Citrus Sinensis ID: 046142

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130--
Protein Sequence
MGANRTTPICNEDALNHMSNLCDKFTLTWMEAKFLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCCCGLDKHRVHQFAASVRSRKPPDPFKGKGIMCADEVIKKKVGKKKSK
Secondary Structure (PSIPRED)
ccccccccccHHHHHHHHHHHHHHHHHHHccccEEEEEEEEEEEcHHHHHHcccEEEEEccccEEEcccccccEEEEEccccEEEEEEccHHHHHHHHHHHHccccccccccccEEccccEEEEcccccccc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEEEccccEEEEEccEEEEEccccccEEEcccccEEEEEEEccEEEEEEccHHHHHHHHHHHHcccccccccccEEEEccccccEEccccccc
Coil and Loop (DISEMBL)
mganrttpicnedALNHMSNLCDKFTLTWMEAKFLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKnnvvcccgldkhrvHQFAAsvrsrkppdpfkgkgimcADEVIKKkvgkkksk
Flexible Loop (DISEMBL)
mganrttpicnedalNHMSNLCDKFTLTWMEAKFLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCCCGLDKHRVHQFaasvrsrkppdpfkgkgimcadevikkkvgkkksk
Low Complexity Region (SEG)
MGANRTTPICNEDALNHMSNLCDKFTLTWMEAKFLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCCCGLDKHRVHQFAASVRSRKPPDPFKGKGIMCADEVIkkkvgkkksk
Disordered region (IsUnstruct)
********ICNEDALNHMSNLCDKFTLTWMEAKFLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCCCGLDKHRVHQFAA***************IMC***************
Disordered Region (DISOPRED)
***NR***ICNEDALNHMSNLCDKFTLTWMEAKFLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCCCGLDKHRVHQFAASVRSRKPPDPFKGKGIMCADEVIKK*VGK****
Disordered Region (DISEMBL)
MGANRTTPICNEDALNHMSNLCDKFTLTWMEAKFLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCCCGLDKHRVHQFAASVRSRKPPDPFKGKGIMCADEVIK*********
Disordered Region (DISPRO)
MGANRTTPICNEDALNHMSNLCDKFTLTWMEAKFLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCCCGLDKHRVHQFAASVRSRKPPDPFKGKGIMCADEVIKKKV******
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGANRTTPICNEDALNHMSNLCDKFTLTWMEAKFLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCCCGLDKHRVHQFAASVRSRKPPDPFKGKGIMCADEVIKKKVGKKKSK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	132	2.2.26 [Sep-21-2011]
P26861	101	60S ribosomal protein L6,	N/A	no	0.765	1.0	0.584	4e-29
Q8EUC8	183	50S ribosomal protein L6	yes	no	0.848	0.612	0.412	3e-19
B2IK77	177	50S ribosomal protein L6	yes	no	0.719	0.536	0.474	4e-19
Q1QN15	177	50S ribosomal protein L6	yes	no	0.719	0.536	0.474	8e-19
Q28UT9	177	50S ribosomal protein L6	yes	no	0.840	0.627	0.442	1e-18
Q3SSV1	177	50S ribosomal protein L6	yes	no	0.719	0.536	0.474	1e-18
Q1GPB4	177	50S ribosomal protein L6	yes	no	0.772	0.576	0.442	1e-18
Q2RQX5	177	50S ribosomal protein L6	yes	no	0.719	0.536	0.463	1e-18
Q2N9C6	177	50S ribosomal protein L6	yes	no	0.803	0.598	0.415	2e-18
Q3J8S9	178	50S ribosomal protein L6	yes	no	0.719	0.533	0.474	2e-18

>sp|P26861|RM06_MARPO 60S ribosomal protein L6, mitochondrial OS=Marchantia polymorpha GN=RPL6 PE=3 SV=2

 Score =  126 bits (317), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 59/101 (58%), Positives = 77/101 (76%)

Query: 30  MEAKFLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCCCGL 89
           MEAKF  FL+I+GVGYKA   A+G +LYLKLG+ H++ L V  +VR+FCLK N++CC G+
Sbjct: 1   MEAKFFCFLEIIGVGYKASTNAQGSILYLKLGFSHEIRLQVTPSVRVFCLKPNLICCTGM 60

Query: 90  DKHRVHQFAASVRSRKPPDPFKGKGIMCADEVIKKKVGKKK 130
           D  +V QFAA V+S KPP+ +KGKGI   +E+I KK GKKK
Sbjct: 61  DHQKVTQFAAIVKSCKPPEVYKGKGIQYRNEIIHKKQGKKK 101

Marchantia polymorpha (taxid: 3197)

>sp|Q8EUC8|RL6_MYCPE 50S ribosomal protein L6 OS=Mycoplasma penetrans (strain HF-2) GN=rplF PE=3 SV=1

 Score = 93.6 bits (231), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 47/114 (41%), Positives = 69/114 (60%), Gaps = 2/114 (1%)

Query: 15  LNHMSNLCDKFTLTWMEAKFLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAV 74
           L+  +N      L  + +   + LKIVGVGYKA     G  + L LGY H ++L +P+ +
Sbjct: 65  LHGTTNANINNALIGVNSGHTKKLKIVGVGYKA--AVNGNKINLNLGYSHPIDLEIPAGL 122

Query: 75  RIFCLKNNVVCCCGLDKHRVHQFAASVRSRKPPDPFKGKGIMCADEVIKKKVGK 128
            + C +   V   G DK  V QFAA +RS++PP+P+KGKG+  ++EVI +KVGK
Sbjct: 123 NVTCPQATEVVITGADKAVVGQFAAVIRSKRPPEPYKGKGVAYSNEVIIRKVGK 176

This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center.

Mycoplasma penetrans (strain HF-2) (taxid: 272633)

>sp|B2IK77|RL6_BEII9 50S ribosomal protein L6 OS=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=rplF PE=3 SV=1

 Score = 93.2 bits (230), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 46/97 (47%), Positives = 60/97 (61%), Gaps = 2/97 (2%)

Query: 34  FLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCCCGLDKHR 93
           F R L+I GVGYKA    +G+ L L LGY HD+   +P  + I   K   V   G+DK R
Sbjct: 83  FERKLEITGVGYKA--AVQGKNLQLSLGYSHDISFPIPDGIAIAAPKPTEVSITGIDKQR 140

Query: 94  VHQFAASVRSRKPPDPFKGKGIMCADEVIKKKVGKKK 130
           V Q AA +R+ +PP+P+KGKG+  A E I +K GKKK
Sbjct: 141 VGQIAAEIRALRPPEPYKGKGVKYAGEFIFRKEGKKK 177

This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center.

Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) (taxid: 395963)

>sp|Q1QN15|RL6_NITHX 50S ribosomal protein L6 OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=rplF PE=3 SV=1

 Score = 92.4 bits (228), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 46/97 (47%), Positives = 59/97 (60%), Gaps = 2/97 (2%)

Query: 34  FLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCCCGLDKHR 93
           F + L+IVGVGY  RA  +G+ L L LGY HDV   +P  + I   K   +   G D  R
Sbjct: 83  FEKKLEIVGVGY--RAALQGKTLQLALGYSHDVSYAIPEGITIAVPKPTEITIAGNDAQR 140

Query: 94  VHQFAASVRSRKPPDPFKGKGIMCADEVIKKKVGKKK 130
           V Q AA +R  +PP+P+KGKG+  ADE I +K GKKK
Sbjct: 141 VGQVAAEIRGYRPPEPYKGKGVKYADEFIFRKEGKKK 177

This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center.

Nitrobacter hamburgensis (strain X14 / DSM 10229) (taxid: 323097)

>sp|Q28UT9|RL6_JANSC 50S ribosomal protein L6 OS=Jannaschia sp. (strain CCS1) GN=rplF PE=3 SV=1

 Score = 92.0 bits (227), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 50/113 (44%), Positives = 67/113 (59%), Gaps = 2/113 (1%)

Query: 18  MSNLCDKFTLTWMEAKFLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIF 77
           MS    +  +T +   F + L+I GVGY  RA+ +G +L L LGY HDV+ TVP  V + 
Sbjct: 67  MSRTMVQNLVTGVTDGFKKELEITGVGY--RAQMQGNVLKLSLGYSHDVDFTVPEGVTVT 124

Query: 78  CLKNNVVCCCGLDKHRVHQFAASVRSRKPPDPFKGKGIMCADEVIKKKVGKKK 130
           C KN  V   G D+  V Q AA++R  + P+P+KGKGI    E I +K GKKK
Sbjct: 125 CPKNTEVIIEGNDQQLVGQVAANIREWRAPEPYKGKGIRYKGEYIFRKEGKKK 177

This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center.

Jannaschia sp. (strain CCS1) (taxid: 290400)

>sp|Q3SSV1|RL6_NITWN 50S ribosomal protein L6 OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=rplF PE=3 SV=1

 Score = 91.7 bits (226), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 46/97 (47%), Positives = 59/97 (60%), Gaps = 2/97 (2%)

Query: 34  FLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCCCGLDKHR 93
           F + L+I+GVGY  RA  +G+ L L LGY HDV   VP  + I   K   +   G D  R
Sbjct: 83  FEKKLEIIGVGY--RAALQGKSLQLALGYSHDVNYAVPEGITIAVPKPTEITITGNDAQR 140

Query: 94  VHQFAASVRSRKPPDPFKGKGIMCADEVIKKKVGKKK 130
           V Q AA +R  +PP+P+KGKG+  ADE I +K GKKK
Sbjct: 141 VGQVAAEIRGYRPPEPYKGKGVKYADETIFRKEGKKK 177

This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center.

Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) (taxid: 323098)

>sp|Q1GPB4|RL6_SPHAL 50S ribosomal protein L6 OS=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) GN=rplF PE=3 SV=1

 Score = 91.7 bits (226), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 46/104 (44%), Positives = 63/104 (60%), Gaps = 2/104 (1%)

Query: 27  LTWMEAKFLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCC 86
           +T +   F + L+I GVGY  RA A+G+ L L+LGY HDV+  VP  + I    N  +  
Sbjct: 76  VTGVTEGFTKVLEITGVGY--RANAQGKNLKLQLGYSHDVDFAVPDGIEIKTPDNTTIEI 133

Query: 87  CGLDKHRVHQFAASVRSRKPPDPFKGKGIMCADEVIKKKVGKKK 130
            G+DK +V Q AA +R  + P+P+KGKGI    E I +K GKKK
Sbjct: 134 SGIDKQQVGQVAAEIRRWRKPEPYKGKGIKYRGEYIFRKEGKKK 177

This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center.

Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) (taxid: 317655)

>sp|Q2RQX5|RL6_RHORT 50S ribosomal protein L6 OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=rplF PE=3 SV=1

 Score = 91.7 bits (226), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 45/97 (46%), Positives = 64/97 (65%), Gaps = 2/97 (2%)

Query: 34  FLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCCCGLDKHR 93
           F R L++VGVGYKA   A+G++L L LG+ HDV+  +P  ++I     N +   G+DK R
Sbjct: 83  FSRKLELVGVGYKA--AAQGKVLKLSLGFSHDVDFPIPEDLKITTPAPNQIEISGVDKQR 140

Query: 94  VHQFAASVRSRKPPDPFKGKGIMCADEVIKKKVGKKK 130
           V Q A+ +RS + P+P+KGKG+  A E I +K GKKK
Sbjct: 141 VGQIASEIRSYRSPEPYKGKGVKYAGEQILRKEGKKK 177

This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center.

Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) (taxid: 269796)

>sp|Q2N9C6|RL6_ERYLH 50S ribosomal protein L6 OS=Erythrobacter litoralis (strain HTCC2594) GN=rplF PE=3 SV=1

 Score = 90.9 bits (224), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 47/113 (41%), Positives = 66/113 (58%), Gaps = 7/113 (6%)

Query: 18  MSNLCDKFTLTWMEAKFLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIF 77
           +SNL +  T       F + L+I GVGY  RA+A+G+ L L+LGY HDV++ VP  + + 
Sbjct: 72  VSNLVEGVT-----EGFSKTLEISGVGY--RAQAQGKTLKLQLGYSHDVDIAVPEGLEVK 124

Query: 78  CLKNNVVCCCGLDKHRVHQFAASVRSRKPPDPFKGKGIMCADEVIKKKVGKKK 130
                 V   G+DK  V Q AA +R  + P+P+KGKGI    E + +K GKKK
Sbjct: 125 TPDQTTVIISGIDKQAVGQLAAEIRQWRKPEPYKGKGIKYQGEYVFRKEGKKK 177

This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center.

Erythrobacter litoralis (strain HTCC2594) (taxid: 314225)

>sp|Q3J8S9|RL6_NITOC 50S ribosomal protein L6 OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=rplF PE=3 SV=1

 Score = 90.9 bits (224), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 46/97 (47%), Positives = 61/97 (62%), Gaps = 2/97 (2%)

Query: 34  FLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCCCGLDKHR 93
           F R L++VGVGY  RA+ +GR L L LGY H VE T P  + I       +   G DK +
Sbjct: 84  FERRLQLVGVGY--RAQLQGRKLVLSLGYSHPVEFTAPEGLTIEVPSPTEIIVKGYDKQQ 141

Query: 94  VHQFAASVRSRKPPDPFKGKGIMCADEVIKKKVGKKK 130
           V Q AA++R  +PP+P+KGKG+  ADEV+ +K  KKK
Sbjct: 142 VGQAAANIRRFRPPEPYKGKGVRYADEVVVRKEAKKK 178

This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center.

Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) (taxid: 323261)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	132
449451529	102	PREDICTED: 60S ribosomal protein L6, mit	0.757	0.980	0.81	1e-39
255573081	102	50S ribosomal protein L6, putative [Rici	0.704	0.911	0.827	1e-37
224094789	102	predicted protein [Populus trichocarpa]	0.704	0.911	0.827	4e-37
18398731	102	large subunit ribosomal protein L6 [Arab	0.704	0.911	0.784	1e-36
297836574	102	ribosomal protein L6 family protein [Ara	0.704	0.911	0.784	2e-36
351727437	102	uncharacterized protein LOC100527168 [Gl	0.704	0.911	0.784	3e-36
358248188	102	uncharacterized protein LOC100811303 [Gl	0.704	0.911	0.784	3e-36
356535503	102	PREDICTED: 60S ribosomal protein L6, mit	0.704	0.911	0.784	4e-36
255630123	102	unknown [Glycine max]	0.704	0.911	0.774	6e-36
147792209	102	hypothetical protein VITISV_009029 [Viti	0.704	0.911	0.784	2e-35

>gi|449451529|ref|XP_004143514.1| PREDICTED: 60S ribosomal protein L6, mitochondrial-like [Cucumis sativus] gi|449496483|ref|XP_004160146.1| PREDICTED: 60S ribosomal protein L6, mitochondrial-like [Cucumis sativus]

 Score =  167 bits (424), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 81/100 (81%), Positives = 88/100 (88%)

Query: 30  MEAKFLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCCCGL 89
           MEAKF RFLKIVGVGYKARAEA GRLLYLKLGY H+VELTVP AVR+FC KNNVVCC G+
Sbjct: 1   MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGI 60

Query: 90  DKHRVHQFAASVRSRKPPDPFKGKGIMCADEVIKKKVGKK 129
           DK RVHQFAA+VRS KPP+ +KGKGIM  DEVIK+K GKK
Sbjct: 61  DKQRVHQFAAAVRSCKPPEVYKGKGIMYVDEVIKRKQGKK 100

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255573081|ref|XP_002527470.1| 50S ribosomal protein L6, putative [Ricinus communis] gi|223533110|gb|EEF34868.1| 50S ribosomal protein L6, putative [Ricinus communis]

 Score =  161 bits (407), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 77/93 (82%), Positives = 83/93 (89%)

Query: 30  MEAKFLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCCCGL 89
           MEAKF RFLKIVGVGYKARAE+EGRLLYLKLGY H+VELTVP AVR+FC KNNVVCC G+
Sbjct: 1   MEAKFFRFLKIVGVGYKARAESEGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGI 60

Query: 90  DKHRVHQFAASVRSRKPPDPFKGKGIMCADEVI 122
           DK RVHQFAASVRS KPP+ +KGKGIM  DEVI
Sbjct: 61  DKQRVHQFAASVRSCKPPEVYKGKGIMYIDEVI 93

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224094789|ref|XP_002310235.1| predicted protein [Populus trichocarpa] gi|118485475|gb|ABK94593.1| unknown [Populus trichocarpa] gi|118486815|gb|ABK95242.1| unknown [Populus trichocarpa] gi|222853138|gb|EEE90685.1| predicted protein [Populus trichocarpa]

 Score =  159 bits (401), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 77/93 (82%), Positives = 83/93 (89%)

Query: 30  MEAKFLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCCCGL 89
           MEAKF RFLKIVGVGYKARAEAEGRLL+LKLGY H+VELTVP AVR+FC KNNVVCC G+
Sbjct: 1   MEAKFFRFLKIVGVGYKARAEAEGRLLFLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGI 60

Query: 90  DKHRVHQFAASVRSRKPPDPFKGKGIMCADEVI 122
           DK RVHQFAASVRS KPP+ +KGKGIM  DEVI
Sbjct: 61  DKGRVHQFAASVRSCKPPEVYKGKGIMYIDEVI 93

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18398731|ref|NP_565438.1| large subunit ribosomal protein L6 [Arabidopsis thaliana] gi|14994247|gb|AAK73258.1| putative ribosomal protein L6 [Arabidopsis thaliana] gi|20197811|gb|AAD15497.2| putative ribosomal protein L6 [Arabidopsis thaliana] gi|21594402|gb|AAM66004.1| putative ribosomal protein L6 [Arabidopsis thaliana] gi|330251671|gb|AEC06765.1| large subunit ribosomal protein L6 [Arabidopsis thaliana]

 Score =  157 bits (397), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 73/93 (78%), Positives = 80/93 (86%)

Query: 30  MEAKFLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCCCGL 89
           MEAKF RFLKIVGVGYKARAE  GR LYLKLGY H+VEL VP AVR+FC KNNVVCC G+
Sbjct: 1   MEAKFFRFLKIVGVGYKARAEEAGRFLYLKLGYSHEVELAVPPAVRVFCFKNNVVCCTGI 60

Query: 90  DKHRVHQFAASVRSRKPPDPFKGKGIMCADEVI 122
           DK RVHQFAA+VRS KPP+P+KGKGIM  DEV+
Sbjct: 61  DKQRVHQFAATVRSCKPPEPYKGKGIMYTDEVV 93

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297836574|ref|XP_002886169.1| ribosomal protein L6 family protein [Arabidopsis lyrata subsp. lyrata] gi|297332009|gb|EFH62428.1| ribosomal protein L6 family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  156 bits (395), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 73/93 (78%), Positives = 80/93 (86%)

Query: 30  MEAKFLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCCCGL 89
           MEAKF RFLKIVGVGYKARAE  GR LYLKLGY H+VEL VP AVR+FC KNNVVCC G+
Sbjct: 1   MEAKFFRFLKIVGVGYKARAEEAGRFLYLKLGYSHEVELAVPPAVRVFCFKNNVVCCTGI 60

Query: 90  DKHRVHQFAASVRSRKPPDPFKGKGIMCADEVI 122
           DK RVHQFAA+VRS KPP+P+KGKGIM  DEV+
Sbjct: 61  DKQRVHQFAATVRSCKPPEPYKGKGIMYIDEVV 93

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351727437|ref|NP_001235881.1| uncharacterized protein LOC100527168 [Glycine max] gi|255631702|gb|ACU16218.1| unknown [Glycine max]

 Score =  156 bits (394), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 73/93 (78%), Positives = 81/93 (87%)

Query: 30  MEAKFLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCCCGL 89
           MEAKF RFLKIVGVGYKARAEA GRLLYLKLGY H+VELTVP AVR+FC KNNV+CC G+
Sbjct: 1   MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVICCTGI 60

Query: 90  DKHRVHQFAASVRSRKPPDPFKGKGIMCADEVI 122
           DK RVHQFAA+ R+ KPP+ +KGKGIM  DEVI
Sbjct: 61  DKQRVHQFAATARTCKPPEVYKGKGIMYVDEVI 93

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248188|ref|NP_001239835.1| uncharacterized protein LOC100811303 [Glycine max] gi|255634114|gb|ACU17420.1| unknown [Glycine max]

 Score =  156 bits (394), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 73/93 (78%), Positives = 81/93 (87%)

Query: 30  MEAKFLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCCCGL 89
           MEAKF RFLKIVGVGYKARAEA GRLLYLKLGY HDVEL VP AVR+FC KNNV+CC G+
Sbjct: 1   MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHDVELAVPPAVRVFCFKNNVICCTGI 60

Query: 90  DKHRVHQFAASVRSRKPPDPFKGKGIMCADEVI 122
           DK RVHQFAA+VR+ KPP+ +KGKG+M  DEVI
Sbjct: 61  DKQRVHQFAATVRTCKPPEVYKGKGLMYVDEVI 93

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356535503|ref|XP_003536284.1| PREDICTED: 60S ribosomal protein L6, mitochondrial-like [Glycine max]

 Score =  155 bits (393), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 73/93 (78%), Positives = 81/93 (87%)

Query: 30  MEAKFLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCCCGL 89
           MEAKF RFLKIVGVGYKARAEA GRLLYLKLGY H+VEL VP AVR+FC KNNV+CC G+
Sbjct: 1   MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELAVPPAVRVFCFKNNVICCTGI 60

Query: 90  DKHRVHQFAASVRSRKPPDPFKGKGIMCADEVI 122
           DK RVHQFAA+VR+ KPP+ +KGKGIM  DEVI
Sbjct: 61  DKQRVHQFAATVRTCKPPEVYKGKGIMYVDEVI 93

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255630123|gb|ACU15415.1| unknown [Glycine max]

 Score =  155 bits (391), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 72/93 (77%), Positives = 81/93 (87%)

Query: 30  MEAKFLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCCCGL 89
           MEAKF RFL+IVGVGYKARAEA GRLLYLKLGY HDVEL VP AVR+FC KNNV+CC G+
Sbjct: 1   MEAKFFRFLRIVGVGYKARAEAAGRLLYLKLGYSHDVELAVPPAVRVFCFKNNVICCTGI 60

Query: 90  DKHRVHQFAASVRSRKPPDPFKGKGIMCADEVI 122
           DK RVHQFAA+VR+ KPP+ +KGKG+M  DEVI
Sbjct: 61  DKQRVHQFAATVRTCKPPEVYKGKGLMYVDEVI 93

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147792209|emb|CAN72978.1| hypothetical protein VITISV_009029 [Vitis vinifera]

 Score =  154 bits (388), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 73/93 (78%), Positives = 82/93 (88%)

Query: 30  MEAKFLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCCCGL 89
           MEAKF RFLKIVGVG+KARAE+EGRLL+LKLGY H+VELTVP AVR+FC K NVVCC G+
Sbjct: 1   MEAKFFRFLKIVGVGFKARAESEGRLLFLKLGYSHEVELTVPPAVRVFCFKPNVVCCTGI 60

Query: 90  DKHRVHQFAASVRSRKPPDPFKGKGIMCADEVI 122
           DK RVHQFAA+VRS KPP+ +KGKGIM  DEVI
Sbjct: 61  DKQRVHQFAAAVRSCKPPEVYKGKGIMYIDEVI 93

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	132
TAIR|locus:2062200	102	AT2G18400 [Arabidopsis thalian	0.704	0.911	0.784	1.7e-36
TAIR|locus:2207190	223	emb2394 "embryo defective 2394	0.659	0.390	0.404	4.2e-15
TIGR_CMR|CHY_2294	182	CHY_2294 "ribosomal protein L6	0.659	0.478	0.438	1.8e-14
TIGR_CMR|SPO_0500	177	SPO_0500 "ribosomal protein L6	0.659	0.491	0.438	3e-14
TIGR_CMR|GSU_2842	179	GSU_2842 "ribosomal protein L6	0.659	0.486	0.460	1.3e-13
TIGR_CMR|BA_0125	179	BA_0125 "ribosomal protein L6"	0.659	0.486	0.415	1.6e-13
TIGR_CMR|CBU_0253	178	CBU_0253 "ribosomal protein L6	0.643	0.477	0.425	7.1e-13
TIGR_CMR|CJE_1860	178	CJE_1860 "ribosomal protein L6	0.651	0.483	0.415	7.1e-13
UNIPROTKB|P0AG55	177	rplF "50S ribosomal subunit pr	0.659	0.491	0.382	9.1e-13
UNIPROTKB|Q9KNZ9	177	rplF "50S ribosomal protein L6	0.643	0.480	0.425	2.4e-12

TAIR|locus:2062200 AT2G18400 [Arabidopsis thaliana (taxid:3702)]

 Score = 393 (143.4 bits), Expect = 1.7e-36, P = 1.7e-36
 Identities = 73/93 (78%), Positives = 80/93 (86%)

Query:    30 MEAKFLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCCCGL 89
             MEAKF RFLKIVGVGYKARAE  GR LYLKLGY H+VEL VP AVR+FC KNNVVCC G+
Sbjct:     1 MEAKFFRFLKIVGVGYKARAEEAGRFLYLKLGYSHEVELAVPPAVRVFCFKNNVVCCTGI 60

Query:    90 DKHRVHQFAASVRSRKPPDPFKGKGIMCADEVI 122
             DK RVHQFAA+VRS KPP+P+KGKGIM  DEV+
Sbjct:    61 DKQRVHQFAATVRSCKPPEPYKGKGIMYTDEVV 93

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA;ISS

GO:0015934 "large ribosomal subunit" evidence=ISS

GO:0019843 "rRNA binding" evidence=IEA

GO:0006354 "DNA-dependent transcription, elongation" evidence=RCA

TAIR|locus:2207190 emb2394 "embryo defective 2394" [Arabidopsis thaliana (taxid:3702)]

 Score = 191 (72.3 bits), Expect = 4.2e-15, P = 4.2e-15
 Identities = 36/89 (40%), Positives = 59/89 (66%)

Query:    34 FLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCCCGLDKHR 93
             F + L +VGVGY  RA  +G+ L L LG+ H V++ +P ++++   +N  +   G DK  
Sbjct:   126 FEKKLILVGVGY--RATVDGKELVLNLGFSHPVKMQIPDSLKVKVEENTRITVSGYDKSE 183

Query:    94 VHQFAASVRSRKPPDPFKGKGIMCADEVI 122
             + QFAA+VR  +PP+P+KGKG+  +DE++
Sbjct:   184 IGQFAATVRKWRPPEPYKGKGVKYSDEIV 212

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

GO:0015934 "large ribosomal subunit" evidence=ISS

GO:0019843 "rRNA binding" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006354 "DNA-dependent transcription, elongation" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

TIGR_CMR|CHY_2294 CHY_2294 "ribosomal protein L6" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 185 (70.2 bits), Expect = 1.8e-14, P = 1.8e-14
 Identities = 39/89 (43%), Positives = 55/89 (61%)

Query:    34 FLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCCCGLDKHR 93
             + + L++VGVGY  RA  +GR L L +GY H VE+  P  + I     N +   G+DK  
Sbjct:    83 YQKSLELVGVGY--RAAKQGRKLVLTVGYSHPVEMDPPEGIEIEVPAQNQIIVKGIDKEL 140

Query:    94 VHQFAASVRSRKPPDPFKGKGIMCADEVI 122
             V  FAA++R+ + P+P+KGKGI   DEVI
Sbjct:   141 VGNFAATIRAVREPEPYKGKGIKYTDEVI 169

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

TIGR_CMR|SPO_0500 SPO_0500 "ribosomal protein L6" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 183 (69.5 bits), Expect = 3.0e-14, P = 3.0e-14
 Identities = 39/89 (43%), Positives = 54/89 (60%)

Query:    34 FLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCCCGLDKHR 93
             F + L+I GVGY  RA A+G  L L LGY HDV+ TVP+ V +   K   +   G+D+ +
Sbjct:    83 FKKELEITGVGY--RANAQGNTLKLNLGYSHDVDFTVPAGVTVSTPKQTEIVVEGIDQQQ 140

Query:    94 VHQFAASVRSRKPPDPFKGKGIMCADEVI 122
             V + AA +R  + P+P+KGKGI    E I
Sbjct:   141 VGEVAAKIREWRSPEPYKGKGIRYKGEFI 169

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0042255 "ribosome assembly" evidence=ISS

TIGR_CMR|GSU_2842 GSU_2842 "ribosomal protein L6" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 41/89 (46%), Positives = 55/89 (61%)

Query:    34 FLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCCCGLDKHR 93
             F R L+I GVGY  RAEA+G +L L LGY H +   +P+ + +   K   +   G+DK  
Sbjct:    83 FERALEINGVGY--RAEAKGDVLNLSLGYSHPINYALPAGIIVEVDKMTKLVVKGIDKEL 140

Query:    94 VHQFAASVRSRKPPDPFKGKGIMCADEVI 122
             V Q AA +RS + P+P+KGKGI  ADE I
Sbjct:   141 VGQTAAKIRSFRGPEPYKGKGIKYADEKI 169

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

TIGR_CMR|BA_0125 BA_0125 "ribosomal protein L6" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 176 (67.0 bits), Expect = 1.6e-13, P = 1.6e-13
 Identities = 37/89 (41%), Positives = 56/89 (62%)

Query:    34 FLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCCCGLDKHR 93
             F R L++VGVGY  RA+ +G  L L +GY H VE+T  + + +       +   G+DK R
Sbjct:    84 FARGLELVGVGY--RAQKQGDKLVLSVGYSHPVEMTPEAGLEVEVPAPTKIVIKGIDKQR 141

Query:    94 VHQFAASVRSRKPPDPFKGKGIMCADEVI 122
             V +FAA++R+ + P+P+KGKGI    EV+
Sbjct:   142 VGEFAANIRAVRAPEPYKGKGIRYEGEVV 170

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

TIGR_CMR|CBU_0253 CBU_0253 "ribosomal protein L6" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 170 (64.9 bits), Expect = 7.1e-13, P = 7.1e-13
 Identities = 37/87 (42%), Positives = 52/87 (59%)

Query:    34 FLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCCCGLDKHR 93
             F R L +VGVGY  RA+AEG+ L L +G  H V + +P  + +       +   G DK R
Sbjct:    84 FQRKLVMVGVGY--RAKAEGKKLNLTVGLSHPVNIEMPEGITVETPSQTEIIVKGADKQR 141

Query:    94 VHQFAASVRSRKPPDPFKGKGIMCADE 120
             V Q AA++R  +PP+P+KGKGI   +E
Sbjct:   142 VSQVAANIREIRPPEPYKGKGIRYDNE 168

GO:0003735 "structural constituent of ribosome" evidence=ISS

TIGR_CMR|CJE_1860 CJE_1860 "ribosomal protein L6" [Campylobacter jejuni RM1221 (taxid:195099)]

 Score = 170 (64.9 bits), Expect = 7.1e-13, P = 7.1e-13
 Identities = 37/89 (41%), Positives = 53/89 (59%)

Query:    34 FLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCCCGLDKHR 93
             F + L+I GVGYKA  +  G++L L LG+ H +   +P  + I   KN +    G DK  
Sbjct:    83 FSKTLEINGVGYKAALK--GKVLELSLGFSHPINYDIPEGIEIVVDKNTIAVK-GSDKQV 139

Query:    94 VHQFAASVRSRKPPDPFKGKGIMCADEVI 122
             V Q AA +R  +PP+P+KGKG+  +DE I
Sbjct:   140 VGQVAAQIREFRPPEPYKGKGVKYSDERI 168

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

UNIPROTKB|P0AG55 rplF "50S ribosomal subunit protein L6" [Escherichia coli K-12 (taxid:83333)]

 Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
 Identities = 34/89 (38%), Positives = 54/89 (60%)

Query:    34 FLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCCCGLDKHR 93
             F + L++VGVGY  RA  +G ++ L LG+ H V+  +P+ +   C     +   G DK  
Sbjct:    83 FTKKLQLVGVGY--RAAVKGNVINLSLGFSHPVDHQLPAGITAECPTQTEIVLKGADKQV 140

Query:    94 VHQFAASVRSRKPPDPFKGKGIMCADEVI 122
             + Q AA +R+ + P+P+KGKG+  ADEV+
Sbjct:   141 IGQVAADLRAYRRPEPYKGKGVRYADEVV 169

GO:0006412 "translation" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0046677 "response to antibiotic" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0019843 "rRNA binding" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

UNIPROTKB|Q9KNZ9 rplF "50S ribosomal protein L6" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
 Identities = 37/87 (42%), Positives = 50/87 (57%)

Query:    34 FLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCCCGLDKHR 93
             F + L + GVGY  RA  +G  + L LG+ H VE  +P+ V+  C     +   G DK  
Sbjct:    83 FTKKLVLKGVGY--RAAMKGNAVGLTLGFSHPVEHELPAGVKAECPSQTEIVLTGCDKQV 140

Query:    94 VHQFAASVRSRKPPDPFKGKGIMCADE 120
             V Q AA +RS + P+P+KGKGI  ADE
Sbjct:   141 VGQVAADIRSYRAPEPYKGKGIRYADE 167

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	grail3.0019019801	SubName- Full=Putative uncharacterized protein; (103 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.16155.2.1	Predicted protein (206 aa)	•			•			•		0.957
	gw1.IV.3048.1	SubName- Full=Putative uncharacterized protein; (227 aa)	•			•			•		0.953
	gw1.II.2942.1	SubName- Full=Putative uncharacterized protein; (218 aa)	•			•	•		•		0.944
	rps8	RecName- Full=30S ribosomal protein S8, chloroplastic;; One of the primary rRNA binding protein [...] (134 aa)	•			•			•		0.931
	rpl22	50S ribosomal protein L22 ; This protein binds specifically to 23S rRNA (By similarity) (129 aa)	•			•	•		•		0.923
	eugene3.15590001	hypothetical protein (142 aa)	•		•	•	•		•		0.922
	fgenesh4_pm.C_LG_XIII000297	hypothetical protein (222 aa)	•			•	•		•		0.918
	gw1.8701.6.1	Predicted protein (100 aa)	•			•			•		0.907
	grail3.0553000101	SubName- Full=Putative uncharacterized protein; (104 aa)	•			•			•		0.896
	estExt_fgenesh4_pm.C_LG_IV0116	hypothetical protein (160 aa)	•			•	•		•		0.887

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	132
TIGR03654	175	TIGR03654, L6_bact, ribosomal protein L6, bacteria	4e-33
PRK05498	178	PRK05498, rplF, 50S ribosomal protein L6; Validate	6e-32
CHL00140	178	CHL00140, rpl6, ribosomal protein L6; Validated	2e-24
COG0097	178	COG0097, RplF, Ribosomal protein L6P/L9E [Translat	9e-24
pfam00347	76	pfam00347, Ribosomal_L6, Ribosomal protein L6	5e-15

>gnl|CDD|213843 TIGR03654, L6_bact, ribosomal protein L6, bacterial type

 Score =  113 bits (286), Expect = 4e-33
 Identities = 43/96 (44%), Positives = 61/96 (63%), Gaps = 2/96 (2%)

Query: 34  FLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCCCGLDKHR 93
           F + L+IVGVGY  RA+ +G+ L L LGY H VE  +P  + +   K   +   G+DK  
Sbjct: 82  FEKKLEIVGVGY--RAQLQGKKLNLSLGYSHPVEYEIPEGITVEVPKPTEIVVKGIDKQL 139

Query: 94  VHQFAASVRSRKPPDPFKGKGIMCADEVIKKKVGKK 129
           V Q AA +R+ + P+P+KGKGI  A EV+++K GKK
Sbjct: 140 VGQVAAEIRAFRKPEPYKGKGIRYAGEVVRRKEGKK 175

[Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 175

>gnl|CDD|235495 PRK05498, rplF, 50S ribosomal protein L6; Validated

 Score =  110 bits (279), Expect = 6e-32
 Identities = 46/98 (46%), Positives = 63/98 (64%), Gaps = 2/98 (2%)

Query: 34  FLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCCCGLDKHR 93
           F + L+IVGVGY  RA+ +G+ L L LGY H VE  +P  + +   K   +   G+DK  
Sbjct: 83  FEKKLEIVGVGY--RAQVKGKKLNLSLGYSHPVEYEIPEGITVEVPKPTEIVVKGIDKQL 140

Query: 94  VHQFAASVRSRKPPDPFKGKGIMCADEVIKKKVGKKKS 131
           V Q AA +RS +PP+P+KGKGI  A EV+++K GKKK 
Sbjct: 141 VGQVAAEIRSYRPPEPYKGKGIRYAGEVVRRKEGKKKK 178

Length = 178

>gnl|CDD|177062 CHL00140, rpl6, ribosomal protein L6; Validated

 Score = 91.5 bits (228), Expect = 2e-24
 Identities = 42/96 (43%), Positives = 61/96 (63%), Gaps = 2/96 (2%)

Query: 33  KFLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCCCGLDKH 92
            F + L++ GVGY  RA+ +G+ L L LGY H V++ +P  + +    N  +   G+DK 
Sbjct: 82  GFEKKLELQGVGY--RAQVQGKDLILNLGYSHPVKIKIPPGISVEVENNTNITIKGIDKE 139

Query: 93  RVHQFAASVRSRKPPDPFKGKGIMCADEVIKKKVGK 128
            V QFAA +RS +PP+P+KGKGI    EVI++K GK
Sbjct: 140 LVGQFAAKIRSVRPPEPYKGKGIRYKGEVIRRKAGK 175

Length = 178

>gnl|CDD|223175 COG0097, RplF, Ribosomal protein L6P/L9E [Translation, ribosomal structure and biogenesis]

 Score = 89.9 bits (224), Expect = 9e-24
 Identities = 39/96 (40%), Positives = 56/96 (58%), Gaps = 2/96 (2%)

Query: 34  FLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCCCGLDKHR 93
           F + L+IVGVGY  RA+  G  L L LGY H V + +P  + +       +   G+DK  
Sbjct: 83  FEKKLEIVGVGY--RAQVVGGNLELFLGYSHPVVIEIPEGITVEVPGPTEIVVEGIDKEL 140

Query: 94  VHQFAASVRSRKPPDPFKGKGIMCADEVIKKKVGKK 129
           V Q AA++R+ + P+P+KGKGI    E I++K GK 
Sbjct: 141 VGQVAANIRAARKPEPYKGKGIRYDGEYIRRKEGKT 176

Length = 178

>gnl|CDD|215872 pfam00347, Ribosomal_L6, Ribosomal protein L6

 Score = 64.9 bits (159), Expect = 5e-15
 Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 2/76 (2%)

Query: 41  VGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCCCGLDKHRVHQFAAS 100
           + VG   R   +G  L L LG   ++   +P  V +   K  V+   G+DK +V QFAA 
Sbjct: 1   IPVGV--RVSIDGVNLVLVLGPKGELTREIPPGVTVKVEKITVIIVSGIDKEKVGQFAAL 58

Query: 101 VRSRKPPDPFKGKGIM 116
           + + + P P  GKG+ 
Sbjct: 59  IGTYRAPIPNMGKGVS 74

Length = 76

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	132
CHL00140	178	rpl6 ribosomal protein L6; Validated	100.0
TIGR03654	175	L6_bact ribosomal protein L6, bacterial type.	100.0
PRK05498	178	rplF 50S ribosomal protein L6; Validated	100.0
COG0097	178	RplF Ribosomal protein L6P/L9E [Translation, ribos	100.0
KOG3254	211	consensus Mitochondrial/chloroplast ribosomal prot	100.0
PTZ00027	190	60S ribosomal protein L6; Provisional	99.97
PRK05518	180	rpl6p 50S ribosomal protein L6P; Reviewed	99.96
TIGR03653	170	arch_L6P archaeal ribosomal protein L6P. Members o	99.96
PTZ00179	189	60S ribosomal protein L9; Provisional	99.96
PF00347	77	Ribosomal_L6: Ribosomal protein L6; InterPro: IPR0	98.64
KOG3255	179	consensus 60S ribosomal protein L9 [Translation, r	96.74

>CHL00140 rpl6 ribosomal protein L6; Validated

Probab=100.00  E-value=4.9e-46  Score=287.98  Aligned_cols=112  Identities=38%  Similarity=0.649  Sum_probs=107.4

Q ss_pred             chhHHHHhhhhhhhhhccccceEEEEEEEEEEeeEEEeccCCEEEEEeccceeeeeeCCCCcEEEecCCeEEEEEecCHH
Q 046142           13 DALNHMSNLCDKFTLTWMEAKFLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCCCGLDKH   92 (132)
Q Consensus        13 ~~~~h~~n~~~~~~i~Gv~~gf~~~L~lvGvGYra~i~~~g~~L~l~LGySH~i~~~IP~~V~v~v~~~t~I~l~GiDKq   92 (132)
                      +--+|++||+     .||++||+++|+++|+||||.+  +|+.|.|+||||||+.++||+||+|+|+++|+|+|+|+|||
T Consensus        67 t~~slI~Nmi-----~GVt~Gf~~~L~lvGvGyr~~~--~g~~l~l~LG~sh~i~~~IP~gv~v~~~~~t~I~i~G~dke  139 (178)
T CHL00140         67 LYRTLINNMV-----IGVSEGFEKKLELQGVGYRAQV--QGKDLILNLGYSHPVKIKIPPGISVEVENNTNITIKGIDKE  139 (178)
T ss_pred             HHHHHHHHHH-----hhcccCceEEEEEEEEEEEEEE--eCCcEEEEecCCeeEEEECCCCeEEEeCCCCEEEEEECCHH
Confidence            5568899988     9999999999999999999998  77889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhccCCCCCCCCCceeecceEEEecCCcccC
Q 046142           93 RVHQFAASVRSRKPPDPFKGKGIMCADEVIKKKVGKKKS  131 (132)
Q Consensus        93 ~VgqfAa~Ir~~r~pepYKGKGI~~~~E~I~~K~gKk~~  131 (132)
                      +|+||||+||++|+|||||||||+|+||+|++|+||+++
T Consensus       140 ~Vgq~AA~Ir~~r~pepYKGKGI~y~~e~i~~K~gK~~~  178 (178)
T CHL00140        140 LVGQFAAKIRSVRPPEPYKGKGIRYKGEVIRRKAGKAGK  178 (178)
T ss_pred             HHHHHHHHHhccCCCCCcCCccEeECCEEEEEecccCCC
Confidence            999999999999999999999999999999999999864

>TIGR03654 L6_bact ribosomal protein L6, bacterial type

Probab=100.00  E-value=7.3e-45  Score=280.65  Aligned_cols=110  Identities=39%  Similarity=0.656  Sum_probs=105.7

Q ss_pred             chhHHHHhhhhhhhhhccccceEEEEEEEEEEeeEEEeccCCEEEEEeccceeeeeeCCCCcEEEecCCeEEEEEecCHH
Q 046142           13 DALNHMSNLCDKFTLTWMEAKFLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCCCGLDKH   92 (132)
Q Consensus        13 ~~~~h~~n~~~~~~i~Gv~~gf~~~L~lvGvGYra~i~~~g~~L~l~LGySH~i~~~IP~~V~v~v~~~t~I~l~GiDKq   92 (132)
                      +-.+|++||+     .||++||++.|+++|+||||.+  +++.|.|+||||||+.++||++|+|+++++|+|+|+|+|||
T Consensus        66 t~~s~i~Nmi-----~GVt~Gf~~~L~lvGvgyrv~~--~g~~l~l~LG~sh~i~~~Ip~~v~v~~~~~t~I~i~G~dke  138 (175)
T TIGR03654        66 TTRALINNMV-----IGVSEGFEKKLEIVGVGYRAQL--QGKKLNLSLGYSHPVEYEIPEGITVEVPKPTEIVVKGIDKQ  138 (175)
T ss_pred             HHHHHHHHHh-----heeccCcEEEEEEEEEEEEEEE--eCCeEEEEecCceeEEEECCCCeEEEeCCCCEEEEEECCHH
Confidence            3467888888     9999999999999999999998  78899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhccCCCCCCCCCceeecceEEEecCCcc
Q 046142           93 RVHQFAASVRSRKPPDPFKGKGIMCADEVIKKKVGKK  129 (132)
Q Consensus        93 ~VgqfAa~Ir~~r~pepYKGKGI~~~~E~I~~K~gKk  129 (132)
                      .|+||||+||++|||||||||||+|.||+|++|+||+
T Consensus       139 ~Vgq~AA~Ir~~r~pepYKgkGi~~~~e~I~~K~gKk  175 (175)
T TIGR03654       139 LVGQVAAEIRAFRKPEPYKGKGIRYAGEVVRRKEGKK  175 (175)
T ss_pred             HHHHHHHHHhccCCCCCcCCCcEeECCEEEEEeCcCC
Confidence            9999999999999999999999999999999999996

>PRK05498 rplF 50S ribosomal protein L6; Validated

Probab=100.00  E-value=9e-45  Score=280.62  Aligned_cols=112  Identities=41%  Similarity=0.689  Sum_probs=107.2

Q ss_pred             chhHHHHhhhhhhhhhccccceEEEEEEEEEEeeEEEeccCCEEEEEeccceeeeeeCCCCcEEEecCCeEEEEEecCHH
Q 046142           13 DALNHMSNLCDKFTLTWMEAKFLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCCCGLDKH   92 (132)
Q Consensus        13 ~~~~h~~n~~~~~~i~Gv~~gf~~~L~lvGvGYra~i~~~g~~L~l~LGySH~i~~~IP~~V~v~v~~~t~I~l~GiDKq   92 (132)
                      +-.+|++||+     .||++||+++|+++|+||||.+  +++.|.|+||||||+.++||+||+|+++++|+|+|+|+|+|
T Consensus        67 t~~s~I~Nmi-----~GVt~Gf~~~L~lvGvgyrv~~--~g~~l~l~LG~sh~i~~~Ip~gv~v~~~~~t~I~i~G~dke  139 (178)
T PRK05498         67 TTRALINNMV-----VGVTEGFEKKLEIVGVGYRAQV--KGKKLNLSLGYSHPVEYEIPEGITVEVPKPTEIVVKGIDKQ  139 (178)
T ss_pred             HHHHHHHHHh-----hhcCCCeEEEEEEEeEEEEEEE--eCCeEEEEecCCEEEEEECCCCeEEEeCCCCEEEEEECCHH
Confidence            3468888888     9999999999999999999998  78899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhccCCCCCCCCCceeecceEEEecCCcccC
Q 046142           93 RVHQFAASVRSRKPPDPFKGKGIMCADEVIKKKVGKKKS  131 (132)
Q Consensus        93 ~VgqfAa~Ir~~r~pepYKGKGI~~~~E~I~~K~gKk~~  131 (132)
                      +|+||||+||++|+|||||||||+|.||+|++|+||+++
T Consensus       140 ~Vg~~AA~Ir~~r~pe~YkgkGi~~~~e~i~~K~gKk~~  178 (178)
T PRK05498        140 LVGQVAAEIRSYRPPEPYKGKGIRYAGEVVRRKEGKKKK  178 (178)
T ss_pred             HHHHHHHHHhccCCCCCccCCcEeECCEEEEEecccCCC
Confidence            999999999999999999999999999999999999874

>COG0097 RplF Ribosomal protein L6P/L9E [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=3.4e-44  Score=278.32  Aligned_cols=112  Identities=35%  Similarity=0.565  Sum_probs=107.6

Q ss_pred             chhHHHHhhhhhhhhhccccceEEEEEEEEEEeeEEEeccCCEEEEEeccceeeeeeCCCCcEEEecCCeEEEEEecCHH
Q 046142           13 DALNHMSNLCDKFTLTWMEAKFLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCCCGLDKH   92 (132)
Q Consensus        13 ~~~~h~~n~~~~~~i~Gv~~gf~~~L~lvGvGYra~i~~~g~~L~l~LGySH~i~~~IP~~V~v~v~~~t~I~l~GiDKq   92 (132)
                      +--+|++||+     +||++||+++|+|+|+||||++  +++.|.++||||||+.++||+||+|++++||+|+|+|+|||
T Consensus        67 t~rali~Nmv-----~GVteGf~~kL~ivgvgyra~v--~g~~l~l~LG~shp~~~~ip~gi~v~v~~~t~I~v~GidKe  139 (178)
T COG0097          67 TVRALINNMV-----KGVTEGFEKKLEIVGVGYRAQV--VGGNLELFLGYSHPVVIEIPEGITVEVPGPTEIVVEGIDKE  139 (178)
T ss_pred             HHHHHHHHHh-----eecccceEEEEEEEEecceeEE--eccEEEEeecccCCeEEECCCCeEEEecCCCEEEEEcCCHH
Confidence            5678999999     9999999999999999999998  77789999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhccCCCCCCCCCceeecceEEEecCCcccC
Q 046142           93 RVHQFAASVRSRKPPDPFKGKGIMCADEVIKKKVGKKKS  131 (132)
Q Consensus        93 ~VgqfAa~Ir~~r~pepYKGKGI~~~~E~I~~K~gKk~~  131 (132)
                      .||||||+||++|+|||||||||||+||+|++|+||+.+
T Consensus       140 ~VGQ~AA~Ir~~r~pepykgKgi~ydge~I~~K~gK~~k  178 (178)
T COG0097         140 LVGQVAANIRAARKPEPYKGKGIRYDGEYIRRKEGKTGK  178 (178)
T ss_pred             HHhHHHHHHHhccCCCCCCCcceEEcCEEEEEeccccCC
Confidence            999999999999999999999999999999999999753

>KOG3254 consensus Mitochondrial/chloroplast ribosomal protein L6 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=3.4e-41  Score=262.48  Aligned_cols=104  Identities=47%  Similarity=0.766  Sum_probs=100.7

Q ss_pred             hhhccccceEEEEEEEEEEeeEEEeccCCEEEEEeccceeeeeeCCCCcEEEecCCeEEEEEecCHHHHHHHHHHhhccC
Q 046142           26 TLTWMEAKFLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCCCGLDKHRVHQFAASVRSRK  105 (132)
Q Consensus        26 ~i~Gv~~gf~~~L~lvGvGYra~i~~~g~~L~l~LGySH~i~~~IP~~V~v~v~~~t~I~l~GiDKq~VgqfAa~Ir~~r  105 (132)
                      |+.||+.||.+.|+|||+||||++  +|+.|.|+|||||++.+.||++|.|+++.||.++++|+|||+|+||||.+|+||
T Consensus       108 ~v~GVt~g~~k~l~lVGvGYRa~l--egk~l~lklG~S~~v~l~iP~~v~Vk~p~ptsl~~~G~dKq~V~qFAAkvRsfk  185 (211)
T KOG3254|consen  108 NVKGVTMGFLKILKLVGVGYRASL--EGKFLHLKLGYSHDVLLSIPTDVQVKNPTPTSLVLRGIDKQKVTQFAAKVRSFK  185 (211)
T ss_pred             cchhhhhhhhheeeEEeeeeEEEe--cCceEEEEeccccceeecCCCceEEecCCCCEEEEecccHHHHHHHHHHHhccC
Confidence            459999999999999999999999  699999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCceeecceEEEecCCcccC
Q 046142          106 PPDPFKGKGIMCADEVIKKKVGKKKS  131 (132)
Q Consensus       106 ~pepYKGKGI~~~~E~I~~K~gKk~~  131 (132)
                      ||||||||||.|+||.+++|+||..|
T Consensus       186 pPEPYKGKGIyv~dE~vklK~kK~~k  211 (211)
T KOG3254|consen  186 PPEPYKGKGIYVDDEKVKLKAKKSIK  211 (211)
T ss_pred             CCCCcCCCceEeccceeeecccccCC
Confidence            99999999999999999999999764

>PTZ00027 60S ribosomal protein L6; Provisional

Probab=99.97  E-value=1.3e-29  Score=198.40  Aligned_cols=107  Identities=16%  Similarity=0.154  Sum_probs=95.3

Q ss_pred             hhHHHHhhhhhhhhhccccceEEEEEEEEEEeeEEEe--ccCCEEEE--EeccceeeeeeCCCCcEEEecCC--eEEEEE
Q 046142           14 ALNHMSNLCDKFTLTWMEAKFLRFLKIVGVGYKARAE--AEGRLLYL--KLGYVHDVELTVPSAVRIFCLKN--NVVCCC   87 (132)
Q Consensus        14 ~~~h~~n~~~~~~i~Gv~~gf~~~L~lvGvGYra~i~--~~g~~L~l--~LGySH~i~~~IP~~V~v~v~~~--t~I~l~   87 (132)
                      --+|++||+     .||++||+++|+++|+||||+++  .+|+.|.|  +||||||+.++||+||+|+++++  |+|+|+
T Consensus        72 ~rslI~NmI-----~GVt~Gf~~~LeivGvGyra~~~v~~~g~~L~l~N~LG~Sh~i~~~iP~gv~v~~~~~~~t~I~i~  146 (190)
T PTZ00027         72 VCSHIKNMM-----TGVTKKFQYKMRLVYAHFPINSNITDNGKTIEIRNFLGEKRVRTVKMLPGVVVEKSESVKDEIIVT  146 (190)
T ss_pred             HHHHHHHHh-----hhhcCCEEEEEEEEEeeeeEEEEEcCCCCEEEEEccCCCceeEEEECCCCeEEEeCCCCCCEEEEE
Confidence            347888888     99999999999999999999954  48899999  89999999999999999999986  899999


Q ss_pred             ecCHHHHHHHHHHhhccCCCCCCCCCceeecceEEEecC
Q 046142           88 GLDKHRVHQFAASVRSRKPPDPFKGKGIMCADEVIKKKV  126 (132)
Q Consensus        88 GiDKq~VgqfAa~Ir~~r~pepYKGKGI~~~~E~I~~K~  126 (132)
                      |+|||+||||||+||+..+-.. |..-+|.||-+|.-|.
T Consensus       147 G~DKq~Vgq~AA~I~~~~~~~~-~d~r~f~dgiy~~~k~  184 (190)
T PTZ00027        147 GADLELVSRSAALIHQSTLVRN-KDIRKFLDGIYVSEKG  184 (190)
T ss_pred             eCCHHHHHHHHHHHHHHhcccC-CCccEeecCEEEEEee
Confidence            9999999999999999866533 3336899999999886

>PRK05518 rpl6p 50S ribosomal protein L6P; Reviewed

Probab=99.96  E-value=2.6e-29  Score=195.37  Aligned_cols=106  Identities=21%  Similarity=0.194  Sum_probs=94.3

Q ss_pred             hhHHHHhhhhhhhhhccccceEEEEEEEEEEe--eEEEeccCCEEEE--EeccceeeeeeCCCCcEEEecCCeEEEEEec
Q 046142           14 ALNHMSNLCDKFTLTWMEAKFLRFLKIVGVGY--KARAEAEGRLLYL--KLGYVHDVELTVPSAVRIFCLKNNVVCCCGL   89 (132)
Q Consensus        14 ~~~h~~n~~~~~~i~Gv~~gf~~~L~lvGvGY--ra~i~~~g~~L~l--~LGySH~i~~~IP~~V~v~v~~~t~I~l~Gi   89 (132)
                      --+|++||+     .||++||+++|+++|+||  ||++  +|+.|.|  +||||||+.++||+||++++++ |+|+|+|+
T Consensus        70 ~rslI~NmI-----~GVt~Gf~~~LelvGvGypira~~--~g~~l~l~n~LG~Sh~v~~~iP~gV~v~~~~-t~I~i~Gi  141 (180)
T PRK05518         70 FASHIKNMI-----KGVTEGFEYKLKIVYSHFPMQVKV--QGNEVVIENFLGEKSPRRAKILGGVKVKVKG-EDVIVEGI  141 (180)
T ss_pred             HHHHHHhhh-----eecccceEEEEEEEecCccEEEEE--cCCEEEEEeccccceeEEEeCCCCeEEEecC-CEEEEEeC
Confidence            346788888     999999999999999999  6655  8889999  9999999999999999999999 99999999


Q ss_pred             CHHHHHHHHHHhhccCCCCCCCCCceeecceEEEecCCc
Q 046142           90 DKHRVHQFAASVRSRKPPDPFKGKGIMCADEVIKKKVGK  128 (132)
Q Consensus        90 DKq~VgqfAa~Ir~~r~pepYKGKGI~~~~E~I~~K~gK  128 (132)
                      |||+||||||+||+..+... |..-.|.||-++..|.-|
T Consensus       142 DKq~Vgq~AA~Ir~~~~~~~-kd~r~f~dgiyv~~k~~~  179 (180)
T PRK05518        142 DKEDVGQTAANIEQATKIKG-FDRRVFQDGIYIVEKEVK  179 (180)
T ss_pred             CHHHHHHHHHHHHHhhcccC-CCCCEeecCEEEEEeccC
Confidence            99999999999999987633 444688899999888643

>TIGR03653 arch_L6P archaeal ribosomal protein L6P

Probab=99.96  E-value=8.8e-29  Score=190.80  Aligned_cols=101  Identities=23%  Similarity=0.300  Sum_probs=87.4

Q ss_pred             hhHHHHhhhhhhhhhccccceEEEEEEEEEEe--eEEEeccCCEEEE--EeccceeeeeeCCCCcEEEecCCeEEEEEec
Q 046142           14 ALNHMSNLCDKFTLTWMEAKFLRFLKIVGVGY--KARAEAEGRLLYL--KLGYVHDVELTVPSAVRIFCLKNNVVCCCGL   89 (132)
Q Consensus        14 ~~~h~~n~~~~~~i~Gv~~gf~~~L~lvGvGY--ra~i~~~g~~L~l--~LGySH~i~~~IP~~V~v~v~~~t~I~l~Gi   89 (132)
                      --+|++||+     .||++||++.|+++|+||  ||++  +|+.|.|  +||||||+.++||+||+|+++++ +|+|+|+
T Consensus        64 ~rsli~NmI-----~GVt~Gf~~~LeivGvGy~~ra~~--~g~~L~l~n~LG~Sh~i~~~iP~gI~v~~~~~-~I~i~G~  135 (170)
T TIGR03653        64 YRSHIKNMI-----KGVTEGFEYKMKVVYSHFPMQVKV--EGNKVVIENFLGEKAPRRAKIPGGVKVKVKGE-EVIVTGI  135 (170)
T ss_pred             HHHHHHhhe-----eecccCeEEEEEEEeccccEEEEE--cCCeEEEeeccccceeEEEECCCCeEEEecCC-EEEEEeC
Confidence            346777877     999999999999999999  6665  8888999  89999999999999999999995 9999999


Q ss_pred             CHHHHHHHHHHhhccCCCCCCCCCc--eeecceEEEec
Q 046142           90 DKHRVHQFAASVRSRKPPDPFKGKG--IMCADEVIKKK  125 (132)
Q Consensus        90 DKq~VgqfAa~Ir~~r~pepYKGKG--I~~~~E~I~~K  125 (132)
                      |||+||||||.||+.++.   |.|.  .|.||-++..|
T Consensus       136 DKq~Vgq~AA~Ir~~~~~---~~~d~r~f~dgiy~~~~  170 (170)
T TIGR03653       136 DKEDVGQTAANIEQATRI---KGRDPRVFQDGIYIVEK  170 (170)
T ss_pred             CHHHHHHHHHHHHHhhcc---cCCCccEeecCEEEEeC
Confidence            999999999999999776   3333  56677776543

Members of this protein family are the archaeal ribosomal protein L6P. The top-scoring proteins not selected by this model are eukaryotic cytosolic ribosomal protein L9. Bacterial ribosomal protein L6 scores lower and is described by a distinct model.

>PTZ00179 60S ribosomal protein L9; Provisional

Probab=99.96  E-value=1.9e-28  Score=191.71  Aligned_cols=105  Identities=18%  Similarity=0.167  Sum_probs=93.3

Q ss_pred             hhHHHHhhhhhhhhhccccceEEEEEEEEEEe--eEEEeccCCEEEE--EeccceeeeeeCCCCcEEEecCC----eEEE
Q 046142           14 ALNHMSNLCDKFTLTWMEAKFLRFLKIVGVGY--KARAEAEGRLLYL--KLGYVHDVELTVPSAVRIFCLKN----NVVC   85 (132)
Q Consensus        14 ~~~h~~n~~~~~~i~Gv~~gf~~~L~lvGvGY--ra~i~~~g~~L~l--~LGySH~i~~~IP~~V~v~v~~~----t~I~   85 (132)
                      --+|++||+     .||++||+++|+++|+||  ||++  +|+.|.|  +||||||+.++||+||+|++++|    ++|+
T Consensus        71 ~rslI~NMI-----~GVt~GF~k~L~ivgvgyp~ra~v--~g~~l~l~N~LG~sh~~~~~ip~gv~v~~~~~~~~k~~i~  143 (189)
T PTZ00179         71 ALSHVRNMI-----TGVTKGFRFKVRFAYAHFPISVSV--ENQLVEIRNFLGEKRVRRQVVADTVKVYRTDPSKVKDELV  143 (189)
T ss_pred             HHHHHHHHh-----hhhcCCEEEEEEEEEeCcceEEEE--cCCEEEEEecCCCCccEEEECCCCEEEEecCCcccCCEEE
Confidence            457888888     999999999999999999  7776  8999999  89999999999999999999998    8999


Q ss_pred             EEecCHHHHHHHHHHhhccCCCCCCCCCceeecceEEEecC
Q 046142           86 CCGLDKHRVHQFAASVRSRKPPDPFKGKGIMCADEVIKKKV  126 (132)
Q Consensus        86 l~GiDKq~VgqfAa~Ir~~r~pepYKGKGI~~~~E~I~~K~  126 (132)
                      |+|+|||.||||||+|++....-- |..-+|.||-|+..|.
T Consensus       144 i~G~DKq~Vgq~AA~i~~~~~~~~-~d~r~f~dgiy~~~k~  183 (189)
T PTZ00179        144 LEGNDLEQVSREAAVMHQLCLVKK-KDIRKFLDGIYVQTKT  183 (189)
T ss_pred             EEeCCHHHHHHHHHHHHHhhcccC-CCccEeecCEEEEEee
Confidence            999999999999999999866521 2225788999999886

>PF00347 Ribosomal_L6: Ribosomal protein L6; InterPro: IPR020040 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=98.64  E-value=2.1e-09  Score=71.45  Aligned_cols=71  Identities=21%  Similarity=0.211  Sum_probs=61.7

Q ss_pred             EEEeeEEEeccCCEEEEEeccceeeeeeCCCCcEEEec----CCeEEEEEecCHHHHHHHHHHhhccCCCCCCCCCceee
Q 046142           42 GVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCL----KNNVVCCCGLDKHRVHQFAASVRSRKPPDPFKGKGIMC  117 (132)
Q Consensus        42 GvGYra~i~~~g~~L~l~LGySH~i~~~IP~~V~v~v~----~~t~I~l~GiDKq~VgqfAa~Ir~~r~pepYKGKGI~~  117 (132)
                      +.|+++.+  ++ .+....|++|...+++|++|++++.    +.+...+++.|++..  |||.++.+|.+.+|+++||.+
T Consensus         2 P~gV~v~~--~~-~~i~v~G~~g~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~k~~~--~~a~~gt~rsli~n~i~GV~~   76 (77)
T PF00347_consen    2 PEGVKVTI--KG-NIITVKGPKGELSRPIPPGVKVEIKVEDNKITVSVLSGNKKQKA--FAAMIGTYRSLINNMIKGVTE   76 (77)
T ss_dssp             STTCEEEE--ET-TEEEEESSSSEEEEEETTTEEEEEEEETTSEEEEEEEESHHHHH--HHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCcEEEEE--eC-cEEEEECCCEeEEEECCCCeeEEEEcCCCceEEEECcccHhHhh--hHHhhccccccccCceeEECC
Confidence            45788887  44 6888999999999999999999976    556778899999999  999999999999999999753

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. L6 is a protein from the large (50S) subunit. In Escherichia coli, it is located in the aminoacyl-tRNA binding site of the peptidyltransferase centre, and is known to bind directly to 23S rRNA. It belongs to a family of ribosomal proteins, including L6 from bacteria, cyanelles (structures that perform similar functions to chloroplasts, but have structural and biochemical characteristics of Cyanobacteria) and mitochondria; and L9 from mammals, Drosophila, plants and yeast. L6 contains two domains with almost identical folds, suggesting that is was derived by the duplication of an ancient RNA-binding protein gene. Analysis reveals several sites on the protein surface where interactions with other ribosome components may occur, the N terminus being involved in protein-protein interactions and the C terminus containing possible RNA-binding sites []. This entry represents the alpha-beta domain found duplicated in ribosomal L6 proteins. This domain consists of two beta-sheets and one alpha-helix packed around single core [].; GO: 0003735 structural constituent of ribosome, 0019843 rRNA binding, 0006412 translation, 0005840 ribosome; PDB: 2HGJ_H 2HGQ_H 2HGU_H 1S1I_H 3O5H_I 3O58_I 3J16_F 3IZS_F 2V47_H 2WDJ_H ....

>KOG3255 consensus 60S ribosomal protein L9 [Translation, ribosomal structure and biogenesis]

Probab=96.74  E-value=0.00023  Score=55.88  Aligned_cols=87  Identities=17%  Similarity=0.116  Sum_probs=73.6

Q ss_pred             ccccchhHHHHhhhhhhhhhccccceEEEEEEEEEEeeEEEeccCC---EEEE-EeccceeeeeeCCCCcEEEec--CCe
Q 046142            9 ICNEDALNHMSNLCDKFTLTWMEAKFLRFLKIVGVGYKARAEAEGR---LLYL-KLGYVHDVELTVPSAVRIFCL--KNN   82 (132)
Q Consensus         9 ~~~~~~~~h~~n~~~~~~i~Gv~~gf~~~L~lvGvGYra~i~~~g~---~L~l-~LGySH~i~~~IP~~V~v~v~--~~t   82 (132)
                      -|=.+..+|+.||+     +|++.||.+++..+.-+|.+..+.+.+   ...+ +||.+.+..++..+|+.....  -+.
T Consensus        68 a~l~t~~s~ien~i-----~gvt~~~i~k~~av~a~f~in~~~~~~~~s~~i~n~l~~k~~~~~~~~~Gv~~~~~~~~~~  142 (179)
T KOG3255|consen   68 ACLRTVVSHIENCI-----KGVTIGFIYKMRAVYAHFPINTVIQENGKSEEIRNFLGEKLVRRVEMRPGVTIVRSSKVKD  142 (179)
T ss_pred             HHHHHHHHHHHHHH-----hcchHHHHHHhhhHHhhccccceecCCCcchhhhhhhhhhccceEecCCCeEEeeehhcch
Confidence            45568889999999     999999999999999999988765554   3333 999999999999999976553  456


Q ss_pred             EEEEEecCHHHHHHHHHH
Q 046142           83 VVCCCGLDKHRVHQFAAS  100 (132)
Q Consensus        83 ~I~l~GiDKq~VgqfAa~  100 (132)
                      .+.+.|.|-+.|.|-||.
T Consensus       143 ~i~~~~~~~~~vs~~~a~  160 (179)
T KOG3255|consen  143 EIVLEGNDLELVSQSAAL  160 (179)
T ss_pred             hheecccchhhhhhHhHh
Confidence            899999999999998777

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	132
3bbo_I	223	Homology Model For The Spinach Chloroplast 50s Subu		2e-17
1rl6_A	177	Ribosomal Protein L6 Length = 177		5e-14
1eg0_J	171	Fitting Of Components With Known Structure Into An		6e-14
487d_J	164	Seven Ribosomal Proteins Fitted To A Cryo-Electron		6e-14
1vs6_G	177	Crystal Structure Of The Bacterial Ribosome From Es		9e-14
1p85_E	176	Real Space Refined Coordinates Of The 50s Subunit F		9e-14
2gya_E	167	Structure Of The 50s Subunit Of A Pre-Translocation		9e-14
1pnu_E	177	Crystal Structure Of A Streptomycin Dependent Ribos		7e-09
1nwx_E	185	Complex Of The Large Ribosomal Subunit From Deinoco		8e-09
1nkw_E	212	Crystal Structure Of The Large Ribosomal Subunit Fr		9e-09
3fin_H	160	T. Thermophilus 70s Ribosome In Complex With Mrna,		9e-08
3pyo_G	159	Crystal Structure Of A Complex Containing Domain 3		1e-07
2j01_H	180	Structure Of The Thermus Thermophilus 70s Ribosome		1e-07
3tve_H	170	Crystal Structure Analysis Of Ribosomal Decoding. T		1e-07

>pdb|3BBO|I Chain I, Homology Model For The Spinach Chloroplast 50s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome Length = 223

Iteration: 1
 Score = 84.0 bits (206), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 40/110 (36%), Positives = 65/110 (59%), Gaps = 5/110 (4%)
Query: 16  NHMSNLCDKFT---LTWMEAKFLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPS 72
           N M  L    T   +  +   F + L +VGVGY  RA  +G+ L L LG+ H V++ +P 
Sbjct: 105 NQMHGLFRTLTDNMVVGVSKGFEKKLILVGVGY--RATVDGKELVLNLGFSHPVKMQIPD 162
Query: 73  AVRIFCLKNNVVCCCGLDKHRVHQFAASVRSRKPPDPFKGKGIMCADEVI 122
           ++++   +N  +   G DK  + QFAA+VR  +PP+P+KGKG+  +DE++
Sbjct: 163 SLKVKVEENTRITVSGYDKSEIGQFAATVRKWRPPEPYKGKGVKYSDEIV 212

>pdb|1RL6|A Chain A, Ribosomal Protein L6 Length = 177

Iteration: 1
 Score = 72.8 bits (177), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 53/89 (59%), Gaps = 2/89 (2%)
Query: 34  FLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCCCGLDKHR 93
           + + L++VGVGY  RA  +G+ L L +GY H VE+     + I       +   G DK R
Sbjct: 82  YEKALELVGVGY--RASKQGKKLVLSVGYSHPVEIEPEEGLEIEVPSQTKIIVKGADKQR 139
Query: 94  VHQFAASVRSRKPPDPFKGKGIMCADEVI 122
           V + AA++R+ +PP+P+KGKGI    E++
Sbjct: 140 VGELAANIRAVRPPEPYKGKGIRYEGELV 168

>pdb|487D|J Chain J, Seven Ribosomal Proteins Fitted To A Cryo-Electron Microscopic Map Of The Large 50s Subunit At 7.5 Angstroms Resolution Length = 164

Iteration: 1
 Score = 72.4 bits (176), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 53/89 (59%), Gaps = 2/89 (2%)
Query: 34  FLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCCCGLDKHR 93
           + + L++VGVGY  RA  +G+ L L +GY H VE+     + I       +   G DK R
Sbjct: 76  YEKALELVGVGY--RASKQGKKLVLSVGYSHPVEIEPEEGLEIEVPSQTKIIVKGADKQR 133
Query: 94  VHQFAASVRSRKPPDPFKGKGIMCADEVI 122
           V + AA++R+ +PP+P+KGKGI    E++
Sbjct: 134 VGELAANIRAVRPPEPYKGKGIRYEGELV 162

>pdb|1VS6|G Chain G, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With The Antibiotic Kasugamyin At 3.5a Resolution. This File Contains The 50s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. Length = 177

Iteration: 1
 Score = 72.0 bits (175), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 54/89 (60%), Gaps = 2/89 (2%)
Query: 34  FLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCCCGLDKHR 93
           F + L++VGVGY  RA  +G ++ L LG+ H V+  +P+ +   C     +   G DK  
Sbjct: 83  FTKKLQLVGVGY--RAAVKGNVINLSLGFSHPVDHQLPAGITAECPTQTEIVLKGADKQV 140
Query: 94  VHQFAASVRSRKPPDPFKGKGIMCADEVI 122
           + Q AA +R+ + P+P+KGKG+  ADEV+
Sbjct: 141 IGQVAADLRAYRRPEPYKGKGVRYADEVV 169

>pdb|1P85|E Chain E, Real Space Refined Coordinates Of The 50s Subunit Fitted Into The Low Resolution Cryo-Em Map Of The Ef-G.Gtp State Of E. Coli 70s Ribosome Length = 176

Iteration: 1
 Score = 72.0 bits (175), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 54/89 (60%), Gaps = 2/89 (2%)
Query: 34  FLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCCCGLDKHR 93
           F + L++VGVGY  RA  +G ++ L LG+ H V+  +P+ +   C     +   G DK  
Sbjct: 82  FTKKLQLVGVGY--RAAVKGNVINLSLGFSHPVDHQLPAGITAECPTQTEIVLKGADKQV 139
Query: 94  VHQFAASVRSRKPPDPFKGKGIMCADEVI 122
           + Q AA +R+ + P+P+KGKG+  ADEV+
Sbjct: 140 IGQVAADLRAYRRPEPYKGKGVRYADEVV 168

>pdb|2GYA|E Chain E, Structure Of The 50s Subunit Of A Pre-Translocational E. Coli Ribosome Obtained By Fitting Atomic Models For Rna And Protein Components Into Cryo-Em Map Emd-1056 Length = 167

Iteration: 1
 Score = 72.0 bits (175), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 54/89 (60%), Gaps = 2/89 (2%)
Query: 34  FLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCCCGLDKHR 93
           F + L++VGVGY  RA  +G ++ L LG+ H V+  +P+ +   C     +   G DK  
Sbjct: 78  FTKKLQLVGVGY--RAAVKGNVINLSLGFSHPVDHQLPAGITAECPTQTEIVLKGADKQV 135
Query: 94  VHQFAASVRSRKPPDPFKGKGIMCADEVI 122
           + Q AA +R+ + P+P+KGKG+  ADEV+
Sbjct: 136 IGQVAADLRAYRRPEPYKGKGVRYADEVV 164

>pdb|1PNU|E Chain E, Crystal Structure Of A Streptomycin Dependent Ribosome From Escherichia Coli, 50s Subunit Of 70s Ribosome. This File, 1pnu, Contains Only Molecules Of The 50s Ribosomal Subunit. The 30s Subunit, Mrna, P-Site Trna, And A-Site Trna Are In The Pdb File 1pns. Length = 177

Iteration: 1
 Score = 55.8 bits (133), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 53/107 (49%), Gaps = 11/107 (10%)
Query: 16  NHMSNLCDKFTLTWMEAKFLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVR 75
           N +  + D +T+          L++ GVG+  RA+  G+ L + +GY H V +  P+ V 
Sbjct: 70  NAVKGVSDGYTIN---------LELRGVGF--RAKLTGKALEMNIGYSHPVIIEPPAGVT 118
Query: 76  IFCLKNNVVCCCGLDKHRVHQFAASVRSRKPPDPFKGKGIMCADEVI 122
               +   +   G+DK  V Q AA+VR  + PD + GKG+    E I
Sbjct: 119 FAVPEPTRIDVSGIDKQLVGQVAANVRKVRKPDAYHGKGVRFVGEQI 165

>pdb|1NWX|E Chain E, Complex Of The Large Ribosomal Subunit From Deinococcus Radiodurans With Abt-773 Length = 185

Iteration: 1
 Score = 55.5 bits (132), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 53/107 (49%), Gaps = 11/107 (10%)
Query: 16  NHMSNLCDKFTLTWMEAKFLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVR 75
           N +  + D +T+          L++ GVG+  RA+  G+ L + +GY H V +  P+ V 
Sbjct: 74  NAVKGVSDGYTIN---------LELRGVGF--RAKLTGKALEMNIGYSHPVIIEPPAGVT 122
Query: 76  IFCLKNNVVCCCGLDKHRVHQFAASVRSRKPPDPFKGKGIMCADEVI 122
               +   +   G+DK  V Q AA+VR  + PD + GKG+    E I
Sbjct: 123 FAVPEPTRIDVSGIDKQLVGQVAANVRKVRKPDAYHGKGVRFVGEQI 169

>pdb|1NKW|E Chain E, Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans Length = 212

Iteration: 1
 Score = 55.5 bits (132), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 53/107 (49%), Gaps = 11/107 (10%)
Query: 16  NHMSNLCDKFTLTWMEAKFLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVR 75
           N +  + D +T+          L++ GVG+  RA+  G+ L + +GY H V +  P+ V 
Sbjct: 101 NAVKGVSDGYTIN---------LELRGVGF--RAKLTGKALEMNIGYSHPVIIEPPAGVT 149
Query: 76  IFCLKNNVVCCCGLDKHRVHQFAASVRSRKPPDPFKGKGIMCADEVI 122
               +   +   G+DK  V Q AA+VR  + PD + GKG+    E I
Sbjct: 150 FAVPEPTRIDVSGIDKQLVGQVAANVRKVRKPDAYHGKGVRFVGEQI 196

>pdb|3FIN|H Chain H, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A 6.4 A Cryo-Em Map. This File Contains The 50s Subunit Length = 160

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Query: 34  FLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCCCGLDKHR 93
           + + L I G+GY+AR    GR L L +G+ H V +  P  +     +   V   G+DK +
Sbjct: 72  YSKELLIKGIGYRARLV--GRALELTVGFSHPVVVEPPEGITFEVPEPTRVRVSGIDKQK 129
Query: 94  VHQFAASVRSRKPPDPFKGKGIMCADEVI 122
           V Q AA++R+ + P  +  KGI  A E +
Sbjct: 130 VGQVAANIRAIRKPSAYHEKGIYYAGEPV 158

>pdb|3PYO|G Chain G, Crystal Structure Of A Complex Containing Domain 3 From The Psiv Igr Ires Rna Bound To The 70s Ribosome. This File Contains The 50s Subunit Of The First 70s Ribosome. Length = 159

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Query: 34  FLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCCCGLDKHR 93
           + + L I G+GY+AR    GR L L +G+ H V +  P  +     +   V   G+DK +
Sbjct: 72  YSKELLIKGIGYRARLV--GRALELTVGFSHPVVVEPPEGITFEVPEPTRVRVSGIDKQK 129
Query: 94  VHQFAASVRSRKPPDPFKGKGIMCADEVI 122
           V Q AA++R+ + P  +  KGI  A E +
Sbjct: 130 VGQVAANIRAIRKPSAYHEKGIYYAGEPV 158

>pdb|2J01|H Chain H, Structure Of The Thermus Thermophilus 70s Ribosome Complexed With Mrna, Trna And Paromomycin (Part 2 Of 4). This File Contains The 50s Subunit From Molecule I. Length = 180

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Query: 34  FLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCCCGLDKHR 93
           + + L I G+GY+AR    GR L L +G+ H V +  P  +     +   V   G+DK +
Sbjct: 83  YSKELLIKGIGYRARLV--GRALELTVGFSHPVVVEPPEGITFEVPEPTRVRVSGIDKQK 140
Query: 94  VHQFAASVRSRKPPDPFKGKGIMCADEVI 122
           V Q AA++R+ + P  +  KGI  A E +
Sbjct: 141 VGQVAANIRAIRKPSAYHEKGIYYAGEPV 169

>pdb|3TVE|H Chain H, Crystal Structure Analysis Of Ribosomal Decoding. This Entry Contains The 50s Ribosomal Subunit Of The First 70s Molecule In The Asymmetric Unit For The Cognate Trna-Leu Complex Length = 170

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Query: 34  FLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCCCGLDKHR 93
           + + L I G+GY+AR    GR L L +G+ H V +  P  +     +   V   G+DK +
Sbjct: 82  YSKELLIKGIGYRARLV--GRALELTVGFSHPVVVEPPEGITFEVPEPTRVRVSGIDKQK 139
Query: 94  VHQFAASVRSRKPPDPFKGKGIMCADEVI 122
           V Q AA++R+ + P  +  KGI  A E +
Sbjct: 140 VGQVAANIRAIRKPSAYHEKGIYYAGEPV 168

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	132
3r8s_G	176	50S ribosomal protein L6; protein biosynthesis, RN	2e-31
2zjr_E	185	50S ribosomal protein L6; ribosome, large ribosoma	1e-30
3v2d_H	180	50S ribosomal protein L6; ribosome associated inhi	1e-30
1nkw_E	212	50S ribosomal protein L6; ribosome, large subunit,	1e-30
3bbo_I	223	Ribosomal protein L6; large ribosomal subunit, spi	3e-30
1rl6_A	177	Protein (ribosomal protein L6); RNA-binding protei	7e-30
1vq8_E	178	50S ribosomal protein L6P; ribosome 50S, protein-p	2e-15
2zkr_e	192	60S ribosomal protein L9; protein-RNA complex, 60S	1e-09
3iz5_F	190	60S ribosomal protein L9 (L6P); eukaryotic ribosom	4e-07
4a17_E	188	RPL9, 60S ribosomal protein L9; eukaryotic ribosom	4e-06
3u5e_H	191	L8, RP24, YL11, 60S ribosomal protein L9-A; transl	2e-05

>3r8s_G 50S ribosomal protein L6; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_E 1p86_E 2awb_G 2aw4_G 2i2v_G 2j28_G 2i2t_G* 2qao_G* 2qba_G* 2qbc_G* 2qbe_G 2qbg_G 2qbi_G* 2qbk_G* 2qov_G 2qox_G 2qoz_G* 2qp1_G* 2rdo_G 2vhm_G ... Length = 176

 Score =  109 bits (274), Expect = 2e-31
 Identities = 38/97 (39%), Positives = 59/97 (60%), Gaps = 2/97 (2%)

Query: 34  FLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCCCGLDKHR 93
           F + L++VGVGY  RA  +G ++ L LG+ H V+  +P+ +   C     +   G DK  
Sbjct: 82  FTKKLQLVGVGY--RAAVKGNVINLSLGFSHPVDHQLPAGITAECPTQTEIVLKGADKQV 139

Query: 94  VHQFAASVRSRKPPDPFKGKGIMCADEVIKKKVGKKK 130
           + Q AA +R+ + P+P+KGKG+  ADEV++ K  KKK
Sbjct: 140 IGQVAADLRAYRRPEPYKGKGVRYADEVVRTKEAKKK 176

>2zjr_E 50S ribosomal protein L6; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.141.1.1 d.141.1.1 PDB: 1nwx_E* 1xbp_E* 2zjp_E* 2zjq_E 1nwy_E 3cf5_E* 3dll_E* 3pio_E* 3pip_E* 1pnu_E 1pny_E 1vor_H 1vou_H 1vow_H 1voy_H 1vp0_H Length = 185

 Score =  107 bits (270), Expect = 1e-30
 Identities = 33/101 (32%), Positives = 50/101 (49%), Gaps = 4/101 (3%)

Query: 34  FLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCCCGLDKHR 93
           +   L++ GVG+  RA+  G+ L + +GY H V +  P+ V     +   +   G+DK  
Sbjct: 83  YTINLELRGVGF--RAKLTGKALEMNIGYSHPVIIEPPAGVTFAVPEPTRIDVSGIDKQL 140

Query: 94  VHQFAASVRSRKPPDPFKGKGIMCADEVIKKKVGK--KKSK 132
           V Q AA+VR  + PD + GKG+    E I  K GK      
Sbjct: 141 VGQVAANVRKVRKPDAYHGKGVRFVGEQIALKAGKAGATGG 181

>3v2d_H 50S ribosomal protein L6; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_F 2hgj_H 2hgq_H 2hgu_H 1vsa_F 2j03_H 2jl6_H 2jl8_H 2v47_H 2v49_H 2wdi_H 2wdj_H 2wdl_H 2wdn_H 2wh2_H 2wh4_H 2wrj_H 2wrl_H 2wro_H 2wrr_H ... Length = 180

 Score =  107 bits (269), Expect = 1e-30
 Identities = 34/99 (34%), Positives = 52/99 (52%), Gaps = 2/99 (2%)

Query: 34  FLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCCCGLDKHR 93
           + + L I G+GY  RA   GR L L +G+ H V +  P  +     +   V   G+DK +
Sbjct: 83  YSKELLIKGIGY--RARLVGRALELTVGFSHPVVVEPPEGITFEVPEPTRVRVSGIDKQK 140

Query: 94  VHQFAASVRSRKPPDPFKGKGIMCADEVIKKKVGKKKSK 132
           V Q AA++R+ + P  +  KGI  A E ++ K GK  +K
Sbjct: 141 VGQVAANIRAIRKPSAYHEKGIYYAGEPVRLKPGKAGAK 179

>1nkw_E 50S ribosomal protein L6; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} SCOP: i.1.1.2 PDB: 1sm1_E* Length = 212

 Score =  107 bits (270), Expect = 1e-30
 Identities = 33/101 (32%), Positives = 50/101 (49%), Gaps = 4/101 (3%)

Query: 34  FLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCCCGLDKHR 93
           +   L++ GVG+  RA+  G+ L + +GY H V +  P+ V     +   +   G+DK  
Sbjct: 110 YTINLELRGVGF--RAKLTGKALEMNIGYSHPVIIEPPAGVTFAVPEPTRIDVSGIDKQL 167

Query: 94  VHQFAASVRSRKPPDPFKGKGIMCADEVIKKKVGK--KKSK 132
           V Q AA+VR  + PD + GKG+    E I  K GK      
Sbjct: 168 VGQVAANVRKVRKPDAYHGKGVRFVGEQIALKAGKAGATGG 208

>3bbo_I Ribosomal protein L6; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Length = 223

 Score =  107 bits (269), Expect = 3e-30
 Identities = 40/99 (40%), Positives = 65/99 (65%), Gaps = 2/99 (2%)

Query: 34  FLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCCCGLDKHR 93
           F + L +VGVGY  RA  +G+ L L LG+ H V++ +P ++++   +N  +   G DK  
Sbjct: 126 FEKKLILVGVGY--RATVDGKELVLNLGFSHPVKMQIPDSLKVKVEENTRITVSGYDKSE 183

Query: 94  VHQFAASVRSRKPPDPFKGKGIMCADEVIKKKVGKKKSK 132
           + QFAA+VR  +PP+P+KGKG+  +DE++++K GK   K
Sbjct: 184 IGQFAATVRKWRPPEPYKGKGVKYSDEIVRRKEGKAGKK 222

>1rl6_A Protein (ribosomal protein L6); RNA-binding protein, gentamicin resistance, alpha/beta protein; 2.00A {Geobacillus stearothermophilus} SCOP: d.141.1.1 d.141.1.1 PDB: 1giy_H 1ml5_h* 1c04_B 1yl3_H 2b66_H 2b9n_H 2b9p_H 1eg0_J 487d_J Length = 177

 Score =  104 bits (263), Expect = 7e-30
 Identities = 37/95 (38%), Positives = 57/95 (60%), Gaps = 2/95 (2%)

Query: 34  FLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCCCGLDKHR 93
           + + L++VGVGY  RA  +G+ L L +GY H VE+     + I       +   G DK R
Sbjct: 82  YEKALELVGVGY--RASKQGKKLVLSVGYSHPVEIEPEEGLEIEVPSQTKIIVKGADKQR 139

Query: 94  VHQFAASVRSRKPPDPFKGKGIMCADEVIKKKVGK 128
           V + AA++R+ +PP+P+KGKGI    E+++ K GK
Sbjct: 140 VGELAANIRAVRPPEPYKGKGIRYEGELVRLKEGK 174

>1vq8_E 50S ribosomal protein L6P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.141.1.1 d.141.1.1 PDB: 1vq4_E* 1vq5_E* 1vq6_E* 1vq7_E* 1s72_E* 1vq9_E* 1vqk_E* 1vql_E* 1vqm_E* 1vqn_E* 1vqo_E* 1vqp_E* 1yhq_E* 1yi2_E* 1yij_E* 1yit_E* 1yj9_E* 1yjn_E* 1yjw_E* 2otj_E* ... Length = 178

 Score = 67.6 bits (166), Expect = 2e-15
 Identities = 14/98 (14%), Positives = 31/98 (31%), Gaps = 4/98 (4%)

Query: 34  FLRFLKIVGVGYKARAEAEGRLLYLK--LGYVHDVELTVPSAVRIFCLKNNVVCCCGLDK 91
           +   +++    +  +   EG  + ++  LG       T+     +      +    G D 
Sbjct: 81  WEYGMEVFYSHFPMQVNVEGDEVVIENFLGEKAPRRTTIHGDTDVEIDGEELTVS-GPDI 139

Query: 92  HRVHQFAASVRSRKPPDPFKGKGIMCADEVIKKKVGKK 129
             V Q AA +      +  K   +      I +K  + 
Sbjct: 140 EAVGQTAADIEQLTRIND-KDVRVFQDGVYITRKPNRG 176

>2zkr_e 60S ribosomal protein L9; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Length = 192

 Score = 52.8 bits (127), Expect = 1e-09
 Identities = 15/88 (17%), Positives = 30/88 (34%), Gaps = 9/88 (10%)

Query: 34  FLRFLKIVGVGYKA--RAEAEGRLLYLKL----GYVHDVELTVPSAVRIFCLKNNVVCCC 87
           F   ++ V   +      +  G L+ ++      Y+  V +    A  +   + + +   
Sbjct: 88  FRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRPGVACSVSQAQKDELILE 147

Query: 88  GLDKHRVHQFAASVRSRKPPDPFKGKGI 115
           G D   V   AA ++        K K I
Sbjct: 148 GNDIELVSNSAALIQQ---ATTVKNKDI 172

>4a17_E RPL9, 60S ribosomal protein L9; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_E 4a1c_E 4a1e_E Length = 188

 Score = 43.1 bits (102), Expect = 4e-06
 Identities = 17/90 (18%), Positives = 31/90 (34%), Gaps = 11/90 (12%)

Query: 33  KFLRFLKIVGVGYKA--RAEAEGRLLYLK--LGYVHDVELTVPSAVRI--FCLKNNVVCC 86
            +   +K+    +        +G  + +K  LG      +     V+I     + N +  
Sbjct: 85  GYKFKMKLAFAHFPIQEAVAKDGSSIEIKHFLGEKRIRRIQALPGVKISRKDEEKNTLTL 144

Query: 87  CGLDKHRVHQFAASVR-SRKPPDPFKGKGI 115
            G+D + V Q  A +  S       K K I
Sbjct: 145 QGIDLNNVSQTCALIHQSCLV----KEKDI 170

>3u5e_H L8, RP24, YL11, 60S ribosomal protein L9-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_F 1s1i_H 3izs_F* 3j16_F 3o5h_I 3o58_I 3u5i_H 3jyw_H Length = 191

 Score = 40.8 bits (96), Expect = 2e-05
 Identities = 15/90 (16%), Positives = 28/90 (31%), Gaps = 11/90 (12%)

Query: 34  FLRFLKIVGVGYKA------RAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKN--NVVC 85
           +   ++ V   +        +  A+   +   LG      + V   V I    N  + + 
Sbjct: 86  YKYKMRYVYAHFPINVNIVEKDGAKFIEVRNFLGDKKIRNVPVRDGVTIEFSTNVKDEIV 145

Query: 86  CCGLDKHRVHQFAASVRSRKPPDPFKGKGI 115
             G     V Q AA ++        + K I
Sbjct: 146 LSGNSVEDVSQNAADLQQIC---RVRNKDI 172

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	132
1rl6_A	177	Protein (ribosomal protein L6); RNA-binding protei	100.0
1nkw_E	212	50S ribosomal protein L6; ribosome, large subunit,	100.0
3r8s_G	176	50S ribosomal protein L6; protein biosynthesis, RN	100.0
3v2d_H	180	50S ribosomal protein L6; ribosome associated inhi	100.0
2zjr_E	185	50S ribosomal protein L6; ribosome, large ribosoma	100.0
3bbo_I	223	Ribosomal protein L6; large ribosomal subunit, spi	100.0
1vq8_E	178	50S ribosomal protein L6P; ribosome 50S, protein-p	100.0
3j21_F	184	50S ribosomal protein L6P; archaea, archaeal, KINK	99.98
2zkr_e	192	60S ribosomal protein L9; protein-RNA complex, 60S	99.97
3iz5_F	190	60S ribosomal protein L9 (L6P); eukaryotic ribosom	99.96
4a17_E	188	RPL9, 60S ribosomal protein L9; eukaryotic ribosom	99.96
3u5e_H	191	L8, RP24, YL11, 60S ribosomal protein L9-A; transl	99.96
2cql_A	100	OK/SW-CL.103, 60S ribosomal protein L9; N-terminal	81.17

>1rl6_A Protein (ribosomal protein L6); RNA-binding protein, gentamicin resistance, alpha/beta protein; 2.00A {Geobacillus stearothermophilus} SCOP: d.141.1.1 d.141.1.1 PDB: 1giy_H 1ml5_h* 1c04_B 1yl3_H 2b66_H 2b9n_H 2b9p_H 1eg0_J 487d_J

Probab=100.00  E-value=1.7e-48  Score=300.96  Aligned_cols=110  Identities=34%  Similarity=0.612  Sum_probs=101.0

Q ss_pred             hhHHHHhhhhhhhhhccccceEEEEEEEEEEeeEEEeccCCEEEEEeccceeeeeeCCCCcEEEecCCeEEEEEecCHHH
Q 046142           14 ALNHMSNLCDKFTLTWMEAKFLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCCCGLDKHR   93 (132)
Q Consensus        14 ~~~h~~n~~~~~~i~Gv~~gf~~~L~lvGvGYra~i~~~g~~L~l~LGySH~i~~~IP~~V~v~v~~~t~I~l~GiDKq~   93 (132)
                      --+|++||+     .||++||+++|+|+|+||||++  +|+.|.|+||||||+.++||+||+++++++|+|+|+|+|||.
T Consensus        67 ~rsli~Nmi-----~GVt~Gf~~~L~lvGvGyra~~--~G~~l~l~LG~Shpv~~~iP~gi~v~v~~~t~I~v~G~Dkq~  139 (177)
T 1rl6_A           67 TRSLLANMV-----EGVSKGYEKALELVGVGYRASK--QGKKLVLSVGYSHPVEIEPEEGLEIEVPSQTKIIVKGADKQR  139 (177)
T ss_dssp             HHHHHHHHH-----HHHHTCEEEEEEEESTTCEEEE--ETTEEEEESSSSSCEEECCCTTEEEEEEETTEEEEEESCHHH
T ss_pred             HHHHHhCEE-----EeEcCCcEEEEEEEeeceEEEe--cCCEEEEEecCCccEEEeCCCCcEEEECCCCEEEEEeCCHHH
Confidence            457888888     9999999999999999999997  899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhccCCCCCCCCCceeecceEEEecCCccc
Q 046142           94 VHQFAASVRSRKPPDPFKGKGIMCADEVIKKKVGKKK  130 (132)
Q Consensus        94 VgqfAa~Ir~~r~pepYKGKGI~~~~E~I~~K~gKk~  130 (132)
                      |+||||+||+||||||||||||+|.||+|+||+||++
T Consensus       140 Vgq~AA~Ir~~R~PepYKGKGI~y~~E~i~~K~gK~~  176 (177)
T 1rl6_A          140 VGELAANIRAVRPPEPYKGKGIRYEGELVRLKEGKTG  176 (177)
T ss_dssp             HHHHHHHHHTTSCCCTTTCCEEEETTCCCCC------
T ss_pred             HHHHHHHHhccCCCCCcCCCcEeECCeEEEEcCccCC
Confidence            9999999999999999999999999999999999985

>1nkw_E 50S ribosomal protein L6; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} SCOP: i.1.1.2 PDB: 1sm1_E*

Probab=100.00  E-value=1.1e-47  Score=303.58  Aligned_cols=110  Identities=30%  Similarity=0.490  Sum_probs=106.3

Q ss_pred             hHHHHhhhhhhhhhccccceEEEEEEEEEEeeEEEeccCCEEEEEeccceeeeeeCCCCcEEEecCCeEEEEEecCHHHH
Q 046142           15 LNHMSNLCDKFTLTWMEAKFLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCCCGLDKHRV   94 (132)
Q Consensus        15 ~~h~~n~~~~~~i~Gv~~gf~~~L~lvGvGYra~i~~~g~~L~l~LGySH~i~~~IP~~V~v~v~~~t~I~l~GiDKq~V   94 (132)
                      -+|++||+     .||++||+++|+|+|+||||++  +|+.|.|+||||||+.++||+||+|+++++|+|+|+|+|||.|
T Consensus        96 rslI~NMI-----~GVt~Gf~kkLelvGvGYra~~--~G~~L~L~LG~SHpv~~~iP~GI~v~v~~~t~Iiv~GiDKq~V  168 (212)
T 1nkw_E           96 RTLVANAV-----KGVSDGYTINLELRGVGFRAKL--TGKALEMNIGYSHPVIIEPPAGVTFAVPEPTRIDVSGIDKQLV  168 (212)
T ss_pred             HHHhhCEE-----EeeccCeEEEEEEeeeeeEEEc--CCCEEEEEccCCccEEEECCCCeEEEeCCCCEEEEEeCCHHHH
Confidence            47888888     9999999999999999999997  8999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhccCCCCCCCCCceeecceEEEecCCcccC
Q 046142           95 HQFAASVRSRKPPDPFKGKGIMCADEVIKKKVGKKKS  131 (132)
Q Consensus        95 gqfAa~Ir~~r~pepYKGKGI~~~~E~I~~K~gKk~~  131 (132)
                      |||||+||+||+|||||||||+|.||+|++|+||++|
T Consensus       169 Gq~AA~IR~~R~PEPYKGKGIry~~E~I~rK~gK~~k  205 (212)
T 1nkw_E          169 GQVAANVRKVRKPDAYHGKGVRFVGEQIALKAGKAGA  205 (212)
T ss_pred             HHHHHHHhccCCCCCcCCCcEeECCeEEEEcCccccC
Confidence            9999999999999999999999999999999999865

>3r8s_G 50S ribosomal protein L6; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_E 1p86_E 2awb_G 2aw4_G 2i2v_G 2j28_G 2i2t_G* 2qao_G* 2qba_G* 2qbc_G* 2qbe_G 2qbg_G 2qbi_G* 2qbk_G* 2qov_G 2qox_G 2qoz_G* 2qp1_G* 2rdo_G 2vhm_G ...

Probab=100.00  E-value=9.3e-48  Score=296.54  Aligned_cols=111  Identities=34%  Similarity=0.625  Sum_probs=107.0

Q ss_pred             chhHHHHhhhhhhhhhccccceEEEEEEEEEEeeEEEeccCCEEEEEeccceeeeeeCCCCcEEEecCCeEEEEEecCHH
Q 046142           13 DALNHMSNLCDKFTLTWMEAKFLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCCCGLDKH   92 (132)
Q Consensus        13 ~~~~h~~n~~~~~~i~Gv~~gf~~~L~lvGvGYra~i~~~g~~L~l~LGySH~i~~~IP~~V~v~v~~~t~I~l~GiDKq   92 (132)
                      +--+|++||+     .||++||+++|+++|+||||++  +|+.|.|+||||||+.++||+||+++++++|+|+|+|+|+|
T Consensus        66 t~rsli~NmI-----~GVt~Gf~~kL~lvgvgyra~~--~g~~l~l~LG~sh~v~~~ip~gv~v~v~~~t~Iil~G~Dke  138 (176)
T 3r8s_G           66 TARALLNSMV-----IGVTEGFTKKLQLVGVGYRAAV--KGNVINLSLGFSHPVDHQLPAGITAECPTQTEIVLKGADKQ  138 (176)
T ss_dssp             HHHHHHHHTT-----THHHHCEEECEEEESTTCEEEC--SSSEEEEECSSSSCEEEECCTTCEEEEEETTEEEEEESCHH
T ss_pred             HHHHHHHhHh-----hhcccCeEEEEEEeeeeeEEEe--CCCEEEEEecCCeeEEEECCCCeEEEECCCCEEEEEECcHH
Confidence            3468899999     9999999999999999999997  89999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhccCCCCCCCCCceeecceEEEecCCccc
Q 046142           93 RVHQFAASVRSRKPPDPFKGKGIMCADEVIKKKVGKKK  130 (132)
Q Consensus        93 ~VgqfAa~Ir~~r~pepYKGKGI~~~~E~I~~K~gKk~  130 (132)
                      .|+||||+||+||||||||||||+|.||+|+||+|||+
T Consensus       139 ~Vgq~AA~Ir~~R~PepYKGKGI~y~~E~i~~K~gKkk  176 (176)
T 3r8s_G          139 VIGQVAADLRAYRRPEPYKGKGVRYADEVVRTKEAKKK  176 (176)
T ss_dssp             HHHHHHHHHHHTTCCCSSSCCEEEESSCCCCCCCCCCC
T ss_pred             HHHHHHHHhhccCCCCCccCCceeECCeEEEeccccCC
Confidence            99999999999999999999999999999999999985

>3v2d_H 50S ribosomal protein L6; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_F 2hgj_H 2hgq_H 2hgu_H 1vsa_F 2j03_H 2jl6_H 2jl8_H 2v47_H 2v49_H 2wdi_H 2wdj_H 2wdl_H 2wdn_H 2wh2_H 2wh4_H 2wrj_H 2wrl_H 2wro_H 2wrr_H ...

Probab=100.00  E-value=2.5e-47  Score=295.02  Aligned_cols=112  Identities=30%  Similarity=0.474  Sum_probs=105.5

Q ss_pred             chhHHHHhhhhhhhhhccccceEEEEEEEEEEeeEEEeccCCEEEEEeccceeeeeeCCCCcEEEecCCeEEEEEecCHH
Q 046142           13 DALNHMSNLCDKFTLTWMEAKFLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCCCGLDKH   92 (132)
Q Consensus        13 ~~~~h~~n~~~~~~i~Gv~~gf~~~L~lvGvGYra~i~~~g~~L~l~LGySH~i~~~IP~~V~v~v~~~t~I~l~GiDKq   92 (132)
                      +--+|++||+     .||++||+++|+++|+||||++  +|+.|.|+||||||+.++||+||+++++++|+|+|+|+|+|
T Consensus        67 t~rsli~NmI-----~GVt~Gf~~kL~lvgvgyra~~--~g~~l~l~LG~sh~v~~~ip~gv~v~v~~~t~Iil~G~Dke  139 (180)
T 3v2d_H           67 LTRTLIANAV-----KGVSEGYSKELLIKGIGYRARL--VGRALELTVGFSHPVVVEPPEGITFEVPEPTRVRVSGIDKQ  139 (180)
T ss_dssp             HHHHHHHHHH-----HHHHTCEEEEEEEESTTCEEEE--ETTEEEEECSSSSCEEECCCTTCEEECSSTTEEEEEESCHH
T ss_pred             HHHHHHhhhE-----EeecCCcEEEEEEEEEeeEEEE--CCCEEEEEecCCeeEEEECCCCeEEEECCCCEEEEEECcHH
Confidence            3457899998     9999999999999999999988  89999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhccCCCCCCCCCceeecceEEEecCCcccC
Q 046142           93 RVHQFAASVRSRKPPDPFKGKGIMCADEVIKKKVGKKKS  131 (132)
Q Consensus        93 ~VgqfAa~Ir~~r~pepYKGKGI~~~~E~I~~K~gKk~~  131 (132)
                      .|+||||+||++|+|||||||||+|+||+|++|+||++|
T Consensus       140 ~Vgq~AA~Ir~~r~PepYKGKGIry~~e~I~~K~gK~~~  178 (180)
T 3v2d_H          140 KVGQVAANIRAIRKPSAYHEKGIYYAGEPVRLKPGKAGA  178 (180)
T ss_dssp             HHHHHHHHHHHHTCCCSSSSCEEEETTCCCCCCCCC---
T ss_pred             HHHHHHHHhcccCCCCCcCCCcccCCCEEEEEeCccccC
Confidence            999999999999999999999999999999999999864

>2zjr_E 50S ribosomal protein L6; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.141.1.1 d.141.1.1 PDB: 1nwx_E* 1xbp_E* 2zjp_E* 2zjq_E 1nwy_E 3cf5_E* 3dll_E* 3pio_E* 3pip_E* 1pnu_E 1pny_E 1vor_H 1vou_H 1vow_H 1voy_H 1vp0_H

Probab=100.00  E-value=1.6e-48  Score=302.97  Aligned_cols=111  Identities=30%  Similarity=0.487  Sum_probs=104.6

Q ss_pred             hhHHHHhhhhhhhhhccccceEEEEEEEEEEeeEEEeccCCEEEEEeccceeeeeeCCCCcEEEecCCeEEEEEecCHHH
Q 046142           14 ALNHMSNLCDKFTLTWMEAKFLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCCCGLDKHR   93 (132)
Q Consensus        14 ~~~h~~n~~~~~~i~Gv~~gf~~~L~lvGvGYra~i~~~g~~L~l~LGySH~i~~~IP~~V~v~v~~~t~I~l~GiDKq~   93 (132)
                      --+|++||+     .||++||+++|+|+|+||||++  +|+.|.|+||||||+.++||+||+++++++|+|+|+|+|||.
T Consensus        68 ~rslI~NmI-----~GVt~Gf~kkL~lvGvGYra~~--~G~~l~l~LG~Shpv~~~iP~gI~v~v~~~t~I~l~G~DKq~  140 (185)
T 2zjr_E           68 TRTLVANAV-----KGVSDGYTINLELRGVGFRAKL--TGKALEMNIGYSHPVIIEPPAGVTFAVPEPTRIDVSGIDKQL  140 (185)
T ss_dssp             HHHHHHHHH-----HHHHHCEEEEEECBSTTCCCCC--BTTBCBCCSSCSSCCBCCCCTTEEEECSSTTEEEEEESSHHH
T ss_pred             HHHHhhcEE-----eeeccCcEEEEEEeeeccEEEE--cCCEEEEEeeCCccEEEECCCCeEEEECCCCEEEEEecCHHH
Confidence            346888888     9999999999999999999997  899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhccCCCCCCCCCceeecceEEEecCCcccC
Q 046142           94 VHQFAASVRSRKPPDPFKGKGIMCADEVIKKKVGKKKS  131 (132)
Q Consensus        94 VgqfAa~Ir~~r~pepYKGKGI~~~~E~I~~K~gKk~~  131 (132)
                      |+||||+||+||||||||||||+|.||+|+||+||++|
T Consensus       141 Vgq~AA~Ir~~R~PepYKGKGI~y~~E~i~~K~gK~~k  178 (185)
T 2zjr_E          141 VGQVAANVRKVRKPDAYHGKGVRFVGEQIALKAGKAGA  178 (185)
T ss_dssp             HHHHHHHHHHHTCCCTTTCCBCCCSSCCCCCCCCC---
T ss_pred             HHHHHHHHhccCCCCCcCCCcEeECCeEEEEcCccccC
Confidence            99999999999999999999999999999999999865

>3bbo_I Ribosomal protein L6; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}

Probab=100.00  E-value=8.4e-48  Score=306.31  Aligned_cols=110  Identities=35%  Similarity=0.692  Sum_probs=105.7

Q ss_pred             hHHHHhhhhhhhhhccccceEEEEEEEEEEeeEEEeccCCEEEEEeccceeeeeeCCCCcEEEecCCeEEEEEecCHHHH
Q 046142           15 LNHMSNLCDKFTLTWMEAKFLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCCCGLDKHRV   94 (132)
Q Consensus        15 ~~h~~n~~~~~~i~Gv~~gf~~~L~lvGvGYra~i~~~g~~L~l~LGySH~i~~~IP~~V~v~v~~~t~I~l~GiDKq~V   94 (132)
                      -+|++||+     .||++||+++|+|+|+||||++  +|+.|.|+||||||+.++||+||+|+++++|+|+|+|+|||.|
T Consensus       112 rslI~NMI-----~GVt~Gf~kkLelvGvGYra~~--~G~~L~L~LG~SHpv~~~iP~GI~v~v~~~t~Iii~GiDKq~V  184 (223)
T 3bbo_I          112 RTLTDNMV-----VGVSKGFEKKLILVGVGYRATV--DGKELVLNLGFSHPVKMQIPDSLKVKVEENTRITVSGYDKSEI  184 (223)
T ss_dssp             TTTTTHHH-----HHTTTCEEECEECCSTTCCEEE--CSSEEEECSSCSSCEEEECCSSEEEECSSTTBCEEEESSSHHH
T ss_pred             HHHhhcEE-----EeeccCcEEEEEEeeeceEEEe--cCCEEEEEeeCCccEEEECCCCeEEEeCCCCEEEEEeCCHHHH
Confidence            46778888     9999999999999999999997  8999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhccCCCCCCCCCceeecceEEEecCCcccC
Q 046142           95 HQFAASVRSRKPPDPFKGKGIMCADEVIKKKVGKKKS  131 (132)
Q Consensus        95 gqfAa~Ir~~r~pepYKGKGI~~~~E~I~~K~gKk~~  131 (132)
                      |||||+||+||||||||||||+|.||+|++|+||++|
T Consensus       185 gq~AA~IR~~R~PEPYKGKGI~y~~E~I~rK~gK~~k  221 (223)
T 3bbo_I          185 GQFAATVRKWRPPEPYKGKGVKYSDEIVRRKEGKAGK  221 (223)
T ss_dssp             HHHHHHTTSSSCCCTTTCCSCEETTCCCCCCCCCCSC
T ss_pred             HHHHHHHhccCCCCCcCCCcEeECCeEEEEecccccc
Confidence            9999999999999999999999999999999999853

>1vq8_E 50S ribosomal protein L6P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.141.1.1 d.141.1.1 PDB: 1vq4_E* 1vq5_E* 1vq6_E* 1vq7_E* 1s72_E* 1vq9_E* 1vqk_E* 1vql_E* 1vqm_E* 1vqn_E* 1vqo_E* 1vqp_E* 1yhq_E* 1yi2_E* 1yij_E* 1yit_E* 1yj9_E* 1yjn_E* 1yjw_E* 2otj_E* ...

Probab=100.00  E-value=6e-36  Score=231.20  Aligned_cols=103  Identities=16%  Similarity=0.132  Sum_probs=97.2

Q ss_pred             chhHHHHhhhhhhhhhccccceEEEEEEEEEEe--eEEEeccCCEEEE--EeccceeeeeeCCCCcEEEecCCeEEEEEe
Q 046142           13 DALNHMSNLCDKFTLTWMEAKFLRFLKIVGVGY--KARAEAEGRLLYL--KLGYVHDVELTVPSAVRIFCLKNNVVCCCG   88 (132)
Q Consensus        13 ~~~~h~~n~~~~~~i~Gv~~gf~~~L~lvGvGY--ra~i~~~g~~L~l--~LGySH~i~~~IP~~V~v~v~~~t~I~l~G   88 (132)
                      +--+|++||+     .||++||+++|+++|+||  ||++  +|+.|.|  +||||||+.++||+||++++++ |+|+|+|
T Consensus        65 t~rsli~Nmi-----~GVt~Gf~~~L~ivGvGypira~~--~g~~l~l~N~LG~shpv~~~ip~gi~v~v~~-~~I~v~G  136 (178)
T 1vq8_E           65 TFQSHIENMF-----HGVTEGWEYGMEVFYSHFPMQVNV--EGDEVVIENFLGEKAPRRTTIHGDTDVEIDG-EELTVSG  136 (178)
T ss_dssp             HHHHHHHHHH-----HHHHTCEEEEEEEECSSSCCEEEE--ETTEEEEESGGGCSSCEEEECCTTCEEEEET-TEEEEEE
T ss_pred             HHHHHHcCEE-----EEEccCeEEEEEEEeeCCceEEEE--cCCEEEEEccccccccEEEeCCCCeEEEEeC-CEEEEEE
Confidence            3457889998     999999999999999999  7877  8999999  9999999999999999999999 8999999


Q ss_pred             cCHHHHHHHHHHhhccCCCCCCCCCce--eecceEEEecC
Q 046142           89 LDKHRVHQFAASVRSRKPPDPFKGKGI--MCADEVIKKKV  126 (132)
Q Consensus        89 iDKq~VgqfAa~Ir~~r~pepYKGKGI--~~~~E~I~~K~  126 (132)
                      +|||.||||||+||++|+|   |||||  |+||++|..|.
T Consensus       137 ~Dkq~Vgq~AA~Ir~~r~p---KGKGIr~F~DGiyi~~k~  173 (178)
T 1vq8_E          137 PDIEAVGQTAADIEQLTRI---NDKDVRVFQDGVYITRKP  173 (178)
T ss_dssp             SCHHHHHHHHHHHHHTTCC---SSSCTTTCCCEEEEEECC
T ss_pred             CCHHHHHHHHHHHhccCCC---CCCceeEEECCEEEEecc
Confidence            9999999999999999999   99998  88999999884

>3j21_F 50S ribosomal protein L6P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=99.98  E-value=8.3e-33  Score=214.49  Aligned_cols=108  Identities=19%  Similarity=0.195  Sum_probs=97.7

Q ss_pred             chhHHHHhhhhhhhhhccccceEEEEEEEEEEeeEEEeccCCEEEEE--eccceeeeeeCCCCcEEEecCCeEEEEEecC
Q 046142           13 DALNHMSNLCDKFTLTWMEAKFLRFLKIVGVGYKARAEAEGRLLYLK--LGYVHDVELTVPSAVRIFCLKNNVVCCCGLD   90 (132)
Q Consensus        13 ~~~~h~~n~~~~~~i~Gv~~gf~~~L~lvGvGYra~i~~~g~~L~l~--LGySH~i~~~IP~~V~v~v~~~t~I~l~GiD   90 (132)
                      +--+|++||+     .||++||+++|+++|+|||+....+|+.|.|.  ||||||+.++||+||+++++++ +|+|+|+|
T Consensus        70 t~rsli~NmI-----~GVt~Gf~~kL~lvgvgypira~~~g~~l~l~n~LG~sh~v~~~ip~gv~v~v~~~-~Iil~G~D  143 (184)
T 3j21_F           70 TFAAHIRNMI-----KGVTEGFTYKLKVVYSHFPISVKVQGDEVIIENFLGEKAPRKAKILPGVTVKVRGQ-EIIVEGID  143 (184)
T ss_dssp             HHHHHHHHHH-----HHHHTCEEEEEEEECSSSCCEEEEETTEEEEECGGGCSSCEEEECCTTEEEEEETT-EEEEEESC
T ss_pred             HHHHHHHhhh-----eeeccCeEEEEEEEEecccceEEEcCCEEEEEecCCccccEEEECCCCeEEEecCC-EEEEEECC
Confidence            3457899999     99999999999999999944444489999885  9999999999999999999997 99999999


Q ss_pred             HHHHHHHHHHhhccCCCCCCCCCceee--cceEEEecCCcc
Q 046142           91 KHRVHQFAASVRSRKPPDPFKGKGIMC--ADEVIKKKVGKK  129 (132)
Q Consensus        91 Kq~VgqfAa~Ir~~r~pepYKGKGI~~--~~E~I~~K~gKk  129 (132)
                      ||.|+||||+||++++   ||||+||+  ||.||..|.||.
T Consensus       144 ke~Vgq~AA~Ir~~~~---vK~KDiR~F~DGiyv~ek~~~~  181 (184)
T 3j21_F          144 KEAVGQTAANIEQATR---ITKWDRRIFQDGIYIVEKAGKP  181 (184)
T ss_dssp             HHHHHHHHHHHHHHHC---CCSSCSSSCCCEEEESCSSSCC
T ss_pred             HHHHHHHHHHHhhccc---cCCCcccEeeCCEEEEecCccc
Confidence            9999999999999998   89999876  899999998763

>2zkr_e 60S ribosomal protein L9; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}

Probab=99.97  E-value=2.6e-32  Score=212.80  Aligned_cols=105  Identities=17%  Similarity=0.146  Sum_probs=95.9

Q ss_pred             chhHHHHhhhhhhhhhccccceEEEEEEEEEEeeEE--EeccCCEEEE--EeccceeeeeeCCCCcEEEecCC--eEEEE
Q 046142           13 DALNHMSNLCDKFTLTWMEAKFLRFLKIVGVGYKAR--AEAEGRLLYL--KLGYVHDVELTVPSAVRIFCLKN--NVVCC   86 (132)
Q Consensus        13 ~~~~h~~n~~~~~~i~Gv~~gf~~~L~lvGvGYra~--i~~~g~~L~l--~LGySH~i~~~IP~~V~v~v~~~--t~I~l   86 (132)
                      +--+|++||+     .||++||+++|+|+|+||||+  ++.+|+.|.|  +||||||+.++||+||+++++++  |+|+|
T Consensus        72 t~rsli~NmI-----~GVt~Gf~~~L~lvGvGyra~v~~e~~g~~l~l~N~LG~Sh~v~~~iP~gv~v~v~~~~~t~I~v  146 (192)
T 2zkr_e           72 TICSHVQNMI-----KGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRPGVACSVSQAQKDELIL  146 (192)
T ss_dssp             HHHHHHHHHH-----HHHHTCEEEEEEEECSSSCCEEEECTTCSEEEEESGGGCSSCEEEECCSSCEEEECSSCSSEEEE
T ss_pred             HHHHHHhCEE-----EeeccCcEEEEEEEEecceeEEEEccCCCEEEEeCcCCCcccEEeeCCCCeEEEEcCCCCCEEEE
Confidence            3457888888     999999999999999999998  5557899999  89999999999999999999987  99999


Q ss_pred             EecCHHHHHHHHHHhhccCCCCCCCCCce--eecceEEEec
Q 046142           87 CGLDKHRVHQFAASVRSRKPPDPFKGKGI--MCADEVIKKK  125 (132)
Q Consensus        87 ~GiDKq~VgqfAa~Ir~~r~pepYKGKGI--~~~~E~I~~K  125 (132)
                      +|+|||.||||||+||+++++   |+|++  |.||-|+..|
T Consensus       147 ~GiDKq~Vgq~AA~IR~~~~v---k~kD~R~F~Dgiyv~~k  184 (192)
T 2zkr_e          147 EGNDIELVSNSAALIQQATTV---KNKDIRKFLDGIYVSEK  184 (192)
T ss_dssp             EESCHHHHHHHHHHHHHHTCC---SSSCTTTCCCEEEEEEC
T ss_pred             EeCCHHHHHHHHHHHHhhCcC---CCCCccEeecCEEEEEe
Confidence            999999999999999999999   77774  5689998777

>4a17_E RPL9, 60S ribosomal protein L9; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_E 4a1c_E 4a1e_E

Probab=99.96  E-value=8e-30  Score=198.30  Aligned_cols=106  Identities=17%  Similarity=0.177  Sum_probs=94.9

Q ss_pred             chhHHHHhhhhhhhhhccccceEEEEEEEEEEeeEEE--eccCCEEEEE--eccceeeeeeCCCCcEEEecCC--eEEEE
Q 046142           13 DALNHMSNLCDKFTLTWMEAKFLRFLKIVGVGYKARA--EAEGRLLYLK--LGYVHDVELTVPSAVRIFCLKN--NVVCC   86 (132)
Q Consensus        13 ~~~~h~~n~~~~~~i~Gv~~gf~~~L~lvGvGYra~i--~~~g~~L~l~--LGySH~i~~~IP~~V~v~v~~~--t~I~l   86 (132)
                      +--+|++||+     .||++||+++|+++|+||||++  ..+|+.|.|.  ||||||+.++||+||+++++++  ++|+|
T Consensus        70 t~rsli~NmI-----~GVt~Gf~~kL~lvgvgyr~~~~v~~~G~~l~l~N~LG~sh~v~~~ip~gv~v~v~~~~k~eIil  144 (188)
T 4a17_E           70 SIASQIKNMI-----RGVTEGYKFKMKLAFAHFPIQEAVAKDGSSIEIKHFLGEKRIRRIQALPGVKISRKDEEKNTLTL  144 (188)
T ss_dssp             HHHHHHHHHH-----HHHHSCEEEEEEEECSSSCCEEEECSSSCEEEEECGGGCCCEEEEECCTTCEEECCTTSSSEEEE
T ss_pred             HHHHHHHhhe-----EeeccCeEEEEEEEEEcccceEEEccCCCEEEEEeccCCcccEEEECCCCeEEEECCCCCCEEEE
Confidence            3457899998     9999999999999999999765  4578999995  9999999999999999999998  89999


Q ss_pred             EecCHHHHHHHHHHhhccCCCCCCCCCce--eecceEEEecC
Q 046142           87 CGLDKHRVHQFAASVRSRKPPDPFKGKGI--MCADEVIKKKV  126 (132)
Q Consensus        87 ~GiDKq~VgqfAa~Ir~~r~pepYKGKGI--~~~~E~I~~K~  126 (132)
                      +|+|||.|+||||+||+....   |+|+|  |.||-||..|.
T Consensus       145 ~G~Dke~Vgq~AA~Ir~~~~v---k~kD~R~F~DGiyv~ek~  183 (188)
T 4a17_E          145 QGIDLNNVSQTCALIHQSCLV---KEKDIRQFLDGIYVSDKR  183 (188)
T ss_dssp             EESCHHHHHHHHHHHHHHTCC---CSSCHHHHCCEEEEEEEE
T ss_pred             EEcCHHHHHHHHHHHHhhccc---CCCcccEeecCeEEEEeE
Confidence            999999999999999999865   88885  56899988773

>3u5e_H L8, RP24, YL11, 60S ribosomal protein L9-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_F 1s1i_H 3izs_F* 3j16_F 3o5h_I 3o58_I 3u5i_H 4b6a_H 3jyw_H

Probab=99.96  E-value=1.6e-29  Score=197.05  Aligned_cols=106  Identities=16%  Similarity=0.150  Sum_probs=93.9

Q ss_pred             chhHHHHhhhhhhhhhccccceEEEEEEEEEEeeE--EE--eccCCEEEEE--eccceeeeeeCCCCcEEEecCC--eEE
Q 046142           13 DALNHMSNLCDKFTLTWMEAKFLRFLKIVGVGYKA--RA--EAEGRLLYLK--LGYVHDVELTVPSAVRIFCLKN--NVV   84 (132)
Q Consensus        13 ~~~~h~~n~~~~~~i~Gv~~gf~~~L~lvGvGYra--~i--~~~g~~L~l~--LGySH~i~~~IP~~V~v~v~~~--t~I   84 (132)
                      +--+|++||+     .||++||+++|+++|+||||  ++  ..+|+.|.|+  ||||||+.++||+||+++++++  |+|
T Consensus        70 t~rsli~NmI-----~GVt~Gf~~kL~lvgvgyri~a~v~~~~~G~~l~l~n~LG~sh~v~~~ip~Gv~v~v~~~~kteI  144 (191)
T 3u5e_H           70 TVKSLVDNMI-----TGVTKGYKYKMRYVYAHFPINVNIVEKDGAKFIEVRNFLGDKKIRNVPVRDGVTIEFSTNVKDEI  144 (191)
T ss_dssp             HHHHHHHHHH-----HHHHTCEEEEEEEECSSSCCEEEEECSSSCCEEEEECGGGCSSCEEEECCTTEEEEECTTSTTEE
T ss_pred             HHHHHHHhhe-----eeeccCEEEEEEEEEEeeeEEEEEEEcCCCCEEEEEeccCCcccEEEECCCCEEEEECCCCCCEE
Confidence            3457899998     99999999999999999995  44  4488999995  9999999999999999999996  999


Q ss_pred             EEEecCHHHHHHHHHHhhccCCCCCCCCCce--eecceEEEecC
Q 046142           85 CCCGLDKHRVHQFAASVRSRKPPDPFKGKGI--MCADEVIKKKV  126 (132)
Q Consensus        85 ~l~GiDKq~VgqfAa~Ir~~r~pepYKGKGI--~~~~E~I~~K~  126 (132)
                      +|+|+|||.|+||||+||+....   |+|+|  |.||-||..|.
T Consensus       145 il~G~Dke~Vgq~AA~Irq~~~v---k~kD~R~FlDGiyv~ek~  185 (191)
T 3u5e_H          145 VLSGNSVEDVSQNAADLQQICRV---RNKDIRKFLDGIYVSHKG  185 (191)
T ss_dssp             EEEESCHHHHHHHHHHHHHTTCC---CSSCTTTCCCEEEEEEEE
T ss_pred             EEEECCHHHHHHHHHHHHhhccc---CCCcccEeecCeEEEEee
Confidence            99999999999999999999865   77774  66899998773

>2cql_A OK/SW-CL.103, 60S ribosomal protein L9; N-terminal domain, alpha and beta (A+B), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.141.1.1

Probab=81.17  E-value=0.26  Score=34.02  Aligned_cols=18  Identities=11%  Similarity=-0.014  Sum_probs=15.0

Q ss_pred             hhHHHHhhhhhhhhhccccceEE
Q 046142           14 ALNHMSNLCDKFTLTWMEAKFLR   36 (132)
Q Consensus        14 ~~~h~~n~~~~~~i~Gv~~gf~~   36 (132)
                      --+|++||+     .||++||++
T Consensus        80 ~RslI~NMI-----~GVt~Gf~y   97 (100)
T 2cql_A           80 ICSHVQNMI-----KGVTLGSGP   97 (100)
T ss_dssp             HHHHHHHHH-----HHHHTSCCS
T ss_pred             HHHHHHhhh-----EeecCCEEE
Confidence            347889988     999999975

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	132
d2qamg2	95	d.141.1.1 (G:82-176) Ribosomal protein L6 {Escheri	3e-30
d1rl6a2	89	d.141.1.1 (A:82-170) Ribosomal protein L6 {Bacillu	2e-27
d2j01h2	89	d.141.1.1 (H:83-171) Ribosomal protein L6 {Thermus	2e-27
d2zjre1	90	d.141.1.1 (E:83-172) Ribosomal protein L6 {Deinoco	4e-25

>d2qamg2 d.141.1.1 (G:82-176) Ribosomal protein L6 {Escherichia coli [TaxId: 562]} Length = 95

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L6
superfamily: Ribosomal protein L6
family: Ribosomal protein L6
domain: Ribosomal protein L6
species: Escherichia coli [TaxId: 562]

 Score =  102 bits (256), Expect = 3e-30
 Identities = 38/97 (39%), Positives = 59/97 (60%), Gaps = 2/97 (2%)

Query: 34  FLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCCCGLDKHR 93
           F + L++VGVGY  RA  +G ++ L LG+ H V+  +P+ +   C     +   G DK  
Sbjct: 1   FTKKLQLVGVGY--RAAVKGNVINLSLGFSHPVDHQLPAGITAECPTQTEIVLKGADKQV 58

Query: 94  VHQFAASVRSRKPPDPFKGKGIMCADEVIKKKVGKKK 130
           + Q AA +R+ + P+P+KGKG+  ADEV++ K  KKK
Sbjct: 59  IGQVAADLRAYRRPEPYKGKGVRYADEVVRTKEAKKK 95

>d1rl6a2 d.141.1.1 (A:82-170) Ribosomal protein L6 {Bacillus stearothermophilus [TaxId: 1422]} Length = 89

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L6
superfamily: Ribosomal protein L6
family: Ribosomal protein L6
domain: Ribosomal protein L6
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 94.8 bits (236), Expect = 2e-27
 Identities = 34/90 (37%), Positives = 54/90 (60%), Gaps = 2/90 (2%)

Query: 34  FLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCCCGLDKHR 93
           + + L++VGVGY  RA  +G+ L L +GY H VE+     + I       +   G DK R
Sbjct: 1   YEKALELVGVGY--RASKQGKKLVLSVGYSHPVEIEPEEGLEIEVPSQTKIIVKGADKQR 58

Query: 94  VHQFAASVRSRKPPDPFKGKGIMCADEVIK 123
           V + AA++R+ +PP+P+KGKGI    E+++
Sbjct: 59  VGELAANIRAVRPPEPYKGKGIRYEGELVR 88

>d2j01h2 d.141.1.1 (H:83-171) Ribosomal protein L6 {Thermus thermophilus [TaxId: 274]} Length = 89

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L6
superfamily: Ribosomal protein L6
family: Ribosomal protein L6
domain: Ribosomal protein L6
species: Thermus thermophilus [TaxId: 274]

 Score = 94.7 bits (236), Expect = 2e-27
 Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 2/90 (2%)

Query: 34  FLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCCCGLDKHR 93
           + + L I G+GY  RA   GR L L +G+ H V +  P  +     +   V   G+DK +
Sbjct: 1   YSKELLIKGIGY--RARLVGRALELTVGFSHPVVVEPPEGITFEVPEPTRVRVSGIDKQK 58

Query: 94  VHQFAASVRSRKPPDPFKGKGIMCADEVIK 123
           V Q AA++R+ + P  +  KGI  A E ++
Sbjct: 59  VGQVAANIRAIRKPSAYHEKGIYYAGEPVR 88

>d2zjre1 d.141.1.1 (E:83-172) Ribosomal protein L6 {Deinococcus radiodurans [TaxId: 1299]} Length = 90

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L6
superfamily: Ribosomal protein L6
family: Ribosomal protein L6
domain: Ribosomal protein L6
species: Deinococcus radiodurans [TaxId: 1299]

 Score = 89.1 bits (221), Expect = 4e-25
 Identities = 31/92 (33%), Positives = 48/92 (52%), Gaps = 2/92 (2%)

Query: 34  FLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCCCGLDKHR 93
           +   L++ GVG+  RA+  G+ L + +GY H V +  P+ V     +   +   G+DK  
Sbjct: 1   YTINLELRGVGF--RAKLTGKALEMNIGYSHPVIIEPPAGVTFAVPEPTRIDVSGIDKQL 58

Query: 94  VHQFAASVRSRKPPDPFKGKGIMCADEVIKKK 125
           V Q AA+VR  + PD + GKG+    E I  K
Sbjct: 59  VGQVAANVRKVRKPDAYHGKGVRFVGEQIALK 90

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	132
d2qamg2	95	Ribosomal protein L6 {Escherichia coli [TaxId: 562	100.0
d1rl6a2	89	Ribosomal protein L6 {Bacillus stearothermophilus	100.0
d2zjre1	90	Ribosomal protein L6 {Deinococcus radiodurans [Tax	100.0
d2j01h2	89	Ribosomal protein L6 {Thermus thermophilus [TaxId:	100.0
d1vqoe2	93	Ribosomal protein L6 {Archaeon Haloarcula marismor	99.73
d1rl6a1	75	Ribosomal protein L6 {Bacillus stearothermophilus	81.55
d2cqla1	87	Ribosomal protein L6 {Human (Homo sapiens) [TaxId:	80.9

>d2qamg2 d.141.1.1 (G:82-176) Ribosomal protein L6 {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L6
superfamily: Ribosomal protein L6
family: Ribosomal protein L6
domain: Ribosomal protein L6
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.8e-47  Score=268.33  Aligned_cols=95  Identities=39%  Similarity=0.726  Sum_probs=92.5

Q ss_pred             eEEEEEEEEEEeeEEEeccCCEEEEEeccceeeeeeCCCCcEEEecCCeEEEEEecCHHHHHHHHHHhhccCCCCCCCCC
Q 046142           34 FLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCCCGLDKHRVHQFAASVRSRKPPDPFKGK  113 (132)
Q Consensus        34 f~~~L~lvGvGYra~i~~~g~~L~l~LGySH~i~~~IP~~V~v~v~~~t~I~l~GiDKq~VgqfAa~Ir~~r~pepYKGK  113 (132)
                      |+++|+|+||||||++  +|+.|.|+||||||+.++||+||+++++++|.|+|+|+|||.||||||.||++|||||||||
T Consensus         1 f~k~L~lvGVGYRa~~--~g~~L~l~LGySH~i~~~iP~gI~v~~~~~t~i~i~g~dKq~vg~~Aa~Ir~~r~pepYKGK   78 (95)
T d2qamg2           1 FTKKLQLVGVGYRAAV--KGNVINLSLGFSHPVDHQLPAGITAECPTQTEIVLKGADKQVIGQVAADLRAYRRPEPYKGK   78 (95)
T ss_dssp             CCCCCCBCSSSCCCCC--CTTEECCCSSSSSCCCEECCSSEECCCSSTTCCCCEESCHHHHHHHHHHHHTTTCCCTTSCC
T ss_pred             CeEEEEEEeEEEEEEE--cCCEEEEEEecceeceecCCCCcEEEecCCCEEEEEEcCHHHHHHHHHHHhccCCCCCcCCC
Confidence            6788999999999987  89999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceeecceEEEecCCccc
Q 046142          114 GIMCADEVIKKKVGKKK  130 (132)
Q Consensus       114 GI~~~~E~I~~K~gKk~  130 (132)
                      ||+|.||+|+||+|||+
T Consensus        79 GI~y~~E~i~~K~gKkK   95 (95)
T d2qamg2          79 GVRYADEVVRTKEAKKK   95 (95)
T ss_dssp             SBCCTTCCCCCCCCCCC
T ss_pred             cEeECCeEEEeccccCC
Confidence            99999999999999975

>d1rl6a2 d.141.1.1 (A:82-170) Ribosomal protein L6 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L6
superfamily: Ribosomal protein L6
family: Ribosomal protein L6
domain: Ribosomal protein L6
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=100.00  E-value=6.4e-44  Score=247.59  Aligned_cols=89  Identities=37%  Similarity=0.703  Sum_probs=86.8

Q ss_pred             eEEEEEEEEEEeeEEEeccCCEEEEEeccceeeeeeCCCCcEEEecCCeEEEEEecCHHHHHHHHHHhhccCCCCCCCCC
Q 046142           34 FLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCCCGLDKHRVHQFAASVRSRKPPDPFKGK  113 (132)
Q Consensus        34 f~~~L~lvGvGYra~i~~~g~~L~l~LGySH~i~~~IP~~V~v~v~~~t~I~l~GiDKq~VgqfAa~Ir~~r~pepYKGK  113 (132)
                      |+++|+|+||||||++  +|+.|.|+||||||+.+++|++|+++++++|.|+|+|+|||.||||||.||+||||||||||
T Consensus         1 f~k~L~lvGVGYra~~--~g~~L~l~LGySH~I~~~iP~~i~v~~~~~t~i~i~g~dKq~vg~~aa~Ir~~r~pepYKGK   78 (89)
T d1rl6a2           1 YEKALELVGVGYRASK--QGKKLVLSVGYSHPVEIEPEEGLEIEVPSQTKIIVKGADKQRVGELAANIRAVRPPEPYKGK   78 (89)
T ss_dssp             EEEEEEEESTTCEEEE--ETTEEEEESSSSSCEEECCCTTEEEEEEETTEEEEEESCHHHHHHHHHHHHTTSCCCTTTCC
T ss_pred             CeEEEEEEEEEEEEEe--cCCEEEEEEeecceEEEeCCCCcEEEecCCceeEEEEcCHHHHHHHHHHHhhcCCCCCcCCC
Confidence            7899999999999998  89999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceeecceEEEe
Q 046142          114 GIMCADEVIKK  124 (132)
Q Consensus       114 GI~~~~E~I~~  124 (132)
                      ||+|+||+|++
T Consensus        79 GI~y~~E~Irl   89 (89)
T d1rl6a2          79 GIRYEGELVRL   89 (89)
T ss_dssp             EEEETTCCCCC
T ss_pred             CEeECCEEEeC
Confidence            99999999975

>d2zjre1 d.141.1.1 (E:83-172) Ribosomal protein L6 {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L6
superfamily: Ribosomal protein L6
family: Ribosomal protein L6
domain: Ribosomal protein L6
species: Deinococcus radiodurans [TaxId: 1299]

Probab=100.00  E-value=8.8e-45  Score=252.39  Aligned_cols=90  Identities=33%  Similarity=0.569  Sum_probs=88.2

Q ss_pred             eEEEEEEEEEEeeEEEeccCCEEEEEeccceeeeeeCCCCcEEEecCCeEEEEEecCHHHHHHHHHHhhccCCCCCCCCC
Q 046142           34 FLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCCCGLDKHRVHQFAASVRSRKPPDPFKGK  113 (132)
Q Consensus        34 f~~~L~lvGvGYra~i~~~g~~L~l~LGySH~i~~~IP~~V~v~v~~~t~I~l~GiDKq~VgqfAa~Ir~~r~pepYKGK  113 (132)
                      |+++|+|+||||||++  +|+.|.|+||||||+.++||++|+++++++|.|+|+|+|||.||||||.||++|||||||||
T Consensus         1 f~k~L~lvGVGYra~~--~g~~L~l~LG~SH~i~~~iP~~I~v~~~~~t~i~i~g~dKq~vg~~aa~Ir~~r~pepYKGK   78 (90)
T d2zjre1           1 YTINLELRGVGFRAKL--TGKALEMNIGYSHPVIIEPPAGVTFAVPEPTRIDVSGIDKQLVGQVAANVRKVRKPDAYHGK   78 (90)
T ss_dssp             EEEEEECBSTTCCCCC--BTTBCBCCSSCSSCCBCCCCTTEEEECSSTTEEEEEESSHHHHHHHHHHHHHHTCCCTTTCC
T ss_pred             CEEEEEEEEEEEEEEe--cCCEEEEEEeeeeeeeeecCCCeEEEecCCCEEEEEEcCHHHHHHHHHHHHhhCCCCCccCC
Confidence            7899999999999997  89999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceeecceEEEec
Q 046142          114 GIMCADEVIKKK  125 (132)
Q Consensus       114 GI~~~~E~I~~K  125 (132)
                      ||+|.||+|+||
T Consensus        79 GI~y~~E~i~~K   90 (90)
T d2zjre1          79 GVRFVGEQIALK   90 (90)
T ss_dssp             BCCCSSCCCCCC
T ss_pred             CEeECCeEEEcC
Confidence            999999999987

>d2j01h2 d.141.1.1 (H:83-171) Ribosomal protein L6 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L6
superfamily: Ribosomal protein L6
family: Ribosomal protein L6
domain: Ribosomal protein L6
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=2.2e-44  Score=249.96  Aligned_cols=89  Identities=34%  Similarity=0.571  Sum_probs=86.1

Q ss_pred             eEEEEEEEEEEeeEEEeccCCEEEEEeccceeeeeeCCCCcEEEecCCeEEEEEecCHHHHHHHHHHhhccCCCCCCCCC
Q 046142           34 FLRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPSAVRIFCLKNNVVCCCGLDKHRVHQFAASVRSRKPPDPFKGK  113 (132)
Q Consensus        34 f~~~L~lvGvGYra~i~~~g~~L~l~LGySH~i~~~IP~~V~v~v~~~t~I~l~GiDKq~VgqfAa~Ir~~r~pepYKGK  113 (132)
                      |+++|+|+||||||++  +|+.|.|+||||||+.++||++|+++++++|.|+|+|+|||.||||||.||++|||||||||
T Consensus         1 f~k~LelvGVGYra~~--~g~~L~l~LGySH~I~~~iP~~I~v~~~~~t~i~i~g~dK~~vg~~aa~IR~~r~pepYKGK   78 (89)
T d2j01h2           1 YSKELLIKGIGYRARL--VGRALELTVGFSHPVVVEPPEGITFEVPEPTRVRVSGIDKQKVGQVAANIRAIRKPSAYHEK   78 (89)
T ss_dssp             CCCEECCCSSSCEECC--BTTBEEEECSSSSCEEECCCTTEEEECSSSSCEEEEESCSTTTTHHHHHHHTTSCSCSSSSS
T ss_pred             CeEEEEEEEEEEEEEE--eCCEEEEEEeccccccccCCCCeEEEecCCCEEEEEeCCHHHHHHHHHHHhccCCCCCcCCC
Confidence            6789999999999997  89999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceeecceEEEe
Q 046142          114 GIMCADEVIKK  124 (132)
Q Consensus       114 GI~~~~E~I~~  124 (132)
                      ||+|.||+|++
T Consensus        79 GI~y~~E~irL   89 (89)
T d2j01h2          79 GIYYAGEPVRL   89 (89)
T ss_dssp             SCCCSSCCCC-
T ss_pred             cEeECCEEEeC
Confidence            99999999975

>d1vqoe2 d.141.1.1 (E:80-172) Ribosomal protein L6 {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L6
superfamily: Ribosomal protein L6
family: Ribosomal protein L6
domain: Ribosomal protein L6
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=99.73  E-value=7.4e-18  Score=116.41  Aligned_cols=89  Identities=16%  Similarity=0.118  Sum_probs=81.5

Q ss_pred             eEEEEEEEEEEeeEEEeccCCEEEE--EeccceeeeeeCCCCcEEEecCCeEEEEEecCHHHHHHHHHHhhccCCCCCCC
Q 046142           34 FLRFLKIVGVGYKARAEAEGRLLYL--KLGYVHDVELTVPSAVRIFCLKNNVVCCCGLDKHRVHQFAASVRSRKPPDPFK  111 (132)
Q Consensus        34 f~~~L~lvGvGYra~i~~~g~~L~l--~LGySH~i~~~IP~~V~v~v~~~t~I~l~GiDKq~VgqfAa~Ir~~r~pepYK  111 (132)
                      |.++|+++..||++.++.+|+.+.+  +||+.+|+.+.||+|++|++.+ .+|+|+|+|+|.|+|+||+|++.-..   |
T Consensus         1 f~Ykmk~vyaHFPi~v~v~g~~v~I~NFlGEK~~R~~~i~~gv~v~v~~-deiiv~G~d~E~V~qtAA~Ieq~t~v---k   76 (93)
T d1vqoe2           1 WEYGMEVFYSHFPMQVNVEGDEVVIENFLGEKAPRRTTIHGDTDVEIDG-EELTVSGPDIEAVGQTAADIEQLTRI---N   76 (93)
T ss_dssp             EEEEEEEECSSSCCEEEEETTEEEEESGGGCSSCEEEECCTTCEEEEET-TEEEEEESCHHHHHHHHHHHHHTTCC---S
T ss_pred             CEEEEEEEEEeCCeEEEEcCCEEEEEeccCCceeEEEEecCCCeeEEcC-CEEEEEcCCHHHHHHHHHHHHHhhcc---C
Confidence            7899999999999999999999999  6999999999999999999987 58999999999999999999999776   5


Q ss_pred             CC--ceeecceEEEecC
Q 046142          112 GK--GIMCADEVIKKKV  126 (132)
Q Consensus       112 GK--GI~~~~E~I~~K~  126 (132)
                      +|  -+|.||-+|..|+
T Consensus        77 ~kD~R~FlDGIYv~eKp   93 (93)
T d1vqoe2          77 DKDVRVFQDGVYITRKP   93 (93)
T ss_dssp             SSCTTTCCCEEEEEECC
T ss_pred             CCCccEeecCEEEEecC
Confidence            55  4788999998874

>d1rl6a1 d.141.1.1 (A:7-81) Ribosomal protein L6 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L6
superfamily: Ribosomal protein L6
family: Ribosomal protein L6
domain: Ribosomal protein L6
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=81.55  E-value=0.59  Score=28.79  Aligned_cols=22  Identities=23%  Similarity=0.360  Sum_probs=17.7

Q ss_pred             eeCCCCcEEEecCCeEEEEEecC
Q 046142           68 LTVPSAVRIFCLKNNVVCCCGLD   90 (132)
Q Consensus        68 ~~IP~~V~v~v~~~t~I~l~GiD   90 (132)
                      +.||++|+|++.+ +.|+++|.-
T Consensus         2 I~IP~gV~v~i~~-~~i~vkGpk   23 (75)
T d1rl6a1           2 IEIPAGVTVTVNG-NTVTVKGPK   23 (75)
T ss_dssp             EECCTTCEEEEET-TEEEEEETT
T ss_pred             cCCCCCcEEEEEC-CEEEEEeCC
Confidence            4789999999877 588888864

>d2cqla1 d.141.1.1 (A:1-87) Ribosomal protein L6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L6
superfamily: Ribosomal protein L6
family: Ribosomal protein L6
domain: Ribosomal protein L6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.90  E-value=0.7  Score=28.98  Aligned_cols=26  Identities=19%  Similarity=0.174  Sum_probs=21.2

Q ss_pred             eeeeCCCCcEEEecCCeEEEEEecCHH
Q 046142           66 VELTVPSAVRIFCLKNNVVCCCGLDKH   92 (132)
Q Consensus        66 i~~~IP~~V~v~v~~~t~I~l~GiDKq   92 (132)
                      ..+.||+||+|++.+ +.|+++|.--+
T Consensus         8 ~~I~IP~gV~v~i~~-~~i~vkGpkG~   33 (87)
T d2cqla1           8 QTVDIPENVDITLKG-RTVIVKGPRGT   33 (87)
T ss_dssp             EEECCCSSCEEEEET-TEEEEEETTEE
T ss_pred             CcEECCCCCEEEEeC-CEEEEEcCCcE
Confidence            357899999999988 47999987643