEEEEEE-CTTCCSCBHHHHHHHHH----HHHHHHTTCEEEEEEC
T ss_pred CCCEEEEee-cCCCCcccHHHHHHHHH----HHHHHHCCCceEEEEe
Confidence 455555554 47795 99999876432 4455567999988764
|
| >d1i6la_ c.26.1.1 (A:) Tryptophanyl-tRNA synthetase (TrpRS) {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Tryptophanyl-tRNA synthetase (TrpRS) species: Bacillus stearothermophilus [TaxId: 1422]
Probab=91.18 E-value=0.24 Score=44.25 Aligned_cols=68 Identities=13% Similarity=0.122 Sum_probs=42.8
Q ss_pred EEccCCCCCCcCchhHHHHHHHHHHHHHHHH-HcCCeEEEEcCCCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhc
Q 046127 93 LTTPLYYVNAPPHMGSAYTTIAADAIARFQR-LLGKKVIFITGTDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKDL 171 (345)
Q Consensus 93 I~~~~PypnG~LHIGHar~~i~~DvlaR~lr-~~G~~V~~v~G~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~~l 171 (345)
++.-- |+|.+||||..+++ ..+.. ..|+++++.. .|.|.. ....++.++ .++...+..++-++
T Consensus 5 ~tG~~--PSG~~HlG~~~g~i-----~~~~~lq~~~~~~i~i-AD~hal-------t~~~~~~~l-~~~~~~~~~~~lA~ 68 (326)
T d1i6la_ 5 FSGIQ--PSGVITIGNYIGAL-----RQFVELQHEYNCYFCI-VDQHAI-------TVWQDPHEL-RQNIRRLAALYLAV 68 (326)
T ss_dssp EEEEC--CCSCCBHHHHHHTH-----HHHHHHTTTSEEEEEE-CHHHHT-------TSCCCHHHH-HHHHHHHHHHHHHT
T ss_pred EeCcC--CCCccHHHHHHHHH-----HHHHHHhCCCCEEEEe-ehHHhh-------ccCCCHHHH-HHHHHHHHHHhhhh
Confidence 44444 57999999976543 22222 3488886544 365531 233466554 34566777899999
Q ss_pred CcccC
Q 046127 172 DIAYD 176 (345)
Q Consensus 172 gI~~D 176 (345)
|++++
T Consensus 69 G~dp~ 73 (326)
T d1i6la_ 69 GIDPT 73 (326)
T ss_dssp TCCTT
T ss_pred hcccc
Confidence 99987
|
| >d1iq0a3 d.67.2.1 (A:1-96) Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: RRF/tRNA synthetase additional domain-like superfamily: Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain family: Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain domain: Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain species: Thermus thermophilus [TaxId: 274]
Probab=90.42 E-value=0.023 Score=42.15 Aligned_cols=42 Identities=17% Similarity=0.280 Sum_probs=37.0
Q ss_pred cchHHHHHH----HHHHHhhchhcchhhcccccccccccccccccccccccc
Q 046127 19 LSLQKEFEE----MAARINYSIQNSLWLLNPLHSKATTHFRNRLKFRQNLFS 66 (345)
Q Consensus 19 ~~~~k~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (345)
..|+|.+++ ||++|...++.+..+ +.++..+|+|||++++.+
T Consensus 41 ~~laK~~~k~P~~iA~~I~~~l~~~~~i------~~v~~~gpFiNf~l~~~~ 86 (96)
T d1iq0a3 41 FALAKELRKPPQAIAQELKDRLPLPEFV------EEAVPVGGYLNFRLRTEA 86 (96)
T ss_dssp SHHHHHTTSCHHHHHHHHHHTCCCCTTE------EEEEEETTEEEEEECHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHhccCccc------ceeEeeCCeEEEEECHHH
Confidence 458899887 999999999998888 889999999999998854
|
| >d1jila_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Tyrosyl-tRNA synthetase (TyrRS) species: Staphylococcus aureus [TaxId: 1280]
Probab=90.12 E-value=0.092 Score=47.44 Aligned_cols=69 Identities=16% Similarity=0.139 Sum_probs=42.6
Q ss_pred CCCCc-CchhHHHHHHHHHHHHHHHHHcCCeEEEEcC--CCCcChHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhcC
Q 046127 99 YVNAP-PHMGSAYTTIAADAIARFQRLLGKKVIFITG--TDEHGEKIAAAAADGGSSPSEHCDVVSQAYKTLWKDLD 172 (345)
Q Consensus 99 ypnG~-LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G--~D~~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~l~~lg 172 (345)
=||++ |||||+-+.. .-|.+...||++..+.| +...|+|--...++.-.+. +.++.+.+.++.++..+.
T Consensus 39 DPTa~sLHlGhlv~l~----~l~~~q~~Gh~~i~LiG~~T~~iGDPsgk~~~R~~l~~-~~i~~n~~~~~~~~~~~~ 110 (323)
T d1jila_ 39 DPTADSLHIGHLLPFL----TLRRFQEHGHRPIVLIGGGTGMIGDPSGKSEERVLQTE-EQVDKNIEGISKQMHNIF 110 (323)
T ss_dssp CCSSSSCBHHHHHHHH----HHHHHHHTTCEEEEEECTTGGGTCCCTTCSSCCCCCCH-HHHHHHHHHHHHHHHHHS
T ss_pred cCCCccccHHHHHHHH----HHHHHHHhCCceEEeehhhhhhccCCCccchhhhhhhH-HHHHHHHhhhhhhhhhhh
Confidence 46688 9999987763 34667788999998766 3345555433222223333 455666666666665553
|
| >d2ts1a_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Tyrosyl-tRNA synthetase (TyrRS) species: Bacillus stearothermophilus, nca 1503 [TaxId: 1422]
Probab=89.96 E-value=0.099 Score=47.13 Aligned_cols=75 Identities=17% Similarity=0.173 Sum_probs=48.0
Q ss_pred EEEEccCCCCCCc-CchhHHHHHHHHHHHHHHHHHcCCeEEEEcCCCC--cChHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 046127 91 FVLTTPLYYVNAP-PHMGSAYTTIAADAIARFQRLLGKKVIFITGTDE--HGEKIAAAAADGGSSPSEHCDVVSQAYKTL 167 (345)
Q Consensus 91 ~~I~~~~PypnG~-LHIGHar~~i~~DvlaR~lr~~G~~V~~v~G~D~--~G~~I~~~A~~~g~~p~~~~~~~~~~~~~~ 167 (345)
+.+..+. =||++ |||||+.+.. .-|++...||+|+.+.|... .|+|--... +......+-++.+.+.++++
T Consensus 31 ~~~Y~G~-DPTa~sLHlGhlv~l~----~l~~~q~~Gh~~i~LiG~~T~~IGDPsgk~~-eR~~l~~e~i~~n~~~~~~q 104 (319)
T d2ts1a_ 31 VTLYCGF-DPTADSLHIGHLATIL----TMRRFQQAGHRPIALVGGATGLIGDPSGKKS-ERTLNAKETVEAWSARIKEQ 104 (319)
T ss_dssp CEEEEEE-CCSSSSCBGGGHHHHH----HHHHHHHTTCEEEEEECTTGGGTCCCTTCSS-CCCCCCHHHHHHHHHHHHHH
T ss_pred ceEEEee-cCCCCcchHHHHHHHH----HHHHHHHcCCceeEEeeehhhccCCCcccch-hhhcCCHHHHHHHHHHHHHH
Confidence 3344333 35566 9999998774 35667788999999877543 455543322 23334455667777778888
Q ss_pred Hhhc
Q 046127 168 WKDL 171 (345)
Q Consensus 168 l~~l 171 (345)
+..+
T Consensus 105 ~~~~ 108 (319)
T d2ts1a_ 105 LGRF 108 (319)
T ss_dssp HTTS
T ss_pred HHHh
Confidence 7765
|