Citrus Sinensis ID: 046194
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 934 | 2.2.26 [Sep-21-2011] | |||||||
| Q9FIB2 | 995 | Putative pentatricopeptid | yes | no | 0.992 | 0.931 | 0.634 | 0.0 | |
| Q9SMZ2 | 990 | Pentatricopeptide repeat- | no | no | 0.972 | 0.917 | 0.353 | 1e-159 | |
| Q9SVP7 | 1064 | Pentatricopeptide repeat- | no | no | 0.985 | 0.864 | 0.328 | 1e-158 | |
| Q9ZUW3 | 868 | Pentatricopeptide repeat- | no | no | 0.832 | 0.896 | 0.369 | 1e-150 | |
| Q5G1T1 | 850 | Pentatricopeptide repeat- | no | no | 0.817 | 0.898 | 0.378 | 1e-145 | |
| Q0WSH6 | 684 | Pentatricopeptide repeat- | no | no | 0.715 | 0.976 | 0.400 | 1e-143 | |
| Q9M1V3 | 960 | Pentatricopeptide repeat- | no | no | 0.914 | 0.889 | 0.331 | 1e-142 | |
| Q3E6Q1 | 809 | Pentatricopeptide repeat- | no | no | 0.764 | 0.882 | 0.372 | 1e-142 | |
| Q9SHZ8 | 786 | Pentatricopeptide repeat- | no | no | 0.740 | 0.880 | 0.364 | 1e-140 | |
| Q9SY02 | 781 | Pentatricopeptide repeat- | no | no | 0.762 | 0.911 | 0.368 | 1e-140 |
| >sp|Q9FIB2|PP373_ARATH Putative pentatricopeptide repeat-containing protein At5g09950 OS=Arabidopsis thaliana GN=PCMP-H35 PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 1269 bits (3285), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 622/980 (63%), Positives = 750/980 (76%), Gaps = 53/980 (5%)
Query: 4 AKLFHLQILKHGFAYDVFLCNTLINVYVRVGDLASASKLFDEMPDRNSVSWACIVSGYTH 63
A+ FH ++ K+ DV+LCN LIN Y+ GD SA K+FDEMP RN VSWACIVSGY+
Sbjct: 20 ARFFHSRLYKNRLDKDVYLCNNLINAYLETGDSVSARKVFDEMPLRNCVSWACIVSGYSR 79
Query: 64 KGMSNEACKMFKEMVRAGFLLNRYALGSVLRACQECGPSGFKFGMQVHCLVLKSNQTFDG 123
G EA ++MV+ G N+YA SVLRACQE G G FG Q+H L+ K + D
Sbjct: 80 NGEHKEALVFLRDMVKEGIFSNQYAFVSVLRACQEIGSVGILFGRQIHGLMFKLSYAVDA 139
Query: 124 LVSNVLIAMYGSCLESTDCARRIFEEIETRDLISWNSIISVYSQRGDTISVFKLFSRMQR 183
+VSNVLI+MY C+ S A F +IE ++ +SWNSIISVYSQ GD S F++FS MQ
Sbjct: 140 VVSNVLISMYWKCIGSVGYALCAFGDIEVKNSVSWNSIISVYSQAGDQRSAFRIFSSMQY 199
Query: 184 EGFRYSLKPNEYTFGSLITAAYSSVLSGSYLLQQILAMVKKAGLLSDLYVGSALVSGFAR 243
+G R P EYTFGSL+T A S LL+QI+ ++K+GLL+DL+VGS LVS FA+
Sbjct: 200 DGSR----PTEYTFGSLVTTACSLTEPDVRLLEQIMCTIQKSGLLTDLFVGSGLVSAFAK 255
Query: 244 LGNFYYARKIFEQMIQKNVVSMNGLMEGR------------------------------- 272
G+ YARK+F QM +N V++NGLM G
Sbjct: 256 SGSLSYARKVFNQMETRNAVTLNGLMVGLVRQKWGEEATKLFMDMNSMIDVSPESYVILL 315
Query: 273 --------------RKGKEVHGYLIRSGLFD-MVAVGNGLVNMYAKCGTIDDSRSVFRFM 317
+KG+EVHG++I +GL D MV +GNGLVNMYAKCG+I D+R VF FM
Sbjct: 316 SSFPEYSLAEEVGLKKGREVHGHVITTGLVDFMVGIGNGLVNMYAKCGSIADARRVFYFM 375
Query: 318 IGKDSVSWNTMISGLDQNGCYEEAIMNFCAMRRDGLMSSNFSLISTLSSCASLGWIMLGQ 377
KDSVSWN+MI+GLDQNGC+ EA+ + +MRR ++ +F+LIS+LSSCASL W LGQ
Sbjct: 376 TDKDSVSWNSMITGLDQNGCFIEAVERYKSMRRHDILPGSFTLISSLSSCASLKWAKLGQ 435
Query: 378 QIHGEGLKLGLDSDVSVSNALLSLYADAGYLSRCLKVFFLMPEHDQVSWNSVIGAFADSE 437
QIHGE LKLG+D +VSVSNAL++LYA+ GYL+ C K+F MPEHDQVSWNS+IGA A SE
Sbjct: 436 QIHGESLKLGIDLNVSVSNALMTLYAETGYLNECRKIFSSMPEHDQVSWNSIIGALARSE 495
Query: 438 ALVSEAVKYYLDMRRAGWSPNGVTFINILAAASSFSMGKLGHQVHAQVIKYNVANETTIE 497
+ EAV +L+ +RAG N +TF ++L+A SS S G+LG Q+H +K N+A+E T E
Sbjct: 496 RSLPEAVVCFLNAQRAGQKLNRITFSSVLSAVSSLSFGELGKQIHGLALKNNIADEATTE 555
Query: 498 NALLSCYGKCGEMDDCEKIFARMSERRDEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQ 557
NAL++CYGKCGEMD CEKIF+RM+ERRD V+WNSMISGYIHNELL KA++LVWFM+Q GQ
Sbjct: 556 NALIACYGKCGEMDGCEKIFSRMAERRDNVTWNSMISGYIHNELLAKALDLVWFMLQTGQ 615
Query: 558 RLDHFTFATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASR 617
RLD F +ATVLSA ASVATLERGMEVHAC VRACLE DVV+GSALVDMYSKCGR+DYA R
Sbjct: 616 RLDSFMYATVLSAFASVATLERGMEVHACSVRACLESDVVVGSALVDMYSKCGRLDYALR 675
Query: 618 FFDLMPVRNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPL-PDHVTFVGVLSACSHAG 676
FF+ MPVRN YSWNSMISGYARHG G++AL LF MKLDG PDHVTFVGVLSACSHAG
Sbjct: 676 FFNTMPVRNSYSWNSMISGYARHGQGEEALKLFETMKLDGQTPPDHVTFVGVLSACSHAG 735
Query: 677 LVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKMPITPNSLIWRTV 736
L++EGFKHF+SMS YGL P++E FSCM D+LGRAGELDK+E+FI KMP+ PN LIWRTV
Sbjct: 736 LLEEGFKHFESMSDSYGLAPRIEHFSCMADVLGRAGELDKLEDFIEKMPMKPNVLIWRTV 795
Query: 737 LGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMKEAE 796
LGACCRAN RK ELG+KAA MLF++EP+NAVNYVLL NMYA+GG+WED+ KARK MK+A+
Sbjct: 796 LGACCRANGRKAELGKKAAEMLFQLEPENAVNYVLLGNMYAAGGRWEDLVKARKKMKDAD 855
Query: 797 VKKEAGCSWVTMKDGVHVFVAGDESHPEKDLIYEKLKELNQKMRDAGYVPQTKFALFDLE 856
VKKEAG SWVTMKDGVH+FVAGD+SHP+ D+IY+KLKELN+KMRDAGYVPQT FAL+DLE
Sbjct: 856 VKKEAGYSWVTMKDGVHMFVAGDKSHPDADVIYKKLKELNRKMRDAGYVPQTGFALYDLE 915
Query: 857 PESKEDLVSYHSEKIAVAFVLT--RNSKLPIRIMKNLRVCGDCHSAFKFISKIVGREIVL 914
E+KE+++SYHSEK+AVAFVL R+S LPIRIMKNLRVCGDCHSAFK+ISKI GR+I+L
Sbjct: 916 QENKEEILSYHSEKLAVAFVLAAQRSSTLPIRIMKNLRVCGDCHSAFKYISKIEGRQIIL 975
Query: 915 RDSNRFHHFNDGKCSCGDYW 934
RDSNRFHHF DG CSC D+W
Sbjct: 976 RDSNRFHHFQDGACSCSDFW 995
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SMZ2|PP347_ARATH Pentatricopeptide repeat-containing protein At4g33170 OS=Arabidopsis thaliana GN=PCMP-H53 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 561 bits (1447), Expect = e-159, Method: Compositional matrix adjust.
Identities = 337/954 (35%), Positives = 517/954 (54%), Gaps = 46/954 (4%)
Query: 5 KLFHLQILKHGFAYDVFLCNTLINVYVRVGDLASASKLFDEMPDRNSVSWACIVSGYTHK 64
K H +IL + FL N LI++Y + G L A ++FD+MPDR+ VSW I++ Y
Sbjct: 59 KCTHARILTFEENPERFLINNLISMYSKCGSLTYARRVFDKMPDRDLVSWNSILAAYAQS 118
Query: 65 GMS-----NEACKMFKEMVRAGFLLNRYALGSVLRACQECGPSGFKFGMQ-VHCLVLKSN 118
+A +F+ + + +R L +L+ C SG+ + + H K
Sbjct: 119 SECVVENIQQAFLLFRILRQDVVYTSRMTLSPMLKLCLH---SGYVWASESFHGYACKIG 175
Query: 119 QTFDGLVSNVLIAMY---GSCLESTDCARRIFEEIETRDLISWNSIISVYSQRGDTISVF 175
D V+ L+ +Y G E + +FEE+ RD++ WN ++ Y + G
Sbjct: 176 LDGDEFVAGALVNIYLKFGKVKE----GKVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAI 231
Query: 176 KLFSRMQREGFRYSLKPNEYTFGSLITAAYSSVLSGSYLLQQILAMVKKAGLLSDLYVGS 235
L S G L PNE T L + +G + A A +S++ +
Sbjct: 232 DLSSAFHSSG----LNPNEITLRLLARISGDDSDAGQV---KSFANGNDASSVSEIIFRN 284
Query: 236 ALVSGFARLGNFYYARKIFEQMIQKNV----VSMNGLMEGRRK------GKEVHGYLIRS 285
+S + G + K F M++ +V V+ ++ K G++VH ++
Sbjct: 285 KGLSEYLHSGQYSALLKCFADMVESDVECDQVTFILMLATAVKVDSLALGQQVHCMALKL 344
Query: 286 GLFDMVAVGNGLVNMYAKCGTIDDSRSVFRFMIGKDSVSWNTMISGLDQNGCYEEAIMNF 345
GL M+ V N L+NMY K +R+VF M +D +SWN++I+G+ QNG EA+ F
Sbjct: 345 GLDLMLTVSNSLINMYCKLRKFGFARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCLF 404
Query: 346 CAMRRDGLMSSNFSLISTLSSCASLG-WIMLGQQIHGEGLKLGLDSDVSVSNALLSLYAD 404
+ R GL +++ S L + +SL + L +Q+H +K+ SD VS AL+ Y+
Sbjct: 405 MQLLRCGLKPDQYTMTSVLKAASSLPEGLSLSKQVHVHAIKINNVSDSFVSTALIDAYSR 464
Query: 405 AGYLSRCLK---VFFLMPEHDQVSWNSVIGAFADSEALVSEAVKYYLDMRRAGWSPNGVT 461
+RC+K + F D V+WN+++ + S + +K + M + G + T
Sbjct: 465 ----NRCMKEAEILFERHNFDLVAWNAMMAGYTQSHD-GHKTLKLFALMHKQGERSDDFT 519
Query: 462 FINILAAASSFSMGKLGHQVHAQVIKYNVANETTIENALLSCYGKCGEMDDCEKIFARMS 521
+ G QVHA IK + + + +L Y KCG+M + F +
Sbjct: 520 LATVFKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIP 579
Query: 522 ERRDEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVATLERGM 581
D+V+W +MISG I N +A ++ M G D FT AT+ A + + LE+G
Sbjct: 580 -VPDDVAWTTMISGCIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGR 638
Query: 582 EVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPVRNVYSWNSMISGYARHG 641
++HA ++ D +G++LVDMY+KCG ID A F + + N+ +WN+M+ G A+HG
Sbjct: 639 QIHANALKLNCTNDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHG 698
Query: 642 HGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQF 701
G + L LF QMK G PD VTF+GVLSACSH+GLV E +KH +SM YG+ P++E +
Sbjct: 699 EGKETLQLFKQMKSLGIKPDKVTFIGVLSACSHSGLVSEAYKHMRSMHGDYGIKPEIEHY 758
Query: 702 SCMVDLLGRAGELDKIEEFINKMPITPNSLIWRTVLGACCRANCRKTELGRKAANMLFEM 761
SC+ D LGRAG + + E I M + ++ ++RT+L AC TE G++ A L E+
Sbjct: 759 SCLADALGRAGLVKQAENLIESMSMEASASMYRTLLAACRVQG--DTETGKRVATKLLEL 816
Query: 762 EPQNAVNYVLLANMYASGGKWEDVAKARKAMKEAEVKKEAGCSWVTMKDGVHVFVAGDES 821
EP ++ YVLL+NMYA+ KW+++ AR MK +VKK+ G SW+ +K+ +H+FV D S
Sbjct: 817 EPLDSSAYVLLSNMYAAASKWDEMKLARTMMKGHKVKKDPGFSWIEVKNKIHIFVVDDRS 876
Query: 822 HPEKDLIYEKLKELNQKMRDAGYVPQTKFALFDLEPESKEDLVSYHSEKIAVAF-VLTRN 880
+ + +LIY K+K++ + ++ GYVP+T F L D+E E KE + YHSEK+AVAF +L+
Sbjct: 877 NRQTELIYRKVKDMIRDIKQEGYVPETDFTLVDVEEEEKERALYYHSEKLAVAFGLLSTP 936
Query: 881 SKLPIRIMKNLRVCGDCHSAFKFISKIVGREIVLRDSNRFHHFNDGKCSCGDYW 934
PIR++KNLRVCGDCH+A K+I+K+ REIVLRD+NRFH F DG CSCGDYW
Sbjct: 937 PSTPIRVIKNLRVCGDCHNAMKYIAKVYNREIVLRDANRFHRFKDGICSCGDYW 990
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SVP7|PP307_ARATH Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana GN=PCMP-H42 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 558 bits (1439), Expect = e-158, Method: Compositional matrix adjust.
Identities = 320/974 (32%), Positives = 512/974 (52%), Gaps = 54/974 (5%)
Query: 3 DAKLFHLQILKHGFAYDVFLCNTLINVYVRVGDLASASKLFDEMPDRNSVSWACIVSGYT 62
+ + H QILK G + L L + Y+ GDL A K+FDEMP+R +W ++
Sbjct: 103 EGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGAFKVFDEMPERTIFTWNKMIKELA 162
Query: 63 HKGMSNEACKMFKEMVRAGFLLNRYALGSVLRACQECGPSGFKFGMQVHCLVLKSNQTFD 122
+ + E +F MV N VL AC+ G F Q+H +L
Sbjct: 163 SRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACR-GGSVAFDVVEQIHARILYQGLRDS 221
Query: 123 GLVSNVLIAMYGSCLESTDCARRIFEEIETRDLISWNSIISVYSQRGDTISVFKLFSRMQ 182
+V N LI +Y S D ARR+F+ + +D SW ++IS S+ +LF M
Sbjct: 222 TVVCNPLIDLY-SRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDM- 279
Query: 183 REGFRYSLKPNEYTFGSLITAAYSSVLSGSYLLQQILAMVKKAGLLSDLYVGSALVSGFA 242
+ + P Y F S+++A + + +Q+ +V K G SD YV +ALVS +
Sbjct: 280 ---YVLGIMPTPYAFSSVLSACKK--IESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYF 334
Query: 243 RLGNFYYARKIFEQMIQKNVVSMNGLMEG--------------RR--------------- 273
LGN A IF M Q++ V+ N L+ G +R
Sbjct: 335 HLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLAS 394
Query: 274 ------------KGKEVHGYLIRSGLFDMVAVGNGLVNMYAKCGTIDDSRSVFRFMIGKD 321
+G+++H Y + G + L+N+YAKC I+ + F ++
Sbjct: 395 LVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVEN 454
Query: 322 SVSWNTMISGLDQNGCYEEAIMNFCAMRRDGLMSSNFSLISTLSSCASLGWIMLGQQIHG 381
V WN M+ + F M+ + ++ + ++ S L +C LG + LG+QIH
Sbjct: 455 VVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHS 514
Query: 382 EGLKLGLDSDVSVSNALLSLYADAGYLSRCLKVFFLMPEHDQVSWNSVIGAFADSEALVS 441
+ +K + V + L+ +YA G L + D VSW ++I +
Sbjct: 515 QIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYN-FDD 573
Query: 442 EAVKYYLDMRRAGWSPNGVTFINILAAASSFSMGKLGHQVHAQVIKYNVANETTIENALL 501
+A+ + M G + V N ++A + K G Q+HAQ +++ +NAL+
Sbjct: 574 KALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALV 633
Query: 502 SCYGKCGEMDDCEKIFARMSERRDEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDH 561
+ Y +CG++++ F + +E D ++WN+++SG+ + +A+ + M + G ++
Sbjct: 634 TLYSRCGKIEESYLAFEQ-TEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNN 692
Query: 562 FTFATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDL 621
FTF + + A + A +++G +VHA + + + + +AL+ MY+KCG I A + F
Sbjct: 693 FTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLE 752
Query: 622 MPVRNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEG 681
+ +N SWN++I+ Y++HG G +AL F QM P+HVT VGVLSACSH GLVD+G
Sbjct: 753 VSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKG 812
Query: 682 FKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKMPITPNSLIWRTVLGACC 741
+F+SM+ YGL P+ E + C+VD+L RAG L + +EFI +MPI P++L+WRT+L AC
Sbjct: 813 IAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACV 872
Query: 742 RANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMKEAEVKKEA 801
+ E+G AA+ L E+EP+++ YVLL+N+YA KW+ R+ MKE VKKE
Sbjct: 873 VH--KNMEIGEFAAHHLLELEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEKGVKKEP 930
Query: 802 GCSWVTMKDGVHVFVAGDESHPEKDLIYEKLKELNQKMRDAGYVPQTKFALFDLEPESKE 861
G SW+ +K+ +H F GD++HP D I+E ++L ++ + GYV L +L+ E K+
Sbjct: 931 GQSWIEVKNSIHSFYVGDQNHPLADEIHEYFQDLTKRASEIGYVQDCFSLLNELQHEQKD 990
Query: 862 DLVSYHSEKIAVAF-VLTRNSKLPIRIMKNLRVCGDCHSAFKFISKIVGREIVLRDSNRF 920
++ HSEK+A++F +L+ + +PI +MKNLRVC DCH+ KF+SK+ REI++RD+ RF
Sbjct: 991 PIIFIHSEKLAISFGLLSLPATVPINVMKNLRVCNDCHAWIKFVSKVSNREIIVRDAYRF 1050
Query: 921 HHFNDGKCSCGDYW 934
HHF G CSC DYW
Sbjct: 1051 HHFEGGACSCKDYW 1064
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9ZUW3|PP172_ARATH Pentatricopeptide repeat-containing protein At2g27610 OS=Arabidopsis thaliana GN=PCMP-H60 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 534 bits (1376), Expect = e-150, Method: Compositional matrix adjust.
Identities = 309/837 (36%), Positives = 472/837 (56%), Gaps = 59/837 (7%)
Query: 143 ARRIFEEIETRDLISWNSIISVYSQRGDTISVFKLFSRMQREGFRYSLKPNEYTFGSLIT 202
A +F++ RD S+ S++ +S+ G T +LF + R G F S++
Sbjct: 46 AHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLGMEMDCS----IFSSVLK 101
Query: 203 AAYSSVLSGSYLLQQILAMVKKAGLLSDLYVGSALVSGFARLGNFYYARKIFEQMIQKNV 262
S+ L +Q+ K G L D+ VG++LV + + NF RK+F++M ++NV
Sbjct: 102 V--SATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNV 159
Query: 263 VSMNGLMEGRRK-----------------------------------------GKEVHGY 281
V+ L+ G + G +VH
Sbjct: 160 VTWTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTV 219
Query: 282 LIRSGLFDMVAVGNGLVNMYAKCGTIDDSRSVFRFMIGKDSVSWNTMISGLDQNGCYEEA 341
++++GL + V N L+N+Y KCG + +R +F K V+WN+MISG NG EA
Sbjct: 220 VVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEA 279
Query: 342 IMNFCAMRRDGLMSSNFSLISTLSSCASLGWIMLGQQIHGEGLKLGLDSDVSVSNALLSL 401
+ F +MR + + S S S + CA+L + +Q+H +K G D ++ AL+
Sbjct: 280 LGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVA 339
Query: 402 YADAGYLSRCLKVFFLMP-EHDQVSWNSVIGAFADSEALVSEAVKYYLDMRRAGWSPNGV 460
Y+ + L++F + + VSW ++I F ++ EAV + +M+R G PN
Sbjct: 340 YSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDG-KEEAVDLFSEMKRKGVRPNEF 398
Query: 461 TFINILAAASSFSMGKLGHQVHAQVIKYNVANETTIENALLSCYGKCGEMDDCEKIFARM 520
T+ IL A S +VHAQV+K N +T+ ALL Y K G++++ K+F+ +
Sbjct: 399 TYSVILTALPVIS----PSEVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGI 454
Query: 521 SERRDEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASV-ATLER 579
++ D V+W++M++GY A+ + + + G + + FTF+++L+ CA+ A++ +
Sbjct: 455 DDK-DIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQ 513
Query: 580 GMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPVRNVYSWNSMISGYAR 639
G + H +++ L+ + + SAL+ MY+K G I+ A F +++ SWNSMISGYA+
Sbjct: 514 GKQFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQ 573
Query: 640 HGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLE 699
HG KAL +F +MK D VTF+GV +AC+HAGLV+EG K+F M + + P E
Sbjct: 574 HGQAMKALDVFKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKE 633
Query: 700 QFSCMVDLLGRAGELDKIEEFINKMPITPNSLIWRTVLGACCRANCRKTELGRKAANMLF 759
SCMVDL RAG+L+K + I MP S IWRT+L A CR + +KTELGR AA +
Sbjct: 634 HNSCMVDLYSRAGQLEKAMKVIENMPNPAGSTIWRTILAA-CRVH-KKTELGRLAAEKII 691
Query: 760 EMEPQNAVNYVLLANMYASGGKWEDVAKARKAMKEAEVKKEAGCSWVTMKDGVHVFVAGD 819
M+P+++ YVLL+NMYA G W++ AK RK M E VKKE G SW+ +K+ + F+AGD
Sbjct: 692 AMKPEDSAAYVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWIEVKNKTYSFLAGD 751
Query: 820 ESHPEKDLIYEKLKELNQKMRDAGYVPQTKFALFDLEPESKEDLVSYHSEKIAVAFVLTR 879
SHP KD IY KL++L+ +++D GY P T + L D++ E KE +++ HSE++A+AF L
Sbjct: 752 RSHPLKDQIYMKLEDLSTRLKDLGYEPDTSYVLQDIDDEHKEAVLAQHSERLAIAFGLIA 811
Query: 880 NSK-LPIRIMKNLRVCGDCHSAFKFISKIVGREIVLRDSNRFHHF-NDGKCSCGDYW 934
K P+ I+KNLRVCGDCH K I+KI REIV+RDSNRFHHF +DG CSCGD+W
Sbjct: 812 TPKGSPLLIIKNLRVCGDCHLVIKLIAKIEEREIVVRDSNRFHHFSSDGVCSCGDFW 868
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q5G1T1|PP272_ARATH Pentatricopeptide repeat-containing protein At3g49170, chloroplastic OS=Arabidopsis thaliana GN=EMB2261 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 515 bits (1326), Expect = e-145, Method: Compositional matrix adjust.
Identities = 312/824 (37%), Positives = 464/824 (56%), Gaps = 60/824 (7%)
Query: 131 AMYGSCLESTDC-------ARRIFEEIETRDLISWNSIISVYSQRGDTISVFKLFSRMQR 183
++ SC+ + D AR I +IE D + +NS+IS+YS+ GD+ +F M+R
Sbjct: 67 SLLKSCIRARDFRLGKLVHARLIEFDIEP-DSVLYNSLISLYSKSGDSAKAEDVFETMRR 125
Query: 184 EGFRYSLKPNEYTFGSLITAAYSSVLSGSYLLQQILAMVK--KAGLLSDLYVGSALVSGF 241
G R + S + A Y + L I V+ + GL+ + Y +A++
Sbjct: 126 FGKR------DVVSWSAMMACYGN---NGRELDAIKVFVEFLELGLVPNDYCYTAVIRAC 176
Query: 242 ARLGNFYYARKIFEQMIQKNVVSMNGLMEGRRKGKEVHGYLIRSGLFDM-VAVGNGLVNM 300
+ + V + G+ G+L+++G F+ V VG L++M
Sbjct: 177 S----------------NSDFVGV---------GRVTLGFLMKTGHFESDVCVGCSLIDM 211
Query: 301 YAKC-GTIDDSRSVFRFMIGKDSVSWNTMISGLDQNGCYEEAIMNFCAMRRDGLMSSNFS 359
+ K + +++ VF M + V+W MI+ Q G EAI F M G S F+
Sbjct: 212 FVKGENSFENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFT 271
Query: 360 LISTLSSCASLGWIMLGQQIHGEGLKLGLDSDVSVSNALLSLYADA---GYLSRCLKVFF 416
L S S+CA L + LG+Q+H ++ GL DV S L+ +YA G + C KVF
Sbjct: 272 LSSVFSACAELENLSLGKQLHSWAIRSGLVDDVECS--LVDMYAKCSADGSVDDCRKVFD 329
Query: 417 LMPEHDQVSWNSVIGAFADSEALVSEAVKYYLDMRRAGW-SPNGVTFINILAAASSFSMG 475
M +H +SW ++I + + L +EA+ + +M G PN TF + A + S
Sbjct: 330 RMEDHSVMSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDP 389
Query: 476 KLGHQVHAQVIKYNVANETTIENALLSCYGKCGEMDDCEKIFARMSERRDEVSWNSMISG 535
++G QV Q K +A+ +++ N+++S + K M+D ++ F +SE+ + VS+N+ + G
Sbjct: 390 RVGKQVLGQAFKRGLASNSSVANSVISMFVKSDRMEDAQRAFESLSEK-NLVSYNTFLDG 448
Query: 536 YIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVATLERGMEVHACGVRACLEFD 595
N +A L+ + +R + FTFA++LS A+V ++ +G ++H+ V+ L +
Sbjct: 449 TCRNLNFEQAFKLLSEITERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCN 508
Query: 596 VVIGSALVDMYSKCGRIDYASRFFDLMPVRNVYSWNSMISGYARHGHGDKALTLFSQMKL 655
+ +AL+ MYSKCG ID ASR F+ M RNV SW SMI+G+A+HG + L F+QM
Sbjct: 509 QPVCNALISMYSKCGSIDTASRVFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIE 568
Query: 656 DGPLPDHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELD 715
+G P+ VT+V +LSACSH GLV EG++HF SM + + + P++E ++CMVDLL RAG L
Sbjct: 569 EGVKPNEVTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLT 628
Query: 716 KIEEFINKMPITPNSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANM 775
EFIN MP + L+WRT LGA CR + TELG+ AA + E++P Y+ L+N+
Sbjct: 629 DAFEFINTMPFQADVLVWRTFLGA-CRVH-SNTELGKLAARKILELDPNEPAAYIQLSNI 686
Query: 776 YASGGKWEDVAKARKAMKEAEVKKEAGCSWVTMKDGVHVFVAGDESHPEKDLIYEKLKEL 835
YA GKWE+ + R+ MKE + KE GCSW+ + D +H F GD +HP IY++L L
Sbjct: 687 YACAGKWEESTEMRRKMKERNLVKEGGCSWIEVGDKIHKFYVGDTAHPNAHQIYDELDRL 746
Query: 836 NQKMRDAGYVPQTKFALFDLEPESKED----LVSYHSEKIAVAFVLTRNSK-LPIRIMKN 890
+++ GYVP T L LE E+ E L+ HSEKIAVAF L SK P+R+ KN
Sbjct: 747 ITEIKRCGYVPDTDLVLHKLEEENDEAEKERLLYQHSEKIAVAFGLISTSKSRPVRVFKN 806
Query: 891 LRVCGDCHSAFKFISKIVGREIVLRDSNRFHHFNDGKCSCGDYW 934
LRVCGDCH+A K+IS + GREIVLRD NRFHHF DGKCSC DYW
Sbjct: 807 LRVCGDCHNAMKYISTVSGREIVLRDLNRFHHFKDGKCSCNDYW 850
|
May play a role in embryogenesis. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WSH6|PP312_ARATH Pentatricopeptide repeat-containing protein At4g14850 OS=Arabidopsis thaliana GN=LOI1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 508 bits (1309), Expect = e-143, Method: Compositional matrix adjust.
Identities = 274/684 (40%), Positives = 403/684 (58%), Gaps = 16/684 (2%)
Query: 257 MIQKNVVSMNGLMEGRRKGKEVHGYLIRSGLFDMVA---VGNGLVNMYAKCGTIDDSRSV 313
++ KN +S + + R G+ VH ++++ D + N L+NMY+K + +R V
Sbjct: 11 LLLKNAISASSM----RLGRVVHARIVKT--LDSPPPPFLANYLINMYSKLDHPESARLV 64
Query: 314 FRFMIGKDSVSWNTMISGLDQNGCYEEAIMNFCAMRRDGLMSSNFSLISTLSSCASLGWI 373
R ++ VSW ++ISGL QNG + A++ F MRR+G++ ++F+ + ASL
Sbjct: 65 LRLTPARNVVSWTSLISGLAQNGHFSTALVEFFEMRREGVVPNDFTFPCAFKAVASLRLP 124
Query: 374 MLGQQIHGEGLKLGLDSDVSVSNALLSLYADAGYLSRCLKVFFLMPEHDQVSWNSVIGAF 433
+ G+QIH +K G DV V + +Y K+F +PE + +WN+ I
Sbjct: 125 VTGKQIHALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIPERNLETWNAFISN- 183
Query: 434 ADSEALVSEAVKYYLDMRRAGWSPNGVTFINILAAASSFSMGKLGHQVHAQVIKYNVANE 493
+ ++ EA++ +++ RR PN +TF L A S + LG Q+H V++ +
Sbjct: 184 SVTDGRPREAIEAFIEFRRIDGHPNSITFCAFLNACSDWLHLNLGMQLHGLVLRSGFDTD 243
Query: 494 TTIENALLSCYGKCGEMDDCEKIFARMSERRDEVSWNSMISGYIHNELLPKAMNLVWFMM 553
++ N L+ YGKC ++ E IF M + + VSW S+++ Y+ N KA L
Sbjct: 244 VSVCNGLIDFYGKCKQIRSSEIIFTEMGTK-NAVSWCSLVAAYVQNHEDEKASVLYLRSR 302
Query: 554 QRGQRLDHFTFATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRID 613
+ F ++VLSACA +A LE G +HA V+AC+E + +GSALVDMY KCG I+
Sbjct: 303 KDIVETSDFMISSVLSACAGMAGLELGRSIHAHAVKACVERTIFVGSALVDMYGKCGCIE 362
Query: 614 YASRFFDLMPVRNVYSWNSMISGYARHGHGDKALTLFSQMKLDG--PLPDHVTFVGVLSA 671
+ + FD MP +N+ + NS+I GYA G D AL LF +M G P P+++TFV +LSA
Sbjct: 363 DSEQAFDEMPEKNLVTRNSLIGGYAHQGQVDMALALFEEMAPRGCGPTPNYMTFVSLLSA 422
Query: 672 CSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKMPITPNSL 731
CS AG V+ G K F SM YG+ P E +SC+VD+LGRAG +++ EFI KMPI P
Sbjct: 423 CSRAGAVENGMKIFDSMRSTYGIEPGAEHYSCIVDMLGRAGMVERAYEFIKKMPIQPTIS 482
Query: 732 IWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKA 791
+W + AC K +LG AA LF+++P+++ N+VLL+N +A+ G+W + R+
Sbjct: 483 VWGALQNACRMHG--KPQLGLLAAENLFKLDPKDSGNHVLLSNTFAAAGRWAEANTVREE 540
Query: 792 MKEAEVKKEAGCSWVTMKDGVHVFVAGDESHPEKDLIYEKLKELNQKMRDAGYVPQTKFA 851
+K +KK AG SW+T+K+ VH F A D SH I L +L +M AGY P K +
Sbjct: 541 LKGVGIKKGAGYSWITVKNQVHAFQAKDRSHILNKEIQTTLAKLRNEMEAAGYKPDLKLS 600
Query: 852 LFDLEPESKEDLVSYHSEKIAVAF-VLTRNSKLPIRIMKNLRVCGDCHSAFKFISKIVGR 910
L+DLE E K VS+HSEK+A+AF +L+ +PIRI KNLR+CGDCHS FKF+S V R
Sbjct: 601 LYDLEEEEKAAEVSHHSEKLALAFGLLSLPLSVPIRITKNLRICGDCHSFFKFVSGSVKR 660
Query: 911 EIVLRDSNRFHHFNDGKCSCGDYW 934
EI++RD+NRFH F DG CSC DYW
Sbjct: 661 EIIVRDNNRFHRFKDGICSCKDYW 684
|
Acts as a regulatory factor of isoprenoid biosynthesis. Could bind RNA. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M1V3|PP296_ARATH Pentatricopeptide repeat-containing protein At3g63370 OS=Arabidopsis thaliana GN=PCMP-H83 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 506 bits (1304), Expect = e-142, Method: Compositional matrix adjust.
Identities = 311/937 (33%), Positives = 485/937 (51%), Gaps = 83/937 (8%)
Query: 5 KLFHLQILKHGFAYDV-FLCNTLINVYVRVGDLASASKLFDEMPDRNSVSWACIVSGYTH 63
+ H +I K ++++ FL L+ +Y + G L A K+FDEMPDR + +W ++ Y
Sbjct: 100 RQLHSRIFKTFPSFELDFLAGKLVFMYGKCGSLDDAEKVFDEMPDRTAFAWNTMIGAYVS 159
Query: 64 KGMSNEACKMFKEMVRAGFLLNRYALGSVLRACQECGPSGFKFGMQVHCLVLKSNQTFDG 123
G A ++ M G L + ++L+AC + + G ++H L++K G
Sbjct: 160 NGEPASALALYWNMRVEGVPLGLSSFPALLKACAKL--RDIRSGSELHSLLVKLGYHSTG 217
Query: 124 LVSNVLIAMYGSCLESTDCARRIFEEIETR-DLISWNSIISVYSQRGDTISVFKLFSRMQ 182
+ N L++MY + ARR+F+ + + D + WNSI+S YS G ++ +LF M
Sbjct: 218 FIVNALVSMYAKN-DDLSAARRLFDGFQEKGDAVLWNSILSSYSTSGKSLETLELFREMH 276
Query: 183 REGFRYSLKPNEYTFGSLITAAYSSVLSGSYLLQQILAMVKKAGLLSDLYVGSALVSGFA 242
G PN YT +VS
Sbjct: 277 MTG----PAPNSYT----------------------------------------IVSALT 292
Query: 243 RLGNFYYARKIFEQMIQKNVVSMNGLMEGRRKGKEVHGYLIRSGLFDM-VAVGNGLVNMY 301
F YA+ GKE+H +++S + V N L+ MY
Sbjct: 293 ACDGFSYAKL----------------------GKEIHASVLKSSTHSSELYVCNALIAMY 330
Query: 302 AKCGTIDDSRSVFRFMIGKDSVSWNTMISGLDQNGCYEEAIMNFCAMRRDGLMSSNFSLI 361
+CG + + + R M D V+WN++I G QN Y+EA+ F M G S S+
Sbjct: 331 TRCGKMPQAERILRQMNNADVVTWNSLIKGYVQNLMYKEALEFFSDMIAAGHKSDEVSMT 390
Query: 362 STLSSCASLGWIMLGQQIHGEGLKLGLDSDVSVSNALLSLYADAGYLSRCLKVFFLMPEH 421
S +++ L ++ G ++H +K G DS++ V N L+ +Y+ + F M +
Sbjct: 391 SIIAASGRLSNLLAGMELHAYVIKHGWDSNLQVGNTLIDMYSKCNLTCYMGRAFLRMHDK 450
Query: 422 DQVSWNSVIGAFADSEALVSEAVKYYLDMRRAGWSPNGVTFINILAAASSFSMGKLGHQV 481
D +SW +VI +A ++ V EA++ + D+ + + + +IL A+S + ++
Sbjct: 451 DLISWTTVIAGYAQNDCHV-EALELFRDVAKKRMEIDEMILGSILRASSVLKSMLIVKEI 509
Query: 482 HAQVIKYNVANETTIENALLSCYGKCGEMDDCEKIFARMSERRDEVSWNSMISGYIHNEL 541
H +++ + + T I+N L+ YGKC M ++F + + +D VSW SMIS N
Sbjct: 510 HCHILRKGLLD-TVIQNELVDVYGKCRNMGYATRVFESI-KGKDVVSWTSMISSSALNGN 567
Query: 542 LPKAMNLVWFMMQRGQRLDHFTFATVLSACASVATLERGMEVHACGVRA--CLEFDVVIG 599
+A+ L M++ G D +LSA AS++ L +G E+H +R CLE + +
Sbjct: 568 ESEAVELFRRMVETGLSADSVALLCILSAAASLSALNKGREIHCYLLRKGFCLEGSIAV- 626
Query: 600 SALVDMYSKCGRIDYASRFFDLMPVRNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPL 659
A+VDMY+ CG + A FD + + + + SMI+ Y HG G A+ LF +M+ +
Sbjct: 627 -AVVDMYACCGDLQSAKAVFDRIERKGLLQYTSMINAYGMHGCGKAAVELFDKMRHENVS 685
Query: 660 PDHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEE 719
PDH++F+ +L ACSHAGL+DEG K M Y L P E + C+VD+LGRA + + E
Sbjct: 686 PDHISFLALLYACSHAGLLDEGRGFLKIMEHEYELEPWPEHYVCLVDMLGRANCVVEAFE 745
Query: 720 FINKMPITPNSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASG 779
F+ M P + +W +L A CR++ K E+G AA L E+EP+N N VL++N++A
Sbjct: 746 FVKMMKTEPTAEVWCALLAA-CRSHSEK-EIGEIAAQRLLELEPKNPGNLVLVSNVFAEQ 803
Query: 780 GKWEDVAKARKAMKEAEVKKEAGCSWVTMKDGVHVFVAGDESHPEKDLIYEKLKELNQKM 839
G+W DV K R MK + ++K GCSW+ M VH F A D+SHPE IYEKL E+ +K+
Sbjct: 804 GRWNDVEKVRAKMKASGMEKHPGCSWIEMDGKVHKFTARDKSHPESKEIYEKLSEVTRKL 863
Query: 840 -RDAGYVPQTKFALFDLEPESKEDLVSYHSEKIAVAFVLTRNS-KLPIRIMKNLRVCGDC 897
R+ GYV TKF L +++ K ++ HSE+IA+A+ L R + +RI KNLRVC DC
Sbjct: 864 EREVGYVADTKFVLHNVDEGEKVQMLHGHSERIAIAYGLLRTPDRACLRITKNLRVCRDC 923
Query: 898 HSAFKFISKIVGREIVLRDSNRFHHFNDGKCSCGDYW 934
H+ K +SK+ R+IV+RD+NRFHHF G CSCGD W
Sbjct: 924 HTFCKLVSKLFRRDIVMRDANRFHHFESGLCSCGDSW 960
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290 OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 505 bits (1300), Expect = e-142, Method: Compositional matrix adjust.
Identities = 284/763 (37%), Positives = 429/763 (56%), Gaps = 49/763 (6%)
Query: 215 LQQILAMVKKAGLLSDLYVGSALVSGFARLGNFYYARKIFEQMIQKNVVSMNGLMEG--- 271
L+QIL +V K GL + + + LVS F R G+ A ++FE + K V + +++G
Sbjct: 53 LRQILPLVFKNGLYQEHFFQTKLVSLFCRYGSVDEAARVFEPIDSKLNVLYHTMLKGFAK 112
Query: 272 --------------------------------------RRKGKEVHGYLIRSGL-FDMVA 292
R GKE+HG L++SG D+ A
Sbjct: 113 VSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFA 172
Query: 293 VGNGLVNMYAKCGTIDDSRSVFRFMIGKDSVSWNTMISGLDQNGCYEEAIMNFCAMRRDG 352
+ GL NMYAKC ++++R VF M +D VSWNT+++G QNG A+ +M +
Sbjct: 173 M-TGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEEN 231
Query: 353 LMSSNFSLISTLSSCASLGWIMLGQQIHGEGLKLGLDSDVSVSNALLSLYADAGYLSRCL 412
L S +++S L + ++L I +G++IHG ++ G DS V++S AL+ +YA G L
Sbjct: 232 LKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETAR 291
Query: 413 KVFFLMPEHDQVSWNSVIGAFADSEALVSEAVKYYLDMRRAGWSPNGVTFINILAAASSF 472
++F M E + VSWNS+I A+ +E EA+ + M G P V+ + L A +
Sbjct: 292 QLFDGMLERNVVSWNSMIDAYVQNEN-PKEAMLIFQKMLDEGVKPTDVSVMGALHACADL 350
Query: 473 SMGKLGHQVHAQVIKYNVANETTIENALLSCYGKCGEMDDCEKIFARMSERRDEVSWNSM 532
+ G +H ++ + ++ N+L+S Y KC E+D +F ++ + R VSWN+M
Sbjct: 351 GDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKL-QSRTLVSWNAM 409
Query: 533 ISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVATLERGMEVHACGVRACL 592
I G+ N A+N M R + D FT+ +V++A A ++ +H +R+CL
Sbjct: 410 ILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCL 469
Query: 593 EFDVVIGSALVDMYSKCGRIDYASRFFDLMPVRNVYSWNSMISGYARHGHGDKALTLFSQ 652
+ +V + +ALVDMY+KCG I A FD+M R+V +WN+MI GY HG G AL LF +
Sbjct: 470 DKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEE 529
Query: 653 MKLDGPLPDHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAG 712
M+ P+ VTF+ V+SACSH+GLV+ G K F M + Y + ++ + MVDLLGRAG
Sbjct: 530 MQKGTIKPNGVTFLSVISACSHSGLVEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAG 589
Query: 713 ELDKIEEFINKMPITPNSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLL 772
L++ +FI +MP+ P ++ +LGAC + KAA LFE+ P + +VLL
Sbjct: 590 RLNEAWDFIMQMPVKPAVNVYGAMLGAC--QIHKNVNFAEKAAERLFELNPDDGGYHVLL 647
Query: 773 ANMYASGGKWEDVAKARKAMKEAEVKKEAGCSWVTMKDGVHVFVAGDESHPEKDLIYEKL 832
AN+Y + WE V + R +M ++K GCS V +K+ VH F +G +HP+ IY L
Sbjct: 648 ANIYRAASMWEKVGQVRVSMLRQGLRKTPGCSMVEIKNEVHSFFSGSTAHPDSKKIYAFL 707
Query: 833 KELNQKMRDAGYVPQTKFALFDLEPESKEDLVSYHSEKIAVAF-VLTRNSKLPIRIMKNL 891
++L +++AGYVP T L +E + KE L+S HSEK+A++F +L + I + KNL
Sbjct: 708 EKLICHIKEAGYVPDTNLVL-GVENDVKEQLLSTHSEKLAISFGLLNTTAGTTIHVRKNL 766
Query: 892 RVCGDCHSAFKFISKIVGREIVLRDSNRFHHFNDGKCSCGDYW 934
RVC DCH+A K+IS + GREIV+RD RFHHF +G CSCGDYW
Sbjct: 767 RVCADCHNATKYISLVTGREIVVRDMQRFHHFKNGACSCGDYW 809
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SHZ8|PP168_ARATH Pentatricopeptide repeat-containing protein At2g22070 OS=Arabidopsis thaliana GN=PCMP-H41 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 501 bits (1290), Expect = e-140, Method: Compositional matrix adjust.
Identities = 289/792 (36%), Positives = 440/792 (55%), Gaps = 100/792 (12%)
Query: 210 SGSYLLQQILAMVKKAGLLSDLYVGSALVSGFARLGNFYYARKIFEQMIQKNVVSMNGLM 269
+G + Q + V K+GL+ +Y+ + L++ +++ G +ARK+F++M + S N ++
Sbjct: 28 NGRFTAQLVHCRVIKSGLMFSVYLMNNLMNVYSKTGYALHARKLFDEMPLRTAFSWNTVL 87
Query: 270 EGRRKGKEVHGYLIRSGLFDMVAVGNGLVNMYAKCGTIDDSRSVFRFMIGKDSVSWNTMI 329
Y+K G +D + F + +DSVSW TMI
Sbjct: 88 SA-----------------------------YSKRGDMDSTCEFFDQLPQRDSVSWTTMI 118
Query: 330 SGLDQNGCYEEAIMNFCAMRRDGLMSSNFSLISTLSSCASLGWIMLGQQIHGEGLKLGLD 389
G G Y +AI M ++G+ + F+L + L+S A+ + G+++H +KLGL
Sbjct: 119 VGYKNIGQYHKAIRVMGDMVKEGIEPTQFTLTNVLASVAATRCMETGKKVHSFIVKLGLR 178
Query: 390 SDVSVSNALLSLYA-------------------------------DAGYLSRCLKVFFLM 418
+VSVSN+LL++YA G + + F M
Sbjct: 179 GNVSVSNSLLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQM 238
Query: 419 PEHDQVSWNSVIGAFADSEALVSEAVKYYLDM-RRAGWSPNGVTFINILAAASSFSMGKL 477
E D V+WNS+I F + A+ + M R + SP+ T ++L+A ++ +
Sbjct: 239 AERDIVTWNSMISGF-NQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCI 297
Query: 478 GHQVHAQVIKYNVANETTIENALLSCYGKCG----------------------------- 508
G Q+H+ ++ + NAL+S Y +CG
Sbjct: 298 GKQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGY 357
Query: 509 ----EMDDCEKIFARMSERRDEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTF 564
+M+ + IF + +R D V+W +MI GY + +A+NL M+ GQR + +T
Sbjct: 358 IKLGDMNQAKNIFVSLKDR-DVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTL 416
Query: 565 ATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPV 624
A +LS +S+A+L G ++H V++ + V + +AL+ MY+K G I ASR FDL+
Sbjct: 417 AAMLSVASSLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGNITSASRAFDLIRC 476
Query: 625 -RNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGFK 683
R+ SW SMI A+HGH ++AL LF M ++G PDH+T+VGV SAC+HAGLV++G +
Sbjct: 477 ERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQ 536
Query: 684 HFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKMPITPNSLIWRTVLGACCRA 743
+F M V +IP L ++CMVDL GRAG L + +EFI KMPI P+ + W ++L A CR
Sbjct: 537 YFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSA-CRV 595
Query: 744 NCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMKEAEVKKEAGC 803
+ + +LG+ AA L +EP+N+ Y LAN+Y++ GKWE+ AK RK+MK+ VKKE G
Sbjct: 596 H-KNIDLGKVAAERLLLLEPENSGAYSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGF 654
Query: 804 SWVTMKDGVHVFVAGDESHPEKDLIYEKLKELNQKMRDAGYVPQTKFALFDLEPESKEDL 863
SW+ +K VHVF D +HPEK+ IY +K++ +++ GYVP T L DLE E KE +
Sbjct: 655 SWIEVKHKVHVFGVEDGTHPEKNEIYMTMKKIWDEIKKMGYVPDTASVLHDLEEEVKEQI 714
Query: 864 VSYHSEKIAVAF-VLTRNSKLPIRIMKNLRVCGDCHSAFKFISKIVGREIVLRDSNRFHH 922
+ +HSEK+A+AF +++ K +RIMKNLRVC DCH+A KFISK+VGREI++RD+ RFHH
Sbjct: 715 LRHHSEKLAIAFGLISTPDKTTLRIMKNLRVCNDCHTAIKFISKLVGREIIVRDTTRFHH 774
Query: 923 FNDGKCSCGDYW 934
F DG CSC DYW
Sbjct: 775 FKDGFCSCRDYW 786
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 500 bits (1288), Expect = e-140, Method: Compositional matrix adjust.
Identities = 290/788 (36%), Positives = 447/788 (56%), Gaps = 76/788 (9%)
Query: 154 DLISWNSIISVYSQRGDTISVFKLFSRMQREGFRYSLKPNEYTFGSLITAAYSSVLSGSY 213
D+ WN IS Y + G ++F RM R +SSV SY
Sbjct: 63 DIKEWNVAISSYMRTGRCNEALRVFKRMPR---------------------WSSV---SY 98
Query: 214 LLQQILAMVKKAGLLSDLYVGSALVSGFARLGNFYYARKIFEQMIQKNVVSMNGLMEGRR 273
+ ++SG+ R G F ARK+F++M ++++VS N +++G
Sbjct: 99 ---------------------NGMISGYLRNGEFELARKLFDEMPERDLVSWNVMIKGYV 137
Query: 274 KGKEVHGYLIRSGLFDM-----VAVGNGLVNMYAKCGTIDDSRSVFRFMIGKDSVSWNTM 328
+ + + LF++ V N +++ YA+ G +DD+RSVF M K+ VSWN +
Sbjct: 138 RNRNLGKA---RELFEIMPERDVCSWNTMLSGYAQNGCVDDARSVFDRMPEKNDVSWNAL 194
Query: 329 ISGLDQNGCYEEAIMNFCAMRRDGLMSSNFSLISTLSSCASLGWIMLGQQIHGEGLKLGL 388
+S QN EEA M F + N++L+S +C G++ + + +
Sbjct: 195 LSAYVQNSKMEEACMLFKS-------RENWALVSW--NCLLGGFVKKKKIVEARQFFDSM 245
Query: 389 D-SDVSVSNALLSLYADAGYLSRCLKVFFLMPEHDQVSWNSVIGAFADSEALVSEAVKYY 447
+ DV N +++ YA +G + ++F P D +W +++ + + +V EA + +
Sbjct: 246 NVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNR-MVEEARELF 304
Query: 448 LDMRRAGWSPNGVTFINILAAASSFSMGKLGHQVHAQVIKYNVANETTIENALLSCYGKC 507
M N V++ +LA ++ ++ + NV + N +++ Y +C
Sbjct: 305 DKMPER----NEVSWNAMLAGYVQGERMEMAKELFDVMPCRNV----STWNTMITGYAQC 356
Query: 508 GEMDDCEKIFARMSERRDEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATV 567
G++ + + +F +M +RD VSW +MI+GY + +A+ L M + G RL+ +F++
Sbjct: 357 GKISEAKNLFDKMP-KRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSA 415
Query: 568 LSACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPVRNV 627
LS CA V LE G ++H V+ E +G+AL+ MY KCG I+ A+ F M +++
Sbjct: 416 LSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDI 475
Query: 628 YSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGFKHFKS 687
SWN+MI+GY+RHG G+ AL F MK +G PD T V VLSACSH GLVD+G ++F +
Sbjct: 476 VSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFYT 535
Query: 688 MSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKMPITPNSLIWRTVLGACCRANCRK 747
M+Q YG++P + ++CMVDLLGRAG L+ + MP P++ IW T+LGA R +
Sbjct: 536 MTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGA-SRVHG-N 593
Query: 748 TELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMKEAEVKKEAGCSWVT 807
TEL AA+ +F MEP+N+ YVLL+N+YAS G+W DV K R M++ VKK G SW+
Sbjct: 594 TELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIE 653
Query: 808 MKDGVHVFVAGDESHPEKDLIYEKLKELNQKMRDAGYVPQTKFALFDLEPESKEDLVSYH 867
+++ H F GDE HPEKD I+ L+EL+ +M+ AGYV +T L D+E E KE +V YH
Sbjct: 654 IQNKTHTFSVGDEFHPEKDEIFAFLEELDLRMKKAGYVSKTSVVLHDVEEEEKERMVRYH 713
Query: 868 SEKIAVAFVLTR-NSKLPIRIMKNLRVCGDCHSAFKFISKIVGREIVLRDSNRFHHFNDG 926
SE++AVA+ + R +S PIR++KNLRVC DCH+A K++++I GR I+LRD+NRFHHF DG
Sbjct: 714 SERLAVAYGIMRVSSGRPIRVIKNLRVCEDCHNAIKYMARITGRLIILRDNNRFHHFKDG 773
Query: 927 KCSCGDYW 934
CSCGDYW
Sbjct: 774 SCSCGDYW 781
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 934 | ||||||
| 147789959 | 1539 | hypothetical protein VITISV_024322 [Viti | 1.0 | 0.606 | 0.704 | 0.0 | |
| 449453750 | 1067 | PREDICTED: putative pentatricopeptide re | 1.0 | 0.875 | 0.674 | 0.0 | |
| 359485832 | 1736 | PREDICTED: putative pentatricopeptide re | 0.997 | 0.536 | 0.686 | 0.0 | |
| 357477865 | 1134 | Pentatricopeptide repeat-containing prot | 0.997 | 0.821 | 0.653 | 0.0 | |
| 356553444 | 1033 | PREDICTED: putative pentatricopeptide re | 0.998 | 0.903 | 0.653 | 0.0 | |
| 15242550 | 995 | pentatricopeptide repeat-containing prot | 0.992 | 0.931 | 0.634 | 0.0 | |
| 297811097 | 970 | pentatricopeptide repeat-containing prot | 0.965 | 0.929 | 0.612 | 0.0 | |
| 224107052 | 781 | predicted protein [Populus trichocarpa] | 0.763 | 0.912 | 0.710 | 0.0 | |
| 224121748 | 777 | predicted protein [Populus trichocarpa] | 0.773 | 0.929 | 0.677 | 0.0 | |
| 414881621 | 1058 | TPA: hypothetical protein ZEAMMB73_72328 | 0.991 | 0.875 | 0.534 | 0.0 |
| >gi|147789959|emb|CAN73858.1| hypothetical protein VITISV_024322 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1400 bits (3625), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 690/980 (70%), Positives = 800/980 (81%), Gaps = 46/980 (4%)
Query: 1 SKDAKLFHLQILKHGFAYDVFLCNTLINVYVRVGDLASASKLFDEMPDRNSVSWACIVSG 60
S++A+ HLQ +K+GF ++FL NTLIN+YVR+GDL SA KLFDEM +RN V+WAC++SG
Sbjct: 560 SEEARELHLQSIKYGFVGNLFLSNTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISG 619
Query: 61 YTHKGMSNEACKMFKEMVRAGFLLNRYALGSVLRACQECGPSGFKFGMQVHCLVLKSNQT 120
YT G +EAC F++MVRAGF+ N YA GS LRACQE GPSG K G+Q+H L+ K+
Sbjct: 620 YTQNGKPDEACARFRDMVRAGFIPNHYAFGSALRACQESGPSGCKLGVQIHGLISKTRYG 679
Query: 121 FDGLVSNVLIAMYGSCLESTDCARRIFEEIETRDLISWNSIISVYSQRGDTISVFKLFSR 180
D +V NVLI+MYGSCL+S + AR +F+ I R+ ISWNSIISVYS+RGD +S + LFS
Sbjct: 680 SDVVVCNVLISMYGSCLDSANDARSVFDRIGIRNSISWNSIISVYSRRGDXVSAYDLFSS 739
Query: 181 MQREGFRYSLKPNEYTFGSLITAAYSSVLSGSYLLQQILAMVKKAGLLSDLYVGSALVSG 240
MQ+EG +S KPNEYTFGSLITAA SSV G +L+Q+LA V+K+G L DLYVGSALVSG
Sbjct: 740 MQKEGLGFSFKPNEYTFGSLITAACSSVDFGLCVLEQMLARVEKSGFLQDLYVGSALVSG 799
Query: 241 FARLGNFYYARKIFEQMIQKNVVSMNGLM------------------------------- 269
FAR G A+ IFEQM +NVVSMNGLM
Sbjct: 800 FARFGLTDDAKNIFEQMGVRNVVSMNGLMVGLVKQKQGEAAAKVFHEMKDLVGINSDSYV 859
Query: 270 -------------EGRRKGKEVHGYLIRSGLFD-MVAVGNGLVNMYAKCGTIDDSRSVFR 315
EGRRKG+EVH ++IR+GL D VA+GNGLVNMYAK G I D+ SVF
Sbjct: 860 VLLSAFSEFSVLEEGRRKGREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADACSVFE 919
Query: 316 FMIGKDSVSWNTMISGLDQNGCYEEAIMNFCAMRRDGLMSSNFSLISTLSSCASLGWIML 375
M+ KDSVSWN++ISGLDQN C E+A +F MRR G M SNF+LISTLSSCASLGWIML
Sbjct: 920 LMVEKDSVSWNSLISGLDQNECSEDAAESFLRMRRTGSMPSNFTLISTLSSCASLGWIML 979
Query: 376 GQQIHGEGLKLGLDSDVSVSNALLSLYADAGYLSRCLKVFFLMPEHDQVSWNSVIGAFAD 435
G+QIH +GLKLGLD+DVSVSNALL+LYA+ G + CLKVF LMPE+DQVSWNSVIGA +D
Sbjct: 980 GEQIHCDGLKLGLDTDVSVSNALLALYAETGCFTECLKVFSLMPEYDQVSWNSVIGALSD 1039
Query: 436 SEALVSEAVKYYLDMRRAGWSPNGVTFINILAAASSFSMGKLGHQVHAQVIKYNVANETT 495
SEA VS+AVKY+L+M R GW + VTFINIL+A SS S+ ++ HQ+HA V+KY ++++T
Sbjct: 1040 SEASVSQAVKYFLEMMRGGWGLSRVTFINILSAVSSLSLHEVSHQIHALVLKYCLSDDTA 1099
Query: 496 IENALLSCYGKCGEMDDCEKIFARMSERRDEVSWNSMISGYIHNELLPKAMNLVWFMMQR 555
I NALLSCYGKCGEM++CEKIFARMSE RDEVSWNSMISGYIHNELL KAM+LVWFMMQ+
Sbjct: 1100 IGNALLSCYGKCGEMNECEKIFARMSETRDEVSWNSMISGYIHNELLHKAMDLVWFMMQK 1159
Query: 556 GQRLDHFTFATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYA 615
GQRLD FTFATVLSACASVATLERGMEVHACG+RAC+E DVV+GSALVDMYSKCGRIDYA
Sbjct: 1160 GQRLDSFTFATVLSACASVATLERGMEVHACGIRACMESDVVVGSALVDMYSKCGRIDYA 1219
Query: 616 SRFFDLMPVRNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVT-FVGVLSACSH 674
SRFF+LMP+RNVYSWNSMISGYARHGHG+KAL LF++M LDG PDHV +GVLSACSH
Sbjct: 1220 SRFFELMPLRNVYSWNSMISGYARHGHGEKALKLFTRMMLDGQPPDHVAPLLGVLSACSH 1279
Query: 675 AGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKMPITPNSLIWR 734
G V+EGF+HFKSMS+VY L P++E FSCMVDLLGRAG+LD++ +FIN MP+ PN LIWR
Sbjct: 1280 VGFVEEGFEHFKSMSEVYRLSPRVEHFSCMVDLLGRAGKLDEVGDFINSMPMKPNVLIWR 1339
Query: 735 TVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMKE 794
TVLGACCRAN R TELGR+AA ML E+EPQNAVNYVLLANMYASG KWEDVAKAR AMKE
Sbjct: 1340 TVLGACCRANGRNTELGRRAAEMLLELEPQNAVNYVLLANMYASGEKWEDVAKARXAMKE 1399
Query: 795 AEVKKEAGCSWVTMKDGVHVFVAGDESHPEKDLIYEKLKELNQKMRDAGYVPQTKFALFD 854
A VKKEAGCSWVTMKDGVHVFVAGD+ HPEKD IY+KL+ELN+KMRDAGY+PQTK+ALFD
Sbjct: 1400 AAVKKEAGCSWVTMKDGVHVFVAGDKLHPEKDXIYDKLRELNRKMRDAGYIPQTKYALFD 1459
Query: 855 LEPESKEDLVSYHSEKIAVAFVLTRNSKLPIRIMKNLRVCGDCHSAFKFISKIVGREIVL 914
LE E+KE+L+SYHSEKIAVAFVLTR S LPIRIMKNLRVCGDCHSAF +ISKIVGR+IVL
Sbjct: 1460 LELENKEELLSYHSEKIAVAFVLTRQSALPIRIMKNLRVCGDCHSAFGYISKIVGRQIVL 1519
Query: 915 RDSNRFHHFNDGKCSCGDYW 934
RDSNRFHHF DGKCSCGDYW
Sbjct: 1520 RDSNRFHHFEDGKCSCGDYW 1539
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449453750|ref|XP_004144619.1| PREDICTED: putative pentatricopeptide repeat-containing protein At5g09950-like [Cucumis sativus] gi|449506934|ref|XP_004162888.1| PREDICTED: putative pentatricopeptide repeat-containing protein At5g09950-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1373 bits (3555), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 660/979 (67%), Positives = 779/979 (79%), Gaps = 45/979 (4%)
Query: 1 SKDAKLFHLQILKHGFAYDVFLCNTLINVYVRVGDLASASKLFDEMPDRNSVSWACIVSG 60
SKDA+ HLQ+ K+GF D+FLCNTLIN+Y RVGDL S K+FDEMP RN VSW+C++SG
Sbjct: 89 SKDAEELHLQLFKNGFVNDLFLCNTLINIYARVGDLGSGRKVFDEMPLRNLVSWSCLISG 148
Query: 61 YTHKGMSNEACKMFKEMVRAGFLLNRYALGSVLRACQECGPSGFKFGMQVHCLVLKSNQT 120
YT M NEAC++F++MV GF+ N YA GSV+RACQECG G KFGMQ+H L+ K+
Sbjct: 149 YTRNRMPNEACELFRKMVSDGFMPNHYAFGSVIRACQECGEYGLKFGMQIHGLMSKTQYV 208
Query: 121 FDGLVSNVLIAMYGSCLESTDCARRIFEEIETRDLISWNSIISVYSQRGDTISVFKLFSR 180
D SNVLI+MYG+ L D ARR F+ I R+L+S NS+ISVY QRGD +S F +FS
Sbjct: 209 NDVTASNVLISMYGNALGMVDYARRAFDSIWPRNLVSLNSMISVYCQRGDAVSAFDIFST 268
Query: 181 MQREGFRYSLKPNEYTFGSLITAAYSSVLSGSYLLQQILAMVKKAGLLSDLYVGSALVSG 240
MQ+E LKPNEYTFGSLI+A S SG LL+Q+L V+K+G L DLYVGSALVSG
Sbjct: 269 MQKEVMGDGLKPNEYTFGSLISATCSLANSGLVLLEQLLTRVEKSGFLHDLYVGSALVSG 328
Query: 241 FARLGNFYYARKIFEQMIQKNVVSMNGLM------------------------------- 269
FA+ G+ YA+ IF++M +NVVS+NGL+
Sbjct: 329 FAKAGSIGYAKNIFQKMSYRNVVSLNGLIIGLVRQKRGEEAVELFMEMKDSVELNPNSYM 388
Query: 270 -------------EGRRKGKEVHGYLIRSGLFD-MVAVGNGLVNMYAKCGTIDDSRSVFR 315
G+RKG EVH +LIRSGL + +A+GNGL+NMYAKCG I+D+ VFR
Sbjct: 389 IILTAFPEFHVLENGKRKGSEVHAFLIRSGLLNAQIAIGNGLINMYAKCGAINDACVVFR 448
Query: 316 FMIGKDSVSWNTMISGLDQNGCYEEAIMNFCAMRRDGLMSSNFSLISTLSSCASLGWIML 375
M KDSV+WN+MI+GLDQN + EA+ F MRR L SNF++IS LSSCASLGWI +
Sbjct: 449 LMDNKDSVTWNSMITGLDQNKQFLEAVKTFQEMRRTELYPSNFTMISALSSCASLGWISV 508
Query: 376 GQQIHGEGLKLGLDSDVSVSNALLSLYADAGYLSRCLKVFFLMPEHDQVSWNSVIGAFAD 435
G+Q+H EGLKLGLD DVSVSNALL+LY + GY+ C K F LM ++D VSWNS+IGA AD
Sbjct: 509 GEQLHCEGLKLGLDLDVSVSNALLALYGECGYVKECQKAFSLMLDYDHVSWNSLIGALAD 568
Query: 436 SEALVSEAVKYYLDMRRAGWSPNGVTFINILAAASSFSMGKLGHQVHAQVIKYNVANETT 495
SE + EAV+ +L M RAGW PN VTFI ILAA SS S+ +LG Q+HA V+K NVA +T
Sbjct: 569 SEPSMLEAVESFLVMMRAGWDPNRVTFITILAAVSSLSLHELGKQIHALVLKRNVAADTA 628
Query: 496 IENALLSCYGKCGEMDDCEKIFARMSERRDEVSWNSMISGYIHNELLPKAMNLVWFMMQR 555
IENALL+CYGKCG+M CE IF+RMS+R+DEVSWNSMISGYIHNELLPKAM++VWFMMQ+
Sbjct: 629 IENALLACYGKCGDMGYCENIFSRMSDRQDEVSWNSMISGYIHNELLPKAMDMVWFMMQK 688
Query: 556 GQRLDHFTFATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYA 615
GQRLD FTFATVLSACA+VATLERGMEVH C VRACLE D+VIGSALVDMY+KCGRIDYA
Sbjct: 689 GQRLDGFTFATVLSACATVATLERGMEVHGCSVRACLESDIVIGSALVDMYAKCGRIDYA 748
Query: 616 SRFFDLMPVRNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHA 675
SRFF++MP RN+YSWNSMISGYARHGHG K+L LF+QMKL GPLPDHVTFVGVLSACSHA
Sbjct: 749 SRFFEMMPARNLYSWNSMISGYARHGHGTKSLDLFAQMKLQGPLPDHVTFVGVLSACSHA 808
Query: 676 GLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKMPITPNSLIWRT 735
GLV+EGF HF SMS++YGL P++E FSCMVDLLGR GEL+K+E+F+N+MP+ PN LIWRT
Sbjct: 809 GLVNEGFSHFDSMSEIYGLAPRMEHFSCMVDLLGRVGELNKMEDFLNQMPVKPNVLIWRT 868
Query: 736 VLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMKEA 795
VLGACCRAN R T LGR+AA ML EMEP NAVNY+LL+NMYASGGKW+DVAK R AM++A
Sbjct: 869 VLGACCRANGRNTALGRRAAEMLLEMEPTNAVNYILLSNMYASGGKWDDVAKTRVAMRKA 928
Query: 796 EVKKEAGCSWVTMKDGVHVFVAGDESHPEKDLIYEKLKELNQKMRDAGYVPQTKFALFDL 855
VKKEAGCSWVTMKDGVHVFVAGD+SHPEKDLIYEKLKELN KMR AGY+P+T+FAL+DL
Sbjct: 929 FVKKEAGCSWVTMKDGVHVFVAGDKSHPEKDLIYEKLKELNGKMRLAGYIPETRFALYDL 988
Query: 856 EPESKEDLVSYHSEKIAVAFVLTRNSKLPIRIMKNLRVCGDCHSAFKFISKIVGREIVLR 915
E ESKE+L+SYHSEKIAVAFVLTR SK+PIRI+KNLRVCGDCHSAFK+IS+IV R+IVLR
Sbjct: 989 EGESKEELLSYHSEKIAVAFVLTRPSKMPIRILKNLRVCGDCHSAFKYISQIVERQIVLR 1048
Query: 916 DSNRFHHFNDGKCSCGDYW 934
DSNRFHHF +GKCSCGD+W
Sbjct: 1049 DSNRFHHFENGKCSCGDFW 1067
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359485832|ref|XP_002268817.2| PREDICTED: putative pentatricopeptide repeat-containing protein At5g09950 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1353 bits (3501), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 673/980 (68%), Positives = 787/980 (80%), Gaps = 48/980 (4%)
Query: 1 SKDAKLFHLQILKHGFAYDVFLCNTLINVYVRVGDLASASKLFDEMPDRNSVSWACIVSG 60
S++A+ HLQ +K+GF ++FL NTLIN+YVR+GDL SA KLFDEM +RN V+WAC++SG
Sbjct: 87 SEEARELHLQSIKYGFVGNLFLSNTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISG 146
Query: 61 YTHKGMSNEACKMFKEMVRAGFLLNRYALGSVLRACQECGPSGFKFGMQVHCLVLKSNQT 120
YT G +EAC F++MVRAGF+ N YA GS LRACQE GPSG K G+Q+H L+ K+
Sbjct: 147 YTQNGKPDEACARFRDMVRAGFIPNHYAFGSALRACQESGPSGCKLGVQIHGLISKTRYG 206
Query: 121 FDGLVSNVLIAMYGSCLESTDCARRIFEEIETRDLISWNSIISVYSQRGDTISVFKLFSR 180
D +V NVLI+MYGSCL+S + AR +F+ I R+ ISWNSIISVYS+RGD +S + LFS
Sbjct: 207 SDVVVCNVLISMYGSCLDSANDARSVFDGIGIRNSISWNSIISVYSRRGDAVSAYDLFSS 266
Query: 181 MQREGFRYSLKPNEYTFGSLITAAYSSVLSGSYLLQQILAMVKKAGLLSDLYVGSALVSG 240
MQ+EG +S KPNEYTFGSLIT A SSV G +L+Q+LA V+K+G L DLYV SALVSG
Sbjct: 267 MQKEGLGFSFKPNEYTFGSLITTACSSVDFGLCVLEQMLARVEKSGFLQDLYVSSALVSG 326
Query: 241 FARLGNFYYARKIFEQMIQKNVVSMNGLM------------------------------- 269
FAR G A+ IFEQM +NVVSMNGLM
Sbjct: 327 FARFGLTDDAKNIFEQMGVRNVVSMNGLMVGLVKQKQGEAAAKVFHEMKDLVGINSDSYV 386
Query: 270 -------------EGRRKGKEVHGYLIRSGLFD-MVAVGNGLVNMYAKCGTIDDSRSVFR 315
EGRRKG+EVH ++IR+GL D VA+GNGLVNMYAK G I D+ SVF
Sbjct: 387 VLLSAFSEFSVLEEGRRKGREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADACSVFE 446
Query: 316 FMIGKDSVSWNTMISGLDQNGCYEEAIMNFCAMRRDGLMSSNFSLISTLSSCASLGWIML 375
M+ KDSVSWN++ISGLDQN C E+A +F MRR G M SNF+LISTLSSCASLGWIML
Sbjct: 447 LMVEKDSVSWNSLISGLDQNECSEDAAESFHRMRRTGSMPSNFTLISTLSSCASLGWIML 506
Query: 376 GQQIHGEGLKLGLDSDVSVSNALLSLYADAGYLSRCLKVFFLMPEHDQVSWNSVIGAFAD 435
G+QIH +GLKLGLD+DVSVSNALL+LYA+ G + CLKVF LMPE+DQVSWNSVIGA +D
Sbjct: 507 GEQIHCDGLKLGLDTDVSVSNALLALYAETGCFTECLKVFSLMPEYDQVSWNSVIGALSD 566
Query: 436 SEALVSEAVKYYLDMRRAGWSPNGVTFINILAAASSFSMGKLGHQVHAQVIKYNVANETT 495
SEA VS+AVKY+L M R GW + VTFINIL+A SS S+ ++ HQ+HA V+KY ++++T
Sbjct: 567 SEASVSQAVKYFLQMMRGGWGLSRVTFINILSAVSSLSLHEVSHQIHALVLKYCLSDDTA 626
Query: 496 IENALLSCYGKCGEMDDCEKIFARMSERRDEVSWNSMISGYIHNELLPKAMNLVWFMMQR 555
I NALLSCYGKCGEM++CEKIFARMSE RDEVSWNSMISGYIHNELL KAM+LVWFMMQ+
Sbjct: 627 IGNALLSCYGKCGEMNECEKIFARMSETRDEVSWNSMISGYIHNELLHKAMDLVWFMMQK 686
Query: 556 GQRLDHFTFATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYA 615
GQRLD FTFAT+LSACASVATLERGMEVHACG+RACLE DVV+GSALVDMYSKCGRIDYA
Sbjct: 687 GQRLDSFTFATILSACASVATLERGMEVHACGIRACLESDVVVGSALVDMYSKCGRIDYA 746
Query: 616 SRFFDLMPVRNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHA 675
SRFF+LMP+RNVYSWNSMISGYARHGHG+KAL LF++M LDG PDHVTFVGVLSACSH
Sbjct: 747 SRFFELMPLRNVYSWNSMISGYARHGHGEKALKLFTRMMLDGQPPDHVTFVGVLSACSHV 806
Query: 676 GLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKMPITPNSLIWRT 735
G V+EGF+HFKSMS+VY L P++E FSCMVDLLGRAG+LD++ +FIN MP+ PN LIWRT
Sbjct: 807 GFVEEGFEHFKSMSEVYRLSPRVEHFSCMVDLLGRAGKLDEVGDFINSMPMKPNVLIWRT 866
Query: 736 VLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMKEA 795
VLGACCRAN R TELGR+AA ML E+EPQNAVNYVLLANMYASG KWEDVAKAR AMKEA
Sbjct: 867 VLGACCRANGRNTELGRRAAEMLLELEPQNAVNYVLLANMYASGEKWEDVAKARTAMKEA 926
Query: 796 EVKKEAGCSWVTMKDGVHVFVAGDESHPEKDLIYEKLKELNQKMRDAGYVPQTKFALFDL 855
VKKEAGCSWVTMKDGVHVFVAGD+ HPEKDLIY+KL+ELN+KMRDAGY+PQTK+ALFDL
Sbjct: 927 AVKKEAGCSWVTMKDGVHVFVAGDKLHPEKDLIYDKLRELNRKMRDAGYIPQTKYALFDL 986
Query: 856 EPESKEDLVSYHSEKIAVAFVLTRNSKLPIRIMKNLRVCGDCHSAFKFISKIV--GREIV 913
E E+KE+L+SYHSEKIAVAFVLTR S LPIRIMKNLRVCGDCHSAF +ISKI+ ++
Sbjct: 987 ELENKEELLSYHSEKIAVAFVLTRQSALPIRIMKNLRVCGDCHSAFGYISKIIFFFLKMA 1046
Query: 914 LRDSNRFHHFNDGKCSCGDY 933
++ SN +C CGD+
Sbjct: 1047 MKPSNNI-WIRRQQCPCGDW 1065
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357477865|ref|XP_003609218.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355510273|gb|AES91415.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1321 bits (3418), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 638/977 (65%), Positives = 772/977 (79%), Gaps = 45/977 (4%)
Query: 3 DAKLFHLQILKHGFAYDVFLCNTLINVYVRVGDLASASKLFDEMPDRNSVSWACIVSGYT 62
DA HLQ+ K GF DVF CNTLIN+YVR+G+L SA KLFDEMP +N VSW+C++SGYT
Sbjct: 158 DANHLHLQLYKTGFTDDVFFCNTLINIYVRIGNLVSARKLFDEMPQKNLVSWSCLISGYT 217
Query: 63 HKGMSNEACKMFKEMVRAGFLLNRYALGSVLRACQECGPSGFKFGMQVHCLVLKSNQTFD 122
M +EAC +FK ++ +G L N +A+GS LRACQ+CG +G K GMQ+H + K D
Sbjct: 218 QNRMPDEACSLFKGVISSGLLPNHFAVGSALRACQQCGSTGIKLGMQIHAFICKLPCVSD 277
Query: 123 GLVSNVLIAMYGSCLESTDCARRIFEEIETRDLISWNSIISVYSQRGDTISVFKLFSRMQ 182
++SNVL++MY C S D A R+F+EI+ R+ ++WNSIISVY +RGD +S FKLFS MQ
Sbjct: 278 MILSNVLMSMYSDCSGSIDDAHRVFDEIKFRNSVTWNSIISVYCRRGDAVSAFKLFSVMQ 337
Query: 183 REGFRYSLKPNEYTFGSLITAAYSSVLSGSYLLQQILAMVKKAGLLSDLYVGSALVSGFA 242
EG +L+PNEYT SL+TAA S G LL+Q+L ++K+G L DLYVGSALV+GFA
Sbjct: 338 MEGVELNLRPNEYTLCSLVTAACSLADCGLVLLEQMLTRIEKSGFLRDLYVGSALVNGFA 397
Query: 243 RLGNFYYARKIFEQMIQKNVVSMNGLM--------------------------------- 269
R G A+ IF+QM +N V+MNGLM
Sbjct: 398 RYGLMDCAKMIFKQMYDRNAVTMNGLMVGLARQHQGEEAAKVFKEMKDLVEINSESLVVL 457
Query: 270 -----------EGRRKGKEVHGYLIRSGLFDM-VAVGNGLVNMYAKCGTIDDSRSVFRFM 317
EG+RKG+EVH YL RSGL D +++GN LVNMY KC ID++ SVF+ M
Sbjct: 458 LSTFTEFSNLKEGKRKGQEVHAYLFRSGLVDARISIGNALVNMYGKCTAIDNACSVFQLM 517
Query: 318 IGKDSVSWNTMISGLDQNGCYEEAIMNFCAMRRDGLMSSNFSLISTLSSCASLGWIMLGQ 377
KD+VSWN+MISGLD N +EEA+ F M+R+G++ SNFS+ISTLSSC+SLGW+ LG+
Sbjct: 518 PSKDTVSWNSMISGLDHNERFEEAVSCFHTMKRNGMVPSNFSVISTLSSCSSLGWLTLGR 577
Query: 378 QIHGEGLKLGLDSDVSVSNALLSLYADAGYLSRCLKVFFLMPEHDQVSWNSVIGAFADSE 437
QIHGEG K GLD DVSVSNALL+LYA+ ++ C KVFF MPE+DQVSWNS IGA A E
Sbjct: 578 QIHGEGFKWGLDLDVSVSNALLTLYAETDSINECQKVFFQMPEYDQVSWNSFIGALAKYE 637
Query: 438 ALVSEAVKYYLDMRRAGWSPNGVTFINILAAASSFSMGKLGHQVHAQVIKYNVANETTIE 497
A V +A+KY+L+M +AGW PN VTFINILAA SSFS+ LGHQ+HA ++KY+VA++ IE
Sbjct: 638 ASVLQALKYFLEMMQAGWRPNRVTFINILAAVSSFSVLGLGHQIHALILKYSVADDNAIE 697
Query: 498 NALLSCYGKCGEMDDCEKIFARMSERRDEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQ 557
NALL+ YGKC +M+DCE IF+RMSERRDEVSWNSMISGY+H+ +L KAM+LVW MMQRGQ
Sbjct: 698 NALLAFYGKCEQMEDCEIIFSRMSERRDEVSWNSMISGYLHSGILHKAMDLVWPMMQRGQ 757
Query: 558 RLDHFTFATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASR 617
+LD FTFATVLSACASVATLERGMEVHAC VRACLE DVV+GSALVDMY+KCG+IDYASR
Sbjct: 758 KLDGFTFATVLSACASVATLERGMEVHACAVRACLESDVVVGSALVDMYAKCGKIDYASR 817
Query: 618 FFDLMPVRNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGL 677
FF+LMPVRN+YSWNSMISGYARHGHG KAL +F++MK G PDHVTFVGVLSACSH GL
Sbjct: 818 FFELMPVRNIYSWNSMISGYARHGHGQKALKIFTRMKQHGQSPDHVTFVGVLSACSHVGL 877
Query: 678 VDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKMPITPNSLIWRTVL 737
VDEG+KHFKSM +VYGL P++E FSCMVDLLGRAG++ KIE+FI MP+ PN LIWRTVL
Sbjct: 878 VDEGYKHFKSMGEVYGLSPRIEHFSCMVDLLGRAGDVKKIEDFIKTMPMDPNILIWRTVL 937
Query: 738 GACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMKEAEV 797
GACCRAN R TELG++AA ML E+EPQNAVNYVLL+NM+A+GG WEDV +AR AM++A V
Sbjct: 938 GACCRANGRNTELGQRAAKMLIELEPQNAVNYVLLSNMHAAGGNWEDVVEARLAMRKAAV 997
Query: 798 KKEAGCSWVTMKDGVHVFVAGDESHPEKDLIYEKLKELNQKMRDAGYVPQTKFALFDLEP 857
KK+AGCSWV MKDGVH+FVAGD++HPEK+ IYEKLKEL K+RDAGYVP+TK+AL+DLE
Sbjct: 998 KKDAGCSWVNMKDGVHLFVAGDQTHPEKEKIYEKLKELMNKIRDAGYVPETKYALYDLEL 1057
Query: 858 ESKEDLVSYHSEKIAVAFVLTRNSKLPIRIMKNLRVCGDCHSAFKFISKIVGREIVLRDS 917
E+KE+L+SYHSEK+A+AFVLTR S+LPIRIMKNLRVCGDCH+AFK+ISKIVGR+I+LRDS
Sbjct: 1058 ENKEELLSYHSEKLAIAFVLTRKSELPIRIMKNLRVCGDCHTAFKYISKIVGRQIILRDS 1117
Query: 918 NRFHHFNDGKCSCGDYW 934
NRFHHF G CSCGDYW
Sbjct: 1118 NRFHHFGGGMCSCGDYW 1134
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356553444|ref|XP_003545066.1| PREDICTED: putative pentatricopeptide repeat-containing protein At5g09950-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1312 bits (3396), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 639/978 (65%), Positives = 769/978 (78%), Gaps = 45/978 (4%)
Query: 2 KDAKLFHLQILKHGFAYDVFLCNTLINVYVRVGDLASASKLFDEMPDRNSVSWACIVSGY 61
+DA HLQI K G DVF CNTL+N++VR G+L SA KLFDEMP +N VSW+C+VSGY
Sbjct: 56 EDAHQLHLQIYKTGLTSDVFWCNTLVNIFVRAGNLVSAQKLFDEMPQKNLVSWSCLVSGY 115
Query: 62 THKGMSNEACKMFKEMVRAGFLLNRYALGSVLRACQECGPSGFKFGMQVHCLVLKSNQTF 121
GM +EAC +F+ ++ AG L N YA+GS LRACQE GP+ K GM++H L+ KS
Sbjct: 116 AQNGMPDEACMLFRGIISAGLLPNHYAIGSALRACQELGPNMLKLGMEIHGLISKSPYAS 175
Query: 122 DGLVSNVLIAMYGSCLESTDCARRIFEEIETRDLISWNSIISVYSQRGDTISVFKLFSRM 181
D ++SNVL++MY C S D ARR+FEEI+ + SWNSIISVY +RGD IS FKLFS M
Sbjct: 176 DMVLSNVLMSMYSHCSASIDDARRVFEEIKMKTSASWNSIISVYCRRGDAISAFKLFSSM 235
Query: 182 QREGFRYSLKPNEYTFGSLITAAYSSVLSGSYLLQQILAMVKKAGLLSDLYVGSALVSGF 241
QRE + +PNEYTF SL+T A S V G LL+Q+LA ++K+ + DLYVGSALVSGF
Sbjct: 236 QREATELNCRPNEYTFCSLVTVACSLVDCGLTLLEQMLARIEKSSFVKDLYVGSALVSGF 295
Query: 242 ARLGNFYYARKIFEQMIQKNVVSMNGLM-------------------------------- 269
AR G A+ IFEQM +N V+MNGLM
Sbjct: 296 ARYGLIDSAKMIFEQMDDRNAVTMNGLMVGLARQHQGEEAAKIFKEMKDLVEINASSYAV 355
Query: 270 ------------EGRRKGKEVHGYLIRSGLFDM-VAVGNGLVNMYAKCGTIDDSRSVFRF 316
EG+RKG+EVH YLIR+ L D+ + +GN LVN+YAKC ID++RS+F+
Sbjct: 356 LLSAFTEFSNLKEGKRKGQEVHAYLIRNALVDVWILIGNALVNLYAKCNAIDNARSIFQL 415
Query: 317 MIGKDSVSWNTMISGLDQNGCYEEAIMNFCAMRRDGLMSSNFSLISTLSSCASLGWIMLG 376
M KD+VSWN++ISGLD N +EEA+ F MRR+G++ S FS+ISTLSSCASLGWIMLG
Sbjct: 416 MPSKDTVSWNSIISGLDHNERFEEAVACFHTMRRNGMVPSKFSVISTLSSCASLGWIMLG 475
Query: 377 QQIHGEGLKLGLDSDVSVSNALLSLYADAGYLSRCLKVFFLMPEHDQVSWNSVIGAFADS 436
QQIHGEG+K GLD DVSVSNALL+LYA+ + KVFFLMPE+DQVSWNS IGA A S
Sbjct: 476 QQIHGEGIKCGLDLDVSVSNALLTLYAETDCMEEYQKVFFLMPEYDQVSWNSFIGALATS 535
Query: 437 EALVSEAVKYYLDMRRAGWSPNGVTFINILAAASSFSMGKLGHQVHAQVIKYNVANETTI 496
EA V +A+KY+L+M +AGW PN VTFINIL+A SS S+ +LG Q+HA ++K++VA++ I
Sbjct: 536 EASVLQAIKYFLEMMQAGWKPNRVTFINILSAVSSLSLLELGRQIHALILKHSVADDNAI 595
Query: 497 ENALLSCYGKCGEMDDCEKIFARMSERRDEVSWNSMISGYIHNELLPKAMNLVWFMMQRG 556
EN LL+ YGKC +M+DCE IF+RMSERRDEVSWN+MISGYIHN +L KAM LVW MMQ+G
Sbjct: 596 ENTLLAFYGKCEQMEDCEIIFSRMSERRDEVSWNAMISGYIHNGILHKAMGLVWLMMQKG 655
Query: 557 QRLDHFTFATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYAS 616
QRLD FT ATVLSACASVATLERGMEVHAC +RACLE +VV+GSALVDMY+KCG+IDYAS
Sbjct: 656 QRLDDFTLATVLSACASVATLERGMEVHACAIRACLEAEVVVGSALVDMYAKCGKIDYAS 715
Query: 617 RFFDLMPVRNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAG 676
RFF+LMPVRN+YSWNSMISGYARHGHG KAL LF+QMK G LPDHVTFVGVLSACSH G
Sbjct: 716 RFFELMPVRNIYSWNSMISGYARHGHGGKALKLFTQMKQHGQLPDHVTFVGVLSACSHVG 775
Query: 677 LVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKMPITPNSLIWRTV 736
LVDEGF+HFKSM +VY L P++E FSCMVDLLGRAG++ K+EEFI MP+ PN+LIWRT+
Sbjct: 776 LVDEGFEHFKSMGEVYELAPRIEHFSCMVDLLGRAGDVKKLEEFIKTMPMNPNALIWRTI 835
Query: 737 LGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMKEAE 796
LGACCRAN R TELGR+AA ML E+EP NAVNYVLL+NM+A+GGKWEDV +AR AM+ AE
Sbjct: 836 LGACCRANSRNTELGRRAAKMLIELEPLNAVNYVLLSNMHAAGGKWEDVEEARLAMRNAE 895
Query: 797 VKKEAGCSWVTMKDGVHVFVAGDESHPEKDLIYEKLKELNQKMRDAGYVPQTKFALFDLE 856
VKKEAGCSWVTMKDGVHVFVAGD++HPEK+ IY+KLKE+ KMRD GYVP+TK+AL+DLE
Sbjct: 896 VKKEAGCSWVTMKDGVHVFVAGDQTHPEKEKIYDKLKEIMNKMRDLGYVPETKYALYDLE 955
Query: 857 PESKEDLVSYHSEKIAVAFVLTRNSKLPIRIMKNLRVCGDCHSAFKFISKIVGREIVLRD 916
E+KE+L+SYHSEK+A+AFVLTR S+LPIRI+KNLRVCGDCH+AFK+IS IV R+I+LRD
Sbjct: 956 LENKEELLSYHSEKLAIAFVLTRQSELPIRIIKNLRVCGDCHTAFKYISNIVNRQIILRD 1015
Query: 917 SNRFHHFNDGKCSCGDYW 934
SNRFHHF+ G CSC DYW
Sbjct: 1016 SNRFHHFDGGICSCQDYW 1033
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15242550|ref|NP_196557.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75170796|sp|Q9FIB2.1|PP373_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein At5g09950 gi|9758973|dbj|BAB09416.1| selenium-binding protein-like [Arabidopsis thaliana] gi|332004087|gb|AED91470.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1269 bits (3285), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 622/980 (63%), Positives = 750/980 (76%), Gaps = 53/980 (5%)
Query: 4 AKLFHLQILKHGFAYDVFLCNTLINVYVRVGDLASASKLFDEMPDRNSVSWACIVSGYTH 63
A+ FH ++ K+ DV+LCN LIN Y+ GD SA K+FDEMP RN VSWACIVSGY+
Sbjct: 20 ARFFHSRLYKNRLDKDVYLCNNLINAYLETGDSVSARKVFDEMPLRNCVSWACIVSGYSR 79
Query: 64 KGMSNEACKMFKEMVRAGFLLNRYALGSVLRACQECGPSGFKFGMQVHCLVLKSNQTFDG 123
G EA ++MV+ G N+YA SVLRACQE G G FG Q+H L+ K + D
Sbjct: 80 NGEHKEALVFLRDMVKEGIFSNQYAFVSVLRACQEIGSVGILFGRQIHGLMFKLSYAVDA 139
Query: 124 LVSNVLIAMYGSCLESTDCARRIFEEIETRDLISWNSIISVYSQRGDTISVFKLFSRMQR 183
+VSNVLI+MY C+ S A F +IE ++ +SWNSIISVYSQ GD S F++FS MQ
Sbjct: 140 VVSNVLISMYWKCIGSVGYALCAFGDIEVKNSVSWNSIISVYSQAGDQRSAFRIFSSMQY 199
Query: 184 EGFRYSLKPNEYTFGSLITAAYSSVLSGSYLLQQILAMVKKAGLLSDLYVGSALVSGFAR 243
+G R P EYTFGSL+T A S LL+QI+ ++K+GLL+DL+VGS LVS FA+
Sbjct: 200 DGSR----PTEYTFGSLVTTACSLTEPDVRLLEQIMCTIQKSGLLTDLFVGSGLVSAFAK 255
Query: 244 LGNFYYARKIFEQMIQKNVVSMNGLMEGR------------------------------- 272
G+ YARK+F QM +N V++NGLM G
Sbjct: 256 SGSLSYARKVFNQMETRNAVTLNGLMVGLVRQKWGEEATKLFMDMNSMIDVSPESYVILL 315
Query: 273 --------------RKGKEVHGYLIRSGLFD-MVAVGNGLVNMYAKCGTIDDSRSVFRFM 317
+KG+EVHG++I +GL D MV +GNGLVNMYAKCG+I D+R VF FM
Sbjct: 316 SSFPEYSLAEEVGLKKGREVHGHVITTGLVDFMVGIGNGLVNMYAKCGSIADARRVFYFM 375
Query: 318 IGKDSVSWNTMISGLDQNGCYEEAIMNFCAMRRDGLMSSNFSLISTLSSCASLGWIMLGQ 377
KDSVSWN+MI+GLDQNGC+ EA+ + +MRR ++ +F+LIS+LSSCASL W LGQ
Sbjct: 376 TDKDSVSWNSMITGLDQNGCFIEAVERYKSMRRHDILPGSFTLISSLSSCASLKWAKLGQ 435
Query: 378 QIHGEGLKLGLDSDVSVSNALLSLYADAGYLSRCLKVFFLMPEHDQVSWNSVIGAFADSE 437
QIHGE LKLG+D +VSVSNAL++LYA+ GYL+ C K+F MPEHDQVSWNS+IGA A SE
Sbjct: 436 QIHGESLKLGIDLNVSVSNALMTLYAETGYLNECRKIFSSMPEHDQVSWNSIIGALARSE 495
Query: 438 ALVSEAVKYYLDMRRAGWSPNGVTFINILAAASSFSMGKLGHQVHAQVIKYNVANETTIE 497
+ EAV +L+ +RAG N +TF ++L+A SS S G+LG Q+H +K N+A+E T E
Sbjct: 496 RSLPEAVVCFLNAQRAGQKLNRITFSSVLSAVSSLSFGELGKQIHGLALKNNIADEATTE 555
Query: 498 NALLSCYGKCGEMDDCEKIFARMSERRDEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQ 557
NAL++CYGKCGEMD CEKIF+RM+ERRD V+WNSMISGYIHNELL KA++LVWFM+Q GQ
Sbjct: 556 NALIACYGKCGEMDGCEKIFSRMAERRDNVTWNSMISGYIHNELLAKALDLVWFMLQTGQ 615
Query: 558 RLDHFTFATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASR 617
RLD F +ATVLSA ASVATLERGMEVHAC VRACLE DVV+GSALVDMYSKCGR+DYA R
Sbjct: 616 RLDSFMYATVLSAFASVATLERGMEVHACSVRACLESDVVVGSALVDMYSKCGRLDYALR 675
Query: 618 FFDLMPVRNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPL-PDHVTFVGVLSACSHAG 676
FF+ MPVRN YSWNSMISGYARHG G++AL LF MKLDG PDHVTFVGVLSACSHAG
Sbjct: 676 FFNTMPVRNSYSWNSMISGYARHGQGEEALKLFETMKLDGQTPPDHVTFVGVLSACSHAG 735
Query: 677 LVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKMPITPNSLIWRTV 736
L++EGFKHF+SMS YGL P++E FSCM D+LGRAGELDK+E+FI KMP+ PN LIWRTV
Sbjct: 736 LLEEGFKHFESMSDSYGLAPRIEHFSCMADVLGRAGELDKLEDFIEKMPMKPNVLIWRTV 795
Query: 737 LGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMKEAE 796
LGACCRAN RK ELG+KAA MLF++EP+NAVNYVLL NMYA+GG+WED+ KARK MK+A+
Sbjct: 796 LGACCRANGRKAELGKKAAEMLFQLEPENAVNYVLLGNMYAAGGRWEDLVKARKKMKDAD 855
Query: 797 VKKEAGCSWVTMKDGVHVFVAGDESHPEKDLIYEKLKELNQKMRDAGYVPQTKFALFDLE 856
VKKEAG SWVTMKDGVH+FVAGD+SHP+ D+IY+KLKELN+KMRDAGYVPQT FAL+DLE
Sbjct: 856 VKKEAGYSWVTMKDGVHMFVAGDKSHPDADVIYKKLKELNRKMRDAGYVPQTGFALYDLE 915
Query: 857 PESKEDLVSYHSEKIAVAFVLT--RNSKLPIRIMKNLRVCGDCHSAFKFISKIVGREIVL 914
E+KE+++SYHSEK+AVAFVL R+S LPIRIMKNLRVCGDCHSAFK+ISKI GR+I+L
Sbjct: 916 QENKEEILSYHSEKLAVAFVLAAQRSSTLPIRIMKNLRVCGDCHSAFKYISKIEGRQIIL 975
Query: 915 RDSNRFHHFNDGKCSCGDYW 934
RDSNRFHHF DG CSC D+W
Sbjct: 976 RDSNRFHHFQDGACSCSDFW 995
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297811097|ref|XP_002873432.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297319269|gb|EFH49691.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1206 bits (3119), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 600/980 (61%), Positives = 725/980 (73%), Gaps = 78/980 (7%)
Query: 4 AKLFHLQILKHGFAYDVFLCNTLINVYVRVGDLASASKLFDEMPDRNSVSWACIVSGYTH 63
AKLFH ++ K+G DV+LCN LIN Y+ GD SA K+FDEMP RN VSWAC+VSGY+
Sbjct: 20 AKLFHSRLYKNGLEKDVYLCNNLINAYLETGDSVSARKVFDEMPLRNCVSWACVVSGYSR 79
Query: 64 KGMSNEACKMFKEMVRAGFLLNRYALGSVLRACQECGPSGFKFGMQVHCLVLKSNQTFDG 123
G EA ++MV+ G N YA S LRACQE G FG Q+H L+ K + D
Sbjct: 80 NGEHKEALVFLRDMVKEGVFSNHYAFVSALRACQELDSVGILFGRQIHGLLFKLSYAVDA 139
Query: 124 LVSNVLIAMYGSCLESTDCARRIFEEIETRDLISWNSIISVYSQRGDTISVFKLFSRMQR 183
+VSNVLI+MY C S A R F++++ ++ +SWNSIISVYSQ GD FK+F MQ
Sbjct: 140 VVSNVLISMYWKCGGSLGYALRAFDDVQVKNSVSWNSIISVYSQTGDQRFAFKMFYSMQC 199
Query: 184 EGFRYSLKPNEYTFGSLITAAYSSVLSGSYLLQQILAMVKKAGLLSDLYVGSALVSGFAR 243
+G R P EYTFGSL+T A S LL+QI+ ++K+G L+DL+VGS LVS FA+
Sbjct: 200 DGSR----PTEYTFGSLVTTACSLTEPDVRLLEQIMCTIQKSGFLTDLFVGSGLVSAFAK 255
Query: 244 LGNFYYARKIFEQMIQKNVVSMNGLMEGR------------------------------- 272
G+ +ARKIF QM +N V++NGLM G
Sbjct: 256 SGSLIHARKIFNQMETRNAVTLNGLMVGLVRQKWGEEATKLFMDMNSMIDVSPESYVILL 315
Query: 273 --------------RKGKEVHGYLIRSGLFD-MVAVGNGLVNMYAKCGTIDDSRSVFRFM 317
+KG+EVHG++I +GL D MV +GNGLVNMYAKCG+I D+R VF FM
Sbjct: 316 SSFPEYSLAEEVGLKKGREVHGHVITTGLVDFMVGIGNGLVNMYAKCGSIADARRVFCFM 375
Query: 318 IGKDSVSWNTMISGLDQNGCYEEAIMNFCAMRRDGLMSSNFSLISTLSSCASLGWIMLGQ 377
KDSVSWN+MI+GLDQN C+ EA+ + +MRR ++ +F+LIS++SSCASL W LGQ
Sbjct: 376 TEKDSVSWNSMITGLDQNSCFIEAVERYQSMRRHEILPGSFTLISSISSCASLKWAKLGQ 435
Query: 378 QIHGEGLKLGLDSDVSVSNALLSLYADAGYLSRCLKVFFLMPEHDQVSWNSVIGAFADSE 437
QIHGE LKLG+D +VSVSNAL++LYA+ G L+ C K+F MPEHDQVSWNS+IGA A SE
Sbjct: 436 QIHGESLKLGIDLNVSVSNALMTLYAETGCLNECRKIFSSMPEHDQVSWNSIIGALASSE 495
Query: 438 ALVSEAVKYYLDMRRAGWSPNGVTFINILAAASSFSMGKLGHQVHAQVIKYNVANETTIE 497
+ EAV +L+ RAG N +TF ++L+A SS S G+LG Q+H +KYN+A+E T E
Sbjct: 496 RSLPEAVACFLNALRAGQKLNRITFSSVLSAVSSLSFGELGKQIHGLALKYNIADEATTE 555
Query: 498 NALLSCYGKCGEMDDCEKIFARMSERRDEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQ 557
NAL++CYGKCGEMD CEKIF+RMSERRD+V+WNSMISGYIHNELL KA++LVWFMMQ GQ
Sbjct: 556 NALIACYGKCGEMDGCEKIFSRMSERRDDVTWNSMISGYIHNELLAKALDLVWFMMQTGQ 615
Query: 558 RLDHFTFATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASR 617
RLD F +ATVLSA ASVATLERGMEVHAC VRACLE DVV+GSALVDMYSKCGR+DYA R
Sbjct: 616 RLDSFMYATVLSAFASVATLERGMEVHACSVRACLESDVVVGSALVDMYSKCGRLDYALR 675
Query: 618 FFDLMPVRNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPL-PDHVTFVGVLSACSHAG 676
FF+ MP LF+ MKLDG PDHVTFVGVLSACSHAG
Sbjct: 676 FFNTMP-------------------------LFANMKLDGQTPPDHVTFVGVLSACSHAG 710
Query: 677 LVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKMPITPNSLIWRTV 736
L++EGFKHF+SMS YGL P++E FSCM DLLGRAGELDK+E+FI KMP+ PN LIWRTV
Sbjct: 711 LLEEGFKHFESMSDSYGLAPRIEHFSCMADLLGRAGELDKLEDFIEKMPMKPNVLIWRTV 770
Query: 737 LGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMKEAE 796
LGACCRAN RK ELG+KAA MLF++EP+NAVNYVLL NMYA+GG+WED+ KARK MK+A+
Sbjct: 771 LGACCRANGRKAELGKKAAEMLFQLEPENAVNYVLLGNMYAAGGRWEDLVKARKKMKDAD 830
Query: 797 VKKEAGCSWVTMKDGVHVFVAGDESHPEKDLIYEKLKELNQKMRDAGYVPQTKFALFDLE 856
VKKEAG SWVTMKDGVH+FVAGD+SHP+ D+IY+KLKELN+KMRDAGYVPQT FAL+DLE
Sbjct: 831 VKKEAGYSWVTMKDGVHMFVAGDKSHPDADVIYKKLKELNRKMRDAGYVPQTGFALYDLE 890
Query: 857 PESKEDLVSYHSEKIAVAFVLT--RNSKLPIRIMKNLRVCGDCHSAFKFISKIVGREIVL 914
E+KE+++SYHSEK+AVAFVL R+S LPIRIMKNLRVCGDCHSAFK ISKI GR+I+L
Sbjct: 891 QENKEEILSYHSEKLAVAFVLAAQRSSTLPIRIMKNLRVCGDCHSAFKHISKIEGRQIIL 950
Query: 915 RDSNRFHHFNDGKCSCGDYW 934
RDSNRFHHF DG+CSC D+W
Sbjct: 951 RDSNRFHHFQDGECSCSDFW 970
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224107052|ref|XP_002333576.1| predicted protein [Populus trichocarpa] gi|222837227|gb|EEE75606.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1115 bits (2885), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 537/756 (71%), Positives = 621/756 (82%), Gaps = 43/756 (5%)
Query: 222 VKKAGLLSDLYVGSALVSGFARLGNFYYARKIFEQMIQKNVVSMNGLMEG---------- 271
V K G SDL++ + L++ + R+G+ ARK+F++M +N V+ L+ G
Sbjct: 26 VLKHGFDSDLFLCNTLINVYVRIGDCVSARKLFDEMPDRNGVTWACLISGYTQNGMPEDA 85
Query: 272 --------------------------------RRKGKEVHGYLIRSGLFDM-VAVGNGLV 298
RRKG++VHGY IR+GL D VAVGNGL+
Sbjct: 86 CGVLKEMIFEGFLPNRFAFGSAIRACQESMLWRRKGRQVHGYAIRTGLNDAKVAVGNGLI 145
Query: 299 NMYAKCGTIDDSRSVFRFMIGKDSVSWNTMISGLDQNGCYEEAIMNFCAMRRDGLMSSNF 358
NMYAKCG ID +RSVF M+ KDSVSWN+MI+GLDQN C+E+A+ ++ +MR+ GLM SNF
Sbjct: 146 NMYAKCGDIDHARSVFGLMVDKDSVSWNSMITGLDQNKCFEDAVKSYNSMRKTGLMPSNF 205
Query: 359 SLISTLSSCASLGWIMLGQQIHGEGLKLGLDSDVSVSNALLSLYADAGYLSRCLKVFFLM 418
+LIS LSSCASLG I+LGQQ HGEG+KLGLD DVSVSN LL+LYA+ L+ C KVF M
Sbjct: 206 ALISALSSCASLGCILLGQQTHGEGIKLGLDMDVSVSNTLLALYAETSRLAECQKVFSWM 265
Query: 419 PEHDQVSWNSVIGAFADSEALVSEAVKYYLDMRRAGWSPNGVTFINILAAASSFSMGKLG 478
E DQVSWN+VIGA ADS A VSEA++ +L+M RAGWSPN VTFIN+LA SS S KL
Sbjct: 266 LERDQVSWNTVIGALADSGASVSEAIEVFLEMMRAGWSPNRVTFINLLATVSSLSTSKLS 325
Query: 479 HQVHAQVIKYNVANETTIENALLSCYGKCGEMDDCEKIFARMSERRDEVSWNSMISGYIH 538
HQ+HA ++KYNV ++ IENALL+CYGK GEM++CE+IF+RMSERRDEVSWNSMISGYIH
Sbjct: 326 HQIHALILKYNVKDDNAIENALLACYGKSGEMENCEEIFSRMSERRDEVSWNSMISGYIH 385
Query: 539 NELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVATLERGMEVHACGVRACLEFDVVI 598
NELL KAM+LVW MMQRGQRLD FTFATVLSACA+VATLE GMEVHAC +RACLE DVVI
Sbjct: 386 NELLCKAMDLVWLMMQRGQRLDCFTFATVLSACATVATLECGMEVHACAIRACLESDVVI 445
Query: 599 GSALVDMYSKCGRIDYASRFFDLMPVRNVYSWNSMISGYARHGHGDKALTLFSQMKLDGP 658
GSALVDMYSKCGRIDYASRFF+LMPVRN+YSWNSMISGYARHGHGD AL LF++MKL G
Sbjct: 446 GSALVDMYSKCGRIDYASRFFNLMPVRNLYSWNSMISGYARHGHGDNALRLFTRMKLSGQ 505
Query: 659 LPDHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIE 718
LPDH+TFVGVLSACSH GLVDEGF++FKSM++VYGL+P++E +SCMVDLLGRAGELDKIE
Sbjct: 506 LPDHITFVGVLSACSHIGLVDEGFEYFKSMTEVYGLVPRVEHYSCMVDLLGRAGELDKIE 565
Query: 719 EFINKMPITPNSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYAS 778
FINKMPI PN LIWRTVLGACCR N RKTELGR+AA MLF M+PQNAVNYVLL+NMYAS
Sbjct: 566 NFINKMPIKPNILIWRTVLGACCRGNGRKTELGRRAAEMLFNMDPQNAVNYVLLSNMYAS 625
Query: 779 GGKWEDVAKARKAMKEAEVKKEAGCSWVTMKDGVHVFVAGDESHPEKDLIYEKLKELNQK 838
GGKWED+A+ R+AM+EA VKKEAGCSWVTMKDGVHVFVAGD SHPEK LIY KLKEL++K
Sbjct: 626 GGKWEDMARTRRAMREAAVKKEAGCSWVTMKDGVHVFVAGDNSHPEKGLIYAKLKELDKK 685
Query: 839 MRDAGYVPQTKFALFDLEPESKEDLVSYHSEKIAVAFVLTRNSKLPIRIMKNLRVCGDCH 898
+RDAGYVPQ KFAL+DLEPE+KE+L+SYHSEK+AVAFVLTRNS LPIRIMKNLRVCGDCH
Sbjct: 686 IRDAGYVPQIKFALYDLEPENKEELLSYHSEKLAVAFVLTRNSGLPIRIMKNLRVCGDCH 745
Query: 899 SAFKFISKIVGREIVLRDSNRFHHFNDGKCSCGDYW 934
SAFK+ISK+V R IVLRDSNRFHHF DGKCSC DYW
Sbjct: 746 SAFKYISKVVDRSIVLRDSNRFHHFEDGKCSCRDYW 781
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224121748|ref|XP_002330643.1| predicted protein [Populus trichocarpa] gi|222872247|gb|EEF09378.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1061 bits (2744), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 520/767 (67%), Positives = 605/767 (78%), Gaps = 45/767 (5%)
Query: 46 MPDRNSVSWACIVSGYTHKGMSNEACKMFKEMVRAGFLLNRYALGSVLRACQECGPSGFK 105
MPDRN V+WAC++SGYT GM ++AC + KEM+ GFL NR+A GS +RACQE G +
Sbjct: 1 MPDRNGVTWACLISGYTQNGMPDDACGVLKEMIFEGFLPNRFAFGSAIRACQESMLCGLQ 60
Query: 106 FGMQVHCLVLKSNQTFDGLVSNVLIAMYGSCLESTDCARRIFEEIETRDLISWNSIISVY 165
GMQ+H L+LKS D + NVLI+MYG L D AR +F+EIE R+ I WNSI+SVY
Sbjct: 61 LGMQIHGLILKSPYANDASLCNVLISMYGKYLGYIDYARSVFDEIEIRNSIYWNSIVSVY 120
Query: 166 SQRGDTISVFKLFSRMQREGFRYSLKPNEYTFGSLITAAYSSVLSGSYLLQQILAMVKKA 225
SQRGD S F+LFS MQ SLKPNEYTFGSLITAA SSV SG LL QILA +KK+
Sbjct: 121 SQRGDAASCFELFSSMQMADSGLSLKPNEYTFGSLITAACSSVDSGLSLLGQILARIKKS 180
Query: 226 GLLSDLYVGSALVSGFARLGNFYYARKIFEQMIQKNVVSMNGLM---------------- 269
GLL++LYVGSAL GF+RLG+F YARKIFEQM +N VSMNGLM
Sbjct: 181 GLLANLYVGSALAGGFSRLGSFDYARKIFEQMTARNAVSMNGLMVGLVRQKCGEEAVEVF 240
Query: 270 ----------------------------EGRRKGKEVHGYLIRSGLFDM-VAVGNGLVNM 300
EGRRKG+EVHGY IR+GL D VAVGNGL+NM
Sbjct: 241 KETRHLVDINVDSYVILLSACAEFALLDEGRRKGREVHGYAIRTGLNDAKVAVGNGLINM 300
Query: 301 YAKCGTIDDSRSVFRFMIGKDSVSWNTMISGLDQNGCYEEAIMNFCAMRRDGLMSSNFSL 360
YAKCG ID +RSVF M+ KDSVSWN+MI+GLDQN C+E+A+ ++ +MR+ GLM SNF+L
Sbjct: 301 YAKCGDIDHARSVFGLMVDKDSVSWNSMITGLDQNKCFEDAVKSYNSMRKTGLMPSNFTL 360
Query: 361 ISTLSSCASLGWIMLGQQIHGEGLKLGLDSDVSVSNALLSLYADAGYLSRCLKVFFLMPE 420
IS LSSCASLG I+LGQQ HGEG+KLGLD DVSVSN LL+LYA+ G+L+ C KVF M E
Sbjct: 361 ISALSSCASLGCILLGQQTHGEGIKLGLDMDVSVSNTLLALYAETGHLAECQKVFSWMLE 420
Query: 421 HDQVSWNSVIGAFADSEALVSEAVKYYLDMRRAGWSPNGVTFINILAAASSFSMGKLGHQ 480
DQVSWN+VIGA ADS A VSEA++ +L+M RAGWSPN VTFIN+LA SS S KL HQ
Sbjct: 421 RDQVSWNTVIGALADSGASVSEAIEVFLEMMRAGWSPNRVTFINLLATVSSLSTSKLSHQ 480
Query: 481 VHAQVIKYNVANETTIENALLSCYGKCGEMDDCEKIFARMSERRDEVSWNSMISGYIHNE 540
+HA ++KYNV ++ IENALL+CYGK GEM++CE+IF+RMSERRDEVSWNSMISGYIHN+
Sbjct: 481 IHALILKYNVKDDNAIENALLACYGKSGEMENCEEIFSRMSERRDEVSWNSMISGYIHND 540
Query: 541 LLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVATLERGMEVHACGVRACLEFDVVIGS 600
LL KAM+LVW MMQRGQRLD FTFATVLSACA+VATLERGMEVHAC +RACLE DVVIGS
Sbjct: 541 LLCKAMDLVWLMMQRGQRLDCFTFATVLSACATVATLERGMEVHACAIRACLESDVVIGS 600
Query: 601 ALVDMYSKCGRIDYASRFFDLMPVRNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLP 660
ALVDMYSKCGRIDYASRFF+LMP+RN+YSWNSMISGYARHG+GD AL LF++MKL G LP
Sbjct: 601 ALVDMYSKCGRIDYASRFFNLMPMRNLYSWNSMISGYARHGYGDNALRLFTRMKLSGQLP 660
Query: 661 DHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEF 720
DH+TFVGVLSACSH GLVDEGF++FKSM++VYGL+P++E +SCMVDLLGRAGELDKI+ F
Sbjct: 661 DHITFVGVLSACSHIGLVDEGFEYFKSMTEVYGLVPRVEHYSCMVDLLGRAGELDKIDNF 720
Query: 721 INKMPITPNSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAV 767
INKMPI PN LIWRTVLGACCR N RKTELGR+AA MLF M+PQNAV
Sbjct: 721 INKMPIKPNILIWRTVLGACCRGNGRKTELGRRAAEMLFNMDPQNAV 767
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|414881621|tpg|DAA58752.1| TPA: hypothetical protein ZEAMMB73_723286 [Zea mays] | Back alignment and taxonomy information |
|---|
Score = 1036 bits (2679), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 523/978 (53%), Positives = 689/978 (70%), Gaps = 52/978 (5%)
Query: 7 FHLQILKHGFAYDVFLCNTLINVYVRVGDLASASKLFDEMPDRNSVSWACIVSGYTHKGM 66
H++++K G +D+FLCN L+N Y + LA+AS++FDEMP+RN+VSW C+VSGY G+
Sbjct: 83 LHVELIKRGLNHDLFLCNHLVNSYAKGARLAAASQVFDEMPERNAVSWTCLVSGYVLHGI 142
Query: 67 SNEACKMFKEMVR---AGFLLNRYALGSVLRACQECGPSGFKFGMQVHCLVLKSNQTFDG 123
+ EA ++F+ M+R AG + G++LRACQ+ GP F +QVH LV K+ +
Sbjct: 143 AEEAFRVFRAMLREVQAGCRPTSFTFGTLLRACQDGGPDRLGFAVQVHGLVSKTEYASNT 202
Query: 124 LVSNVLIAMYGSCLESTDC-ARRIFEEIETRDLISWNSIISVYSQRGDTISVFKLFSRMQ 182
V N LI+MYGSC A+R+F+ RDLI+WN+++SVY+++GD S F LF MQ
Sbjct: 203 TVCNALISMYGSCTVGPPILAQRVFDGTPIRDLITWNALMSVYAKKGDVASTFTLFKDMQ 262
Query: 183 REGFRYSLKPNEYTFGSLITAAYSSVLSGSYLLQQILAMVKKAGLLSDLYVGSALVSGFA 242
R R L+P E+TFGSLITAA S S S +L Q+L V K+G SDLYVGSALVS FA
Sbjct: 263 RGDSRIQLRPTEHTFGSLITAASLSSGS-SAVLDQVLVWVLKSGCSSDLYVGSALVSAFA 321
Query: 243 RLGNFYYARKIFEQMIQKNVVSMNGLM--------------------------------- 269
R G A+ IF + QKN V++NGL+
Sbjct: 322 RHGLTDEAKDIFLSLKQKNAVTLNGLIVGLVRQDFSEEAVKIFVGTRNTVDVNADTYVVL 381
Query: 270 -----------EGRRKGKEVHGYLIRSGLFDM-VAVGNGLVNMYAKCGTIDDSRSVFRFM 317
EG R G+ VHG+++R+GL D+ +AV NGLVNMYAKCG I+ + +F+ M
Sbjct: 382 LSALAEYSISEEGLRIGRVVHGHMLRTGLTDLKIAVSNGLVNMYAKCGAIESASKIFQLM 441
Query: 318 IGKDSVSWNTMISGLDQNGCYEEAIMNFCAMRRDGLMSSNFSLISTLSSCASLGWIMLGQ 377
D +SWNT+IS LDQNG EEA+M++ MR+ + SNF+LIS+LSSCA L + GQ
Sbjct: 442 EATDRISWNTIISALDQNGNCEEAVMHYSLMRQSCISPSNFALISSLSSCAGLKLLTAGQ 501
Query: 378 QIHGEGLKLGLDSDVSVSNALLSLYADAGYLSRCLKVFFLMPEHDQVSWNSVIGAFADSE 437
Q+H + +K GLD D SVSN L+ +Y + G +S KVF M EHD+VSWN+++G A S+
Sbjct: 502 QVHCDAVKWGLDLDTSVSNVLVKMYGECGAMSDYWKVFNSMAEHDEVSWNTMMGVMASSQ 561
Query: 438 ALVSEAVKYYLDMRRAGWSPNGVTFINILAAASSFSMGKLGHQVHAQVIKYNVANETTIE 497
+SE VK + +M R G PN VTFIN+LAA S S+ +LG QVHA V+K+ V + ++
Sbjct: 562 TPISEIVKVFNNMMRGGLIPNKVTFINLLAALSPLSVLELGKQVHAAVMKHGVMEDNVVD 621
Query: 498 NALLSCYGKCGEMDDCEKIFARMSERRDEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQ 557
NAL+SCY K G+M CE +F MS+RRD +SWNSMISGYI+N L +AM+ VW M+ GQ
Sbjct: 622 NALISCYAKSGDMGSCEHLFTNMSDRRDAISWNSMISGYIYNGNLQEAMDCVWLMIHSGQ 681
Query: 558 RLDHFTFATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASR 617
+D TF+ +L+ACASVA LERGME+HA G+R+ LE DVV+ SALVDMYSKCGR+DYAS+
Sbjct: 682 IMDCCTFSIILNACASVAALERGMELHAFGIRSHLESDVVVESALVDMYSKCGRVDYASK 741
Query: 618 FFDLMPVRNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGL 677
F+ M RN +SWNSMISGYARHG G KA+ +F +M PDHVTFV VLSACSHAGL
Sbjct: 742 LFNSMTQRNEFSWNSMISGYARHGLGRKAIEIFEEMLRSRESPDHVTFVSVLSACSHAGL 801
Query: 678 VDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKMPITPNSLIWRTVL 737
V+ G ++F+ M +G++PQ+E +SC++DLLGRAG++DKI+E+I +MPI PN+LIWRTVL
Sbjct: 802 VERGLEYFEMMPD-HGILPQIEHYSCVIDLLGRAGKIDKIKEYIQRMPIEPNALIWRTVL 860
Query: 738 GACCRA-NCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMKEAE 796
AC ++ + +LGR+A+ +L E+EPQN VNYVL +N +A+ G WED AKAR AM++A
Sbjct: 861 VACRQSKDGSNIDLGREASRVLLEIEPQNPVNYVLASNFHAATGMWEDTAKARTAMRQAT 920
Query: 797 VKKEAGCSWVTMKDGVHVFVAGDESHPEKDLIYEKLKELNQKMRDAGYVPQTKFALFDLE 856
KKEAG SWVT+ DGVH F+AGD SHP IYEKL L Q +R+AGYVP T++AL+DLE
Sbjct: 921 EKKEAGRSWVTLNDGVHTFIAGDRSHPNTKEIYEKLNFLIQNIRNAGYVPLTEYALYDLE 980
Query: 857 PESKEDLVSYHSEKIAVAFVLTRNSKLPIRIMKNLRVCGDCHSAFKFISKIVGREIVLRD 916
E+KE+L+SYHSEK+A+AFVLTR+S PIRIMKNLRVCGDCH AF++IS+++ R+I+LRD
Sbjct: 981 EENKEELLSYHSEKLAIAFVLTRSSSGPIRIMKNLRVCGDCHIAFRYISQMISRQIILRD 1040
Query: 917 SNRFHHFNDGKCSCGDYW 934
S RFHHF DGKCSCGDYW
Sbjct: 1041 SIRFHHFKDGKCSCGDYW 1058
|
Source: Zea mays Species: Zea mays Genus: Zea Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 934 | ||||||
| TAIR|locus:2178188 | 995 | MEF7 "AT5G09950" [Arabidopsis | 0.710 | 0.667 | 0.694 | 0.0 | |
| TAIR|locus:2032840 | 937 | AT1G16480 "AT1G16480" [Arabido | 0.716 | 0.713 | 0.36 | 2.4e-155 | |
| TAIR|locus:2038603 | 868 | AT2G27610 "AT2G27610" [Arabido | 0.699 | 0.752 | 0.389 | 4e-151 | |
| TAIR|locus:2125899 | 990 | AT4G33170 [Arabidopsis thalian | 0.975 | 0.920 | 0.344 | 3.3e-143 | |
| TAIR|locus:505006130 | 970 | AT1G18485 [Arabidopsis thalian | 0.700 | 0.674 | 0.352 | 8.4e-136 | |
| TAIR|locus:2183931 | 822 | AT5G13230 [Arabidopsis thalian | 0.699 | 0.794 | 0.374 | 4.6e-135 | |
| TAIR|locus:2103483 | 890 | OTP84 "ORGANELLE TRANSCRIPT PR | 0.706 | 0.741 | 0.377 | 1.4e-133 | |
| TAIR|locus:2148101 | 850 | AT5G16860 "AT5G16860" [Arabido | 0.579 | 0.636 | 0.383 | 2.9e-133 | |
| TAIR|locus:2202074 | 809 | CRR22 "CHLORORESPIRATORY REDUC | 0.748 | 0.864 | 0.375 | 4.8e-131 | |
| TAIR|locus:2082886 | 850 | EMB2261 "embryo defective 2261 | 0.826 | 0.908 | 0.363 | 1.2e-129 |
| TAIR|locus:2178188 MEF7 "AT5G09950" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2500 (885.1 bits), Expect = 0., Sum P(2) = 0.
Identities = 464/668 (69%), Positives = 548/668 (82%)
Query: 271 GRRKGKEVHGYLIRSGLFD-MVAVGNGLVNMYAKCGTIDDSRSVFRFMIGKDSVSWNTMI 329
G +KG+EVHG++I +GL D MV +GNGLVNMYAKCG+I D+R VF FM KDSVSWN+MI
Sbjct: 328 GLKKGREVHGHVITTGLVDFMVGIGNGLVNMYAKCGSIADARRVFYFMTDKDSVSWNSMI 387
Query: 330 SGLDQNGCYEEAIMNFCAMRRDGLMXXXXXXXXXXXXCASLGWIMLGQQIHGEGLKLGLD 389
+GLDQNGC+ EA+ + +MRR ++ CASL W LGQQIHGE LKLG+D
Sbjct: 388 TGLDQNGCFIEAVERYKSMRRHDILPGSFTLISSLSSCASLKWAKLGQQIHGESLKLGID 447
Query: 390 SDVSVSNALLSLYADAGYLSRCLKVFFLMPEHDQVSWNSVIGAFADSEALVSEAVKYYLD 449
+VSVSNAL++LYA+ GYL+ C K+F MPEHDQVSWNS+IGA A SE + EAV +L+
Sbjct: 448 LNVSVSNALMTLYAETGYLNECRKIFSSMPEHDQVSWNSIIGALARSERSLPEAVVCFLN 507
Query: 450 MRRAGWSPNGVTFINILAAASSFSMGKLGHQVHAQVIKYNVANETTIENALLSCYGKCGE 509
+RAG N +TF ++L+A SS S G+LG Q+H +K N+A+E T ENAL++CYGKCGE
Sbjct: 508 AQRAGQKLNRITFSSVLSAVSSLSFGELGKQIHGLALKNNIADEATTENALIACYGKCGE 567
Query: 510 MDDCEKIFARMSERRDEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLS 569
MD CEKIF+RM+ERRD V+WNSMISGYIHNELL KA++LVWFM+Q GQRLD F +ATVLS
Sbjct: 568 MDGCEKIFSRMAERRDNVTWNSMISGYIHNELLAKALDLVWFMLQTGQRLDSFMYATVLS 627
Query: 570 ACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPVRNVYS 629
A ASVATLERGMEVHAC VRACLE DVV+GSALVDMYSKCGR+DYA RFF+ MPVRN YS
Sbjct: 628 AFASVATLERGMEVHACSVRACLESDVVVGSALVDMYSKCGRLDYALRFFNTMPVRNSYS 687
Query: 630 WNSMISGYARHGHGDKALTLFSQMKLDGPLP-DHVTFVGVLSACSHAGLVDEGFKHFKSM 688
WNSMISGYARHG G++AL LF MKLDG P DHVTFVGVLSACSHAGL++EGFKHF+SM
Sbjct: 688 WNSMISGYARHGQGEEALKLFETMKLDGQTPPDHVTFVGVLSACSHAGLLEEGFKHFESM 747
Query: 689 SQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKMPITPNSLIWRTVLGACCRANCRKT 748
S YGL P++E FSCM D+LGRAGELDK+E+FI KMP+ PN LIWRTVLGACCRAN RK
Sbjct: 748 SDSYGLAPRIEHFSCMADVLGRAGELDKLEDFIEKMPMKPNVLIWRTVLGACCRANGRKA 807
Query: 749 ELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVXXXXXXXXXXXXXXXXGCSWVTM 808
ELG+KAA MLF++EP+NAVNYVLL NMYA+GG+WED+ G SWVTM
Sbjct: 808 ELGKKAAEMLFQLEPENAVNYVLLGNMYAAGGRWEDLVKARKKMKDADVKKEAGYSWVTM 867
Query: 809 KDGVHVFVAGDESHPEKDLIYEKLKELNQKMRDAGYVPQTKFALFDLEPESKEDLVSYHS 868
KDGVH+FVAGD+SHP+ D+IY+KLKELN+KMRDAGYVPQT FAL+DLE E+KE+++SYHS
Sbjct: 868 KDGVHMFVAGDKSHPDADVIYKKLKELNRKMRDAGYVPQTGFALYDLEQENKEEILSYHS 927
Query: 869 EKIAVAFVLT--RNSKLPIRIMKNLRVCGDCHSAFKFISKIVGREIVLRDSNRFHHFNDG 926
EK+AVAFVL R+S LPIRIMKNLRVCGDCHSAFK+ISKI GR+I+LRDSNRFHHF DG
Sbjct: 928 EKLAVAFVLAAQRSSTLPIRIMKNLRVCGDCHSAFKYISKIEGRQIILRDSNRFHHFQDG 987
Query: 927 KCSCGDYW 934
CSC D+W
Sbjct: 988 ACSCSDFW 995
|
|
| TAIR|locus:2032840 AT1G16480 "AT1G16480" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1194 (425.4 bits), Expect = 2.4e-155, Sum P(2) = 2.4e-155
Identities = 243/675 (36%), Positives = 390/675 (57%)
Query: 262 VVSMNGLMEGRRKGKEVHGYLIRSGLFDMVAVGNGLVNMYAKCGTIDDSRSVFRFMIGKD 321
++S+ G ++ ++ G+ +HG +++ G +V V N L+ MYA G ++ VF+ M KD
Sbjct: 267 LLSVLGHVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTKD 326
Query: 322 SVSWNTMISGLDQNGCYEEAIMNFCAMRRDGLMXXXXXXXXXXXXCASLGWIMLGQQIHG 381
+SWN++++ +G +A+ C+M G C + + G+ +HG
Sbjct: 327 LISWNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEKGRILHG 386
Query: 382 EGLKLGLDSDVSVSNALLSLYADAGYLSRCLKVFFLMPEHDQVSWNSVIGAFADSEALVS 441
+ GL + + NAL+S+Y G +S +V MP D V+WN++IG +A+ E
Sbjct: 387 LVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIGGYAEDED-PD 445
Query: 442 EAVKYYLDMRRAGWSPNGVTFINILAAAS-SFSMGKLGHQVHAQVIKYNVANETTIENAL 500
+A+ + MR G S N +T +++L+A + + G +HA ++ ++ ++N+L
Sbjct: 446 KALAAFQTMRVEGVSSNYITVVSVLSACLLPGDLLERGKPLHAYIVSAGFESDEHVKNSL 505
Query: 501 LSCYGKCGEMDDCEKIFARMSERRDEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLD 560
++ Y KCG++ + +F + + R+ ++WN+M++ H+ + + LV M G LD
Sbjct: 506 ITMYAKCGDLSSSQDLFNGL-DNRNIITWNAMLAANAHHGHGEEVLKLVSKMRSFGVSLD 564
Query: 561 HFTFATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFD 620
F+F+ LSA A +A LE G ++H V+ E D I +A DMYSKCG I +
Sbjct: 565 QFSFSEGLSAAAKLAVLEEGQQLHGLAVKLGFEHDSFIFNAAADMYSKCGEIGEVVKMLP 624
Query: 621 LMPVRNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDE 680
R++ SWN +IS RHG+ ++ F +M G P HVTFV +L+ACSH GLVD+
Sbjct: 625 PSVNRSLPSWNILISALGRHGYFEEVCATFHEMLEMGIKPGHVTFVSLLTACSHGGLVDK 684
Query: 681 GFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKMPITPNSLIWRTVLGAC 740
G ++ +++ +GL P +E C++DLLGR+G L + E FI+KMP+ PN L+WR++L A
Sbjct: 685 GLAYYDMIARDFGLEPAIEHCICVIDLLGRSGRLAEAETFISKMPMKPNDLVWRSLL-AS 743
Query: 741 CRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVXXXXXXXXXXXXXXX 800
C+ + + GRKAA L ++EP++ YVL +NM+A+ G+WEDV
Sbjct: 744 CKIH-GNLDRGRKAAENLSKLEPEDDSVYVLSSNMFATTGRWEDVENVRKQMGFKNIKKK 802
Query: 801 XGCSWVTMKDGVHVFVAGDESHPEKDLIYEKLKELNQKMRDAGYVPQTKFALFDLEPESK 860
CSWV +KD V F GD +HP+ IY KL+++ + ++++GYV T AL D + E K
Sbjct: 803 QACSWVKLKDKVSSFGIGDRTHPQTMEIYAKLEDIKKLIKESGYVADTSQALQDTDEEQK 862
Query: 861 EDLVSYHSEKIAVAFVLTRNSK-LPIRIMKNLRVCGDCHSAFKFISKIVGREIVLRDSNR 919
E + HSE++A+A+ L + +RI KNLR+C DCHS +KF+S+++GR IVLRD R
Sbjct: 863 EHNLWNHSERLALAYALMSTPEGSTVRIFKNLRICSDCHSVYKFVSRVIGRRIVLRDQYR 922
Query: 920 FHHFNDGKCSCGDYW 934
FHHF G CSC DYW
Sbjct: 923 FHHFERGLCSCKDYW 937
|
|
| TAIR|locus:2038603 AT2G27610 "AT2G27610" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1234 (439.4 bits), Expect = 4.0e-151, Sum P(2) = 4.0e-151
Identities = 259/665 (38%), Positives = 394/665 (59%)
Query: 274 KGKEVHGYLIRSGLFDMVAVGNGLVNMYAKCGTIDDSRSVFRFMIGKDSVSWNTMISGLD 333
+G +VH ++++GL + V N L+N+Y KCG + +R +F K V+WN+MISG
Sbjct: 212 RGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYA 271
Query: 334 QNGCYEEAIMNFCAMRRDGLMXXXXXXXXXXXXCASLGWIMLGQQIHGEGLKLGLDSDVS 393
NG EA+ F +MR + + CA+L + +Q+H +K G D +
Sbjct: 272 ANGLDLEALGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQN 331
Query: 394 VSNALLSLYADAGYLSRCLKVFFLMP-EHDQVSWNSVIGAFADSEALVSEAVKYYLDMRR 452
+ AL+ Y+ + L++F + + VSW ++I F ++ EAV + +M+R
Sbjct: 332 IRTALMVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGK-EEAVDLFSEMKR 390
Query: 453 AGWSPNGVTFINILAAASSFSMGKLGHQVHAQVIKYNVANETTIENALLSCYGKCGEMDD 512
G PN T+ IL A S +VHAQV+K N +T+ ALL Y K G++++
Sbjct: 391 KGVRPNEFTYSVILTALPVISPS----EVHAQVVKTNYERSSTVGTALLDAYVKLGKVEE 446
Query: 513 CEKIFARMSERRDEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACA 572
K+F+ + ++ D V+W++M++GY A+ + + + G + + FTF+++L+ CA
Sbjct: 447 AAKVFSGIDDK-DIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCA 505
Query: 573 SV-ATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPVRNVYSWN 631
+ A++ +G + H +++ L+ + + SAL+ MY+K G I+ A F +++ SWN
Sbjct: 506 ATNASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWN 565
Query: 632 SMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGFKHFKSMSQV 691
SMISGYA+HG KAL +F +MK D VTF+GV +AC+HAGLV+EG K+F M +
Sbjct: 566 SMISGYAQHGQAMKALDVFKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRD 625
Query: 692 YGLIPQLEQFSCMVDLLGRAGELDKIEEFINKMPITPNSLIWRTVLGACCRANCRKTELG 751
+ P E SCMVDL RAG+L+K + I MP S IWRT+L AC R + +KTELG
Sbjct: 626 CKIAPTKEHNSCMVDLYSRAGQLEKAMKVIENMPNPAGSTIWRTILAAC-RVH-KKTELG 683
Query: 752 RKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVXXXXXXXXXXXXXXXXGCSWVTMKDG 811
R AA + M+P+++ YVLL+NMYA G W++ G SW+ +K+
Sbjct: 684 RLAAEKIIAMKPEDSAAYVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWIEVKNK 743
Query: 812 VHVFVAGDESHPEKDLIYEKLKELNQKMRDAGYVPQTKFALFDLEPESKEDLVSYHSEKI 871
+ F+AGD SHP KD IY KL++L+ +++D GY P T + L D++ E KE +++ HSE++
Sbjct: 744 TYSFLAGDRSHPLKDQIYMKLEDLSTRLKDLGYEPDTSYVLQDIDDEHKEAVLAQHSERL 803
Query: 872 AVAFVLTRNSK-LPIRIMKNLRVCGDCHSAFKFISKIVGREIVLRDSNRFHHFN-DGKCS 929
A+AF L K P+ I+KNLRVCGDCH K I+KI REIV+RDSNRFHHF+ DG CS
Sbjct: 804 AIAFGLIATPKGSPLLIIKNLRVCGDCHLVIKLIAKIEEREIVVRDSNRFHHFSSDGVCS 863
Query: 930 CGDYW 934
CGD+W
Sbjct: 864 CGDFW 868
|
|
| TAIR|locus:2125899 AT4G33170 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1400 (497.9 bits), Expect = 3.3e-143, P = 3.3e-143
Identities = 328/951 (34%), Positives = 505/951 (53%)
Query: 5 KLFHLQILKHGFAYDVFLCNTLINVYVRVGDLASASKLFDEMPDRNSVSWACIVSGYTHK 64
K H +IL + FL N LI++Y + G L A ++FD+MPDR+ VSW I++ Y
Sbjct: 59 KCTHARILTFEENPERFLINNLISMYSKCGSLTYARRVFDKMPDRDLVSWNSILAAYAQS 118
Query: 65 G---MSN--EACKMFKEMVRAGFLLNRYALGSVLRACQECGPSGFKFGMQ-VHCLVLKSN 118
+ N +A +F+ + + +R L +L+ C SG+ + + H K
Sbjct: 119 SECVVENIQQAFLLFRILRQDVVYTSRMTLSPMLKLCLH---SGYVWASESFHGYACKIG 175
Query: 119 QTFDGLVSNVLIAMYGSCLESTDCARRIFEEIETRDLISWNSIISVYSQRGDTISVFKLF 178
D V+ L+ +Y + + + +FEE+ RD++ WN ++ Y + G L
Sbjct: 176 LDGDEFVAGALVNIYLKFGKVKE-GKVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLS 234
Query: 179 SRMQREGFRYSLKPNEYTFGSLITAAYSSVLSGSYLLQQILAMVKKAGLLSDLYVGSALV 238
S G L PNE T L + +G + A A +S++ + +
Sbjct: 235 SAFHSSG----LNPNEITLRLLARISGDDSDAGQV---KSFANGNDASSVSEIIFRNKGL 287
Query: 239 SGFARLGNFYYARKIFEQMIQKNV----VSMNGLMEGRRK------GKEVHGYLIRSGLF 288
S + G + K F M++ +V V+ ++ K G++VH ++ GL
Sbjct: 288 SEYLHSGQYSALLKCFADMVESDVECDQVTFILMLATAVKVDSLALGQQVHCMALKLGLD 347
Query: 289 DMVAVGNGLVNMYAKCGTIDDSRSVFRFMIGKDSVSWNTMISGLDQNGCYEEAIMNFCAM 348
M+ V N L+NMY K +R+VF M +D +SWN++I+G+ QNG EA+ F +
Sbjct: 348 LMLTVSNSLINMYCKLRKFGFARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCLFMQL 407
Query: 349 RRDGLMXXXXXXXXXXXXCASLG-WIMLGQQIHGEGLKLGLDSDVSVSNALLSLYADAGY 407
R GL +SL + L +Q+H +K+ SD VS AL+ Y+
Sbjct: 408 LRCGLKPDQYTMTSVLKAASSLPEGLSLSKQVHVHAIKINNVSDSFVSTALIDAYSR--- 464
Query: 408 LSRCLK---VFFLMPEHDQVSWNSVIGAFADSEALVSEAVKYYLDMRRAGWSPNGVTFIN 464
+RC+K + F D V+WN+++ + S + +K + M + G + T
Sbjct: 465 -NRCMKEAEILFERHNFDLVAWNAMMAGYTQSHD-GHKTLKLFALMHKQGERSDDFTLAT 522
Query: 465 ILAAASSFSMGKLGHQVHAQVIKYNVANETTIENALLSCYGKCGEMDDCEKIFARMSERR 524
+ G QVHA IK + + + +L Y KCG+M + F +
Sbjct: 523 VFKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVP- 581
Query: 525 DEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVATLERGMEVH 584
D+V+W +MISG I N +A ++ M G D FT AT+ A + + LE+G ++H
Sbjct: 582 DDVAWTTMISGCIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIH 641
Query: 585 ACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPVRNVYSWNSMISGYARHGHGD 644
A ++ D +G++LVDMY+KCG ID A F + + N+ +WN+M+ G A+HG G
Sbjct: 642 ANALKLNCTNDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGK 701
Query: 645 KALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCM 704
+ L LF QMK G PD VTF+GVLSACSH+GLV E +KH +SM YG+ P++E +SC+
Sbjct: 702 ETLQLFKQMKSLGIKPDKVTFIGVLSACSHSGLVSEAYKHMRSMHGDYGIKPEIEHYSCL 761
Query: 705 VDLLGRAGELDKIEEFINKMPITPNSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQ 764
D LGRAG + + E I M + ++ ++RT+L AC R TE G++ A L E+EP
Sbjct: 762 ADALGRAGLVKQAENLIESMSMEASASMYRTLLAAC-RVQ-GDTETGKRVATKLLELEPL 819
Query: 765 NAVNYVLLANMYASGGKWEDVXXXXXXXXXXXXXXXXGCSWVTMKDGVHVFVAGDESHPE 824
++ YVLL+NMYA+ KW+++ G SW+ +K+ +H+FV D S+ +
Sbjct: 820 DSSAYVLLSNMYAAASKWDEMKLARTMMKGHKVKKDPGFSWIEVKNKIHIFVVDDRSNRQ 879
Query: 825 KDLIYEKLKELNQKMRDAGYVPQTKFALFDLEPESKEDLVSYHSEKIAVAF-VLTRNSKL 883
+LIY K+K++ + ++ GYVP+T F L D+E E KE + YHSEK+AVAF +L+
Sbjct: 880 TELIYRKVKDMIRDIKQEGYVPETDFTLVDVEEEEKERALYYHSEKLAVAFGLLSTPPST 939
Query: 884 PIRIMKNLRVCGDCHSAFKFISKIVGREIVLRDSNRFHHFNDGKCSCGDYW 934
PIR++KNLRVCGDCH+A K+I+K+ REIVLRD+NRFH F DG CSCGDYW
Sbjct: 940 PIRVIKNLRVCGDCHNAMKYIAKVYNREIVLRDANRFHRFKDGICSCGDYW 990
|
|
| TAIR|locus:505006130 AT1G18485 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1077 (384.2 bits), Expect = 8.4e-136, Sum P(2) = 8.4e-136
Identities = 235/666 (35%), Positives = 369/666 (55%)
Query: 275 GKEVHGYLIRSGLFDMVAVGNGLVNMYAKCGTIDDSRSVFRFMIGKDSVSWNTMISGL-- 332
GK VHG+ ++ L + + N L++MY+KCG I +++ +F+ K+ VSWNTM+ G
Sbjct: 311 GKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSA 370
Query: 333 --DQNGCYEEAIMNFCAMRRDGLMXXXXXXXXXXXXCASLGWIMLGQQIHGEGLKLGLDS 390
D +G ++ + A D + C ++ +++H LK
Sbjct: 371 EGDTHGTFD-VLRQMLAGGED-VKADEVTILNAVPVCFHESFLPSLKELHCYSLKQEFVY 428
Query: 391 DVSVSNALLSLYADAGYLSRCLKVFFLMPEHDQVSWNSVIGAFADSEALVSEAVKYYLDM 450
+ V+NA ++ YA G LS +VF + SWN++IG A S ++ +L M
Sbjct: 429 NELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSND-PRLSLDAHLQM 487
Query: 451 RRAGWSPNGVTFINILAAASSFSMGKLGHQVHAQVIKYNVANETTIENALLSCYGKCGEM 510
+ +G P+ T ++L+A S +LG +VH +I+ + + + ++LS Y CGE+
Sbjct: 488 KISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGEL 547
Query: 511 DDCEKIFARMSERRDEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSA 570
+ +F M E + VSWN++I+GY+ N +A+ + M+ G +L + V A
Sbjct: 548 CTVQALFDAM-EDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGA 606
Query: 571 CASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPVRNVYSW 630
C+ + +L G E HA ++ LE D I +L+DMY+K G I +S+ F+ + ++ SW
Sbjct: 607 CSLLPSLRLGREAHAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASW 666
Query: 631 NSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGFKHFKSMSQ 690
N+MI GY HG +A+ LF +M+ G PD +TF+GVL+AC+H+GL+ EG ++ M
Sbjct: 667 NAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMKS 726
Query: 691 VYGLIPQLEQFSCMVDLLGRAGELDKIEEFI-NKMPITPNSLIWRTVLGACCRANCRKTE 749
+GL P L+ ++C++D+LGRAG+LDK + +M + IW+++L +C R + + E
Sbjct: 727 SFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSEEADVGIWKSLLSSC-RIH-QNLE 784
Query: 750 LGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVXXXXXXXXXXXXXXXXGCSWVTMK 809
+G K A LFE+EP+ NYVLL+N+YA GKWEDV GCSW+ +
Sbjct: 785 MGEKVAAKLFELEPEKPENYVLLSNLYAGLGKWEDVRKVRQRMNEMSLRKDAGCSWIELN 844
Query: 810 DGVHVFVAGDESHPEKDLIYEKLKELNQKMRDAGYVPQTKFALFDLEPESKEDLVSYHSE 869
V FV G+ + I L K+ GY P T DL E K + + HSE
Sbjct: 845 RKVFSFVVGERFLDGFEEIKSLWSILEMKISKMGYRPDTMSVQHDLSEEEKIEQLRGHSE 904
Query: 870 KIAVAFVLTRNSK-LPIRIMKNLRVCGDCHSAFKFISKIVGREIVLRDSNRFHHFNDGKC 928
K+A+ + L + S+ IR+ KNLR+C DCH+A K ISK++ REIV+RD+ RFHHF +G C
Sbjct: 905 KLALTYGLIKTSEGTTIRVYKNLRICVDCHNAAKLISKVMEREIVVRDNKRFHHFKNGVC 964
Query: 929 SCGDYW 934
SCGDYW
Sbjct: 965 SCGDYW 970
|
|
| TAIR|locus:2183931 AT5G13230 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1175 (418.7 bits), Expect = 4.6e-135, Sum P(2) = 4.6e-135
Identities = 247/659 (37%), Positives = 372/659 (56%)
Query: 278 VHGYLIRSGLFDMVAVGNGLVNMYAKCGTIDDSRSVFRFMIGKDSVSWNTMISGLDQNGC 337
+H +++ G VG L+N Y+ CG++D +R+VF ++ KD V W ++S +NG
Sbjct: 168 LHSPIVKLGYDSNAFVGAALINAYSVCGSVDSARTVFEGILCKDIVVWAGIVSCYVENGY 227
Query: 338 YEEAIMNFCAMRRDGLMXXXXXXXXXXXXCASLGWIMLGQQIHGEGLKLGLDSDVSVSNA 397
+E+++ MR G M LG + +HG+ LK D V
Sbjct: 228 FEDSLKLLSCMRMAGFMPNNYTFDTALKASIGLGAFDFAKGVHGQILKTCYVLDPRVGVG 287
Query: 398 LLSLYADAGYLSRCLKVFFLMPEHDQVSWNSVIGAFADSEALVSEAVKYYLDMRRAGWSP 457
LL LY G +S KVF MP++D V W+ +I F + +EAV ++ MR A P
Sbjct: 288 LLQLYTQLGDMSDAFKVFNEMPKNDVVPWSFMIARFCQN-GFCNEAVDLFIRMREAFVVP 346
Query: 458 NGVTFINILAAASSFSMGKLGHQVHAQVIKYNVANETTIENALLSCYGKCGEMDDCEKIF 517
N T +IL + LG Q+H V+K + + NAL+ Y KC +MD K+F
Sbjct: 347 NEFTLSSILNGCAIGKCSGLGEQLHGLVVKVGFDLDIYVSNALIDVYAKCEKMDTAVKLF 406
Query: 518 ARMSERRDEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVATL 577
A +S + +EVSWN++I GY + KA ++ ++ + TF++ L ACAS+A++
Sbjct: 407 AELSSK-NEVSWNTVIVGYENLGEGGKAFSMFREALRNQVSVTEVTFSSALGACASLASM 465
Query: 578 ERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPVRNVYSWNSMISGY 637
+ G++VH ++ V + ++L+DMY+KCG I +A F+ M +V SWN++ISGY
Sbjct: 466 DLGVQVHGLAIKTNNAKKVAVSNSLIDMYAKCGDIKFAQSVFNEMETIDVASWNALISGY 525
Query: 638 ARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ 697
+ HG G +AL + MK P+ +TF+GVLS CS+AGL+D+G + F+SM + +G+ P
Sbjct: 526 STHGLGRQALRILDIMKDRDCKPNGLTFLGVLSGCSNAGLIDQGQECFESMIRDHGIEPC 585
Query: 698 LEQFSCMVDLLGRAGELDKIEEFINKMPITPNSLIWRTVLGACCRANCRKTELGRKAANM 757
LE ++CMV LLGR+G+LDK + I +P P+ +IWR +L A N E R++A
Sbjct: 586 LEHYTCMVRLLGRSGQLDKAMKLIEGIPYEPSVMIWRAMLSASMNQN--NEEFARRSAEE 643
Query: 758 LFEMEPQNAVNYVLLANMYASGGKWEDVXXXXXXXXXXXXXXXXGCSWVTMKDGVHVFVA 817
+ ++ P++ YVL++NMYA +W +V G SW+ + VH F
Sbjct: 644 ILKINPKDEATYVLVSNMYAGAKQWANVASIRKSMKEMGVKKEPGLSWIEHQGDVHYFSV 703
Query: 818 GDESHPEKDLIYEKLKELNQKMRDAGYVPQTKFALFDLEPESKEDLVSYHSEKIAVAFVL 877
G HP+ LI L+ LN K AGYVP L D++ E K+ + HSE++A+A+ L
Sbjct: 704 GLSDHPDMKLINGMLEWLNMKATRAGYVPDRNAVLLDMDDEEKDKRLWVHSERLALAYGL 763
Query: 878 TR--NSKLPIRIMKNLRVCGDCHSAFKFISKIVGREIVLRDSNRFHHFNDGKCSCGDYW 934
R +S+ I IMKNLR+C DCHSA K IS IV R++V+RD NRFHHF+ G CSCGD+W
Sbjct: 764 VRMPSSRNRILIMKNLRICSDCHSAMKVISSIVQRDLVIRDMNRFHHFHAGVCSCGDHW 822
|
|
| TAIR|locus:2103483 OTP84 "ORGANELLE TRANSCRIPT PROCESSING 84" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1173 (418.0 bits), Expect = 1.4e-133, Sum P(2) = 1.4e-133
Identities = 257/680 (37%), Positives = 379/680 (55%)
Query: 270 EGRRKGKEVHGYLIRSGLFDMVAVGNGLVNMYAKCGTIDDSRSVFRFMIGKDSVSWNTMI 329
EG GK+VH Y +R G + + N LV MY K G + S+ + G+D V+WNT++
Sbjct: 216 EGLMMGKQVHAYGLRKGELNSFII-NTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVL 274
Query: 330 SGLDQNGCYEEAIMNFCAMRRDGLMXXXXXXXXXXXXCASLGWIMLGQQIHGEGLKLG-L 388
S L QN EA+ M +G+ C+ L + G+++H LK G L
Sbjct: 275 SSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSL 334
Query: 389 DSDVSVSNALLSLYADAGYLSRCLKVFFLMPEHDQVSWNSVIGAFADSEALVSEAVKYYL 448
D + V +AL+ +Y + + +VF M + WN++I ++ +E EA+ ++
Sbjct: 335 DENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEH-DKEALLLFI 393
Query: 449 DMRR-AGWSPNGVTFINILAAASSFSMGKLGHQVHAQVIKYNVANETTIENALLSCYGKC 507
M AG N T ++ A +H V+K + + ++N L+ Y +
Sbjct: 394 GMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRL 453
Query: 508 GEMDDCEKIFARMSERRDEVSWNSMISGYI---HNE----LLPKAMNLVWFMMQRGQRL- 559
G++D +IF +M E RD V+WN+MI+GY+ H+E LL K NL + + R+
Sbjct: 454 GKIDIAMRIFGKM-EDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVS 512
Query: 560 ---DHFTFATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYAS 616
+ T T+L +CA+++ L +G E+HA ++ L DV +GSALVDMY+KCG + +
Sbjct: 513 LKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSR 572
Query: 617 RFFDLMPVRNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAG 676
+ FD +P +NV +WN +I Y HG+G +A+ L M + G P+ VTF+ V +ACSH+G
Sbjct: 573 KVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSG 632
Query: 677 LVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKMPITPNSL-IWRT 735
+VDEG + F M YG+ P + ++C+VDLLGRAG + + + +N MP N W +
Sbjct: 633 MVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSS 692
Query: 736 VLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVXXXXXXXXXX 795
+LGA N E+G AA L ++EP A +YVLLAN+Y+S G W+
Sbjct: 693 LLGASRIHN--NLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQ 750
Query: 796 XXXXXXGCSWVTMKDGVHVFVAGDESHPEKDLIYEKLKELNQKMRDAGYVPQTKFALFDL 855
GCSW+ D VH FVAGD SHP+ + + L+ L ++MR GYVP T L ++
Sbjct: 751 GVRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLSGYLETLWERMRKEGYVPDTSCVLHNV 810
Query: 856 EPESKEDLVSYHSEKIAVAF-VLTRNSKLPIRIMKNLRVCGDCHSAFKFISKIVGREIVL 914
E + KE L+ HSEK+A+AF +L + IR+ KNLRVC DCH A KFISKIV REI+L
Sbjct: 811 EEDEKEILLCGHSEKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLATKFISKIVDREIIL 870
Query: 915 RDSNRFHHFNDGKCSCGDYW 934
RD RFH F +G CSCGDYW
Sbjct: 871 RDVRRFHRFKNGTCSCGDYW 890
|
|
| TAIR|locus:2148101 AT5G16860 "AT5G16860" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1025 (365.9 bits), Expect = 2.9e-133, Sum P(2) = 2.9e-133
Identities = 215/560 (38%), Positives = 323/560 (57%)
Query: 391 DVSVSNALLSLYADAGYLSRCLKVFFLMPEH----DQVSWNSVIGAFADSEALVSEAVKY 446
DV NA+++ Y+ G +++F M E D V+W++ I +A L EA+
Sbjct: 294 DVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQ-RGLGYEALGV 352
Query: 447 YLDMRRAGWSPNGVTFINILAAASSFSMGKLGHQVHAQVIKYNV-------ANETTIENA 499
M +G PN VT I++L+ +S G ++H IKY + +E + N
Sbjct: 353 CRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENMVINQ 412
Query: 500 LLSCYGKCGEMDDCEKIFARMSER-RDEVSWNSMISGYIHNELLPKAMNLVWFMMQRG-- 556
L+ Y KC ++D +F +S + RD V+W MI GY + KA+ L+ M +
Sbjct: 413 LIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQ 472
Query: 557 QRLDHFTFATVLSACASVATLERGMEVHACGVRACLE-FDVVIGSALVDMYSKCGRIDYA 615
R + FT + L ACAS+A L G ++HA +R + + + L+DMY+KCG I A
Sbjct: 473 TRPNAFTISCALVACASLAALRIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSISDA 532
Query: 616 SRFFDLMPVRNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHA 675
FD M +N +W S+++GY HG+G++AL +F +M+ G D VT + VL ACSH+
Sbjct: 533 RLVFDNMMAKNEVTWTSLMTGYGMHGYGEEALGIFDEMRRIGFKLDGVTLLVVLYACSHS 592
Query: 676 GLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKMPITPNSLIWRT 735
G++D+G ++F M V+G+ P E ++C+VDLLGRAG L+ I +MP+ P ++W
Sbjct: 593 GMIDQGMEYFNRMKTVFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVA 652
Query: 736 VLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVXXXXXXXXXX 795
L +CCR + K ELG AA + E+ + +Y LL+N+YA+ G+W+DV
Sbjct: 653 FL-SCCRIH-GKVELGEYAAEKITELASNHDGSYTLLSNLYANAGRWKDVTRIRSLMRHK 710
Query: 796 XXXXXXGCSWVTMKDGVHVFVAGDESHPEKDLIYEKLKELNQKMRDAGYVPQTKFALFDL 855
GCSWV G F GD++HP IY+ L + Q+++D GYVP+T FAL D+
Sbjct: 711 GVKKRPGCSWVEGIKGTTTFFVGDKTHPHAKEIYQVLLDHMQRIKDIGYVPETGFALHDV 770
Query: 856 EPESKEDLVSYHSEKIAVAF-VLTRNSKLPIRIMKNLRVCGDCHSAFKFISKIVGREIVL 914
+ E K+DL+ HSEK+A+A+ +LT IRI KNLRVCGDCH+AF ++S+I+ +I+L
Sbjct: 771 DDEEKDDLLFEHSEKLALAYGILTTPQGAAIRITKNLRVCGDCHTAFTYMSRIIDHDIIL 830
Query: 915 RDSNRFHHFNDGKCSCGDYW 934
RDS+RFHHF +G CSC YW
Sbjct: 831 RDSSRFHHFKNGSCSCKGYW 850
|
|
| TAIR|locus:2202074 CRR22 "CHLORORESPIRATORY REDUCTION22" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1227 (437.0 bits), Expect = 4.8e-131, Sum P(2) = 4.8e-131
Identities = 270/719 (37%), Positives = 409/719 (56%)
Query: 228 LSDLYVGSALVSGFARLGNFYYARKIFEQM----IQKNVVSMNGLME--GR----RKGKE 277
L+ LY ++ GFA++ + A + F +M ++ V + L++ G R GKE
Sbjct: 99 LNVLY--HTMLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGKE 156
Query: 278 VHGYLIRSGL-FDMVAVGNGLVNMYAKCGTIDDSRSVFRFMIGKDSVSWNTMISGLDQNG 336
+HG L++SG D+ A+ GL NMYAKC ++++R VF M +D VSWNT+++G QNG
Sbjct: 157 IHGLLVKSGFSLDLFAM-TGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNG 215
Query: 337 CYEEAIMNFCAMRRDGLMXXXXXXXXXXXXCASLGWIMLGQQIHGEGLKLGLDSDVSVSN 396
A+ +M + L ++L I +G++IHG ++ G DS V++S
Sbjct: 216 MARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNIST 275
Query: 397 ALLSLYADAGYLSRCLKVFFLMPEHDQVSWNSVIGAFADSEALVSEAVKYYLDMRRAGWS 456
AL+ +YA G L ++F M E + VSWNS+I A+ +E EA+ + M G
Sbjct: 276 ALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNEN-PKEAMLIFQKMLDEGVK 334
Query: 457 PNGVTFINILAAASSFSMGKLGHQVHAQVIKYNVANETTIENALLSCYGKCGEMDDCEKI 516
P V+ + L A + + G +H ++ + ++ N+L+S Y KC E+D +
Sbjct: 335 PTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASM 394
Query: 517 FARMSERRDEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVAT 576
F ++ + R VSWN+MI G+ N A+N M R + D FT+ +V++A A ++
Sbjct: 395 FGKL-QSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSI 453
Query: 577 LERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPVRNVYSWNSMISG 636
+H +R+CL+ +V + +ALVDMY+KCG I A FD+M R+V +WN+MI G
Sbjct: 454 THHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDG 513
Query: 637 YARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIP 696
Y HG G AL LF +M+ P+ VTF+ V+SACSH+GLV+ G K F M + Y +
Sbjct: 514 YGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACSHSGLVEAGLKCFYMMKENYSIEL 573
Query: 697 QLEQFSCMVDLLGRAGELDKIEEFINKMPITPNSLIWRTVLGACCRANCRKTELGRKAAN 756
++ + MVDLLGRAG L++ +FI +MP+ P ++ +LGAC + + + KAA
Sbjct: 574 SMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGAC-QIH-KNVNFAEKAAE 631
Query: 757 MLFEMEPQNAVNYVLLANMYASGGKWEDVXXXXXXXXXXXXXXXXGCSWVTMKDGVHVFV 816
LFE+ P + +VLLAN+Y + WE V GCS V +K+ VH F
Sbjct: 632 RLFELNPDDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPGCSMVEIKNEVHSFF 691
Query: 817 AGDESHPEKDLIYEKLKELNQKMRDAGYVPQTKFALFDLEPESKEDLVSYHSEKIAVAF- 875
+G +HP+ IY L++L +++AGYVP T L +E + KE L+S HSEK+A++F
Sbjct: 692 SGSTAHPDSKKIYAFLEKLICHIKEAGYVPDTNLVL-GVENDVKEQLLSTHSEKLAISFG 750
Query: 876 VLTRNSKLPIRIMKNLRVCGDCHSAFKFISKIVGREIVLRDSNRFHHFNDGKCSCGDYW 934
+L + I + KNLRVC DCH+A K+IS + GREIV+RD RFHHF +G CSCGDYW
Sbjct: 751 LLNTTAGTTIHVRKNLRVCADCHNATKYISLVTGREIVVRDMQRFHHFKNGACSCGDYW 809
|
|
| TAIR|locus:2082886 EMB2261 "embryo defective 2261" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1272 (452.8 bits), Expect = 1.2e-129, P = 1.2e-129
Identities = 293/807 (36%), Positives = 447/807 (55%)
Query: 150 IETRDLISWNSIISVYSQRGDTISVFKLFSRMQREGFRYSLKPNEYTFGSLITAAYSSVL 209
I D ++++S++ + D F+L + + ++P+ + SLI+ YS
Sbjct: 57 IRPMDSVTFSSLLKSCIRARD----FRLGKLVHARLIEFDIEPDSVLYNSLISL-YSK-- 109
Query: 210 SG-SYLLQQILAMVKKAGLLSDLYVGSALVSGFARLGNFYYARKIFEQMIQKNVVSMN-- 266
SG S + + +++ G D+ SA+++ + G A K+F + ++ +V +
Sbjct: 110 SGDSAKAEDVFETMRRFGK-RDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVPNDYC 168
Query: 267 --GLMEGRRK------GKEVHGYLIRSGLFDM-VAVGNGLVNMYAKC-GTIDDSRSVFRF 316
++ G+ G+L+++G F+ V VG L++M+ K + +++ VF
Sbjct: 169 YTAVIRACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDK 228
Query: 317 MIGKDSVSWNTMISGLDQNGCYEEAIMNFCAMRRDGLMXXXXXXXXXXXXCASLGWIMLG 376
M + V+W MI+ Q G EAI F M G CA L + LG
Sbjct: 229 MSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLG 288
Query: 377 QQIHGEGLKLGLDSDVSVSNALLSLYADA---GYLSRCLKVFFLMPEHDQVSWNSVIGAF 433
+Q+H ++ GL DV S L+ +YA G + C KVF M +H +SW ++I +
Sbjct: 289 KQLHSWAIRSGLVDDVECS--LVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTALITGY 346
Query: 434 ADSEALVSEAVKYYLDMRRAGW-SPNGVTFINILAAASSFSMGKLGHQVHAQVIKYNVAN 492
+ L +EA+ + +M G PN TF + A + S ++G QV Q K +A+
Sbjct: 347 MKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRVGKQVLGQAFKRGLAS 406
Query: 493 ETTIENALLSCYGKCGEMDDCEKIFARMSERRDEVSWNSMISGYIHNELLPKAMNLVWFM 552
+++ N+++S + K M+D ++ F +SE+ + VS+N+ + G N +A L+ +
Sbjct: 407 NSSVANSVISMFVKSDRMEDAQRAFESLSEK-NLVSYNTFLDGTCRNLNFEQAFKLLSEI 465
Query: 553 MQRGQRLDHFTFATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRI 612
+R + FTFA++LS A+V ++ +G ++H+ V+ L + + +AL+ MYSKCG I
Sbjct: 466 TERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNALISMYSKCGSI 525
Query: 613 DYASRFFDLMPVRNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSAC 672
D ASR F+ M RNV SW SMI+G+A+HG + L F+QM +G P+ VT+V +LSAC
Sbjct: 526 DTASRVFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNEVTYVAILSAC 585
Query: 673 SHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKMPITPNSLI 732
SH GLV EG++HF SM + + + P++E ++CMVDLL RAG L EFIN MP + L+
Sbjct: 586 SHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEFINTMPFQADVLV 645
Query: 733 WRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVXXXXXXX 792
WRT LGAC R + TELG+ AA + E++P Y+ L+N+YA GKWE+
Sbjct: 646 WRTFLGAC-RVHSN-TELGKLAARKILELDPNEPAAYIQLSNIYACAGKWEESTEMRRKM 703
Query: 793 XXXXXXXXXGCSWVTMKDGVHVFVAGDESHPEKDLIYEKLKELNQKMRDAGYVPQTKFAL 852
GCSW+ + D +H F GD +HP IY++L L +++ GYVP T L
Sbjct: 704 KERNLVKEGGCSWIEVGDKIHKFYVGDTAHPNAHQIYDELDRLITEIKRCGYVPDTDLVL 763
Query: 853 FDLEPES----KEDLVSYHSEKIAVAFVLTRNSKL-PIRIMKNLRVCGDCHSAFKFISKI 907
LE E+ KE L+ HSEKIAVAF L SK P+R+ KNLRVCGDCH+A K+IS +
Sbjct: 764 HKLEEENDEAEKERLLYQHSEKIAVAFGLISTSKSRPVRVFKNLRVCGDCHNAMKYISTV 823
Query: 908 VGREIVLRDSNRFHHFNDGKCSCGDYW 934
GREIVLRD NRFHHF DGKCSC DYW
Sbjct: 824 SGREIVLRDLNRFHHFKDGKCSCNDYW 850
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9FIB2 | PP373_ARATH | No assigned EC number | 0.6346 | 0.9925 | 0.9316 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 934 | |||
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-171 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-154 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-82 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 6e-72 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-55 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-36 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 8e-35 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-33 | |
| pfam14432 | 116 | pfam14432, DYW_deaminase, DYW family of nucleic ac | 2e-28 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-27 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-22 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-21 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 9e-15 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 6e-13 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 8e-10 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 5e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-08 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 4e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 8e-06 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-05 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 5e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 7e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 7e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 3e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 3e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 3e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 0.001 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 0.001 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.001 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.003 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.004 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 521 bits (1343), Expect = e-171
Identities = 270/745 (36%), Positives = 418/745 (56%), Gaps = 51/745 (6%)
Query: 231 LYVGSALVSGFARLGNFYYARKIFEQMIQKNVVSMNGLMEGR------------------ 272
+ +G+A++S F R G +A +F +M ++++ S N L+ G
Sbjct: 121 VRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLW 180
Query: 273 -----------------------RKGKEVHGYLIRSGLFDMVAVGNGLVNMYAKCGTIDD 309
+G+EVH +++R G V V N L+ MY KCG +
Sbjct: 181 AGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVS 240
Query: 310 SRSVFRFMIGKDSVSWNTMISGLDQNGCYEEAIMNFCAMRRDGLMSSNFSLISTLSSCAS 369
+R VF M +D +SWN MISG +NG E + F MR + ++ S +S+C
Sbjct: 241 ARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACEL 300
Query: 370 LGWIMLGQQIHGEGLKLGLDSDVSVSNALLSLYADAGYLSRCLKVFFLMPEHDQVSWNSV 429
LG LG+++HG +K G DVSV N+L+ +Y G KVF M D VSW ++
Sbjct: 301 LGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAM 360
Query: 430 IGAFADSEALVSEAVKYYLDMRRAGWSPNGVTFINILAAASSFSMGKLGHQVHAQVIKYN 489
I + + L +A++ Y M + SP+ +T ++L+A + +G ++H +
Sbjct: 361 ISGYEKN-GLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKG 419
Query: 490 VANETTIENALLSCYGKCGEMDDCEKIFARMSERRDEVSWNSMISGYIHNELLPKAMNLV 549
+ + + NAL+ Y KC +D ++F + E+ D +SW S+I+G N +A L+
Sbjct: 420 LISYVVVANALIEMYSKCKCIDKALEVFHNIPEK-DVISWTSIIAGLRLNNRCFEA--LI 476
Query: 550 WF-MMQRGQRLDHFTFATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSK 608
+F M + + T LSACA + L G E+HA +R + FD + +AL+D+Y +
Sbjct: 477 FFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVR 536
Query: 609 CGRIDYASRFFDLMPVRNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGV 668
CGR++YA F+ ++V SWN +++GY HG G A+ LF++M G PD VTF+ +
Sbjct: 537 CGRMNYAWNQFNSHE-KDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISL 595
Query: 669 LSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKMPITP 728
L ACS +G+V +G ++F SM + Y + P L+ ++C+VDLLGRAG+L + FINKMPITP
Sbjct: 596 LCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITP 655
Query: 729 NSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKA 788
+ +W +L A CR + R ELG AA +FE++P + Y+LL N+YA GKW++VA+
Sbjct: 656 DPAVWGALLNA-CRIH-RHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARV 713
Query: 789 RKAMKEAEVKKEAGCSWVTMKDGVHVFVAGDESHPEKDLIYEKLKELNQKMRDAGYVPQT 848
RK M+E + + GCSWV +K VH F+ DESHP+ I L+ +KM+ +G
Sbjct: 714 RKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSE 773
Query: 849 KFALFDLEPESKEDLVSYHSEKIAVAFVLTRNSK-LPIRIMKNLRVCGDCHSAFKFISKI 907
++ ++E SK+D+ HSE++A+AF L +PI + KNL +C +CH+ KFISKI
Sbjct: 774 SSSMDEIEV-SKDDIFCGHSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKI 832
Query: 908 VGREIVLRDSNRFHHFNDGKCSCGD 932
V REI +RD+ +FHHF DG+CSCGD
Sbjct: 833 VRREISVRDTEQFHHFKDGECSCGD 857
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 470 bits (1210), Expect = e-154
Identities = 222/622 (35%), Positives = 350/622 (56%), Gaps = 6/622 (0%)
Query: 315 RFMIGKDSVSWNTMISGLDQNGCYEEAIMNFCAMRRDGLMSSNFSLISTL-SSCASLGWI 373
I K VS + I L G + EA+ F + + S L +C +L I
Sbjct: 80 DTQIRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSI 139
Query: 374 MLGQQIHGEGLKLGLDSDVSVSNALLSLYADAGYLSRCLKVFFLMPEHDQVSWNSVIGAF 433
+ ++ G + D + N +L ++ G L ++F MPE + SW ++IG
Sbjct: 140 RCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGL 199
Query: 434 ADSEALVSEAVKYYLDMRRAGWSPNGVTFINILAAASSFSMGKLGHQVHAQVIKYNVANE 493
D+ EA + +M G TF+ +L A++ + G Q+H V+K V +
Sbjct: 200 VDAGNYR-EAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGD 258
Query: 494 TTIENALLSCYGKCGEMDDCEKIFARMSERRDEVSWNSMISGYIHNELLPKAMNLVWFMM 553
T + AL+ Y KCG+++D +F M E+ V+WNSM++GY + +A+ L + M
Sbjct: 259 TFVSCALIDMYSKCGDIEDARCVFDGMPEK-TTVAWNSMLAGYALHGYSEEALCLYYEMR 317
Query: 554 QRGQRLDHFTFATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRID 613
G +D FTF+ ++ + +A LE + HA +R D+V +ALVD+YSK GR++
Sbjct: 318 DSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRME 377
Query: 614 YASRFFDLMPVRNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACS 673
A FD MP +N+ SWN++I+GY HG G KA+ +F +M +G P+HVTF+ VLSAC
Sbjct: 378 DARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACR 437
Query: 674 HAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKMPITPNSLIW 733
++GL ++G++ F+SMS+ + + P+ ++CM++LLGR G LD+ I + P P +W
Sbjct: 438 YSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMW 497
Query: 734 RTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMK 793
+L A CR + + ELGR AA L+ M P+ NYV+L N+Y S G+ + AK + +K
Sbjct: 498 AALLTA-CRIH-KNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLK 555
Query: 794 EAEVKKEAGCSWVTMKDGVHVFVAGDESHPEKDLIYEKLKELNQKMRDAGYVPQTKFALF 853
+ C+W+ +K H F +GD HP+ IY+KL EL +++ + GYV + L
Sbjct: 556 RKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLP 615
Query: 854 DLEPESKEDLVSYHSEKIAVAFVLTRNSK-LPIRIMKNLRVCGDCHSAFKFISKIVGREI 912
D++ + ++ YHSEK+A+AF L S+ P++I ++ R+C DCH KFI+ + REI
Sbjct: 616 DVDEDEEKVSGRYHSEKLAIAFGLINTSEWTPLQITQSHRICKDCHKVIKFIALVTKREI 675
Query: 913 VLRDSNRFHHFNDGKCSCGDYW 934
V+RD++RFHHF GKCSCGDYW
Sbjct: 676 VVRDASRFHHFKLGKCSCGDYW 697
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 283 bits (726), Expect = 3e-82
Identities = 180/632 (28%), Positives = 295/632 (46%), Gaps = 89/632 (14%)
Query: 20 VFLCNTLINVYVRVGDLASASKLFDEMPDRNSVSWACIVSGYTHKGMSNEACKMFKEMVR 79
V L N +++++VR G+L A +F +MP+R+ SW +V GY G +EA ++ M+
Sbjct: 121 VRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLW 180
Query: 80 AGFLLNRYALGSVLRACQECGPSGFKFGMQVHCLVLKSNQTFDGLVSNVLIAMYGSCLES 139
AG + Y VLR C G G +VH V++ D V N LI MY C +
Sbjct: 181 AGVRPDVYTFPCVLRTCG--GIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDV 238
Query: 140 TDCARRIFEEIETRDLISWNSIISVYSQRGDTISVFKLFSRMQREGFRYSLKPNEYTFGS 199
AR +F+ + RD ISWN++IS Y + G+ + +LF M RE S+ P+ T S
Sbjct: 239 V-SARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTM-RE---LSVDPDLMTITS 293
Query: 200 LITAAYSSVLSGSYLLQQILAMVKKAGLLSDLYVGSALVSGFARLGNFYYARKIFEQMIQ 259
+I+A LL D
Sbjct: 294 VISA---------------------CELLGD----------------------------- 303
Query: 260 KNVVSMNGLMEGRRKGKEVHGYLIRSGLFDMVAVGNGLVNMYAKCGTIDDSRSVFRFMIG 319
R G+E+HGY++++G V+V N L+ MY G+ ++ VF M
Sbjct: 304 ------------ERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET 351
Query: 320 KDSVSWNTMISGLDQNGCYEEAIMNFCAMRRDGLMSSNFSLISTLSSCASLGWIMLGQQI 379
KD+VSW MISG ++NG ++A+ + M +D + ++ S LS+CA LG + +G ++
Sbjct: 352 KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKL 411
Query: 380 HGEGLKLGLDSDVSVSNALLSLYADAGYLSRCLKVFFLMPEHDQVSWNSVIGAFADS--- 436
H + GL S V V+NAL+ +Y+ + + L+VF +PE D +SW S+I +
Sbjct: 412 HELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRC 471
Query: 437 -EALVSEAVKYYLDMRRAGWSPNGVTFINILAAASSFSMGKLGHQVHAQVIKYNVANETT 495
EAL + PN VT I L+A + G ++HA V++ + +
Sbjct: 472 FEAL------IFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGF 525
Query: 496 IENALLSCYGKCGEMDDCEKIFARMSERRDEVSWNSMISGYIHNELLPKAMNLVWFMMQR 555
+ NALL Y +CG M+ F S +D VSWN +++GY+ + A+ L M++
Sbjct: 526 LPNALLDLYVRCGRMNYAWNQFN--SHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVES 583
Query: 556 GQRLDHFTFATVLSACASVATLERGMEVHACGVRACLEFDVVIG----SALVDMYSKCGR 611
G D TF ++L AC+ + +G+E ++ + + +VD+ + G+
Sbjct: 584 GVNPDEVTFISLLCACSRSGMVTQGLEYFH---SMEEKYSITPNLKHYACVVDLLGRAGK 640
Query: 612 IDYASRFFDLMPVR-NVYSWNSMISGYARHGH 642
+ A F + MP+ + W ++++ H H
Sbjct: 641 LTEAYNFINKMPITPDPAVWGALLNACRIHRH 672
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 254 bits (651), Expect = 6e-72
Identities = 142/443 (32%), Positives = 229/443 (51%), Gaps = 15/443 (3%)
Query: 245 GNFYYARKIFEQMIQKNV-------VSMNGLMEGRR---KGKEVHGYLIRSGLFDMVAVG 294
G A K+ E M + V V++ L E +R +G V + S V +G
Sbjct: 65 GQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLG 124
Query: 295 NGLVNMYAKCGTIDDSRSVFRFMIGKDSVSWNTMISGLDQNGCYEEAIMNFCAMRRDGLM 354
N +++M+ + G + + VF M +D SWN ++ G + G ++EA+ + M G+
Sbjct: 125 NAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVR 184
Query: 355 SSNFSLISTLSSCASLGWIMLGQQIHGEGLKLGLDSDVSVSNALLSLYADAGYLSRCLKV 414
++ L +C + + G+++H ++ G + DV V NAL+++Y G + V
Sbjct: 185 PDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLV 244
Query: 415 FFLMPEHDQVSWNSVI-GAFADSEALVSEAVKYYLDMRRAGWSPNGVTFINILAAASSFS 473
F MP D +SWN++I G F + E L E ++ + MR P+ +T ++++A
Sbjct: 245 FDRMPRRDCISWNAMISGYFENGECL--EGLELFFTMRELSVDPDLMTITSVISACELLG 302
Query: 474 MGKLGHQVHAQVIKYNVANETTIENALLSCYGKCGEMDDCEKIFARMSERRDEVSWNSMI 533
+LG ++H V+K A + ++ N+L+ Y G + EK+F+RM E +D VSW +MI
Sbjct: 303 DERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRM-ETKDAVSWTAMI 361
Query: 534 SGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVATLERGMEVHACGVRACLE 593
SGY N L KA+ M Q D T A+VLSACA + L+ G+++H R L
Sbjct: 362 SGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLI 421
Query: 594 FDVVIGSALVDMYSKCGRIDYASRFFDLMPVRNVYSWNSMISGYARHGHGDKALTLFSQM 653
VV+ +AL++MYSKC ID A F +P ++V SW S+I+G + +AL F QM
Sbjct: 422 SYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQM 481
Query: 654 KLDGPLPDHVTFVGVLSACSHAG 676
L P+ VT + LSAC+ G
Sbjct: 482 LLTLK-PNSVTLIAALSACARIG 503
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 206 bits (526), Expect = 2e-55
Identities = 150/529 (28%), Positives = 241/529 (45%), Gaps = 73/529 (13%)
Query: 8 HLQILKHGFAYDVFLCNTLINVYVRVGDLASASKLFDEMPDRNSVSWACIVSGYTHKGMS 67
H +++ GF DV + N LI +YV+ GD+ SA +FD MP R+ +SW ++SGY G
Sbjct: 210 HAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGEC 269
Query: 68 NEACKMFKEMVRAGFLLNRYALGSVLRACQECGPSGFKFGMQVHCLVLKSNQTFDGLVSN 127
E ++F M + + SV+ AC+ G G ++H V+K+ D V N
Sbjct: 270 LEGLELFFTMRELSVDPDLMTITSVISACELLGDER--LGREMHGYVVKTGFAVDVSVCN 327
Query: 128 VLIAMYGSCLESTDCARRIFEEIETRDLISWNSIISVYSQRGDTISVFKLFSRMQREGFR 187
LI MY S L S A ++F +ET+D +SW ++IS Y + G + ++ M+++
Sbjct: 328 SLIQMYLS-LGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDN-- 384
Query: 188 YSLKPNEYTFGSLITAAYSSVLSGSYLLQQILAMVKKAGLLSDLYVGSALVSGFARLGNF 247
+ P+E T S+++A L DL VG L R G
Sbjct: 385 --VSPDEITIASVLSACAC---------------------LGDLDVGVKLHELAERKGLI 421
Query: 248 YYARKIFEQMIQKNVVSMNGLMEGRRKGKEVHGYLIRSGLFDMVAVGNGLVNMYAKCGTI 307
Y VV N L+E MY+KC I
Sbjct: 422 SY------------VVVANALIE-----------------------------MYSKCKCI 440
Query: 308 DDSRSVFRFMIGKDSVSWNTMISGLDQNGCYEEAIMNFCAMRRDGLMSSNFSLISTLSSC 367
D + VF + KD +SW ++I+GL N EA++ F M L ++ +LI+ LS+C
Sbjct: 441 DKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSAC 499
Query: 368 ASLGWIMLGQQIHGEGLKLGLDSDVSVSNALLSLYADAGYLSRCLKVFFLMPEHDQVSWN 427
A +G +M G++IH L+ G+ D + NALL LY G ++ F E D VSWN
Sbjct: 500 ARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWN 558
Query: 428 SVIGAFADSEALVSEAVKYYLDMRRAGWSPNGVTFINILAAASSFSMGKLGHQV-HAQVI 486
++ + + S AV+ + M +G +P+ VTFI++L A S M G + H+
Sbjct: 559 ILLTGYV-AHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEE 617
Query: 487 KYNVANETTIENALLSCYGKCGEMDDCEKIFARMSERRDEVSWNSMISG 535
KY++ ++ G+ G++ + +M D W ++++
Sbjct: 618 KYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNA 666
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 147 bits (373), Expect = 3e-36
Identities = 77/205 (37%), Positives = 108/205 (52%), Gaps = 3/205 (1%)
Query: 478 GHQVHAQVIKYNVANETTIENALLSCYGKCGEMDDCEKIFARMSERRDEVSWNSMISGYI 537
G +V ++ + + + + NA+LS + + GE+ +F +M ER D SWN ++ GY
Sbjct: 105 GSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPER-DLFSWNVLVGGYA 163
Query: 538 HNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVATLERGMEVHACGVRACLEFDVV 597
+A+ L M+ G R D +TF VL C + L RG EVHA VR E DV
Sbjct: 164 KAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVD 223
Query: 598 IGSALVDMYSKCGRIDYASRFFDLMPVRNVYSWNSMISGYARHGHGDKALTLFSQMKLDG 657
+ +AL+ MY KCG + A FD MP R+ SWN+MISGY +G + L LF M+
Sbjct: 224 VVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELS 283
Query: 658 PLPDHVTFVGVLSACSHAGLVDEGF 682
PD +T V+SAC G DE
Sbjct: 284 VDPDLMTITSVISACELLG--DERL 306
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 141 bits (358), Expect = 8e-35
Identities = 100/370 (27%), Positives = 166/370 (44%), Gaps = 71/370 (19%)
Query: 11 ILKHGFAYDVFLCNTLINVYVRVGDLASASKLFDEMPDRNSVSWACIVSGYTHKGMSNEA 70
+ GF D ++ N ++ ++V+ G L A +LFDEMP+RN SW I+ G G EA
Sbjct: 149 VESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREA 208
Query: 71 CKMFKEMVRAGFLLNRYALGSVLRACQECGPSGFKFGMQVHCLVLKSNQTFDGLVSNVLI 130
+F+EM G +LRA G + + G Q+HC VLK+ D VS LI
Sbjct: 209 FALFREMWEDGSDAEPRTFVVMLRASAGLGSA--RAGQQLHCCVLKTGVVGDTFVSCALI 266
Query: 131 AMYGSCLESTDCARRIFEEIETRDLISWNSIISVYSQRGDTISVFKLFSRMQREGFRYSL 190
MY C + AR +F+ + + ++WNS+++ Y+ G + L+ M+ G +
Sbjct: 267 DMYSKC-GDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSG----V 321
Query: 191 KPNEYTFGSLITAAYSSVLSGSYLLQQILAMVKKAGLLSDLYVGSALVSGFARLGNFYYA 250
+++TF S ++ F+RL +A
Sbjct: 322 SIDQFTF-------------------------------------SIMIRIFSRLALLEHA 344
Query: 251 RKIFEQMIQKNVVSMNGLMEGRRKGKEVHGYLIRSGLFDMVAVGN-GLVNMYAKCGTIDD 309
K+ H LIR+G F + V N LV++Y+K G ++D
Sbjct: 345 -------------------------KQAHAGLIRTG-FPLDIVANTALVDLYSKWGRMED 378
Query: 310 SRSVFRFMIGKDSVSWNTMISGLDQNGCYEEAIMNFCAMRRDGLMSSNFSLISTLSSCAS 369
+R+VF M K+ +SWN +I+G +G +A+ F M +G+ ++ + ++ LS+C
Sbjct: 379 ARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRY 438
Query: 370 LGWIMLGQQI 379
G G +I
Sbjct: 439 SGLSEQGWEI 448
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 138 bits (350), Expect = 1e-33
Identities = 77/282 (27%), Positives = 137/282 (48%), Gaps = 23/282 (8%)
Query: 211 GSYLLQQILAMVKKAGLLSD------------LYVGSALVSGFARLGNFYYARKIFEQMI 258
Y++ ++L M K G+L D L ++ G GN+ A +F +M
Sbjct: 157 DQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMW 216
Query: 259 Q-------KNVVSMNGLMEGR---RKGKEVHGYLIRSGLFDMVAVGNGLVNMYAKCGTID 308
+ + V M G R G+++H ++++G+ V L++MY+KCG I+
Sbjct: 217 EDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIE 276
Query: 309 DSRSVFRFMIGKDSVSWNTMISGLDQNGCYEEAIMNFCAMRRDGLMSSNFSLISTLSSCA 368
D+R VF M K +V+WN+M++G +G EEA+ + MR G+ F+ + +
Sbjct: 277 DARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFS 336
Query: 369 SLGWIMLGQQIHGEGLKLGLDSDVSVSNALLSLYADAGYLSRCLKVFFLMPEHDQVSWNS 428
L + +Q H ++ G D+ + AL+ LY+ G + VF MP + +SWN+
Sbjct: 337 RLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNA 396
Query: 429 VIGAFADSEALVSEAVKYYLDMRRAGWSPNGVTFINILAAAS 470
+I + + ++AV+ + M G +PN VTF+ +L+A
Sbjct: 397 LIAGYGN-HGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACR 437
|
Length = 697 |
| >gnl|CDD|222749 pfam14432, DYW_deaminase, DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Score = 109 bits (275), Expect = 2e-28
Identities = 50/129 (38%), Positives = 71/129 (55%), Gaps = 22/129 (17%)
Query: 802 GCSWVTMKDGVHVFVAGDESHPEKDLIYEKLKELNQKMRDAGYVPQTKFALFDLEPESKE 861
GC W ++GD SHP EL Q+++ G VP+TK D++ E
Sbjct: 2 GCVWS----EGKKTLSGDGSHPTSKE------ELFQRIKVEGVVPETKEIGHDVDAEEFR 51
Query: 862 D------LVSYHSEKIAVAFVLTRNSKLPIRIMKNL-RVCGDCHSAFKFISKIVGREIVL 914
D L++ H+EK A+A+ L RI+K L R+CGDCH F++I+K GREI++
Sbjct: 52 DNGIKGKLLASHAEKQALAY-----GLLTTRIIKVLKRMCGDCHEFFRYIAKYTGREIIV 106
Query: 915 RDSNRFHHF 923
RD +RFHHF
Sbjct: 107 RDPSRFHHF 115
|
A family of nucleic acid deaminases prototyped by the plant PPR DYW proteins that are implicated in chloroplast and mitochondrial RNA transcript maturation by numerous C to U editing events. The name derives from the DYW motif present at the C-terminus of the classical plant PPR DYW deaminases. Members of this family are present in bacteria, plants, Naegleria, and fungi. Plants and Naegleria show lineage-specific expansions of this family. The classical DYW family contain an additional C-terminal metal-binding cluster composed of 2 histidines and a CxC motif and are often fused to PPR repeats. Ascomycete versions, which are independent lateral transfers, contain a large insert within the domain and are often fused to ankyrin repeats. Bacterial versions are predicted to function as toxins in polymorphic toxin systems. Length = 116 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 118 bits (298), Expect = 3e-27
Identities = 81/270 (30%), Positives = 134/270 (49%), Gaps = 15/270 (5%)
Query: 4 AKLFHLQILKHGFAYDVFLCNTLINVYVRVGDLASASKLFDEMPDRNSVSWACIVSGYTH 63
+ H ++K GFA DV +CN+LI +Y+ +G A K+F M +++VSW ++SGY
Sbjct: 307 GREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEK 366
Query: 64 KGMSNEACKMFKEMVRAGFLLNRYALGSVLRACQECGPSGFKFGMQVHCLVLKSNQTFDG 123
G+ ++A + + M + + + SVL AC G G+++H L +
Sbjct: 367 NGLPDKALETYALMEQDNVSPDEITIASVLSACACLGD--LDVGVKLHELAERKGLISYV 424
Query: 124 LVSNVLIAMYGSCLESTDCARRIFEEIETRDLISWNSIISVYSQRGDTISVFKLFSRMQR 183
+V+N LI MY C + D A +F I +D+ISW SII+ F +M
Sbjct: 425 VVANALIEMYSKC-KCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQM-- 481
Query: 184 EGFRYSLKPNEYTFGSLIT--AAYSSVLSGSYLLQQILAMVKKAGLLSDLYVGSALVSGF 241
+LKPN T + ++ A +++ G ++I A V + G+ D ++ +AL+ +
Sbjct: 482 ---LLTLKPNSVTLIAALSACARIGALMCG----KEIHAHVLRTGIGFDGFLPNALLDLY 534
Query: 242 ARLGNFYYARKIFEQMIQKNVVSMNGLMEG 271
R G YA F +K+VVS N L+ G
Sbjct: 535 VRCGRMNYAWNQFNSH-EKDVVSWNILLTG 563
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 1e-22
Identities = 58/206 (28%), Positives = 107/206 (51%), Gaps = 7/206 (3%)
Query: 5 KLFHLQILKHGFAYDVFLCNTLINVYVRVGDLASASKLFDEMPDRNSVSWACIVSGYTHK 64
+ H +LK G D F+ LI++Y + GD+ A +FD MP++ +V+W +++GY
Sbjct: 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALH 303
Query: 65 GMSNEACKMFKEMVRAGFLLNRYALGSVLRACQECGPSGFKFGMQVHCLVLKSNQTFDGL 124
G S EA ++ EM +G ++++ ++R + Q H ++++ D +
Sbjct: 304 GYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLAL--LEHAKQAHAGLIRTGFPLDIV 361
Query: 125 VSNVLIAMYGSCLESTDCARRIFEEIETRDLISWNSIISVYSQRGDTISVFKLFSRMQRE 184
+ L+ +Y S + AR +F+ + ++LISWN++I+ Y G ++F RM E
Sbjct: 362 ANTALVDLY-SKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAE 420
Query: 185 GFRYSLKPNEYTFGSLITAAYSSVLS 210
G + PN TF ++++A S LS
Sbjct: 421 G----VAPNHVTFLAVLSACRYSGLS 442
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 99.5 bits (248), Expect = 3e-21
Identities = 82/313 (26%), Positives = 133/313 (42%), Gaps = 20/313 (6%)
Query: 13 KHGFAYDVFLCNTLINVYVRVGDLASASKLFDEMPDRNSVSWACIVSGYTHKGMSNEACK 72
+ G V + N LI +Y + + A ++F +P+++ +SW I++G EA
Sbjct: 417 RKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALI 476
Query: 73 MFKEMVRAGFLLNRYALGSVLRACQECGPSGFKFGMQVHCLVLKSNQTFDGLVSNVLIAM 132
F++M+ N L + L AC G G ++H VL++ FDG + N L+ +
Sbjct: 477 FFRQML-LTLKPNSVTLIAALSACARIG--ALMCGKEIHAHVLRTGIGFDGFLPNALLDL 533
Query: 133 YGSCLESTDCARRIFEEIETRDLISWNSIISVYSQRGDTISVFKLFSRMQREGFRYSLKP 192
Y C + A F E +D++SWN +++ Y G +LF+RM G P
Sbjct: 534 YVRC-GRMNYAWNQFNSHE-KDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVN----P 587
Query: 193 NEYTFGSLITAAYSS--VLSGSYLLQQILAMVKKAGLLSDLYVGSALVSGFARLGNFYYA 250
+E TF SL+ A S V G M +K + +L + +V R G A
Sbjct: 588 DEVTFISLLCACSRSGMVTQGLEYFHS---MEEKYSITPNLKHYACVVDLLGRAGKLTEA 644
Query: 251 RKIFEQM-IQKNVVSMNGLMEGRRKGKEVH-GYLIRSGLFDMVAVGNG----LVNMYAKC 304
+M I + L+ R + V G L +F++ G L N+YA
Sbjct: 645 YNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADA 704
Query: 305 GTIDDSRSVFRFM 317
G D+ V + M
Sbjct: 705 GKWDEVARVRKTM 717
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 78.7 bits (194), Expect = 9e-15
Identities = 43/150 (28%), Positives = 75/150 (50%), Gaps = 2/150 (1%)
Query: 530 NSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVATLERGMEVHACGVR 589
NS + + L +A+ L+ M + +D + + C +E G V + +
Sbjct: 55 NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALS 114
Query: 590 ACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPVRNVYSWNSMISGYARHGHGDKALTL 649
+ V +G+A++ M+ + G + +A F MP R+++SWN ++ GYA+ G+ D+AL L
Sbjct: 115 SHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCL 174
Query: 650 FSQMKLDGPLPDHVTFVGVLSACSHAGLVD 679
+ +M G PD TF VL C G+ D
Sbjct: 175 YHRMLWAGVRPDVYTFPCVLRTC--GGIPD 202
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 72.6 bits (178), Expect = 6e-13
Identities = 31/97 (31%), Positives = 53/97 (54%)
Query: 4 AKLFHLQILKHGFAYDVFLCNTLINVYVRVGDLASASKLFDEMPDRNSVSWACIVSGYTH 63
AK H +++ GF D+ L+++Y + G + A +FD MP +N +SW +++GY +
Sbjct: 344 AKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGN 403
Query: 64 KGMSNEACKMFKEMVRAGFLLNRYALGSVLRACQECG 100
G +A +MF+ M+ G N +VL AC+ G
Sbjct: 404 HGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSG 440
|
Length = 697 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 65.3 bits (159), Expect = 1e-10
Identities = 58/233 (24%), Positives = 105/233 (45%), Gaps = 43/233 (18%)
Query: 554 QRGQRLDHFTFATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRID 613
+ G + D + T++S CA ++ EV V A +E +V AL+D ++ G++
Sbjct: 465 EAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVA 524
Query: 614 YASRFFDLMPVRNVYS----WNSMISGYARHGHGDKALTLFSQMKLDGP--LPDHVTFVG 667
A + +M +NV +N++IS + G D+A + ++MK + PDH+T
Sbjct: 525 KAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGA 584
Query: 668 VLSACSHAGLVDEGFKHFKSMSQ--------VY--------------------------G 693
++ AC++AG VD + ++ + + VY G
Sbjct: 585 LMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKG 644
Query: 694 LIPQLEQFSCMVDLLGRAGELDKIEEFINKMP---ITPNSLIWRTVLGACCRA 743
+ P FS +VD+ G AG+LDK E + I ++ + +++GAC A
Sbjct: 645 VKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNA 697
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 54.7 bits (133), Expect = 8e-10
Identities = 15/49 (30%), Positives = 29/49 (59%)
Query: 626 NVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSH 674
+V ++N++I GY + G ++AL LF++MK G P+ T+ ++
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 59.9 bits (145), Expect = 5e-09
Identities = 43/167 (25%), Positives = 76/167 (45%), Gaps = 5/167 (2%)
Query: 563 TFATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLM 622
TF ++S CAS ++ + V A L+ D + + L+ +K G++D F M
Sbjct: 439 TFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEM 498
Query: 623 PVR----NVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLV 678
NV+++ ++I G AR G KA + M+ PD V F ++SAC +G V
Sbjct: 499 VNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAV 558
Query: 679 DEGFKHFKSM-SQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKM 724
D F M ++ + + P ++ AG++D+ +E +
Sbjct: 559 DRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMI 605
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 50.1 bits (121), Expect = 3e-08
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 4/50 (8%)
Query: 154 DLISWNSIISVYSQRGDTISVFKLFSRMQREGFRYSLKPNEYTFGSLITA 203
D++++N++I Y ++G KLF+ M++ G +KPN YT+ LI
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRG----IKPNVYTYSILIDG 47
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 50.3 bits (120), Expect = 4e-06
Identities = 46/199 (23%), Positives = 88/199 (44%), Gaps = 26/199 (13%)
Query: 560 DHFTFATVLSACASVATLERGMEV----HACGVRACLEFDVVIGSALVDMYSKCGRIDYA 615
DH T ++ ACA+ ++R EV H ++ E + + V+ S+ G D+A
Sbjct: 578 DHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPE----VYTIAVNSCSQKGDWDFA 633
Query: 616 SRFFDLMPVRNV------YSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVL 669
+D M + V +S ++G+A G DKA + + G V++ ++
Sbjct: 634 LSIYDDMKKKGVKPDEVFFSALVDVAGHA--GDLDKAFEILQDARKQGIKLGTVSYSSLM 691
Query: 670 SACSHAGLVDEG---FKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKMP- 725
ACS+A + ++ KS+ L P + + ++ L +L K E +++M
Sbjct: 692 GACSNAKNWKKALELYEDIKSI----KLRPTVSTMNALITALCEGNQLPKALEVLSEMKR 747
Query: 726 --ITPNSLIWRTVLGACCR 742
+ PN++ + +L A R
Sbjct: 748 LGLCPNTITYSILLVASER 766
|
Length = 1060 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 42.8 bits (102), Expect = 8e-06
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 628 YSWNSMISGYARHGHGDKALTLFSQMKLDG 657
++NS+ISGY + G ++AL LF +MK G
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKG 30
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 2e-05
Identities = 32/135 (23%), Positives = 63/135 (46%), Gaps = 10/135 (7%)
Query: 615 ASRFFDLMPVRNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSH 674
A RF L+ + ++N ++S A D AL + ++ G D + ++S C+
Sbjct: 425 AFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAK 484
Query: 675 AGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEF------INKMPITP 728
+G VD F+ F M G+ + F ++D RAG++ K F +K + P
Sbjct: 485 SGKVDAMFEVFHEMV-NAGVEANVHTFGALIDGCARAGQVAK--AFGAYGIMRSK-NVKP 540
Query: 729 NSLIWRTVLGACCRA 743
+ +++ ++ AC ++
Sbjct: 541 DRVVFNALISACGQS 555
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 42.4 bits (101), Expect = 2e-05
Identities = 14/47 (29%), Positives = 23/47 (48%)
Query: 50 NSVSWACIVSGYTHKGMSNEACKMFKEMVRAGFLLNRYALGSVLRAC 96
+ V++ ++ GY KG EA K+F EM + G N Y ++
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 41.6 bits (99), Expect = 3e-05
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Query: 19 DVFLCNTLINVYVRVGDLASASKLFDEMPDR----NSVSWACIVSGY 61
DV NTLI+ Y + G + A KLF+EM R N +++ ++ G
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 41.6 bits (99), Expect = 4e-05
Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 422 DQVSWNSVIGAFADSEALVSEAVKYYLDMRRAGWSPNGVTFINIL 466
D V++N++I + V EA+K + +M++ G PN T+ +IL
Sbjct: 2 DVVTYNTLIDGYCKKG-KVEEALKLFNEMKKRGIKPNVYTY-SIL 44
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 41.2 bits (98), Expect = 4e-05
Identities = 11/42 (26%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Query: 498 NALLSCYGKCGEMDDCEKIFARMSERR---DEVSWNSMISGY 536
N L+ Y K G++++ K+F M +R + +++ +I G
Sbjct: 7 NTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 5e-05
Identities = 73/358 (20%), Positives = 155/358 (43%), Gaps = 43/358 (12%)
Query: 360 LISTL-SSCASLGWIMLGQQIHGEGLKLGLDSDVSVSNALLSLYADAGYLSRCLKVFFLM 418
L +TL S+CA G + ++ E + G++++V AL+ A AG +++ + +M
Sbjct: 474 LYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIM 533
Query: 419 P----EHDQVSWNSVIGAFADSEALVSEAVKYYLDMRRAGW--SPNGVTFINILAAASSF 472
+ D+V +N++I A S A V A +M+ P+ +T ++ A ++
Sbjct: 534 RSKNVKPDRVVFNALISACGQSGA-VDRAFDVLAEMKAETHPIDPDHITVGALMKACANA 592
Query: 473 SMGKLGHQVHAQVIKYNVANETTIENALLSCYGKCGEMDDCEKIFARMSER---RDEVSW 529
+V+ + +YN+ + ++ + G+ D I+ M ++ DEV +
Sbjct: 593 GQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFF 652
Query: 530 NSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVATLERGMEVHACGVR 589
++++ H L KA ++ ++G +L ++++++ AC++ ++ +E++ ++
Sbjct: 653 SALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYE-DIK 711
Query: 590 ACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPVRNVYSWNSMISGYARHGHGDKALTL 649
+ K L P V + N++I+ KAL +
Sbjct: 712 S----------------IK------------LRP--TVSTMNALITALCEGNQLPKALEV 741
Query: 650 FSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDL 707
S+MK G P+ +T+ +L A D G S ++ G+ P L C+ L
Sbjct: 742 LSEMKRLGLCPNTITYSILLVASERKDDADVGLDLL-SQAKEDGIKPNLVMCRCITGL 798
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 7e-05
Identities = 12/48 (25%), Positives = 27/48 (56%)
Query: 525 DEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACA 572
D V++N++I GY + +A+ L M +RG + + +T++ ++
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 7e-05
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 628 YSWNSMISGYARHGHGDKALTLFSQMKLDGPLPD 661
++N++I G + G ++AL LF +MK G PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 38.2 bits (90), Expect = 3e-04
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 156 ISWNSIISVYSQRGDTISVFKLFSRMQREGF 186
+++NS+IS Y + G +LF M+ +G
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 38.9 bits (92), Expect = 3e-04
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 624 VRNVYSWNSMISGYARHGHGDKALTLFSQMK 654
+V ++N++I G R G D+A+ L +M+
Sbjct: 4 KPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 38.5 bits (91), Expect = 3e-04
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 15 GFAYDVFLCNTLINVYVRVGDLASASKLFDEMP 47
G DV NTLI+ R G + A +L DEM
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 0.001
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 320 KDSVSWNTMISGLDQNGCYEEAIMNFCAMRRDGLMSSNFS---LISTL 364
D V++NT+I G + G EEA+ F M++ G+ + ++ LI L
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 0.001
Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
Query: 595 DVVIGSALVDMYSKCGRIDYASRFFDLMPVR----NVYSWNSMISGYAR 639
DVV + L+D Y K G+++ A + F+ M R NVY+++ +I G +
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 36.7 bits (86), Expect = 0.001
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 52 VSWACIVSGYTHKGMSNEACKMFKEMVRAGFLLN 85
V++ ++ G G EA ++FKEM G +
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 35.6 bits (83), Expect = 0.003
Identities = 9/31 (29%), Positives = 18/31 (58%)
Query: 627 VYSWNSMISGYARHGHGDKALTLFSQMKLDG 657
+ ++N+++ A+ G D AL + +MK G
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASG 31
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.1 bits (82), Expect = 0.004
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 52 VSWACIVSGYTHKGMSNEACKMFKEMVRAGF 82
V++ ++SGY G EA ++FKEM G
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 934 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PF14432 | 116 | DYW_deaminase: DYW family of nucleic acid deaminas | 99.97 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.94 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.93 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.93 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.9 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.85 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.84 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.81 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.78 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.78 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.77 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.76 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.74 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.73 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.72 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.72 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.72 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.71 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.71 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.69 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.69 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.67 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.63 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.59 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.56 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.55 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.49 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.46 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.44 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.43 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.37 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.33 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.33 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.33 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.32 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.28 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.27 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.27 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.26 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.26 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.26 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.23 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.23 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.22 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.19 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.17 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.17 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.17 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.16 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.11 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.06 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.04 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.04 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.04 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.03 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.0 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 98.99 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 98.98 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 98.98 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 98.97 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 98.93 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.93 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.89 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.86 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.85 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 98.85 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 98.84 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.83 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.82 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 98.8 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.8 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 98.79 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.78 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.75 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.73 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.69 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.68 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.66 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.65 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.64 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.61 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.61 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.57 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.55 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.53 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.53 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 98.46 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.44 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.44 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.43 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.43 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.4 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.38 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.32 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.31 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.27 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.26 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.24 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.23 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.23 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.17 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.12 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.11 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.11 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.1 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.1 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.09 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.08 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.08 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.06 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.06 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.06 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.02 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.0 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.0 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.99 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.97 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.96 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 97.94 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 97.9 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 97.89 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 97.89 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.87 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 97.85 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.84 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.82 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.8 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 97.79 | |
| PLN02789 | 320 | farnesyltranstransferase | 97.78 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.77 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.75 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 97.58 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.58 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.52 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 97.39 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.39 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.38 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.36 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.36 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.34 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.31 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.3 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.29 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.26 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.25 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.23 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.22 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.22 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.19 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.18 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.18 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.11 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.07 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 96.99 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 96.99 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 96.96 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 96.93 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 96.92 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 96.92 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.91 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.91 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 96.9 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.88 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 96.85 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 96.84 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.75 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 96.72 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 96.71 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 96.7 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 96.7 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.67 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.66 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 96.65 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.65 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.64 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 96.6 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 96.6 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 96.59 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 96.57 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.54 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 96.51 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 96.49 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.4 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.39 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.36 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 96.33 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.31 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.26 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.22 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.21 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.12 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 96.09 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 95.99 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 95.96 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 95.89 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 95.8 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 95.77 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 95.77 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 95.72 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 95.52 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.48 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.42 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 95.33 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 95.29 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 95.26 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.11 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.09 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 95.03 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 94.85 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 94.78 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 94.67 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 94.67 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 94.48 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 94.4 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 94.34 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 94.25 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 94.08 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 94.01 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 94.0 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 93.95 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 93.91 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 93.87 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 93.82 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 93.62 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 93.45 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 93.4 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 93.39 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 93.34 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 92.71 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 92.66 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 92.59 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 92.46 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 92.34 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 92.34 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 92.29 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 92.19 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 92.12 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 92.11 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 91.75 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 91.71 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 91.66 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 91.39 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 91.39 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 91.19 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 91.02 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 90.9 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 90.86 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 90.7 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 90.41 | |
| PRK09687 | 280 | putative lyase; Provisional | 90.36 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 90.25 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 90.02 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 89.97 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 89.93 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 89.91 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 89.75 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 89.58 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 89.48 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 88.83 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 88.82 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 88.72 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 88.45 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 88.13 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 88.13 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 88.05 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 88.01 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 87.95 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 87.92 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 87.44 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 87.39 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 87.14 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 86.91 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 86.8 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 86.51 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 86.41 | |
| KOG4279 | 1226 | consensus Serine/threonine protein kinase [Signal | 86.25 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 85.93 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 85.77 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 85.54 | |
| PRK09687 | 280 | putative lyase; Provisional | 85.53 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 84.43 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 84.26 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 83.28 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 83.26 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 82.67 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 82.51 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 82.44 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 82.03 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 81.93 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 81.6 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 81.55 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 80.93 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 80.24 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-149 Score=1350.55 Aligned_cols=809 Identities=35% Similarity=0.625 Sum_probs=794.7
Q ss_pred CCChhhHHHHHHHHhcCCChhhHHHHHHHHHHcCCCCCcccHHHHHHHhhhcCCCChhhhhHHHHHHHHhcCCCCchhhH
Q 046194 48 DRNSVSWACIVSGYTHKGMSNEACKMFKEMVRAGFLLNRYALGSVLRACQECGPSGFKFGMQVHCLVLKSNQTFDGLVSN 127 (934)
Q Consensus 48 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 127 (934)
.++..++|.++.+|++.|++++|+.+|+.|.+.|+.|+..+|..++++|... +.+..|.++|..+.+.|..+++.++|
T Consensus 48 ~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~n 125 (857)
T PLN03077 48 SSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWK--RAVEEGSRVCSRALSSHPSLGVRLGN 125 (857)
T ss_pred ccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhC--CCHHHHHHHHHHHHHcCCCCCchHHH
Confidence 4678889999999999999999999999999999999999999999999998 99999999999999999999999999
Q ss_pred HHHHHhhhCCCChHHHHHHhhccCCCCcccHHHHHHHHHcCCCchHHHHHHHHHHHccCCCCCCCCceeHHHHHHHHhcC
Q 046194 128 VLIAMYGSCLESTDCARRIFEEIETRDLISWNSIISVYSQRGDTISVFKLFSRMQREGFRYSLKPNEYTFGSLITAAYSS 207 (934)
Q Consensus 128 ~li~~y~~~~g~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~p~~~t~~~ll~a~~~~ 207 (934)
+|+++|+++ |+++.|+++|++|++||+++||+||++|++.|++++|+++|++|+..|+ .||.+||+++|++|+..
T Consensus 126 ~li~~~~~~-g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~----~Pd~~t~~~ll~~~~~~ 200 (857)
T PLN03077 126 AMLSMFVRF-GELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGV----RPDVYTFPCVLRTCGGI 200 (857)
T ss_pred HHHHHHHhC-CChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCC----CCChhHHHHHHHHhCCc
Confidence 999999999 9999999999999999999999999999999999999999999999999 99999999999999988
Q ss_pred ccccchHHHHHHHHHHHhCCCCCccchhHHHHHHHhcCChHHHHHHHHHhhhcccchhhhhhhhhhhhhHHHHHHHHHcC
Q 046194 208 VLSGSYLLQQILAMVKKAGLLSDLYVGSALVSGFARLGNFYYARKIFEQMIQKNVVSMNGLMEGRRKGKEVHGYLIRSGL 287 (934)
Q Consensus 208 ~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~ 287 (934)
+++.. ++++|+.+++.|+
T Consensus 201 ~~~~~--------------------------------------------------------------~~~~~~~~~~~g~ 218 (857)
T PLN03077 201 PDLAR--------------------------------------------------------------GREVHAHVVRFGF 218 (857)
T ss_pred cchhh--------------------------------------------------------------HHHHHHHHHHcCC
Confidence 87765 7888888889999
Q ss_pred CCchhHHHHHHHHhhccCChhHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHh
Q 046194 288 FDMVAVGNGLVNMYAKCGTIDDSRSVFRFMIGKDSVSWNTMISGLDQNGCYEEAIMNFCAMRRDGLMSSNFSLISTLSSC 367 (934)
Q Consensus 288 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 367 (934)
.||+.++|+||++|+++|++++|.++|++|+.+|+++||+||.+|+++|++++|+++|.+|.+.|+.||..||+.++.+|
T Consensus 219 ~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~ 298 (857)
T PLN03077 219 ELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISAC 298 (857)
T ss_pred CcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCchHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCccchHHHHHHHHhCCccHHHHHHHH
Q 046194 368 ASLGWIMLGQQIHGEGLKLGLDSDVSVSNALLSLYADAGYLSRCLKVFFLMPEHDQVSWNSVIGAFADSEALVSEAVKYY 447 (934)
Q Consensus 368 ~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~~A~~l~ 447 (934)
++.|+++.|+++|..+.+.|+.||..+||+|+++|+++|++++|.++|++|..+|.++||+||.+|++.|+. ++|+++|
T Consensus 299 ~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~-~~A~~lf 377 (857)
T PLN03077 299 ELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLP-DKALETY 377 (857)
T ss_pred HhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCH-HHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred HHHHHcCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccCCCcc
Q 046194 448 LDMRRAGWSPNGVTFINILAAASSFSMGKLGHQVHAQVIKYNVANETTIENALLSCYGKCGEMDDCEKIFARMSERRDEV 527 (934)
Q Consensus 448 ~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~ 527 (934)
++|.+.|+.||..||+.++.+|++.|+++.|.++|+.+.+.|+.++..++|+||++|+++|++++|.++|++|.++ |.+
T Consensus 378 ~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~-d~v 456 (857)
T PLN03077 378 ALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEK-DVI 456 (857)
T ss_pred HHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCC-Cee
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999987 999
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHH
Q 046194 528 SWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYS 607 (934)
Q Consensus 528 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~ 607 (934)
+||+||.+|+++|+.++|+.+|++|.. +++||..||+++|.+|++.|+++.+.++|..+.+.|+.+|..++|+||++|+
T Consensus 457 s~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~ 535 (857)
T PLN03077 457 SWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYV 535 (857)
T ss_pred eHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHH
Confidence 999999999999999999999999986 5999999999999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHhccCCCCCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHHHHHHHH
Q 046194 608 KCGRIDYASRFFDLMPVRNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGFKHFKS 687 (934)
Q Consensus 608 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 687 (934)
|+|++++|.++|+.+ .+|+++||+||.+|+++|+.++|+++|++|.+.|+.||.+||+.+|.+|++.|++++|.++|+.
T Consensus 536 k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~ 614 (857)
T PLN03077 536 RCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHS 614 (857)
T ss_pred HcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHH
Confidence 999999999999999 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCc
Q 046194 688 MSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKMPITPNSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAV 767 (934)
Q Consensus 688 m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 767 (934)
|.+++|+.|+..||++|+++|+|+|++++|.+++++|+++||..+|++|+.+|+.+ |+.+.|+.+++++++++|+++.
T Consensus 615 M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~--~~~e~~e~~a~~l~~l~p~~~~ 692 (857)
T PLN03077 615 MEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIH--RHVELGELAAQHIFELDPNSVG 692 (857)
T ss_pred HHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc--CChHHHHHHHHHHHhhCCCCcc
Confidence 99778999999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHHhCCCcCCCceeEEEeCCEEEEEEcCCCCCCChHHHHHHHHHHHHHHHHCCcccC
Q 046194 768 NYVLLANMYASGGKWEDVAKARKAMKEAEVKKEAGCSWVTMKDGVHVFVAGDESHPEKDLIYEKLKELNQKMRDAGYVPQ 847 (934)
Q Consensus 768 ~y~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~~~ 847 (934)
.|+.|+|+|++.|+|++|.++++.|+++|++|+||+|||++++++|.|.+||.+||+.++|+.+|++|.++|++.||+||
T Consensus 693 ~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~ 772 (857)
T PLN03077 693 YYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGS 772 (857)
T ss_pred hHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccCCchhhhhhhhcccHHHHHHHHhc-CCCCCcEEEEccccccCchhhHHHhHhhhhCcEEEEecCCcccccCCc
Q 046194 848 TKFALFDLEPESKEDLVSYHSEKIAVAFVLT-RNSKLPIRIMKNLRVCGDCHSAFKFISKIVGREIVLRDSNRFHHFNDG 926 (934)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~n~~~~~~ch~~~~~~s~~~~~~~~~~d~~~~h~f~~g 926 (934)
+.+++ ++++++||..|++||||||+||||| +|||+||||+||||||+|||+++||||++++|||||||++|||||+||
T Consensus 773 ~~~~~-~~~~~~k~~~~~~hse~la~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g 851 (857)
T PLN03077 773 ESSSM-DEIEVSKDDIFCGHSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVRREISVRDTEQFHHFKDG 851 (857)
T ss_pred cchhc-cccHHHHHHHHHhccHHHHHHHhhhcCCCCCeEEEeCCCEeCccHHHHHHHHHHHhCeEEEEecCCcceeCCCC
Confidence 99888 5578899999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 046194 927 KCSCGD 932 (934)
Q Consensus 927 ~csc~~ 932 (934)
+|||+|
T Consensus 852 ~csc~d 857 (857)
T PLN03077 852 ECSCGD 857 (857)
T ss_pred cccCCC
Confidence 999998
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-120 Score=1077.42 Aligned_cols=612 Identities=35% Similarity=0.649 Sum_probs=604.7
Q ss_pred CCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCC-CCCChhhHHHHHHHhhccCchHHHHHHHHHHhhhCCCCchhHHHH
Q 046194 319 GKDSVSWNTMISGLDQNGCYEEAIMNFCAMRRDG-LMSSNFSLISTLSSCASLGWIMLGQQIHGEGLKLGLDSDVSVSNA 397 (934)
Q Consensus 319 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~ 397 (934)
.++..+|+.+|.+|.+.|++++|+++|+.|...+ +.||..||+.++.+|++.++++.+.++|..|.+.|+.||..++|.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 3477899999999999999999999999998865 889999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChHHHHHHHhhCCCCCccchHHHHHHHHhCCccHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhccCCchH
Q 046194 398 LLSLYADAGYLSRCLKVFFLMPEHDQVSWNSVIGAFADSEALVSEAVKYYLDMRRAGWSPNGVTFINILAAASSFSMGKL 477 (934)
Q Consensus 398 li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~ 477 (934)
|+++|+++|+++.|.++|++|++||.++||++|.+|++.|+. ++|+++|++|.+.|+.|+..||+.++.+|+..|+.+.
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~-~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~ 242 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNY-REAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARA 242 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCH-HHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHH
Confidence 999999999999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 046194 478 GHQVHAQVIKYNVANETTIENALLSCYGKCGEMDDCEKIFARMSERRDEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQ 557 (934)
Q Consensus 478 a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 557 (934)
+.++|..+.+.|+.+|..++|+||++|+++|++++|.++|++|..+ |+++||+||.+|++.|++++|+++|++|...|+
T Consensus 243 ~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~-~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~ 321 (697)
T PLN03081 243 GQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEK-TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGV 321 (697)
T ss_pred HHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCC-ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999999999999987 999999999999999999999999999999999
Q ss_pred CCCHhHHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCCCCcccccHHHHHH
Q 046194 558 RLDHFTFATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPVRNVYSWNSMISGY 637 (934)
Q Consensus 558 ~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 637 (934)
.||..||++++.+|++.|.++.|.++|+.+.+.|+.||..++|+||++|+|+|++++|.++|++|.+||+++||+||.+|
T Consensus 322 ~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y 401 (697)
T PLN03081 322 SIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGY 401 (697)
T ss_pred CCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHH
Q 046194 638 ARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKI 717 (934)
Q Consensus 638 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A 717 (934)
+++|+.++|+++|++|.+.|+.||.+||++++.+|++.|++++|.++|+.|.+++|+.|+..+|++|+++|+++|++++|
T Consensus 402 ~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA 481 (697)
T PLN03081 402 GNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEA 481 (697)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHH
Confidence 99999999999999999999999999999999999999999999999999998889999999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHHhCCC
Q 046194 718 EEFINKMPITPNSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMKEAEV 797 (934)
Q Consensus 718 ~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 797 (934)
.+++++|+..|+..+|++|+.+|+.+ |+++.|+.+++++++++|++..+|..|+++|++.|+|++|.++++.|+++|+
T Consensus 482 ~~~~~~~~~~p~~~~~~~Ll~a~~~~--g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~ 559 (697)
T PLN03081 482 YAMIRRAPFKPTVNMWAALLTACRIH--KNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGL 559 (697)
T ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHc--CCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred cCCCceeEEEeCCEEEEEEcCCCCCCChHHHHHHHHHHHHHHHHCCcccCCCcccccCCchhhhhhhhcccHHHHHHHHh
Q 046194 798 KKEAGCSWVTMKDGVHVFVAGDESHPEKDLIYEKLKELNQKMRDAGYVPQTKFALFDLEPESKEDLVSYHSEKIAVAFVL 877 (934)
Q Consensus 798 ~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 877 (934)
+|.||+||+++.+.+|.|.+||.+||+.++|++++.+|..+|++.||.||+.++++++++++|+..|++||||||+||||
T Consensus 560 ~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~hsekla~a~~l 639 (697)
T PLN03081 560 SMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGL 639 (697)
T ss_pred ccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccHHHHHHHHHhccHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred c-CCCCCcEEEEccccccCchhhHHHhHhhhhCcEEEEecCCcccccCCcccCCCCCC
Q 046194 878 T-RNSKLPIRIMKNLRVCGDCHSAFKFISKIVGREIVLRDSNRFHHFNDGKCSCGDYW 934 (934)
Q Consensus 878 ~-~~~~~~~~~~~n~~~~~~ch~~~~~~s~~~~~~~~~~d~~~~h~f~~g~csc~~~~ 934 (934)
| +|||.||||+||||||+|||+|+||||+++||||||||++|||||+||+|||+|||
T Consensus 640 ~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d~w 697 (697)
T PLN03081 640 INTSEWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697 (697)
T ss_pred ccCCCCCeEEEecCCEECCCchhhHHHHhhhcceEEEEecCCccccCCCCcccccccC
Confidence 9 99999999999999999999999999999999999999999999999999999999
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-90 Score=841.05 Aligned_cols=622 Identities=29% Similarity=0.490 Sum_probs=596.8
Q ss_pred chhhHHHHHHHHhcCCCCchhhhHHHHHHhhcCChhhHHHhhccCCCCChhhHHHHHHHHhcCCChhhHHHHHHHHHHcC
Q 046194 2 KDAKLFHLQILKHGFAYDVFLCNTLINVYVRVGDLASASKLFDEMPDRNSVSWACIVSGYTHKGMSNEACKMFKEMVRAG 81 (934)
Q Consensus 2 ~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 81 (934)
..|.++|.++.+.|..+++.++|.||.+|+++|+++.|+++|++|++||+++||+||.+|++.|++++|+++|++|...|
T Consensus 103 ~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g 182 (857)
T PLN03077 103 EEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAG 182 (857)
T ss_pred HHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccHHHHHHHhhhcCCCChhhhhHHHHHHHHhcCCCCchhhHHHHHHhhhCCCChHHHHHHhhccCCCCcccHHHH
Q 046194 82 FLLNRYALGSVLRACQECGPSGFKFGMQVHCLVLKSNQTFDGLVSNVLIAMYGSCLESTDCARRIFEEIETRDLISWNSI 161 (934)
Q Consensus 82 ~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~~g~~~~a~~~f~~~~~~~~~~~~~l 161 (934)
+.||.+||+.+|++|+.. +++..++++|..+.+.|+.+|++++|+||.+|+++ |+++.|+++|++|++||+++||+|
T Consensus 183 ~~Pd~~t~~~ll~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~-g~~~~A~~lf~~m~~~d~~s~n~l 259 (857)
T PLN03077 183 VRPDVYTFPCVLRTCGGI--PDLARGREVHAHVVRFGFELDVDVVNALITMYVKC-GDVVSARLVFDRMPRRDCISWNAM 259 (857)
T ss_pred CCCChhHHHHHHHHhCCc--cchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcC-CCHHHHHHHHhcCCCCCcchhHHH
Confidence 999999999999999999 99999999999999999999999999999999999 999999999999999999999999
Q ss_pred HHHHHcCCCchHHHHHHHHHHHccCCCCCCCCceeHHHHHHHHhcCccccchHHHHHHHHHHHhCCCCCccchhHHHHHH
Q 046194 162 ISVYSQRGDTISVFKLFSRMQREGFRYSLKPNEYTFGSLITAAYSSVLSGSYLLQQILAMVKKAGLLSDLYVGSALVSGF 241 (934)
Q Consensus 162 i~~~~~~g~~~~A~~l~~~m~~~g~~~~~~p~~~t~~~ll~a~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~ 241 (934)
|.+|++.|++++|+++|++|++.|+ .||.+||+++|.+|++.++.+.
T Consensus 260 i~~~~~~g~~~eAl~lf~~M~~~g~----~Pd~~ty~~ll~a~~~~g~~~~----------------------------- 306 (857)
T PLN03077 260 ISGYFENGECLEGLELFFTMRELSV----DPDLMTITSVISACELLGDERL----------------------------- 306 (857)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCC----CCChhHHHHHHHHHHhcCChHH-----------------------------
Confidence 9999999999999999999999999 9999999999999998887766
Q ss_pred HhcCChHHHHHHHHHhhhcccchhhhhhhhhhhhhHHHHHHHHHcCCCchhHHHHHHHHhhccCChhHHHHHHhcCCCCC
Q 046194 242 ARLGNFYYARKIFEQMIQKNVVSMNGLMEGRRKGKEVHGYLIRSGLFDMVAVGNGLVNMYAKCGTIDDSRSVFRFMIGKD 321 (934)
Q Consensus 242 ~~~g~~~~A~~l~~~m~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~ 321 (934)
++++|+.+++.|+.||..+||+||++|+++|++++|.++|++|..||
T Consensus 307 ---------------------------------a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d 353 (857)
T PLN03077 307 ---------------------------------GREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKD 353 (857)
T ss_pred ---------------------------------HHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCC
Confidence 67777777788999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCchHHHHHHHHHHhhhCCCCchhHHHHHHHH
Q 046194 322 SVSWNTMISGLDQNGCYEEAIMNFCAMRRDGLMSSNFSLISTLSSCASLGWIMLGQQIHGEGLKLGLDSDVSVSNALLSL 401 (934)
Q Consensus 322 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~ 401 (934)
+++||+||.+|+++|++++|+++|++|.+.|+.||..||++++.+|++.|+++.|.++|+.+.+.|+.|+..++|+||++
T Consensus 354 ~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~ 433 (857)
T PLN03077 354 AVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEM 433 (857)
T ss_pred eeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCChHHHHHHHhhCCCCCccchHHHHHHHHhCCccHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhccCCchHHHHH
Q 046194 402 YADAGYLSRCLKVFFLMPEHDQVSWNSVIGAFADSEALVSEAVKYYLDMRRAGWSPNGVTFINILAAASSFSMGKLGHQV 481 (934)
Q Consensus 402 y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i 481 (934)
|+++|++++|.++|++|.++|+++||+||.+|+++|+. ++|+.+|++|.. +++||..||+++|.+|++.|+++.+.++
T Consensus 434 y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~-~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i 511 (857)
T PLN03077 434 YSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRC-FEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEI 511 (857)
T ss_pred HHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCH-HHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHH
Confidence 99999999999999999999999999999999999999 999999999986 6999999999999999999999999999
Q ss_pred HHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH
Q 046194 482 HAQVIKYNVANETTIENALLSCYGKCGEMDDCEKIFARMSERRDEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDH 561 (934)
Q Consensus 482 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 561 (934)
|..+.+.|+.++..++|+||++|+++|++++|.++|+.+ .||.++||+||.+|++.|+.++|+++|++|.+.|+.||.
T Consensus 512 ~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~ 589 (857)
T PLN03077 512 HAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDE 589 (857)
T ss_pred HHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCc
Confidence 999999999999999999999999999999999999999 459999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhchhhHHHHHHHHHHHH-HhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCC-CCCcccccHHHHHHHH
Q 046194 562 FTFATVLSACASVATLERGMEVHACGV-RACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMP-VRNVYSWNSMISGYAR 639 (934)
Q Consensus 562 ~t~~~ll~a~~~~~~~~~a~~i~~~~~-~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~ 639 (934)
.||+.+|.+|++.|.+++|.++|+.|. +.|+.|+..+|++++++|++.|++++|.+++++|+ +||..+|++|+.+|..
T Consensus 590 ~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~ 669 (857)
T PLN03077 590 VTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRI 669 (857)
T ss_pred ccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999 68999999999999999999999999999999996 7899999999999999
Q ss_pred cCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcc
Q 046194 640 HGHGDKALTLFSQMKLDGPLPDH-VTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLE 699 (934)
Q Consensus 640 ~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~ 699 (934)
+|+.+.+....+++.+ +.|+. ..|..+...|+..|++++|.++.+.|.+. |+++++.
T Consensus 670 ~~~~e~~e~~a~~l~~--l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~-g~~k~~g 727 (857)
T PLN03077 670 HRHVELGELAAQHIFE--LDPNSVGYYILLCNLYADAGKWDEVARVRKTMREN-GLTVDPG 727 (857)
T ss_pred cCChHHHHHHHHHHHh--hCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHc-CCCCCCC
Confidence 9999999988888887 56764 45666667899999999999999999885 8887753
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-68 Score=634.65 Aligned_cols=473 Identities=23% Similarity=0.371 Sum_probs=444.3
Q ss_pred CChhhHHHHHHHHhcCCChhhHHHHHHHHHHcC-CCCCcccHHHHHHHhhhcCCCChhhhhHHHHHHHHhcCCCCchhhH
Q 046194 49 RNSVSWACIVSGYTHKGMSNEACKMFKEMVRAG-FLLNRYALGSVLRACQECGPSGFKFGMQVHCLVLKSNQTFDGLVSN 127 (934)
Q Consensus 49 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 127 (934)
++..+|+.+|.+|.+.|++++|+++|+.|...+ ..||..||+.+|.+|++. +++..+.++|..+.+.|+.||+.++|
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~--~~~~~a~~l~~~m~~~g~~~~~~~~n 162 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIAL--KSIRCVKAVYWHVESSGFEPDQYMMN 162 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHhCCCcchHHHH
Confidence 467799999999999999999999999999865 789999999999999999 99999999999999999999999999
Q ss_pred HHHHHhhhCCCChHHHHHHhhccCCCCcccHHHHHHHHHcCCCchHHHHHHHHHHHccCCCCCCCCceeHHHHHHHHhcC
Q 046194 128 VLIAMYGSCLESTDCARRIFEEIETRDLISWNSIISVYSQRGDTISVFKLFSRMQREGFRYSLKPNEYTFGSLITAAYSS 207 (934)
Q Consensus 128 ~li~~y~~~~g~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~p~~~t~~~ll~a~~~~ 207 (934)
+|+.+|+++ |+++.|+++|++|++||+++||+||.+|++.|++++|+++|++|.+.|+ .||..||+.+|++|++.
T Consensus 163 ~Li~~y~k~-g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~----~p~~~t~~~ll~a~~~~ 237 (697)
T PLN03081 163 RVLLMHVKC-GMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGS----DAEPRTFVVMLRASAGL 237 (697)
T ss_pred HHHHHHhcC-CCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCC----CCChhhHHHHHHHHhcC
Confidence 999999999 9999999999999999999999999999999999999999999999999 99999999999999998
Q ss_pred ccccchHHHHHHHHHHHhCCCCCccchhHHHHHHHhcCChHHHHHHHHHhhhcccchhhhhhhhhhhhhHHHHHHHHHcC
Q 046194 208 VLSGSYLLQQILAMVKKAGLLSDLYVGSALVSGFARLGNFYYARKIFEQMIQKNVVSMNGLMEGRRKGKEVHGYLIRSGL 287 (934)
Q Consensus 208 ~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~ 287 (934)
+.... ++++|+.+.+.|+
T Consensus 238 ~~~~~--------------------------------------------------------------~~~l~~~~~~~g~ 255 (697)
T PLN03081 238 GSARA--------------------------------------------------------------GQQLHCCVLKTGV 255 (697)
T ss_pred CcHHH--------------------------------------------------------------HHHHHHHHHHhCC
Confidence 87655 7888888889999
Q ss_pred CCchhHHHHHHHHhhccCChhHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHh
Q 046194 288 FDMVAVGNGLVNMYAKCGTIDDSRSVFRFMIGKDSVSWNTMISGLDQNGCYEEAIMNFCAMRRDGLMSSNFSLISTLSSC 367 (934)
Q Consensus 288 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 367 (934)
.+|.+++|+||++|+++|++++|.++|++|+++|+++||+||.+|+++|++++|+++|++|.+.|+.||..||++++++|
T Consensus 256 ~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~ 335 (697)
T PLN03081 256 VGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIF 335 (697)
T ss_pred CccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCchHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCccchHHHHHHHHhCCccHHHHHHHH
Q 046194 368 ASLGWIMLGQQIHGEGLKLGLDSDVSVSNALLSLYADAGYLSRCLKVFFLMPEHDQVSWNSVIGAFADSEALVSEAVKYY 447 (934)
Q Consensus 368 ~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~~A~~l~ 447 (934)
++.|+++.|+++|+.|.+.|+.||..++++||++|+++|++++|.++|++|.++|+++||+||.+|++.|+. ++|+++|
T Consensus 336 ~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~-~~A~~lf 414 (697)
T PLN03081 336 SRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRG-TKAVEMF 414 (697)
T ss_pred HhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCH-HHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred HHHHHcCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHH-hcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccCCCc
Q 046194 448 LDMRRAGWSPNGVTFINILAAASSFSMGKLGHQVHAQVIK-YNVANETTIENALLSCYGKCGEMDDCEKIFARMSERRDE 526 (934)
Q Consensus 448 ~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~ 526 (934)
++|.+.|+.||..||++++.+|++.|.+++|.++|..|.+ .|+.|+..+|+.++++|++.|++++|.++|++|+..|+.
T Consensus 415 ~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~ 494 (697)
T PLN03081 415 ERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTV 494 (697)
T ss_pred HHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCH
Confidence 9999999999999999999999999999999999999976 699999999999999999999999999999999888999
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HhHHHHHHHHHhchhhHHHHHHHHHHHHHhCCC
Q 046194 527 VSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLD-HFTFATVLSACASVATLERGMEVHACGVRACLE 593 (934)
Q Consensus 527 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~ 593 (934)
.+|++|+.+|...|+.+.|..+++++.. +.|+ ..+|..+++.|++.|++++|.++++.|.+.|+.
T Consensus 495 ~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~ 560 (697)
T PLN03081 495 NMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLS 560 (697)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCc
Confidence 9999999999999999999999988864 4453 456666666666666666666666666665554
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-67 Score=624.39 Aligned_cols=530 Identities=16% Similarity=0.219 Sum_probs=478.1
Q ss_pred CCCcccHHHHHHHHHcCCCchHHHHHHHHHHHccCCCCCCCCceeHHHHHHHHhcCccccchHHHHHHHHHHHhCCCCCc
Q 046194 152 TRDLISWNSIISVYSQRGDTISVFKLFSRMQREGFRYSLKPNEYTFGSLITAAYSSVLSGSYLLQQILAMVKKAGLLSDL 231 (934)
Q Consensus 152 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~p~~~t~~~ll~a~~~~~~~~~~~a~~i~~~~~~~g~~~~~ 231 (934)
.++...|..++..+++.|++++|+++|++|...|+ +.|+..+++.++.+|.+.+.... |..+++.|.. ||.
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gv---v~~~~v~~~~li~~~~~~g~~~e--Al~lf~~M~~----pd~ 437 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGL---LDMDKIYHAKFFKACKKQRAVKE--AFRFAKLIRN----PTL 437 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCC---CCchHHHHHHHHHHHHHCCCHHH--HHHHHHHcCC----CCH
Confidence 35677799999999999999999999999998885 25788888899999998888877 8888887764 899
Q ss_pred cchhHHHHHHHhcCChHHHHHHHHHhhhcccchhhhhhhhhhhhhHHHHHHHHHcCCCchhHHHHHHHHhhccCChhHHH
Q 046194 232 YVGSALVSGFARLGNFYYARKIFEQMIQKNVVSMNGLMEGRRKGKEVHGYLIRSGLFDMVAVGNGLVNMYAKCGTIDDSR 311 (934)
Q Consensus 232 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 311 (934)
.+|+.||.+|++.|+++.|.++|++|. +.|+.||..+||+||++|+++|++++|.
T Consensus 438 ~Tyn~LL~a~~k~g~~e~A~~lf~~M~-------------------------~~Gl~pD~~tynsLI~~y~k~G~vd~A~ 492 (1060)
T PLN03218 438 STFNMLMSVCASSQDIDGALRVLRLVQ-------------------------EAGLKADCKLYTTLISTCAKSGKVDAMF 492 (1060)
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHHH-------------------------HcCCCCCHHHHHHHHHHHHhCcCHHHHH
Confidence 999999999999999999999998886 4588999999999999999999999999
Q ss_pred HHHhcCC----CCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCchHHHHHHHHHHhh--
Q 046194 312 SVFRFMI----GKDSVSWNTMISGLDQNGCYEEAIMNFCAMRRDGLMSSNFSLISTLSSCASLGWIMLGQQIHGEGLK-- 385 (934)
Q Consensus 312 ~~f~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-- 385 (934)
++|++|. .||..+||+||.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|++.|+++.|.++|+.|.+
T Consensus 493 ~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~ 572 (1060)
T PLN03218 493 EVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAET 572 (1060)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhc
Confidence 9999996 5799999999999999999999999999999999999999999999999999999999999999986
Q ss_pred hCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC----CCccchHHHHHHHHhCCccHHHHHHHHHHHHHcCCCCCccc
Q 046194 386 LGLDSDVSVSNALLSLYADAGYLSRCLKVFFLMPE----HDQVSWNSVIGAFADSEALVSEAVKYYLDMRRAGWSPNGVT 461 (934)
Q Consensus 386 ~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t 461 (934)
.|+.||..+|++||++|+++|++++|.++|+.|.+ ++..+||++|.+|++.|+. ++|+++|++|.+.|+.||..|
T Consensus 573 ~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~-deAl~lf~eM~~~Gv~PD~~T 651 (1060)
T PLN03218 573 HPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDW-DFALSIYDDMKKKGVKPDEVF 651 (1060)
T ss_pred CCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCCCCHHH
Confidence 67899999999999999999999999999999975 5678999999999999999 999999999999999999999
Q ss_pred HHHHHHHHhccCCchHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhcc---CCCcchHHHHHHHHHh
Q 046194 462 FINILAAASSFSMGKLGHQVHAQVIKYNVANETTIENALLSCYGKCGEMDDCEKIFARMSE---RRDEVSWNSMISGYIH 538 (934)
Q Consensus 462 ~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~p~~~~~~~li~~~~~ 538 (934)
|+.++.+|++.|+++.|.+++..|.+.|+.|+..+|++||.+|+++|++++|.++|++|.. .||.++||+||.+|++
T Consensus 652 ynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k 731 (1060)
T PLN03218 652 FSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCE 731 (1060)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999976 3899999999999999
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHH----HhcCCHHH
Q 046194 539 NELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVDMY----SKCGRIDY 614 (934)
Q Consensus 539 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y----~~~g~~~~ 614 (934)
.|++++|+++|++|...|+.||..||+.++.+|++.|+++.|.++|.+|.+.|+.||..+|++|+.++ .+++...+
T Consensus 732 ~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~ 811 (1060)
T PLN03218 732 GNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGE 811 (1060)
T ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999874 34444444
Q ss_pred HHHHhccCCCCCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCC
Q 046194 615 ASRFFDLMPVRNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGL 694 (934)
Q Consensus 615 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~ 694 (934)
+...|+.+...+...| .++|+.+|++|++.|+.||..||+.+|.++...+..+.+..+++.|... +.
T Consensus 812 ~v~~f~~g~~~~~n~w------------~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~-~~ 878 (1060)
T PLN03218 812 PVVSFDSGRPQIENKW------------TSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGIS-AD 878 (1060)
T ss_pred hhhhhhccccccccch------------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccC-CC
Confidence 4444544333333444 4569999999999999999999999997777888888888888777653 67
Q ss_pred CCCcccHHHHHHHHhhcCChHHHHHHHHhC---CCCCCHH
Q 046194 695 IPQLEQFSCMVDLLGRAGELDKIEEFINKM---PITPNSL 731 (934)
Q Consensus 695 ~p~~~~y~~li~~l~~~g~~~~A~~~~~~m---~~~p~~~ 731 (934)
.|+..+|++|++++++. .++|..++++| ++.|+..
T Consensus 879 ~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 879 SQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred CcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 77789999999998543 47899999999 7888765
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-67 Score=618.65 Aligned_cols=533 Identities=15% Similarity=0.200 Sum_probs=423.9
Q ss_pred cCCCCchhhhHHHHHHhhcCChhhHHHhhccCCCCChh-----hHHHHHHHHhcCCChhhHHHHHHHHHHcCCCCCcccH
Q 046194 15 GFAYDVFLCNTLINVYVRVGDLASASKLFDEMPDRNSV-----SWACIVSGYTHKGMSNEACKMFKEMVRAGFLLNRYAL 89 (934)
Q Consensus 15 g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~-----~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~ 89 (934)
+-.++...|..+++.|++.|++++|.++|++|+.++.. .++.++.+|++.|..++|+.+|+.|.. ||..+|
T Consensus 365 ~~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Ty 440 (1060)
T PLN03218 365 SGKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTF 440 (1060)
T ss_pred CCCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHH
Confidence 34567778999999999999999999999999876554 445667779999999999999988864 899999
Q ss_pred HHHHHHhhhcCCCChhhhhHHHHHHHHhcCCCCchhhHHHHHHhhhCCCChHHHHHHhhccC----CCCcccHHHHHHHH
Q 046194 90 GSVLRACQECGPSGFKFGMQVHCLVLKSNQTFDGLVSNVLIAMYGSCLESTDCARRIFEEIE----TRDLISWNSIISVY 165 (934)
Q Consensus 90 ~~ll~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~~g~~~~a~~~f~~~~----~~~~~~~~~li~~~ 165 (934)
+.+|.+|++. ++++.|.+++..|.+.|+.||..+||+||.+|+++ |+++.|.++|++|. .||+++||+||.+|
T Consensus 441 n~LL~a~~k~--g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~-G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy 517 (1060)
T PLN03218 441 NMLMSVCASS--QDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKS-GKVDAMFEVFHEMVNAGVEANVHTFGALIDGC 517 (1060)
T ss_pred HHHHHHHHhC--cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC-cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 9999999998 88999999999999999888888888888888888 88888888888887 47888888888888
Q ss_pred HcCCCchHHHHHHHHHHHccCCCCCCCCceeHHHHHHHHhcCccccchHHHHHHHHHHH--hCCCCCccchhHHHHHHHh
Q 046194 166 SQRGDTISVFKLFSRMQREGFRYSLKPNEYTFGSLITAAYSSVLSGSYLLQQILAMVKK--AGLLSDLYVGSALVSGFAR 243 (934)
Q Consensus 166 ~~~g~~~~A~~l~~~m~~~g~~~~~~p~~~t~~~ll~a~~~~~~~~~~~a~~i~~~~~~--~g~~~~~~~~~~li~~~~~ 243 (934)
++.|++++|+++|++|+..|+ .||..||+++|.+|++.|+.+. |.++++.|.+ .|+.||..+|++||.+|++
T Consensus 518 ~k~G~~eeAl~lf~~M~~~Gv----~PD~vTYnsLI~a~~k~G~~de--A~~lf~eM~~~~~gi~PD~vTynaLI~ay~k 591 (1060)
T PLN03218 518 ARAGQVAKAFGAYGIMRSKNV----KPDRVVFNALISACGQSGAVDR--AFDVLAEMKAETHPIDPDHITVGALMKACAN 591 (1060)
T ss_pred HHCcCHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHHHHCCCHHH--HHHHHHHHHHhcCCCCCcHHHHHHHHHHHHH
Confidence 888888888888888888887 7777777777776666665555 5555555544 3444555555555555555
Q ss_pred cCChHHHHHHHHHhhhcccchhhhhhhhhhhhhHHHHHHHHHcCCCchhHHHHHHHHhhccCChhHHHHHHhcCCCCCcc
Q 046194 244 LGNFYYARKIFEQMIQKNVVSMNGLMEGRRKGKEVHGYLIRSGLFDMVAVGNGLVNMYAKCGTIDDSRSVFRFMIGKDSV 323 (934)
Q Consensus 244 ~g~~~~A~~l~~~m~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~ 323 (934)
.|++++|.++|++|.+. | ..++..
T Consensus 592 ~G~ldeA~elf~~M~e~-------------------------g-------------------------------i~p~~~ 615 (1060)
T PLN03218 592 AGQVDRAKEVYQMIHEY-------------------------N-------------------------------IKGTPE 615 (1060)
T ss_pred CCCHHHHHHHHHHHHHc-------------------------C-------------------------------CCCChH
Confidence 55555555444444322 1 134667
Q ss_pred cHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCchHHHHHHHHHHhhhCCCCchhHHHHHHHHHH
Q 046194 324 SWNTMISGLDQNGCYEEAIMNFCAMRRDGLMSSNFSLISTLSSCASLGWIMLGQQIHGEGLKLGLDSDVSVSNALLSLYA 403 (934)
Q Consensus 324 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~ 403 (934)
+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++|+.|.+.|+.||..+|++||++|+
T Consensus 616 tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~ 695 (1060)
T PLN03218 616 VYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACS 695 (1060)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 88888888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHhhCC----CCCccchHHHHHHHHhCCccHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhccCCchHHH
Q 046194 404 DAGYLSRCLKVFFLMP----EHDQVSWNSVIGAFADSEALVSEAVKYYLDMRRAGWSPNGVTFINILAAASSFSMGKLGH 479 (934)
Q Consensus 404 ~~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~ 479 (934)
++|++++|.++|++|. .||.++||+||.+|++.|+. ++|+++|++|...|+.||..||+.++.+|++.|+++.|.
T Consensus 696 k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~-eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~ 774 (1060)
T PLN03218 696 NAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQL-PKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGL 774 (1060)
T ss_pred hCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 9999999999999985 58999999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHH----hcCCHHHHHHHHHhhccCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 046194 480 QVHAQVIKYNVANETTIENALLSCYG----KCGEMDDCEKIFARMSERRDEVSWNSMISGYIHNELLPKAMNLVWFMMQR 555 (934)
Q Consensus 480 ~i~~~~~~~g~~~~~~~~~~li~~~~----~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 555 (934)
++|..|.+.|+.||..+|++|+.+|. +++...++...|+.+... +...|+ ++|+.+|++|++.
T Consensus 775 ~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~-~~n~w~------------~~Al~lf~eM~~~ 841 (1060)
T PLN03218 775 DLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQ-IENKWT------------SWALMVYRETISA 841 (1060)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccc-cccchH------------HHHHHHHHHHHHC
Confidence 99999999999999999999998743 333333333334322222 333343 5699999999999
Q ss_pred CCCCCHhHHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCCCCcccccHHHH
Q 046194 556 GQRLDHFTFATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPVRNVYSWNSMIS 635 (934)
Q Consensus 556 g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~ 635 (934)
|+.||..||+.+|.+++..+..+.+..+++.+...+..|+.. +|+++|.
T Consensus 842 Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~-------------------------------~y~~Li~ 890 (1060)
T PLN03218 842 GTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQS-------------------------------NLSTLVD 890 (1060)
T ss_pred CCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchh-------------------------------hhHHHHH
Confidence 999999999988865555555555555555554444444444 4555555
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCChh
Q 046194 636 GYARHGHGDKALTLFSQMKLDGPLPDHV 663 (934)
Q Consensus 636 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 663 (934)
++.+. .++|+.+|++|.+.|+.|+..
T Consensus 891 g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 891 GFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred hhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 54321 368999999999999999975
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=376.33 Aligned_cols=765 Identities=11% Similarity=0.020 Sum_probs=450.6
Q ss_pred hhhHHHHHHHHhcCCCCchhhhHHHHHHhhcCChhhHHHhhccCCC----CChhhHHHHHHHHhcCCChhhHHHHHHHHH
Q 046194 3 DAKLFHLQILKHGFAYDVFLCNTLINVYVRVGDLASASKLFDEMPD----RNSVSWACIVSGYTHKGMSNEACKMFKEMV 78 (934)
Q Consensus 3 ~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 78 (934)
.|...+......+.. +......+...|.+.|+++.|...|..... .....+..+...|.+.|++++|...|+.+.
T Consensus 74 ~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 152 (899)
T TIGR02917 74 AAEKELRKALSLGYP-KNQVLPLLARAYLLQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQAL 152 (899)
T ss_pred HHHHHHHHHHHcCCC-hhhhHHHHHHHHHHCCCHHHHHHhhcccccCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 455667777766653 344556677788888999999998877652 234566777778888889999999888887
Q ss_pred HcCCCCCcccHHHHHHHhhhcCCCChhhhhHHHHHHHHhcCCCCchhhHHHHHHhhhCCCChHHHHHHhhccCC---CCc
Q 046194 79 RAGFLLNRYALGSVLRACQECGPSGFKFGMQVHCLVLKSNQTFDGLVSNVLIAMYGSCLESTDCARRIFEEIET---RDL 155 (934)
Q Consensus 79 ~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~~g~~~~a~~~f~~~~~---~~~ 155 (934)
+... .+...+..+...+... ++...+..+...+++.. ..+...+..+...|... |+.+.|.+.|+.... .+.
T Consensus 153 ~~~~-~~~~~~~~la~~~~~~--~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-g~~~~A~~~~~~a~~~~p~~~ 227 (899)
T TIGR02917 153 AIDP-RSLYAKLGLAQLALAE--NRFDEARALIDEVLTAD-PGNVDALLLKGDLLLSL-GNIELALAAYRKAIALRPNNP 227 (899)
T ss_pred hcCC-CChhhHHHHHHHHHHC--CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHhc-CCHHHHHHHHHHHHhhCCCCH
Confidence 6542 2334556666666666 88888888888877754 24556677777777777 888888888877643 345
Q ss_pred ccHHHHHHHHHcCCCchHHHHHHHHHHHccCCCCCCCCceeHHHHHHHHhcCccccchHHHHHHHHHHHhCCCCCccchh
Q 046194 156 ISWNSIISVYSQRGDTISVFKLFSRMQREGFRYSLKPNEYTFGSLITAAYSSVLSGSYLLQQILAMVKKAGLLSDLYVGS 235 (934)
Q Consensus 156 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~p~~~t~~~ll~a~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~ 235 (934)
..|..+...+...|++++|...++.+.+... .+..............|+.+. |...++.+.+.+.. +...+.
T Consensus 228 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~--A~~~~~~~l~~~~~-~~~~~~ 299 (899)
T TIGR02917 228 AVLLALATILIEAGEFEEAEKHADALLKKAP-----NSPLAHYLKALVDFQKKNYED--ARETLQDALKSAPE-YLPALL 299 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CCchHHHHHHHHHHHhcCHHH--HHHHHHHHHHhCCC-chhHHH
Confidence 5678888888888888888888888876532 222222222223345566655 77777777665422 123344
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhcccchhh---hhh------hhhhhhhHHHHHHHHHcCCCchhHHHHHHHHhhccCC
Q 046194 236 ALVSGFARLGNFYYARKIFEQMIQKNVVSMN---GLM------EGRRKGKEVHGYLIRSGLFDMVAVGNGLVNMYAKCGT 306 (934)
Q Consensus 236 ~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~---~~l------~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 306 (934)
.+...+...|++++|...|+++.+.++.... .+. +....+......+++.. +.+..+++.+...|.+.|+
T Consensus 300 ~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~ 378 (899)
T TIGR02917 300 LAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGD 378 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCC
Confidence 4555666777777777777777554332211 111 22333333333333322 2345566667777777777
Q ss_pred hhHHHHHHhcCCC---CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCchHHHHHHHHHH
Q 046194 307 IDDSRSVFRFMIG---KDSVSWNTMISGLDQNGCYEEAIMNFCAMRRDGLMSSNFSLISTLSSCASLGWIMLGQQIHGEG 383 (934)
Q Consensus 307 ~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~ 383 (934)
+++|.+.|+++.+ .+...|..+...+...|++++|++.|..+.+.... +......++..+...|+++.+..++..+
T Consensus 379 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 457 (899)
T TIGR02917 379 FEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKL 457 (899)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 7777777766533 24445666666666777777777777666653311 1223333445555666666666666666
Q ss_pred hhhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC---CCccchHHHHHHHHhCCccHHHHHHHHHHHHHcCCCCCcc
Q 046194 384 LKLGLDSDVSVSNALLSLYADAGYLSRCLKVFFLMPE---HDQVSWNSVIGAFADSEALVSEAVKYYLDMRRAGWSPNGV 460 (934)
Q Consensus 384 ~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~ 460 (934)
.+. .+.+..++..+...|...|++++|...|+++.+ .+...+..+...+...|+. ++|.+.|+++.... +.+..
T Consensus 458 ~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~~~~~~-~~~~~ 534 (899)
T TIGR02917 458 EKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNP-DDAIQRFEKVLTID-PKNLR 534 (899)
T ss_pred HHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhC-cCcHH
Confidence 543 234455566666666666666666666665432 2344455555666666666 66666666665532 22344
Q ss_pred cHHHHHHHHhccCCchHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccC--CCcchHHHHHHHHHh
Q 046194 461 TFINILAAASSFSMGKLGHQVHAQVIKYNVANETTIENALLSCYGKCGEMDDCEKIFARMSER--RDEVSWNSMISGYIH 538 (934)
Q Consensus 461 t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--p~~~~~~~li~~~~~ 538 (934)
++..+...+...|+.+.+...+..+.+.+ +.+...+..+...|.+.|++++|..+++.+... .+...|..+...|..
T Consensus 535 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 613 (899)
T TIGR02917 535 AILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLA 613 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 55555555566666666666666655443 223344555666666666666666666665442 244556666666666
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHH
Q 046194 539 NELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRF 618 (934)
Q Consensus 539 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~ 618 (934)
.|++++|+..|+++.... +.+...+..+..++...|++++|..++..+.+.. +.+...+..++..+.+.|++++|.++
T Consensus 614 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 691 (899)
T TIGR02917 614 AGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKI 691 (899)
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 666666666666665432 2233445555555666666666666666555432 22345555566666666666666666
Q ss_pred hccCCC---CCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCC
Q 046194 619 FDLMPV---RNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLI 695 (934)
Q Consensus 619 ~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~ 695 (934)
++.+.. .+...|..+...+...|++++|++.|+++.+. .|+..++..+..++.+.|++++|.+.++.+.+. .+
T Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~~ 767 (899)
T TIGR02917 692 AKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKT--HP 767 (899)
T ss_pred HHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CC
Confidence 665542 23334555555566666666666666666553 344445555555556666666666666655542 22
Q ss_pred CCcccHHHHHHHHhhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHH
Q 046194 696 PQLEQFSCMVDLLGRAGELDKIEEFINKM-PI-TPNSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLA 773 (934)
Q Consensus 696 p~~~~y~~li~~l~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~ 773 (934)
.+...+..+...|.+.|++++|.+.|+++ .. ++++.++..+...+... |+ +.|...+++++++.|+++..+..++
T Consensus 768 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~--~~-~~A~~~~~~~~~~~~~~~~~~~~~~ 844 (899)
T TIGR02917 768 NDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLEL--KD-PRALEYAEKALKLAPNIPAILDTLG 844 (899)
T ss_pred CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc--Cc-HHHHHHHHHHHhhCCCCcHHHHHHH
Confidence 33555555556666666666666666555 22 23344555555555555 55 5555555555555555555555555
Q ss_pred HHHHcCCChHHHHHHHHHHHhCC
Q 046194 774 NMYASGGKWEDVAKARKAMKEAE 796 (934)
Q Consensus 774 ~~~~~~g~~~~a~~~~~~m~~~~ 796 (934)
.+|...|++++|.+.++++.+.+
T Consensus 845 ~~~~~~g~~~~A~~~~~~a~~~~ 867 (899)
T TIGR02917 845 WLLVEKGEADRALPLLRKAVNIA 867 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhC
Confidence 55555555555555555555433
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-36 Score=374.51 Aligned_cols=668 Identities=10% Similarity=-0.001 Sum_probs=518.9
Q ss_pred CChhhhhHHHHHHHHhcCCCCchhhHHHHHHhhhCCCChHHHHHHhhccCC---CCcccHHHHHHHHHcCCCchHHHHHH
Q 046194 102 SGFKFGMQVHCLVLKSNQTFDGLVSNVLIAMYGSCLESTDCARRIFEEIET---RDLISWNSIISVYSQRGDTISVFKLF 178 (934)
Q Consensus 102 ~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~~g~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~ 178 (934)
+++..|...+..+++... .+...+..+...|... |+++.|.++++.+.. ++...|..+...+...|++++|...|
T Consensus 139 ~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 216 (899)
T TIGR02917 139 GQLELAQKSYEQALAIDP-RSLYAKLGLAQLALAE-NRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAY 216 (899)
T ss_pred CCHHHHHHHHHHHHhcCC-CChhhHHHHHHHHHHC-CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHH
Confidence 566666666666655443 2344555666666666 677777776665532 23345666666666677777777777
Q ss_pred HHHHHccCCCCCCCCceeHHHHHHHHhcCccccchHHHHHHHHHHHhCCCCCccchhHHHHHHHhcCChHHHHHHHHHhh
Q 046194 179 SRMQREGFRYSLKPNEYTFGSLITAAYSSVLSGSYLLQQILAMVKKAGLLSDLYVGSALVSGFARLGNFYYARKIFEQMI 258 (934)
Q Consensus 179 ~~m~~~g~~~~~~p~~~t~~~ll~a~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 258 (934)
++..... +.+..++..+...+...|+.+. |...++.+.+.... +...+......+...|++++|...|+++.
T Consensus 217 ~~a~~~~-----p~~~~~~~~~~~~~~~~g~~~~--A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~l 288 (899)
T TIGR02917 217 RKAIALR-----PNNPAVLLALATILIEAGEFEE--AEKHADALLKKAPN-SPLAHYLKALVDFQKKNYEDARETLQDAL 288 (899)
T ss_pred HHHHhhC-----CCCHHHHHHHHHHHHHcCCHHH--HHHHHHHHHHhCCC-CchHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 7666543 3345555556666666666666 66666666654422 22233334444556677777777777765
Q ss_pred hcccchhhhhh---------hhhhhhhHHHHHHHHHcCCCchhHHHHHHHHhhccCChhHHHHHHhcCCCC---CcccHH
Q 046194 259 QKNVVSMNGLM---------EGRRKGKEVHGYLIRSGLFDMVAVGNGLVNMYAKCGTIDDSRSVFRFMIGK---DSVSWN 326 (934)
Q Consensus 259 ~~~~~~~~~~l---------~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~---~~~~~~ 326 (934)
+.++....+.. +....+...+..+++.. +.+......+...+.+.|++++|...++.+... +...|+
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 367 (899)
T TIGR02917 289 KSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALS 367 (899)
T ss_pred HhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHH
Confidence 54433221111 33444555555555443 345667778888999999999999999887543 566888
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHCCCCCC-hhhHHHHHHHhhccCchHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhc
Q 046194 327 TMISGLDQNGCYEEAIMNFCAMRRDGLMSS-NFSLISTLSSCASLGWIMLGQQIHGEGLKLGLDSDVSVSNALLSLYADA 405 (934)
Q Consensus 327 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~ 405 (934)
.+...+.+.|++++|.++|+++.+. .|+ ...+..+...+...|+.+.|...+..+.+.... +......++..|.+.
T Consensus 368 ~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~ 444 (899)
T TIGR02917 368 LLGEAYLALGDFEKAAEYLAKATEL--DPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRS 444 (899)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhc
Confidence 9999999999999999999999874 343 445666667778899999999999998876532 344566788899999
Q ss_pred CChHHHHHHHhhCCC---CCccchHHHHHHHHhCCccHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhccCCchHHHHHH
Q 046194 406 GYLSRCLKVFFLMPE---HDQVSWNSVIGAFADSEALVSEAVKYYLDMRRAGWSPNGVTFINILAAASSFSMGKLGHQVH 482 (934)
Q Consensus 406 g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~ 482 (934)
|++++|..+++.+.. .+..+|+.+...+...|++ ++|.+.|+++.+.. +.+...+..+...+...|+++.|.+.+
T Consensus 445 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~ 522 (899)
T TIGR02917 445 GQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDL-AKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRF 522 (899)
T ss_pred CCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCH-HHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999998864 3667899999999999999 99999999998753 233456677888889999999999999
Q ss_pred HHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccC-C-CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 046194 483 AQVIKYNVANETTIENALLSCYGKCGEMDDCEKIFARMSER-R-DEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLD 560 (934)
Q Consensus 483 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 560 (934)
..+.+.. +.+...+..+...|.+.|+.++|...|+++... | +...+..++..|...|++++|+.+++++... .+.+
T Consensus 523 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~ 600 (899)
T TIGR02917 523 EKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADA-APDS 600 (899)
T ss_pred HHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCC
Confidence 9998765 346678889999999999999999999998664 3 5667888999999999999999999999875 3556
Q ss_pred HhHHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCC---CCcccccHHHHHH
Q 046194 561 HFTFATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPV---RNVYSWNSMISGY 637 (934)
Q Consensus 561 ~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 637 (934)
..++..+..++...|++++|...+..+.+.. +.+...+..+...|.+.|++++|..+|+.+.. .+..+|..++..+
T Consensus 601 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 679 (899)
T TIGR02917 601 PEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLL 679 (899)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 7889999999999999999999999998754 33677888999999999999999999998763 3567899999999
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHH
Q 046194 638 ARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKI 717 (934)
Q Consensus 638 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A 717 (934)
...|++++|+.+++.+.+.+ +++...+..+...+...|++++|.+.|+.+.. ..|+...+..++.++.+.|++++|
T Consensus 680 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A 755 (899)
T TIGR02917 680 LAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALK---RAPSSQNAIKLHRALLASGNTAEA 755 (899)
T ss_pred HHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHCCCHHHH
Confidence 99999999999999999875 44567788888889999999999999999976 457778888999999999999999
Q ss_pred HHHHHhC-C-CCCCHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 046194 718 EEFINKM-P-ITPNSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMKEA 795 (934)
Q Consensus 718 ~~~~~~m-~-~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~ 795 (934)
.+.++++ . .+.+...+..+...+... |+.+.|...++++++..|+++..+..++++|...|+ .+|.+.++++.+.
T Consensus 756 ~~~~~~~l~~~~~~~~~~~~la~~~~~~--g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~ 832 (899)
T TIGR02917 756 VKTLEAWLKTHPNDAVLRTALAELYLAQ--KDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKL 832 (899)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHC--cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh
Confidence 9999988 3 344677888888888888 999999999999999999999999999999999999 8899998888764
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PF14432 DYW_deaminase: DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-32 Score=237.30 Aligned_cols=105 Identities=63% Similarity=1.120 Sum_probs=96.7
Q ss_pred ceeEEEeCCEEEEEEcCCCCCCChHHHHHHHHHHHHHHHHCCcccCCCcccccCCchhh--------hhhhhcccHHHHH
Q 046194 802 GCSWVTMKDGVHVFVAGDESHPEKDLIYEKLKELNQKMRDAGYVPQTKFALFDLEPESK--------EDLVSYHSEKIAV 873 (934)
Q Consensus 802 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~ 873 (934)
||||+++ |.|.+||.+||+. ++..++...||.|++..+.++++++++ +..+++||||||+
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAi 69 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAI 69 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHH
Confidence 7899987 9999999999998 566777888999999999888877655 6689999999999
Q ss_pred HHHhc-CCCCCcEEEEccc-cccCchhhHHHhHhhhhCcEEEEecCCcccccC
Q 046194 874 AFVLT-RNSKLPIRIMKNL-RVCGDCHSAFKFISKIVGREIVLRDSNRFHHFN 924 (934)
Q Consensus 874 ~~~~~-~~~~~~~~~~~n~-~~~~~ch~~~~~~s~~~~~~~~~~d~~~~h~f~ 924 (934)
||||+ + +|+||+ |||+|||+|+|+||+++||+|||||++||||||
T Consensus 70 afgli~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 70 AFGLINT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred Hhcccce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 99999 6 899999 999999999999999999999999999999997
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2e-21 Score=242.45 Aligned_cols=610 Identities=11% Similarity=0.040 Sum_probs=431.0
Q ss_pred HHhhhCCCChHHHHHHhhccCC--C-CcccHHHHHHHHHcCCCchHHHHHHHHHHHccCCCCCCCCceeHHH--------
Q 046194 131 AMYGSCLESTDCARRIFEEIET--R-DLISWNSIISVYSQRGDTISVFKLFSRMQREGFRYSLKPNEYTFGS-------- 199 (934)
Q Consensus 131 ~~y~~~~g~~~~a~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~p~~~t~~~-------- 199 (934)
..+-.. ++.+.|++.++++.. | |...+..+...+.+.|+.++|.+.+++..+. .|+...+..
T Consensus 36 ~~~~~~-~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~------~P~~~~~~~~~~~~~~~ 108 (1157)
T PRK11447 36 RLGEAT-HREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQL------APDSNAYRSSRTTMLLS 108 (1157)
T ss_pred HHHHhh-CChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh------CCCChHHHHHHHHHHhc
Confidence 344444 899999999987753 3 5566888899999999999999999999886 454433321
Q ss_pred ---------HHHHHhcCccccchHHHHHHHHHHHhCCCCCccchhHHHHHHHhcCChHHHHHHHHHhhhcccchhhhhhh
Q 046194 200 ---------LITAAYSSVLSGSYLLQQILAMVKKAGLLSDLYVGSALVSGFARLGNFYYARKIFEQMIQKNVVSMNGLME 270 (934)
Q Consensus 200 ---------ll~a~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~l~ 270 (934)
..+.+...|+.+. |.+.++...+............+.......|+.++|++.|+++.+.+
T Consensus 109 ~~~~~~~l~~A~ll~~~g~~~e--A~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~--------- 177 (1157)
T PRK11447 109 TPEGRQALQQARLLATTGRTEE--ALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY--------- 177 (1157)
T ss_pred CCchhhHHHHHHHHHhCCCHHH--HHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC---------
Confidence 1223445555555 66666665543221111001011111123466666666666665433
Q ss_pred hhhhhhHHHHHHHHHcCCCchhHHHHHHHHhhccCChhHHHHHHhcCCCCCc------ccH-----------------HH
Q 046194 271 GRRKGKEVHGYLIRSGLFDMVAVGNGLVNMYAKCGTIDDSRSVFRFMIGKDS------VSW-----------------NT 327 (934)
Q Consensus 271 ~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~------~~~-----------------~~ 327 (934)
+.+......+...+...|+.++|+..|+++..... ..| ..
T Consensus 178 -----------------P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~ 240 (1157)
T PRK11447 178 -----------------PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQK 240 (1157)
T ss_pred -----------------CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHH
Confidence 23455667788889999999999999998744221 111 11
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCchHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhcCC
Q 046194 328 MISGLDQNGCYEEAIMNFCAMRRDGLMSSNFSLISTLSSCASLGWIMLGQQIHGEGLKLGLDSDVSVSNALLSLYADAGY 407 (934)
Q Consensus 328 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~ 407 (934)
.+..+-.......|...+..+....-.|+... ...-.++...|+++.|...++.+++.. +.+..++..|...|.+.|+
T Consensus 241 ~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~-~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~ 318 (1157)
T PRK11447 241 YLQVFSDGDSVAAARSQLAEQQKQLADPAFRA-RAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGD 318 (1157)
T ss_pred HHHHCCCchHHHHHHHHHHHHHHhccCcchHH-HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 11111222234455555555544322333221 122344567899999999999998864 3467788899999999999
Q ss_pred hHHHHHHHhhCCC--CCc---cchHHH------------HHHHHhCCccHHHHHHHHHHHHHcCCCCCcccHHHHHHHHh
Q 046194 408 LSRCLKVFFLMPE--HDQ---VSWNSV------------IGAFADSEALVSEAVKYYLDMRRAGWSPNGVTFINILAAAS 470 (934)
Q Consensus 408 ~~~A~~~f~~~~~--~~~---~~~~~l------------i~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 470 (934)
+++|...|++..+ |+. ..|..+ ...+.+.|++ ++|+..|++..+.. +.+...+..+...+.
T Consensus 319 ~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~-~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~ 396 (1157)
T PRK11447 319 RARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNL-AQAERLYQQARQVD-NTDSYAVLGLGDVAM 396 (1157)
T ss_pred HHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 9999999988764 221 123222 3356788999 99999999998763 233455667778899
Q ss_pred ccCCchHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccC-C----------CcchHHHHHHHHHhc
Q 046194 471 SFSMGKLGHQVHAQVIKYNVANETTIENALLSCYGKCGEMDDCEKIFARMSER-R----------DEVSWNSMISGYIHN 539 (934)
Q Consensus 471 ~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-p----------~~~~~~~li~~~~~~ 539 (934)
..|++++|.+.++.+++... .+...+..+...|. .++.++|...++.+... + ....+..+...+...
T Consensus 397 ~~g~~~eA~~~y~~aL~~~p-~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~ 474 (1157)
T PRK11447 397 ARKDYAAAERYYQQALRMDP-GNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQ 474 (1157)
T ss_pred HCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHC
Confidence 99999999999999987653 33455666777775 46789999999877543 1 122355567778899
Q ss_pred CChhHHHHHHHHHHHcCCCCC-HhHHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHH
Q 046194 540 ELLPKAMNLVWFMMQRGQRLD-HFTFATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRF 618 (934)
Q Consensus 540 g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~ 618 (934)
|++++|++.|++.+.. .|+ ...+..+...+.+.|++++|...++.+++... .+...+..+...+.+.|+.++|...
T Consensus 475 g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P-~~~~~~~a~al~l~~~~~~~~Al~~ 551 (1157)
T PRK11447 475 GKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKP-NDPEQVYAYGLYLSGSDRDRAALAH 551 (1157)
T ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 9999999999999875 454 45667788889999999999999999887432 2445555555667889999999999
Q ss_pred hccCCCCC----cc---------cccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHHHHHH
Q 046194 619 FDLMPVRN----VY---------SWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGFKHF 685 (934)
Q Consensus 619 ~~~~~~~~----~~---------~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 685 (934)
++.+.... .. .+..+...+...|+.++|+++++. .+++...+..+...+.+.|+.++|+..|
T Consensus 552 l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y 626 (1157)
T PRK11447 552 LNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAY 626 (1157)
T ss_pred HHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHH
Confidence 99886321 11 122456678899999999999882 2344556677788899999999999999
Q ss_pred HHhHHhhCCCCC-cccHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcC
Q 046194 686 KSMSQVYGLIPQ-LEQFSCMVDLLGRAGELDKIEEFINKM-PITPN-SLIWRTVLGACCRANCRKTELGRKAANMLFEME 762 (934)
Q Consensus 686 ~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~ 762 (934)
+...+ ..|+ ...+..++.+|...|++++|++.++.. ...|+ ..++..+..++... |+.++|...++++++..
T Consensus 627 ~~al~---~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~--g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 627 QRVLT---REPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAAL--GDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred HHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhC--CCHHHHHHHHHHHhhhC
Confidence 99987 3455 788899999999999999999999987 45554 55677777778777 99999999999999988
Q ss_pred CCCCc------hHHHHHHHHHcCCChHHHHHHHHHHHh
Q 046194 763 PQNAV------NYVLLANMYASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 763 p~~~~------~y~~l~~~~~~~g~~~~a~~~~~~m~~ 794 (934)
|+++. .+..++.++...|++++|.+.++....
T Consensus 702 ~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 702 KSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred ccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 76654 566789999999999999999887653
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-20 Score=223.41 Aligned_cols=625 Identities=11% Similarity=0.017 Sum_probs=425.1
Q ss_pred CChhhhhHHHHHHHHhcCCCCchhhHHHHHHhhhCCCChHHHHHHhhccCCCCc--ccHHHHHHHHHcCCCchHHHHHHH
Q 046194 102 SGFKFGMQVHCLVLKSNQTFDGLVSNVLIAMYGSCLESTDCARRIFEEIETRDL--ISWNSIISVYSQRGDTISVFKLFS 179 (934)
Q Consensus 102 ~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~~g~~~~a~~~f~~~~~~~~--~~~~~li~~~~~~g~~~~A~~l~~ 179 (934)
|+...|...+..+++..+.. ..++..|...|.+. |+.+.|+..+++..+.|. .-|..++..+ ++.++|..+|+
T Consensus 58 Gd~~~A~~~l~~Al~~dP~n-~~~~~~LA~~yl~~-g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~ye 132 (987)
T PRK09782 58 NDEATAIREFEYIHQQVPDN-IPLTLYLAEAYRHF-GHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTTVE 132 (987)
T ss_pred CCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHC-CCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHHHH
Confidence 44444444444444444333 56667788888888 999999999988875332 3344434333 88999999999
Q ss_pred HHHHccCCCCCCCCce-eHHHHHHH--------HhcCccccchHHHHHHHHHHHhCCCCCccchhHH-HHHHHhcCChHH
Q 046194 180 RMQREGFRYSLKPNEY-TFGSLITA--------AYSSVLSGSYLLQQILAMVKKAGLLSDLYVGSAL-VSGFARLGNFYY 249 (934)
Q Consensus 180 ~m~~~g~~~~~~p~~~-t~~~ll~a--------~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~l-i~~~~~~g~~~~ 249 (934)
++... .|+.. .+..+... +.+. +. +.+.++ .......|+..+...+ ...|.+.|++++
T Consensus 133 ~l~~~------~P~n~~~~~~la~~~~~~~~l~y~q~---eq--Al~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~ 200 (987)
T PRK09782 133 ELLAQ------QKACDAVPTLRCRSEVGQNALRLAQL---PV--ARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQ 200 (987)
T ss_pred HHHHh------CCCChhHHHHHHHHhhccchhhhhhH---HH--HHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHH
Confidence 99887 45433 33333332 2222 33 677776 4445555556666666 999999999999
Q ss_pred HHHHHHHhhhcccchhhhhhhhhhhhhHHHHHHHHHcCCCchhHHHHHHHHhhc-cCChhHHHHHHhcCCCCCcccHHHH
Q 046194 250 ARKIFEQMIQKNVVSMNGLMEGRRKGKEVHGYLIRSGLFDMVAVGNGLVNMYAK-CGTIDDSRSVFRFMIGKDSVSWNTM 328 (934)
Q Consensus 250 A~~l~~~m~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~f~~~~~~~~~~~~~l 328 (934)
|+.+++++.+.++.+ ......|-..|.. .++ ++|..+++...+.|...+..+
T Consensus 201 Ai~lL~~L~k~~pl~--------------------------~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~al 253 (987)
T PRK09782 201 ADTLYNEARQQNTLS--------------------------AAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITY 253 (987)
T ss_pred HHHHHHHHHhcCCCC--------------------------HHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHH
Confidence 999999998764332 2222344456666 355 888888776555688889999
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCC-CChhhHHHHHHHhhccCchHHHHHHHHHHhhhCCCCc-hhHHHHHHHHHHhcC
Q 046194 329 ISGLDQNGCYEEAIMNFCAMRRDGLM-SSNFSLISTLSSCASLGWIMLGQQIHGEGLKLGLDSD-VSVSNALLSLYADAG 406 (934)
Q Consensus 329 i~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~-~~~~~~li~~y~~~g 406 (934)
...|.+.|+.++|..+++++...-.. |...++.-.+.-..... ..+..-+. + .+.++ ....-.+++.+.+.+
T Consensus 254 a~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~--~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~ 327 (987)
T PRK09782 254 ATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANP--VQALANYT---V-QFADNRQYVVGATLPVLLKEG 327 (987)
T ss_pred HHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCch--hhhccchh---h-hhHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999998765433 66666655544333221 11111110 0 01111 123344578888999
Q ss_pred ChHHHHHHHhhCCCCCccchHHHHH-HH-HhCCccHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhccCCchHHHHHHHH
Q 046194 407 YLSRCLKVFFLMPEHDQVSWNSVIG-AF-ADSEALVSEAVKYYLDMRRAGWSPNGVTFINILAAASSFSMGKLGHQVHAQ 484 (934)
Q Consensus 407 ~~~~A~~~f~~~~~~~~~~~~~li~-~~-~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~ 484 (934)
+++.+.++.. ....+. . ..+. ++ ...+.. .++...++.|.+.. +-+......+---....|+.++|.+++..
T Consensus 328 ~~~~~~~~~~-~~~~~~-~--~~~r~~~~~~~~~~-~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~ 401 (987)
T PRK09782 328 QYDAAQKLLA-TLPANE-M--LEERYAVSVATRNK-AEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQ 401 (987)
T ss_pred HHHHHHHHhc-CCCcch-H--HHHHHhhccccCch-hHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 9998887744 222222 1 2222 22 233555 67777777776541 11222222222334567888888888888
Q ss_pred HHHh-c-CCCchhHHHHHHHHHHhcCC---HHHHHHH-------------------------HHhhccC-C---CcchHH
Q 046194 485 VIKY-N-VANETTIENALLSCYGKCGE---MDDCEKI-------------------------FARMSER-R---DEVSWN 530 (934)
Q Consensus 485 ~~~~-g-~~~~~~~~~~li~~~~~~g~---~~~A~~~-------------------------~~~~~~~-p---~~~~~~ 530 (934)
.... + -..+....+-|+..|.+.+. ..++..+ +...... | +...|.
T Consensus 402 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~ 481 (987)
T PRK09782 402 RYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWN 481 (987)
T ss_pred hcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHH
Confidence 7652 1 22345556677888887766 2333222 1111111 2 445677
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcC
Q 046194 531 SMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCG 610 (934)
Q Consensus 531 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g 610 (934)
.+..++.. +++++|+..|.+.... .|+......+..++...|++++|...+..+... +|+...+..+...+.+.|
T Consensus 482 ~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~G 556 (987)
T PRK09782 482 RLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAG 556 (987)
T ss_pred HHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCC
Confidence 77777766 8899999988887764 466655444555557899999999999987654 344444566778889999
Q ss_pred CHHHHHHHhccCCCCCcccccHHHH---HHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHHHHHHHH
Q 046194 611 RIDYASRFFDLMPVRNVYSWNSMIS---GYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGFKHFKS 687 (934)
Q Consensus 611 ~~~~A~~~~~~~~~~~~~~~~~li~---~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 687 (934)
+.++|...|+...+.+...++.... .....|++++|+..|++..+ ..|+...+..+..++.+.|++++|...|++
T Consensus 557 d~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~ 634 (987)
T PRK09782 557 NGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRA 634 (987)
T ss_pred CHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999998877544333333332 33345999999999999998 467877888888999999999999999999
Q ss_pred hHHhhCCCCC-cccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCC
Q 046194 688 MSQVYGLIPQ-LEQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQ 764 (934)
Q Consensus 688 m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~ 764 (934)
..+ +.|+ ...+..+..++...|++++|++.+++. ...| +...+..+..++... |+.+.|+..++++++++|+
T Consensus 635 AL~---l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~l--Gd~~eA~~~l~~Al~l~P~ 709 (987)
T PRK09782 635 ALE---LEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRL--DDMAATQHYARLVIDDIDN 709 (987)
T ss_pred HHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHhcCCC
Confidence 977 4566 778888999999999999999999987 5566 467889999999999 9999999999999999999
Q ss_pred CCchHHHHHHHHHcCCChHHHHHHHHHHHh
Q 046194 765 NAVNYVLLANMYASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 765 ~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 794 (934)
+..+....+++..+..+++.|.+-++..-.
T Consensus 710 ~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~ 739 (987)
T PRK09782 710 QALITPLTPEQNQQRFNFRRLHEEVGRRWT 739 (987)
T ss_pred CchhhhhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999886655443
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.7e-21 Score=237.17 Aligned_cols=590 Identities=10% Similarity=0.008 Sum_probs=429.9
Q ss_pred HHHHHHcCCCchHHHHHHHHHHHccCCCCCCCCceeHHHHHHHHhcCccccchHHHHHHHHHHHhCCCCCcc--------
Q 046194 161 IISVYSQRGDTISVFKLFSRMQREGFRYSLKPNEYTFGSLITAAYSSVLSGSYLLQQILAMVKKAGLLSDLY-------- 232 (934)
Q Consensus 161 li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~p~~~t~~~ll~a~~~~~~~~~~~a~~i~~~~~~~g~~~~~~-------- 232 (934)
.+.-+...++.+.|.+.++++.... +-|...+..+...+...|+.+. |.+.++...+........
T Consensus 34 q~~~~~~~~~~d~a~~~l~kl~~~~-----p~~p~~~~~~~~~~l~~g~~~~--A~~~l~~l~~~~P~~~~~~~~~~~~~ 106 (1157)
T PRK11447 34 QVRLGEATHREDLVRQSLYRLELID-----PNNPDVIAARFRLLLRQGDSDG--AQKLLDRLSQLAPDSNAYRSSRTTML 106 (1157)
T ss_pred HHHHHHhhCChHHHHHHHHHHHccC-----CCCHHHHHHHHHHHHhCCCHHH--HHHHHHHHHhhCCCChHHHHHHHHHH
Confidence 4455667899999999999987763 3466677778888889999888 999999998876322111
Q ss_pred -------chhHHHHHHHhcCChHHHHHHHHHhhhcccchhhhhhhhhhhhhHHHHHHHHHcCCCchhHHHHH-HHHhhcc
Q 046194 233 -------VGSALVSGFARLGNFYYARKIFEQMIQKNVVSMNGLMEGRRKGKEVHGYLIRSGLFDMVAVGNGL-VNMYAKC 304 (934)
Q Consensus 233 -------~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~l-i~~~~~~ 304 (934)
....+...+.+.|++++|.+.|+.+.+.++. +....... .......
T Consensus 107 ~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~--------------------------~~~la~~y~~~~~~~~ 160 (1157)
T PRK11447 107 LSTPEGRQALQQARLLATTGRTEEALASYDKLFNGAPP--------------------------ELDLAVEYWRLVAKLP 160 (1157)
T ss_pred hcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCC--------------------------ChHHHHHHHHHHhhCC
Confidence 1234455788999999999999998764321 11111111 1122345
Q ss_pred CChhHHHHHHhcCCCC---CcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCC----------------CChh---hHHH
Q 046194 305 GTIDDSRSVFRFMIGK---DSVSWNTMISGLDQNGCYEEAIMNFCAMRRDGLM----------------SSNF---SLIS 362 (934)
Q Consensus 305 g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----------------p~~~---t~~~ 362 (934)
|+.++|++.|+++.+. +...+..+...+...|++++|+..|+++...... ++.. .+..
T Consensus 161 g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~ 240 (1157)
T PRK11447 161 AQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQK 240 (1157)
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHH
Confidence 8999999999998653 5567888999999999999999999998663210 0000 1111
Q ss_pred HHHHhhccCchHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC---CCccchHHHHHHHHhCCcc
Q 046194 363 TLSSCASLGWIMLGQQIHGEGLKLGLDSDVSVSNALLSLYADAGYLSRCLKVFFLMPE---HDQVSWNSVIGAFADSEAL 439 (934)
Q Consensus 363 ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~ 439 (934)
.+..+........+...+....+....|+.. ...+...+...|++++|...|++... .+...+..+...|.+.|++
T Consensus 241 ~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~-~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~ 319 (1157)
T PRK11447 241 YLQVFSDGDSVAAARSQLAEQQKQLADPAFR-ARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDR 319 (1157)
T ss_pred HHHHCCCchHHHHHHHHHHHHHHhccCcchH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 1222222223344445554443332233322 22345677889999999999998754 3667889999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCc-ccHH------------HHHHHHhccCCchHHHHHHHHHHHhcCCCchhHHHHHHHHHHh
Q 046194 440 VSEAVKYYLDMRRAGWSPNG-VTFI------------NILAAASSFSMGKLGHQVHAQVIKYNVANETTIENALLSCYGK 506 (934)
Q Consensus 440 ~~~A~~l~~~m~~~g~~p~~-~t~~------------~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~ 506 (934)
++|+..|++..+....... ..+. .....+...|++++|...+..+++... .+...+..+...|..
T Consensus 320 -~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~ 397 (1157)
T PRK11447 320 -ARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMA 397 (1157)
T ss_pred -HHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHH
Confidence 9999999998875432211 1111 123456788999999999999988753 455677788999999
Q ss_pred cCCHHHHHHHHHhhccC-C-CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCC--------CCHhHHHHHHHHHhchhh
Q 046194 507 CGEMDDCEKIFARMSER-R-DEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQR--------LDHFTFATVLSACASVAT 576 (934)
Q Consensus 507 ~g~~~~A~~~~~~~~~~-p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--------p~~~t~~~ll~a~~~~~~ 576 (934)
.|++++|++.|++.... | +...+..+...|. .++.++|+.+++.+...... .....+......+...|+
T Consensus 398 ~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~ 476 (1157)
T PRK11447 398 RKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGK 476 (1157)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCC
Confidence 99999999999998764 4 4556667777774 46789999988765432100 011234445566778999
Q ss_pred HHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCC--C-CcccccHHHHHHHHcCChHHHHHHHHHH
Q 046194 577 LERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPV--R-NVYSWNSMISGYARHGHGDKALTLFSQM 653 (934)
Q Consensus 577 ~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m 653 (934)
+++|.+.++.+++.... +...+..+...|.+.|++++|...|+.+.. | +...+..+...+...|+.++|+..++++
T Consensus 477 ~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l 555 (1157)
T PRK11447 477 WAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTL 555 (1157)
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 99999999999885432 567778899999999999999999998753 3 3445555556677899999999999987
Q ss_pred HHCCCCCChh---------hHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhC
Q 046194 654 KLDGPLPDHV---------TFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKM 724 (934)
Q Consensus 654 ~~~g~~p~~~---------t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m 724 (934)
......++.. .+..+...+...|+.++|.++++. .+++...+..+.+.+.+.|++++|++.+++.
T Consensus 556 ~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~a 629 (1157)
T PRK11447 556 PRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRV 629 (1157)
T ss_pred CchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5433222221 133456678899999999998872 2344667788999999999999999999988
Q ss_pred -CCCC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHHhCC
Q 046194 725 -PITP-NSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMKEAE 796 (934)
Q Consensus 725 -~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~ 796 (934)
...| +...+..+...+... |+.++|+..++++.+..|+++..+..++.++...|++++|.++++.+.+..
T Consensus 630 l~~~P~~~~a~~~la~~~~~~--g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 630 LTREPGNADARLGLIEVDIAQ--GDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred HHhCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 5555 477889999999999 999999999999999999999999999999999999999999999887643
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.8e-18 Score=203.81 Aligned_cols=668 Identities=10% Similarity=0.011 Sum_probs=364.1
Q ss_pred hhcCChhhHHHhhccCCC--C-ChhhHHHHHHHHhcCCChhhHHHHHHHHHHcCCCCCcccHHHHHHHhhhcCCCChhhh
Q 046194 31 VRVGDLASASKLFDEMPD--R-NSVSWACIVSGYTHKGMSNEACKMFKEMVRAGFLLNRYALGSVLRACQECGPSGFKFG 107 (934)
Q Consensus 31 ~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~ 107 (934)
...|++++|...|....+ | +...+..|...|.+.|+.++|+..+++..+. .|+...|..++..+ +....+
T Consensus 55 ~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~La~i-----~~~~kA 127 (987)
T PRK09782 55 QKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERSLAAI-----PVEVKS 127 (987)
T ss_pred HhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHh-----ccChhH
Confidence 334999999999988753 3 5667889999999999999999999988774 46655555555333 566677
Q ss_pred hHHHHHHHHhcCCCCchhhHHHHHH--------hhhCCCChHHHHHHhhccCCCC--cccHH-HHHHHHHcCCCchHHHH
Q 046194 108 MQVHCLVLKSNQTFDGLVSNVLIAM--------YGSCLESTDCARRIFEEIETRD--LISWN-SIISVYSQRGDTISVFK 176 (934)
Q Consensus 108 ~~~~~~~~~~g~~~~~~~~~~li~~--------y~~~~g~~~~a~~~f~~~~~~~--~~~~~-~li~~~~~~g~~~~A~~ 176 (934)
..++..+++.... +..++..+... |.+. +....+.+ .....|+ ..... .....|.+.|++++|++
T Consensus 128 ~~~ye~l~~~~P~-n~~~~~~la~~~~~~~~l~y~q~-eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~ 203 (987)
T PRK09782 128 VTTVEELLAQQKA-CDAVPTLRCRSEVGQNALRLAQL-PVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADT 203 (987)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHhhccchhhhhhH-HHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHH
Confidence 7888888876532 23344444443 7776 66666666 3333343 43334 44889999999999999
Q ss_pred HHHHHHHccCCCCCCCCceeHHHHHHHHhc-CccccchHHHHHHHHHHHhCCCCCccchhHHHHHHHhcCChHHHHHHHH
Q 046194 177 LFSRMQREGFRYSLKPNEYTFGSLITAAYS-SVLSGSYLLQQILAMVKKAGLLSDLYVGSALVSGFARLGNFYYARKIFE 255 (934)
Q Consensus 177 l~~~m~~~g~~~~~~p~~~t~~~ll~a~~~-~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 255 (934)
++.++.+.+. .+..-...+-.++.. .++ +. +..++. ..+.-+...+..+...|.+.|+.++|.++++
T Consensus 204 lL~~L~k~~p-----l~~~~~~~L~~ay~q~l~~-~~--a~al~~----~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~ 271 (987)
T PRK09782 204 LYNEARQQNT-----LSAAERRQWFDVLLAGQLD-DR--LLALQS----QGIFTDPQSRITYATALAYRGEKARLQHYLI 271 (987)
T ss_pred HHHHHHhcCC-----CCHHHHHHHHHHHHHhhCH-HH--HHHHhc----hhcccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999863 333334455555555 344 22 555533 2444678889999999999999999999999
Q ss_pred Hhhhc-----ccchhhhhhhhhhhhhHHH-HHHHHHcCCCc-hhHHHHHHHHhhccCChhHHHHHHhcCCCCCcccHHHH
Q 046194 256 QMIQK-----NVVSMNGLMEGRRKGKEVH-GYLIRSGLFDM-VAVGNGLVNMYAKCGTIDDSRSVFRFMIGKDSVSWNTM 328 (934)
Q Consensus 256 ~m~~~-----~~~~~~~~l~~~~~~~~~~-~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~l 328 (934)
+++.. +..+|--.+.........- ....+ .+.++ ....-.++..+.+.++.+.|.++.+ ....+.. ..
T Consensus 272 ~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~ 346 (987)
T PRK09782 272 ENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTV-QFADNRQYVVGATLPVLLKEGQYDAAQKLLA-TLPANEM---LE 346 (987)
T ss_pred hCcccccCCCccHHHHHHHHhccCchhhhccchhh-hhHHHHHHHHHHHHHHHHhccHHHHHHHHhc-CCCcchH---HH
Confidence 98643 2234433331111110000 00001 11111 1122334777888888887777744 2222321 22
Q ss_pred HHHH--HhCCChhHHHHHHHHHHHCCCCC-ChhhHHHHHHHhhccCchHHHHHHHHHHhhh-C-CCCchhHHHHHHHHHH
Q 046194 329 ISGL--DQNGCYEEAIMNFCAMRRDGLMS-SNFSLISTLSSCASLGWIMLGQQIHGEGLKL-G-LDSDVSVSNALLSLYA 403 (934)
Q Consensus 329 i~~~--~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~-g-~~~~~~~~~~li~~y~ 403 (934)
+... ...+...++...+..|.+. .| +......+---....|+.++|.+++...... + -..+..+.+.|+..|.
T Consensus 347 ~r~~~~~~~~~~~~~~~~~~~~y~~--~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 424 (987)
T PRK09782 347 ERYAVSVATRNKAEALRLARLLYQQ--EPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLE 424 (987)
T ss_pred HHHhhccccCchhHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHH
Confidence 2222 2345666666666667653 12 2222222222234567777777777777652 1 2234556667777777
Q ss_pred hcCChHHHHHHHhh---CCCCCccchHHHHHHHHhCCccHHHHHHHHHHHHHc-CCCCCcccHHHHHHHHhccCCchHHH
Q 046194 404 DAGYLSRCLKVFFL---MPEHDQVSWNSVIGAFADSEALVSEAVKYYLDMRRA-GWSPNGVTFINILAAASSFSMGKLGH 479 (934)
Q Consensus 404 ~~g~~~~A~~~f~~---~~~~~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~-g~~p~~~t~~~ll~a~~~~~~~~~a~ 479 (934)
+.+......++..- +..+....| .|+. .++...+...... +..|+.
T Consensus 425 ~~~~~~~~~~~~~l~~~~~~~~~~~~---------~~~~-~~~~~~~~~~~~al~~~p~~-------------------- 474 (987)
T PRK09782 425 SHPYLATPAKVAILSKPLPLAEQRQW---------QSQL-PGIADNCPAIVRLLGDMSPS-------------------- 474 (987)
T ss_pred hCCcccchHHHHHhccccccchhHHH---------Hhhh-hhhhhhHHHHHHhcccCCCC--------------------
Confidence 77764333333222 222221111 1111 2222222222111 111220
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccC-CCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 046194 480 QVHAQVIKYNVANETTIENALLSCYGKCGEMDDCEKIFARMSER-RDEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQR 558 (934)
Q Consensus 480 ~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 558 (934)
-+...+..+..++.. ++.++|...|.+.... |+......+...+...|++++|...|+++... .
T Consensus 475 ------------~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~ 539 (987)
T PRK09782 475 ------------YDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--D 539 (987)
T ss_pred ------------CCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--C
Confidence 022333344444443 4555555544443332 33221111222223455555555555554332 2
Q ss_pred CCHhHHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCC--CCCcccccHHHHH
Q 046194 559 LDHFTFATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMP--VRNVYSWNSMISG 636 (934)
Q Consensus 559 p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~ 636 (934)
|+...+..+..++.+.|+.+.|.+.+..+++... .+...+..+.......|++++|...|++.. .|+...|..+...
T Consensus 540 p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P-~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~ 618 (987)
T PRK09782 540 MSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGL-GDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPSANAYVARATI 618 (987)
T ss_pred CCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 3333333444445555555555555555554321 122222222223334466666666666554 3455566666666
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhhcCCh
Q 046194 637 YARHGHGDKALTLFSQMKLDGPLPD-HVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGRAGEL 714 (934)
Q Consensus 637 ~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~ 714 (934)
+.+.|++++|+..|++..+ ..|+ ...+..+..++...|+.++|+..|+...+ +.|+ ...+..+..++.+.|++
T Consensus 619 l~~lG~~deA~~~l~~AL~--l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~---l~P~~~~a~~nLA~al~~lGd~ 693 (987)
T PRK09782 619 YRQRHNVPAAVSDLRAALE--LEPNNSNYQAALGYALWDSGDIAQSREMLERAHK---GLPDDPALIRQLAYVNQRLDDM 693 (987)
T ss_pred HHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCH
Confidence 6666777777777776666 3455 33444455566666777777776666655 3344 55666666677777777
Q ss_pred HHHHHHHHhC-CCCCCH-HHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCCh
Q 046194 715 DKIEEFINKM-PITPNS-LIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKW 782 (934)
Q Consensus 715 ~~A~~~~~~m-~~~p~~-~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~ 782 (934)
++|++.+++. ...|+. .+-.......... .+++.+.+.+++...++|... +....+.++...++.
T Consensus 694 ~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~--~~~~~a~~~~~r~~~~~~~~~-a~~~~g~~~~~~~~~ 760 (987)
T PRK09782 694 AATQHYARLVIDDIDNQALITPLTPEQNQQR--FNFRRLHEEVGRRWTFSFDSS-IGLRSGAMSTANNNV 760 (987)
T ss_pred HHHHHHHHHHHhcCCCCchhhhhhhHHHHHH--HHHHHHHHHHHHHhhcCccch-hccccchHhhhcccc
Confidence 7777766665 455543 2333333344444 556666666666666666654 555555555444443
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.6e-18 Score=178.42 Aligned_cols=449 Identities=12% Similarity=0.104 Sum_probs=352.0
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHH-HhhccCchHHHHHHHHHHhhhCCCCchhHHHHHHHHHH
Q 046194 325 WNTMISGLDQNGCYEEAIMNFCAMRRDGLMSSNFSLISTLS-SCASLGWIMLGQQIHGEGLKLGLDSDVSVSNALLSLYA 403 (934)
Q Consensus 325 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~-a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~ 403 (934)
-..|..-..+.|++++|.+.-...-.. .|+..--..+++ .+....+++...+--...++.. +.-..+|..+.+.+-
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~--d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~k 127 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQE--DPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILK 127 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhcc--CCCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHH
Confidence 345556667788888888765544332 222222222222 2333334443333222222221 233567888999999
Q ss_pred hcCChHHHHHHHhhCCC---CCccchHHHHHHHHhCCccHHHHHHHHHHHHHcCCCCCcccHHHHHH-HHhccCCchHHH
Q 046194 404 DAGYLSRCLKVFFLMPE---HDQVSWNSVIGAFADSEALVSEAVKYYLDMRRAGWSPNGVTFINILA-AASSFSMGKLGH 479 (934)
Q Consensus 404 ~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~-a~~~~~~~~~a~ 479 (934)
..|++++|+.+++.+.+ ..+..|..+..++...|+. +.|.+.|.+..+ +.|+.+...+-+. .....|++++|.
T Consensus 128 erg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~-~~a~~~~~~alq--lnP~l~ca~s~lgnLlka~Grl~ea~ 204 (966)
T KOG4626|consen 128 ERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDL-ELAVQCFFEALQ--LNPDLYCARSDLGNLLKAEGRLEEAK 204 (966)
T ss_pred HhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCC-cccHHHHHHHHh--cCcchhhhhcchhHHHHhhcccchhH
Confidence 99999999999998765 3567899999999999999 999999988876 4565554443332 234468889999
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccC-C-CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 046194 480 QVHAQVIKYNVANETTIENALLSCYGKCGEMDDCEKIFARMSER-R-DEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQ 557 (934)
Q Consensus 480 ~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 557 (934)
..+...++... .-...|+.|...+-..|++..|+..|++...- | -...|-.|-..|...+.+++|+.-|.+... .
T Consensus 205 ~cYlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~--l 281 (966)
T KOG4626|consen 205 ACYLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALN--L 281 (966)
T ss_pred HHHHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHh--c
Confidence 88888776543 23456788888999999999999999988764 4 345788899999999999999999988776 4
Q ss_pred CCCH-hHHHHHHHHHhchhhHHHHHHHHHHHHHhCCCC-cHhHHHHHHHHHHhcCCHHHHHHHhccCCC--CC-cccccH
Q 046194 558 RLDH-FTFATVLSACASVATLERGMEVHACGVRACLEF-DVVIGSALVDMYSKCGRIDYASRFFDLMPV--RN-VYSWNS 632 (934)
Q Consensus 558 ~p~~-~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~-~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~-~~~~~~ 632 (934)
.|+. +.+..+...|-..|.++.|...+++.+.. +| -...|+.|..++-..|++.+|.+.+..... |+ ..+.+.
T Consensus 282 rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~N 359 (966)
T KOG4626|consen 282 RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNN 359 (966)
T ss_pred CCcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHH
Confidence 6654 67777777788999999999999998874 44 367899999999999999999999998763 43 448889
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhh
Q 046194 633 MISGYARHGHGDKALTLFSQMKLDGPLPD-HVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGR 710 (934)
Q Consensus 633 li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~ 710 (934)
|...|...|.+++|..+|....+ +.|. ...++.|...|-+.|++++|+..|++..+ +.|+ ...|+.|...|-.
T Consensus 360 Lgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr---I~P~fAda~~NmGnt~ke 434 (966)
T KOG4626|consen 360 LGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR---IKPTFADALSNMGNTYKE 434 (966)
T ss_pred HHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh---cCchHHHHHHhcchHHHH
Confidence 99999999999999999999998 7888 66799999999999999999999999875 8999 8899999999999
Q ss_pred cCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHH
Q 046194 711 AGELDKIEEFINKM-PITPN-SLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKA 788 (934)
Q Consensus 711 ~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~ 788 (934)
.|+.+.|.+.+.+. .+.|. ....+.|...+... |++.+|...++.++++.|+.+..|..+...+---.+|.+-.+.
T Consensus 435 ~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDs--Gni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~d~~ 512 (966)
T KOG4626|consen 435 MGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDS--GNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDYDKR 512 (966)
T ss_pred hhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhcc--CCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccchHHH
Confidence 99999999999887 77886 45788899999999 9999999999999999999999999999998888888885444
Q ss_pred HHH
Q 046194 789 RKA 791 (934)
Q Consensus 789 ~~~ 791 (934)
+++
T Consensus 513 ~~k 515 (966)
T KOG4626|consen 513 MKK 515 (966)
T ss_pred HHH
Confidence 333
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.6e-16 Score=172.03 Aligned_cols=592 Identities=13% Similarity=0.091 Sum_probs=386.5
Q ss_pred chHHHHHHHHHHHccCCCCCCCCceeHHHHHHHHhcC--ccccchHHHHHHHHHHHhCCCCCccchhHHHHHHHhcCChH
Q 046194 171 TISVFKLFSRMQREGFRYSLKPNEYTFGSLITAAYSS--VLSGSYLLQQILAMVKKAGLLSDLYVGSALVSGFARLGNFY 248 (934)
Q Consensus 171 ~~~A~~l~~~m~~~g~~~~~~p~~~t~~~ll~a~~~~--~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 248 (934)
.+.|...|....+.. ++|. ...+.+||... ++... +..+|.........--+...-.+...+.+.|+.+
T Consensus 146 ~~~A~a~F~~Vl~~s-----p~Ni--l~LlGkA~i~ynkkdY~~--al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~ 216 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQS-----PDNI--LALLGKARIAYNKKDYRG--ALKYYKKALRINPACKADVRIGIGHCFWKLGMSE 216 (1018)
T ss_pred HHHHHHHHHHHHhhC-----Ccch--HHHHHHHHHHhccccHHH--HHHHHHHHHhcCcccCCCccchhhhHHHhccchh
Confidence 478888888877763 2332 34456666644 45555 8888888665443322223333446778999999
Q ss_pred HHHHHHHHhhhcccchhhhhh------------hhhhhhhHHHHHHHHHcCCCchhHHHHHHHHhhccCChhHHHHHHhc
Q 046194 249 YARKIFEQMIQKNVVSMNGLM------------EGRRKGKEVHGYLIRSGLFDMVAVGNGLVNMYAKCGTIDDSRSVFRF 316 (934)
Q Consensus 249 ~A~~l~~~m~~~~~~~~~~~l------------~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~ 316 (934)
.|+..|.+..+-|+.+.++++ .....|..+.....+. -..|+++.+.|.+.|.-.|++..+..+...
T Consensus 217 ~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~-n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ 295 (1018)
T KOG2002|consen 217 KALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKE-NNENPVALNHLANHFYFKKDYERVWHLAEH 295 (1018)
T ss_pred hHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhh-cCCCcHHHHHHHHHHhhcccHHHHHHHHHH
Confidence 999999999999987777777 1122222222222221 145788889999999999999999888877
Q ss_pred CCCCC------cccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHH--HHHHHhhccCchHHHHHHHHHHhhhCC
Q 046194 317 MIGKD------SVSWNTMISGLDQNGCYEEAIMNFCAMRRDGLMSSNFSLI--STLSSCASLGWIMLGQQIHGEGLKLGL 388 (934)
Q Consensus 317 ~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~--~ll~a~~~~~~~~~a~~i~~~~~~~g~ 388 (934)
+...+ ..+|-.+.++|-..|++++|...|.+..+ ..||.+++. -+-+.+...|+++.+...|+.+.+..
T Consensus 296 ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k--~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~- 372 (1018)
T KOG2002|consen 296 AIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLK--ADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL- 372 (1018)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHc--cCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-
Confidence 65432 34578888999999999999999987766 456654443 35567778899999999999888763
Q ss_pred CCchhHHHHHHHHHHhcC----ChHHHHHHHhhCCCC---CccchHHHHHHHHhCCccHHHHHHHHHHH----HHcCCCC
Q 046194 389 DSDVSVSNALLSLYADAG----YLSRCLKVFFLMPEH---DQVSWNSVIGAFADSEALVSEAVKYYLDM----RRAGWSP 457 (934)
Q Consensus 389 ~~~~~~~~~li~~y~~~g----~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~~A~~l~~~m----~~~g~~p 457 (934)
+.+..+...|...|...+ ..+.|..+..+...+ |...|-.+...+-+... ..++..|... ...+-.+
T Consensus 373 p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~--~~sL~~~~~A~d~L~~~~~~i 450 (1018)
T KOG2002|consen 373 PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDP--WASLDAYGNALDILESKGKQI 450 (1018)
T ss_pred cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcCh--HHHHHHHHHHHHHHHHcCCCC
Confidence 445567777777787775 566777777776654 45566666666655443 3446666543 3455556
Q ss_pred CcccHHHHHHHHhccCCchHHHHHHHHHHHh---cCCCch------hHHHHHHHHHHhcCCHHHHHHHHHhhccC-CCcc
Q 046194 458 NGVTFINILAAASSFSMGKLGHQVHAQVIKY---NVANET------TIENALLSCYGKCGEMDDCEKIFARMSER-RDEV 527 (934)
Q Consensus 458 ~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~---g~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~~~~~-p~~~ 527 (934)
.....+.+.......|+++.|...+...... -..++. .+--.+...+-..++.+.|.+.+..+... |.-+
T Consensus 451 p~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YI 530 (1018)
T KOG2002|consen 451 PPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYI 530 (1018)
T ss_pred CHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhH
Confidence 7777888888888888988888888776554 112222 22333455566677888888888888775 4433
Q ss_pred h-HHHHHHHHHhcCChhHHHHHHHHHHHc-CCCCCHhHHHHHHHHHhchhhHHHHHHHHHHHHHhC-CCCcHhHHHHHHH
Q 046194 528 S-WNSMISGYIHNELLPKAMNLVWFMMQR-GQRLDHFTFATVLSACASVATLERGMEVHACGVRAC-LEFDVVIGSALVD 604 (934)
Q Consensus 528 ~-~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~-~~~~~~~~~~li~ 604 (934)
. |--+...-...+...+|..++.+.... .-.|+..+| +-..+.....+..|..-+..+.+.- -.+|+++.-+|.+
T Consensus 531 d~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl--~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN 608 (1018)
T KOG2002|consen 531 DAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSL--LGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGN 608 (1018)
T ss_pred HHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHH--HHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhH
Confidence 2 222222222346677888888887653 234444443 3335555666666766555554432 2257777777776
Q ss_pred HHHh------------cCCHHHHHHHhccCCC---CCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHH
Q 046194 605 MYSK------------CGRIDYASRFFDLMPV---RNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVL 669 (934)
Q Consensus 605 ~y~~------------~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 669 (934)
.|.. .+..+.|.++|..+.+ +|...=|-+.-.++..|++.+|..+|.+..+... -+.-+|..+.
T Consensus 609 ~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNla 687 (1018)
T KOG2002|consen 609 VYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLA 687 (1018)
T ss_pred HHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHH
Confidence 5542 2446778888887653 4566777788888888888888888888888642 3445677888
Q ss_pred HHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhC-CCCCCHH--HHHHHHHHHHhccCC
Q 046194 670 SACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKM-PITPNSL--IWRTVLGACCRANCR 746 (934)
Q Consensus 670 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p~~~--~~~~ll~~~~~~~~~ 746 (934)
.+|...|.+..|++.|+...+++.-.-+.....+|..++.++|.+.+|.+..... ...|... .||..+-.
T Consensus 688 h~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~------- 760 (1018)
T KOG2002|consen 688 HCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVL------- 760 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHH-------
Confidence 8888888888888888888887776666888888888888888888888777655 3444322 22222211
Q ss_pred CcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHHhCCCc
Q 046194 747 KTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMKEAEVK 798 (934)
Q Consensus 747 ~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 798 (934)
.+..+.+++.++. .+=.+....+..++|.++|..|...+-+
T Consensus 761 -----kkla~s~lr~~k~------t~eev~~a~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 761 -----KKLAESILRLEKR------TLEEVLEAVKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred -----HHHHHHHHhcccc------cHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 1222333333331 2223344445567777777777765544
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.1e-16 Score=167.42 Aligned_cols=434 Identities=16% Similarity=0.206 Sum_probs=295.9
Q ss_pred hhHHHHHHHhcCChHHHHHHHHHhhhcccchhhhhhhhhhhhhHHHHHHHHHcCCCchhHHHHHHHHhhccCChhHHHHH
Q 046194 234 GSALVSGFARLGNFYYARKIFEQMIQKNVVSMNGLMEGRRKGKEVHGYLIRSGLFDMVAVGNGLVNMYAKCGTIDDSRSV 313 (934)
Q Consensus 234 ~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 313 (934)
...|..-..+.|++++|++.-...-+.|+..-..++ -+-..+..+.+++....-
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~ll--------------------------ll~ai~~q~~r~d~s~a~ 104 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLL--------------------------LLSAIFFQGSRLDKSSAG 104 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCCCccccee--------------------------eehhhhhcccchhhhhhh
Confidence 345556667889999999988877665543222211 000122222222222211
Q ss_pred HhcCCC---CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC-hhhHHHHHHHhhccCchHHHHHHHHHHhhhCCC
Q 046194 314 FRFMIG---KDSVSWNTMISGLDQNGCYEEAIMNFCAMRRDGLMSS-NFSLISTLSSCASLGWIMLGQQIHGEGLKLGLD 389 (934)
Q Consensus 314 f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~ 389 (934)
-....+ .-..+|..+...+-..|++++|+.+|+.|.+ ++|+ ...|..+-.++...|+.+.|.+.+...++. .
T Consensus 105 ~~~a~r~~~q~ae~ysn~aN~~kerg~~~~al~~y~~aie--l~p~fida~inla~al~~~~~~~~a~~~~~~alql--n 180 (966)
T KOG4626|consen 105 SLLAIRKNPQGAEAYSNLANILKERGQLQDALALYRAAIE--LKPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--N 180 (966)
T ss_pred hhhhhhccchHHHHHHHHHHHHHHhchHHHHHHHHHHHHh--cCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--C
Confidence 111111 1233555555666666666666666666655 3332 234555555555555555555555555442 3
Q ss_pred CchhHH-HHHHHHHHhcCChHHHHHHHhhCCC--C-CccchHHHHHHHHhCCccHHHHHHHHHHHHHcCCCCCcccHHHH
Q 046194 390 SDVSVS-NALLSLYADAGYLSRCLKVFFLMPE--H-DQVSWNSVIGAFADSEALVSEAVKYYLDMRRAGWSPNGVTFINI 465 (934)
Q Consensus 390 ~~~~~~-~~li~~y~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~l 465 (934)
|+.... +-+....-..|++.+|...+.+..+ | -.+.|+.|...+-..|+. ..|++.|++.... .|+-
T Consensus 181 P~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei-~~aiq~y~eAvkl--dP~f------ 251 (966)
T KOG4626|consen 181 PDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEI-WLAIQHYEEAVKL--DPNF------ 251 (966)
T ss_pred cchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchH-HHHHHHHHHhhcC--CCcc------
Confidence 433322 2233334445667666666655433 2 345777777777777877 7788777776542 2321
Q ss_pred HHHHhccCCchHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhcc-CC-CcchHHHHHHHHHhcCChh
Q 046194 466 LAAASSFSMGKLGHQVHAQVIKYNVANETTIENALLSCYGKCGEMDDCEKIFARMSE-RR-DEVSWNSMISGYIHNELLP 543 (934)
Q Consensus 466 l~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~p-~~~~~~~li~~~~~~g~~~ 543 (934)
...|-.|-..|...+.++.|...+.+... +| ..+.+..|...|-..|..+
T Consensus 252 ----------------------------~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ld 303 (966)
T KOG4626|consen 252 ----------------------------LDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLD 303 (966)
T ss_pred ----------------------------hHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHH
Confidence 12344566677777777888777766544 35 5667777888888899999
Q ss_pred HHHHHHHHHHHcCCCCC-HhHHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccC
Q 046194 544 KAMNLVWFMMQRGQRLD-HFTFATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLM 622 (934)
Q Consensus 544 ~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~ 622 (934)
-|+..|++.+. +.|+ ...|+.+..|+-..|++.+|.+.+......... .....+.|...|...|.+++|..+|...
T Consensus 304 lAI~~Ykral~--~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~a 380 (966)
T KOG4626|consen 304 LAIDTYKRALE--LQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN-HADAMNNLGNIYREQGKIEEATRLYLKA 380 (966)
T ss_pred HHHHHHHHHHh--cCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 99999988876 4565 478889999999999999999999888875332 4566778999999999999999999877
Q ss_pred CC--CC-cccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC-
Q 046194 623 PV--RN-VYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPD-HVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ- 697 (934)
Q Consensus 623 ~~--~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~- 697 (934)
.. |. ....|.|...|-++|+.++|+..|++... ++|+ ...|+.+...|-..|+++.|.+.+.+... +.|.
T Consensus 381 l~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~---~nPt~ 455 (966)
T KOG4626|consen 381 LEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ---INPTF 455 (966)
T ss_pred HhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh---cCcHH
Confidence 64 33 23788999999999999999999999998 8998 67799999999999999999999998875 7788
Q ss_pred cccHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHh
Q 046194 698 LEQFSCMVDLLGRAGELDKIEEFINKM-PITPN-SLIWRTVLGACCR 742 (934)
Q Consensus 698 ~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~ 742 (934)
.+..+.|...|-..|++.+|++-+++. .++|| +..+..|+.+...
T Consensus 456 AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~ 502 (966)
T KOG4626|consen 456 AEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQI 502 (966)
T ss_pred HHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHH
Confidence 888999999999999999999999987 78887 3456566655443
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.3e-17 Score=181.52 Aligned_cols=295 Identities=11% Similarity=0.042 Sum_probs=173.4
Q ss_pred HhCCChhHHHHHHHHHHHCCCCCCh-hhHHHHHHHhhccCchHHHHHHHHHHhhhCCCC---chhHHHHHHHHHHhcCCh
Q 046194 333 DQNGCYEEAIMNFCAMRRDGLMSSN-FSLISTLSSCASLGWIMLGQQIHGEGLKLGLDS---DVSVSNALLSLYADAGYL 408 (934)
Q Consensus 333 ~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~---~~~~~~~li~~y~~~g~~ 408 (934)
...|++++|+..|.++.+. .|+. .++..+...+...|+++.|..+++.+++.+..+ ...++..+...|.+.|++
T Consensus 46 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 46 LLNEQPDKAIDLFIEMLKV--DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HhcCChHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 3444444555555554442 2222 233333334444444444444444444322111 123566777788888888
Q ss_pred HHHHHHHhhCCC---CCccchHHHHHHHHhCCccHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhccCCchHHHHHHHHH
Q 046194 409 SRCLKVFFLMPE---HDQVSWNSVIGAFADSEALVSEAVKYYLDMRRAGWSPNGVTFINILAAASSFSMGKLGHQVHAQV 485 (934)
Q Consensus 409 ~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~ 485 (934)
+.|..+|+++.+ .+..+++.++..+.+.|++ ++|++.++.+.+.+..+....
T Consensus 124 ~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~------------------------ 178 (389)
T PRK11788 124 DRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDW-QKAIDVAERLEKLGGDSLRVE------------------------ 178 (389)
T ss_pred HHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchH-HHHHHHHHHHHHhcCCcchHH------------------------
Confidence 888888887764 3556777778888888887 888888888776542221110
Q ss_pred HHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccC-C-CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhH
Q 046194 486 IKYNVANETTIENALLSCYGKCGEMDDCEKIFARMSER-R-DEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFT 563 (934)
Q Consensus 486 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 563 (934)
....+..+...+.+.|++++|...|+++.+. | +...+..+...|.+.|++++|.++|+++...+......+
T Consensus 179 -------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 251 (389)
T PRK11788 179 -------IAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEV 251 (389)
T ss_pred -------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHH
Confidence 0112345666777888888888888887653 3 345677777888888888888888888876532222344
Q ss_pred HHHHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCC--CCCcccccHHHHHHHH--
Q 046194 564 FATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMP--VRNVYSWNSMISGYAR-- 639 (934)
Q Consensus 564 ~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~-- 639 (934)
+..+..++...|++++|.+.+..+.+.. |+...+..++..|.+.|++++|..+|+++. .|+..+++.++..+..
T Consensus 252 ~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~ 329 (389)
T PRK11788 252 LPKLMECYQALGDEAEGLEFLRRALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEA 329 (389)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhcc
Confidence 5556666666666666666666665542 333444556666666666666666665543 2555555555555443
Q ss_pred -cCChHHHHHHHHHHHHCCCCCChh
Q 046194 640 -HGHGDKALTLFSQMKLDGPLPDHV 663 (934)
Q Consensus 640 -~g~~~~A~~l~~~m~~~g~~p~~~ 663 (934)
+|+.++++.+|++|.+++++|+..
T Consensus 330 ~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 330 EEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred CCccchhHHHHHHHHHHHHHhCCCC
Confidence 345566666666666555555544
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.6e-17 Score=181.34 Aligned_cols=290 Identities=10% Similarity=0.068 Sum_probs=193.3
Q ss_pred HHhcCCHHHHHHHHHhhccC-C-CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC---HhHHHHHHHHHhchhhHH
Q 046194 504 YGKCGEMDDCEKIFARMSER-R-DEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLD---HFTFATVLSACASVATLE 578 (934)
Q Consensus 504 ~~~~g~~~~A~~~~~~~~~~-p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~---~~t~~~ll~a~~~~~~~~ 578 (934)
+...|++++|...|.++... | +..+|..+...|...|++++|..+++.+...+..++ ...+..+...+...|+++
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~ 124 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLD 124 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 34556666666666665543 3 333555566666666666666666666655322111 133455555566666666
Q ss_pred HHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCCCCc--------ccccHHHHHHHHcCChHHHHHHH
Q 046194 579 RGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPVRNV--------YSWNSMISGYARHGHGDKALTLF 650 (934)
Q Consensus 579 ~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~--------~~~~~li~~~~~~g~~~~A~~l~ 650 (934)
.|..++..+.+.. +.+..+++.++.+|.+.|++++|.+.|+.+.+.+. ..|..+...+...|++++|+..|
T Consensus 125 ~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 203 (389)
T PRK11788 125 RAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALL 203 (389)
T ss_pred HHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 6666666665531 23455666666777777777777777766643211 13445666677788888888888
Q ss_pred HHHHHCCCCCC-hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC--cccHHHHHHHHhhcCChHHHHHHHHhC-CC
Q 046194 651 SQMKLDGPLPD-HVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ--LEQFSCMVDLLGRAGELDKIEEFINKM-PI 726 (934)
Q Consensus 651 ~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~y~~li~~l~~~g~~~~A~~~~~~m-~~ 726 (934)
+++.+. .|+ ...+..+...+.+.|++++|.++|+++.+. .|+ ...+..++.+|.+.|++++|.+.++++ ..
T Consensus 204 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 278 (389)
T PRK11788 204 KKALAA--DPQCVRASILLGDLALAQGDYAAAIEALERVEEQ---DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE 278 (389)
T ss_pred HHHHhH--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 888774 344 445666667788888888888888888763 233 456777888888888888888888877 45
Q ss_pred CCCHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHc---CCChHHHHHHHHHHHhCCCcCCCc
Q 046194 727 TPNSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYAS---GGKWEDVAKARKAMKEAEVKKEAG 802 (934)
Q Consensus 727 ~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~---~g~~~~a~~~~~~m~~~~~~~~~~ 802 (934)
.|+...+..+...+... |+.+.|...++++++..|+++. +..+...+.. .|+.+++..+++.|.+++++++|.
T Consensus 279 ~p~~~~~~~la~~~~~~--g~~~~A~~~l~~~l~~~P~~~~-~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 279 YPGADLLLALAQLLEEQ--EGPEAAQALLREQLRRHPSLRG-FHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred CCCchHHHHHHHHHHHh--CCHHHHHHHHHHHHHhCcCHHH-HHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 67766667777788888 8888888888888888887764 4444444432 468999999999999999999996
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.3e-15 Score=176.67 Aligned_cols=246 Identities=11% Similarity=0.038 Sum_probs=178.2
Q ss_pred CChhHHHHHHHHHHHcC-CCCC-HhHHHHHHHHHhchhhHHHHHHHHHHHHHhCCCC-cHhHHHHHHHHHHhcCCHHHHH
Q 046194 540 ELLPKAMNLVWFMMQRG-QRLD-HFTFATVLSACASVATLERGMEVHACGVRACLEF-DVVIGSALVDMYSKCGRIDYAS 616 (934)
Q Consensus 540 g~~~~A~~l~~~m~~~g-~~p~-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~-~~~~~~~li~~y~~~g~~~~A~ 616 (934)
+++++|++.|++....+ ..|+ ...+..+...+...|++++|...++.+++. .| +...+..+...|...|++++|.
T Consensus 308 ~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~ 385 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKAE 385 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHHH
Confidence 45666666666666543 2232 234444445555666666666666666653 23 3445666777777888888888
Q ss_pred HHhccCCC---CCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhh
Q 046194 617 RFFDLMPV---RNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPD-HVTFVGVLSACSHAGLVDEGFKHFKSMSQVY 692 (934)
Q Consensus 617 ~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 692 (934)
..|+.... .+...|..+...|...|++++|+..|++..+. .|+ ...+..+...+.+.|++++|+..|+...+.
T Consensus 386 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~- 462 (615)
T TIGR00990 386 EDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN- 462 (615)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-
Confidence 88776542 34567778888888889999999999988884 565 455666777788899999999999988763
Q ss_pred CCCCC-cccHHHHHHHHhhcCChHHHHHHHHhC-CCCCCH-------HH-HHHHHHHHHhccCCCcHHHHHHHHHHHhcC
Q 046194 693 GLIPQ-LEQFSCMVDLLGRAGELDKIEEFINKM-PITPNS-------LI-WRTVLGACCRANCRKTELGRKAANMLFEME 762 (934)
Q Consensus 693 ~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p~~-------~~-~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~ 762 (934)
.|+ ...|..+..+|...|++++|.+.+++. .+.|+. .. ++..+..+... |++++|...++++++++
T Consensus 463 --~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~--~~~~eA~~~~~kAl~l~ 538 (615)
T TIGR00990 463 --FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWK--QDFIEAENLCEKALIID 538 (615)
T ss_pred --CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHhcC
Confidence 344 678888899999999999999998886 444421 11 12222223335 89999999999999999
Q ss_pred CCCCchHHHHHHHHHcCCChHHHHHHHHHHHh
Q 046194 763 PQNAVNYVLLANMYASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 763 p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 794 (934)
|++...+..++.+|...|++++|.+.++...+
T Consensus 539 p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 539 PECDIAVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 99999999999999999999999999888764
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.1e-14 Score=154.68 Aligned_cols=702 Identities=11% Similarity=0.005 Sum_probs=353.7
Q ss_pred HHHHHHHHhcCCCCchhhhHHHHHHhhcCChhhHHHhhccCCCC----ChhhHHHHHHHHhcCCChhhHHHHHHHHHHcC
Q 046194 6 LFHLQILKHGFAYDVFLCNTLINVYVRVGDLASASKLFDEMPDR----NSVSWACIVSGYTHKGMSNEACKMFKEMVRAG 81 (934)
Q Consensus 6 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 81 (934)
.+++.+...|+.|+..||.+||..||..|+++.|. +|.-|.-+ +...++.++.+..+.++.+.|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 57889999999999999999999999999999999 88888643 4446777888888888777764
Q ss_pred CCCCcccHHHHHHHhhhcCCCChhhhhHHHHHHH-------HhcCC---------------CCchhhHHHHHHhhhCCCC
Q 046194 82 FLLNRYALGSVLRACQECGPSGFKFGMQVHCLVL-------KSNQT---------------FDGLVSNVLIAMYGSCLES 139 (934)
Q Consensus 82 ~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~-------~~g~~---------------~~~~~~~~li~~y~~~~g~ 139 (934)
.|...||..|+.+|+.. ||+.....+-..+. ..|.. .-+...|..+...-+ |-
T Consensus 80 -ep~aDtyt~Ll~ayr~h--GDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~e--gl 154 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIH--GDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLE--GL 154 (1088)
T ss_pred -CCchhHHHHHHHHHHhc--cchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHH--HH
Confidence 57777888888888887 66554332222111 11110 001111222222222 44
Q ss_pred hHHHHHHhhccCCC--CcccHHHHHHHHHcCCCchHHHHHHHHHHHccCCCCCCCCceeHHHHHHHHhcCccccchHHHH
Q 046194 140 TDCARRIFEEIETR--DLISWNSIISVYSQRGDTISVFKLFSRMQREGFRYSLKPNEYTFGSLITAAYSSVLSGSYLLQQ 217 (934)
Q Consensus 140 ~~~a~~~f~~~~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~p~~~t~~~ll~a~~~~~~~~~~~a~~ 217 (934)
++.+.+++..+|.- +- ..-.+++-..... .-.+-+..|.+.++. .||+.+|..++.+....|+.+. |..
T Consensus 155 waqllkll~~~Pvsa~~~-p~~vfLrqnv~~n---tpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~--Ak~ 225 (1088)
T KOG4318|consen 155 WAQLLKLLAKVPVSAWNA-PFQVFLRQNVVDN---TPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDG--AKN 225 (1088)
T ss_pred HHHHHHHHhhCCcccccc-hHHHHHHHhccCC---chHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhh--HHH
Confidence 55555555555421 10 0000122222111 111222223333320 3666777777776666666666 677
Q ss_pred HHHHHHHhCCCCCccchhHHHHHHHhcCChHHHHHHHHHhhhcccchhhhhhhhhhhhhHHHHHHHHHcCCCchhHHHHH
Q 046194 218 ILAMVKKAGLLSDLYVGSALVSGFARLGNFYYARKIFEQMIQKNVVSMNGLMEGRRKGKEVHGYLIRSGLFDMVAVGNGL 297 (934)
Q Consensus 218 i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~l 297 (934)
++..|++.|++.+..-+..|+-+ .++...++.+++.|.+ .|+.|+..|+.-.
T Consensus 226 ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe-------------------------~gv~p~seT~ady 277 (1088)
T KOG4318|consen 226 LLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQE-------------------------KGVQPGSETQADY 277 (1088)
T ss_pred HHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHH-------------------------hcCCCCcchhHHH
Confidence 77777777776666666666655 5555566666555543 3555555555444
Q ss_pred HHHhhccCChhHHHHHHhcCCCCCcccHHHHHHHHHhCCCh-----hHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCc
Q 046194 298 VNMYAKCGTIDDSRSVFRFMIGKDSVSWNTMISGLDQNGCY-----EEAIMNFCAMRRDGLMSSNFSLISTLSSCASLGW 372 (934)
Q Consensus 298 i~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~-----~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 372 (934)
+-.+.+.|....+....+.----....+..+..+...+... .-.+..+++..-.|+......|...... ...|.
T Consensus 278 vip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l-~hQgk 356 (1088)
T KOG4318|consen 278 VIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKL-RHQGK 356 (1088)
T ss_pred HHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHH-HHcCC
Confidence 44444433322111111000000001111111111000010 1111111111111222222122111111 11233
Q ss_pred hHHHHHHHHHHhhhCCC---CchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcc-chH--H------------HHHHHH
Q 046194 373 IMLGQQIHGEGLKLGLD---SDVSVSNALLSLYADAGYLSRCLKVFFLMPEHDQV-SWN--S------------VIGAFA 434 (934)
Q Consensus 373 ~~~a~~i~~~~~~~g~~---~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~-~~~--~------------li~~~~ 434 (934)
-+...++-+.+..--.. .++..+..++. +.|.+...+... .++ . .++-++
T Consensus 357 ~e~veqlvg~l~npt~r~s~~~V~a~~~~lr------------qyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell 424 (1088)
T KOG4318|consen 357 GEEVEQLVGQLLNPTLRDSGQNVDAFGALLR------------QYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELL 424 (1088)
T ss_pred CchHHHHHhhhcCCccccCcchHHHHHHHHH------------HHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHH
Confidence 33344443333221110 11112222222 222222221110 011 0 000000
Q ss_pred hCCccHHHHHHHHHHHHHcC----CC-------CCcccHHHHHHHHhccCCchHHHHHHHHHHHhcCCCchhHHHHHHHH
Q 046194 435 DSEALVSEAVKYYLDMRRAG----WS-------PNGVTFINILAAASSFSMGKLGHQVHAQVIKYNVANETTIENALLSC 503 (934)
Q Consensus 435 ~~g~~~~~A~~l~~~m~~~g----~~-------p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~ 503 (934)
.+-+. ..+++-+..+.... .. |-...-..++..|++..+...+...-+.....-+. ..|..||+.
T Consensus 425 ~~lrk-ns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~lf~---g~ya~Li~l 500 (1088)
T KOG4318|consen 425 ENLRK-NSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDLLFA---GLYALLIKL 500 (1088)
T ss_pred HHhCc-chHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hHHHHHhhh
Confidence 00011 11111111110000 00 01111233445555555555554433333222222 567899999
Q ss_pred HHhcCCHHHHHHHHHhhccC-----CCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCC-HhHHHHHHHHHhchhh
Q 046194 504 YGKCGEMDDCEKIFARMSER-----RDEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQ-RLD-HFTFATVLSACASVAT 576 (934)
Q Consensus 504 ~~~~g~~~~A~~~~~~~~~~-----p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~-~~t~~~ll~a~~~~~~ 576 (934)
+....+.+.|..+.+++..+ -|..-+..+.+...+.+....+..++.+|.+.-. .|+ ..++-.+++..+..|.
T Consensus 501 ~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agq 580 (1088)
T KOG4318|consen 501 MDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQ 580 (1088)
T ss_pred HHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccC
Confidence 99999999999999888775 2455677888888999999999999999887422 232 3556667777788888
Q ss_pred HHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCC---CCcccccHHHHHHHH--cCChHHHHHHHH
Q 046194 577 LERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPV---RNVYSWNSMISGYAR--HGHGDKALTLFS 651 (934)
Q Consensus 577 ~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~--~g~~~~A~~l~~ 651 (934)
.+.-+++++.+...|+.-+ .-++....+.++...|.++++...+ +.+..-..+.+.+-+ ..+++++..+-.
T Consensus 581 qe~Lkkl~d~lvslgl~et----gPl~~vhLrkdd~s~a~ea~e~~~qkyk~~P~~~e~lcrlv~ke~td~~qk~mDls~ 656 (1088)
T KOG4318|consen 581 QEKLKKLADILVSLGLSET----GPLWMVHLRKDDQSAAQEAPEPEEQKYKPYPKDLEGLCRLVYKETTDSPQKTMDLSI 656 (1088)
T ss_pred HHHHHHHHHHHHHhhhhhc----ccceEEEeeccchhhhhhcchHHHHHhcCChHHHHHHHHHHHhhccccHHHHHhhcc
Confidence 8888898888887776542 2344455667777777777765432 111111111111110 111112211111
Q ss_pred HHHHCCCCCChhhHHHHHHHHHhhCcHHHHHHHHHHhH----------HhhC-CC---------CCcccHHHHHHHHhhc
Q 046194 652 QMKLDGPLPDHVTFVGVLSACSHAGLVDEGFKHFKSMS----------QVYG-LI---------PQLEQFSCMVDLLGRA 711 (934)
Q Consensus 652 ~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~----------~~~~-~~---------p~~~~y~~li~~l~~~ 711 (934)
. +..+.+.|.+.++.++.+.=- .+.| +. -+..+..-|+..|.+.
T Consensus 657 ~----------------iq~f~k~g~~~~a~di~etpG~r~r~~RDr~~de~e~~~lEll~elt~~lg~~dRLL~sy~~~ 720 (1088)
T KOG4318|consen 657 P----------------IQKFEKLGSCVDAGDITETPGVRCRNGRDRDTDEGEIVPLELLLELTHELGKNDRLLQSYLEE 720 (1088)
T ss_pred h----------------hHHHHhcccccchhhccccCcccccCCCccccccCccccHHHHHHHHhHhHHHHHHHHHHHhh
Confidence 1 111334444444333322100 0000 00 0112233478899999
Q ss_pred CChHHHHHHHHhCCCCCCHHHHHHHHHHHHhccC-CCcHHHHHHHHHHHhcCCCCCc---hHHHHHHHHHcCCChHHHHH
Q 046194 712 GELDKIEEFINKMPITPNSLIWRTVLGACCRANC-RKTELGRKAANMLFEMEPQNAV---NYVLLANMYASGGKWEDVAK 787 (934)
Q Consensus 712 g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~-~~~~~a~~~~~~~~~~~p~~~~---~y~~l~~~~~~~g~~~~a~~ 787 (934)
|+++.|..++.++++.|+..+...|...++.++. -++-++...-+++.++.|..+. .|.-.+-+..+....+.|.+
T Consensus 721 g~~erA~glwnK~QV~k~~~~l~~LAsIlr~~n~evdvPe~q~e~ekas~~~~~f~ttt~~~~~~a~~a~q~~qkkaAkk 800 (1088)
T KOG4318|consen 721 GRIERASGLWNKDQVSKSPMKLFHLASILRRMNEEVDVPEIQAETEKASELRTLFPTTTCYYEGYAFFATQTEQKKAAKK 800 (1088)
T ss_pred hHHHHHHhHHhhCcCCcchHHHHHHHHHHHhhchhccchhHHHHHHHHHhcccccccchHhhhhhHHHHhhHHHHHHHHH
Confidence 9999999999999999999999999998888731 2444555666677777665443 34444444444445557888
Q ss_pred HHHHHHhCCC
Q 046194 788 ARKAMKEAEV 797 (934)
Q Consensus 788 ~~~~m~~~~~ 797 (934)
.+...+++..
T Consensus 801 ~f~r~eeq~~ 810 (1088)
T KOG4318|consen 801 CFERLEEQLT 810 (1088)
T ss_pred HHHHHHHccC
Confidence 8888887743
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.5e-14 Score=141.41 Aligned_cols=442 Identities=14% Similarity=0.137 Sum_probs=275.2
Q ss_pred hhhHHHHHHHHhcCCChhhHHHHHHHHHHcCCCCCcccHHHHHHHhhhcCCCChhhhhH-HHHHHHHhcCCCCchhhHHH
Q 046194 51 SVSWACIVSGYTHKGMSNEACKMFKEMVRAGFLLNRYALGSVLRACQECGPSGFKFGMQ-VHCLVLKSNQTFDGLVSNVL 129 (934)
Q Consensus 51 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~l 129 (934)
+++=|.|+ -....|...++.-+|+.|+..|+..+...-..|++..+-.....+..+.. -+-.+.+.| +.+..+|
T Consensus 116 V~~E~nL~-kmIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW--- 190 (625)
T KOG4422|consen 116 VETENNLL-KMISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW--- 190 (625)
T ss_pred hcchhHHH-HHHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc---
Confidence 33445554 34567888889999999999999988887777776655442233332221 112222223 2333344
Q ss_pred HHHhhhCCCChHHHHHHhhccCCCCcccHHHHHHHHHcCCCchHHHHHHHHHHHccCCCCCCCCceeHHHHHHHHhcCcc
Q 046194 130 IAMYGSCLESTDCARRIFEEIETRDLISWNSIISVYSQRGDTISVFKLFSRMQREGFRYSLKPNEYTFGSLITAAYSSVL 209 (934)
Q Consensus 130 i~~y~~~~g~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~p~~~t~~~ll~a~~~~~~ 209 (934)
|. |++.+ -+|+..| +...+|.+||.|+|+--..+.|.+++++-+...+ +.+..+||.+|.+.+-+.
T Consensus 191 -----K~-G~vAd--L~~E~~P-KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~----kv~~~aFN~lI~~~S~~~- 256 (625)
T KOG4422|consen 191 -----KS-GAVAD--LLFETLP-KTDETVSIMIAGLCKFSSLERARELYKEHRAAKG----KVYREAFNGLIGASSYSV- 256 (625)
T ss_pred -----cc-ccHHH--HHHhhcC-CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhh----eeeHHhhhhhhhHHHhhc-
Confidence 22 65544 5566655 4556899999999999999999999999988877 899999999998865443
Q ss_pred ccchHHHHHHHHHHHhCCCCCccchhHHHHHHHhcCChHHHHHHHHHhhhcccchhhhhhhhhhhhhHHHHHHHHHcCCC
Q 046194 210 SGSYLLQQILAMVKKAGLLSDLYVGSALVSGFARLGNFYYARKIFEQMIQKNVVSMNGLMEGRRKGKEVHGYLIRSGLFD 289 (934)
Q Consensus 210 ~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~ 289 (934)
.++++.+|.+..+.||..|+|++++...+.|+++.|.+.+ .++.+.+...|+.|
T Consensus 257 -----~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aa---------------------lqil~EmKeiGVeP 310 (625)
T KOG4422|consen 257 -----GKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAA---------------------LQILGEMKEIGVEP 310 (625)
T ss_pred -----cHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHH---------------------HHHHHHHHHhCCCc
Confidence 5788999999999999999999999999999999988763 44556677789999
Q ss_pred chhHHHHHHHHhhccCChhHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC----ChhhHHHHHH
Q 046194 290 MVAVGNGLVNMYAKCGTIDDSRSVFRFMIGKDSVSWNTMISGLDQNGCYEEAIMNFCAMRRDGLMS----SNFSLISTLS 365 (934)
Q Consensus 290 ~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p----~~~t~~~ll~ 365 (934)
...+|.-+|..+.+.++..+.. .+|- .++.+.+-.+.++| |...|...++
T Consensus 311 sLsSyh~iik~f~re~dp~k~a-----------s~~i---------------~dI~N~ltGK~fkp~~p~d~~FF~~AM~ 364 (625)
T KOG4422|consen 311 SLSSYHLIIKNFKRESDPQKVA-----------SSWI---------------NDIQNSLTGKTFKPITPTDNKFFQSAMS 364 (625)
T ss_pred chhhHHHHHHHhcccCCchhhh-----------HHHH---------------HHHHHhhccCcccCCCCchhHHHHHHHH
Confidence 8888888888776666554310 0110 11222222222333 4566888899
Q ss_pred HhhccCchHHHHHHHHHHhhhC----CCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCccchHHHHHHHHhCCccHH
Q 046194 366 SCASLGWIMLGQQIHGEGLKLG----LDSDVSVSNALLSLYADAGYLSRCLKVFFLMPEHDQVSWNSVIGAFADSEALVS 441 (934)
Q Consensus 366 a~~~~~~~~~a~~i~~~~~~~g----~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~ 441 (934)
.|.+..+.+.|.++++.+.... +.|+.. ...-|.-+....++.... +
T Consensus 365 Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~----------------------------~~fYyr~~~~licq~es~-~ 415 (625)
T KOG4422|consen 365 ICSSLRDLELAYQVHGLLKTGDNWKFIGPDQH----------------------------RNFYYRKFFDLICQMESI-D 415 (625)
T ss_pred HHHHhhhHHHHHHHHHHHHcCCchhhcChHHH----------------------------HHHHHHHHHHHHHHHHHH-H
Confidence 9999999999999998765321 112110 011122333444444444 6
Q ss_pred HHHHHHHHHHHcCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcC-CH--------H-
Q 046194 442 EAVKYYLDMRRAGWSPNGVTFINILAAASSFSMGKLGHQVHAQVIKYNVANETTIENALLSCYGKCG-EM--------D- 511 (934)
Q Consensus 442 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g-~~--------~- 511 (934)
.-+..|..|.-.-+-|+..+...+++|....+.++...+++..++..|...+....--++...++.. .. .
T Consensus 416 ~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~ 495 (625)
T KOG4422|consen 416 VTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQV 495 (625)
T ss_pred HHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHH
Confidence 6677777777666777777777777777777777777777777777665444433333333333322 00 0
Q ss_pred ----HHHHHHHhh-------ccC-CCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCC----CCCHhHHHHHHHHHhchh
Q 046194 512 ----DCEKIFARM-------SER-RDEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQ----RLDHFTFATVLSACASVA 575 (934)
Q Consensus 512 ----~A~~~~~~~-------~~~-p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~----~p~~~t~~~ll~a~~~~~ 575 (934)
-|..+++.. ..+ -.....+.+.-.+.+.|..++|.++|..+.+.+- .|......-++.+....+
T Consensus 496 ~~ak~aad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~ 575 (625)
T KOG4422|consen 496 AFAKCAADIKEAYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSN 575 (625)
T ss_pred HHHHHHHHHHHHHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcC
Confidence 011111111 111 1233344455556666777777776666644331 222333334445555555
Q ss_pred hHHHHHHHHHHHHHhCC
Q 046194 576 TLERGMEVHACGVRACL 592 (934)
Q Consensus 576 ~~~~a~~i~~~~~~~~~ 592 (934)
+..+|...++.+...++
T Consensus 576 spsqA~~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 576 SPSQAIEVLQLASAFNL 592 (625)
T ss_pred CHHHHHHHHHHHHHcCc
Confidence 66666666666655443
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.1e-14 Score=170.10 Aligned_cols=352 Identities=10% Similarity=-0.010 Sum_probs=268.7
Q ss_pred HhcCChHHHHHHHhhCCCC------CccchHHHHHHHHhCCccHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhccCCch
Q 046194 403 ADAGYLSRCLKVFFLMPEH------DQVSWNSVIGAFADSEALVSEAVKYYLDMRRAGWSPNGVTFINILAAASSFSMGK 476 (934)
Q Consensus 403 ~~~g~~~~A~~~f~~~~~~------~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~ 476 (934)
.+..+++.-.-.|...+++ +..-...++..+.+.|+. ++|+.+++........+.. .+..+..++...|+++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~A~~l~~~~l~~~p~~~~-~l~~l~~~~l~~g~~~ 93 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDET-DVGLTLLSDRVLTAKNGRD-LLRRWVISPLASSQPD 93 (656)
T ss_pred hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCc-chhHHHhHHHHHhCCCchh-HHHHHhhhHhhcCCHH
Confidence 3455666655666655542 233445567788888999 9999999988876544433 3444446666789999
Q ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccC-C-CcchHHHHHHHHHhcCChhHHHHHHHHHHH
Q 046194 477 LGHQVHAQVIKYNVANETTIENALLSCYGKCGEMDDCEKIFARMSER-R-DEVSWNSMISGYIHNELLPKAMNLVWFMMQ 554 (934)
Q Consensus 477 ~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 554 (934)
.|.+.+..+.+.. +.+...+..+...+.+.|++++|...|++.... | +...|..+...+...|++++|...++.+..
T Consensus 94 ~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~ 172 (656)
T PRK15174 94 AVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQ 172 (656)
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 9999999988764 234556778888999999999999999988773 4 566788889999999999999999998876
Q ss_pred cCCCCCHhHHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCC---CCccccc
Q 046194 555 RGQRLDHFTFATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPV---RNVYSWN 631 (934)
Q Consensus 555 ~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~ 631 (934)
....+.. .+.. +..+...|++++|...+..+.+....++......+...+.+.|++++|...|+.... .+...+.
T Consensus 173 ~~P~~~~-a~~~-~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~ 250 (656)
T PRK15174 173 EVPPRGD-MIAT-CLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRR 250 (656)
T ss_pred hCCCCHH-HHHH-HHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHH
Confidence 5332222 2222 334778899999999999887764334444555667788899999999999998763 3455788
Q ss_pred HHHHHHHHcCChHH----HHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHH
Q 046194 632 SMISGYARHGHGDK----ALTLFSQMKLDGPLPD-HVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMV 705 (934)
Q Consensus 632 ~li~~~~~~g~~~~----A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li 705 (934)
.+...|...|++++ |+..|++..+ ..|+ ...+..+...+...|++++|...++...+ ..|+ ...+..+.
T Consensus 251 ~Lg~~l~~~G~~~eA~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~---l~P~~~~a~~~La 325 (656)
T PRK15174 251 SLGLAYYQSGRSREAKLQAAEHWRHALQ--FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLA---THPDLPYVRAMYA 325 (656)
T ss_pred HHHHHHHHcCCchhhHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHH
Confidence 88999999999985 8999999988 4566 55678888889999999999999999876 3455 56677889
Q ss_pred HHHhhcCChHHHHHHHHhC-CCCCCHHHHHH-HHHHHHhccCCCcHHHHHHHHHHHhcCCCCC
Q 046194 706 DLLGRAGELDKIEEFINKM-PITPNSLIWRT-VLGACCRANCRKTELGRKAANMLFEMEPQNA 766 (934)
Q Consensus 706 ~~l~~~g~~~~A~~~~~~m-~~~p~~~~~~~-ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 766 (934)
.+|.+.|++++|.+.++++ ...|+...+.. +..++... |+.+.|...++++++..|++.
T Consensus 326 ~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~--G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 326 RALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQA--GKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHC--CCHHHHHHHHHHHHHhChhhc
Confidence 9999999999999999987 46676555443 45566777 999999999999999999864
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.4e-14 Score=169.72 Aligned_cols=357 Identities=10% Similarity=0.029 Sum_probs=219.0
Q ss_pred hHHHHHHHHhCCccHHHHHHHHHHHHHcCCCCC-cccHHHHHHHHhccCCchHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 046194 426 WNSVIGAFADSEALVSEAVKYYLDMRRAGWSPN-GVTFINILAAASSFSMGKLGHQVHAQVIKYNVANETTIENALLSCY 504 (934)
Q Consensus 426 ~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~ 504 (934)
+..+...+.+.|+. ++|.++|++..+. .|+ ......+...+...|+.++|...++.+++.. +.+.. +..+..++
T Consensus 52 ~~~lA~~~~~~g~~-~~A~~~~~~al~~--~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l 126 (765)
T PRK10049 52 YAAVAVAYRNLKQW-QNSLTLWQKALSL--EPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVY 126 (765)
T ss_pred HHHHHHHHHHcCCH-HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHH
Confidence 44444444444444 4444444444332 121 2222333334444444444444444444431 22222 44555556
Q ss_pred HhcCCHHHHHHHHHhhccC-C-CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH------hHHHHHHHHH-----
Q 046194 505 GKCGEMDDCEKIFARMSER-R-DEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDH------FTFATVLSAC----- 571 (934)
Q Consensus 505 ~~~g~~~~A~~~~~~~~~~-p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~------~t~~~ll~a~----- 571 (934)
...|+.++|...++++... | +...+..+...+...+..++|++.++.... .|+. ......+...
T Consensus 127 ~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~ 203 (765)
T PRK10049 127 KRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTR 203 (765)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhccccc
Confidence 6666666666666665553 3 333344455555556666666665554332 2221 0011111111
Q ss_pred hchhhH---HHHHHHHHHHHHh-CCCCcHh--HHHH---HHHHHHhcCCHHHHHHHhccCCCCC--ccc--ccHHHHHHH
Q 046194 572 ASVATL---ERGMEVHACGVRA-CLEFDVV--IGSA---LVDMYSKCGRIDYASRFFDLMPVRN--VYS--WNSMISGYA 638 (934)
Q Consensus 572 ~~~~~~---~~a~~i~~~~~~~-~~~~~~~--~~~~---li~~y~~~g~~~~A~~~~~~~~~~~--~~~--~~~li~~~~ 638 (934)
...+.+ +.|.+.++.+.+. ...|+.. ...+ .+.++...|++++|...|+.+...+ ... -..+...|.
T Consensus 204 ~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl 283 (765)
T PRK10049 204 SEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYL 283 (765)
T ss_pred ChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHH
Confidence 122233 5666667666653 2222221 1111 1223456689999999999887532 111 122567888
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCh-----hhHHHHHHHHHhhCcHHHHHHHHHHhHHhhC----------CCCC---ccc
Q 046194 639 RHGHGDKALTLFSQMKLDGPLPDH-----VTFVGVLSACSHAGLVDEGFKHFKSMSQVYG----------LIPQ---LEQ 700 (934)
Q Consensus 639 ~~g~~~~A~~l~~~m~~~g~~p~~-----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~----------~~p~---~~~ 700 (934)
..|++++|+..|+++.+. .|.. .....+..++...|++++|.++++.+.+... -.|+ ...
T Consensus 284 ~~g~~e~A~~~l~~~l~~--~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a 361 (765)
T PRK10049 284 KLHQPEKAQSILTELFYH--PETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQG 361 (765)
T ss_pred hcCCcHHHHHHHHHHhhc--CCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHH
Confidence 999999999999998764 3332 3355566678899999999999998876311 0122 224
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHc
Q 046194 701 FSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYAS 778 (934)
Q Consensus 701 y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~ 778 (934)
+..+..++...|++++|++.++++ ...| +...+..+...+... |+.+.|+..++++++++|+++..+..++.++..
T Consensus 362 ~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~--g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~ 439 (765)
T PRK10049 362 QSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQAR--GWPRAAENELKKAEVLEPRNINLEVEQAWTALD 439 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH
Confidence 556788999999999999999997 4444 467888899998888 999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHh
Q 046194 779 GGKWEDVAKARKAMKE 794 (934)
Q Consensus 779 ~g~~~~a~~~~~~m~~ 794 (934)
.|+|++|.++++.+.+
T Consensus 440 ~~~~~~A~~~~~~ll~ 455 (765)
T PRK10049 440 LQEWRQMDVLTDDVVA 455 (765)
T ss_pred hCCHHHHHHHHHHHHH
Confidence 9999999999988875
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.6e-13 Score=138.22 Aligned_cols=440 Identities=12% Similarity=0.054 Sum_probs=290.9
Q ss_pred eHHHHHHHHhcCccccchHHHHHHHHHHHhCCCCCccchhHHHHHHHhcCChHHHH---HHHHHhhhc---ccchhhhhh
Q 046194 196 TFGSLITAAYSSVLSGSYLLQQILAMVKKAGLLSDLYVGSALVSGFARLGNFYYAR---KIFEQMIQK---NVVSMNGLM 269 (934)
Q Consensus 196 t~~~ll~a~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~---~l~~~m~~~---~~~~~~~~l 269 (934)
|=+.+++- .+.+.+.. +.-+++.|.+.|++.+..+.-.|++.-+-.+.-+... +-|-.|... ...+|
T Consensus 118 ~E~nL~km-IS~~EvKD--s~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sW---- 190 (625)
T KOG4422|consen 118 TENNLLKM-ISSREVKD--SCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSW---- 190 (625)
T ss_pred chhHHHHH-Hhhcccch--hHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccc----
Confidence 44444443 34455555 7788888888888877777666665544333222211 122222211 11122
Q ss_pred hhhhhhhHHHHHHHHHcCCCchhHHHHHHHHhhccCChhHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHH
Q 046194 270 EGRRKGKEVHGYLIRSGLFDMVAVGNGLVNMYAKCGTIDDSRSVFRFMIGKDSVSWNTMISGLDQNGCYEEAIMNFCAMR 349 (934)
Q Consensus 270 ~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 349 (934)
|.|.+.+ ++-+...+...++..||.|+++--+.+.|.++|++-.
T Consensus 191 ---------------------------------K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~ 234 (625)
T KOG4422|consen 191 ---------------------------------KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHR 234 (625)
T ss_pred ---------------------------------ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4455444 4444455567899999999999999999999999999
Q ss_pred HCCCCCChhhHHHHHHHhhccCchHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCccchHHH
Q 046194 350 RDGLMSSNFSLISTLSSCASLGWIMLGQQIHGEGLKLGLDSDVSVSNALLSLYADAGYLSRCLKVFFLMPEHDQVSWNSV 429 (934)
Q Consensus 350 ~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~l 429 (934)
....+.+..+|+.+|.+.+-. .++.+..+|+...+.||..++|+++...++.|+++.|.
T Consensus 235 ~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar----------------- 293 (625)
T KOG4422|consen 235 AAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDAR----------------- 293 (625)
T ss_pred HhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHH-----------------
Confidence 998999999999999876543 34889999999999999999999999999999998876
Q ss_pred HHHHHhCCccHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhccCCchH-HHHHHHHHHH----hcCC----CchhHHHHH
Q 046194 430 IGAFADSEALVSEAVKYYLDMRRAGWSPNGVTFINILAAASSFSMGKL-GHQVHAQVIK----YNVA----NETTIENAL 500 (934)
Q Consensus 430 i~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~-a~~i~~~~~~----~g~~----~~~~~~~~l 500 (934)
..|++++.+|++-|+.|...+|..+|..+++.++... +..+...+.. ..+. .|...+..-
T Consensus 294 -----------~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~A 362 (625)
T KOG4422|consen 294 -----------KAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSA 362 (625)
T ss_pred -----------HHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHH
Confidence 7888899999999999999999999998888877643 4444444433 2222 244556667
Q ss_pred HHHHHhcCCHHHHHHHHHhhccC-------CC---cchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHH
Q 046194 501 LSCYGKCGEMDDCEKIFARMSER-------RD---EVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSA 570 (934)
Q Consensus 501 i~~~~~~g~~~~A~~~~~~~~~~-------p~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 570 (934)
++.|.+..+.+-|.++-.-+... |+ .+-|..+....|+....+.-+.+|+.|.-.-+-|+..+...+++|
T Consensus 363 M~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA 442 (625)
T KOG4422|consen 363 MSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRA 442 (625)
T ss_pred HHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHH
Confidence 77777888888888877665542 22 223556777788888899999999999888888999999999999
Q ss_pred HhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCCCCcccccHHHHHHHHc--CChHHHHH
Q 046194 571 CASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPVRNVYSWNSMISGYARH--GHGDKALT 648 (934)
Q Consensus 571 ~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~--g~~~~A~~ 648 (934)
....+.++-..+++..++..|.........-+...+++.. +.|+...-..+-...++. .-.+....
T Consensus 443 ~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k------------~hp~tp~r~Ql~~~~ak~aad~~e~~e~ 510 (625)
T KOG4422|consen 443 LDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDK------------LHPLTPEREQLQVAFAKCAADIKEAYES 510 (625)
T ss_pred HhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCC------------CCCCChHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999888775544333322222222221 122212111111111110 11112222
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHH---HHhhcCChHHHHHHHHhC
Q 046194 649 LFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVD---LLGRAGELDKIEEFINKM 724 (934)
Q Consensus 649 l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~---~l~~~g~~~~A~~~~~~m 724 (934)
.-.+|.+....|. ..+.++-.+.+.|..++|.++|..+.+.++-.|-....++|+. .-.+......|...++-|
T Consensus 511 ~~~R~r~~~~~~t--~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a 587 (625)
T KOG4422|consen 511 QPIRQRAQDWPAT--SLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLA 587 (625)
T ss_pred hHHHHHhccCChh--HHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 2334555444443 3445555577888888888888888665555566555665443 333444555555555544
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.3e-14 Score=168.09 Aligned_cols=366 Identities=9% Similarity=-0.030 Sum_probs=236.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhhCC---CCCccchHHHHHHHHhCCccHHHHHHHHHHHHHcCCCCCcccHHHHHHHHh
Q 046194 394 VSNALLSLYADAGYLSRCLKVFFLMP---EHDQVSWNSVIGAFADSEALVSEAVKYYLDMRRAGWSPNGVTFINILAAAS 470 (934)
Q Consensus 394 ~~~~li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 470 (934)
.+..+...+.+.|++++|..+|++.. ..+...+..+...+...|+. ++|+..+++..+. .|+...+..+..++.
T Consensus 51 ~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~-~eA~~~l~~~l~~--~P~~~~~~~la~~l~ 127 (765)
T PRK10049 51 GYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQY-DEALVKAKQLVSG--APDKANLLALAYVYK 127 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 34455555555555555555555532 12333444555555555555 6666666655543 222211444555555
Q ss_pred ccCCchHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccCCCc------chHHHHHHHHH-----hc
Q 046194 471 SFSMGKLGHQVHAQVIKYNVANETTIENALLSCYGKCGEMDDCEKIFARMSERRDE------VSWNSMISGYI-----HN 539 (934)
Q Consensus 471 ~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~------~~~~~li~~~~-----~~ 539 (934)
..|+.+.|...+..+.+.... +...+..+..++.+.|..++|.+.++.....|+. .....++..+. ..
T Consensus 128 ~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~ 206 (765)
T PRK10049 128 RAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEK 206 (765)
T ss_pred HCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChh
Confidence 566666666666666554332 3334455677777788888888888877664431 01112222221 12
Q ss_pred CCh---hHHHHHHHHHHHc-CCCCCHh-HHH----HHHHHHhchhhHHHHHHHHHHHHHhCCC-CcHhHHHHHHHHHHhc
Q 046194 540 ELL---PKAMNLVWFMMQR-GQRLDHF-TFA----TVLSACASVATLERGMEVHACGVRACLE-FDVVIGSALVDMYSKC 609 (934)
Q Consensus 540 g~~---~~A~~l~~~m~~~-g~~p~~~-t~~----~ll~a~~~~~~~~~a~~i~~~~~~~~~~-~~~~~~~~li~~y~~~ 609 (934)
+++ ++|++.++.+... ...|+.. .+. ..+.++...++.++|...++.+.+.+.+ |+- ....+...|...
T Consensus 207 ~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~ 285 (765)
T PRK10049 207 ERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKL 285 (765)
T ss_pred HHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhc
Confidence 233 6788888888754 2233321 111 1134455678899999999998886532 322 222257789999
Q ss_pred CCHHHHHHHhccCCCCCc-------ccccHHHHHHHHcCChHHHHHHHHHHHHCCC-----------CCCh---hhHHHH
Q 046194 610 GRIDYASRFFDLMPVRNV-------YSWNSMISGYARHGHGDKALTLFSQMKLDGP-----------LPDH---VTFVGV 668 (934)
Q Consensus 610 g~~~~A~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-----------~p~~---~t~~~l 668 (934)
|++++|...|+.+...+. ..+..+..++...|++++|+++++++.+... .|+. ..+..+
T Consensus 286 g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~ 365 (765)
T PRK10049 286 HQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLL 365 (765)
T ss_pred CCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHH
Confidence 999999999998754221 2344566678899999999999999987521 1232 123455
Q ss_pred HHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhccCC
Q 046194 669 LSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKM-PITPN-SLIWRTVLGACCRANCR 746 (934)
Q Consensus 669 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~ 746 (934)
...+...|+.++|++.++++... .+.+...+..+..++...|+.++|++.+++. ...|+ ...+..+....... |
T Consensus 366 a~~l~~~g~~~eA~~~l~~al~~--~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~--~ 441 (765)
T PRK10049 366 SQVAKYSNDLPQAEMRARELAYN--APGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDL--Q 441 (765)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHh--C
Confidence 66788999999999999999873 3334788899999999999999999999988 66776 45566666666667 9
Q ss_pred CcHHHHHHHHHHHhcCCCCCch
Q 046194 747 KTELGRKAANMLFEMEPQNAVN 768 (934)
Q Consensus 747 ~~~~a~~~~~~~~~~~p~~~~~ 768 (934)
+++.|+..++.+++..|+++..
T Consensus 442 ~~~~A~~~~~~ll~~~Pd~~~~ 463 (765)
T PRK10049 442 EWRQMDVLTDDVVAREPQDPGV 463 (765)
T ss_pred CHHHHHHHHHHHHHhCCCCHHH
Confidence 9999999999999999999754
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.9e-13 Score=148.47 Aligned_cols=462 Identities=12% Similarity=0.028 Sum_probs=316.5
Q ss_pred hhHHHHHHhcC---CCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCC--CChhhHHHHHHHhhccCchHHHHHHHH
Q 046194 307 IDDSRSVFRFM---IGKDSVSWNTMISGLDQNGCYEEAIMNFCAMRRDGLM--SSNFSLISTLSSCASLGWIMLGQQIHG 381 (934)
Q Consensus 307 ~~~A~~~f~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~t~~~ll~a~~~~~~~~~a~~i~~ 381 (934)
+..+..++... ...|++..|.|..-|.-.|++..++.+...+...... .-...|-.+-+++-..|+++.|...+-
T Consensus 252 ~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~ 331 (1018)
T KOG2002|consen 252 YKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYM 331 (1018)
T ss_pred HHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 34444444433 2237778888888888889999999988888764311 112346677788888899999999888
Q ss_pred HHhhhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC--C-CccchHHHHHHHHhCCcc---HHHHHHHHHHHHHcCC
Q 046194 382 EGLKLGLDSDVSVSNALLSLYADAGYLSRCLKVFFLMPE--H-DQVSWNSVIGAFADSEAL---VSEAVKYYLDMRRAGW 455 (934)
Q Consensus 382 ~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~---~~~A~~l~~~m~~~g~ 455 (934)
...+..-...+..+-.|..+|.+.|+++.+...|+.+.. | +..+...+...|+..+.. .+.|..++.+..+.-
T Consensus 332 ~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~- 410 (1018)
T KOG2002|consen 332 ESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT- 410 (1018)
T ss_pred HHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-
Confidence 877754333234455678899999999999999988764 2 345555666666666422 145555554444332
Q ss_pred CCCcccHHHHHHHHhccCCchHHHHHHHH----HHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccC------CC
Q 046194 456 SPNGVTFINILAAASSFSMGKLGHQVHAQ----VIKYNVANETTIENALLSCYGKCGEMDDCEKIFARMSER------RD 525 (934)
Q Consensus 456 ~p~~~t~~~ll~a~~~~~~~~~a~~i~~~----~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------p~ 525 (934)
+.|...|..+-..+-. ++.......+.. +...+-.+.+.+.|.+...+...|.+++|...|++...+ +|
T Consensus 411 ~~d~~a~l~laql~e~-~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~d 489 (1018)
T KOG2002|consen 411 PVDSEAWLELAQLLEQ-TDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKD 489 (1018)
T ss_pred cccHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCcc
Confidence 3334455444444433 333333555443 445666678888899999999999999999999887653 23
Q ss_pred cc------hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhH-HHHHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhH
Q 046194 526 EV------SWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFT-FATVLSACASVATLERGMEVHACGVRACLEFDVVI 598 (934)
Q Consensus 526 ~~------~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~ 598 (934)
.. +-..+...+-..++.+.|.+.|...... .|+-+. |.-+.......+...+|...+..+... ...++..
T Consensus 490 e~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~-d~~np~a 566 (1018)
T KOG2002|consen 490 EGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNI-DSSNPNA 566 (1018)
T ss_pred ccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhc-ccCCcHH
Confidence 31 1223444555677899999999998875 454332 222222222335666777777766653 2335556
Q ss_pred HHHHHHHHHhcCCHHHHHHHhccCC-----CCCcccccHHHHHHHH------------cCChHHHHHHHHHHHHCCCCCC
Q 046194 599 GSALVDMYSKCGRIDYASRFFDLMP-----VRNVYSWNSMISGYAR------------HGHGDKALTLFSQMKLDGPLPD 661 (934)
Q Consensus 599 ~~~li~~y~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~------------~g~~~~A~~l~~~m~~~g~~p~ 661 (934)
.+.+.+.|.+...+..|.+-|..+. .+|..+.-+|.+.|.+ .+..++|+++|.+.++.. +-|
T Consensus 567 rsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN 645 (1018)
T KOG2002|consen 567 RSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKN 645 (1018)
T ss_pred HHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cch
Confidence 6667778888888888888555443 2344444444444432 345788999999998853 334
Q ss_pred hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhC----CCCCCHHHHHHHH
Q 046194 662 HVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKM----PITPNSLIWRTVL 737 (934)
Q Consensus 662 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m----~~~p~~~~~~~ll 737 (934)
...-+.+...+++.|.+.+|..+|.+..+. ..-...+|-.+..+|..+|++-.|+++|+.. .-+.+..+.+.|.
T Consensus 646 ~yAANGIgiVLA~kg~~~~A~dIFsqVrEa--~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~La 723 (1018)
T KOG2002|consen 646 MYAANGIGIVLAEKGRFSEARDIFSQVREA--TSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLA 723 (1018)
T ss_pred hhhccchhhhhhhccCchHHHHHHHHHHHH--HhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHH
Confidence 566667777789999999999999999885 3345678889999999999999999999876 3345788899999
Q ss_pred HHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHc
Q 046194 738 GACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYAS 778 (934)
Q Consensus 738 ~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~ 778 (934)
.++... |.+.++..++..+..+.|.|+..-..++-+..+
T Consensus 724 ra~y~~--~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kk 762 (1018)
T KOG2002|consen 724 RAWYEA--GKLQEAKEALLKARHLAPSNTSVKFNLALVLKK 762 (1018)
T ss_pred HHHHHh--hhHHHHHHHHHHHHHhCCccchHHhHHHHHHHH
Confidence 999999 999999999999999999999877766665443
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.3e-13 Score=148.92 Aligned_cols=81 Identities=11% Similarity=0.122 Sum_probs=48.9
Q ss_pred CCchhHHHHHHHHhhccCChhHHHHHHhcCCCCC----c-ccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHH
Q 046194 288 FDMVAVGNGLVNMYAKCGTIDDSRSVFRFMIGKD----S-VSWNTMISGLDQNGCYEEAIMNFCAMRRDGLMSSNFSLIS 362 (934)
Q Consensus 288 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~----~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 362 (934)
.+++.++..+++.-.-.|+++-|..++.+|.++. . .-|-.++. .++...+..+++-|++.|+.|+..|+..
T Consensus 201 ~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g----~~~~q~~e~vlrgmqe~gv~p~seT~ad 276 (1088)
T KOG4318|consen 201 APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG----INAAQVFEFVLRGMQEKGVQPGSETQAD 276 (1088)
T ss_pred CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc----CccchHHHHHHHHHHHhcCCCCcchhHH
Confidence 4666666666666666677777777766665542 2 22333322 5566666666666666677777777666
Q ss_pred HHHHhhccCc
Q 046194 363 TLSSCASLGW 372 (934)
Q Consensus 363 ll~a~~~~~~ 372 (934)
-+-.|.+.|.
T Consensus 277 yvip~l~N~~ 286 (1088)
T KOG4318|consen 277 YVIPQLSNGQ 286 (1088)
T ss_pred HHHhhhcchh
Confidence 6666655443
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.1e-14 Score=165.26 Aligned_cols=327 Identities=10% Similarity=-0.007 Sum_probs=266.0
Q ss_pred CcccHHHHHHHHhccCCchHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccC-C-CcchHHHHHHH
Q 046194 458 NGVTFINILAAASSFSMGKLGHQVHAQVIKYNVANETTIENALLSCYGKCGEMDDCEKIFARMSER-R-DEVSWNSMISG 535 (934)
Q Consensus 458 ~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-p-~~~~~~~li~~ 535 (934)
+......++..+.+.|+.+.|..++..++.....+....+. ++......|++++|...|+++... | +...|..+...
T Consensus 41 ~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~-l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~ 119 (656)
T PRK15174 41 NEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRR-WVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASV 119 (656)
T ss_pred cccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHH-HhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 34456677888899999999999999998877665544444 445666799999999999999774 5 56678888899
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCC-HhHHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHH
Q 046194 536 YIHNELLPKAMNLVWFMMQRGQRLD-HFTFATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDY 614 (934)
Q Consensus 536 ~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~ 614 (934)
+.+.|++++|+..|++.... .|+ ...+..+..++...|+.++|...+..+......+.. .+..+ ..+...|++++
T Consensus 120 l~~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~-a~~~~-~~l~~~g~~~e 195 (656)
T PRK15174 120 LLKSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGD-MIATC-LSFLNKSRLPE 195 (656)
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHH-HHHHH-HHHHHcCCHHH
Confidence 99999999999999999874 454 567778888999999999999999988775443332 33333 34788999999
Q ss_pred HHHHhccCCCCC----cccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhCcHHH----HHHHH
Q 046194 615 ASRFFDLMPVRN----VYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPD-HVTFVGVLSACSHAGLVDE----GFKHF 685 (934)
Q Consensus 615 A~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~----a~~~~ 685 (934)
|...++.+...+ ...+..+...+...|++++|+..|+++.+. .|+ ...+..+...+...|++++ |...|
T Consensus 196 A~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~--~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~ 273 (656)
T PRK15174 196 DHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR--GLDGAALRRSLGLAYYQSGRSREAKLQAAEHW 273 (656)
T ss_pred HHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCchhhHHHHHHHH
Confidence 999999876432 233445567888999999999999999985 455 5567778888999999986 89999
Q ss_pred HHhHHhhCCCCC-cccHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcC
Q 046194 686 KSMSQVYGLIPQ-LEQFSCMVDLLGRAGELDKIEEFINKM-PITPN-SLIWRTVLGACCRANCRKTELGRKAANMLFEME 762 (934)
Q Consensus 686 ~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~ 762 (934)
+...+ +.|+ ...+..+...|.+.|++++|...+++. ...|+ ..++..+...+... |+.+.|...++++.+.+
T Consensus 274 ~~Al~---l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~--G~~~eA~~~l~~al~~~ 348 (656)
T PRK15174 274 RHALQ---FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQV--GQYTAASDEFVQLAREK 348 (656)
T ss_pred HHHHh---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHhC
Confidence 99876 4565 778899999999999999999999987 55665 55677788888888 99999999999999999
Q ss_pred CCCCchHHHHHHHHHcCCChHHHHHHHHHHHhCC
Q 046194 763 PQNAVNYVLLANMYASGGKWEDVAKARKAMKEAE 796 (934)
Q Consensus 763 p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~ 796 (934)
|+++..+..++.+|...|++++|.+.++...+..
T Consensus 349 P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 349 GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 9988777788999999999999999998876543
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.5e-13 Score=159.42 Aligned_cols=248 Identities=10% Similarity=0.029 Sum_probs=149.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HhHHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHH
Q 046194 528 SWNSMISGYIHNELLPKAMNLVWFMMQRGQRLD-HFTFATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVDMY 606 (934)
Q Consensus 528 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y 606 (934)
.|+.+...+...|++++|+..|++.... .|+ ...|..+...+...|++++|...++.+++.. +.+..++..+...|
T Consensus 333 a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~ 409 (615)
T TIGR00990 333 ALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLH 409 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 3444444444455555555555554432 232 2344444444445555555555555544432 12455566666677
Q ss_pred HhcCCHHHHHHHhccCCC--C-CcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhCcHHHHH
Q 046194 607 SKCGRIDYASRFFDLMPV--R-NVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPD-HVTFVGVLSACSHAGLVDEGF 682 (934)
Q Consensus 607 ~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~ 682 (934)
...|++++|...|+.... | +...|..+...+.+.|++++|+..|++..+. .|+ ...+..+...+...|++++|+
T Consensus 410 ~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~ 487 (615)
T TIGR00990 410 FIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAI 487 (615)
T ss_pred HHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHH
Confidence 777777777777776542 2 3445666777777788888888888887763 454 456677777788888888888
Q ss_pred HHHHHhHHhhCCCCCc-cc-------HHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhccCCCcHHHH
Q 046194 683 KHFKSMSQVYGLIPQL-EQ-------FSCMVDLLGRAGELDKIEEFINKM-PITPN-SLIWRTVLGACCRANCRKTELGR 752 (934)
Q Consensus 683 ~~~~~m~~~~~~~p~~-~~-------y~~li~~l~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~~~a~ 752 (934)
+.|+...+ +.|+. .. ++.....+...|++++|.+++++. .+.|+ ...+..+...+... |++++|.
T Consensus 488 ~~~~~Al~---l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~--g~~~eAi 562 (615)
T TIGR00990 488 EKFDTAIE---LEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQ--GDVDEAL 562 (615)
T ss_pred HHHHHHHh---cCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc--cCHHHHH
Confidence 88887765 33331 11 111122333468888888888875 55554 44677788888888 8888888
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHH
Q 046194 753 KAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMK 793 (934)
Q Consensus 753 ~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~ 793 (934)
..++++.++.+.....+ ....|.+|.++....+
T Consensus 563 ~~~e~A~~l~~~~~e~~--------~a~~~~~a~~~~~~~~ 595 (615)
T TIGR00990 563 KLFERAAELARTEGELV--------QAISYAEATRTQIQVQ 595 (615)
T ss_pred HHHHHHHHHhccHHHHH--------HHHHHHHHHHHHHHHH
Confidence 88888888877643322 1223556666544444
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=7.6e-13 Score=154.62 Aligned_cols=433 Identities=8% Similarity=0.016 Sum_probs=256.2
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCCChh-hHHHHHHHhhccCchHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhcCChH
Q 046194 331 GLDQNGCYEEAIMNFCAMRRDGLMSSNF-SLISTLSSCASLGWIMLGQQIHGEGLKLGLDSDVSVSNALLSLYADAGYLS 409 (934)
Q Consensus 331 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~ 409 (934)
...++|+++.|++.|++..+. .|+.. ....++..+...|+.++|...++..+. .-+.......++...|...|+++
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~-p~n~~~~~llalA~ly~~~gdyd 119 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKA--GPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQS-SMNISSRGLASAARAYRNEKRWD 119 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhh--CccchhhHHHHHHHHHHcCCcHHHHHHHHHhcc-CCCCCHHHHHHHHHHHHHcCCHH
Confidence 357889999999999999873 45542 222566666666777777777777661 11122223333355666777777
Q ss_pred HHHHHHhhCCCC---CccchHHHHHHHHhCCccHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhccCCchHHHHHHHHHH
Q 046194 410 RCLKVFFLMPEH---DQVSWNSVIGAFADSEALVSEAVKYYLDMRRAGWSPNGVTFINILAAASSFSMGKLGHQVHAQVI 486 (934)
Q Consensus 410 ~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~ 486 (934)
+|..+|+++.+. |...+..++..|.+.++. ++|++.++++... .|+...+..+.......++...+.+.++.++
T Consensus 120 ~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~-~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll 196 (822)
T PRK14574 120 QALALWQSSLKKDPTNPDLISGMIMTQADAGRG-GVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAV 196 (822)
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCH-HHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 777777776542 344555666667777777 7777777776543 3444444333333333344434556666655
Q ss_pred HhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHH
Q 046194 487 KYNVANETTIENALLSCYGKCGEMDDCEKIFARMSERRDEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFAT 566 (934)
Q Consensus 487 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 566 (934)
+.. +.+...+..++....+.|-...|.++..+-+.--+...+.-+- .+.| -++++.+..|+.
T Consensus 197 ~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~--------~~~~----a~~vr~a~~~~~----- 258 (822)
T PRK14574 197 RLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLE--------RDAA----AEQVRMAVLPTR----- 258 (822)
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHH--------HHHH----HHHHhhcccccc-----
Confidence 553 3344444555555566666655555544433210111110000 0000 011111111100
Q ss_pred HHHHHhchh---hHHHHHHHHHHHHHh-CCCC-cHhH-HHH---HHHHHHhcCCHHHHHHHhccCCCCC--cc--cccHH
Q 046194 567 VLSACASVA---TLERGMEVHACGVRA-CLEF-DVVI-GSA---LVDMYSKCGRIDYASRFFDLMPVRN--VY--SWNSM 633 (934)
Q Consensus 567 ll~a~~~~~---~~~~a~~i~~~~~~~-~~~~-~~~~-~~~---li~~y~~~g~~~~A~~~~~~~~~~~--~~--~~~~l 633 (934)
.... -.+.|..-++.+... +-.| .... ..+ .+-++.+.|++.++++.|+.+..+. +. +-..+
T Consensus 259 -----~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~ 333 (822)
T PRK14574 259 -----SETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWA 333 (822)
T ss_pred -----cchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHH
Confidence 0011 123333334433331 1112 1111 222 3335567788888888888887432 22 34457
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCC----CC-ChhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhC----------CCCC-
Q 046194 634 ISGYARHGHGDKALTLFSQMKLDGP----LP-DHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYG----------LIPQ- 697 (934)
Q Consensus 634 i~~~~~~g~~~~A~~l~~~m~~~g~----~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~----------~~p~- 697 (934)
..+|...+++++|+.+|+++....- .| +......|.-++...+++++|..+++.+.+... -.|+
T Consensus 334 adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~ 413 (822)
T PRK14574 334 ASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPND 413 (822)
T ss_pred HHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCc
Confidence 7788888888888888888765421 12 222245677788888888888888888876211 0122
Q ss_pred --cccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHH
Q 046194 698 --LEQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLA 773 (934)
Q Consensus 698 --~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~ 773 (934)
...+..++..+.-.|++.+|++.++++ ...| |..++..+...++.. |+...|+..++.+..++|++...+..++
T Consensus 414 d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~R--g~p~~A~~~~k~a~~l~P~~~~~~~~~~ 491 (822)
T PRK14574 414 DWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLAR--DLPRKAEQELKAVESLAPRSLILERAQA 491 (822)
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHhhhCCccHHHHHHHH
Confidence 334555677788888889988888888 3444 677788888888888 8888888888888888888888888888
Q ss_pred HHHHcCCChHHHHHHHHHHHh
Q 046194 774 NMYASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 774 ~~~~~~g~~~~a~~~~~~m~~ 794 (934)
..+...|+|.+|.++.+.+.+
T Consensus 492 ~~al~l~e~~~A~~~~~~l~~ 512 (822)
T PRK14574 492 ETAMALQEWHQMELLTDDVIS 512 (822)
T ss_pred HHHHhhhhHHHHHHHHHHHHh
Confidence 888888999888888766654
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=7.2e-12 Score=146.54 Aligned_cols=438 Identities=11% Similarity=0.040 Sum_probs=283.1
Q ss_pred HhhccCChhHHHHHHhcCCCCCcc---cHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHH---HHHhhccCch
Q 046194 300 MYAKCGTIDDSRSVFRFMIGKDSV---SWNTMISGLDQNGCYEEAIMNFCAMRRDGLMSSNFSLIST---LSSCASLGWI 373 (934)
Q Consensus 300 ~~~~~g~~~~A~~~f~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l---l~a~~~~~~~ 373 (934)
...+.|+++.|+..|++..+.+.. ....++..+...|+.++|+..+++.. .|+...+..+ ...+...|++
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~~gdy 118 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRNEKRW 118 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCCH
Confidence 466899999999999998764333 23488888889999999999999987 4544444333 3466678999
Q ss_pred HHHHHHHHHHhhhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCccchHHHHHHHHh--CCccHHHHHHHHHHHH
Q 046194 374 MLGQQIHGEGLKLGLDSDVSVSNALLSLYADAGYLSRCLKVFFLMPEHDQVSWNSVIGAFAD--SEALVSEAVKYYLDMR 451 (934)
Q Consensus 374 ~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~--~g~~~~~A~~l~~~m~ 451 (934)
+.|.++++.+++.... +..++..++..|...++.++|+..++++...+......+..+|.. .++. .+|++.++++.
T Consensus 119 d~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~-~~AL~~~ekll 196 (822)
T PRK14574 119 DQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRN-YDALQASSEAV 196 (822)
T ss_pred HHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchH-HHHHHHHHHHH
Confidence 9999999999987643 356677889999999999999999999987544433334445544 4555 57999999999
Q ss_pred HcCCCCC-cccHHHHHHHHhccCCchHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccCCCcchHH
Q 046194 452 RAGWSPN-GVTFINILAAASSFSMGKLGHQVHAQVIKYNVANETTIENALLSCYGKCGEMDDCEKIFARMSERRDEVSWN 530 (934)
Q Consensus 452 ~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~ 530 (934)
+. .|+ ...+..+..+..+.|-...|.++...-... +.+....+ ++ .+.|.+....-...+...
T Consensus 197 ~~--~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~---l~-------~~~~a~~vr~a~~~~~~~--- 260 (822)
T PRK14574 197 RL--APTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQ---LE-------RDAAAEQVRMAVLPTRSE--- 260 (822)
T ss_pred Hh--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHH---HH-------HHHHHHHHhhcccccccc---
Confidence 86 354 455677788888888888888766542110 11111000 00 011111111100000000
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHc-CCCCCH-h----HHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHH
Q 046194 531 SMISGYIHNELLPKAMNLVWFMMQR-GQRLDH-F----TFATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVD 604 (934)
Q Consensus 531 ~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~-~----t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~ 604 (934)
-. +---.+.|+.-++.+... +-.|.. . ...--+-++...++..++.+.++.+...+.+....+--++.+
T Consensus 261 --~~---r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~ad 335 (822)
T PRK14574 261 --TE---RFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAAS 335 (822)
T ss_pred --hh---hHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHH
Confidence 00 000123344444444331 111211 1 111223345555666666666666666555544556666677
Q ss_pred HHHhcCCHHHHHHHhccCCCCC---------cccccHHHHHHHHcCChHHHHHHHHHHHHCC-------------CCCCh
Q 046194 605 MYSKCGRIDYASRFFDLMPVRN---------VYSWNSMISGYARHGHGDKALTLFSQMKLDG-------------PLPDH 662 (934)
Q Consensus 605 ~y~~~g~~~~A~~~~~~~~~~~---------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-------------~~p~~ 662 (934)
+|...+++++|..++..+..++ ......|.-+|...+++++|..+++++.+.- ..||-
T Consensus 336 ayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~ 415 (822)
T PRK14574 336 AYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDW 415 (822)
T ss_pred HHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccH
Confidence 7777777777777776653211 1123456667777777777777777776621 12332
Q ss_pred hh-HHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHH
Q 046194 663 VT-FVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKM-PITPNS-LIWRTVLGA 739 (934)
Q Consensus 663 ~t-~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p~~-~~~~~ll~~ 739 (934)
.. +..++..+...|+..+|++.++.+... -+-|......+.+++...|+..+|++.++.. ...|+. .+...+..+
T Consensus 416 ~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~--aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~ 493 (822)
T PRK14574 416 IEGQTLLVQSLVALNDLPTAQKKLEDLSST--APANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAET 493 (822)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHH
Confidence 22 344556688999999999999999763 4455888999999999999999999999776 567764 455566666
Q ss_pred HHhccCCCcHHHHHHHHHHHhcCCCCCch
Q 046194 740 CCRANCRKTELGRKAANMLFEMEPQNAVN 768 (934)
Q Consensus 740 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 768 (934)
.... +++.+|+...+.+.+..|+++..
T Consensus 494 al~l--~e~~~A~~~~~~l~~~~Pe~~~~ 520 (822)
T PRK14574 494 AMAL--QEWHQMELLTDDVISRSPEDIPS 520 (822)
T ss_pred HHhh--hhHHHHHHHHHHHHhhCCCchhH
Confidence 6666 99999999999999999999754
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.59 E-value=9.2e-10 Score=117.27 Aligned_cols=462 Identities=12% Similarity=0.080 Sum_probs=331.2
Q ss_pred HHhhccCChhHHHHHHhcCCC---CCcccHHHHHHHHHhCCChhHHHHHHHH----HHHCCCCCChhhHHHHHHHhhccC
Q 046194 299 NMYAKCGTIDDSRSVFRFMIG---KDSVSWNTMISGLDQNGCYEEAIMNFCA----MRRDGLMSSNFSLISTLSSCASLG 371 (934)
Q Consensus 299 ~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~----m~~~g~~p~~~t~~~ll~a~~~~~ 371 (934)
-+|++..-++.|.++++...+ .+...|-+-...=-.+|+.+....+..+ +...|+..+...|..=..+|-..|
T Consensus 414 lAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ag 493 (913)
T KOG0495|consen 414 LALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAG 493 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcC
Confidence 455666677888888776643 4777887777767788888887777654 566788888888888888888888
Q ss_pred chHHHHHHHHHHhhhCCCCc--hhHHHHHHHHHHhcCChHHHHHHHhhCCC---CCccchHHHHHHHHhCCccHHHHHHH
Q 046194 372 WIMLGQQIHGEGLKLGLDSD--VSVSNALLSLYADAGYLSRCLKVFFLMPE---HDQVSWNSVIGAFADSEALVSEAVKY 446 (934)
Q Consensus 372 ~~~~a~~i~~~~~~~g~~~~--~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~~A~~l 446 (934)
..-....|....+..|++.. ..++..-.+.+.+.+.++-|..+|....+ .+...|...+..--..|.. ++...+
T Consensus 494 sv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~-Esl~Al 572 (913)
T KOG0495|consen 494 SVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTR-ESLEAL 572 (913)
T ss_pred ChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcH-HHHHHH
Confidence 88888888888877776543 34666666777777777777777765543 2444555555444444555 555555
Q ss_pred HHHHHHcCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccC-C-
Q 046194 447 YLDMRRAGWSPNGVTFINILAAASSFSMGKLGHQVHAQVIKYNVANETTIENALLSCYGKCGEMDDCEKIFARMSER-R- 524 (934)
Q Consensus 447 ~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-p- 524 (934)
|++.... - +-....|-....-+-..|++..|+.++++.-+. |
T Consensus 573 lqkav~~-----------------------------------~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn 616 (913)
T KOG0495|consen 573 LQKAVEQ-----------------------------------C-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN 616 (913)
T ss_pred HHHHHHh-----------------------------------C-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC
Confidence 5555543 1 112223333444555677777777777776553 3
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHH
Q 046194 525 DEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVD 604 (934)
Q Consensus 525 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~ 604 (934)
+...|-+-+..-..+..+++|..+|.+... ..|+...|.--+..---++..++|+++++..++. ++.-...|..+..
T Consensus 617 seeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQ 693 (913)
T KOG0495|consen 617 SEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQ 693 (913)
T ss_pred cHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhH
Confidence 455677777777788888888888877765 4566666655555555677788888888777764 3334566777788
Q ss_pred HHHhcCCHHHHHHHhccCCC--CC-cccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHH
Q 046194 605 MYSKCGRIDYASRFFDLMPV--RN-VYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEG 681 (934)
Q Consensus 605 ~y~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 681 (934)
.+-..++++.|...|..-.+ |+ +..|-.|...--+.|+.-+|..+|++..-++ +-|...|...|..=.+.|..+.|
T Consensus 694 i~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a 772 (913)
T KOG0495|consen 694 IEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQA 772 (913)
T ss_pred HHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHH
Confidence 88888888888888876553 44 3477777777778888999999999888764 33467788888888899999999
Q ss_pred HHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhc
Q 046194 682 FKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKMPITPNSLIWRTVLGACCRANCRKTELGRKAANMLFEM 761 (934)
Q Consensus 682 ~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~ 761 (934)
..+..+..++ .+.+...|.--|.+..+.++-..+.+.+++.. .|+.+.-+....+... ..++.|..-++++.+.
T Consensus 773 ~~lmakALQe--cp~sg~LWaEaI~le~~~~rkTks~DALkkce--~dphVllaia~lfw~e--~k~~kar~Wf~Ravk~ 846 (913)
T KOG0495|consen 773 ELLMAKALQE--CPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE--HDPHVLLAIAKLFWSE--KKIEKAREWFERAVKK 846 (913)
T ss_pred HHHHHHHHHh--CCccchhHHHHHHhccCcccchHHHHHHHhcc--CCchhHHHHHHHHHHH--HHHHHHHHHHHHHHcc
Confidence 9888888774 55557778888888888888777777777764 4455555666666666 7889999999999999
Q ss_pred CCCCCchHHHHHHHHHcCCChHHHHHHHHHHHhCCCcCCCceeEEEeC
Q 046194 762 EPQNAVNYVLLANMYASGGKWEDVAKARKAMKEAEVKKEAGCSWVTMK 809 (934)
Q Consensus 762 ~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ 809 (934)
+|++...+..+-.-+...|.-++-.++++..... .|.-|..|+.+.
T Consensus 847 d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~--EP~hG~~W~avS 892 (913)
T KOG0495|consen 847 DPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA--EPTHGELWQAVS 892 (913)
T ss_pred CCccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCCCcHHHHHh
Confidence 9999999999999999999988888888877653 345566676553
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.5e-10 Score=128.42 Aligned_cols=518 Identities=12% Similarity=0.096 Sum_probs=346.2
Q ss_pred hcCChHHHHHHHHHhhhcccchhhhhhhhhhhhhHHHHHHHHHcCCCchhHHHHHHHHhhccCChhHHHHHHhcC---CC
Q 046194 243 RLGNFYYARKIFEQMIQKNVVSMNGLMEGRRKGKEVHGYLIRSGLFDMVAVGNGLVNMYAKCGTIDDSRSVFRFM---IG 319 (934)
Q Consensus 243 ~~g~~~~A~~l~~~m~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~---~~ 319 (934)
..|++++|++++.++...|+ .+...|.+|-..|-..|+++++...+-.. .+
T Consensus 151 arg~~eeA~~i~~EvIkqdp--------------------------~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p 204 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQDP--------------------------RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNP 204 (895)
T ss_pred HhCCHHHHHHHHHHHHHhCc--------------------------cchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCC
Confidence 34999999999999877653 23445667777888888888887766433 33
Q ss_pred CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCh-hhHHHHHHHhhccCchHHHHHHHHHHhhhCCCCchhHHHH-
Q 046194 320 KDSVSWNTMISGLDQNGCYEEAIMNFCAMRRDGLMSSN-FSLISTLSSCASLGWIMLGQQIHGEGLKLGLDSDVSVSNA- 397 (934)
Q Consensus 320 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~- 397 (934)
.|..-|-.+-.-..+.|.+++|.-.|.+..+. .|+. ..+--=...|-+.|+...|..-+..+.....+.|..-...
T Consensus 205 ~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~--~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~ 282 (895)
T KOG2076|consen 205 KDYELWKRLADLSEQLGNINQARYCYSRAIQA--NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDL 282 (895)
T ss_pred CChHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHH
Confidence 46677888888788888888888888888764 3333 3333344556677888888887777777654333333333
Q ss_pred ---HHHHHHhcCChHHHHHHHhhCCC--C---CccchHHHHHHHHhCCccHHHHHHHHHHHHHcCCCC------------
Q 046194 398 ---LLSLYADAGYLSRCLKVFFLMPE--H---DQVSWNSVIGAFADSEALVSEAVKYYLDMRRAGWSP------------ 457 (934)
Q Consensus 398 ---li~~y~~~g~~~~A~~~f~~~~~--~---~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p------------ 457 (934)
.+..|...++-+.|.+.++.... . +....|.++..|.+...+ +.|......+......+
T Consensus 283 i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~-d~~~~~i~~~~~r~~e~d~~e~~~~~~~~ 361 (895)
T KOG2076|consen 283 IRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQS-DKALMKIVDDRNRESEKDDSEWDTDERRR 361 (895)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHH-HHhhHHHHHHhccccCCChhhhhhhhhcc
Confidence 34556666777888887776654 2 344677888888888888 88888888877621111
Q ss_pred ----------CcccH----HHHHHHHhccCCchHHHHHHHHHHHhc--CCCchhHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 046194 458 ----------NGVTF----INILAAASSFSMGKLGHQVHAQVIKYN--VANETTIENALLSCYGKCGEMDDCEKIFARMS 521 (934)
Q Consensus 458 ----------~~~t~----~~ll~a~~~~~~~~~a~~i~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 521 (934)
+...| .-++-+..+....+....+...+.+.. +..+...+.-+.++|...|++.+|.++|..+.
T Consensus 362 ~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~ 441 (895)
T KOG2076|consen 362 EEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPIT 441 (895)
T ss_pred ccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHh
Confidence 11111 123334456666777777777777777 44456788899999999999999999999998
Q ss_pred cCC---CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH-hHHHHHHHHHhchhhHHHHHHHHHHH--------HH
Q 046194 522 ERR---DEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDH-FTFATVLSACASVATLERGMEVHACG--------VR 589 (934)
Q Consensus 522 ~~p---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~a~~i~~~~--------~~ 589 (934)
..| +...|--+..+|...|.+++|.+.|...+.. .|+. -.-.++-..+.+.|+.++|.+.+..+ ..
T Consensus 442 ~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~ 519 (895)
T KOG2076|consen 442 NREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEA 519 (895)
T ss_pred cCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhh
Confidence 863 6778999999999999999999999999874 4543 34445555677899999999998884 33
Q ss_pred hCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCC---------C-----------------CcccccHHHHHHHHcCCh
Q 046194 590 ACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPV---------R-----------------NVYSWNSMISGYARHGHG 643 (934)
Q Consensus 590 ~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---------~-----------------~~~~~~~li~~~~~~g~~ 643 (934)
.+..|+....--..+.|.+.|+.++=..+-..|.. | +...--.++.+-.+.++.
T Consensus 520 ~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~ 599 (895)
T KOG2076|consen 520 CAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDD 599 (895)
T ss_pred ccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCch
Confidence 45666777777788889999998774444333321 0 111122233333333332
Q ss_pred HHHHHH------HHHHHHCCCCCCh--hhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcc----cHHHHHHHHhhc
Q 046194 644 DKALTL------FSQMKLDGPLPDH--VTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLE----QFSCMVDLLGRA 711 (934)
Q Consensus 644 ~~A~~l------~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~----~y~~li~~l~~~ 711 (934)
....+- +.--...|+.-+. ..|.-++.++.+.+.+++|..+...+...+-+.-+.. .-.+++.+....
T Consensus 600 ~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~ 679 (895)
T KOG2076|consen 600 NVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYA 679 (895)
T ss_pred HHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhc
Confidence 221111 1111122233332 2355666778889999999999888877544333322 334566677788
Q ss_pred CChHHHHHHHHhC----C--CCCC-HHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCC-CchHHHHHHHHHcCCChH
Q 046194 712 GELDKIEEFINKM----P--ITPN-SLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQN-AVNYVLLANMYASGGKWE 783 (934)
Q Consensus 712 g~~~~A~~~~~~m----~--~~p~-~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~-~~~y~~l~~~~~~~g~~~ 783 (934)
+++.+|.+.++.| + ..|. ...|+..++....+ ++-.--.+....+....|++ +..+...+..+...+.|.
T Consensus 680 ~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~--~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~ 757 (895)
T KOG2076|consen 680 RDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKY--GQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFK 757 (895)
T ss_pred CCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchH
Confidence 9999999988887 1 1333 33577666677777 66666666666777777777 666777888888899999
Q ss_pred HHHHHHHHHH
Q 046194 784 DVAKARKAMK 793 (934)
Q Consensus 784 ~a~~~~~~m~ 793 (934)
.|...+-..-
T Consensus 758 ~Al~~y~ra~ 767 (895)
T KOG2076|consen 758 HALQEYMRAF 767 (895)
T ss_pred HHHHHHHHHH
Confidence 9988655443
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.55 E-value=9.7e-10 Score=122.07 Aligned_cols=613 Identities=12% Similarity=0.123 Sum_probs=391.1
Q ss_pred CChHHHHHHhhccCC---CCcccHHHHHHHHHcCCCchHHHHHHHHHHHccCCCCCCCCceeHHHHHHHHhcCccccchH
Q 046194 138 ESTDCARRIFEEIET---RDLISWNSIISVYSQRGDTISVFKLFSRMQREGFRYSLKPNEYTFGSLITAAYSSVLSGSYL 214 (934)
Q Consensus 138 g~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~p~~~t~~~ll~a~~~~~~~~~~~ 214 (934)
|+.+.|.+++.++.+ ++...|-+|-..|-+.|+.++++..+-..-... +-|.--|..+-.-....|.+..
T Consensus 153 g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-----p~d~e~W~~ladls~~~~~i~q-- 225 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-----PKDYELWKRLADLSEQLGNINQ-- 225 (895)
T ss_pred CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-----CCChHHHHHHHHHHHhcccHHH--
Confidence 999999999988875 355679999999999999999987765443332 2344556666666667777777
Q ss_pred HHHHHHHHHHhCCCCCccchhHHHHHHHhcCChHHHHHHHHHhhhccc-chhhhhhhhhhhhhHHHHHHHHHcCCCchhH
Q 046194 215 LQQILAMVKKAGLLSDLYVGSALVSGFARLGNFYYARKIFEQMIQKNV-VSMNGLMEGRRKGKEVHGYLIRSGLFDMVAV 293 (934)
Q Consensus 215 a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~-~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~ 293 (934)
|.-.+....+.. +++...+-.-...|-+.|+...|..-|.++.+.++ +.|. .+++.+
T Consensus 226 A~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~e----------r~~d~i----------- 283 (895)
T KOG2076|consen 226 ARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIE----------RIEDLI----------- 283 (895)
T ss_pred HHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHH----------HHHHHH-----------
Confidence 777777777765 34455556677888899999999998888876543 2221 122111
Q ss_pred HHHHHHHhhccCChhHHHHHHhcCCC--C---CcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhh---------
Q 046194 294 GNGLVNMYAKCGTIDDSRSVFRFMIG--K---DSVSWNTMISGLDQNGCYEEAIMNFCAMRRDGLMSSNFS--------- 359 (934)
Q Consensus 294 ~~~li~~~~~~g~~~~A~~~f~~~~~--~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--------- 359 (934)
-..+..|...++-+.|.+.++.... . +...+|.++..|.....++.|+.....+......+|..-
T Consensus 284 -~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~ 362 (895)
T KOG2076|consen 284 -RRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRRE 362 (895)
T ss_pred -HHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccc
Confidence 1223455556666777777766644 2 445688888999999999999988888876222222211
Q ss_pred -------------H----HHHHHHhhccCchHHHHHHHHHHhhhC--CCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC
Q 046194 360 -------------L----ISTLSSCASLGWIMLGQQIHGEGLKLG--LDSDVSVSNALLSLYADAGYLSRCLKVFFLMPE 420 (934)
Q Consensus 360 -------------~----~~ll~a~~~~~~~~~a~~i~~~~~~~g--~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~ 420 (934)
| .-+.-+..+....+....+...+.+.. +.-++..+.-+.++|...|++.+|..+|..+..
T Consensus 363 ~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~ 442 (895)
T KOG2076|consen 363 EPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITN 442 (895)
T ss_pred cccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhc
Confidence 1 122334456666677777777777777 444667888999999999999999999999875
Q ss_pred ----CCccchHHHHHHHHhCCccHHHHHHHHHHHHHcCCCCCcc-cHHHHHHHHhccCCchHHHHHHHHHH--------H
Q 046194 421 ----HDQVSWNSVIGAFADSEALVSEAVKYYLDMRRAGWSPNGV-TFINILAAASSFSMGKLGHQVHAQVI--------K 487 (934)
Q Consensus 421 ----~~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~~~~~~a~~i~~~~~--------~ 487 (934)
.+...|--+...|...|.. ++|++.|...+.. .|+.. .-.+|-..+...|+.++|.+.+..+. .
T Consensus 443 ~~~~~~~~vw~~~a~c~~~l~e~-e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~ 519 (895)
T KOG2076|consen 443 REGYQNAFVWYKLARCYMELGEY-EEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEA 519 (895)
T ss_pred CccccchhhhHHHHHHHHHHhhH-HHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhh
Confidence 3667899999999999999 9999999998864 34433 23345556678899999999888743 2
Q ss_pred hcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccC--------C-----------------CcchHHHHHHHHHhcCCh
Q 046194 488 YNVANETTIENALLSCYGKCGEMDDCEKIFARMSER--------R-----------------DEVSWNSMISGYIHNELL 542 (934)
Q Consensus 488 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------p-----------------~~~~~~~li~~~~~~g~~ 542 (934)
.+..|+..+.--..+.|.+.|+.++-..+-..|... | ....--.++.+-.+.++.
T Consensus 520 ~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~ 599 (895)
T KOG2076|consen 520 CAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDD 599 (895)
T ss_pred ccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCch
Confidence 344566666666778888888877644433333220 0 111222233333333332
Q ss_pred hHHH------HHHHHHHHcCCCCCH--hHHHHHHHHHhchhhHHHHHHHHHHHHHhC-C-CCcH---hHHHHHHHHHHhc
Q 046194 543 PKAM------NLVWFMMQRGQRLDH--FTFATVLSACASVATLERGMEVHACGVRAC-L-EFDV---VIGSALVDMYSKC 609 (934)
Q Consensus 543 ~~A~------~l~~~m~~~g~~p~~--~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~-~-~~~~---~~~~~li~~y~~~ 609 (934)
.... ..+.--...|+.-+. ..+.-++.+.++.++.++|..+...+.... + .++. ..-...+.+....
T Consensus 600 ~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~ 679 (895)
T KOG2076|consen 600 NVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYA 679 (895)
T ss_pred HHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhc
Confidence 1111 111111222333333 234556667788888888888887776542 1 2221 2234455556677
Q ss_pred CCHHHHHHHhccCCCC-----Cc---ccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHH--HHhhCcHH
Q 046194 610 GRIDYASRFFDLMPVR-----NV---YSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSA--CSHAGLVD 679 (934)
Q Consensus 610 g~~~~A~~~~~~~~~~-----~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a--~~~~g~~~ 679 (934)
+++..|...+..|... ++ ..||...+.+.+.|+-.--.+++..... .+|+..-...++.+ ....+.+.
T Consensus 680 ~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~--~~~~~~~~l~~i~gh~~~~~~s~~ 757 (895)
T KOG2076|consen 680 RDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLV--KNKDDTPPLALIYGHNLFVNASFK 757 (895)
T ss_pred CCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCccCCcceeeeechhHhhccchH
Confidence 8888888888777643 32 3677766776666665444444444433 23333222222222 34567788
Q ss_pred HHHHHHHHhHHhhCCCCCcccHH-HHHHHHh----------hcCChHHHHHHHHhC-CC-CC--CHHHHHHHHHHHHhcc
Q 046194 680 EGFKHFKSMSQVYGLIPQLEQFS-CMVDLLG----------RAGELDKIEEFINKM-PI-TP--NSLIWRTVLGACCRAN 744 (934)
Q Consensus 680 ~a~~~~~~m~~~~~~~p~~~~y~-~li~~l~----------~~g~~~~A~~~~~~m-~~-~p--~~~~~~~ll~~~~~~~ 744 (934)
.|++.+-.... ..|+...++ ||.-++. |.-.+-.+..++++. .. .+ ...++-.+..+|...
T Consensus 758 ~Al~~y~ra~~---~~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~- 833 (895)
T KOG2076|consen 758 HALQEYMRAFR---QNPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQI- 833 (895)
T ss_pred HHHHHHHHHHH---hCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHc-
Confidence 88887665543 567744333 3333332 112234455666544 11 12 455778899999999
Q ss_pred CCCcHHHHHHHHHHHhcCCCCCc------------hHHHHHHHHHcCCChHHHHHHHH
Q 046194 745 CRKTELGRKAANMLFEMEPQNAV------------NYVLLANMYASGGKWEDVAKARK 790 (934)
Q Consensus 745 ~~~~~~a~~~~~~~~~~~p~~~~------------~y~~l~~~~~~~g~~~~a~~~~~ 790 (934)
|-+-.|...++++++..|.+.. +-..|.-+|-..|+..-|.++.+
T Consensus 834 -gl~~LA~~YYekvL~~~p~~~~~~~~d~~dLrkeAA~NL~LIY~~SGn~~lArqil~ 890 (895)
T KOG2076|consen 834 -GLVHLAVSYYEKVLEVSPKDVTDPKEDNYDLRKEAAYNLHLIYKKSGNMQLARQILE 890 (895)
T ss_pred -ccHHHHHHHHHHHhCCCccccccccCCcccHHHHHHhhhhhhhccCCcHHHHHHHHH
Confidence 9999999999999999865321 24467789999999999988754
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.49 E-value=7.3e-09 Score=110.61 Aligned_cols=423 Identities=10% Similarity=0.045 Sum_probs=322.3
Q ss_pred hHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCchHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhC
Q 046194 339 EEAIMNFCAMRRDGLMSSNFSLISTLSSCASLGWIMLGQQIHGEGLKLGLDSDVSVSNALLSLYADAGYLSRCLKVFFLM 418 (934)
Q Consensus 339 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~ 418 (934)
..=.+++++.++. .|+.+. +=++.....+.+.|+.++..+++. ++.+...+. +|++..-++.|.++++..
T Consensus 363 ~~K~RVlRKALe~--iP~sv~---LWKaAVelE~~~darilL~rAvec-cp~s~dLwl----AlarLetYenAkkvLNka 432 (913)
T KOG0495|consen 363 KNKKRVLRKALEH--IPRSVR---LWKAAVELEEPEDARILLERAVEC-CPQSMDLWL----ALARLETYENAKKVLNKA 432 (913)
T ss_pred HHHHHHHHHHHHh--CCchHH---HHHHHHhccChHHHHHHHHHHHHh-ccchHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 3334555555552 444432 334455566666788888887775 233444444 456666778888888776
Q ss_pred CC---CCccchHHHHHHHHhCCccHHHHHHHHHH----HHHcCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhcCC
Q 046194 419 PE---HDQVSWNSVIGAFADSEALVSEAVKYYLD----MRRAGWSPNGVTFINILAAASSFSMGKLGHQVHAQVIKYNVA 491 (934)
Q Consensus 419 ~~---~~~~~~~~li~~~~~~g~~~~~A~~l~~~----m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~ 491 (934)
.+ .+...|-+-...--.+|+. +...+++.+ +...|+..+...|..=..+|-..|.+-.+..|...++..|++
T Consensus 433 Re~iptd~~IWitaa~LEE~ngn~-~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvE 511 (913)
T KOG0495|consen 433 REIIPTDREIWITAAKLEEANGNV-DMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVE 511 (913)
T ss_pred HhhCCCChhHHHHHHHHHHhcCCH-HHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccc
Confidence 54 4777887777666777877 777777654 455789999999988888999999999999999999999887
Q ss_pred Cch--hHHHHHHHHHHhcCCHHHHHHHHHhhccC-C-CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHH
Q 046194 492 NET--TIENALLSCYGKCGEMDDCEKIFARMSER-R-DEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATV 567 (934)
Q Consensus 492 ~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~-p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 567 (934)
... .+|..-.+.|.+.+.++-|+.+|....+- | +...|...+..--..|..++-..+|++.... ++-....+...
T Consensus 512 eed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ 590 (913)
T KOG0495|consen 512 EEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMY 590 (913)
T ss_pred cchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHH
Confidence 644 57777888899999999999999887764 3 6778988888888899999999999999886 34455666666
Q ss_pred HHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCC--CCCcccccHHHHHHHHcCChHH
Q 046194 568 LSACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMP--VRNVYSWNSMISGYARHGHGDK 645 (934)
Q Consensus 568 l~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~ 645 (934)
..-.-..|++..|+.+++.+.+.... +..++-+-+.......+++.|..+|.+.. .+....|.--+....-.+..++
T Consensus 591 ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~ee 669 (913)
T KOG0495|consen 591 AKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEE 669 (913)
T ss_pred HHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHH
Confidence 66677789999999999999886544 67788888889999999999999998775 4666678777777778899999
Q ss_pred HHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhhcCChHHHHHHHHh
Q 046194 646 ALTLFSQMKLDGPLPD-HVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGRAGELDKIEEFINK 723 (934)
Q Consensus 646 A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~ 723 (934)
|++++++..+ .-|+ ...|..+...+.+.++++.|...|..-.+ .-|+ +..|-.|.++=-+.|.+-.|..++++
T Consensus 670 A~rllEe~lk--~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k---~cP~~ipLWllLakleEk~~~~~rAR~ildr 744 (913)
T KOG0495|consen 670 ALRLLEEALK--SFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTK---KCPNSIPLWLLLAKLEEKDGQLVRARSILDR 744 (913)
T ss_pred HHHHHHHHHH--hCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccc---cCCCCchHHHHHHHHHHHhcchhhHHHHHHH
Confidence 9999999888 4677 55677777778889999999988776654 3354 77888888998999999999999998
Q ss_pred C--CCCCCHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCC
Q 046194 724 M--PITPNSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGK 781 (934)
Q Consensus 724 m--~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~ 781 (934)
. ..+.+...|-..+..=.++ |+.++|+.+..++++--|.+...+.--+++..+.++
T Consensus 745 arlkNPk~~~lwle~Ir~ElR~--gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~r 802 (913)
T KOG0495|consen 745 ARLKNPKNALLWLESIRMELRA--GNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQR 802 (913)
T ss_pred HHhcCCCcchhHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCccchhHHHHHHhccCccc
Confidence 8 3334678899999999999 999999999888888777654444444444443333
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.5e-11 Score=123.12 Aligned_cols=482 Identities=11% Similarity=0.097 Sum_probs=293.0
Q ss_pred cchhHHHHHHHhcCChHHHHHHHHHhhhcccchhhhhhhhhhhhhHHHHHHHHHcCCCchhH-HHHHHHHhhccCChhHH
Q 046194 232 YVGSALVSGFARLGNFYYARKIFEQMIQKNVVSMNGLMEGRRKGKEVHGYLIRSGLFDMVAV-GNGLVNMYAKCGTIDDS 310 (934)
Q Consensus 232 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~-~~~li~~~~~~g~~~~A 310 (934)
.+...|..-|..+....+|+.-++-+...- .-|+.-. --.+-+.|.+...+.+|
T Consensus 202 svl~nlaqqy~~ndm~~ealntyeiivknk-------------------------mf~nag~lkmnigni~~kkr~fska 256 (840)
T KOG2003|consen 202 SVLFNLAQQYEANDMTAEALNTYEIIVKNK-------------------------MFPNAGILKMNIGNIHFKKREFSKA 256 (840)
T ss_pred HHHHHHHHHhhhhHHHHHHhhhhhhhhccc-------------------------ccCCCceeeeeecceeeehhhHHHH
Confidence 345556667777777778877777665421 1111111 01122556777788888
Q ss_pred HHHHhcC----CCCC----cccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCchHHHHHHHHH
Q 046194 311 RSVFRFM----IGKD----SVSWNTMISGLDQNGCYEEAIMNFCAMRRDGLMSSNFSLISTLSSCASLGWIMLGQQIHGE 382 (934)
Q Consensus 311 ~~~f~~~----~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~ 382 (934)
++.++.. |.-+ +...|.+--.+.+.|+++.|+..|+...+. .|+-.+-..++-++...|+-+..++.|..
T Consensus 257 ikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~k 334 (840)
T KOG2003|consen 257 IKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQK 334 (840)
T ss_pred HHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHH
Confidence 8877543 2212 223444555678899999999999888773 57777766666666677888888888888
Q ss_pred HhhhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCccchHH-----HHHHHHhCCcc-HHHHHHHHHHHHHcCCC
Q 046194 383 GLKLGLDSDVSVSNALLSLYADAGYLSRCLKVFFLMPEHDQVSWNS-----VIGAFADSEAL-VSEAVKYYLDMRRAGWS 456 (934)
Q Consensus 383 ~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~-----li~~~~~~g~~-~~~A~~l~~~m~~~g~~ 456 (934)
++.....+|..-| .+..+ .|+....|- ++.-.-+.... .++++-.--++...-+.
T Consensus 335 li~ip~~~dddky-------i~~~d------------dp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~ 395 (840)
T KOG2003|consen 335 LIDIPGEIDDDKY-------IKEKD------------DPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIA 395 (840)
T ss_pred HhcCCCCCCcccc-------cCCcC------------CcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccc
Confidence 8765444432211 11100 011111111 11111111110 02222222233322233
Q ss_pred CCccc-HHHHHHHHhccCCchHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccCCCcchHHH----
Q 046194 457 PNGVT-FINILAAASSFSMGKLGHQVHAQVIKYNVANETTIENALLSCYGKCGEMDDCEKIFARMSERRDEVSWNS---- 531 (934)
Q Consensus 457 p~~~t-~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~---- 531 (934)
|+-.. +..-+...-.....+.|.. .. -.-..-|.+.|+++.|.+++.-...+ |..+-.+
T Consensus 396 ~~fa~g~dwcle~lk~s~~~~la~d-------------le--i~ka~~~lk~~d~~~aieilkv~~~k-dnk~~saaa~n 459 (840)
T KOG2003|consen 396 PDFAAGCDWCLESLKASQHAELAID-------------LE--INKAGELLKNGDIEGAIEILKVFEKK-DNKTASAAANN 459 (840)
T ss_pred cchhcccHHHHHHHHHhhhhhhhhh-------------hh--hhHHHHHHhccCHHHHHHHHHHHHhc-cchhhHHHhhh
Confidence 33211 1111111111111111111 11 11223467788888888887777665 3322211
Q ss_pred HH-HHHHh-cCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhc
Q 046194 532 MI-SGYIH-NELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKC 609 (934)
Q Consensus 532 li-~~~~~-~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~ 609 (934)
|- --|.+ ..++..|.+.-+...... +-+......--......|++++|.+.+.+++.+.-.-....|| +.-.+-+.
T Consensus 460 l~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~ 537 (840)
T KOG2003|consen 460 LCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEAL 537 (840)
T ss_pred hHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHh
Confidence 11 12333 234556655554443321 1122222222222345688888888888877653332223333 22346778
Q ss_pred CCHHHHHHHhccCC---CCCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhCcHHHHHHHH
Q 046194 610 GRIDYASRFFDLMP---VRNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPD-HVTFVGVLSACSHAGLVDEGFKHF 685 (934)
Q Consensus 610 g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~ 685 (934)
|++++|+..|-.+. ..+....-.+.+.|-...++.+|++++-+... +-|+ ...+.-|...|-+.|+-..|.+++
T Consensus 538 ~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~s--lip~dp~ilskl~dlydqegdksqafq~~ 615 (840)
T KOG2003|consen 538 GNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANS--LIPNDPAILSKLADLYDQEGDKSQAFQCH 615 (840)
T ss_pred cCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--cCCCCHHHHHHHHHHhhcccchhhhhhhh
Confidence 99999999887654 45666777788899999999999999988776 4555 666777888899999999999886
Q ss_pred HHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCC
Q 046194 686 KSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKM-PITPNSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQ 764 (934)
Q Consensus 686 ~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~ 764 (934)
-.--+ -++.+.++..-|..-|....-+++|..+|++. -+.|+.+-|..++..|.+.. |+++.|...++......|+
T Consensus 616 ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrs-gnyqka~d~yk~~hrkfpe 692 (840)
T KOG2003|consen 616 YDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRS-GNYQKAFDLYKDIHRKFPE 692 (840)
T ss_pred hhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHhCcc
Confidence 55433 24445888888999999999999999999998 58999999999999888765 9999999999999999999
Q ss_pred CCchHHHHHHHHHcCCCh
Q 046194 765 NAVNYVLLANMYASGGKW 782 (934)
Q Consensus 765 ~~~~y~~l~~~~~~~g~~ 782 (934)
|....-.|+.+....|..
T Consensus 693 dldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 693 DLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred chHHHHHHHHHhccccch
Confidence 999999999998888853
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.3e-13 Score=143.15 Aligned_cols=253 Identities=13% Similarity=0.145 Sum_probs=112.5
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHH-HHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCH
Q 046194 534 SGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVL-SACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRI 612 (934)
Q Consensus 534 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll-~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~ 612 (934)
..+.+.|++++|++++.+.......|+...|-.++ ..+...++.+.|.+.++.+...+.. ++..+..++.. ...+++
T Consensus 16 ~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~ 93 (280)
T PF13429_consen 16 RLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDP 93 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccccc
Confidence 33444555555555554333322123333332222 2333455555566555555544322 44556666666 678888
Q ss_pred HHHHHHhccCC--CCCcccccHHHHHHHHcCChHHHHHHHHHHHHCC-CCCChhhHHHHHHHHHhhCcHHHHHHHHHHhH
Q 046194 613 DYASRFFDLMP--VRNVYSWNSMISGYARHGHGDKALTLFSQMKLDG-PLPDHVTFVGVLSACSHAGLVDEGFKHFKSMS 689 (934)
Q Consensus 613 ~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 689 (934)
++|.+++...- .++...+..++..+.+.|+++++..+++++.... .+++...|..+...+.+.|+.++|.+.+++..
T Consensus 94 ~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al 173 (280)
T PF13429_consen 94 EEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKAL 173 (280)
T ss_dssp ------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred cccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 88888887653 3566678888889999999999999999987643 23455667777778899999999999999998
Q ss_pred HhhCCCCC-cccHHHHHHHHhhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCC
Q 046194 690 QVYGLIPQ-LEQFSCMVDLLGRAGELDKIEEFINKM--PITPNSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNA 766 (934)
Q Consensus 690 ~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 766 (934)
+ ..|+ ......++..+...|+.+++.++++.. ..++|+..|..+..++... |+.+.|...++++.+.+|+|+
T Consensus 174 ~---~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~l--g~~~~Al~~~~~~~~~~p~d~ 248 (280)
T PF13429_consen 174 E---LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQL--GRYEEALEYLEKALKLNPDDP 248 (280)
T ss_dssp H---H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHH--T-HHHHHHHHHHHHHHSTT-H
T ss_pred H---cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccc--ccccccccccccccccccccc
Confidence 7 4565 778889999999999999988888776 2245566889999999999 999999999999999999999
Q ss_pred chHHHHHHHHHcCCChHHHHHHHHHHH
Q 046194 767 VNYVLLANMYASGGKWEDVAKARKAMK 793 (934)
Q Consensus 767 ~~y~~l~~~~~~~g~~~~a~~~~~~m~ 793 (934)
.....+++++...|+.++|.++++..-
T Consensus 249 ~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 249 LWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHHT----------------
T ss_pred ccccccccccccccccccccccccccc
Confidence 999999999999999999999987654
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.5e-11 Score=132.03 Aligned_cols=264 Identities=13% Similarity=0.147 Sum_probs=185.1
Q ss_pred hhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhchhhHHHHHHHHHHHHHhCC--CCcHhHHHHHHHHHHhcCCHH-HHHHH
Q 046194 542 LPKAMNLVWFMMQRGQRLDHFTFATVLSACASVATLERGMEVHACGVRACL--EFDVVIGSALVDMYSKCGRID-YASRF 618 (934)
Q Consensus 542 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~--~~~~~~~~~li~~y~~~g~~~-~A~~~ 618 (934)
..+|+..|.+.... +.-.......+-.+|-.+++++++..+|+.+.+... --+..+|++.+--+-+.=.+. -|..+
T Consensus 335 ~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~L 413 (638)
T KOG1126|consen 335 CREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDL 413 (638)
T ss_pred HHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHH
Confidence 44555555553322 222334455555566666666666666666655321 114556655543322211111 12222
Q ss_pred hccCCCCCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC
Q 046194 619 FDLMPVRNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLP-DHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ 697 (934)
Q Consensus 619 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~ 697 (934)
.+. ....+.+|.++..+|.-+++++.|++.|++..+ +.| ...+|+.+..-+.....+|.|...|+.... .+
T Consensus 414 i~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~-----~~ 485 (638)
T KOG1126|consen 414 IDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG-----VD 485 (638)
T ss_pred Hhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc-----CC
Confidence 222 234567999999999999999999999999988 567 477787777777888889999999987754 67
Q ss_pred cccHHH---HHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHH
Q 046194 698 LEQFSC---MVDLLGRAGELDKIEEFINKM-PITPN-SLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLL 772 (934)
Q Consensus 698 ~~~y~~---li~~l~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l 772 (934)
+.||++ |.-.|.+.++++.|+-.|+++ .+.|. .++...+...+.+. |+.|+|.+.+++++.++|.|+..-+..
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~--k~~d~AL~~~~~A~~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQL--KRKDKALQLYEKAIHLDPKNPLCKYHR 563 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHh--hhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence 777776 456788999999999999888 78885 44555566666666 999999999999999999999999999
Q ss_pred HHHHHcCCChHHHHHHHHHHHhCCCcCCCceeEEEeCCEEEEEEcCCCCCCChHHHHHHHHHHHHHHHHC
Q 046194 773 ANMYASGGKWEDVAKARKAMKEAEVKKEAGCSWVTMKDGVHVFVAGDESHPEKDLIYEKLKELNQKMRDA 842 (934)
Q Consensus 773 ~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~~~ 842 (934)
+.++...+++++|.+.++++++ .-|+..-++.-+.++.++|+..
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~--------------------------~vP~es~v~~llgki~k~~~~~ 607 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKE--------------------------LVPQESSVFALLGKIYKRLGNT 607 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHH--------------------------hCcchHHHHHHHHHHHHHHccc
Confidence 9999999999999999999885 3355666777777777777644
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.4e-10 Score=116.73 Aligned_cols=211 Identities=13% Similarity=0.130 Sum_probs=158.8
Q ss_pred hhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCC---CCcccccHHHHHHHHcCChHHHHHHHH
Q 046194 575 ATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPV---RNVYSWNSMISGYARHGHGDKALTLFS 651 (934)
Q Consensus 575 ~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~ 651 (934)
|+.-.+.+-++.+++....++. .|--+..+|....+.++-++.|+.... .|..+|..-...+.-.+++++|+.=|+
T Consensus 340 g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~ 418 (606)
T KOG0547|consen 340 GDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQ 418 (606)
T ss_pred CCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555554332221 244445567777777777777776552 355577766677777788999999999
Q ss_pred HHHHCCCCCC-hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhC-CCCCC
Q 046194 652 QMKLDGPLPD-HVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKM-PITPN 729 (934)
Q Consensus 652 ~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p~ 729 (934)
+.+. +.|+ ...|..+..+..+.+.++++...|++..++ ++-.++.|+.....+...+++++|.+.++.. .++|.
T Consensus 419 Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 419 KAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPR 494 (606)
T ss_pred HHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccc
Confidence 9988 5666 556777777777889999999999999985 5444899999999999999999999999876 45554
Q ss_pred ---------HHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHH
Q 046194 730 ---------SLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMK 793 (934)
Q Consensus 730 ---------~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~ 793 (934)
+.+-.+++- .+-. +++..|+.+.+++++++|.....|..|+.+....|+.++|.++|++-.
T Consensus 495 ~~~~~v~~~plV~Ka~l~-~qwk--~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 495 EHLIIVNAAPLVHKALLV-LQWK--EDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred cccccccchhhhhhhHhh-hchh--hhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 223233332 2344 899999999999999999999999999999999999999999988653
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.33 E-value=7.5e-09 Score=106.46 Aligned_cols=253 Identities=10% Similarity=0.063 Sum_probs=197.0
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhchhhHHHHHHHHHHHHHhCCC--CcHhHHHHHHHHHHhcCC
Q 046194 534 SGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVATLERGMEVHACGVRACLE--FDVVIGSALVDMYSKCGR 611 (934)
Q Consensus 534 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~--~~~~~~~~li~~y~~~g~ 611 (934)
.+|-...+.++++.-.......|..-+...-+....+.-+..++++|..+|+.+.+...- -|..+|+.++-.--.+..
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk 314 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK 314 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH
Confidence 455555677788887777777776555544444444556778999999999999987321 167777766533322222
Q ss_pred HH-HHHHHhccCCCCCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhCcHHHHHHHHHHhH
Q 046194 612 ID-YASRFFDLMPVRNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPD-HVTFVGVLSACSHAGLVDEGFKHFKSMS 689 (934)
Q Consensus 612 ~~-~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 689 (934)
+. -|..+++ +.+--+.|...+.+-|...++.++|+..|++..+ +.|. ...|+.+..-|....+...|++-++...
T Consensus 315 Ls~LA~~v~~-idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALk--LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAv 391 (559)
T KOG1155|consen 315 LSYLAQNVSN-IDKYRPETCCIIANYYSLRSEHEKAVMYFKRALK--LNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAV 391 (559)
T ss_pred HHHHHHHHHH-hccCCccceeeehhHHHHHHhHHHHHHHHHHHHh--cCcchhHHHHHhhHHHHHhcccHHHHHHHHHHH
Confidence 22 2333332 2333455777888889999999999999999998 4676 4557666677999999999999999998
Q ss_pred HhhCCCC-CcccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCC
Q 046194 690 QVYGLIP-QLEQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNA 766 (934)
Q Consensus 690 ~~~~~~p-~~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 766 (934)
+ +.| |-..|-.|+++|.-.+...=|+-+|++. ..+| |...|.+|...|.+. ++.++|+..++.++.....+.
T Consensus 392 d---i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl--~~~~eAiKCykrai~~~dte~ 466 (559)
T KOG1155|consen 392 D---INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKL--NRLEEAIKCYKRAILLGDTEG 466 (559)
T ss_pred h---cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHh--ccHHHHHHHHHHHHhccccch
Confidence 6 444 4778999999999999999999999998 6777 578999999999999 999999999999999998899
Q ss_pred chHHHHHHHHHcCCChHHHHHHHHHHHh
Q 046194 767 VNYVLLANMYASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 767 ~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 794 (934)
..|+.|+++|-+.++.++|...+++-.+
T Consensus 467 ~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 467 SALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 9999999999999999999999876654
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.33 E-value=9.6e-07 Score=98.90 Aligned_cols=695 Identities=13% Similarity=0.134 Sum_probs=387.4
Q ss_pred HHHhcCCCCchhhhHHHHHHhhcCChhhHHHhhccCCC--CChhhHHHHHHHHhcCCChhhHHHHHHHHHHcCCCCCcc-
Q 046194 11 ILKHGFAYDVFLCNTLINVYVRVGDLASASKLFDEMPD--RNSVSWACIVSGYTHKGMSNEACKMFKEMVRAGFLLNRY- 87 (934)
Q Consensus 11 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~- 87 (934)
..+.|..|| |--+|....+ -+.+++.++.-.|++ +...-.+.+...+......+.+..++-..+.. -.|+..
T Consensus 504 ~kKvGyTPd---ymflLq~l~r-~sPD~~~qFa~~l~Q~~~~~~die~I~DlFme~N~iQq~TSFLLdaLK~-~~Pd~g~ 578 (1666)
T KOG0985|consen 504 AKKVGYTPD---YMFLLQQLKR-SSPDQALQFAMMLVQDEEPLADIEQIVDLFMELNLIQQCTSFLLDALKL-NSPDEGH 578 (1666)
T ss_pred HHHcCCCcc---HHHHHHHHHc-cChhHHHHHHHHhhccCCCcccHHHHHHHHHHHHhhhhhHHHHHHHhcC-CChhhhh
Confidence 345666776 4445555554 556666666655554 34445566666666666666666655444332 233322
Q ss_pred cHHHHHHHhhhcCCCChhhhhHHHHHHHHhcCCCCchhhHHHHHHhhhCCCChHHHHHHhhccCC--CCcccHHHH----
Q 046194 88 ALGSVLRACQECGPSGFKFGMQVHCLVLKSNQTFDGLVSNVLIAMYGSCLESTDCARRIFEEIET--RDLISWNSI---- 161 (934)
Q Consensus 88 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~~g~~~~a~~~f~~~~~--~~~~~~~~l---- 161 (934)
.-..||.. .+-.|-++.+.++..+.-.+-. +-.+.+.+.+. |-...|.+-+..+.. |.++.-+.+
T Consensus 579 LQTrLLE~-------NL~~aPqVADAILgN~mFtHyD-ra~IAqLCEKA-GL~qraLehytDl~DIKR~vVhth~L~pEw 649 (1666)
T KOG0985|consen 579 LQTRLLEM-------NLVHAPQVADAILGNDMFTHYD-RAEIAQLCEKA-GLLQRALEHYTDLYDIKRVVVHTHLLNPEW 649 (1666)
T ss_pred HHHHHHHH-------HhccchHHHHHHHhcccccccc-HHHHHHHHHhc-chHHHHHHhcccHHHHHHHHHHhccCCHHH
Confidence 12222221 1122233333334333222222 66777778888 999999988877753 333221111
Q ss_pred HHHHHcCCCchHHHHHHHHHHHccCCCCCCCCceeHHHHHHHHhcCccccchHHHHHHHHHHHh-----------CCCCC
Q 046194 162 ISVYSQRGDTISVFKLFSRMQREGFRYSLKPNEYTFGSLITAAYSSVLSGSYLLQQILAMVKKA-----------GLLSD 230 (934)
Q Consensus 162 i~~~~~~g~~~~A~~l~~~m~~~g~~~~~~p~~~t~~~ll~a~~~~~~~~~~~a~~i~~~~~~~-----------g~~~~ 230 (934)
+..|.-.-.++++++.++.|....+ +-|..+..-+-.-+...-..+. ..++|+..+.. ++.-|
T Consensus 650 Lv~yFg~lsve~s~eclkaml~~Ni----rqNlQi~VQvatky~eqlg~~~--li~lFE~fks~eGL~yfLgSivn~seD 723 (1666)
T KOG0985|consen 650 LVNYFGSLSVEDSLECLKAMLSANI----RQNLQIVVQVATKYHEQLGAQA--LIELFESFKSYEGLYYFLGSIVNFSED 723 (1666)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHH----HhhhHHHHHHHHHHHHHhCHHH--HHHHHHhhccchhHHHHHHHHhccccC
Confidence 2344445568899999999998877 6666555444444433322222 44555554431 35677
Q ss_pred ccchhHHHHHHHhcCChHHHHHHHHHhhhcccchhhhhhhhhhhhhHH--HHHHHHHcCCCchhHHHHHHHHhhccCChh
Q 046194 231 LYVGSALVSGFARLGNFYYARKIFEQMIQKNVVSMNGLMEGRRKGKEV--HGYLIRSGLFDMVAVGNGLVNMYAKCGTID 308 (934)
Q Consensus 231 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~l~~~~~~~~~--~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 308 (934)
+.+.--.|.+.++.|++.+.+++.++-.--|+.-...+++...-..++ --..-+.++.+|.+ .|.-.+.+.
T Consensus 724 pevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL~DqlPLiiVCDRf~fVhdlv-------lYLyrnn~~ 796 (1666)
T KOG0985|consen 724 PEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLV-------LYLYRNNLQ 796 (1666)
T ss_pred chHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhccccccCceEEEecccccHHHHH-------HHHHHhhHH
Confidence 788888999999999999999998775433321111111000000000 00000111112211 122222222
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCchHHHHHHHHHHhhhCC
Q 046194 309 DSRSVFRFMIGKDSVSWNTMISGLDQNGCYEEAIMNFCAMRRDGLMSSNFSLISTLSSCASLGWIMLGQQIHGEGLKLGL 388 (934)
Q Consensus 309 ~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~ 388 (934)
+=.+++-+-..| .---.++.++..-...++.++-+-.-.. |. +...-+..-+-+.+++..-...++..+..|.
T Consensus 797 kyIE~yVQkvNp--s~~p~VvG~LLD~dC~E~~ik~Li~~v~-gq----~~~deLv~EvEkRNRLklLlp~LE~~i~eG~ 869 (1666)
T KOG0985|consen 797 KYIEIYVQKVNP--SRTPQVVGALLDVDCSEDFIKNLILSVR-GQ----FPVDELVEEVEKRNRLKLLLPWLESLIQEGS 869 (1666)
T ss_pred HHHHHHHhhcCC--cccchhhhhhhcCCCcHHHHHHHHHHHh-cc----CChHHHHHHHHhhhhHHHHHHHHHHHHhccC
Confidence 222222211111 1112233333333333443333222222 21 1223344555566677777777777777774
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCccchHHHHHHHHhCCccHHHH-------------HHH------HHH
Q 046194 389 DSDVSVSNALLSLYADAGYLSRCLKVFFLMPEHDQVSWNSVIGAFADSEALVSEA-------------VKY------YLD 449 (934)
Q Consensus 389 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~~A-------------~~l------~~~ 449 (934)
.|..++|+|...|....+-.+- .+++ |..-=+..+.-||...++ .-| +.+ |+.
T Consensus 870 -~d~a~hnAlaKIyIDSNNnPE~--fLke----N~yYDs~vVGkYCEKRDP-~lA~vaYerGqcD~elI~vcNeNSlfK~ 941 (1666)
T KOG0985|consen 870 -QDPATHNALAKIYIDSNNNPER--FLKE----NPYYDSKVVGKYCEKRDP-HLACVAYERGQCDLELINVCNENSLFKS 941 (1666)
T ss_pred -cchHHHhhhhheeecCCCChHH--hccc----CCcchhhHHhhhhcccCC-ceEEEeecccCCcHHHHHhcCchhHHHH
Confidence 5778889998888877654321 1111 111111122223322222 111 111 000
Q ss_pred HHHc-CCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhcCC--CchhHHHHHHHHHHhcCCHHHHHHHHHhhccCCCc
Q 046194 450 MRRA-GWSPNGVTFINILAAASSFSMGKLGHQVHAQVIKYNVA--NETTIENALLSCYGKCGEMDDCEKIFARMSERRDE 526 (934)
Q Consensus 450 m~~~-g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~ 526 (934)
..+- --+.|...|..++. ..-..-+++.++++..+++ .|+.-.+.-+.++...+-..+-.++++.+.-.|++
T Consensus 942 ~aRYlv~R~D~~LW~~VL~-----e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~ 1016 (1666)
T KOG0985|consen 942 QARYLVERSDPDLWAKVLN-----EENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSV 1016 (1666)
T ss_pred HHHHHHhccChHHHHHHHh-----ccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcc
Confidence 0000 00112223332221 1112234556666666654 34555566778888888888888888887665444
Q ss_pred ch-----HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHH
Q 046194 527 VS-----WNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVATLERGMEVHACGVRACLEFDVVIGSA 601 (934)
Q Consensus 527 ~~-----~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ 601 (934)
++ -|.||-.-.+ -+..+..+..+++-.-. .|+ +...+...+-+++|..+|+. +..+....+.
T Consensus 1017 Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyD-a~~------ia~iai~~~LyEEAF~ifkk-----f~~n~~A~~V 1083 (1666)
T KOG0985|consen 1017 FSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYD-APD------IAEIAIENQLYEEAFAIFKK-----FDMNVSAIQV 1083 (1666)
T ss_pred cccchhhhhhHHHHHhh-cChHHHHHHHHHhccCC-chh------HHHHHhhhhHHHHHHHHHHH-----hcccHHHHHH
Confidence 33 2333333232 33444555555543321 222 22334556677788777765 3334555555
Q ss_pred HHHHHHhcCCHHHHHHHhccCCCCCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHH
Q 046194 602 LVDMYSKCGRIDYASRFFDLMPVRNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEG 681 (934)
Q Consensus 602 li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 681 (934)
||+ ..+.++.|.+.-++..+| ..|..+..+-.+.|...+|++-|-+. -|...|..++.++++.|.+++-
T Consensus 1084 Lie---~i~~ldRA~efAe~~n~p--~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edL 1152 (1666)
T KOG0985|consen 1084 LIE---NIGSLDRAYEFAERCNEP--AVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDL 1152 (1666)
T ss_pred HHH---HhhhHHHHHHHHHhhCCh--HHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHH
Confidence 553 456788888887776654 46999999999999999999988643 3567899999999999999999
Q ss_pred HHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhc
Q 046194 682 FKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKMPITPNSLIWRTVLGACCRANCRKTELGRKAANMLFEM 761 (934)
Q Consensus 682 ~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~ 761 (934)
.+++...+++ .-+|.++ +.|+-+|++.+++.|-.+++ .-||..-......-|... +.++-|+-.+..
T Consensus 1153 v~yL~MaRkk-~~E~~id--~eLi~AyAkt~rl~elE~fi----~gpN~A~i~~vGdrcf~~--~~y~aAkl~y~~---- 1219 (1666)
T KOG0985|consen 1153 VKYLLMARKK-VREPYID--SELIFAYAKTNRLTELEEFI----AGPNVANIQQVGDRCFEE--KMYEAAKLLYSN---- 1219 (1666)
T ss_pred HHHHHHHHHh-hcCccch--HHHHHHHHHhchHHHHHHHh----cCCCchhHHHHhHHHhhh--hhhHHHHHHHHH----
Confidence 9999877774 5556554 67999999999999988887 457888888899999999 898888777754
Q ss_pred CCCCCchHHHHHHHHHcCCChHHHHHHHHHHH
Q 046194 762 EPQNAVNYVLLANMYASGGKWEDVAKARKAMK 793 (934)
Q Consensus 762 ~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~ 793 (934)
.+.|..|+..+...|.+..|...-++..
T Consensus 1220 ----vSN~a~La~TLV~LgeyQ~AVD~aRKAn 1247 (1666)
T KOG0985|consen 1220 ----VSNFAKLASTLVYLGEYQGAVDAARKAN 1247 (1666)
T ss_pred ----hhhHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 4678888888899999988877644443
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=6.4e-10 Score=122.57 Aligned_cols=226 Identities=12% Similarity=-0.021 Sum_probs=126.9
Q ss_pred HHHHHhcCCHHHHHHHHHhhccC-C-CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhchhhHH
Q 046194 501 LSCYGKCGEMDDCEKIFARMSER-R-DEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVATLE 578 (934)
Q Consensus 501 i~~~~~~g~~~~A~~~~~~~~~~-p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~ 578 (934)
...+...|+++.|...++.+.+. | +......+...|.+.|++++|++++..+.+.+..++. .+..+-
T Consensus 160 a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l~---------- 228 (398)
T PRK10747 160 VRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAMLE---------- 228 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHHH----------
Confidence 44556666666666666665553 3 3444555556666666666666666666655433211 111000
Q ss_pred HHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCC---CCcccccHHHHHHHHcCChHHHHHHHHHHHH
Q 046194 579 RGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPV---RNVYSWNSMISGYARHGHGDKALTLFSQMKL 655 (934)
Q Consensus 579 ~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 655 (934)
...+..++....+..+.+...++++.++. .++.....+...+...|+.++|.+++++..+
T Consensus 229 -----------------~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~ 291 (398)
T PRK10747 229 -----------------QQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLK 291 (398)
T ss_pred -----------------HHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 01112222222333344455555555542 3445566666667777777777777777666
Q ss_pred CCCCCChhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhC-CCCCCHHHHH
Q 046194 656 DGPLPDHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKM-PITPNSLIWR 734 (934)
Q Consensus 656 ~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p~~~~~~ 734 (934)
. .||... .++.+....++.+++++..+...+. .+-|+..+.++..++.+.|++++|.+.|+++ ...|+..++.
T Consensus 292 ~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~ 365 (398)
T PRK10747 292 R--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYA 365 (398)
T ss_pred c--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHH
Confidence 2 344321 1222333446777777777766653 2222455666777777777777777777766 5667777766
Q ss_pred HHHHHHHhccCCCcHHHHHHHHHHHhcC
Q 046194 735 TVLGACCRANCRKTELGRKAANMLFEME 762 (934)
Q Consensus 735 ~ll~~~~~~~~~~~~~a~~~~~~~~~~~ 762 (934)
.|...+... |+.+.|...+++.+.+.
T Consensus 366 ~La~~~~~~--g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 366 WLADALDRL--HKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHc--CCHHHHHHHHHHHHhhh
Confidence 677777766 77777777777766553
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.5e-09 Score=108.77 Aligned_cols=357 Identities=11% Similarity=0.093 Sum_probs=214.7
Q ss_pred CCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCccchHHHHHHHHhCCccHHHHHHHHHHHHHcCCCCCcccH--HH
Q 046194 387 GLDSDVSVSNALLSLYADAGYLSRCLKVFFLMPEHDQVSWNSVIGAFADSEALVSEAVKYYLDMRRAGWSPNGVTF--IN 464 (934)
Q Consensus 387 g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~--~~ 464 (934)
+...|....-...-.+-+.|..+.|...|......-+..|.+-+....-..+ .+-+.. .. .|...|..-+ -.
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~--~e~~~~---l~-~~l~~~~h~M~~~F 232 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITD--IEILSI---LV-VGLPSDMHWMKKFF 232 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhch--HHHHHH---HH-hcCcccchHHHHHH
Confidence 3445555555555566677888888888877765434444433322111111 111111 11 1111111111 11
Q ss_pred HHHHHhccCCchHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccCCCcchHHHHHHHHHhcCChhH
Q 046194 465 ILAAASSFSMGKLGHQVHAQVIKYNVANETTIENALLSCYGKCGEMDDCEKIFARMSERRDEVSWNSMISGYIHNELLPK 544 (934)
Q Consensus 465 ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 544 (934)
+..++....+.+++.+-.......|++.+...-+....+.-...+++.|+.+|+++... |+.-
T Consensus 233 ~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~kn-DPYR---------------- 295 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKN-DPYR---------------- 295 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhc-CCCc----------------
Confidence 23344444455555555555566666655555554444555555566666666655543 1000
Q ss_pred HHHHHHHHHHcCCCCCHhHHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCC
Q 046194 545 AMNLVWFMMQRGQRLDHFTFATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPV 624 (934)
Q Consensus 545 A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~ 624 (934)
--|..+|+.++-.-.....+.---+....+ ..+ -+.+...+.+.|+-.++.+.|...|+...+
T Consensus 296 -------------l~dmdlySN~LYv~~~~skLs~LA~~v~~i--dKy--R~ETCCiIaNYYSlr~eHEKAv~YFkRALk 358 (559)
T KOG1155|consen 296 -------------LDDMDLYSNVLYVKNDKSKLSYLAQNVSNI--DKY--RPETCCIIANYYSLRSEHEKAVMYFKRALK 358 (559)
T ss_pred -------------chhHHHHhHHHHHHhhhHHHHHHHHHHHHh--ccC--CccceeeehhHHHHHHhHHHHHHHHHHHHh
Confidence 002233333332221111111000000001 112 234455566777777888888888887764
Q ss_pred CC---cccccHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC-cc
Q 046194 625 RN---VYSWNSMISGYARHGHGDKALTLFSQMKLDGPLP-DHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ-LE 699 (934)
Q Consensus 625 ~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~ 699 (934)
-| ...|+.|..-|...++...|++-+++.++ +.| |-..|-.|..+|.-.+...-|+-+|++..+ ++|+ ..
T Consensus 359 LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd--i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~---~kPnDsR 433 (559)
T KOG1155|consen 359 LNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD--INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALE---LKPNDSR 433 (559)
T ss_pred cCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh--cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHh---cCCCchH
Confidence 33 34788888888888888888888888888 444 567788888888888888888888888865 5665 77
Q ss_pred cHHHHHHHHhhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhccCCCcHHHHHHHHHHHh-------cCCCCCchHH
Q 046194 700 QFSCMVDLLGRAGELDKIEEFINKM--PITPNSLIWRTVLGACCRANCRKTELGRKAANMLFE-------MEPQNAVNYV 770 (934)
Q Consensus 700 ~y~~li~~l~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~-------~~p~~~~~y~ 770 (934)
.|.+|.++|.+.++.++|.+-|+.. .-..+..++..|...+... ++.++|.+++++-++ .+|+...+-.
T Consensus 434 lw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l--~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~ 511 (559)
T KOG1155|consen 434 LWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEEL--KDLNEAAQYYEKYVEVSELEGEIDDETIKARL 511 (559)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHHhhcccchHHHHHHH
Confidence 8888899998889999998888877 2233557788888888888 888888888888766 3344445556
Q ss_pred HHHHHHHcCCChHHHHHHHH
Q 046194 771 LLANMYASGGKWEDVAKARK 790 (934)
Q Consensus 771 ~l~~~~~~~g~~~~a~~~~~ 790 (934)
-|++-+.+.++|++|...-.
T Consensus 512 fLA~~f~k~~~~~~As~Ya~ 531 (559)
T KOG1155|consen 512 FLAEYFKKMKDFDEASYYAT 531 (559)
T ss_pred HHHHHHHhhcchHHHHHHHH
Confidence 68888889999999876533
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.7e-09 Score=119.95 Aligned_cols=145 Identities=10% Similarity=-0.017 Sum_probs=94.8
Q ss_pred HHHHHHhccCCC---CCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhH---HHHHHHHHhhCcHHHHHHHHH
Q 046194 613 DYASRFFDLMPV---RNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTF---VGVLSACSHAGLVDEGFKHFK 686 (934)
Q Consensus 613 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~---~~ll~a~~~~g~~~~a~~~~~ 686 (934)
+...+.++..+. .+...+..+...+...|+.++|++++++..+. .||.... ..........++.+.+.+.++
T Consensus 246 ~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e 323 (409)
T TIGR00540 246 DGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIE 323 (409)
T ss_pred HHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHH
Confidence 344444444442 36667777777788888888888888887774 4554321 111112233467777777777
Q ss_pred HhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHh--C-CCCCCHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhc
Q 046194 687 SMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINK--M-PITPNSLIWRTVLGACCRANCRKTELGRKAANMLFEM 761 (934)
Q Consensus 687 ~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~--m-~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~ 761 (934)
...+...-.|+.....++...+.+.|++++|.+.|+. . ...|+..++..|...+... |+.+.|...+++.+..
T Consensus 324 ~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~--g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 324 KQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQA--GDKAEAAAMRQDSLGL 399 (409)
T ss_pred HHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHH
Confidence 7766322222224566778888888888888888883 3 5678887777888888888 8888888888876543
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.5e-07 Score=95.47 Aligned_cols=417 Identities=11% Similarity=0.046 Sum_probs=245.7
Q ss_pred CchHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCC--CCCccchHHHHHHHHhCCccHHHHHHHHH
Q 046194 371 GWIMLGQQIHGEGLKLGLDSDVSVSNALLSLYADAGYLSRCLKVFFLMP--EHDQVSWNSVIGAFADSEALVSEAVKYYL 448 (934)
Q Consensus 371 ~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~~A~~l~~ 448 (934)
|++..|+++|+.-.+ ..|+...|.+.|+.=.+-..++.|..++++.. .|++.+|---..-=-++|.. ..|..+|.
T Consensus 155 gNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~-~~aR~Vye 231 (677)
T KOG1915|consen 155 GNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNV-ALARSVYE 231 (677)
T ss_pred cccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcH-HHHHHHHH
Confidence 344444444443332 23444444444444444444444444444422 24444444443333444444 44444444
Q ss_pred HHHHc-CC-CCCcccHHHHHHHHhccCCchHHHHHHHHHHHhcCCCc-hhHHHHHHHHHHhcCCHHHHHHH--------H
Q 046194 449 DMRRA-GW-SPNGVTFINILAAASSFSMGKLGHQVHAQVIKYNVANE-TTIENALLSCYGKCGEMDDCEKI--------F 517 (934)
Q Consensus 449 ~m~~~-g~-~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~--------~ 517 (934)
...+. |- .-+...|++....=.+...++.|.-++...+..-.... ...|..+...=-+-|+.....+. +
T Consensus 232 rAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qY 311 (677)
T KOG1915|consen 232 RAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQY 311 (677)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHH
Confidence 33321 10 00111222222233344566777777777766543332 33444444444445554333322 2
Q ss_pred HhhccC-C-CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH--hH---HH-HHHH-HH---hchhhHHHHHHHHH
Q 046194 518 ARMSER-R-DEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDH--FT---FA-TVLS-AC---ASVATLERGMEVHA 585 (934)
Q Consensus 518 ~~~~~~-p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t---~~-~ll~-a~---~~~~~~~~a~~i~~ 585 (934)
+.+... | |-.+|--.+..--..|+.+...++|++.+.. ++|-. .. |. .-|+ +| ....+.+.+.++++
T Consensus 312 E~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq 390 (677)
T KOG1915|consen 312 EKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQ 390 (677)
T ss_pred HHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 222222 3 6667777777777789999999999998875 55532 11 11 1122 11 24678889999999
Q ss_pred HHHHhCCCCcHhHHHHHHHHHH----hcCCHHHHHHHhccCC--CCCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCC
Q 046194 586 CGVRACLEFDVVIGSALVDMYS----KCGRIDYASRFFDLMP--VRNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPL 659 (934)
Q Consensus 586 ~~~~~~~~~~~~~~~~li~~y~----~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 659 (934)
..++ -++...+++.-+=-+|+ ++.++..|.+++.... .|-..++..-|..-.+.++++....+|++.++-+ +
T Consensus 391 ~~l~-lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-P 468 (677)
T KOG1915|consen 391 ACLD-LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-P 468 (677)
T ss_pred HHHh-hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-h
Confidence 8888 24445566665554554 6788999999998765 4667778888888888999999999999999853 3
Q ss_pred CChhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhC-CCCCCHHHHHHHHH
Q 046194 660 PDHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKM-PITPNSLIWRTVLG 738 (934)
Q Consensus 660 p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~ 738 (934)
-|..+|......=...|+.+.|..+|+-..+.-.+......|-+.|+.-...|.++.|..++++. ...+...+|-++..
T Consensus 469 e~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~ 548 (677)
T KOG1915|consen 469 ENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFAK 548 (677)
T ss_pred HhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHHH
Confidence 34677877777777889999999999988875223333456777778778899999999999987 45556668877765
Q ss_pred HHHh---ccCC-----------CcHHHHHHHHHHHhc----CCCC--CchHHHHHHHHHcCCChHHHHHHHHHHH
Q 046194 739 ACCR---ANCR-----------KTELGRKAANMLFEM----EPQN--AVNYVLLANMYASGGKWEDVAKARKAMK 793 (934)
Q Consensus 739 ~~~~---~~~~-----------~~~~a~~~~~~~~~~----~p~~--~~~y~~l~~~~~~~g~~~~a~~~~~~m~ 793 (934)
-=.. +..+ ++..|..+++.+... +|.. .......-+.-...|.-.+...+-+.|.
T Consensus 549 fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~mP 623 (677)
T KOG1915|consen 549 FEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQSKMP 623 (677)
T ss_pred HhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhcc
Confidence 4331 1113 456777777776543 3322 1223334445556676666666666554
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.5e-08 Score=106.97 Aligned_cols=260 Identities=12% Similarity=0.037 Sum_probs=186.3
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhhccC--CCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 046194 492 NETTIENALLSCYGKCGEMDDCEKIFARMSER--RDEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLS 569 (934)
Q Consensus 492 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 569 (934)
.++.+.-...+-+...+++.+..++++.+.+. +....+..-|.++...|+..+-..+=.+|.+.
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-------------- 307 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-------------- 307 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh--------------
Confidence 34444445555566666666666666666554 23334444555566666655555555555543
Q ss_pred HHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCCCC---cccccHHHHHHHHcCChHHH
Q 046194 570 ACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPVRN---VYSWNSMISGYARHGHGDKA 646 (934)
Q Consensus 570 a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A 646 (934)
.+..+.+|-++.-.|.-.|+..+|++.|.....-| ...|-.....|+-.|..++|
T Consensus 308 ----------------------yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQA 365 (611)
T KOG1173|consen 308 ----------------------YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQA 365 (611)
T ss_pred ----------------------CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHH
Confidence 22344555556656666788888888887655333 23788888899999999999
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhhcCChHHHHHHHHhC-
Q 046194 647 LTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGRAGELDKIEEFINKM- 724 (934)
Q Consensus 647 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m- 724 (934)
+.-+...-+. ++-...-+..+.--|.+.+..+.|.++|.+.. ++.|+ +..++-+.-+.-..+.+.+|..+|+..
T Consensus 366 maaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l 441 (611)
T KOG1173|consen 366 MAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKAL 441 (611)
T ss_pred HHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHH
Confidence 9988887763 22223334445556888999999999998885 56676 667777777777888999999888765
Q ss_pred -C------CCC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHH
Q 046194 725 -P------ITP-NSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMK 793 (934)
Q Consensus 725 -~------~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~ 793 (934)
+ ..+ =..+|+.|..+|++. +..++|...+++++.+.|.++.+|..++-+|...|+.+.|.+.+.+..
T Consensus 442 ~~ik~~~~e~~~w~p~~~NLGH~~Rkl--~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 442 EVIKSVLNEKIFWEPTLNNLGHAYRKL--NKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKAL 516 (611)
T ss_pred HHhhhccccccchhHHHHhHHHHHHHH--hhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 1 111 245688999999999 999999999999999999999999999999999999999999887665
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=7.5e-09 Score=114.12 Aligned_cols=246 Identities=9% Similarity=-0.015 Sum_probs=158.9
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHhHHH--HHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHH
Q 046194 537 IHNELLPKAMNLVWFMMQRGQRLDHFTFA--TVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDY 614 (934)
Q Consensus 537 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~--~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~ 614 (934)
.+.|+++.|...|.++.+. .|+..... .....+...|+.+.|.+.++.+.+.. +-++.+...+...|.+.|++++
T Consensus 129 ~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~ 205 (398)
T PRK10747 129 QQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSS 205 (398)
T ss_pred HHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHH
Confidence 4455555555555555432 23322111 11234444555555555555554433 2244555555666666666666
Q ss_pred HHHHhccCCCCCcc-----------cccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHHHH
Q 046194 615 ASRFFDLMPVRNVY-----------SWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGFK 683 (934)
Q Consensus 615 A~~~~~~~~~~~~~-----------~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 683 (934)
|.+++..+.+.... +|..++.......+.+...++++.+.+. .+.+......+..++...|+.++|.+
T Consensus 206 a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~ 284 (398)
T PRK10747 206 LLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQ 284 (398)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 66665555432111 2333333334445566677777776543 24456678888899999999999999
Q ss_pred HHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhccCCCcHHHHHHHHHHHhc
Q 046194 684 HFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKM-PITPN-SLIWRTVLGACCRANCRKTELGRKAANMLFEM 761 (934)
Q Consensus 684 ~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~ 761 (934)
++++..+ ..|+... .++......|+.+++.+.+++. +..|+ +.....+...|... ++++.|+..++++.+.
T Consensus 285 ~L~~~l~---~~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~--~~~~~A~~~le~al~~ 357 (398)
T PRK10747 285 IILDGLK---RQYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKH--GEWQEASLAFRAALKQ 357 (398)
T ss_pred HHHHHHh---cCCCHHH--HHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHhc
Confidence 9988876 3444421 1233334569999999999988 55665 45577888888888 9999999999999999
Q ss_pred CCCCCchHHHHHHHHHcCCChHHHHHHHHHHHh
Q 046194 762 EPQNAVNYVLLANMYASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 762 ~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 794 (934)
.|++ ..|..|+.++.+.|+.++|.+.+++-..
T Consensus 358 ~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 358 RPDA-YDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9986 5577999999999999999999886643
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.7e-10 Score=120.83 Aligned_cols=270 Identities=13% Similarity=0.085 Sum_probs=202.0
Q ss_pred HHHHHHHHHhhccC-CCcchH--HHHHHHHHhcCChhHHHHHHHHHHHcC-C-CCCHhHHHHHHHHHhchhhHHHHHHHH
Q 046194 510 MDDCEKIFARMSER-RDEVSW--NSMISGYIHNELLPKAMNLVWFMMQRG-Q-RLDHFTFATVLSACASVATLERGMEVH 584 (934)
Q Consensus 510 ~~~A~~~~~~~~~~-p~~~~~--~~li~~~~~~g~~~~A~~l~~~m~~~g-~-~p~~~t~~~ll~a~~~~~~~~~a~~i~ 584 (934)
..+|...|..++.. +|+. | ..+..+|...+++++|.++|+...+.. . .-+...|.++|--+-+. .++..+
T Consensus 335 ~~~A~~~~~klp~h~~nt~-wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~L 409 (638)
T KOG1126|consen 335 CREALNLFEKLPSHHYNTG-WVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYL 409 (638)
T ss_pred HHHHHHHHHhhHHhcCCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHH
Confidence 46788888886654 4544 4 345567888888899999988887642 1 11446666665433221 111222
Q ss_pred H-HHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCCCC---cccccHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 046194 585 A-CGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPVRN---VYSWNSMISGYARHGHGDKALTLFSQMKLDGPLP 660 (934)
Q Consensus 585 ~-~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 660 (934)
. .+++ --+-.+.+|.++.+.|.-.++.+.|++.|++..+-| ..+|+.+..-+.....+|+|...|+..+. +.|
T Consensus 410 aq~Li~-~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~ 486 (638)
T KOG1126|consen 410 AQDLID-TDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDP 486 (638)
T ss_pred HHHHHh-hCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCc
Confidence 2 1222 123368899999999999999999999999987544 45788888888889999999999999876 455
Q ss_pred C-hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhhcCChHHHHHHHHhC-CCCC---CHHHHH
Q 046194 661 D-HVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGRAGELDKIEEFINKM-PITP---NSLIWR 734 (934)
Q Consensus 661 ~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p---~~~~~~ 734 (934)
. -..|..+...|.+.++++.|.-.|+...+ +.|. .....++...+-+.|+.|+|+.+++++ .+.| -.....
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~---INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE---INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR 563 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhc---CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence 5 34577777789999999999999999865 7777 677788889999999999999999998 3333 222333
Q ss_pred HHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHHh
Q 046194 735 TVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 735 ~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 794 (934)
+.+ +... ++.++|.+.+|.+.++-|++...|.+++.+|.+.|+.+.|..-+..+.+
T Consensus 564 ~~i--l~~~--~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 564 ASI--LFSL--GRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALD 619 (638)
T ss_pred HHH--HHhh--cchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence 332 3333 8899999999999999999999999999999999999999877665554
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.26 E-value=5.5e-09 Score=115.87 Aligned_cols=126 Identities=10% Similarity=0.041 Sum_probs=78.1
Q ss_pred ChhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCccc---HHHHHHHHhhcCChHHHHHHHHhC-CCCCC-H--HHH
Q 046194 661 DHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQ---FSCMVDLLGRAGELDKIEEFINKM-PITPN-S--LIW 733 (934)
Q Consensus 661 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~---y~~li~~l~~~g~~~~A~~~~~~m-~~~p~-~--~~~ 733 (934)
+...+..+...+...|+.++|.+.+++..+. .|+... .....-.....++.+.+.+.+++. ...|+ + ...
T Consensus 262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~---~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll 338 (409)
T TIGR00540 262 NIALKIALAEHLIDCDDHDSAQEIIFDGLKK---LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCIN 338 (409)
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHhh---CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHH
Confidence 4555666666777777777777777777663 244221 111111223346667777777665 33333 2 455
Q ss_pred HHHHHHHHhccCCCcHHHHHHHH--HHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHH
Q 046194 734 RTVLGACCRANCRKTELGRKAAN--MLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAM 792 (934)
Q Consensus 734 ~~ll~~~~~~~~~~~~~a~~~~~--~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m 792 (934)
.++.+.|... |+++.|...++ ...+..|++. .+..++.++.+.|+.++|.+++++-
T Consensus 339 ~sLg~l~~~~--~~~~~A~~~le~a~a~~~~p~~~-~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 339 RALGQLLMKH--GEFIEAADAFKNVAACKEQLDAN-DLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHHHHc--ccHHHHHHHHHHhHHhhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6777777777 77777777777 4555666543 3557777777777777777777654
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.7e-08 Score=99.26 Aligned_cols=307 Identities=13% Similarity=0.130 Sum_probs=168.8
Q ss_pred CCccHHHHHHHHHHHHHcCCCCCcccH---HHHHHHHhccCCchHHHHHHHHHHHhcCCCc---hhHHHHHHHHHHhcCC
Q 046194 436 SEALVSEAVKYYLDMRRAGWSPNGVTF---INILAAASSFSMGKLGHQVHAQVIKYNVANE---TTIENALLSCYGKCGE 509 (934)
Q Consensus 436 ~g~~~~~A~~l~~~m~~~g~~p~~~t~---~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~---~~~~~~li~~~~~~g~ 509 (934)
+.+. ++|.++|-+|.+. |..|| .+|-+-+.+.|.++.|..+|+-+.++.--+. ....-.|..-|...|-
T Consensus 48 s~Q~-dKAvdlF~e~l~~----d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl 122 (389)
T COG2956 48 SNQP-DKAVDLFLEMLQE----DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGL 122 (389)
T ss_pred hcCc-chHHHHHHHHHhc----CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhh
Confidence 3556 8999999999873 33333 3344444555555555555555444321111 1122233344455555
Q ss_pred HHHHHHHHHhhccCC--CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhchhhHHHHHHHHHHH
Q 046194 510 MDDCEKIFARMSERR--DEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVATLERGMEVHACG 587 (934)
Q Consensus 510 ~~~A~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~ 587 (934)
+|.|+.+|..+.+.| -......|+..|-...+|++|++.-+++...+-++..+-.
T Consensus 123 ~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eI----------------------- 179 (389)
T COG2956 123 LDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEI----------------------- 179 (389)
T ss_pred hhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHH-----------------------
Confidence 555555555544431 1122333444444455555555544444443322221110
Q ss_pred HHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCCCCcc---cccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhh
Q 046194 588 VRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPVRNVY---SWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVT 664 (934)
Q Consensus 588 ~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 664 (934)
...|.-|...+.-..+.+.|..++.+..+.|.. .--.+...+...|+++.|++.++...+.+..--..+
T Consensus 180 --------AqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~ev 251 (389)
T COG2956 180 --------AQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEV 251 (389)
T ss_pred --------HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHH
Confidence 123334555555566777777777766543333 222344567778888888888888888642222455
Q ss_pred HHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHH-HhCCCCCCHHHHHHHHHHHHhc
Q 046194 665 FVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFI-NKMPITPNSLIWRTVLGACCRA 743 (934)
Q Consensus 665 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~-~~m~~~p~~~~~~~ll~~~~~~ 743 (934)
...|..+|.+.|+.+++..++..+.+. .+....-..|.+......-.+.|...+ +...-+|+...+.-|+..-...
T Consensus 252 l~~L~~~Y~~lg~~~~~~~fL~~~~~~---~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~d 328 (389)
T COG2956 252 LEMLYECYAQLGKPAEGLNFLRRAMET---NTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLAD 328 (389)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHc---cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhcc
Confidence 777778888888888888888887763 344444455555444444445555444 3446677777776666654322
Q ss_pred cCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHHhCCCcCCCceeEEEeCCEEEE
Q 046194 744 NCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMKEAEVKKEAGCSWVTMKDGVHV 814 (934)
Q Consensus 744 ~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~ 814 (934)
++.|++.+...+++.|....++..|.+.-...+-..|.
T Consensus 329 ---------------------------------aeeg~~k~sL~~lr~mvge~l~~~~~YRC~~CGF~a~~ 366 (389)
T COG2956 329 ---------------------------------AEEGRAKESLDLLRDMVGEQLRRKPRYRCQNCGFTAHT 366 (389)
T ss_pred ---------------------------------ccccchhhhHHHHHHHHHHHHhhcCCceecccCCccee
Confidence 12355777777777777666666665444444434443
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.2e-08 Score=104.00 Aligned_cols=436 Identities=11% Similarity=0.096 Sum_probs=271.4
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHH-HHhhccCchHHHHHHHHHHhhhCCCCch----hHHHHHHHHH
Q 046194 328 MISGLDQNGCYEEAIMNFCAMRRDGLMSSNFSLISTL-SSCASLGWIMLGQQIHGEGLKLGLDSDV----SVSNALLSLY 402 (934)
Q Consensus 328 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~a~~~~~~~~~a~~i~~~~~~~g~~~~~----~~~~~li~~y 402 (934)
|..-|..+....+|+..|+-..+...-|+.-.+..-+ ..+.+...+..|...+...+..-...+. .+.+.+.-.+
T Consensus 207 laqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtf 286 (840)
T KOG2003|consen 207 LAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTF 286 (840)
T ss_pred HHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeE
Confidence 3445666777788888888887777777765433222 2334556677777777777665332222 2344455567
Q ss_pred HhcCChHHHHHHHhhCCC--CCccc-hHHHHHHHHhCCccHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhccCCchHHH
Q 046194 403 ADAGYLSRCLKVFFLMPE--HDQVS-WNSVIGAFADSEALVSEAVKYYLDMRRAGWSPNGVTFINILAAASSFSMGKLGH 479 (934)
Q Consensus 403 ~~~g~~~~A~~~f~~~~~--~~~~~-~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~ 479 (934)
.+.|.+++|...|+...+ ||..+ +|..|-++ --|+. ++..+.|.+|..-...||..-|. +.
T Consensus 287 iq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f-~i~d~-ekmkeaf~kli~ip~~~dddkyi-------~~------- 350 (840)
T KOG2003|consen 287 IQAGQYDDAINSFDHCMEEAPNFIAALNLIICAF-AIGDA-EKMKEAFQKLIDIPGEIDDDKYI-------KE------- 350 (840)
T ss_pred EecccchhhHhhHHHHHHhCccHHhhhhhhhhhe-ecCcH-HHHHHHHHHHhcCCCCCCccccc-------CC-------
Confidence 888999999999987654 55554 55444444 45676 88888899998766666665441 00
Q ss_pred HHHHHHHHhcCCCchhHHHHH-----HHHHHhcCCHHHHHHHHH---hhccC---CCcc---hHH---------------
Q 046194 480 QVHAQVIKYNVANETTIENAL-----LSCYGKCGEMDDCEKIFA---RMSER---RDEV---SWN--------------- 530 (934)
Q Consensus 480 ~i~~~~~~~g~~~~~~~~~~l-----i~~~~~~g~~~~A~~~~~---~~~~~---p~~~---~~~--------------- 530 (934)
.-.|+....|.- +.-..+..+ ..|++..- .+... ||-. -|.
T Consensus 351 ---------~ddp~~~ll~eai~nd~lk~~ek~~k-a~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~d 420 (840)
T KOG2003|consen 351 ---------KDDPDDNLLNEAIKNDHLKNMEKENK-ADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAID 420 (840)
T ss_pred ---------cCCcchHHHHHHHhhHHHHHHHHhhh-hhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhh
Confidence 001111111111 111111111 11111111 11110 1110 011
Q ss_pred ---HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHH--HHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHH
Q 046194 531 ---SMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFA--TVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVDM 605 (934)
Q Consensus 531 ---~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~--~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~ 605 (934)
.-..-|.++|+++.|++++.-+.+..-+.-+..-+ ..+.-...-.++..|.++-+.++... .-++...+.-.+.
T Consensus 421 lei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~ 499 (840)
T KOG2003|consen 421 LEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNI 499 (840)
T ss_pred hhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCce
Confidence 11234788999999999998877654333222222 22222223345666666666554321 0112221112223
Q ss_pred HHhcCCHHHHHHHhccCCCCCcccccHHH---HHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHHH
Q 046194 606 YSKCGRIDYASRFFDLMPVRNVYSWNSMI---SGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGF 682 (934)
Q Consensus 606 y~~~g~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 682 (934)
-...|+++.|.+.+.+....|...-.+|. -.+-..|+.++|++.|-++..- +..+...+..+.+.|....+...|+
T Consensus 500 ~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqai 578 (840)
T KOG2003|consen 500 AFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAI 578 (840)
T ss_pred eeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHH
Confidence 34579999999999999877766433333 3466789999999999887652 2344566777788899999999999
Q ss_pred HHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHh
Q 046194 683 KHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCRANCRKTELGRKAANMLFE 760 (934)
Q Consensus 683 ~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~ 760 (934)
+++.+... -++-|+...+-|.++|-+.|+-..|.+..-+. ..-| +..+..-|...|... .-.+.+...++++.-
T Consensus 579 e~~~q~~s--lip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidt--qf~ekai~y~ekaal 654 (840)
T KOG2003|consen 579 ELLMQANS--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDT--QFSEKAINYFEKAAL 654 (840)
T ss_pred HHHHHhcc--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhh--HHHHHHHHHHHHHHh
Confidence 99877754 24444889999999999999999999876554 4333 444444455555555 678999999999999
Q ss_pred cCCCCCchHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 046194 761 MEPQNAVNYVLLANMYASGGKWEDVAKARKAMKEA 795 (934)
Q Consensus 761 ~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~ 795 (934)
+.|....--..++..+.+.|++..|.++++...++
T Consensus 655 iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 655 IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 99987777778888999999999999999988754
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.22 E-value=7.5e-11 Score=124.10 Aligned_cols=191 Identities=14% Similarity=0.102 Sum_probs=83.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhccC-CCcchHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCCHhHHHHHHHHHhc
Q 046194 496 IENALLSCYGKCGEMDDCEKIFARMSER-RDEVSWNSMISGYIHNELLPKAMNLVWFMMQRG-QRLDHFTFATVLSACAS 573 (934)
Q Consensus 496 ~~~~li~~~~~~g~~~~A~~~~~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~ 573 (934)
.+..++.. ...+++++|.+++...-++ ++...+..++..+.+.++++++..++.+..... .+++...|......+.+
T Consensus 80 ~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~ 158 (280)
T PF13429_consen 80 DYERLIQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQ 158 (280)
T ss_dssp ---------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHH
T ss_pred cccccccc-cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHH
Confidence 33445554 5666777777666654333 355566666777777777777777777765432 23445555566666666
Q ss_pred hhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCC---CCCcccccHHHHHHHHcCChHHHHHHH
Q 046194 574 VATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMP---VRNVYSWNSMISGYARHGHGDKALTLF 650 (934)
Q Consensus 574 ~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~ 650 (934)
.|+.++|...++.+++.... |..+.+.++..+...|+.+++.++++... ..|...|..+..+|...|++++|+..|
T Consensus 159 ~G~~~~A~~~~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~ 237 (280)
T PF13429_consen 159 LGDPDKALRDYRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYL 237 (280)
T ss_dssp CCHHHHHHHHHHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccc
Confidence 77777777777776664322 45566667777777777776666555443 345566777777777777777777777
Q ss_pred HHHHHCCCCCChhhHHHHHHHHHhhCcHHHHHHHHHHhH
Q 046194 651 SQMKLDGPLPDHVTFVGVLSACSHAGLVDEGFKHFKSMS 689 (934)
Q Consensus 651 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 689 (934)
++..+.. +.|..+...+..++...|+.++|..+..+..
T Consensus 238 ~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 238 EKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHS-TT-HHHHHHHHHHHT----------------
T ss_pred ccccccc-ccccccccccccccccccccccccccccccc
Confidence 7776642 2245556666667777777777777666554
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.2e-11 Score=89.26 Aligned_cols=50 Identities=34% Similarity=0.696 Sum_probs=48.3
Q ss_pred CCcccHHHHHHHHHcCCCchHHHHHHHHHHHccCCCCCCCCceeHHHHHHHHhc
Q 046194 153 RDLISWNSIISVYSQRGDTISVFKLFSRMQREGFRYSLKPNEYTFGSLITAAYS 206 (934)
Q Consensus 153 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~p~~~t~~~ll~a~~~ 206 (934)
||+++||++|.+|++.|++++|+++|++|.+.|+ +||..||+++|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~----~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGI----KPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHHcC
Confidence 7999999999999999999999999999999999 9999999999999874
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.17 E-value=5.8e-11 Score=86.98 Aligned_cols=50 Identities=28% Similarity=0.513 Sum_probs=48.1
Q ss_pred CCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhc
Q 046194 524 RDEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACAS 573 (934)
Q Consensus 524 p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 573 (934)
||+++||++|.+|++.|++++|+++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 79999999999999999999999999999999999999999999999874
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.1e-07 Score=96.06 Aligned_cols=390 Identities=11% Similarity=0.065 Sum_probs=260.7
Q ss_pred CChHHHHHHHhhCCC---CCccchHHHHHHHHhCCccHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhccCCchHHHHHH
Q 046194 406 GYLSRCLKVFFLMPE---HDQVSWNSVIGAFADSEALVSEAVKYYLDMRRAGWSPNGVTFINILAAASSFSMGKLGHQVH 482 (934)
Q Consensus 406 g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~ 482 (934)
+++..|..+|++... +++..|---+..=.++... ..|..++++.+..-...|..- ---+..=-.+|++..|+++|
T Consensus 87 ~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~v-NhARNv~dRAvt~lPRVdqlW-yKY~ymEE~LgNi~gaRqif 164 (677)
T KOG1915|consen 87 KEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQV-NHARNVWDRAVTILPRVDQLW-YKYIYMEEMLGNIAGARQIF 164 (677)
T ss_pred HHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhH-hHHHHHHHHHHHhcchHHHHH-HHHHHHHHHhcccHHHHHHH
Confidence 344444445444433 2333444444444444444 555555554443222222211 12222234467777888887
Q ss_pred HHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhcc-CCCcchHHHHHHHHHhcCChhHHHHHHHHHHHc-CC-CC
Q 046194 483 AQVIKYNVANETTIENALLSCYGKCGEMDDCEKIFARMSE-RRDEVSWNSMISGYIHNELLPKAMNLVWFMMQR-GQ-RL 559 (934)
Q Consensus 483 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~-~p 559 (934)
..-.+ ..|+...|.+.|+.=.+-..++.|..++++..- .|++.+|--...--.++|+...|..+|....+. |- ..
T Consensus 165 erW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~ 242 (677)
T KOG1915|consen 165 ERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEE 242 (677)
T ss_pred HHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHH
Confidence 76554 468888889999998899999999999988755 478888888888788889988888888877653 11 11
Q ss_pred CHhHHHHHHHHHhchhhHHHHHHHHHHHHHhCCCC-cHhHHHHHHHHHHhcCCHHHHHHHh---cc-----CCCC---Cc
Q 046194 560 DHFTFATVLSACASVATLERGMEVHACGVRACLEF-DVVIGSALVDMYSKCGRIDYASRFF---DL-----MPVR---NV 627 (934)
Q Consensus 560 ~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~-~~~~~~~li~~y~~~g~~~~A~~~~---~~-----~~~~---~~ 627 (934)
+...|+++..-=.+...++.|.-++..++..=... ....|..+...--+-|+......+. .. +... |.
T Consensus 243 ~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nY 322 (677)
T KOG1915|consen 243 AEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNY 322 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCc
Confidence 22334444333445677888999998888752221 2455555555444556543333222 22 2222 55
Q ss_pred ccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhh-------HHHHHHHH---HhhCcHHHHHHHHHHhHHhhCCCCC
Q 046194 628 YSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVT-------FVGVLSAC---SHAGLVDEGFKHFKSMSQVYGLIPQ 697 (934)
Q Consensus 628 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-------~~~ll~a~---~~~g~~~~a~~~~~~m~~~~~~~p~ 697 (934)
.+|--.+..--..|+.+...++|++.+.. ++|-..- |.-+=-+| ....+++.+.++|+...+ +.|.
T Consensus 323 DsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~---lIPH 398 (677)
T KOG1915|consen 323 DSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD---LIPH 398 (677)
T ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh---hcCc
Confidence 57777777777889999999999999875 5663211 11111122 357789999999998876 5555
Q ss_pred -cccHHHHHHH----HhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHH
Q 046194 698 -LEQFSCMVDL----LGRAGELDKIEEFINKM-PITPNSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVL 771 (934)
Q Consensus 698 -~~~y~~li~~----l~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~ 771 (934)
..+++-+=-+ ..|+-++..|.+.+... |.-|-..+|...+..=.+. ++++....++++.++-.|.|..++..
T Consensus 399 kkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL--~efDRcRkLYEkfle~~Pe~c~~W~k 476 (677)
T KOG1915|consen 399 KKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQL--REFDRCRKLYEKFLEFSPENCYAWSK 476 (677)
T ss_pred ccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHH--hhHHHHHHHHHHHHhcChHhhHHHHH
Confidence 5666655444 45788999999999876 8899999999999888888 99999999999999999999999999
Q ss_pred HHHHHHcCCChHHHHHHHHHHHhCCCcCCCceeE
Q 046194 772 LANMYASGGKWEDVAKARKAMKEAEVKKEAGCSW 805 (934)
Q Consensus 772 l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 805 (934)
.+.+-...|+++.|..+++...++...-.|..-|
T Consensus 477 yaElE~~LgdtdRaRaifelAi~qp~ldmpellw 510 (677)
T KOG1915|consen 477 YAELETSLGDTDRARAIFELAISQPALDMPELLW 510 (677)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHH
Confidence 9999999999999999999887766544444333
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.6e-06 Score=91.50 Aligned_cols=498 Identities=14% Similarity=0.146 Sum_probs=278.7
Q ss_pred cchhHHHHHHHhcCChHHHHHHHHHhhhcccchhhhhhhhhhhhhHHHHHHHHHcCCCchhHHHHHHHHhhccCChhHHH
Q 046194 232 YVGSALVSGFARLGNFYYARKIFEQMIQKNVVSMNGLMEGRRKGKEVHGYLIRSGLFDMVAVGNGLVNMYAKCGTIDDSR 311 (934)
Q Consensus 232 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 311 (934)
..|-..+....+.|++...+..|++....=+++- ...+|...+......|-++.+.
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtq------------------------H~rIW~lyl~Fv~~~~lPets~ 158 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQ------------------------HDRIWDLYLKFVESHGLPETSI 158 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHh------------------------hccchHHHHHHHHhCCChHHHH
Confidence 3455666667777777777777777654322221 1123334444444555556666
Q ss_pred HHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCC------CCCChhhHHHHHHHhhccCchHHHHHHHHHHhh
Q 046194 312 SVFRFMIGKDSVSWNTMISGLDQNGCYEEAIMNFCAMRRDG------LMSSNFSLISTLSSCASLGWIMLGQQIHGEGLK 385 (934)
Q Consensus 312 ~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g------~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~ 385 (934)
+++++..+-++..-+--|..++..+++++|-+.+....... .+.+...|.-+-...++..+.-....+ +.+++
T Consensus 159 rvyrRYLk~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnv-daiiR 237 (835)
T KOG2047|consen 159 RVYRRYLKVAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNV-DAIIR 237 (835)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCH-HHHHH
Confidence 66666555555555566666666666666666665554321 112222333333333333222211111 11222
Q ss_pred hCC--CCc--hhHHHHHHHHHHhcCChHHHHHHHhhCCCC--CccchHHHHHHHHhCCcc--------------------
Q 046194 386 LGL--DSD--VSVSNALLSLYADAGYLSRCLKVFFLMPEH--DQVSWNSVIGAFADSEAL-------------------- 439 (934)
Q Consensus 386 ~g~--~~~--~~~~~~li~~y~~~g~~~~A~~~f~~~~~~--~~~~~~~li~~~~~~g~~-------------------- 439 (934)
.|+ -+| ...|++|.+.|.+.|.++.|..+|++.... .+.-|+.+..+|++-...
T Consensus 238 ~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~ 317 (835)
T KOG2047|consen 238 GGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDV 317 (835)
T ss_pred hhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhh
Confidence 222 223 246788888888888888888888765432 223344444444332111
Q ss_pred -HHHHHHHHHHHHHcC-C-------CCCcccHHHHH-HHHhccCCchHHHHHHHHHHHhcCC-----CchhHHHHHHHHH
Q 046194 440 -VSEAVKYYLDMRRAG-W-------SPNGVTFINIL-AAASSFSMGKLGHQVHAQVIKYNVA-----NETTIENALLSCY 504 (934)
Q Consensus 440 -~~~A~~l~~~m~~~g-~-------~p~~~t~~~ll-~a~~~~~~~~~a~~i~~~~~~~g~~-----~~~~~~~~li~~~ 504 (934)
++-.+.-|+.+...+ + .-|.......+ +.-...|+..+....+.++++.--+ .-...|..+.+.|
T Consensus 318 dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklY 397 (835)
T KOG2047|consen 318 DLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLY 397 (835)
T ss_pred hHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHH
Confidence 011222222222211 0 00111111111 1111234445555566666553111 1234678899999
Q ss_pred HhcCCHHHHHHHHHhhccCC--C----cchHHHHHHHHHhcCChhHHHHHHHHHHHcCC----------CC-------CH
Q 046194 505 GKCGEMDDCEKIFARMSERR--D----EVSWNSMISGYIHNELLPKAMNLVWFMMQRGQ----------RL-------DH 561 (934)
Q Consensus 505 ~~~g~~~~A~~~~~~~~~~p--~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~----------~p-------~~ 561 (934)
-..|+++.|+.+|++...-| . ...|..-...-.++.+++.|+++.+.....-- .| +.
T Consensus 398 e~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSl 477 (835)
T KOG2047|consen 398 ENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSL 477 (835)
T ss_pred HhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhH
Confidence 99999999999999988753 2 23466666666778899999998877653211 11 12
Q ss_pred hHHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCC----CCCcc-cccHHHHH
Q 046194 562 FTFATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMP----VRNVY-SWNSMISG 636 (934)
Q Consensus 562 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~----~~~~~-~~~~li~~ 636 (934)
..|+..++.--..|-++..+.+++.++...+.....+.| ..-.+-...-++++.+++++-. -|++. .|+.-+.-
T Consensus 478 kiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~N-yAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtk 556 (835)
T KOG2047|consen 478 KIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIIN-YAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTK 556 (835)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHH-HHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHH
Confidence 334444444556678888889999998876653332222 2223455667899999998765 35554 78877666
Q ss_pred HHH---cCChHHHHHHHHHHHHCCCCCChhhHHHHHHH-H-HhhCcHHHHHHHHHHhHH--------------------h
Q 046194 637 YAR---HGHGDKALTLFSQMKLDGPLPDHVTFVGVLSA-C-SHAGLVDEGFKHFKSMSQ--------------------V 691 (934)
Q Consensus 637 ~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a-~-~~~g~~~~a~~~~~~m~~--------------------~ 691 (934)
+.+ .-..+.|..+|++..+ |.+|...-+..|+-| + ..-|....|+.++++... .
T Consensus 557 fi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~ 635 (835)
T KOG2047|consen 557 FIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEI 635 (835)
T ss_pred HHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 554 2358999999999999 677775443334333 2 345788888888877654 2
Q ss_pred hCCCCCcccHHHH----------------HHHHhhcCChHHHHHHHHhC-C-CCC--CHHHHHHHHHHHHhccCCCcHHH
Q 046194 692 YGLIPQLEQFSCM----------------VDLLGRAGELDKIEEFINKM-P-ITP--NSLIWRTVLGACCRANCRKTELG 751 (934)
Q Consensus 692 ~~~~p~~~~y~~l----------------i~~l~~~g~~~~A~~~~~~m-~-~~p--~~~~~~~ll~~~~~~~~~~~~~a 751 (934)
||+.-+...|.-- .++=++.|..+.|..++.-. . ..| +...|.+.-.-=.+| ||-+.-
T Consensus 636 yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrH--GnedT~ 713 (835)
T KOG2047|consen 636 YGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRH--GNEDTY 713 (835)
T ss_pred hCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhc--CCHHHH
Confidence 4554444444432 23335668888888887655 1 233 566788887777788 885555
Q ss_pred HHHHHHH
Q 046194 752 RKAANML 758 (934)
Q Consensus 752 ~~~~~~~ 758 (934)
+.+.+.-
T Consensus 714 keMLRik 720 (835)
T KOG2047|consen 714 KEMLRIK 720 (835)
T ss_pred HHHHHHH
Confidence 5554433
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.7e-09 Score=109.28 Aligned_cols=197 Identities=13% Similarity=0.069 Sum_probs=163.0
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHhccCCC--C-CcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 046194 595 DVVIGSALVDMYSKCGRIDYASRFFDLMPV--R-NVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSA 671 (934)
Q Consensus 595 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 671 (934)
....+..+...|...|++++|.+.|++... | +...+..+...|...|++++|++.|++..+.. +.+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 456677788899999999999999987653 3 45578888889999999999999999998853 2345567777888
Q ss_pred HHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCcH
Q 046194 672 CSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCRANCRKTE 749 (934)
Q Consensus 672 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~ 749 (934)
+...|++++|.+.|+...+..........+..+...+.+.|++++|.+.+++. ...| +...|..+...+... |+.+
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~--~~~~ 186 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLR--GQYK 186 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHc--CCHH
Confidence 99999999999999999873222223556778899999999999999999887 4444 456788888888888 9999
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHHh
Q 046194 750 LGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 750 ~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 794 (934)
.|...++++.+..|.++..+..++.++...|++++|..+.+.+..
T Consensus 187 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 187 DARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 999999999999898888999999999999999999998887764
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.8e-06 Score=91.04 Aligned_cols=257 Identities=14% Similarity=0.157 Sum_probs=153.3
Q ss_pred HHHhcCCHHHHHHHHHhhccCCCcc--hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhchhhHHHH
Q 046194 503 CYGKCGEMDDCEKIFARMSERRDEV--SWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVATLERG 580 (934)
Q Consensus 503 ~~~~~g~~~~A~~~~~~~~~~p~~~--~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a 580 (934)
+-.....+.+|..+++.+..+ ++. -|..+..-|+..|+++.|.++|.+.- .++-.|..|.+.|.++.|
T Consensus 741 aai~akew~kai~ildniqdq-k~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da 810 (1636)
T KOG3616|consen 741 AAIGAKEWKKAISILDNIQDQ-KTASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDA 810 (1636)
T ss_pred HHhhhhhhhhhHhHHHHhhhh-ccccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHH
Confidence 334445566666666655554 222 23444455666666666666654321 233345556666666665
Q ss_pred HHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCCCCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 046194 581 MEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPVRNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLP 660 (934)
Q Consensus 581 ~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 660 (934)
.++-.+. .|.+..+..|-+-..-+-+.|++.+|.+++-.+..|+. .|..|-++|..+..+++.++- .|
T Consensus 811 ~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~-----h~ 878 (1636)
T KOG3616|consen 811 FKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKH-----HG 878 (1636)
T ss_pred HHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHh-----Ch
Confidence 5544332 12233444555555556778888888888888877765 477888888888888877653 44
Q ss_pred C--hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhCCCC-C---CHHHHH
Q 046194 661 D--HVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKMPIT-P---NSLIWR 734 (934)
Q Consensus 661 ~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~~~-p---~~~~~~ 734 (934)
| ..|...+..-+...|++..|..-|-+... |.+-+++|-..+.|++|..+-+.-+-. . -...|.
T Consensus 879 d~l~dt~~~f~~e~e~~g~lkaae~~flea~d----------~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwa 948 (1636)
T KOG3616|consen 879 DHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD----------FKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWA 948 (1636)
T ss_pred hhhhHHHHHHHHHHHhccChhHHHHHHHhhhh----------HHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHH
Confidence 4 35666677778888888888887765543 567788888888888888887665211 1 112231
Q ss_pred H------HHHHHHhccCCCcHHHHHH------HHHHHhc-----CCCCCchHHHHHHHHHcCCChHHHHHHHHHHH
Q 046194 735 T------VLGACCRANCRKTELGRKA------ANMLFEM-----EPQNAVNYVLLANMYASGGKWEDVAKARKAMK 793 (934)
Q Consensus 735 ~------ll~~~~~~~~~~~~~a~~~------~~~~~~~-----~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~ 793 (934)
- -...+.++ |-++.|... ++-++++ ...-+..+..++.-+-..|++++|.+-+-+..
T Consensus 949 ksiggdaavkllnk~--gll~~~id~a~d~~afd~afdlari~~k~k~~~vhlk~a~~ledegk~edaskhyveai 1022 (1636)
T KOG3616|consen 949 KSIGGDAAVKLLNKH--GLLEAAIDFAADNCAFDFAFDLARIAAKDKMGEVHLKLAMFLEDEGKFEDASKHYVEAI 1022 (1636)
T ss_pred HhhCcHHHHHHHHhh--hhHHHHhhhhhcccchhhHHHHHHHhhhccCccchhHHhhhhhhccchhhhhHhhHHHh
Confidence 1 12223334 444444431 1222221 23345677888888999999999976655443
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.7e-08 Score=108.89 Aligned_cols=244 Identities=16% Similarity=0.167 Sum_probs=161.3
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhhccC---------CCcch-HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhH
Q 046194 494 TTIENALLSCYGKCGEMDDCEKIFARMSER---------RDEVS-WNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFT 563 (934)
Q Consensus 494 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---------p~~~~-~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 563 (934)
..+...|..+|...|+++.|..+|....+. |.+.+ .+.+...|...+++++|..+|.++..-
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i-------- 270 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTI-------- 270 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH--------
Confidence 345555777888888888888887765442 11111 122334455555666666555555431
Q ss_pred HHHHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCCCCcccccHHHHHHHHcCCh
Q 046194 564 FATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPVRNVYSWNSMISGYARHGHG 643 (934)
Q Consensus 564 ~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~ 643 (934)
.........+.-..+++.|..+|.+.|++++|...+
T Consensus 271 --------------------~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~------------------------ 306 (508)
T KOG1840|consen 271 --------------------REEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYC------------------------ 306 (508)
T ss_pred --------------------HHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHH------------------------
Confidence 000000011112445666777888999998888866
Q ss_pred HHHHHHHHHHHHCCCC-CCh-hhHHHHHHHHHhhCcHHHHHHHHHHhHHhhC--CCCC----cccHHHHHHHHhhcCChH
Q 046194 644 DKALTLFSQMKLDGPL-PDH-VTFVGVLSACSHAGLVDEGFKHFKSMSQVYG--LIPQ----LEQFSCMVDLLGRAGELD 715 (934)
Q Consensus 644 ~~A~~l~~~m~~~g~~-p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~--~~p~----~~~y~~li~~l~~~g~~~ 715 (934)
++|++++++ ..|.. |.. .-++.+...|...+.+++|..+++...+.+. ..++ ..+|+.|..+|-..|+++
T Consensus 307 e~Al~I~~~--~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ 384 (508)
T KOG1840|consen 307 ERALEIYEK--LLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYK 384 (508)
T ss_pred HHHHHHHHH--hhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchh
Confidence 456777777 22222 332 2366666678899999999999888776544 2222 467899999999999999
Q ss_pred HHHHHHHhC---------CCCCC-HHHHHHHHHHHHhccCCCcHHHHHHHHHHHhc----CCCC---CchHHHHHHHHHc
Q 046194 716 KIEEFINKM---------PITPN-SLIWRTVLGACCRANCRKTELGRKAANMLFEM----EPQN---AVNYVLLANMYAS 778 (934)
Q Consensus 716 ~A~~~~~~m---------~~~p~-~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~----~p~~---~~~y~~l~~~~~~ 778 (934)
+|.+++++. +..+. ...++.|..+|... ++.+.|.+.+.....+ .|+. ...|..|+-+|.+
T Consensus 385 ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~--k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~ 462 (508)
T KOG1840|consen 385 EAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEEL--KKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRA 462 (508)
T ss_pred HHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHh--cccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHH
Confidence 999999876 12232 44677888888888 8888888888765543 3444 4468899999999
Q ss_pred CCChHHHHHHHHHHH
Q 046194 779 GGKWEDVAKARKAMK 793 (934)
Q Consensus 779 ~g~~~~a~~~~~~m~ 793 (934)
.|++++|.++.....
T Consensus 463 ~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 463 QGNYEAAEELEEKVL 477 (508)
T ss_pred cccHHHHHHHHHHHH
Confidence 999999999877664
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.04 E-value=1e-06 Score=89.65 Aligned_cols=301 Identities=9% Similarity=-0.017 Sum_probs=207.2
Q ss_pred CCCcccHHHHHHHHhc--cCCchHHHHHHHHHH-HhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccCCCcchHH--
Q 046194 456 SPNGVTFINILAAASS--FSMGKLGHQVHAQVI-KYNVANETTIENALLSCYGKCGEMDDCEKIFARMSERRDEVSWN-- 530 (934)
Q Consensus 456 ~p~~~t~~~ll~a~~~--~~~~~~a~~i~~~~~-~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~-- 530 (934)
.|...+....+.+++. .++-..+.+.+..+. ..-++.+.....++.+.|...|+.++|...|++...- |..+..
T Consensus 191 ~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~-dpy~i~~M 269 (564)
T KOG1174|consen 191 PDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA-NPDNVEAM 269 (564)
T ss_pred CCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC-ChhhhhhH
Confidence 3444444445555443 344444445554443 3456677788899999999999999999999988765 333222
Q ss_pred -HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhc
Q 046194 531 -SMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKC 609 (934)
Q Consensus 531 -~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~ 609 (934)
...-.+.+.|+.++-..+...+.... +-....|..-....-...+++.|+.+-+..++.... ++..+-.-...+...
T Consensus 270 D~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~ 347 (564)
T KOG1174|consen 270 DLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIAL 347 (564)
T ss_pred HHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhc
Confidence 22233567888888888777776532 112222222233334566777888777777664321 233333333556778
Q ss_pred CCHHHHHHHhccCC--C-CCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHH-HHHH-hhCcHHHHHHH
Q 046194 610 GRIDYASRFFDLMP--V-RNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVL-SACS-HAGLVDEGFKH 684 (934)
Q Consensus 610 g~~~~A~~~~~~~~--~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll-~a~~-~~g~~~~a~~~ 684 (934)
|+.++|.--|.... . -+..+|.-|+.+|...|++.+|..+-+..... +.-+..+...+. ..|. ....-++|.++
T Consensus 348 ~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf 426 (564)
T KOG1174|consen 348 ERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKF 426 (564)
T ss_pred cchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHH
Confidence 99999998888654 3 47789999999999999999999888876653 233455554332 2332 33446788888
Q ss_pred HHHhHHhhCCCCC-cccHHHHHHHHhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcC
Q 046194 685 FKSMSQVYGLIPQ-LEQFSCMVDLLGRAGELDKIEEFINKM-PITPNSLIWRTVLGACCRANCRKTELGRKAANMLFEME 762 (934)
Q Consensus 685 ~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~ 762 (934)
+++-.+ +.|+ ....+.+...+.+.|+.+++..++++. ...||...-+.|...++.. +.++.+...+..++.++
T Consensus 427 ~ek~L~---~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~--Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 427 AEKSLK---INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQ--NEPQKAMEYYYKALRQD 501 (564)
T ss_pred HHhhhc---cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHh--hhHHHHHHHHHHHHhcC
Confidence 887754 6787 667778888999999999999999886 7788988888999998888 89999999999999999
Q ss_pred CCC
Q 046194 763 PQN 765 (934)
Q Consensus 763 p~~ 765 (934)
|+|
T Consensus 502 P~~ 504 (564)
T KOG1174|consen 502 PKS 504 (564)
T ss_pred ccc
Confidence 987
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.5e-07 Score=92.82 Aligned_cols=185 Identities=13% Similarity=0.119 Sum_probs=109.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhccCCCcchHHH--------HHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 046194 498 NALLSCYGKCGEMDDCEKIFARMSERRDEVSWNS--------MISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLS 569 (934)
Q Consensus 498 ~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~--------li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 569 (934)
..|+..|-+..++++|.++-+++..- +...++. +...+....+.+.|..++.+..+.. |+
T Consensus 145 qqLl~IYQ~treW~KAId~A~~L~k~-~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~--~~--------- 212 (389)
T COG2956 145 QQLLNIYQATREWEKAIDVAERLVKL-GGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQAD--KK--------- 212 (389)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHc-CCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhC--cc---------
Confidence 46788899999999999998877664 3333433 3344444556666666666655432 22
Q ss_pred HHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCCCCcc----cccHHHHHHHHcCChHH
Q 046194 570 ACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPVRNVY----SWNSMISGYARHGHGDK 645 (934)
Q Consensus 570 a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~----~~~~li~~~~~~g~~~~ 645 (934)
.+...-.+.+.+...|+++.|.+.++.+.+.|.. +...|..+|.+.|+.++
T Consensus 213 -------------------------cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~ 267 (389)
T COG2956 213 -------------------------CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAE 267 (389)
T ss_pred -------------------------ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHH
Confidence 2222233455566667777777777766644432 45567778888888888
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHh---hcCChHHHHHHHH
Q 046194 646 ALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLG---RAGELDKIEEFIN 722 (934)
Q Consensus 646 A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~---~~g~~~~A~~~~~ 722 (934)
.+..+.++.+....++ .-..+-.--....-.+.|..+..+-.. -+|+...+..+++.-. ..|+..+.+.+++
T Consensus 268 ~~~fL~~~~~~~~g~~--~~l~l~~lie~~~G~~~Aq~~l~~Ql~---r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr 342 (389)
T COG2956 268 GLNFLRRAMETNTGAD--AELMLADLIELQEGIDAAQAYLTRQLR---RKPTMRGFHRLMDYHLADAEEGRAKESLDLLR 342 (389)
T ss_pred HHHHHHHHHHccCCcc--HHHHHHHHHHHhhChHHHHHHHHHHHh---hCCcHHHHHHHHHhhhccccccchhhhHHHHH
Confidence 8888888777433333 222232222222334445444433332 3588777777777653 2345566666666
Q ss_pred hC
Q 046194 723 KM 724 (934)
Q Consensus 723 ~m 724 (934)
+|
T Consensus 343 ~m 344 (389)
T COG2956 343 DM 344 (389)
T ss_pred HH
Confidence 66
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.5e-07 Score=93.20 Aligned_cols=285 Identities=11% Similarity=0.019 Sum_probs=158.1
Q ss_pred CccHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 046194 437 EALVSEAVKYYLDMRRAGWSPNGVTFINILAAASSFSMGKLGHQVHAQVIKYNVANETTIENALLSCYGKCGEMDDCEKI 516 (934)
Q Consensus 437 g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 516 (934)
|++ .+|.++..+-.+.+-.| ...|.....+....|+.+.+.+...++.+..-.++..+.-+........|+.+.|..-
T Consensus 98 G~~-~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 98 GDF-QQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred CcH-HHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 555 66666666544443322 2334444555666677777777777766665556666666777777778888888777
Q ss_pred HHhhccC-C-CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhchhhHHHHHHHHHHHHHhCCCC
Q 046194 517 FARMSER-R-DEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVATLERGMEVHACGVRACLEF 594 (934)
Q Consensus 517 ~~~~~~~-p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~ 594 (934)
.+++.+. | +.........+|.+.|++.+.+.++.+|.+.|+--|+..-..
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~l---------------------------- 227 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARL---------------------------- 227 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHH----------------------------
Confidence 7766553 2 566677777888888888888888888887775444321000
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHhccCC---CCCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 046194 595 DVVIGSALVDMYSKCGRIDYASRFFDLMP---VRNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSA 671 (934)
Q Consensus 595 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 671 (934)
...+++.+++-....+..+.-...++..+ +.++..-.+++.-+.+.|+.++|.++.++..+.+..|. ...+-.
T Consensus 228 e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~ 303 (400)
T COG3071 228 EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIP 303 (400)
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHh
Confidence 11122222222222222222233344433 12333334455555556666666666666666554444 112223
Q ss_pred HHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhccCCCcHH
Q 046194 672 CSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKM-PITPNSLIWRTVLGACCRANCRKTEL 750 (934)
Q Consensus 672 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~~~~~~~~ 750 (934)
+.+-++...=++..+...+.++..| ..+.+|...|.+.+.|.+|.+.|+.. +..|+..+|.-+..++-.. |+.+.
T Consensus 304 ~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~--g~~~~ 379 (400)
T COG3071 304 RLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQL--GEPEE 379 (400)
T ss_pred hcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHc--CChHH
Confidence 4455555555555555555433333 44555666666666666666666544 5556666666565555555 55555
Q ss_pred HHHHHHHHH
Q 046194 751 GRKAANMLF 759 (934)
Q Consensus 751 a~~~~~~~~ 759 (934)
|....+..+
T Consensus 380 A~~~r~e~L 388 (400)
T COG3071 380 AEQVRREAL 388 (400)
T ss_pred HHHHHHHHH
Confidence 555555444
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.1e-06 Score=93.27 Aligned_cols=441 Identities=11% Similarity=0.067 Sum_probs=255.6
Q ss_pred cCCCchhHHHHHHHHhhccCChhHHHHHHhcCCCC---CcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHH
Q 046194 286 GLFDMVAVGNGLVNMYAKCGTIDDSRSVFRFMIGK---DSVSWNTMISGLDQNGCYEEAIMNFCAMRRDGLMSSNFSLIS 362 (934)
Q Consensus 286 g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 362 (934)
.+..|..+|..|.-+...+|+++.+.+.|++...- ....|+.+-..|...|.-..|+.+++.-....-.|+..+-..
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 45678999999999999999999999999887542 456899999999999999999999988766443354444433
Q ss_pred HH-HHhh-ccCchHHHHHHHHHHhhhC--C--CCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCccchHHHHHHHHhC
Q 046194 363 TL-SSCA-SLGWIMLGQQIHGEGLKLG--L--DSDVSVSNALLSLYADAGYLSRCLKVFFLMPEHDQVSWNSVIGAFADS 436 (934)
Q Consensus 363 ll-~a~~-~~~~~~~a~~i~~~~~~~g--~--~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~ 436 (934)
+. +-|. +.+..+++...-..++... . ......+-.+.-+|...-. ...++.- +.
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~--------------~a~~~se------R~ 457 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQAR--------------QANLKSE------RD 457 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhh--------------cCCChHH------HH
Confidence 33 3343 4455566555554444411 1 0111222222222221100 0001100 00
Q ss_pred CccHHHHHHHHHHHHHcC-CCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHH
Q 046194 437 EALVSEAVKYYLDMRRAG-WSPNGVTFINILAAASSFSMGKLGHQVHAQVIKYNVANETTIENALLSCYGKCGEMDDCEK 515 (934)
Q Consensus 437 g~~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 515 (934)
... .++++.+++..+.+ -.|+...|.++- ++-.++++.|.+...+..+.+-..+...|..|.-.+...+++.+|+.
T Consensus 458 ~~h-~kslqale~av~~d~~dp~~if~lalq--~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~ 534 (799)
T KOG4162|consen 458 ALH-KKSLQALEEAVQFDPTDPLVIFYLALQ--YAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALD 534 (799)
T ss_pred HHH-HHHHHHHHHHHhcCCCCchHHHHHHHH--HHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHH
Confidence 111 67788888877643 445555554443 44567788888888888888777788888888888888888888888
Q ss_pred HHHhhccC-C-CcchHHHHHHHHHhcCChhHHHHHHHHHHHc--CCCCCHhHHHHHHHHHhchhhHHHHHHHHHHHHH--
Q 046194 516 IFARMSER-R-DEVSWNSMISGYIHNELLPKAMNLVWFMMQR--GQRLDHFTFATVLSACASVATLERGMEVHACGVR-- 589 (934)
Q Consensus 516 ~~~~~~~~-p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-- 589 (934)
+.+...+. | |.+....-|..-..-++.++|+.....+..- ...|=.. .++-....+....+.-
T Consensus 535 vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~-----------~~~~g~~~~lk~~l~la~ 603 (799)
T KOG4162|consen 535 VVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQ-----------TLDEGKLLRLKAGLHLAL 603 (799)
T ss_pred HHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhh-----------hhhhhhhhhhhcccccCc
Confidence 88766553 2 1111112222223356667776666655431 0000000 0000000000000000
Q ss_pred hCCCCcHhHHHHHHHHHH---hcCCHHHHHHHhccCCCCCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHH
Q 046194 590 ACLEFDVVIGSALVDMYS---KCGRIDYASRFFDLMPVRNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFV 666 (934)
Q Consensus 590 ~~~~~~~~~~~~li~~y~---~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 666 (934)
....-.+.++..+..... +.-..+.....+...+.|+. +|..+ ...|.
T Consensus 604 ~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~-~~~~~----------------------------~~lwl 654 (799)
T KOG4162|consen 604 SQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDS-LWYLL----------------------------QKLWL 654 (799)
T ss_pred ccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCc-hHHHH----------------------------HHHHH
Confidence 000001111111111100 00000000000111111111 11110 11244
Q ss_pred HHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhc
Q 046194 667 GVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGRAGELDKIEEFINKM-PITPN-SLIWRTVLGACCRA 743 (934)
Q Consensus 667 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~ 743 (934)
.....+...+..++|...+.+... +.|- ...|.-....+...|.++||.+.|... .+.|+ +.+..+|...+...
T Consensus 655 laa~~~~~~~~~~~a~~CL~Ea~~---~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~ 731 (799)
T KOG4162|consen 655 LAADLFLLSGNDDEARSCLLEASK---IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLEL 731 (799)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHh---cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh
Confidence 444556777778888877777654 3343 566666778888889999999888776 67776 45777788888787
Q ss_pred cCCCcHHHHH--HHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHHh
Q 046194 744 NCRKTELGRK--AANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 744 ~~~~~~~a~~--~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 794 (934)
|+-..++. +...+++++|.++..|..|+.++-+.|+.++|.+-+....+
T Consensus 732 --G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 732 --GSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred --CCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 88777777 88999999999999999999999999999999998886653
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.00 E-value=0.0001 Score=80.28 Aligned_cols=534 Identities=12% Similarity=0.047 Sum_probs=269.6
Q ss_pred HHHHHcCCCchHHHHHHHHHHHccCCCCCCCCceeHHHHHHHHhcCccccchHHHHHHHHHHHhCCCCCccchhHHHHHH
Q 046194 162 ISVYSQRGDTISVFKLFSRMQREGFRYSLKPNEYTFGSLITAAYSSVLSGSYLLQQILAMVKKAGLLSDLYVGSALVSGF 241 (934)
Q Consensus 162 i~~~~~~g~~~~A~~l~~~m~~~g~~~~~~p~~~t~~~ll~a~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~ 241 (934)
|.+......|.+|+.+++.++... .-.--|.-+..-+++.|+++. +.+++... ..++-.|.+|
T Consensus 739 ieaai~akew~kai~ildniqdqk------~~s~yy~~iadhyan~~dfe~--ae~lf~e~---------~~~~dai~my 801 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQK------TASGYYGEIADHYANKGDFEI--AEELFTEA---------DLFKDAIDMY 801 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhc------cccccchHHHHHhccchhHHH--HHHHHHhc---------chhHHHHHHH
Confidence 344555667777777777776652 234456666677777777665 66555432 3466778888
Q ss_pred HhcCChHHHHHHHHHhhhcccchhhhhhhhhhhhhHHHHHHHHHcCCCchhHHHHHHHHhhccCChhHHHHHHhcCCCCC
Q 046194 242 ARLGNFYYARKIFEQMIQKNVVSMNGLMEGRRKGKEVHGYLIRSGLFDMVAVGNGLVNMYAKCGTIDDSRSVFRFMIGKD 321 (934)
Q Consensus 242 ~~~g~~~~A~~l~~~m~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~ 321 (934)
.++|++++|.++-++...|. .....|-+-..-+-+.|++.+|.+++-.+..|+
T Consensus 802 ~k~~kw~da~kla~e~~~~e---------------------------~t~~~yiakaedldehgkf~eaeqlyiti~~p~ 854 (1636)
T KOG3616|consen 802 GKAGKWEDAFKLAEECHGPE---------------------------ATISLYIAKAEDLDEHGKFAEAEQLYITIGEPD 854 (1636)
T ss_pred hccccHHHHHHHHHHhcCch---------------------------hHHHHHHHhHHhHHhhcchhhhhheeEEccCch
Confidence 88888888888876654332 122233333344456677777777776666665
Q ss_pred cccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCchHHHHHHHHHHhhhCCCCchhHHHHHHHH
Q 046194 322 SVSWNTMISGLDQNGCYEEAIMNFCAMRRDGLMSSNFSLISTLSSCASLGWIMLGQQIHGEGLKLGLDSDVSVSNALLSL 401 (934)
Q Consensus 322 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~ 401 (934)
. -|..|-+.|..+..+++..+-.-.- -..|-..+-.-+-..|++..|+.-|-..- -+.+-++|
T Consensus 855 ~-----aiqmydk~~~~ddmirlv~k~h~d~---l~dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnm 917 (1636)
T KOG3616|consen 855 K-----AIQMYDKHGLDDDMIRLVEKHHGDH---LHDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNM 917 (1636)
T ss_pred H-----HHHHHHhhCcchHHHHHHHHhChhh---hhHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHH
Confidence 3 4556667777777776665533211 12344444455556677776665543322 25566777
Q ss_pred HHhcCChHHHHHHHhhCCCCCc-----cchHH-------------------HHHHHHhCCccHHHHHHHHHHHHHcCCCC
Q 046194 402 YADAGYLSRCLKVFFLMPEHDQ-----VSWNS-------------------VIGAFADSEALVSEAVKYYLDMRRAGWSP 457 (934)
Q Consensus 402 y~~~g~~~~A~~~f~~~~~~~~-----~~~~~-------------------li~~~~~~g~~~~~A~~l~~~m~~~g~~p 457 (934)
|-..+-+++|.++-+.-...|. ..|.- -|..-+.++-+ +-|.++-+--.+.. .|
T Consensus 918 yk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~af-d~afdlari~~k~k-~~ 995 (1636)
T KOG3616|consen 918 YKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAF-DFAFDLARIAAKDK-MG 995 (1636)
T ss_pred hhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccch-hhHHHHHHHhhhcc-Cc
Confidence 7777777777776554322211 11211 11111222222 33333322221111 11
Q ss_pred CcccHHHHHHHHhccCCchHHHHHHHHHHH----------------------hcCCCchhHHHHHHHHHHhcCCHHHHHH
Q 046194 458 NGVTFINILAAASSFSMGKLGHQVHAQVIK----------------------YNVANETTIENALLSCYGKCGEMDDCEK 515 (934)
Q Consensus 458 ~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~----------------------~g~~~~~~~~~~li~~~~~~g~~~~A~~ 515 (934)
.. ...+...+...|.++.|..-+-+.++ .|-.|. .-+.|+.+..++..|.+
T Consensus 996 ~v--hlk~a~~ledegk~edaskhyveaiklntynitwcqavpsrfd~e~ir~gnkpe-----~av~mfi~dndwa~aer 1068 (1636)
T KOG3616|consen 996 EV--HLKLAMFLEDEGKFEDASKHYVEAIKLNTYNITWCQAVPSRFDAEFIRAGNKPE-----EAVEMFIHDNDWAAAER 1068 (1636)
T ss_pred cc--hhHHhhhhhhccchhhhhHhhHHHhhcccccchhhhcccchhhHHHHHcCCChH-----HHHHHhhhcccHHHHHH
Confidence 11 11122223445666666554444433 222222 23456777777777777
Q ss_pred HHHhhccCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhchhhHHHHHHHH-----------
Q 046194 516 IFARMSERRDEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVATLERGMEVH----------- 584 (934)
Q Consensus 516 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~----------- 584 (934)
+-+.-.+..-...++--..+-...|++-+|..++-+. -+|+. .++.+...+.+..|+++-
T Consensus 1069 vae~h~~~~l~dv~tgqar~aiee~d~~kae~fllra----nkp~i-----~l~yf~e~~lw~dalri~kdylp~q~a~i 1139 (1636)
T KOG3616|consen 1069 VAEAHCEDLLADVLTGQARGAIEEGDFLKAEGFLLRA----NKPDI-----ALNYFIEAELWPDALRIAKDYLPHQAAAI 1139 (1636)
T ss_pred HHHhhChhhhHHHHhhhhhccccccchhhhhhheeec----CCCch-----HHHHHHHhccChHHHHHHHhhChhHHHHH
Confidence 6654433200111222223333445554444433221 23332 122222233333332221
Q ss_pred -----HHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCC---------------------------CCcccccH
Q 046194 585 -----ACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPV---------------------------RNVYSWNS 632 (934)
Q Consensus 585 -----~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---------------------------~~~~~~~~ 632 (934)
....+.|-. .+..+.+-..-+-..|++..|...+-.+.. .|.....+
T Consensus 1140 qeeyek~~~k~gar-gvd~fvaqak~weq~gd~rkav~~~lkinrdst~nd~l~e~~~~kaadl~ikfl~~d~nme~i~a 1218 (1636)
T KOG3616|consen 1140 QEEYEKEALKKGAR-GVDGFVAQAKEWEQAGDWRKAVDALLKINRDSTDNDALAEHCTEKAADLSIKFLMGDENMEVIGA 1218 (1636)
T ss_pred HHHHHHHHHhcccc-ccHHHHHHHHHHHhcccHHHHHHHHhhhccCCCCcHHHHHHHHHHHHhhhhhhcCCccchhhHHh
Confidence 122233322 233333444455666777776665544421 11122222
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHHHHHHHHhH---------------HhhCCCCC
Q 046194 633 MISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGFKHFKSMS---------------QVYGLIPQ 697 (934)
Q Consensus 633 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~---------------~~~~~~p~ 697 (934)
...++...|..+.|-+++--.-. -.-.|.+++....|.+|.++-++.. +..|--..
T Consensus 1219 a~~al~~~~~~e~aael~l~f~~---------~keaida~~~~eewakakqvake~~p~~~~~idk~yke~lknegkl~e 1289 (1636)
T KOG3616|consen 1219 AGGALDEAGCHEAAAELLLLFDL---------SKEAIDAFCEAEEWAKAKQVAKELDPEMEDEIDKHYKEFLKNEGKLDE 1289 (1636)
T ss_pred cchhhhcccccHHHHHHHHHhhh---------HHHHHHHHHhHHHHHHHHHHHHHhCchhhHHHHHHHHHHHhccCcccc
Confidence 22233333444444433322110 1123556666666666666544332 21111111
Q ss_pred --cccHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhccCCCcHHHHHHHHHH-HhcCCCCCchHHHHH-
Q 046194 698 --LEQFSCMVDLLGRAGELDKIEEFINKMPITPNSLIWRTVLGACCRANCRKTELGRKAANML-FEMEPQNAVNYVLLA- 773 (934)
Q Consensus 698 --~~~y~~li~~l~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~-~~~~p~~~~~y~~l~- 773 (934)
-.-.-+-++++...|+|++|++.-++-..+|-..-|.++-.+...|. |+...+..++++- -.-+|.|-.+|-.+.
T Consensus 1290 li~vdviaaidl~ien~qwdk~idtak~qnykpil~kyva~yaa~li~~-~d~aq~lal~~q~ga~anpanfniyk~i~e 1368 (1636)
T KOG3616|consen 1290 LIDVDVIAAIDLMIENDQWDKAIDTAKKQNYKPILDKYVALYAAHLIHE-GDLAQALALLEQHGAPANPANFNIYKLIFE 1368 (1636)
T ss_pred ccchhHHHHHHHHHhcccHHHHHHHHHhcccHHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHhCCCCCcccccHHHHHHH
Confidence 01123457889999999999998888778887777777777766664 8888887777653 334677777776443
Q ss_pred HHHHcCC-ChHHH
Q 046194 774 NMYASGG-KWEDV 785 (934)
Q Consensus 774 ~~~~~~g-~~~~a 785 (934)
+.+++-| +..+|
T Consensus 1369 d~lakpgt~~~ea 1381 (1636)
T KOG3616|consen 1369 DMLAKPGTNCAEA 1381 (1636)
T ss_pred HHhcCCCcchHHH
Confidence 4455544 44444
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.3e-05 Score=86.32 Aligned_cols=489 Identities=11% Similarity=0.068 Sum_probs=295.1
Q ss_pred HHHHHHHHhhccCChhHHHHHHhcCCC-----CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHh
Q 046194 293 VGNGLVNMYAKCGTIDDSRSVFRFMIG-----KDSVSWNTMISGLDQNGCYEEAIMNFCAMRRDGLMSSNFSLISTLSSC 367 (934)
Q Consensus 293 ~~~~li~~~~~~g~~~~A~~~f~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 367 (934)
++-..+....+.|++...+..|++... .....|...+.-..+.|-++-++.+|++.++ +.|.. -.-.+.-+
T Consensus 104 Iwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk--~~P~~--~eeyie~L 179 (835)
T KOG2047|consen 104 IWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLK--VAPEA--REEYIEYL 179 (835)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHh--cCHHH--HHHHHHHH
Confidence 455666778899999999999987633 2456799999999999999999999999987 34443 66677778
Q ss_pred hccCchHHHHHHHHHHhhhC------CCCchhHHHHHHHHHHhcCChH---HHHHHHhhCCCC--C--ccchHHHHHHHH
Q 046194 368 ASLGWIMLGQQIHGEGLKLG------LDSDVSVSNALLSLYADAGYLS---RCLKVFFLMPEH--D--QVSWNSVIGAFA 434 (934)
Q Consensus 368 ~~~~~~~~a~~i~~~~~~~g------~~~~~~~~~~li~~y~~~g~~~---~A~~~f~~~~~~--~--~~~~~~li~~~~ 434 (934)
+..++++++.+.+..++... .+.+...|.-+-+..++.-+.- ....+++.+..+ | ...|++|..-|.
T Consensus 180 ~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYI 259 (835)
T KOG2047|consen 180 AKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYI 259 (835)
T ss_pred HhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHH
Confidence 88999999998888776431 2455667777777666654332 334455555442 3 347999999999
Q ss_pred hCCccHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhccCCc----------------------hHHHHHHHHHHHhcC--
Q 046194 435 DSEALVSEAVKYYLDMRRAGWSPNGVTFINILAAASSFSMG----------------------KLGHQVHAQVIKYNV-- 490 (934)
Q Consensus 435 ~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~----------------------~~a~~i~~~~~~~g~-- 490 (934)
+.|.+ ++|..+|++-.+.-. +...|+.+..+|+..... +....-++.+...+.
T Consensus 260 r~g~~-ekarDvyeeai~~v~--tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~ 336 (835)
T KOG2047|consen 260 RSGLF-EKARDVYEEAIQTVM--TVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLL 336 (835)
T ss_pred Hhhhh-HHHHHHHHHHHHhhe--ehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchH
Confidence 99999 999999998876532 334455555555432211 111111222221111
Q ss_pred ---------CCchhHHHHHHHHHHhcCCHHHHHHHHHhhccC--C------CcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 046194 491 ---------ANETTIENALLSCYGKCGEMDDCEKIFARMSER--R------DEVSWNSMISGYIHNELLPKAMNLVWFMM 553 (934)
Q Consensus 491 ---------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--p------~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 553 (934)
+.++..|..-+. ...|+..+-...+.+...+ | -...|..+...|-.+|+.+.|..+|++..
T Consensus 337 lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~ 414 (835)
T KOG2047|consen 337 LNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKAT 414 (835)
T ss_pred HHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhh
Confidence 011111111111 1124444445555544432 2 12246677777777777777777777765
Q ss_pred HcCCCCC---HhHHHHHHHHHhchhhHHHHHHHHHHHHHh-----------CCCC------cHhHHHHHHHHHHhcCCHH
Q 046194 554 QRGQRLD---HFTFATVLSACASVATLERGMEVHACGVRA-----------CLEF------DVVIGSALVDMYSKCGRID 613 (934)
Q Consensus 554 ~~g~~p~---~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~-----------~~~~------~~~~~~~li~~y~~~g~~~ 613 (934)
....+-- ..+|..-...=.+..+++.|..+.+.+... +.++ +..+++-+++.--..|-++
T Consensus 415 ~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfe 494 (835)
T KOG2047|consen 415 KVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFE 494 (835)
T ss_pred cCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHH
Confidence 5322111 112222222222344566666666554321 1111 2333444555555666677
Q ss_pred HHHHHhccCCCCCcccccHHHH---HHHHcCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHHh---hCcHHHHHHHHH
Q 046194 614 YASRFFDLMPVRNVYSWNSMIS---GYARHGHGDKALTLFSQMKLDGPLPDH-VTFVGVLSACSH---AGLVDEGFKHFK 686 (934)
Q Consensus 614 ~A~~~~~~~~~~~~~~~~~li~---~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~---~g~~~~a~~~~~ 686 (934)
....+++.+.+--+.|=..+++ -+-.+.-++++.+.|++-+..=--|+. ..|+..|.-+.+ .-.++.|..+|+
T Consensus 495 stk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFE 574 (835)
T KOG2047|consen 495 STKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFE 574 (835)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 7777777665433332222222 122455677788777765554333553 345555554332 346899999999
Q ss_pred HhHHhhCCCCC--cccHHHHHHHHhhcCChHHHHHHHHhC--CCCCC--HHHHHHHHHHHHhccCCCcHHHHHHHHHHHh
Q 046194 687 SMSQVYGLIPQ--LEQFSCMVDLLGRAGELDKIEEFINKM--PITPN--SLIWRTVLGACCRANCRKTELGRKAANMLFE 760 (934)
Q Consensus 687 ~m~~~~~~~p~--~~~y~~li~~l~~~g~~~~A~~~~~~m--~~~p~--~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~ 760 (934)
+..+ +.+|. ...|-.....=-+.|....|++++++. ++++. ...|+..+.-.... =-+.....+++++++
T Consensus 575 qaL~--~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~--yGv~~TR~iYekaIe 650 (835)
T KOG2047|consen 575 QALD--GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEI--YGVPRTREIYEKAIE 650 (835)
T ss_pred HHHh--cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH--hCCcccHHHHHHHHH
Confidence 9988 67666 223333344445678999999999998 44543 34788888755544 345667889999999
Q ss_pred cCCCCCch--HHHHHHHHHcCCChHHHHHHHHHHHh
Q 046194 761 MEPQNAVN--YVLLANMYASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 761 ~~p~~~~~--y~~l~~~~~~~g~~~~a~~~~~~m~~ 794 (934)
.-|++-.- -.-.+++-.+.|..+.|..++..-.+
T Consensus 651 ~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq 686 (835)
T KOG2047|consen 651 SLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQ 686 (835)
T ss_pred hCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhh
Confidence 98876443 34567888899999999888765443
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.2e-07 Score=93.50 Aligned_cols=249 Identities=15% Similarity=0.134 Sum_probs=169.2
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHH
Q 046194 539 NELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRF 618 (934)
Q Consensus 539 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~ 618 (934)
.|++.+|.++..+-.+.+-.| ...|..-..+.-..|+.+.+-.++.++.+.--+++..++-+........|+...|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 577777777777755554333 2344455556666777777777777777654455666666677777777777777766
Q ss_pred hccCC---CCCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-------hhHHHHHHHHHhhCcHHHHHHHHHHh
Q 046194 619 FDLMP---VRNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDH-------VTFVGVLSACSHAGLVDEGFKHFKSM 688 (934)
Q Consensus 619 ~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-------~t~~~ll~a~~~~g~~~~a~~~~~~m 688 (934)
.++.. ..+.........+|.+.|++.+...++.+|.+.|.--|. .++..++.-+.+.+..+.-...++..
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 66543 345667777778888888888888888888887765543 34677777777766666666677777
Q ss_pred HHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCc
Q 046194 689 SQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKM-PITPNSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAV 767 (934)
Q Consensus 689 ~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 767 (934)
..+ .+-++..-.+++.-+.++|+.++|.+++++. +-.-|+. .. .+..+..- ++.+.-++.+++-.+..|++|.
T Consensus 256 pr~--lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-L~-~~~~~l~~--~d~~~l~k~~e~~l~~h~~~p~ 329 (400)
T COG3071 256 PRK--LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-LC-RLIPRLRP--GDPEPLIKAAEKWLKQHPEDPL 329 (400)
T ss_pred cHH--hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-HH-HHHhhcCC--CCchHHHHHHHHHHHhCCCChh
Confidence 663 4455666677777888888888888887766 2222222 22 22233344 6777777788888888888888
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHHh
Q 046194 768 NYVLLANMYASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 768 ~y~~l~~~~~~~g~~~~a~~~~~~m~~ 794 (934)
.+..|+.+|.+.+.|.+|.+.++...+
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~ 356 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALK 356 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 888888888888888888887775543
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.7e-08 Score=97.62 Aligned_cols=229 Identities=14% Similarity=0.140 Sum_probs=173.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhcc-CCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhchh
Q 046194 497 ENALLSCYGKCGEMDDCEKIFARMSE-RRDEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVA 575 (934)
Q Consensus 497 ~~~li~~~~~~g~~~~A~~~~~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~ 575 (934)
-+.+..+|.+.|.+.+|.+.|+.-.. .|-+.||-.|-..|.+-.+++.|+.+|.+-.+ ..|-.+||..
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld--~fP~~VT~l~--------- 294 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLD--SFPFDVTYLL--------- 294 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhh--cCCchhhhhh---------
Confidence 35677888888888888888877555 36777888888888888888888888887765 3565555532
Q ss_pred hHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCC---CCcccccHHHHHHHHcCChHHHHHHHHH
Q 046194 576 TLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPV---RNVYSWNSMISGYARHGHGDKALTLFSQ 652 (934)
Q Consensus 576 ~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~ 652 (934)
-....+-..++.++|.++++...+ .|+.+..++..+|.-.++++-|+..|++
T Consensus 295 -------------------------g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRR 349 (478)
T KOG1129|consen 295 -------------------------GQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRR 349 (478)
T ss_pred -------------------------hhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHH
Confidence 223334444566666666665543 3566777788888889999999999999
Q ss_pred HHHCCCCCChhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHH
Q 046194 653 MKLDGPLPDHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKMPITPNSLI 732 (934)
Q Consensus 653 m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~~~p~~~~ 732 (934)
+.+.|+. +...|..+.-+|...+.+|-++..|++.... --.| ++| ..+
T Consensus 350 iLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlst-at~~------------------~~a------------aDv 397 (478)
T KOG1129|consen 350 ILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALST-ATQP------------------GQA------------ADV 397 (478)
T ss_pred HHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhh-ccCc------------------chh------------hhh
Confidence 9998854 4567888888888888888888887777652 1111 111 335
Q ss_pred HHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 046194 733 WRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMKEA 795 (934)
Q Consensus 733 ~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~ 795 (934)
|-.|....... ||+..|.+.++.++.-+|++...|+.|+-+-.+.|+.++|..++...++.
T Consensus 398 WYNlg~vaV~i--GD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 398 WYNLGFVAVTI--GDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred hhccceeEEec--cchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 66666666666 99999999999999999999999999999999999999999998887754
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=8.8e-08 Score=110.56 Aligned_cols=242 Identities=12% Similarity=0.016 Sum_probs=173.6
Q ss_pred hhHHHHHHHHHHHcCCCCCH-hHHHHHHHHHh---------chhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCC
Q 046194 542 LPKAMNLVWFMMQRGQRLDH-FTFATVLSACA---------SVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGR 611 (934)
Q Consensus 542 ~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~---------~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~ 611 (934)
.++|+.+|++.... .|+. ..+..+..++. ..+++++|...++.+++... .+...+..+..++...|+
T Consensus 277 ~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP-~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 277 LQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDH-NNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHccC
Confidence 45677777776653 4543 23333322222 23457788888888877532 266777788888899999
Q ss_pred HHHHHHHhccCCC--CC-cccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChh-hHHHHHHHHHhhCcHHHHHHHHHH
Q 046194 612 IDYASRFFDLMPV--RN-VYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHV-TFVGVLSACSHAGLVDEGFKHFKS 687 (934)
Q Consensus 612 ~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~ 687 (934)
+++|...|++... |+ ...|..+...+...|++++|+..+++..+. .|+.. .+..++..+...|++++|...+++
T Consensus 354 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 354 YIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAGITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence 9999999998763 43 457888889999999999999999999984 56643 333444456678999999999999
Q ss_pred hHHhhCCCCC-cccHHHHHHHHhhcCChHHHHHHHHhC-CCCCCHHHH-HHHHHHHHhccCCCcHHHHHHHHHHHhcCCC
Q 046194 688 MSQVYGLIPQ-LEQFSCMVDLLGRAGELDKIEEFINKM-PITPNSLIW-RTVLGACCRANCRKTELGRKAANMLFEMEPQ 764 (934)
Q Consensus 688 m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p~~~~~-~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~ 764 (934)
..+. ..|+ +..+..+..+|...|++++|.+.+++. +..|+.... +.+...+... | +.+...++.+++..-.
T Consensus 432 ~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g--~~a~~~l~~ll~~~~~ 505 (553)
T PRK12370 432 LRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQN--S--ERALPTIREFLESEQR 505 (553)
T ss_pred HHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhcc--H--HHHHHHHHHHHHHhhH
Confidence 8763 3354 556778889999999999999999987 556665544 4444455555 5 5788888887776655
Q ss_pred CCchHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 046194 765 NAVNYVLLANMYASGGKWEDVAKARKAMKEA 795 (934)
Q Consensus 765 ~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~ 795 (934)
.+..+..+..+|.-.|+-+.+..+ +++.+.
T Consensus 506 ~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 506 IDNNPGLLPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred hhcCchHHHHHHHHHhhhHHHHHH-HHhhcc
Confidence 555555688899999999998877 666543
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.93 E-value=7.5e-07 Score=92.67 Aligned_cols=215 Identities=7% Similarity=-0.002 Sum_probs=103.1
Q ss_pred CccHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 046194 437 EALVSEAVKYYLDMRRAGWSPNGVTFINILAAASSFSMGKLGHQVHAQVIKYNVANETTIENALLSCYGKCGEMDDCEKI 516 (934)
Q Consensus 437 g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 516 (934)
|+. ..|..-|+..+.....++.. |.-+-.++....+.++..+.|....+... -++.+|.--.+++.-.+++++|..-
T Consensus 340 g~~-~~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~~ldp-~n~dvYyHRgQm~flL~q~e~A~aD 416 (606)
T KOG0547|consen 340 GDS-LGAQEDFDAAIKLDPAFNSL-YIKRAAAYADENQSEKMWKDFNKAEDLDP-ENPDVYYHRGQMRFLLQQYEEAIAD 416 (606)
T ss_pred CCc-hhhhhhHHHHHhcCcccchH-HHHHHHHHhhhhccHHHHHHHHHHHhcCC-CCCchhHhHHHHHHHHHHHHHHHHH
Confidence 444 45555555554433222221 33333344444444444444444433321 1233334444455555566666666
Q ss_pred HHhhccC-C-CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhchhhHHHHHHHHHHHHHhCCC-
Q 046194 517 FARMSER-R-DEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVATLERGMEVHACGVRACLE- 593 (934)
Q Consensus 517 ~~~~~~~-p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~- 593 (934)
|+....- | ++..|-.+-.+.-+.++++++...|++.... .+-....|+.....+...++++.|.+.++.+++....
T Consensus 417 F~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~ 495 (606)
T KOG0547|consen 417 FQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPRE 495 (606)
T ss_pred HHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcccc
Confidence 6655542 2 3444444444444555666666666665553 3333344555555555555555555555554442111
Q ss_pred ------CcHhHHHHHHHHHHhcCCHHHHHHHhccCCCCCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHH
Q 046194 594 ------FDVVIGSALVDMYSKCGRIDYASRFFDLMPVRNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPD-HVTFV 666 (934)
Q Consensus 594 ------~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~ 666 (934)
+.+.+.-+++-.- -.+++.+|+.++++..+. .|- ...|.
T Consensus 496 ~~~~v~~~plV~Ka~l~~q--------------------------------wk~d~~~a~~Ll~KA~e~--Dpkce~A~~ 541 (606)
T KOG0547|consen 496 HLIIVNAAPLVHKALLVLQ--------------------------------WKEDINQAENLLRKAIEL--DPKCEQAYE 541 (606)
T ss_pred ccccccchhhhhhhHhhhc--------------------------------hhhhHHHHHHHHHHHHcc--CchHHHHHH
Confidence 0111111111111 125566666666666663 333 45566
Q ss_pred HHHHHHHhhCcHHHHHHHHHHhH
Q 046194 667 GVLSACSHAGLVDEGFKHFKSMS 689 (934)
Q Consensus 667 ~ll~a~~~~g~~~~a~~~~~~m~ 689 (934)
+|...-.+.|+.++|+++|+...
T Consensus 542 tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 542 TLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHH
Confidence 66666666666667766666653
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.93 E-value=6.9e-06 Score=87.85 Aligned_cols=179 Identities=15% Similarity=0.143 Sum_probs=116.8
Q ss_pred HHHHHHHHhcCCHHHHHHHhccCCCCC-cccccHHHH-HHH-HcCChHHHHHHHHHHHHCCCCCCh--hhHHHHHHHHHh
Q 046194 600 SALVDMYSKCGRIDYASRFFDLMPVRN-VYSWNSMIS-GYA-RHGHGDKALTLFSQMKLDGPLPDH--VTFVGVLSACSH 674 (934)
Q Consensus 600 ~~li~~y~~~g~~~~A~~~~~~~~~~~-~~~~~~li~-~~~-~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~ 674 (934)
++++.+|. +..+.+.++-...+... ...+.+++. ++. +...+.+|.+++.+.-+. .|+. +.....+.....
T Consensus 313 ~~lL~l~t--nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is 388 (652)
T KOG2376|consen 313 NALLALFT--NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKIS 388 (652)
T ss_pred HHHHHHHh--hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHh
Confidence 45666665 44566677666665322 223333333 332 233577888888877664 4554 333344455778
Q ss_pred hCcHHHHHHHHH--------HhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhC--------CCCCCH-HHHHHHH
Q 046194 675 AGLVDEGFKHFK--------SMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKM--------PITPNS-LIWRTVL 737 (934)
Q Consensus 675 ~g~~~~a~~~~~--------~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m--------~~~p~~-~~~~~ll 737 (934)
.|+++.|.+++. .+.+ .+. .+.+...++.++.+.++-+-|.+++.+. .-.+.. .+|.-+.
T Consensus 389 ~gn~~~A~~il~~~~~~~~ss~~~-~~~--~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa 465 (652)
T KOG2376|consen 389 QGNPEVALEILSLFLESWKSSILE-AKH--LPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAA 465 (652)
T ss_pred cCCHHHHHHHHHHHhhhhhhhhhh-hcc--ChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHh
Confidence 999999999998 4443 133 3456677888999888877776666554 222322 2344444
Q ss_pred HHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHH
Q 046194 738 GACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKA 788 (934)
Q Consensus 738 ~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~ 788 (934)
..-.++ |+.++|...++.+.+.+|++....+.++-.|++.. .+.|..+
T Consensus 466 ~f~lr~--G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~d-~eka~~l 513 (652)
T KOG2376|consen 466 EFKLRH--GNEEEASSLLEELVKFNPNDTDLLVQLVTAYARLD-PEKAESL 513 (652)
T ss_pred HHHHhc--CchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhcC-HHHHHHH
Confidence 444456 99999999999999999999999999999998774 4455444
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.6e-07 Score=99.06 Aligned_cols=210 Identities=14% Similarity=0.049 Sum_probs=150.5
Q ss_pred hhHHHHHHHHHHHHHh-CCCC--cHhHHHHHHHHHHhcCCHHHHHHHhccCCC--C-CcccccHHHHHHHHcCChHHHHH
Q 046194 575 ATLERGMEVHACGVRA-CLEF--DVVIGSALVDMYSKCGRIDYASRFFDLMPV--R-NVYSWNSMISGYARHGHGDKALT 648 (934)
Q Consensus 575 ~~~~~a~~i~~~~~~~-~~~~--~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~ 648 (934)
+..+.+..-+..++.. ...| ....+..+...|.+.|+.++|...|+...+ | +...|+.+...|...|++++|+.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 4455666666666643 2233 245677788889999999999999987763 3 45689999999999999999999
Q ss_pred HHHHHHHCCCCCC-hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhC--C
Q 046194 649 LFSQMKLDGPLPD-HVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKM--P 725 (934)
Q Consensus 649 l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m--~ 725 (934)
.|++..+ +.|+ ..++..+..++...|++++|.+.|+...+ ..|+..........+...++.++|.+.+++. .
T Consensus 120 ~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~---~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 120 AFDSVLE--LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ---DDPNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 9999998 5676 56677788888999999999999999876 4455332222233445678899999999764 3
Q ss_pred CCCCHHHHHHHHHHHHhccCCCcHHHHHHHHHHH-------hcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 046194 726 ITPNSLIWRTVLGACCRANCRKTELGRKAANMLF-------EMEPQNAVNYVLLANMYASGGKWEDVAKARKAMKEA 795 (934)
Q Consensus 726 ~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~-------~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~ 795 (934)
..|+...|. +.. ... |+...+. +++.+. ++.|+.+..|..++.+|...|++++|...+++..+.
T Consensus 195 ~~~~~~~~~-~~~--~~l--g~~~~~~-~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 195 LDKEQWGWN-IVE--FYL--GKISEET-LMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred CCccccHHH-HHH--HHc--cCCCHHH-HHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 344433332 222 223 5554432 333333 556677789999999999999999999999888753
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.86 E-value=0.0005 Score=78.04 Aligned_cols=327 Identities=12% Similarity=0.148 Sum_probs=201.3
Q ss_pred HHHHHHHhhhCCC--CchhHHHHHHHHHHhcCChHHHHHHHhhCC-CCCcc-----chHHHHHHHHhCCccHHHHHHHHH
Q 046194 377 QQIHGEGLKLGLD--SDVSVSNALLSLYADAGYLSRCLKVFFLMP-EHDQV-----SWNSVIGAFADSEALVSEAVKYYL 448 (934)
Q Consensus 377 ~~i~~~~~~~g~~--~~~~~~~~li~~y~~~g~~~~A~~~f~~~~-~~~~~-----~~~~li~~~~~~g~~~~~A~~l~~ 448 (934)
+++.+..+..+++ .|+.-.+.-+.++...+-..+-.++++++. ++++. .-|.||-.-.+... ....+..+
T Consensus 967 RqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~--trVm~YI~ 1044 (1666)
T KOG0985|consen 967 RQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADR--TRVMEYIN 1044 (1666)
T ss_pred HHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcCh--HHHHHHHH
Confidence 4555666665543 355556666777778888888888887765 23222 23444444444333 45666665
Q ss_pred HHHHcCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccCCCcch
Q 046194 449 DMRRAGWSPNGVTFINILAAASSFSMGKLGHQVHAQVIKYNVANETTIENALLSCYGKCGEMDDCEKIFARMSERRDEVS 528 (934)
Q Consensus 449 ~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~ 528 (934)
++-.-. --.+...+...+-+++|..+|... ..+....+.||+ .-+.++.|.+.-++.. ....
T Consensus 1045 rLdnyD-------a~~ia~iai~~~LyEEAF~ifkkf-----~~n~~A~~VLie---~i~~ldRA~efAe~~n---~p~v 1106 (1666)
T KOG0985|consen 1045 RLDNYD-------APDIAEIAIENQLYEEAFAIFKKF-----DMNVSAIQVLIE---NIGSLDRAYEFAERCN---EPAV 1106 (1666)
T ss_pred HhccCC-------chhHHHHHhhhhHHHHHHHHHHHh-----cccHHHHHHHHH---HhhhHHHHHHHHHhhC---ChHH
Confidence 553221 112333445555566676666543 223333333433 3566777777776665 3467
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHh
Q 046194 529 WNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSK 608 (934)
Q Consensus 529 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~ 608 (934)
|..+..+-.+.|...+|++-|-+. -|+..|.-+++++.+.|.++.-.+++..+.+..-+|.+ -+.||-+|+|
T Consensus 1107 WsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~AyAk 1178 (1666)
T KOG0985|consen 1107 WSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAYAK 1178 (1666)
T ss_pred HHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHHHH
Confidence 888988888889988888877332 35577888999999999999888888888777666544 4578888999
Q ss_pred cCCHHHHHHHhccCCC-----------------------CCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhH
Q 046194 609 CGRIDYASRFFDLMPV-----------------------RNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTF 665 (934)
Q Consensus 609 ~g~~~~A~~~~~~~~~-----------------------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 665 (934)
.+++.+-++.+..-.. .++.-|..|...+...|++..|..--++. .+..||
T Consensus 1179 t~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktW 1252 (1666)
T KOG0985|consen 1179 TNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKA------NSTKTW 1252 (1666)
T ss_pred hchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHH
Confidence 8888877666543210 13445666666677777777666655442 245677
Q ss_pred HHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc
Q 046194 666 VGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCRA 743 (934)
Q Consensus 666 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~ 743 (934)
.-+-.+|...+.+.-|. |.- .++.-..+-..-++.-|-..|.++|-..+++.. |++. .-..|.-|.-.|.+.
T Consensus 1253 K~VcfaCvd~~EFrlAQ-----iCG-L~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky 1326 (1666)
T KOG0985|consen 1253 KEVCFACVDKEEFRLAQ-----ICG-LNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY 1326 (1666)
T ss_pred HHHHHHHhchhhhhHHH-----hcC-ceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc
Confidence 77777777665554443 222 123334455667788888888888888888765 5443 233455555555544
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.8e-05 Score=84.82 Aligned_cols=364 Identities=14% Similarity=0.058 Sum_probs=193.1
Q ss_pred HHHHHHHHHHhCCCCCccchhHHHHHHHhcCChHHHHHHHHHhhhcccchhhhhhhhhhhhhHHHHHHHHHcCCCchhHH
Q 046194 215 LQQILAMVKKAGLLSDLYVGSALVSGFARLGNFYYARKIFEQMIQKNVVSMNGLMEGRRKGKEVHGYLIRSGLFDMVAVG 294 (934)
Q Consensus 215 a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~ 294 (934)
|.+....+...+ +-|...+.+=+-+..+.+.+++|+.+.+.-..... .+.+.
T Consensus 31 a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~--------------------------~~~~~- 82 (652)
T KOG2376|consen 31 AVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLV--------------------------INSFF- 82 (652)
T ss_pred HHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhh--------------------------cchhh-
Confidence 555555555544 44556677777788888888888866554321100 00000
Q ss_pred HHHHHHhh--ccCChhHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC-hhhHHHHHHHhhccC
Q 046194 295 NGLVNMYA--KCGTIDDSRSVFRFMIGKDSVSWNTMISGLDQNGCYEEAIMNFCAMRRDGLMSS-NFSLISTLSSCASLG 371 (934)
Q Consensus 295 ~~li~~~~--~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~ 371 (934)
+=.+|+ +.+.+|+|...++.....+..+...=...+.+.|++++|+++|+.+.+.+..-- ...-..++.+....
T Consensus 83 --fEKAYc~Yrlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l- 159 (652)
T KOG2376|consen 83 --FEKAYCEYRLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL- 159 (652)
T ss_pred --HHHHHHHHHcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh-
Confidence 124454 679999999999966555554555556678899999999999999987653321 11112222211110
Q ss_pred chHHHHHHHHHHhhhCCCC--chhHHHHHHHHHHhcCChHHHHHHHhhC--------CCCCc-----cc-----hHHHHH
Q 046194 372 WIMLGQQIHGEGLKLGLDS--DVSVSNALLSLYADAGYLSRCLKVFFLM--------PEHDQ-----VS-----WNSVIG 431 (934)
Q Consensus 372 ~~~~a~~i~~~~~~~g~~~--~~~~~~~li~~y~~~g~~~~A~~~f~~~--------~~~~~-----~~-----~~~li~ 431 (934)
+. ..+......| +-..+-.....+...|++.+|+++++.. .+.|. .. ---|.-
T Consensus 160 ------~~-~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlay 232 (652)
T KOG2376|consen 160 ------QV-QLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAY 232 (652)
T ss_pred ------hH-HHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHH
Confidence 00 0111111222 1222223445677889999999999876 22111 11 112334
Q ss_pred HHHhCCccHHHHHHHHHHHHHcCCCCCcc---cHHHHHHHHhccCCchHH--HHHHHHHH-----------HhcCCCchh
Q 046194 432 AFADSEALVSEAVKYYLDMRRAGWSPNGV---TFINILAAASSFSMGKLG--HQVHAQVI-----------KYNVANETT 495 (934)
Q Consensus 432 ~~~~~g~~~~~A~~l~~~m~~~g~~p~~~---t~~~ll~a~~~~~~~~~a--~~i~~~~~-----------~~g~~~~~~ 495 (934)
.+-..|+. ++|..++...++... +|.. ++..=|.+.....++-.+ ...+.... ...-.....
T Consensus 233 VlQ~~Gqt-~ea~~iy~~~i~~~~-~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~ 310 (652)
T KOG2376|consen 233 VLQLQGQT-AEASSIYVDIIKRNP-ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIY 310 (652)
T ss_pred HHHHhcch-HHHHHHHHHHHHhcC-CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 56678999 999999999887643 3332 222223333333333221 11111100 000001111
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhccC-CCcchHHHHHHHHH-hcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhc
Q 046194 496 IENALLSCYGKCGEMDDCEKIFARMSER-RDEVSWNSMISGYI-HNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACAS 573 (934)
Q Consensus 496 ~~~~li~~~~~~g~~~~A~~~~~~~~~~-p~~~~~~~li~~~~-~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 573 (934)
.-+.++.+|. +..+.++++-...+.. |....=+.+..++. +...+.+|.+++...-+....-.....-..++....
T Consensus 311 ~N~~lL~l~t--nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is 388 (652)
T KOG2376|consen 311 RNNALLALFT--NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKIS 388 (652)
T ss_pred HHHHHHHHHh--hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHh
Confidence 1134444443 4455666666666554 33322233333322 222466777777666554222223444455556677
Q ss_pred hhhHHHHHHHHH--------HHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccC
Q 046194 574 VATLERGMEVHA--------CGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLM 622 (934)
Q Consensus 574 ~~~~~~a~~i~~--------~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~ 622 (934)
.|+++.|.+++. .+.+.+. .+.+..+++.+|.+.++-+.|..++++.
T Consensus 389 ~gn~~~A~~il~~~~~~~~ss~~~~~~--~P~~V~aiv~l~~~~~~~~~a~~vl~~A 443 (652)
T KOG2376|consen 389 QGNPEVALEILSLFLESWKSSILEAKH--LPGTVGAIVALYYKIKDNDSASAVLDSA 443 (652)
T ss_pred cCCHHHHHHHHHHHhhhhhhhhhhhcc--ChhHHHHHHHHHHhccCCccHHHHHHHH
Confidence 888888888877 3333333 3445566777788777777777766553
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=98.85 E-value=3.1e-07 Score=93.87 Aligned_cols=199 Identities=11% Similarity=0.063 Sum_probs=100.3
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHH
Q 046194 526 EVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVDM 605 (934)
Q Consensus 526 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~ 605 (934)
...+..+...|...|++++|.+.|++..... +.+...+..+...+...|+++.|.+.+....+... .+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHH
Confidence 4457777788888888888888888876642 22334455555555566666666666665555321 123344444444
Q ss_pred HHhcCCHHHHHHHhccCCCCCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhCcHHHHHHH
Q 046194 606 YSKCGRIDYASRFFDLMPVRNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPD-HVTFVGVLSACSHAGLVDEGFKH 684 (934)
Q Consensus 606 y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~ 684 (934)
|...|++++|.+.| ++..+....|. ...+..+...+...|++++|...
T Consensus 109 ~~~~g~~~~A~~~~-------------------------------~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 157 (234)
T TIGR02521 109 LCQQGKYEQAMQQF-------------------------------EQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKY 157 (234)
T ss_pred HHHcccHHHHHHHH-------------------------------HHHHhccccccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 44555555555444 44443211111 22233344444555555555555
Q ss_pred HHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhc
Q 046194 685 FKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCRANCRKTELGRKAANMLFEM 761 (934)
Q Consensus 685 ~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~ 761 (934)
|++..+. .+.+...+..+...+...|++++|.+.+++. ...| +...+..+...+... |+.+.+....+.+.+.
T Consensus 158 ~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 158 LTRALQI--DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARAL--GDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHh--CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH--hhHHHHHHHHHHHHhh
Confidence 5554431 1112334445555555555555555555544 1112 233333444444444 5555555555544443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.8e-07 Score=108.01 Aligned_cols=209 Identities=15% Similarity=0.025 Sum_probs=159.7
Q ss_pred hhHHHHHHHHHHHHHhCCCC-cHhHHHHHHHHHH---------hcCCHHHHHHHhccCCC--C-CcccccHHHHHHHHcC
Q 046194 575 ATLERGMEVHACGVRACLEF-DVVIGSALVDMYS---------KCGRIDYASRFFDLMPV--R-NVYSWNSMISGYARHG 641 (934)
Q Consensus 575 ~~~~~a~~i~~~~~~~~~~~-~~~~~~~li~~y~---------~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g 641 (934)
+++++|.+.++.+++. .| +...+..+...|. ..+++++|...+++..+ | +...|..+...+...|
T Consensus 275 ~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 275 YSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc
Confidence 4567888999988874 34 3445555555443 23458899999988764 3 4568888888899999
Q ss_pred ChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCc-ccHHHHHHHHhhcCChHHHHH
Q 046194 642 HGDKALTLFSQMKLDGPLPD-HVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQL-EQFSCMVDLLGRAGELDKIEE 719 (934)
Q Consensus 642 ~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~y~~li~~l~~~g~~~~A~~ 719 (934)
++++|+..|++..+. .|+ ...+..+..++...|++++|...+++..+ +.|+. ..+..+...+...|++++|.+
T Consensus 353 ~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~---l~P~~~~~~~~~~~~~~~~g~~eeA~~ 427 (553)
T PRK12370 353 EYIVGSLLFKQANLL--SPISADIKYYYGWNLFMAGQLEEALQTINECLK---LDPTRAAAGITKLWITYYHTGIDDAIR 427 (553)
T ss_pred CHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCChhhHHHHHHHHHhccCHHHHHH
Confidence 999999999999994 576 45677778889999999999999999976 55663 233445556777899999999
Q ss_pred HHHhC--CCCCCHH-HHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHHh
Q 046194 720 FINKM--PITPNSL-IWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 720 ~~~~m--~~~p~~~-~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 794 (934)
.+++. ...|+.. .+..+...+... |+.++|...++++....|.+......++..|...| ++|...++.+.+
T Consensus 428 ~~~~~l~~~~p~~~~~~~~la~~l~~~--G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 428 LGDELRSQHLQDNPILLSMQVMFLSLK--GKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHHHHhccccCHHHHHHHHHHHHhC--CCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 99887 2245444 455566666667 99999999999999899988888889999999888 477776666654
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.8e-05 Score=79.11 Aligned_cols=177 Identities=16% Similarity=0.138 Sum_probs=121.1
Q ss_pred CHHHHHHHhccCCC----CC-cccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHHHHHH
Q 046194 611 RIDYASRFFDLMPV----RN-VYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGFKHF 685 (934)
Q Consensus 611 ~~~~A~~~~~~~~~----~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 685 (934)
.+.-|.+.|+-... -| +.--.+|.+.+.-..++++++..++....-=..-|...| .+..|....|.+.+|.++|
T Consensus 338 HlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf 416 (557)
T KOG3785|consen 338 HLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELF 416 (557)
T ss_pred HHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHH
Confidence 35567777765432 22 335567888888888899999988888775333344444 4778889999999999999
Q ss_pred HHhHHhhCCCCCcccHHH-HHHHHhhcCChHHHHHHHHhCCCCCCHHHH-HHHHHHHHhccCCCcHHHHHHHHHHHhcCC
Q 046194 686 KSMSQVYGLIPQLEQFSC-MVDLLGRAGELDKIEEFINKMPITPNSLIW-RTVLGACCRANCRKTELGRKAANMLFEMEP 763 (934)
Q Consensus 686 ~~m~~~~~~~p~~~~y~~-li~~l~~~g~~~~A~~~~~~m~~~p~~~~~-~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p 763 (934)
-.+... .+ .+..+|.. |..+|.+.|+.+-|.+++-++....+..+. .....-|.+. +.+=-|-+++..+..++|
T Consensus 417 ~~is~~-~i-kn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~--~eFyyaaKAFd~lE~lDP 492 (557)
T KOG3785|consen 417 IRISGP-EI-KNKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKA--NEFYYAAKAFDELEILDP 492 (557)
T ss_pred hhhcCh-hh-hhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHH--HHHHHHHHhhhHHHccCC
Confidence 877541 22 34555655 467899999999999999888544444444 4445688888 888888889998888887
Q ss_pred CCCchHHHHHHHHHcCCChHHHHHHHHHHHhCCCcCCCc
Q 046194 764 QNAVNYVLLANMYASGGKWEDVAKARKAMKEAEVKKEAG 802 (934)
Q Consensus 764 ~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 802 (934)
. |..| .|+-....-++..+-....++.|+
T Consensus 493 ~-pEnW---------eGKRGACaG~f~~l~~~~~~~~p~ 521 (557)
T KOG3785|consen 493 T-PENW---------EGKRGACAGLFRQLANHKTDPIPI 521 (557)
T ss_pred C-cccc---------CCccchHHHHHHHHHcCCCCCCch
Confidence 5 3332 244445566666666555555554
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.82 E-value=7.1e-05 Score=82.76 Aligned_cols=570 Identities=12% Similarity=0.118 Sum_probs=279.6
Q ss_pred chhhhHHHH--HHhhcCChhhHHHhhccCCCCChhhHHHHHHHHhcCCChhhHHHHHHHHHHc-C--------CCCCccc
Q 046194 20 VFLCNTLIN--VYVRVGDLASASKLFDEMPDRNSVSWACIVSGYTHKGMSNEACKMFKEMVRA-G--------FLLNRYA 88 (934)
Q Consensus 20 ~~~~~~li~--~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g--------~~~~~~~ 88 (934)
..|-..++. .|.-.|+.+.|.+-...+. +-..|..|.+-+.+.++++-|.-.+..|... | -.|+ .+
T Consensus 726 ~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~ 802 (1416)
T KOG3617|consen 726 ESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-ED 802 (1416)
T ss_pred HHHHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-ch
Confidence 344444443 4666777777766555443 3455777777777777777776666655321 1 1111 11
Q ss_pred HHHHHHHhhhcCCCChhhhhHHHHHHHHhcCCCCchhhHHHHHHhhhCCCChHHHHHHhhccCCCCc-ccHHHHHHHHHc
Q 046194 89 LGSVLRACQECGPSGFKFGMQVHCLVLKSNQTFDGLVSNVLIAMYGSCLESTDCARRIFEEIETRDL-ISWNSIISVYSQ 167 (934)
Q Consensus 89 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~~g~~~~a~~~f~~~~~~~~-~~~~~li~~~~~ 167 (934)
-..+.-..... |.++.|+.+..+..+.. -|=..|... |.+++|.++-+.-.+-.. .||-.--.-+-.
T Consensus 803 eakvAvLAieL--gMlEeA~~lYr~ckR~D---------LlNKlyQs~-g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lea 870 (1416)
T KOG3617|consen 803 EAKVAVLAIEL--GMLEEALILYRQCKRYD---------LLNKLYQSQ-GMWSEAFEIAETKDRIHLRNTYYNYAKYLEA 870 (1416)
T ss_pred hhHHHHHHHHH--hhHHHHHHHHHHHHHHH---------HHHHHHHhc-ccHHHHHHHHhhccceehhhhHHHHHHHHHh
Confidence 11111111223 55555555555544432 222334444 666666655443222111 123333333444
Q ss_pred CCCchHHHHHHHHHHHccCCCCCCCCceeHHHHHHHHhcCccccchHHHHHHHHHHHhCCCCCccchhHHHHHHHhcCCh
Q 046194 168 RGDTISVFKLFSRMQREGFRYSLKPNEYTFGSLITAAYSSVLSGSYLLQQILAMVKKAGLLSDLYVGSALVSGFARLGNF 247 (934)
Q Consensus 168 ~g~~~~A~~l~~~m~~~g~~~~~~p~~~t~~~ll~a~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 247 (934)
.++.+.|++.|++- |+ |--..+. +|.- +... .++..+. ..|...|.=-..-+-..|+.
T Consensus 871 r~Di~~AleyyEK~---~~-----hafev~r-mL~e-----~p~~--~e~Yv~~------~~d~~L~~WWgqYlES~Gem 928 (1416)
T KOG3617|consen 871 RRDIEAALEYYEKA---GV-----HAFEVFR-MLKE-----YPKQ--IEQYVRR------KRDESLYSWWGQYLESVGEM 928 (1416)
T ss_pred hccHHHHHHHHHhc---CC-----hHHHHHH-HHHh-----ChHH--HHHHHHh------ccchHHHHHHHHHHhcccch
Confidence 56666666666542 11 1000111 1100 0000 1111111 12223333333344456777
Q ss_pred HHHHHHHHHhhhcccchhhhhhhhhhhhhHHHHHHHHHcCCCchhHHHHHHHHhhccCChhHHHHHHhcCCCCCcccHHH
Q 046194 248 YYARKIFEQMIQKNVVSMNGLMEGRRKGKEVHGYLIRSGLFDMVAVGNGLVNMYAKCGTIDDSRSVFRFMIGKDSVSWNT 327 (934)
Q Consensus 248 ~~A~~l~~~m~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~ 327 (934)
+.|+.+|..... |-++++..+-.|++++|-++-++ ..|......
T Consensus 929 daAl~~Y~~A~D----------------------------------~fs~VrI~C~qGk~~kAa~iA~e--sgd~AAcYh 972 (1416)
T KOG3617|consen 929 DAALSFYSSAKD----------------------------------YFSMVRIKCIQGKTDKAARIAEE--SGDKAACYH 972 (1416)
T ss_pred HHHHHHHHHhhh----------------------------------hhhheeeEeeccCchHHHHHHHh--cccHHHHHH
Confidence 777777766542 23556777778999999988775 346677778
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCchHHHHHHHHHHhhhCCCCc----------hhHHHH
Q 046194 328 MISGLDQNGCYEEAIMNFCAMRRDGLMSSNFSLISTLSSCASLGWIMLGQQIHGEGLKLGLDSD----------VSVSNA 397 (934)
Q Consensus 328 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~----------~~~~~~ 397 (934)
+.+-|-..|++.+|+.+|.+.+. |...|+.|...+.-+. +.....-.|...- ..-...
T Consensus 973 laR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKEnd~~d~---L~nlal~s~~~d~v~aArYyEe~g~~~~~ 1040 (1416)
T KOG3617|consen 973 LARMYENDGDVVKAVKFFTRAQA---------FSNAIRLCKENDMKDR---LANLALMSGGSDLVSAARYYEELGGYAHK 1040 (1416)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHhcCHHHH---HHHHHhhcCchhHHHHHHHHHHcchhhhH
Confidence 88999999999999999988753 5566665544332211 1111111111000 001223
Q ss_pred HHHHHHhcCChHHHHHHHhhCCC--------------CCccchHHHHHHHHhCCccHHHHHHHHHHHHHcCCCCCcccHH
Q 046194 398 LLSLYADAGYLSRCLKVFFLMPE--------------HDQVSWNSVIGAFADSEALVSEAVKYYLDMRRAGWSPNGVTFI 463 (934)
Q Consensus 398 li~~y~~~g~~~~A~~~f~~~~~--------------~~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~ 463 (934)
-+..|-|.|.+.+|+++--+-.+ .|....+-...-++.+.++ ++|..++-..++ |.
T Consensus 1041 AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qy-ekAV~lL~~ar~---------~~ 1110 (1416)
T KOG3617|consen 1041 AVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQY-EKAVNLLCLARE---------FS 1110 (1416)
T ss_pred HHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHH-HHHHHHHHHHHH---------HH
Confidence 45667888888888776333222 2444455555566777777 888887765543 33
Q ss_pred HHHHHHhccCCchHHHHHHHHHH--HhcCCC---chhHHHHHHHHHHhcCCHHHHHHHHHhhccCCCcchHHHHHHHHHh
Q 046194 464 NILAAASSFSMGKLGHQVHAQVI--KYNVAN---ETTIENALLSCYGKCGEMDDCEKIFARMSERRDEVSWNSMISGYIH 538 (934)
Q Consensus 464 ~ll~a~~~~~~~~~a~~i~~~~~--~~g~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~ 538 (934)
..+..|... ++.-..++-+.|. +.+.++ ...+...+.+.+.+.|.+..|-+-|.+...+ -.-+.++.+
T Consensus 1111 ~AlqlC~~~-nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdK------l~AMraLLK 1183 (1416)
T KOG3617|consen 1111 GALQLCKNR-NVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGDK------LSAMRALLK 1183 (1416)
T ss_pred HHHHHHhcC-CCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhH------HHHHHHHHh
Confidence 344444332 2222233333321 112222 1234456677888888888888888776654 123445555
Q ss_pred cCChhHHHH---------H----HHHHHHcCCCCCHhHHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHH
Q 046194 539 NELLPKAMN---------L----VWFMMQRGQRLDHFTFATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVDM 605 (934)
Q Consensus 539 ~g~~~~A~~---------l----~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~ 605 (934)
.|+.++..- + -+-++....+-|+.+...++.-|.+...++.--.+++....-. +.-+ .-
T Consensus 1184 SGdt~KI~FFAn~sRqkEiYImAANyLQtlDWq~~pq~mK~I~tFYTKgqafd~LanFY~~cAqiE----iee~----q~ 1255 (1416)
T KOG3617|consen 1184 SGDTQKIRFFANTSRQKEIYIMAANYLQTLDWQDNPQTMKDIETFYTKGQAFDHLANFYKSCAQIE----IEEL----QT 1255 (1416)
T ss_pred cCCcceEEEEeeccccceeeeehhhhhhhcccccChHHHhhhHhhhhcchhHHHHHHHHHHHHHhh----HHHH----hh
Confidence 665443110 0 0112222344455555555555555444443333333221110 0000 01
Q ss_pred HH-hcCCHHHHHHHhccCCCCCcc--cccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHHH
Q 046194 606 YS-KCGRIDYASRFFDLMPVRNVY--SWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGF 682 (934)
Q Consensus 606 y~-~~g~~~~A~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 682 (934)
|. ..|-+++|.+.+.+...+|.. .++.|-.-.+. ...+.-....+.. +..+++
T Consensus 1256 ydKa~gAl~eA~kCl~ka~~k~~~~t~l~~Lq~~~a~----------------------vk~~l~~~q~~~e--D~~~~i 1311 (1416)
T KOG3617|consen 1256 YDKAMGALEEAAKCLLKAEQKNMSTTGLDALQEDLAK----------------------VKVQLRKLQIMKE--DAADGI 1311 (1416)
T ss_pred hhHHhHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHH----------------------HHHHHHHHHHhhh--hHHHHH
Confidence 11 134556666666665544421 12222111111 1111112222222 445555
Q ss_pred HHHHHhHHhhCCCCC----cccHHHHHHHHhhcCChHHHHHHHHhC
Q 046194 683 KHFKSMSQVYGLIPQ----LEQFSCMVDLLGRAGELDKIEEFINKM 724 (934)
Q Consensus 683 ~~~~~m~~~~~~~p~----~~~y~~li~~l~~~g~~~~A~~~~~~m 724 (934)
.-...|.++ .+-|+ ...|..||..+.+..++..|...+++|
T Consensus 1312 ~qc~~llee-p~ld~~Ir~~~~~a~lie~~v~~k~y~~AyRal~el 1356 (1416)
T KOG3617|consen 1312 RQCTTLLEE-PILDDIIRCTRLFALLIEDHVSRKNYKPAYRALTEL 1356 (1416)
T ss_pred HHHHHHhhC-cCCCCcchhHHHHHHHHHHHHhhhhccHHHHHHHHH
Confidence 555556554 23232 456777888888888888888888888
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.80 E-value=5.7e-07 Score=98.65 Aligned_cols=243 Identities=16% Similarity=0.177 Sum_probs=151.5
Q ss_pred hhHHHHHHHHhhccCChhHHHHHHhcCCCC----------Ccc-cHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhh
Q 046194 291 VAVGNGLVNMYAKCGTIDDSRSVFRFMIGK----------DSV-SWNTMISGLDQNGCYEEAIMNFCAMRRDGLMSSNFS 359 (934)
Q Consensus 291 ~~~~~~li~~~~~~g~~~~A~~~f~~~~~~----------~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 359 (934)
..+..-|..+|...|+++.|..+|....+. .+. .-+.+...|...+++++|..+|+++...
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i-------- 270 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTI-------- 270 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH--------
Confidence 445555788888888888888888665321 111 2233445666777777777777776541
Q ss_pred HHHHHHHhhccCchHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCccchHHHHHHHHhCCcc
Q 046194 360 LISTLSSCASLGWIMLGQQIHGEGLKLGLDSDVSVSNALLSLYADAGYLSRCLKVFFLMPEHDQVSWNSVIGAFADSEAL 439 (934)
Q Consensus 360 ~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~ 439 (934)
.....-...+.-..+++.|..+|.+.|++++|...+
T Consensus 271 --------------------~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~------------------------ 306 (508)
T KOG1840|consen 271 --------------------REEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYC------------------------ 306 (508)
T ss_pred --------------------HHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHH------------------------
Confidence 111100001112345667777899999999988776
Q ss_pred HHHHHHHHHHHHHcCC-CCCc-ccHHHHHHHHhccCCchHHHHHHHHHHHh---cCCCc----hhHHHHHHHHHHhcCCH
Q 046194 440 VSEAVKYYLDMRRAGW-SPNG-VTFINILAAASSFSMGKLGHQVHAQVIKY---NVANE----TTIENALLSCYGKCGEM 510 (934)
Q Consensus 440 ~~~A~~l~~~m~~~g~-~p~~-~t~~~ll~a~~~~~~~~~a~~i~~~~~~~---g~~~~----~~~~~~li~~~~~~g~~ 510 (934)
+.|++++++. .|. .|.. .-++.+...|...+.++++..++....+. -+.++ ..+++.|...|.+.|++
T Consensus 307 -e~Al~I~~~~--~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~ 383 (508)
T KOG1840|consen 307 -ERALEIYEKL--LGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKY 383 (508)
T ss_pred -HHHHHHHHHh--hccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcch
Confidence 6666666662 221 2222 23445556667777777777776654332 12222 35778899999999999
Q ss_pred HHHHHHHHhhccC---------C-CcchHHHHHHHHHhcCChhHHHHHHHHHHH----cCC-CCC-HhHHHHHHHHHhch
Q 046194 511 DDCEKIFARMSER---------R-DEVSWNSMISGYIHNELLPKAMNLVWFMMQ----RGQ-RLD-HFTFATVLSACASV 574 (934)
Q Consensus 511 ~~A~~~~~~~~~~---------p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~-~p~-~~t~~~ll~a~~~~ 574 (934)
++|+++|+....+ + .....+.|...|.+.+++++|.++|.+-.. -|. .|+ ..+|..|...|...
T Consensus 384 ~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~ 463 (508)
T KOG1840|consen 384 KEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQ 463 (508)
T ss_pred hHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHc
Confidence 9999999887653 1 233466777888888888888888877433 221 222 25666666777777
Q ss_pred hhHHHHHHHHHHHH
Q 046194 575 ATLERGMEVHACGV 588 (934)
Q Consensus 575 ~~~~~a~~i~~~~~ 588 (934)
|+++.|.++.+.+.
T Consensus 464 g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 464 GNYEAAEELEEKVL 477 (508)
T ss_pred ccHHHHHHHHHHHH
Confidence 77777777766654
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.80 E-value=3.2e-07 Score=86.54 Aligned_cols=161 Identities=12% Similarity=0.106 Sum_probs=135.0
Q ss_pred ccHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHH
Q 046194 630 WNSMISGYARHGHGDKALTLFSQMKLDGPLPD-HVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDL 707 (934)
Q Consensus 630 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~ 707 (934)
...|.-+|.+.|+...|..-+++.++. .|+ ..++..+...|.+.|..+.|.+.|+...+ +.|+ -.+.|....-
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls---l~p~~GdVLNNYG~F 112 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALS---LAPNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh---cCCCccchhhhhhHH
Confidence 445677888999999999999999884 565 56788788888999999999999998876 5666 7788888999
Q ss_pred HhhcCChHHHHHHHHhC---CCCCC-HHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChH
Q 046194 708 LGRAGELDKIEEFINKM---PITPN-SLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWE 783 (934)
Q Consensus 708 l~~~g~~~~A~~~~~~m---~~~p~-~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~ 783 (934)
+|..|++++|...|++. |.-|. ..+|..+.....+. |+.+.|+..+++.++++|+++.....+.+...+.|++-
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~--gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~ 190 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKA--GQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYA 190 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhc--CCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccch
Confidence 99999999999999887 32222 45777777777777 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCC
Q 046194 784 DVAKARKAMKEAEV 797 (934)
Q Consensus 784 ~a~~~~~~m~~~~~ 797 (934)
.|...++.....+.
T Consensus 191 ~Ar~~~~~~~~~~~ 204 (250)
T COG3063 191 PARLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHHHhccc
Confidence 99999888776554
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.79 E-value=6e-06 Score=87.92 Aligned_cols=284 Identities=10% Similarity=0.060 Sum_probs=168.3
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCc---cchHHHHHHHHhCCccHHHHHHHHHHHHHcCCCCCcccHHHH
Q 046194 389 DSDVSVSNALLSLYADAGYLSRCLKVFFLMPEHDQ---VSWNSVIGAFADSEALVSEAVKYYLDMRRAGWSPNGVTFINI 465 (934)
Q Consensus 389 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~l 465 (934)
.-+..+...-.+-+...+++.+..++++.+.+.|. ..+..-|..+...|+. .+-..+=.+|++.
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~-n~Lf~lsh~LV~~------------ 307 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKS-NKLFLLSHKLVDL------------ 307 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhccc-chHHHHHHHHHHh------------
Confidence 33444445555555566666666666665554322 2333344455555555 4444444444432
Q ss_pred HHHHhccCCchHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccC--CCcchHHHHHHHHHhcCChh
Q 046194 466 LAAASSFSMGKLGHQVHAQVIKYNVANETTIENALLSCYGKCGEMDDCEKIFARMSER--RDEVSWNSMISGYIHNELLP 543 (934)
Q Consensus 466 l~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--p~~~~~~~li~~~~~~g~~~ 543 (934)
.+....+|-++.-.|.-.|+..+|++.|.....- .-...|-.....|+-.|..+
T Consensus 308 ------------------------yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~Ehd 363 (611)
T KOG1173|consen 308 ------------------------YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHD 363 (611)
T ss_pred ------------------------CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHH
Confidence 1223344455666666677888888888765442 13456878888888888888
Q ss_pred HHHHHHHHHHHc--C-CCCCHhHHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhc
Q 046194 544 KAMNLVWFMMQR--G-QRLDHFTFATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFD 620 (934)
Q Consensus 544 ~A~~l~~~m~~~--g-~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~ 620 (934)
+|+.-+...-+. | ..|. --+---|.+.++.+.|.+.+.++... .+.|+.+.+-+.-+....+.+.+|...|+
T Consensus 364 QAmaaY~tAarl~~G~hlP~----LYlgmey~~t~n~kLAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~ 438 (611)
T KOG1173|consen 364 QAMAAYFTAARLMPGCHLPS----LYLGMEYMRTNNLKLAEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQ 438 (611)
T ss_pred HHHHHHHHHHHhccCCcchH----HHHHHHHHHhccHHHHHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHH
Confidence 888777665442 1 1111 11112344556666666666655442 12245555555444444455555555443
Q ss_pred cCCCCCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCccc
Q 046194 621 LMPVRNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQ 700 (934)
Q Consensus 621 ~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~ 700 (934)
... ...+....+. .--..+++.|..+|.+.+++++|+..|+.... -.+.+..+
T Consensus 439 ~~l------------------------~~ik~~~~e~-~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~--l~~k~~~~ 491 (611)
T KOG1173|consen 439 KAL------------------------EVIKSVLNEK-IFWEPTLNNLGHAYRKLNKYEEAIDYYQKALL--LSPKDAST 491 (611)
T ss_pred HHH------------------------HHhhhccccc-cchhHHHHhHHHHHHHHhhHHHHHHHHHHHHH--cCCCchhH
Confidence 321 0001110110 11245688888899999999999999999876 24455888
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHH
Q 046194 701 FSCMVDLLGRAGELDKIEEFINKM-PITPNSLIWRTVLGACC 741 (934)
Q Consensus 701 y~~li~~l~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~ 741 (934)
|+++.-.|...|+++.|.+.|.+. .++|+..+-..+|+.+.
T Consensus 492 ~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 492 HASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAI 533 (611)
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 999999999999999999999887 78888877777777554
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.78 E-value=6.4e-05 Score=75.24 Aligned_cols=442 Identities=14% Similarity=0.101 Sum_probs=241.5
Q ss_pred HHHhhccCChhHHHHHHhcCCCC---CcccHHH-HHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCch
Q 046194 298 VNMYAKCGTIDDSRSVFRFMIGK---DSVSWNT-MISGLDQNGCYEEAIMNFCAMRRDGLMSSNFSLISTLSSCASLGWI 373 (934)
Q Consensus 298 i~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 373 (934)
+.-+....++..|+.+++--..- ...+-+. +..++.+.|++++|+..|....... .|+......+..+..-.|..
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence 34455567888888877544221 1112222 3345667888888888888776643 44555555554444566777
Q ss_pred HHHHHHHHHHhhhCCCCchhHH-HHHHHHHHhcCChHHHHHHHhhCCCCCccchHHHHHHHHhCCccHHHHHHHHHHHHH
Q 046194 374 MLGQQIHGEGLKLGLDSDVSVS-NALLSLYADAGYLSRCLKVFFLMPEHDQVSWNSVIGAFADSEALVSEAVKYYLDMRR 452 (934)
Q Consensus 374 ~~a~~i~~~~~~~g~~~~~~~~-~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~ 452 (934)
.+|+++-... |+.... ..|...-.+.++-++-..+-+.+.+.. .---+|.+.....-.+ .+|++++.+...
T Consensus 108 ~eA~~~~~ka------~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~-EdqLSLAsvhYmR~HY-QeAIdvYkrvL~ 179 (557)
T KOG3785|consen 108 IEAKSIAEKA------PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL-EDQLSLASVHYMRMHY-QEAIDVYKRVLQ 179 (557)
T ss_pred HHHHHHHhhC------CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH-HHHHhHHHHHHHHHHH-HHHHHHHHHHHh
Confidence 7777765553 333333 334455556666555555544443321 1111122222222233 667777666654
Q ss_pred cCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccC-CC-cchHH
Q 046194 453 AGWSPNGVTFINILAAASSFSMGKLGHQVHAQVIKYNVANETTIENALLSCYGKCGEMDDCEKIFARMSER-RD-EVSWN 530 (934)
Q Consensus 453 ~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-p~-~~~~~ 530 (934)
.+ |+-...+. .+.-+|.|..-++-+.++++-.... || ++.-|
T Consensus 180 dn--~ey~alNV----------------------------------y~ALCyyKlDYydvsqevl~vYL~q~pdStiA~N 223 (557)
T KOG3785|consen 180 DN--PEYIALNV----------------------------------YMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKN 223 (557)
T ss_pred cC--hhhhhhHH----------------------------------HHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHH
Confidence 32 11111111 1223455666666666665544433 32 33334
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHH-HHH-HHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHh
Q 046194 531 SMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFAT-VLS-ACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSK 608 (934)
Q Consensus 531 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~-ll~-a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~ 608 (934)
.......+.=+..-|..-..++.+.+-.. ..+.. +++ -+.--..-+.|++++--+.+ +.|. .--.|+-.|.+
T Consensus 224 Lkacn~fRl~ngr~ae~E~k~ladN~~~~--~~f~~~l~rHNLVvFrngEgALqVLP~L~~--~IPE--ARlNL~iYyL~ 297 (557)
T KOG3785|consen 224 LKACNLFRLINGRTAEDEKKELADNIDQE--YPFIEYLCRHNLVVFRNGEGALQVLPSLMK--HIPE--ARLNLIIYYLN 297 (557)
T ss_pred HHHHHHhhhhccchhHHHHHHHHhccccc--chhHHHHHHcCeEEEeCCccHHHhchHHHh--hChH--hhhhheeeecc
Confidence 43333333222222333333333322111 00000 000 00011122444444433332 1222 22346667899
Q ss_pred cCCHHHHHHHhccCCCCCcccccHHHHHHHHcCC-------hHHHHHHHHHHHHCCCCCChhh-HHHHHHHHHhhCcHHH
Q 046194 609 CGRIDYASRFFDLMPVRNVYSWNSMISGYARHGH-------GDKALTLFSQMKLDGPLPDHVT-FVGVLSACSHAGLVDE 680 (934)
Q Consensus 609 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~-------~~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~ 680 (934)
.+++++|..+.++.....+.-|-.-.-.++..|+ ..-|.+.|+-.-+++..-|.+. --++.+++.-.-.+++
T Consensus 298 q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFdd 377 (557)
T KOG3785|consen 298 QNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDD 377 (557)
T ss_pred cccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHH
Confidence 9999999999888764444333332233444443 4456666666555665555332 4445555566678999
Q ss_pred HHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhccCCCcHHHHHHHHHH
Q 046194 681 GFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKM-PIT-PNSLIWRTVLGACCRANCRKTELGRKAANML 758 (934)
Q Consensus 681 a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~ 758 (934)
.+.++.++.. |=..-|...| .+..+++..|++.+|.++|-.. +.+ .|..+|.+.+.-|..++ +..+.| ++..
T Consensus 378 Vl~YlnSi~s-YF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~n-kkP~lA---W~~~ 451 (557)
T KOG3785|consen 378 VLTYLNSIES-YFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRN-KKPQLA---WDMM 451 (557)
T ss_pred HHHHHHHHHH-HhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhc-CCchHH---HHHH
Confidence 9999999987 3344444444 4788999999999999999877 222 57889999999999885 666554 5555
Q ss_pred HhcC-CCC-CchHHHHHHHHHcCCChHHHHHHHHHHHhCC
Q 046194 759 FEME-PQN-AVNYVLLANMYASGGKWEDVAKARKAMKEAE 796 (934)
Q Consensus 759 ~~~~-p~~-~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~ 796 (934)
++.+ |.+ -+....+++...+++.+==|.+.+..+....
T Consensus 452 lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lD 491 (557)
T KOG3785|consen 452 LKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILD 491 (557)
T ss_pred HhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccC
Confidence 6655 322 3346678888999999888888888887543
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.75 E-value=0.00016 Score=78.66 Aligned_cols=374 Identities=14% Similarity=0.154 Sum_probs=212.6
Q ss_pred hccCChhHHHHHHhcCCC---CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCchHHHHH
Q 046194 302 AKCGTIDDSRSVFRFMIG---KDSVSWNTMISGLDQNGCYEEAIMNFCAMRRDGLMSSNFSLISTLSSCASLGWIMLGQQ 378 (934)
Q Consensus 302 ~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~ 378 (934)
...|+-++|......-.. ++.+.|..+.-.+....++++|+..|+.... +.||....
T Consensus 52 ~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~--~~~dN~qi------------------ 111 (700)
T KOG1156|consen 52 NCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALK--IEKDNLQI------------------ 111 (700)
T ss_pred hcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHh--cCCCcHHH------------------
Confidence 356888999888876654 3567899988888888999999999999887 44554221
Q ss_pred HHHHHhhhCCCCchhHHHHHHHHHHhcCChHHHHHHHhh---CCCCCccchHHHHHHHHhCCccHHHHHHHHHHHHHcC-
Q 046194 379 IHGEGLKLGLDSDVSVSNALLSLYADAGYLSRCLKVFFL---MPEHDQVSWNSVIGAFADSEALVSEAVKYYLDMRRAG- 454 (934)
Q Consensus 379 i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~---~~~~~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g- 454 (934)
+.-|.-.-++.|+++.....-.. ........|.....++.-.|+. ..|..++++..+..
T Consensus 112 ----------------lrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y-~~A~~il~ef~~t~~ 174 (700)
T KOG1156|consen 112 ----------------LRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEY-KMALEILEEFEKTQN 174 (700)
T ss_pred ----------------HHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhc
Confidence 11111111222222222111111 1122345677777777778888 88888888887654
Q ss_pred CCCCcccHHHHHH------HHhccCCchHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccC-CCcc
Q 046194 455 WSPNGVTFINILA------AASSFSMGKLGHQVHAQVIKYNVANETTIENALLSCYGKCGEMDDCEKIFARMSER-RDEV 527 (934)
Q Consensus 455 ~~p~~~t~~~ll~------a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-p~~~ 527 (934)
-.|+...|.-... .....|.++.+.+......+. +......--.-.+.+.+.+++++|..++..+..+ ||..
T Consensus 175 ~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~ 253 (700)
T KOG1156|consen 175 TSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNL 253 (700)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhH
Confidence 2455555533222 223445555555554433221 1112222334556788899999999999998887 7777
Q ss_pred hHHHHHH-HHHhcCChhHHH-HHHHHHHHc---CCCCCHhHHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHH
Q 046194 528 SWNSMIS-GYIHNELLPKAM-NLVWFMMQR---GQRLDHFTFATVLSACASVATLERGMEVHACGVRACLEFDVVIGSAL 602 (934)
Q Consensus 528 ~~~~li~-~~~~~g~~~~A~-~l~~~m~~~---g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l 602 (934)
.|+.... ++.+-.+.-+++ .+|....+. .-.|-.... +......-.+....++....+.|+++ ++..+
T Consensus 254 ~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlpl----svl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl 326 (700)
T KOG1156|consen 254 DYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPL----SVLNGEELKEIVDKYLRPLLSKGVPS---VFKDL 326 (700)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccH----HHhCcchhHHHHHHHHHHHhhcCCCc---hhhhh
Confidence 7766554 333344444555 555555442 111211111 11122223334445555666667654 22333
Q ss_pred HHHHHhcCCHH---H-HHHHhccCC--------------CCCcccccH--HHHHHHHcCChHHHHHHHHHHHHCCCCCCh
Q 046194 603 VDMYSKCGRID---Y-ASRFFDLMP--------------VRNVYSWNS--MISGYARHGHGDKALTLFSQMKLDGPLPDH 662 (934)
Q Consensus 603 i~~y~~~g~~~---~-A~~~~~~~~--------------~~~~~~~~~--li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 662 (934)
...|-.-...+ + +..+...+. .|....|+. ++..|-..|+++.|+...+...+. .|+.
T Consensus 327 ~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTl 404 (700)
T KOG1156|consen 327 RSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTL 404 (700)
T ss_pred HHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchH
Confidence 33332211111 0 111111111 234444554 667777888888888888888773 5663
Q ss_pred h-hHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhC
Q 046194 663 V-TFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKM 724 (934)
Q Consensus 663 ~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m 724 (934)
+ -|..=.+-+.+.|++++|..++++..+- -.||...=+--+.-..|+.+.++|.++....
T Consensus 405 iEly~~KaRI~kH~G~l~eAa~~l~ea~el--D~aDR~INsKcAKYmLrAn~i~eA~~~~skF 465 (700)
T KOG1156|consen 405 IELYLVKARIFKHAGLLDEAAAWLDEAQEL--DTADRAINSKCAKYMLRANEIEEAEEVLSKF 465 (700)
T ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhc--cchhHHHHHHHHHHHHHccccHHHHHHHHHh
Confidence 3 3444445678888888888888888662 3355444434556667888888888877665
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.73 E-value=4.9e-05 Score=83.97 Aligned_cols=345 Identities=13% Similarity=0.085 Sum_probs=192.4
Q ss_pred hhHHHHHHHHhhccCChhHHHHHHhcCCCC-----------Cc-ccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChh
Q 046194 291 VAVGNGLVNMYAKCGTIDDSRSVFRFMIGK-----------DS-VSWNTMISGLDQNGCYEEAIMNFCAMRRDGLMSSNF 358 (934)
Q Consensus 291 ~~~~~~li~~~~~~g~~~~A~~~f~~~~~~-----------~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 358 (934)
..+|..+.+|+.+..++|-|.-.+-.|..- |. ..=.-..-.-.+.|..++|..+|++-++
T Consensus 757 ~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR-------- 828 (1416)
T KOG3617|consen 757 DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELGMLEEALILYRQCKR-------- 828 (1416)
T ss_pred hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHhhHHHHHHHHHHHHH--------
Confidence 457788889999998888888777666320 11 1111111223456778888888888776
Q ss_pred hHHHHHHHhhccCchHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCccchHHHHHHHHhCCc
Q 046194 359 SLISTLSSCASLGWIMLGQQIHGEGLKLGLDSDVSVSNALLSLYADAGYLSRCLKVFFLMPEHDQVSWNSVIGAFADSEA 438 (934)
Q Consensus 359 t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~ 438 (934)
|..+=+.+-..|.+++|.++-+.--+.-+. .+|.....-+-..++.+.|++.|++...+--..+..|. .+
T Consensus 829 -~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr---~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~------e~ 898 (1416)
T KOG3617|consen 829 -YDLLNKLYQSQGMWSEAFEIAETKDRIHLR---NTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLK------EY 898 (1416)
T ss_pred -HHHHHHHHHhcccHHHHHHHHhhccceehh---hhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHH------hC
Confidence 334445556677777777765443221111 23333344444556777777777765433211111111 01
Q ss_pred cHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHH
Q 046194 439 LVSEAVKYYLDMRRAGWSPNGVTFINILAAASSFSMGKLGHQVHAQVIKYNVANETTIENALLSCYGKCGEMDDCEKIFA 518 (934)
Q Consensus 439 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 518 (934)
+ .....+.+.+ -|...|...-...-..|+.+.|..++...... -+++...+-.|+.++|-++-+
T Consensus 899 p-~~~e~Yv~~~------~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~---------fs~VrI~C~qGk~~kAa~iA~ 962 (1416)
T KOG3617|consen 899 P-KQIEQYVRRK------RDESLYSWWGQYLESVGEMDAALSFYSSAKDY---------FSMVRIKCIQGKTDKAARIAE 962 (1416)
T ss_pred h-HHHHHHHHhc------cchHHHHHHHHHHhcccchHHHHHHHHHhhhh---------hhheeeEeeccCchHHHHHHH
Confidence 1 2222222222 23345555555666778888888887766543 456666677788888888776
Q ss_pred hhccCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhchhhHH---------------HHHHH
Q 046194 519 RMSERRDEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVATLE---------------RGMEV 583 (934)
Q Consensus 519 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~---------------~a~~i 583 (934)
+-. |.....-+...|-..|++.+|..+|.+.+ +|...|+.|-..+.-+ .|-.+
T Consensus 963 esg---d~AAcYhlaR~YEn~g~v~~Av~FfTrAq---------afsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArY 1030 (1416)
T KOG3617|consen 963 ESG---DKAACYHLARMYENDGDVVKAVKFFTRAQ---------AFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARY 1030 (1416)
T ss_pred hcc---cHHHHHHHHHHhhhhHHHHHHHHHHHHHH---------HHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHH
Confidence 654 55777778888888888889988887764 3445555554333222 22222
Q ss_pred HHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCC--------------CCcccccHHHHHHHHcCChHHHHHH
Q 046194 584 HACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPV--------------RNVYSWNSMISGYARHGHGDKALTL 649 (934)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--------------~~~~~~~~li~~~~~~g~~~~A~~l 649 (934)
+++ .|.. ..--+..|-|.|.+.+|+++-=+-.+ .|+...+.-..-|+.+.++++|..+
T Consensus 1031 yEe---~g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~l 1102 (1416)
T KOG3617|consen 1031 YEE---LGGY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNL 1102 (1416)
T ss_pred HHH---cchh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHH
Confidence 222 1211 11234568888888888775322211 2333333334445566667777666
Q ss_pred HHHHHH----------CC----------------CCCChhh----HHHHHHHHHhhCcHHHHHHHHHHhH
Q 046194 650 FSQMKL----------DG----------------PLPDHVT----FVGVLSACSHAGLVDEGFKHFKSMS 689 (934)
Q Consensus 650 ~~~m~~----------~g----------------~~p~~~t----~~~ll~a~~~~g~~~~a~~~~~~m~ 689 (934)
+-..++ +| -.|+..+ +..+...|.++|.+..|-+-|.+.-
T Consensus 1103 L~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAG 1172 (1416)
T KOG3617|consen 1103 LCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAG 1172 (1416)
T ss_pred HHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhh
Confidence 544332 11 1233333 3444556777777777776665553
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.69 E-value=7.6e-05 Score=81.05 Aligned_cols=109 Identities=12% Similarity=0.149 Sum_probs=85.0
Q ss_pred cccHHHHHHHHhhcCChHHHHHHHHhC-CCCCCHHH-HHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 046194 698 LEQFSCMVDLLGRAGELDKIEEFINKM-PITPNSLI-WRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANM 775 (934)
Q Consensus 698 ~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p~~~~-~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~ 775 (934)
..++-.++..+-+.|+++.|.++++.. +..|..+- |-.-...+.+. |+++.|-..++.+.+++-.|.-+...-++-
T Consensus 371 lWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~--G~l~eAa~~l~ea~elD~aDR~INsKcAKY 448 (700)
T KOG1156|consen 371 LWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHA--GLLDEAAAWLDEAQELDTADRAINSKCAKY 448 (700)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhc--CChHHHHHHHHHHHhccchhHHHHHHHHHH
Confidence 345567888899999999999999987 77777654 33344455555 999999999999999998887777788888
Q ss_pred HHcCCChHHHHHHHHHHHhCCCc-----CCCceeEEEe
Q 046194 776 YASGGKWEDVAKARKAMKEAEVK-----KEAGCSWVTM 808 (934)
Q Consensus 776 ~~~~g~~~~a~~~~~~m~~~~~~-----~~~~~~~~~~ 808 (934)
..++.+.++|.++..+..+.|.. .+..|.|..+
T Consensus 449 mLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~ 486 (700)
T KOG1156|consen 449 MLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQL 486 (700)
T ss_pred HHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhH
Confidence 99999999999998888776641 1224667544
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=3.8e-06 Score=88.62 Aligned_cols=202 Identities=10% Similarity=-0.055 Sum_probs=131.0
Q ss_pred HHHHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCC--C-CcccccHHHHHHHHc
Q 046194 564 FATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPV--R-NVYSWNSMISGYARH 640 (934)
Q Consensus 564 ~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~ 640 (934)
|...-..+...|+.+.|...+..+++.. +.+...++.+...|...|++++|...|+...+ | +..+|..+...+...
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~ 145 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYG 145 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 3344444555566666666666555532 22567778888888888999999888887753 3 345778888888899
Q ss_pred CChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHH--HH
Q 046194 641 GHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDK--IE 718 (934)
Q Consensus 641 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~--A~ 718 (934)
|++++|++.|++..+. .|+..........+...++.++|...|+.... ...|+...+ .++..+ .|++++ +.
T Consensus 146 g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~--~~~~~~~~~-~~~~~~--lg~~~~~~~~ 218 (296)
T PRK11189 146 GRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYE--KLDKEQWGW-NIVEFY--LGKISEETLM 218 (296)
T ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--hCCccccHH-HHHHHH--ccCCCHHHHH
Confidence 9999999999999884 56644222222234556789999999977654 233443222 333333 454433 33
Q ss_pred HHHHhC-CC----CC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCC-CchHHHHHHH
Q 046194 719 EFINKM-PI----TP-NSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQN-AVNYVLLANM 775 (934)
Q Consensus 719 ~~~~~m-~~----~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~-~~~y~~l~~~ 775 (934)
+.+.+. .. .| ....|..|...+... |+.+.|...++++++.+|.+ ..+-..+..+
T Consensus 219 ~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~--g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~ 280 (296)
T PRK11189 219 ERLKAGATDNTELAERLCETYFYLAKYYLSL--GDLDEAAALFKLALANNVYNFVEHRYALLEL 280 (296)
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 333322 11 22 235788899999988 99999999999999999754 4444444444
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.66 E-value=0.00085 Score=74.71 Aligned_cols=377 Identities=12% Similarity=0.043 Sum_probs=201.8
Q ss_pred CCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC---CCccchHHHHHHHHhCCccHHHHHHHHHHHHHcCCCCCcccH-
Q 046194 387 GLDSDVSVSNALLSLYADAGYLSRCLKVFFLMPE---HDQVSWNSVIGAFADSEALVSEAVKYYLDMRRAGWSPNGVTF- 462 (934)
Q Consensus 387 g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~- 462 (934)
.+..|..+|..|.-+...+|+++.+.+.|++... .....|+.+-..|.-.|.. ..|+.+++.-....-.|+..+-
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~-s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSD-SKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccc-hHHHHHHHhhcccccCCCcchHH
Confidence 4667889999999999999999999999998764 3456899999999999999 9999999877654433544433
Q ss_pred HHHHHHHh-ccCCchHHHHHHHHHHHhc--CC--CchhHHHHHHHHHHhcCCHHHHHHHHHhhccCCCcchHHHHHHHHH
Q 046194 463 INILAAAS-SFSMGKLGHQVHAQVIKYN--VA--NETTIENALLSCYGKCGEMDDCEKIFARMSERRDEVSWNSMISGYI 537 (934)
Q Consensus 463 ~~ll~a~~-~~~~~~~a~~i~~~~~~~g--~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~ 537 (934)
...-+.|. +.+.++++...-..++... .. ..+..+-.+.-+|...-. ...++. -
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~---------------~a~~~s------e 455 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQAR---------------QANLKS------E 455 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhh---------------cCCChH------H
Confidence 33333343 3466677766666555421 11 111222222222321100 000000 0
Q ss_pred hcCChhHHHHHHHHHHHc-CCCCCHhHHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHH
Q 046194 538 HNELLPKAMNLVWFMMQR-GQRLDHFTFATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYAS 616 (934)
Q Consensus 538 ~~g~~~~A~~l~~~m~~~-g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~ 616 (934)
+.....++++.+++..+. +-.|+..-|.++- ++..++++.|.+...+..+.+-..++..+..|.-.+.-.+++.+|+
T Consensus 456 R~~~h~kslqale~av~~d~~dp~~if~lalq--~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al 533 (799)
T KOG4162|consen 456 RDALHKKSLQALEEAVQFDPTDPLVIFYLALQ--YAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEAL 533 (799)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCchHHHHHHHH--HHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHH
Confidence 111123444444444332 1233333332222 3334455555555555555443444555555555555555555555
Q ss_pred HHhccCCC---CCcccccHHHHHHHHcCChHHHHHHHHHHH--------------------------HCCCCCC--hhhH
Q 046194 617 RFFDLMPV---RNVYSWNSMISGYARHGHGDKALTLFSQMK--------------------------LDGPLPD--HVTF 665 (934)
Q Consensus 617 ~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~--------------------------~~g~~p~--~~t~ 665 (934)
.+.+.... .|...-..-+..-..-++.++|+.....+. -.--.|. ..|+
T Consensus 534 ~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~s 613 (799)
T KOG4162|consen 534 DVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTS 613 (799)
T ss_pred HHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhh
Confidence 55544331 111100001111111233333333322221 1100111 1223
Q ss_pred HHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcc--------cHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHH
Q 046194 666 VGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLE--------QFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRT 735 (934)
Q Consensus 666 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~--------~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ 735 (934)
..+..-... ..+.+..-. .+ ......|... .|....+.+.+.++.++|..-+.+. ++.| .+.+|.-
T Consensus 614 r~ls~l~a~--~~~~~~se~-~L-p~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~ 689 (799)
T KOG4162|consen 614 RYLSSLVAS--QLKSAGSEL-KL-PSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYL 689 (799)
T ss_pred HHHHHHHHh--hhhhccccc-cc-CcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHH
Confidence 322221111 001000000 01 1123334432 4556778888999999998777766 5555 3445555
Q ss_pred HHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHH--HHHHHH
Q 046194 736 VLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAK--ARKAMK 793 (934)
Q Consensus 736 ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~--~~~~m~ 793 (934)
.....-.. |+.++|..++..++.++|+++..-..++.+|.+.|+-.-|.. +...+.
T Consensus 690 ~G~~~~~~--~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dal 747 (799)
T KOG4162|consen 690 RGLLLEVK--GQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDAL 747 (799)
T ss_pred hhHHHHHH--HhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHH
Confidence 54555555 999999999999999999999999999999999997666655 555554
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.65 E-value=5e-05 Score=77.68 Aligned_cols=278 Identities=10% Similarity=-0.012 Sum_probs=199.9
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhH----HHHHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHH
Q 046194 525 DEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFT----FATVLSACASVATLERGMEVHACGVRACLEFDVVIGS 600 (934)
Q Consensus 525 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t----~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~ 600 (934)
|+.....+...+...|+.++|...|++.+. +.|+..+ |..+ +...|+.+....+...+....-. ...-+-
T Consensus 231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~--~dpy~i~~MD~Ya~L---L~~eg~~e~~~~L~~~Lf~~~~~-ta~~wf 304 (564)
T KOG1174|consen 231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLC--ANPDNVEAMDLYAVL---LGQEGGCEQDSALMDYLFAKVKY-TASHWF 304 (564)
T ss_pred cHHHHHHHhhhhhhhcCchHHHHHHHHHhh--CChhhhhhHHHHHHH---HHhccCHhhHHHHHHHHHhhhhc-chhhhh
Confidence 667788999999999999999999998876 4555433 3333 34566777766666655442211 111111
Q ss_pred HHHHHHHhcCCHHHHHHHhccCCCCCcc---cccHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhC
Q 046194 601 ALVDMYSKCGRIDYASRFFDLMPVRNVY---SWNSMISGYARHGHGDKALTLFSQMKLDGPLPD-HVTFVGVLSACSHAG 676 (934)
Q Consensus 601 ~li~~y~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g 676 (934)
.-........++..|+.+-+...+-|.. .|-.-...+.+.|++++|.-.|+..+. +.|. -..|..|+.+|...|
T Consensus 305 V~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~ 382 (564)
T KOG1174|consen 305 VHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQK 382 (564)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhc
Confidence 1112234456788888887776644433 443334577889999999999999987 5654 678999999999999
Q ss_pred cHHHHHHHHHHhHHhhCCCCCcccHHHHH-HHHh-hcCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhccCCCcHHHH
Q 046194 677 LVDEGFKHFKSMSQVYGLIPQLEQFSCMV-DLLG-RAGELDKIEEFINKM-PITPNSL-IWRTVLGACCRANCRKTELGR 752 (934)
Q Consensus 677 ~~~~a~~~~~~m~~~~~~~p~~~~y~~li-~~l~-~~g~~~~A~~~~~~m-~~~p~~~-~~~~ll~~~~~~~~~~~~~a~ 752 (934)
...||.-.-+...+. +..+..+.+.+. +.+. .----++|.+++++. .++|+.. ..+.+...|... |..+.+.
T Consensus 383 ~~kEA~~~An~~~~~--~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~E--g~~~D~i 458 (564)
T KOG1174|consen 383 RFKEANALANWTIRL--FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVE--GPTKDII 458 (564)
T ss_pred hHHHHHHHHHHHHHH--hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhh--CccchHH
Confidence 999999887776653 333455555442 2222 222347899999987 7889854 566777788888 9999999
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHHhCCCcCCCceeEEEeCCEEEEEEcCCCCCCChHHHHHHH
Q 046194 753 KAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMKEAEVKKEAGCSWVTMKDGVHVFVAGDESHPEKDLIYEKL 832 (934)
Q Consensus 753 ~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l 832 (934)
...++.+...|++ ..+..|++++...+.+.+|.+.+..... .+|+++.-.+.+
T Consensus 459 ~LLe~~L~~~~D~-~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr--------------------------~dP~~~~sl~Gl 511 (564)
T KOG1174|consen 459 KLLEKHLIIFPDV-NLHNHLGDIMRAQNEPQKAMEYYYKALR--------------------------QDPKSKRTLRGL 511 (564)
T ss_pred HHHHHHHhhcccc-HHHHHHHHHHHHhhhHHHHHHHHHHHHh--------------------------cCccchHHHHHH
Confidence 9999999999875 7789999999999999999988777653 567788888888
Q ss_pred HHHHHHHHH
Q 046194 833 KELNQKMRD 841 (934)
Q Consensus 833 ~~l~~~m~~ 841 (934)
..|.++|++
T Consensus 512 ~~lEK~~~~ 520 (564)
T KOG1174|consen 512 RLLEKSDDE 520 (564)
T ss_pred HHHHhccCC
Confidence 888888763
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.64 E-value=0.00011 Score=82.00 Aligned_cols=285 Identities=11% Similarity=0.043 Sum_probs=152.6
Q ss_pred HHhhccCChhHHHHHHhcCCC--CCccc-HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhc------
Q 046194 299 NMYAKCGTIDDSRSVFRFMIG--KDSVS-WNTMISGLDQNGCYEEAIMNFCAMRRDGLMSSNFSLISTLSSCAS------ 369 (934)
Q Consensus 299 ~~~~~~g~~~~A~~~f~~~~~--~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~------ 369 (934)
..+...|++++|++.++.-.. .|..+ .......+.+.|+.++|..+|+.+.+. .|+...|...+..|..
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r--NPdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR--NPDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHhhhcccc
Confidence 445678889999888876544 24444 344556777888888898888888885 4777777666655541
Q ss_pred cCchHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCccchHHHHHHHHhCCccHHHHHHHHHH
Q 046194 370 LGWIMLGQQIHGEGLKLGLDSDVSVSNALLSLYADAGYLSRCLKVFFLMPEHDQVSWNSVIGAFADSEALVSEAVKYYLD 449 (934)
Q Consensus 370 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~~A~~l~~~ 449 (934)
..+.+...++++.+...- |.......+ .-.+.....+-..+..++..
T Consensus 90 ~~~~~~~~~~y~~l~~~y--p~s~~~~rl-------------------------------~L~~~~g~~F~~~~~~yl~~ 136 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKY--PRSDAPRRL-------------------------------PLDFLEGDEFKERLDEYLRP 136 (517)
T ss_pred cccHHHHHHHHHHHHHhC--ccccchhHh-------------------------------hcccCCHHHHHHHHHHHHHH
Confidence 112333334444333221 111111000 00001001111445555566
Q ss_pred HHHcCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHh----c----------CCCchh--HHHHHHHHHHhcCCHHHH
Q 046194 450 MRRAGWSPNGVTFINILAAASSFSMGKLGHQVHAQVIKY----N----------VANETT--IENALLSCYGKCGEMDDC 513 (934)
Q Consensus 450 m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~----g----------~~~~~~--~~~~li~~~~~~g~~~~A 513 (934)
+...|+++ +|+.|-..+..........++....... + -+|+.. ++.-+...|...|++++|
T Consensus 137 ~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~A 213 (517)
T PF12569_consen 137 QLRKGVPS---LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKA 213 (517)
T ss_pred HHhcCCch---HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHH
Confidence 66666543 3444444444444444444444333221 0 123332 234445566677777777
Q ss_pred HHHHHhhccC-CC-cchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhchhhHHHHHHHHHHHHHhC
Q 046194 514 EKIFARMSER-RD-EVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVATLERGMEVHACGVRAC 591 (934)
Q Consensus 514 ~~~~~~~~~~-p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~ 591 (934)
.+.++...+. |+ +..|..-...|-+.|++.+|.+.++..+... .-|...-+.....+.+.|..+.|.++.....+.+
T Consensus 214 l~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~ 292 (517)
T PF12569_consen 214 LEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTRED 292 (517)
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCC
Confidence 7777765553 43 3345555666777777777777777666542 2244444555556666677777777766666655
Q ss_pred CCCcHhH--------HHHHHHHHHhcCCHHHHHHHhccC
Q 046194 592 LEFDVVI--------GSALVDMYSKCGRIDYASRFFDLM 622 (934)
Q Consensus 592 ~~~~~~~--------~~~li~~y~~~g~~~~A~~~~~~~ 622 (934)
..|-... ......+|.+.|++..|++.|..+
T Consensus 293 ~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v 331 (517)
T PF12569_consen 293 VDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAV 331 (517)
T ss_pred CCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4332111 133445666666666666655544
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.61 E-value=0.00028 Score=80.26 Aligned_cols=172 Identities=17% Similarity=0.063 Sum_probs=89.6
Q ss_pred chHHHHHHHHHHHccCCCCCCCCceeHHHHHHHHhcCccccchHHHHHHHHHHHhCCCCCccchhHHHHHHHhcCChHHH
Q 046194 171 TISVFKLFSRMQREGFRYSLKPNEYTFGSLITAAYSSVLSGSYLLQQILAMVKKAGLLSDLYVGSALVSGFARLGNFYYA 250 (934)
Q Consensus 171 ~~~A~~l~~~m~~~g~~~~~~p~~~t~~~ll~a~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 250 (934)
...|+..|-+-.+..+ -=...|..+=..++..-+... |.+.++...+.+ ..|...+......|++..+++.|
T Consensus 474 ~~~al~ali~alrld~-----~~apaf~~LG~iYrd~~Dm~R--A~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a 545 (1238)
T KOG1127|consen 474 SALALHALIRALRLDV-----SLAPAFAFLGQIYRDSDDMKR--AKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEA 545 (1238)
T ss_pred HHHHHHHHHHHHhccc-----chhHHHHHHHHHHHHHHHHHH--HHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHH
Confidence 5555555544433321 112245555555555554444 666666665543 33556677777888888888888
Q ss_pred HHHHHHhhhcccc---hhhhhhhhh--hhhhHHHHHHHH--H--cCCC-chhHHHHHHHHhhccCChhHHHHHHhcCCCC
Q 046194 251 RKIFEQMIQKNVV---SMNGLMEGR--RKGKEVHGYLIR--S--GLFD-MVAVGNGLVNMYAKCGTIDDSRSVFRFMIGK 320 (934)
Q Consensus 251 ~~l~~~m~~~~~~---~~~~~l~~~--~~~~~~~~~~~~--~--g~~~-~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~ 320 (934)
..+.-...++++. .|+-.-.++ -++...|+.+.. + ...| |...+..|-.+|.++|++..|.++|++...-
T Consensus 546 ~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L 625 (1238)
T KOG1127|consen 546 FEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLL 625 (1238)
T ss_pred HHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhc
Confidence 7775444443321 111111111 112233333321 1 1222 3445667777777777777777777766554
Q ss_pred CcccHHHH---HHHHHhCCChhHHHHHHHHHHH
Q 046194 321 DSVSWNTM---ISGLDQNGCYEEAIMNFCAMRR 350 (934)
Q Consensus 321 ~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~ 350 (934)
++.+|-.- ...-+..|.+.+|++.+.....
T Consensus 626 rP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 626 RPLSKYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred CcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 44333221 1123456777777777665543
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.61 E-value=0.0015 Score=74.72 Aligned_cols=638 Identities=12% Similarity=0.053 Sum_probs=315.8
Q ss_pred hhHHHHHHHHhcCCCC-chhhHHHHHHhhhCCCChHHHHHHhhccCC---CCcccHHHHHHHHHcCCCchHHHHHHHHHH
Q 046194 107 GMQVHCLVLKSNQTFD-GLVSNVLIAMYGSCLESTDCARRIFEEIET---RDLISWNSIISVYSQRGDTISVFKLFSRMQ 182 (934)
Q Consensus 107 ~~~~~~~~~~~g~~~~-~~~~~~li~~y~~~~g~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 182 (934)
+..++..+.....+++ ...+..|-..|... -+...|++.|+...+ -|..+|-.....|++..+++.|+.+.-.--
T Consensus 475 ~~al~ali~alrld~~~apaf~~LG~iYrd~-~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~ 553 (1238)
T KOG1127|consen 475 ALALHALIRALRLDVSLAPAFAFLGQIYRDS-DDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAA 553 (1238)
T ss_pred HHHHHHHHHHHhcccchhHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHh
Confidence 3444444444444443 35677788888887 788899999987664 466689999999999999999999833222
Q ss_pred HccCCCCCCCCceeHHHHHHHHh--cCccccchHHHHHHHHHHHhCCC-CCccchhHHHHHHHhcCChHHHHHHHHHhhh
Q 046194 183 REGFRYSLKPNEYTFGSLITAAY--SSVLSGSYLLQQILAMVKKAGLL-SDLYVGSALVSGFARLGNFYYARKIFEQMIQ 259 (934)
Q Consensus 183 ~~g~~~~~~p~~~t~~~ll~a~~--~~~~~~~~~a~~i~~~~~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 259 (934)
+.. +.-...++-+-++.. ..++... +..-++.. ..+. -|...|..|..+|.++|++..|.++|.+...
T Consensus 554 qka-----~a~~~k~nW~~rG~yyLea~n~h~--aV~~fQsA--LR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~ 624 (1238)
T KOG1127|consen 554 QKA-----PAFACKENWVQRGPYYLEAHNLHG--AVCEFQSA--LRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASL 624 (1238)
T ss_pred hhc-----hHHHHHhhhhhccccccCccchhh--HHHHHHHH--hcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHh
Confidence 221 111112222222221 1122211 22222222 2233 3667889999999999999999999999987
Q ss_pred cccchhhhhh---------hhhhhhhHHHHHHHHHcCCCchhHHHHHHHHhhc-------cCChhHHHHHHhcCCCCCcc
Q 046194 260 KNVVSMNGLM---------EGRRKGKEVHGYLIRSGLFDMVAVGNGLVNMYAK-------CGTIDDSRSVFRFMIGKDSV 323 (934)
Q Consensus 260 ~~~~~~~~~l---------~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~-------~g~~~~A~~~f~~~~~~~~~ 323 (934)
-++.+|-+.. +....+....+.++..- ..-....+.|...+.+ .|-...|...|+.- ..
T Consensus 625 LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~-s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eks----ie 699 (1238)
T KOG1127|consen 625 LRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAF-SLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKS----IE 699 (1238)
T ss_pred cCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-HHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHH----HH
Confidence 7766554433 11111112222111110 0000011111111111 12222222222211 11
Q ss_pred cHH-HHHHHHHhCCC----hhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCch---H---HHHHHHHHHhhhCCCCch
Q 046194 324 SWN-TMISGLDQNGC----YEEAIMNFCAMRRDGLMSSNFSLISTLSSCASLGWI---M---LGQQIHGEGLKLGLDSDV 392 (934)
Q Consensus 324 ~~~-~li~~~~~~g~----~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~---~---~a~~i~~~~~~~g~~~~~ 392 (934)
.+. +++...+.... ...|..+|.+.. .. .|+......+..-.-..+.. + .|-+.+-.-+ .+..+.
T Consensus 700 ~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hl--sl~~~~ 775 (1238)
T KOG1127|consen 700 SFIVSLIHSLQSDRLQWIVASDACYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHL--SLAIHM 775 (1238)
T ss_pred HHHHHHHHhhhhhHHHHHHHhHHHHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHH--HHhhcc
Confidence 111 11111110000 122333333332 11 22222222222212222222 1 1111111111 111223
Q ss_pred hHHHHHHHHHHh----cC----ChHHHHHHHhhCC---CCCccchHHHHHHHHhCCccHHHHHHHHHHHHHcCCCCCccc
Q 046194 393 SVSNALLSLYAD----AG----YLSRCLKVFFLMP---EHDQVSWNSVIGAFADSEALVSEAVKYYLDMRRAGWSPNGVT 461 (934)
Q Consensus 393 ~~~~~li~~y~~----~g----~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t 461 (934)
..|..|..-|.+ +| +...|...+.... ..+...||.|--. ...|.+ .-|..-|-+-... -+-...+
T Consensus 776 ~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnv-a~aQHCfIks~~s-ep~~~~~ 852 (1238)
T KOG1127|consen 776 YPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNV-ACAQHCFIKSRFS-EPTCHCQ 852 (1238)
T ss_pred chHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchh-hhhhhhhhhhhhc-cccchhh
Confidence 333333333322 22 2234556665543 3567778877655 444555 5555555544432 2334556
Q ss_pred HHHHHHHHhccCCchHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhcc------C-CCcchHHHHHH
Q 046194 462 FINILAAASSFSMGKLGHQVHAQVIKYNVANETTIENALLSCYGKCGEMDDCEKIFARMSE------R-RDEVSWNSMIS 534 (934)
Q Consensus 462 ~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------~-p~~~~~~~li~ 534 (934)
|..+--.|....+++.|.+.+.......+ .+...|--..-.-...|+.-++..+|..-.. + |+..-|-....
T Consensus 853 W~NlgvL~l~n~d~E~A~~af~~~qSLdP-~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te 931 (1238)
T KOG1127|consen 853 WLNLGVLVLENQDFEHAEPAFSSVQSLDP-LNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATE 931 (1238)
T ss_pred eeccceeEEecccHHHhhHHHHhhhhcCc-hhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHH
Confidence 66666667778888888888877655432 2222332222223446667777777765211 1 45555655555
Q ss_pred HHHhcCChhHHHHHHHHHHH---------cCCCCCHhHHHHHHHHHhchhhHHHHHHHHHHHHHh-CCCCcHhHHH----
Q 046194 535 GYIHNELLPKAMNLVWFMMQ---------RGQRLDHFTFATVLSACASVATLERGMEVHACGVRA-CLEFDVVIGS---- 600 (934)
Q Consensus 535 ~~~~~g~~~~A~~l~~~m~~---------~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~-~~~~~~~~~~---- 600 (934)
....+|+.++-+..-+++-. .+.+-+.+.|.......-+.+..+.+.....+.+.. ...-|...||
T Consensus 932 ~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~ 1011 (1238)
T KOG1127|consen 932 IHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKP 1011 (1238)
T ss_pred HHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Confidence 66777777665554444322 133444577777776666777666666555543321 1112333344
Q ss_pred HHHHHHHhcCCHHHHHHHhccCCC-CCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh----hhHHHHHHHHHhh
Q 046194 601 ALVDMYSKCGRIDYASRFFDLMPV-RNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDH----VTFVGVLSACSHA 675 (934)
Q Consensus 601 ~li~~y~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~ll~a~~~~ 675 (934)
.+...+...|.++.|..-+..... -|..+-..-+.. .-.|+++++++.|++... +.-+. +....++-+....
T Consensus 1012 ~~gRL~lslgefe~A~~a~~~~~~evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLs--is~se~d~vvLl~kva~~~g~~ 1088 (1238)
T KOG1127|consen 1012 DAGRLELSLGEFESAKKASWKEWMEVDEDIRGTDLTL-FFKNDFFSSLEFFEQALS--ISNSESDKVVLLCKVAVCMGLA 1088 (1238)
T ss_pred hhhhhhhhhcchhhHhhhhcccchhHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhh--hcccccchhhhhHHHHHHHhhc
Confidence 234455667778877776665441 121111111222 345789999999999876 22222 2233344444566
Q ss_pred CcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCCh---HHHHHHHHhCC----CCCCHHHHHHHHHHHHhccCCCc
Q 046194 676 GLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGEL---DKIEEFINKMP----ITPNSLIWRTVLGACCRANCRKT 748 (934)
Q Consensus 676 g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~---~~A~~~~~~m~----~~p~~~~~~~ll~~~~~~~~~~~ 748 (934)
+.-+.|...+-+... --+|+....-+|.-++.-..+- .-+++-+.+.+ +.-++.-...++.+ .. |+-
T Consensus 1089 ~~k~~A~~lLfe~~~--ls~~~~~sll~L~A~~ild~da~~ssaileel~kl~k~e~~~~~~~ll~e~i~~--~~--~r~ 1162 (1238)
T KOG1127|consen 1089 RQKNDAQFLLFEVKS--LSKVQASSLLPLPAVYILDADAHGSSAILEELEKLLKLEWFCWPPGLLKELIYA--LQ--GRS 1162 (1238)
T ss_pred ccchHHHHHHHHHHH--hCccchhhHHHHHHHHHHhhhhhhhHHHHHHHHHhhhhHHhccChhHHHHHHHH--Hh--hhh
Confidence 777777776655554 2345554444443333222221 12222222221 11122222223322 33 788
Q ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 046194 749 ELGRKAANMLFEMEPQNAVNYVLLANMY 776 (934)
Q Consensus 749 ~~a~~~~~~~~~~~p~~~~~y~~l~~~~ 776 (934)
...++..++..-..|.|+..|..|..=|
T Consensus 1163 ~~vk~~~qr~~h~~P~~~~~WslL~vry 1190 (1238)
T KOG1127|consen 1163 VAVKKQIQRAVHSNPGDPALWSLLSVRY 1190 (1238)
T ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 8899999999999999999999887533
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.1e-05 Score=76.32 Aligned_cols=190 Identities=13% Similarity=0.071 Sum_probs=123.6
Q ss_pred HhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCC---CCCcccccHHHHHHHHcCChHHHH
Q 046194 571 CASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMP---VRNVYSWNSMISGYARHGHGDKAL 647 (934)
Q Consensus 571 ~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~ 647 (934)
|.+.|+...|+.-++.+++.. +.+..++..+...|.+.|+.+.|.+.|+... ..+-...|..-.-+|.+|++++|.
T Consensus 45 YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~ 123 (250)
T COG3063 45 YLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAM 123 (250)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHH
Confidence 333344444444444443321 1134555666667777777777777777554 234456666677777788888888
Q ss_pred HHHHHHHHCCCCCC-hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhhcCChHHHHHHHHhC-
Q 046194 648 TLFSQMKLDGPLPD-HVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGRAGELDKIEEFINKM- 724 (934)
Q Consensus 648 ~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m- 724 (934)
..|++....---|. ..||..+.-+..+.|+.+.|..+|++..+ +.|+ ......|.+.....|++-+|..+++..
T Consensus 124 q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~---~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~ 200 (250)
T COG3063 124 QQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE---LDPQFPPALLELARLHYKAGDYAPARLYLERYQ 200 (250)
T ss_pred HHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH---hCcCCChHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 88888776432222 45677776666778888888888887766 3455 666777888888888888888888776
Q ss_pred -CCCCCHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCC
Q 046194 725 -PITPNSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNA 766 (934)
Q Consensus 725 -~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 766 (934)
...++.....-.+..-... ||.+.+.+.-..+....|...
T Consensus 201 ~~~~~~A~sL~L~iriak~~--gd~~~a~~Y~~qL~r~fP~s~ 241 (250)
T COG3063 201 QRGGAQAESLLLGIRIAKRL--GDRAAAQRYQAQLQRLFPYSE 241 (250)
T ss_pred hcccccHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHhCCCcH
Confidence 3446666655555555666 887777777777777777653
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.55 E-value=2e-06 Score=89.25 Aligned_cols=249 Identities=10% Similarity=0.040 Sum_probs=155.0
Q ss_pred HHhcCCHHHHHHHHHhhccC-C--CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhchhhHHHH
Q 046194 504 YGKCGEMDDCEKIFARMSER-R--DEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVATLERG 580 (934)
Q Consensus 504 ~~~~g~~~~A~~~~~~~~~~-p--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a 580 (934)
+.-.|.+..+..-.+ .... | +.....-+.++|.-.|+++.++. ++... -.|.......+...+....+-+.+
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~---ei~~~-~~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLS---EIKKS-SSPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHH---HS-TT-SSCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHH---HhccC-CChhHHHHHHHHHHHhCccchHHH
Confidence 334566666665444 2111 1 22234445566777777665442 22222 255555555555545443444444
Q ss_pred HHHHHHHHHhCCC-CcHhHHHHHHHHHHhcCCHHHHHHHhccCCCCCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCC
Q 046194 581 MEVHACGVRACLE-FDVVIGSALVDMYSKCGRIDYASRFFDLMPVRNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPL 659 (934)
Q Consensus 581 ~~i~~~~~~~~~~-~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 659 (934)
..-+......... .+..+......+|...|++++|+++++.. .+.......+..|.+.++++.|.+.++.|.+. .
T Consensus 86 l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~ 161 (290)
T PF04733_consen 86 LEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--D 161 (290)
T ss_dssp HHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--S
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--C
Confidence 4444333322222 23344444456678899999999999876 45566667888999999999999999999873 3
Q ss_pred CChhhHHHHHHHHHh--h--CcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHH
Q 046194 660 PDHVTFVGVLSACSH--A--GLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIW 733 (934)
Q Consensus 660 p~~~t~~~ll~a~~~--~--g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~ 733 (934)
.| .+...+..++.. . ..+.+|..+|+++.+. ..+++...+.+..+....|++++|.+++++. ...| ++.++
T Consensus 162 eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~--~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~L 238 (290)
T PF04733_consen 162 ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK--FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTL 238 (290)
T ss_dssp CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC--S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHH
T ss_pred Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHH
Confidence 44 455556665443 2 3689999999998774 4577788888999999999999999998875 4445 35566
Q ss_pred HHHHHHHHhccCCCc-HHHHHHHHHHHhcCCCCC
Q 046194 734 RTVLGACCRANCRKT-ELGRKAANMLFEMEPQNA 766 (934)
Q Consensus 734 ~~ll~~~~~~~~~~~-~~a~~~~~~~~~~~p~~~ 766 (934)
-.++-.+... |+. +.+.+...++....|+.+
T Consensus 239 aNliv~~~~~--gk~~~~~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 239 ANLIVCSLHL--GKPTEAAERYLSQLKQSNPNHP 270 (290)
T ss_dssp HHHHHHHHHT--T-TCHHHHHHHHHCHHHTTTSH
T ss_pred HHHHHHHHHh--CCChhHHHHHHHHHHHhCCCCh
Confidence 6666666666 555 778888888888888754
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.53 E-value=3.1e-05 Score=86.35 Aligned_cols=123 Identities=15% Similarity=0.131 Sum_probs=81.5
Q ss_pred HHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhhcCChHHHHHHHHhC-CCCCCHHHHHH-HHHHHHh
Q 046194 666 VGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGRAGELDKIEEFINKM-PITPNSLIWRT-VLGACCR 742 (934)
Q Consensus 666 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p~~~~~~~-ll~~~~~ 742 (934)
..+...|.+.|++++|+++.+...+ ..|+ ++.|..-...|-+.|++++|.+.++.. .+.+...-.|+ ....+.+
T Consensus 198 ~~lAqhyd~~g~~~~Al~~Id~aI~---htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LR 274 (517)
T PF12569_consen 198 YFLAQHYDYLGDYEKALEYIDKAIE---HTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLR 274 (517)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHH
Confidence 3344456778888888888887765 4566 677777788888888888888888776 44443333333 3334444
Q ss_pred ccCCCcHHHHHHHHHHHhcCC--CC-------CchHHHHHHHHHcCCChHHHHHHHHHHH
Q 046194 743 ANCRKTELGRKAANMLFEMEP--QN-------AVNYVLLANMYASGGKWEDVAKARKAMK 793 (934)
Q Consensus 743 ~~~~~~~~a~~~~~~~~~~~p--~~-------~~~y~~l~~~~~~~g~~~~a~~~~~~m~ 793 (934)
. |+++.|+..+.....-+- .. .....-.+..|.+.|++..|.+-+..+.
T Consensus 275 a--~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 275 A--GRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVL 332 (517)
T ss_pred C--CCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4 888888887777655542 11 1112456778889999998888766654
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.53 E-value=6.8e-08 Score=63.25 Aligned_cols=34 Identities=44% Similarity=0.641 Sum_probs=29.5
Q ss_pred hcCCCCchhhhHHHHHHhhcCChhhHHHhhccCC
Q 046194 14 HGFAYDVFLCNTLINVYVRVGDLASASKLFDEMP 47 (934)
Q Consensus 14 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~ 47 (934)
.|+.||.++||.||.+||+.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3788999999999999999999999999988885
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.46 E-value=5.5e-06 Score=81.81 Aligned_cols=224 Identities=11% Similarity=0.017 Sum_probs=159.0
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCchHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhc
Q 046194 326 NTMISGLDQNGCYEEAIMNFCAMRRDGLMSSNFSLISTLSSCASLGWIMLGQQIHGEGLKLGLDSDVSVSNALLSLYADA 405 (934)
Q Consensus 326 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~ 405 (934)
+.|.++|.+.|.+.+|.+.|+.-++. .|-..||..+-+.+.+..+++.|..++...++. ++-|+....-....+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 56777888888888888888777764 566667777778888888888888777776654 445565666677777888
Q ss_pred CChHHHHHHHhhCCC---CCccchHHHHHHHHhCCccHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhccCCchHHHHHH
Q 046194 406 GYLSRCLKVFFLMPE---HDQVSWNSVIGAFADSEALVSEAVKYYLDMRRAGWSPNGVTFINILAAASSFSMGKLGHQVH 482 (934)
Q Consensus 406 g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~ 482 (934)
++.++|.++++...+ .++.+...+..+|.-.+++ +-|+.+|+++.+.|+. +...|..+--.|.-.++++.+..-|
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~P-E~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNP-EMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCCh-HHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence 888899888887754 3566666777788888888 9999999999998864 4556666666777777888877777
Q ss_pred HHHHHhcCCCc--hhHHHHHHHHHHhcCCHHHHHHHHHhhccC-C-CcchHHHHHHHHHhcCChhHHHHHHHHHHH
Q 046194 483 AQVIKYNVANE--TTIENALLSCYGKCGEMDDCEKIFARMSER-R-DEVSWNSMISGYIHNELLPKAMNLVWFMMQ 554 (934)
Q Consensus 483 ~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 554 (934)
......--.|+ ..+|-.|-....-.|++..|.+.|.-.... | +..++|.|.-.-.+.|+.++|..++.....
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 77665444333 245555655666667777777777765543 2 345566666666677777777777766554
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.44 E-value=0.00025 Score=70.91 Aligned_cols=307 Identities=12% Similarity=0.078 Sum_probs=167.9
Q ss_pred HHHHHHhcCChHHHHHHHhhCCCCCccchHHHH---HHHHhCCccHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhccCC
Q 046194 398 LLSLYADAGYLSRCLKVFFLMPEHDQVSWNSVI---GAFADSEALVSEAVKYYLDMRRAGWSPNGVTFINILAAASSFSM 474 (934)
Q Consensus 398 li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li---~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 474 (934)
|...+...|++.+|+.-|....+-|...|-++. ..|...|+. ..|+.-|...++ .+||-..-.
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGks-k~al~Dl~rVle--lKpDF~~AR----------- 109 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKS-KAALQDLSRVLE--LKPDFMAAR----------- 109 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCC-ccchhhHHHHHh--cCccHHHHH-----------
Confidence 444555667777777777777776666666554 356666666 666655555543 234321110
Q ss_pred chHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccC-CCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 046194 475 GKLGHQVHAQVIKYNVANETTIENALLSCYGKCGEMDDCEKIFARMSER-RDEVSWNSMISGYIHNELLPKAMNLVWFMM 553 (934)
Q Consensus 475 ~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 553 (934)
-.-...+.+.|.++.|..-|+.+.+. |+..+ ...++.+. .+..++.
T Consensus 110 -----------------------iQRg~vllK~Gele~A~~DF~~vl~~~~s~~~---~~eaqskl-------~~~~e~~ 156 (504)
T KOG0624|consen 110 -----------------------IQRGVVLLKQGELEQAEADFDQVLQHEPSNGL---VLEAQSKL-------ALIQEHW 156 (504)
T ss_pred -----------------------HHhchhhhhcccHHHHHHHHHHHHhcCCCcch---hHHHHHHH-------HhHHHHH
Confidence 01112456778888888888877664 22111 11111111 1111111
Q ss_pred HcCCCCCHhHHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccC---CCCCcccc
Q 046194 554 QRGQRLDHFTFATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLM---PVRNVYSW 630 (934)
Q Consensus 554 ~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~---~~~~~~~~ 630 (934)
.....+..+...|+...+......+++.. +.|...+..-.+.|...|++..|+.=+... ...|....
T Consensus 157 ---------~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ 226 (504)
T KOG0624|consen 157 ---------VLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGH 226 (504)
T ss_pred ---------HHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHH
Confidence 11122233344556666666666655531 236667777777788888887776555443 34455566
Q ss_pred cHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHH-----------HH--HHHhhCcHHHHHHHHHHhHHhhCCCCC
Q 046194 631 NSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGV-----------LS--ACSHAGLVDEGFKHFKSMSQVYGLIPQ 697 (934)
Q Consensus 631 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l-----------l~--a~~~~g~~~~a~~~~~~m~~~~~~~p~ 697 (934)
--+-..+...|+.+.++...++-.+ +.||....... -+ .....+.|.++++-.+...+ ..|.
T Consensus 227 ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk---~ep~ 301 (504)
T KOG0624|consen 227 YKISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLK---NEPE 301 (504)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh---cCCc
Confidence 6666677777888888877777776 56775431111 00 12234445555555554443 2333
Q ss_pred -----cccHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCch
Q 046194 698 -----LEQFSCMVDLLGRAGELDKIEEFINKM-PITPN-SLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVN 768 (934)
Q Consensus 698 -----~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 768 (934)
...+..+-.++...|++.+|+....+. .+.|| +.++.--..++... ..++.|..-++++.+.+|+|...
T Consensus 302 ~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~d--E~YD~AI~dye~A~e~n~sn~~~ 377 (504)
T KOG0624|consen 302 ETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGD--EMYDDAIHDYEKALELNESNTRA 377 (504)
T ss_pred ccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhh--HHHHHHHHHHHHHHhcCcccHHH
Confidence 122333444555666777777666655 55555 55555555666655 66777777777777777766443
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.44 E-value=0.00016 Score=77.10 Aligned_cols=85 Identities=19% Similarity=0.158 Sum_probs=49.3
Q ss_pred HHHhcCChHHHHHHHHHhhhcccchhhhhhhhhhhhhHHHHHHHHHcCCCchhHHHHHHHHhhccCChhHHHHHHhcCCC
Q 046194 240 GFARLGNFYYARKIFEQMIQKNVVSMNGLMEGRRKGKEVHGYLIRSGLFDMVAVGNGLVNMYAKCGTIDDSRSVFRFMIG 319 (934)
Q Consensus 240 ~~~~~g~~~~A~~l~~~m~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~ 319 (934)
+.+..|+++.|...|-+...-+ ++|.+.|+.-...|++.|++++|.+=-.+-.+
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~--------------------------p~nhvlySnrsaa~a~~~~~~~al~da~k~~~ 64 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLS--------------------------PTNHVLYSNRSAAYASLGSYEKALKDATKTRR 64 (539)
T ss_pred hhcccccHHHHHHHHHHHHccC--------------------------CCccchhcchHHHHHHHhhHHHHHHHHHHHHh
Confidence 4455677777777776655433 23455566666667777777666654433322
Q ss_pred --CC-cccHHHHHHHHHhCCChhHHHHHHHHHHH
Q 046194 320 --KD-SVSWNTMISGLDQNGCYEEAIMNFCAMRR 350 (934)
Q Consensus 320 --~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 350 (934)
|+ ...|+-...++.-.|++++|+.-|.+-++
T Consensus 65 l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~ 98 (539)
T KOG0548|consen 65 LNPDWAKGYSRKGAALFGLGDYEEAILAYSEGLE 98 (539)
T ss_pred cCCchhhHHHHhHHHHHhcccHHHHHHHHHHHhh
Confidence 22 12455666666666667777766666554
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.43 E-value=0.00016 Score=79.25 Aligned_cols=292 Identities=10% Similarity=-0.037 Sum_probs=155.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhccC-C-Ccch---HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH-hHHHH---HH
Q 046194 498 NALLSCYGKCGEMDDCEKIFARMSER-R-DEVS---WNSMISGYIHNELLPKAMNLVWFMMQRGQRLDH-FTFAT---VL 568 (934)
Q Consensus 498 ~~li~~~~~~g~~~~A~~~~~~~~~~-p-~~~~---~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~---ll 568 (934)
..+...+...|+.+++.+.+...... | +... .......+...|++++|.+.+++.... .|+. ..+.. ..
T Consensus 10 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~~~~~~ 87 (355)
T cd05804 10 AAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDD--YPRDLLALKLHLGAF 87 (355)
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHhHHHH
Confidence 34444455556666655555444332 1 2111 112223455677777777777777664 2332 22221 11
Q ss_pred HHHhchhhHHHHHHHHHHHHHhCCCC-cHhHHHHHHHHHHhcCCHHHHHHHhccCCC---CCcccccHHHHHHHHcCChH
Q 046194 569 SACASVATLERGMEVHACGVRACLEF-DVVIGSALVDMYSKCGRIDYASRFFDLMPV---RNVYSWNSMISGYARHGHGD 644 (934)
Q Consensus 569 ~a~~~~~~~~~a~~i~~~~~~~~~~~-~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~ 644 (934)
......+..+.+.+.+.. .....| .......+...+...|++++|.+.+++... .+...+..+...|...|+++
T Consensus 88 ~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~ 165 (355)
T cd05804 88 GLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFK 165 (355)
T ss_pred HhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHH
Confidence 111123333444444333 111222 233444556677788888888888877653 23446667777788888888
Q ss_pred HHHHHHHHHHHCCC-CCCh--hhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcc---cHHHHHHHHhhcCChHHHH
Q 046194 645 KALTLFSQMKLDGP-LPDH--VTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLE---QFSCMVDLLGRAGELDKIE 718 (934)
Q Consensus 645 ~A~~l~~~m~~~g~-~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~---~y~~li~~l~~~g~~~~A~ 718 (934)
+|+.++++...... .|+. ..|..+...+...|++++|..+++.........+... ....+...+...|..+.+.
T Consensus 166 eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~ 245 (355)
T cd05804 166 EGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGD 245 (355)
T ss_pred HHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHH
Confidence 88888887776421 1222 2244566667788888888888887743211111111 1112233333444333332
Q ss_pred HH--H-HhC-CCCCC---HHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCC---------CCCchHHHHHHHHHcCCCh
Q 046194 719 EF--I-NKM-PITPN---SLIWRTVLGACCRANCRKTELGRKAANMLFEMEP---------QNAVNYVLLANMYASGGKW 782 (934)
Q Consensus 719 ~~--~-~~m-~~~p~---~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p---------~~~~~y~~l~~~~~~~g~~ 782 (934)
.+ + ... +..|. .........++... |+.+.+....+.+....- .......+.+.++...|++
T Consensus 246 ~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~--~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~ 323 (355)
T cd05804 246 RWEDLADYAAWHFPDHGLAFNDLHAALALAGA--GDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNY 323 (355)
T ss_pred HHHHHHHHHHhhcCcccchHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCH
Confidence 22 1 111 11011 12222444455555 788888887776654321 1355677888899999999
Q ss_pred HHHHHHHHHHHhC
Q 046194 783 EDVAKARKAMKEA 795 (934)
Q Consensus 783 ~~a~~~~~~m~~~ 795 (934)
++|.+.+......
T Consensus 324 ~~A~~~L~~al~~ 336 (355)
T cd05804 324 ATALELLGPVRDD 336 (355)
T ss_pred HHHHHHHHHHHHH
Confidence 9999988777654
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.2e-05 Score=86.16 Aligned_cols=249 Identities=12% Similarity=0.094 Sum_probs=183.7
Q ss_pred HhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCC---CCcccccHHHHHHHHcCChHHHH
Q 046194 571 CASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPV---RNVYSWNSMISGYARHGHGDKAL 647 (934)
Q Consensus 571 ~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 647 (934)
+.+.|++..|.-.|+..++.... +...|--|.-.-...++-..|+..+.+..+ .|....-.|.-.|...|.-.+|+
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 35678888888888888876422 677777777777778887888888887764 35557777778888899999999
Q ss_pred HHHHHHHHCCCC--------CChhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHH
Q 046194 648 TLFSQMKLDGPL--------PDHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEE 719 (934)
Q Consensus 648 ~l~~~m~~~g~~--------p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~ 719 (934)
..++.-+....+ ++..+-.. ....+.....+..++|-.+....+..+|+..+.+|.-+|--.|.+++|.+
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 999887653210 01000000 12223344556667777777666767889999999999999999999999
Q ss_pred HHHhC-CCCC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHHhCCC
Q 046194 720 FINKM-PITP-NSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMKEAEV 797 (934)
Q Consensus 720 ~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 797 (934)
-|+.. .++| |...||-|...+... .+.++|..+|.+++++.|.-......|+-.|...|.++||.+.+-......-
T Consensus 452 cf~~AL~v~Pnd~~lWNRLGAtLAN~--~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ 529 (579)
T KOG1125|consen 452 CFEAALQVKPNDYLLWNRLGATLANG--NRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQR 529 (579)
T ss_pred HHHHHHhcCCchHHHHHHhhHHhcCC--cccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhh
Confidence 99987 7777 567899999999888 8999999999999999999999999999999999999999998776654322
Q ss_pred cCCCceeEEEeCCEEEEEEcCCCCCCChHHHHHHHHHHHHHHH
Q 046194 798 KKEAGCSWVTMKDGVHVFVAGDESHPEKDLIYEKLKELNQKMR 840 (934)
Q Consensus 798 ~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~ 840 (934)
+-..+ .+..++ ++.||..|......|.
T Consensus 530 ks~~~---------------~~~~~~-se~iw~tLR~als~~~ 556 (579)
T KOG1125|consen 530 KSRNH---------------NKAPMA-SENIWQTLRLALSAMN 556 (579)
T ss_pred ccccc---------------ccCCcc-hHHHHHHHHHHHHHcC
Confidence 11000 011122 6788888886555553
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.40 E-value=2.7e-07 Score=60.40 Aligned_cols=34 Identities=24% Similarity=0.438 Sum_probs=32.1
Q ss_pred hCCCCCccchhHHHHHHHhcCChHHHHHHHHHhh
Q 046194 225 AGLLSDLYVGSALVSGFARLGNFYYARKIFEQMI 258 (934)
Q Consensus 225 ~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 258 (934)
.|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 4789999999999999999999999999999984
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.38 E-value=4.7e-06 Score=86.49 Aligned_cols=243 Identities=9% Similarity=-0.024 Sum_probs=157.7
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHH
Q 046194 535 GYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDY 614 (934)
Q Consensus 535 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~ 614 (934)
-+.-.|++..++.-.. .....-..+..+...+.+++...|..+.+ ...+.+.. .|.......+...+...++-+.
T Consensus 10 n~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~v---l~ei~~~~-~~~l~av~~la~y~~~~~~~e~ 84 (290)
T PF04733_consen 10 NQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSV---LSEIKKSS-SPELQAVRLLAEYLSSPSDKES 84 (290)
T ss_dssp HHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHH---HHHS-TTS-SCCCHHHHHHHHHHCTSTTHHC
T ss_pred HHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHH---HHHhccCC-ChhHHHHHHHHHHHhCccchHH
Confidence 3445788888886555 22222222334555667777777876543 33333333 5666665556555544456666
Q ss_pred HHHHhccCC-CCCc---ccccH-HHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHHHHHHHHhH
Q 046194 615 ASRFFDLMP-VRNV---YSWNS-MISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGFKHFKSMS 689 (934)
Q Consensus 615 A~~~~~~~~-~~~~---~~~~~-li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 689 (934)
+..-+++.. .+.. .++.. ....+...|++++|++++++- .+.......+..+.+.++++.|.+.++.|.
T Consensus 85 ~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~ 158 (290)
T PF04733_consen 85 ALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQ 158 (290)
T ss_dssp HHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 666665443 2211 12222 223455679999999988753 344556667788899999999999999997
Q ss_pred HhhCCCCCcccHHHHHH----HHhhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCC
Q 046194 690 QVYGLIPQLEQFSCMVD----LLGRAGELDKIEEFINKM--PITPNSLIWRTVLGACCRANCRKTELGRKAANMLFEMEP 763 (934)
Q Consensus 690 ~~~~~~p~~~~y~~li~----~l~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p 763 (934)
+ +..| .+...+.. ...-.+++.+|.-+|+++ ...+++.+.+.+..+.... |++++|+..++.+++.+|
T Consensus 159 ~---~~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~--~~~~eAe~~L~~al~~~~ 232 (290)
T PF04733_consen 159 Q---IDED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQL--GHYEEAEELLEEALEKDP 232 (290)
T ss_dssp C---CSCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHC--T-HHHHHHHHHHHCCC-C
T ss_pred h---cCCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHhcc
Confidence 5 4444 33333333 333335799999999999 4557788888888888788 999999999999999999
Q ss_pred CCCchHHHHHHHHHcCCCh-HHHHHHHHHHHh
Q 046194 764 QNAVNYVLLANMYASGGKW-EDVAKARKAMKE 794 (934)
Q Consensus 764 ~~~~~y~~l~~~~~~~g~~-~~a~~~~~~m~~ 794 (934)
.++.+...++-+..-.|+. +.+.+.+..++.
T Consensus 233 ~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 233 NDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred CCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 9999999999999999998 667778887774
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.32 E-value=2.9e-05 Score=79.38 Aligned_cols=179 Identities=12% Similarity=0.026 Sum_probs=105.8
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHhccCCC--CCc----ccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChh----h
Q 046194 595 DVVIGSALVDMYSKCGRIDYASRFFDLMPV--RNV----YSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHV----T 664 (934)
Q Consensus 595 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----t 664 (934)
....+-.+...|.+.|++++|...|+++.. |+. .+|..+..+|...|++++|+..|+++.+. .|+.. +
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHHH
Confidence 344455556666666777777776665542 221 24455666666667777777777776663 34322 2
Q ss_pred HHHHHHHHHhh--------CcHHHHHHHHHHhHHhhCCCCCcc-cHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHH
Q 046194 665 FVGVLSACSHA--------GLVDEGFKHFKSMSQVYGLIPQLE-QFSCMVDLLGRAGELDKIEEFINKMPITPNSLIWRT 735 (934)
Q Consensus 665 ~~~ll~a~~~~--------g~~~~a~~~~~~m~~~~~~~p~~~-~y~~li~~l~~~g~~~~A~~~~~~m~~~p~~~~~~~ 735 (934)
+..+..++... |+.++|.+.|+.+.+. .|+.. .+..+... +....... .....
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~----~~~~~~~~-----------~~~~~ 171 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRM----DYLRNRLA-----------GKELY 171 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHH----HHHHHHHH-----------HHHHH
Confidence 33333334333 5566666666666552 23321 11111110 00000000 01123
Q ss_pred HHHHHHhccCCCcHHHHHHHHHHHhcCCCCC---chHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 046194 736 VLGACCRANCRKTELGRKAANMLFEMEPQNA---VNYVLLANMYASGGKWEDVAKARKAMKEA 795 (934)
Q Consensus 736 ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~y~~l~~~~~~~g~~~~a~~~~~~m~~~ 795 (934)
+...+... |+.+.|...++.+++..|+++ ..+..++.+|...|++++|.+.++.+..+
T Consensus 172 ~a~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 172 VARFYLKR--GAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHc--CChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 44556666 999999999999999977654 68899999999999999999998887654
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.0079 Score=64.45 Aligned_cols=431 Identities=13% Similarity=0.119 Sum_probs=235.3
Q ss_pred CCchhHHHHHHHHhhccCChhHHHHHHhcCCCC---CcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHH
Q 046194 288 FDMVAVGNGLVNMYAKCGTIDDSRSVFRFMIGK---DSVSWNTMISGLDQNGCYEEAIMNFCAMRRDGLMSSNFSLISTL 364 (934)
Q Consensus 288 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 364 (934)
+.|+..|+.||.-+... .+++++..++++..+ ....|..-|.+-....+++....+|.+.+..-+..| -|..-|
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlD--LW~lYl 93 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLD--LWKLYL 93 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHh--HHHHHH
Confidence 34677788888876655 899999999988653 556799999999999999999999999887544433 344444
Q ss_pred HHhhcc-CchHH----HHHHHHHHh-hhCCCCch-hHHHHHHHH---------HHhcCChHHHHHHHhhCCCC-------
Q 046194 365 SSCASL-GWIML----GQQIHGEGL-KLGLDSDV-SVSNALLSL---------YADAGYLSRCLKVFFLMPEH------- 421 (934)
Q Consensus 365 ~a~~~~-~~~~~----a~~i~~~~~-~~g~~~~~-~~~~~li~~---------y~~~g~~~~A~~~f~~~~~~------- 421 (934)
+-..+. +.... -.+.++..+ +.|+.+-. ..|+..+.. |....+++...++++++...
T Consensus 94 ~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEk 173 (656)
T KOG1914|consen 94 SYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEK 173 (656)
T ss_pred HHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHH
Confidence 433221 22222 223334333 45654432 355555543 34445677788888887642
Q ss_pred ---CccchHHHHHHH------H-hCCccHHHHHHHHHHHHH--cCCCCCccc---------------HHHHHHHHhccCC
Q 046194 422 ---DQVSWNSVIGAF------A-DSEALVSEAVKYYLDMRR--AGWSPNGVT---------------FINILAAASSFSM 474 (934)
Q Consensus 422 ---~~~~~~~li~~~------~-~~g~~~~~A~~l~~~m~~--~g~~p~~~t---------------~~~ll~a~~~~~~ 474 (934)
|-..|..=|+.. . +...+ ..|.++++++.. .|..-...+ |..+|..=-..+-
T Consensus 174 LW~DY~~fE~~IN~~tarK~i~e~s~~Y-m~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL 252 (656)
T KOG1914|consen 174 LWKDYEAFEQEINIITARKFIGERSPEY-MNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPL 252 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCHHH-HHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCc
Confidence 222222222111 1 12233 677777777654 344333333 2222222111110
Q ss_pred c-h----HHHH---HHHH-HHHhcCCCchhHHH-----HHHHHHHhcCCHH-------HHHHHHHhhccC---CCcchHH
Q 046194 475 G-K----LGHQ---VHAQ-VIKYNVANETTIEN-----ALLSCYGKCGEMD-------DCEKIFARMSER---RDEVSWN 530 (934)
Q Consensus 475 ~-~----~a~~---i~~~-~~~~g~~~~~~~~~-----~li~~~~~~g~~~-------~A~~~~~~~~~~---p~~~~~~ 530 (934)
- . ...+ ++++ +.-.+..|++.... ..-+.+...|+.+ ++.+++++.... -+...|.
T Consensus 253 ~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~ 332 (656)
T KOG1914|consen 253 RTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYF 332 (656)
T ss_pred ccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0 1111 1222 22234444432211 1122344444433 333344333221 0222222
Q ss_pred HHHHHH---HhcCChhHHHHHHHHHHHc-CCCCCHhHHHHHHHHHhchhhHHHHHHHHHHHHHhCCCC-cHhHHHHHHHH
Q 046194 531 SMISGY---IHNELLPKAMNLVWFMMQR-GQRLDHFTFATVLSACASVATLERGMEVHACGVRACLEF-DVVIGSALVDM 605 (934)
Q Consensus 531 ~li~~~---~~~g~~~~A~~l~~~m~~~-g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~-~~~~~~~li~~ 605 (934)
.+..-- ......+.....++++... .++|+ .+|...++...+..-+..|+.+|..+.+.+..+ +++++++++..
T Consensus 333 ~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy 411 (656)
T KOG1914|consen 333 ALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEY 411 (656)
T ss_pred HHHhhHHHhcccchhhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHH
Confidence 222110 0111244455555555443 23333 456677777777777888888888888877666 78888888887
Q ss_pred HHhcCCHHHHHHHhccCCC--CCccc-ccHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh--hhHHHHHHHHHhhCcHHH
Q 046194 606 YSKCGRIDYASRFFDLMPV--RNVYS-WNSMISGYARHGHGDKALTLFSQMKLDGPLPDH--VTFVGVLSACSHAGLVDE 680 (934)
Q Consensus 606 y~~~g~~~~A~~~~~~~~~--~~~~~-~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~ 680 (934)
|+ .++.+-|.++|+.-.+ +|... -...+.-+...++-..|..+|++....++.||. ..|..+|.-=+.-|+...
T Consensus 412 ~c-skD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~s 490 (656)
T KOG1914|consen 412 YC-SKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNS 490 (656)
T ss_pred Hh-cCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHH
Confidence 76 4667778888875432 34332 334555666677777778888887777666663 457777777777777777
Q ss_pred HHHHHHHhHHhhC--CCCCcccHHHHHHHHhhcCChHHHHHHHHhC
Q 046194 681 GFKHFKSMSQVYG--LIPQLEQFSCMVDLLGRAGELDKIEEFINKM 724 (934)
Q Consensus 681 a~~~~~~m~~~~~--~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m 724 (934)
+.++-+++...+. ..|...+-..+++.|.=.+....-..-++.+
T Consensus 491 i~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 491 ILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELKFL 536 (656)
T ss_pred HHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHHhh
Confidence 7777777666544 4444455555666666555544443333333
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.5e-05 Score=73.80 Aligned_cols=122 Identities=11% Similarity=-0.010 Sum_probs=94.0
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhhcCChHHHHHHHHhC-
Q 046194 647 LTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGRAGELDKIEEFINKM- 724 (934)
Q Consensus 647 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m- 724 (934)
..+|++..+ +.|+. +.....++...|++++|...|+.... +.|+ ...|..+..++.+.|++++|...+++.
T Consensus 13 ~~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al 85 (144)
T PRK15359 13 EDILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVM---AQPWSWRAHIALAGTWMMLKEYTTAINFYGHAL 85 (144)
T ss_pred HHHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 355666666 45664 44566677888899999988888865 4444 777888888888899999999888887
Q ss_pred CCCC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 046194 725 PITP-NSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYA 777 (934)
Q Consensus 725 ~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~ 777 (934)
...| ++..|..+..++... |+.++|...+++++++.|+++..+...+++..
T Consensus 86 ~l~p~~~~a~~~lg~~l~~~--g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 86 MLDASHPEPVYQTGVCLKMM--GEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred hcCCCCcHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 4555 566777777777777 99999999999999999999888888777644
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.00073 Score=74.09 Aligned_cols=265 Identities=15% Similarity=0.085 Sum_probs=168.3
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCCHhHHHHH-HHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHH---
Q 046194 526 EVSWNSMISGYIHNELLPKAMNLVWFMMQRG-QRLDHFTFATV-LSACASVATLERGMEVHACGVRACLEFDVVIGS--- 600 (934)
Q Consensus 526 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~l-l~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~--- 600 (934)
...|..+...+...|+.+++.+.+.+..... ..++......+ ...+...|+.+.+.++++.+.+.. +.+...+.
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~ 84 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHL 84 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhH
Confidence 4456666777777888888877777665432 12233222221 223456789999999999988763 22443433
Q ss_pred HHHHHHHhcCCHHHHHHHhccCCCCCc---ccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhC
Q 046194 601 ALVDMYSKCGRIDYASRFFDLMPVRNV---YSWNSMISGYARHGHGDKALTLFSQMKLDGPLPD-HVTFVGVLSACSHAG 676 (934)
Q Consensus 601 ~li~~y~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g 676 (934)
.+.......|..+.+.+.++.....+. ..+..+...+...|++++|+..+++..+. .|+ ...+..+...+...|
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--~p~~~~~~~~la~i~~~~g 162 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALEL--NPDDAWAVHAVAHVLEMQG 162 (355)
T ss_pred HHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCcHHHHHHHHHHHHcC
Confidence 222222335666777777765332222 23334556788999999999999999995 565 455677777899999
Q ss_pred cHHHHHHHHHHhHHhhCCCCCc--ccHHHHHHHHhhcCChHHHHHHHHhC-CCCC--CHHHH--H--HHHHHHHhccCCC
Q 046194 677 LVDEGFKHFKSMSQVYGLIPQL--EQFSCMVDLLGRAGELDKIEEFINKM-PITP--NSLIW--R--TVLGACCRANCRK 747 (934)
Q Consensus 677 ~~~~a~~~~~~m~~~~~~~p~~--~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p--~~~~~--~--~ll~~~~~~~~~~ 747 (934)
++++|..+++.........|+. ..|..+...+...|++++|.+.+++. ...| ..... + .++.-.... |.
T Consensus 163 ~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--g~ 240 (355)
T cd05804 163 RFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELA--GH 240 (355)
T ss_pred CHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhc--CC
Confidence 9999999999987632222332 24557889999999999999999986 2233 22211 1 334444444 65
Q ss_pred cHHHHHH---HHHHHhcCCCC--CchHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 046194 748 TELGRKA---ANMLFEMEPQN--AVNYVLLANMYASGGKWEDVAKARKAMKEA 795 (934)
Q Consensus 748 ~~~a~~~---~~~~~~~~p~~--~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~ 795 (934)
.+.+.+. ........|.. ...-...+.++...|++++|.+.++.++..
T Consensus 241 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~ 293 (355)
T cd05804 241 VDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGR 293 (355)
T ss_pred CChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 5555444 22222211221 122336788899999999999999888754
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=4.6e-05 Score=74.61 Aligned_cols=117 Identities=9% Similarity=0.099 Sum_probs=84.6
Q ss_pred hCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHH-HhccCCC--cH
Q 046194 675 AGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGAC-CRANCRK--TE 749 (934)
Q Consensus 675 ~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~-~~~~~~~--~~ 749 (934)
.++.+++...++...+. -+.+...|..+...|...|++++|.+.+++. ...| +..++..+..+. ... |+ .+
T Consensus 52 ~~~~~~~i~~l~~~L~~--~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~--g~~~~~ 127 (198)
T PRK10370 52 QQTPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQA--GQHMTP 127 (198)
T ss_pred chhHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc--CCCCcH
Confidence 45556666666655542 2333677777777777888888888777776 4555 455666666653 455 55 58
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 046194 750 LGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMKEA 795 (934)
Q Consensus 750 ~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~ 795 (934)
+|...++++++.+|+++..+..++..+...|++++|...++++.+.
T Consensus 128 ~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 128 QTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 8888888888888888888888888888888888888888888653
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.0043 Score=77.53 Aligned_cols=193 Identities=9% Similarity=0.004 Sum_probs=96.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhccC------CC----cchHHHHHHHHHhcCChhHHHHHHHHHHHc--CCCCC--HhH
Q 046194 498 NALLSCYGKCGEMDDCEKIFARMSER------RD----EVSWNSMISGYIHNELLPKAMNLVWFMMQR--GQRLD--HFT 563 (934)
Q Consensus 498 ~~li~~~~~~g~~~~A~~~~~~~~~~------p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~--~~t 563 (934)
..+...+...|+++.|...+++.... ++ ...+..+...+...|++++|...+.+.... ...+. ...
T Consensus 535 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 614 (903)
T PRK04841 535 LQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQC 614 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHH
Confidence 34444555666666666665543321 01 112233334455567777776666665432 11111 122
Q ss_pred HHHHHHHHhchhhHHHHHHHHHHHHHh----CCCCcH--hHHHHHHHHHHhcCCHHHHHHHhccCCCCCcc-c------c
Q 046194 564 FATVLSACASVATLERGMEVHACGVRA----CLEFDV--VIGSALVDMYSKCGRIDYASRFFDLMPVRNVY-S------W 630 (934)
Q Consensus 564 ~~~ll~a~~~~~~~~~a~~i~~~~~~~----~~~~~~--~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~-~------~ 630 (934)
+..+.......|+.+.|.+.+..+... +..... ......+..+...|+.+.|...+.....+... . +
T Consensus 615 ~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~ 694 (903)
T PRK04841 615 LAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQW 694 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHH
Confidence 223333445566666666666555332 100000 00011123345577777777777655432211 1 2
Q ss_pred cHHHHHHHHcCChHHHHHHHHHHHHC----CCCCC-hhhHHHHHHHHHhhCcHHHHHHHHHHhHH
Q 046194 631 NSMISGYARHGHGDKALTLFSQMKLD----GPLPD-HVTFVGVLSACSHAGLVDEGFKHFKSMSQ 690 (934)
Q Consensus 631 ~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 690 (934)
..+..++...|++++|..++++.... |..++ ..+...+..++...|+.++|...+.+..+
T Consensus 695 ~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 695 RNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALK 759 (903)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34555666777777777777776542 22222 12344444556677777777777776665
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=2.2e-05 Score=71.05 Aligned_cols=119 Identities=13% Similarity=0.055 Sum_probs=98.4
Q ss_pred cccHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 046194 698 LEQFSCMVDLLGRAGELDKIEEFINKM-PITPN-SLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANM 775 (934)
Q Consensus 698 ~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~ 775 (934)
.+..-.+...+...|++++|.++|+-. .+.|. ..-|-.|...|... |+++.|..++.++..++|+||.+|..++.+
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~--g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c 112 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQ--KHWGEAIYAYGRAAQIKIDAPQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH--hhHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 455556677788999999999999987 56664 55678888888888 999999999999999999999999999999
Q ss_pred HHcCCChHHHHHHHHHHHhCCCcCCCceeEEEeCCEEEEEEcCCCCCCChHHHHHHHHHHHHHHHH
Q 046194 776 YASGGKWEDVAKARKAMKEAEVKKEAGCSWVTMKDGVHVFVAGDESHPEKDLIYEKLKELNQKMRD 841 (934)
Q Consensus 776 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~~ 841 (934)
|...|+.+.|.+-|+...... ..+|+...+.++.+.....|.+
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~~~-----------------------~~~~~~~~l~~~A~~~L~~l~~ 155 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVRIC-----------------------GEVSEHQILRQRAEKMLQQLSD 155 (157)
T ss_pred HHHcCCHHHHHHHHHHHHHHh-----------------------ccChhHHHHHHHHHHHHHHhhc
Confidence 999999999999998776421 1467788888777777766643
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.0043 Score=77.50 Aligned_cols=155 Identities=8% Similarity=-0.083 Sum_probs=70.8
Q ss_pred HHHHHHhcCChHHHHHHHhhCCCCCccc--hHHHHHHHHhCCccHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhccCCc
Q 046194 398 LLSLYADAGYLSRCLKVFFLMPEHDQVS--WNSVIGAFADSEALVSEAVKYYLDMRRAGWSPNGVTFINILAAASSFSMG 475 (934)
Q Consensus 398 li~~y~~~g~~~~A~~~f~~~~~~~~~~--~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 475 (934)
....|...|++.+|..........+... ...........|+. ..+..++..+.......+..........+...+++
T Consensus 347 aa~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~-~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~ 425 (903)
T PRK04841 347 AAEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGEL-SLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRY 425 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCCh-HHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCH
Confidence 3445666677777766665555432211 11111233445565 66666655542111111122222233334455666
Q ss_pred hHHHHHHHHHHHhcCC------Cc--hhHHHHHHHHHHhcCCHHHHHHHHHhhccC-C--Cc----chHHHHHHHHHhcC
Q 046194 476 KLGHQVHAQVIKYNVA------NE--TTIENALLSCYGKCGEMDDCEKIFARMSER-R--DE----VSWNSMISGYIHNE 540 (934)
Q Consensus 476 ~~a~~i~~~~~~~g~~------~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-p--~~----~~~~~li~~~~~~g 540 (934)
+.+..........--. +. ......+...+...|++++|...+++.... | +. ..++.+...+...|
T Consensus 426 ~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G 505 (903)
T PRK04841 426 SEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKG 505 (903)
T ss_pred HHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcC
Confidence 7766666655432110 01 111122233445566666666666654331 1 11 12333444455566
Q ss_pred ChhHHHHHHHHHH
Q 046194 541 LLPKAMNLVWFMM 553 (934)
Q Consensus 541 ~~~~A~~l~~~m~ 553 (934)
++++|...+.+..
T Consensus 506 ~~~~A~~~~~~al 518 (903)
T PRK04841 506 ELARALAMMQQTE 518 (903)
T ss_pred CHHHHHHHHHHHH
Confidence 6666666666554
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00034 Score=73.67 Aligned_cols=171 Identities=11% Similarity=0.092 Sum_probs=112.5
Q ss_pred HHhcC-CHHHHHHHhccCCC---CCcccccHHHHHHHHcCCh--HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHH
Q 046194 606 YSKCG-RIDYASRFFDLMPV---RNVYSWNSMISGYARHGHG--DKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVD 679 (934)
Q Consensus 606 y~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~--~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 679 (934)
+.+.| ++++++..++.+.. ++..+|+.....+.+.|+. ++++.+++++.+.. +-|...|..-.-++.+.|+++
T Consensus 81 L~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~ 159 (320)
T PLN02789 81 LEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWE 159 (320)
T ss_pred HHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHH
Confidence 33444 45666666665542 3344565544444445542 56788888887743 223566777777777888888
Q ss_pred HHHHHHHHhHHhhCCCCCcccHHHHHHHHhhc---CCh----HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccC--CCc
Q 046194 680 EGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRA---GEL----DKIEEFINKM-PITP-NSLIWRTVLGACCRANC--RKT 748 (934)
Q Consensus 680 ~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~---g~~----~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~--~~~ 748 (934)
++++.++++.+. -.-+...|+....++.+. |.+ +++.++..++ ...| |...|+.+.+.+...+. ++.
T Consensus 160 eeL~~~~~~I~~--d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~ 237 (320)
T PLN02789 160 DELEYCHQLLEE--DVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSD 237 (320)
T ss_pred HHHHHHHHHHHH--CCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccc
Confidence 888888888773 223355666665555444 222 4667777554 5555 57789999998887411 344
Q ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHHcC
Q 046194 749 ELGRKAANMLFEMEPQNAVNYVLLANMYASG 779 (934)
Q Consensus 749 ~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~ 779 (934)
..+......+.+.+|.++.....|+++|...
T Consensus 238 ~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 238 PEVSSVCLEVLSKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred hhHHHHHHHhhcccCCcHHHHHHHHHHHHhh
Confidence 6688888888899999999999999999874
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.11 E-value=8.6e-05 Score=81.81 Aligned_cols=196 Identities=15% Similarity=0.136 Sum_probs=136.0
Q ss_pred CCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCCCCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 046194 591 CLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPVRNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLS 670 (934)
Q Consensus 591 ~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 670 (934)
+++|--..-..+.+.+.++|-...|..+|++.. .|.-.|.+|...|+..+|..+..+-.+ -+||...|..+..
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erle-----mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERLE-----MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGD 465 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhHH-----HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhh
Confidence 455555666678888888899999998888754 677788888888888888888888777 3678888888877
Q ss_pred HHHhhCcHHHHHHHHHHhHHh--h-----------------------CCCCC-cccHHHHHHHHhhcCChHHHHHHHHhC
Q 046194 671 ACSHAGLVDEGFKHFKSMSQV--Y-----------------------GLIPQ-LEQFSCMVDLLGRAGELDKIEEFINKM 724 (934)
Q Consensus 671 a~~~~g~~~~a~~~~~~m~~~--~-----------------------~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m 724 (934)
.......+++|+++++..... + .+.|- ..+|-....+..+.++++.|.+.|...
T Consensus 466 v~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rc 545 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRC 545 (777)
T ss_pred hccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHH
Confidence 777666677777776654432 0 11121 334444555555666777777666655
Q ss_pred -CCCCC-HHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 046194 725 -PITPN-SLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMKEA 795 (934)
Q Consensus 725 -~~~p~-~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~ 795 (934)
...|| ...|++|-.++.+. ++..+|....+.+++-+-++...+.+..-+..+.|.|++|.+....+.+.
T Consensus 546 vtL~Pd~~eaWnNls~ayi~~--~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 546 VTLEPDNAEAWNNLSTAYIRL--KKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred hhcCCCchhhhhhhhHHHHHH--hhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 55665 44677777777777 77777777777777777666666666666777777777777777666544
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00017 Score=70.61 Aligned_cols=156 Identities=10% Similarity=0.083 Sum_probs=118.2
Q ss_pred HHHHHhcCCHHHHHHHhccCCCCCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHHH
Q 046194 603 VDMYSKCGRIDYASRFFDLMPVRNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGF 682 (934)
Q Consensus 603 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 682 (934)
+-+|.+.|+++......+.+..+. . .|...++.++++..+++..+.. +.|...|..+...|...|++++|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~-~-------~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL-H-------QFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc-c-------cccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 456888888877655554332221 0 1122567788888888888753 344677888888999999999999
Q ss_pred HHHHHhHHhhCCCCC-cccHHHHHHHH-hhcCC--hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCcHHHHHHHH
Q 046194 683 KHFKSMSQVYGLIPQ-LEQFSCMVDLL-GRAGE--LDKIEEFINKM-PITP-NSLIWRTVLGACCRANCRKTELGRKAAN 756 (934)
Q Consensus 683 ~~~~~m~~~~~~~p~-~~~y~~li~~l-~~~g~--~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~ 756 (934)
..|++..+ +.|+ ...+..+..++ .+.|+ .++|.+++++. ...| +..++..|...+... |++++|...++
T Consensus 94 ~a~~~Al~---l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~--g~~~~Ai~~~~ 168 (198)
T PRK10370 94 LAYRQALQ---LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQ--ADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHc--CCHHHHHHHHH
Confidence 99998876 5565 77888888864 67787 59999999998 5666 456777777788888 99999999999
Q ss_pred HHHhcCCCCCchHHHH
Q 046194 757 MLFEMEPQNAVNYVLL 772 (934)
Q Consensus 757 ~~~~~~p~~~~~y~~l 772 (934)
+++++.|++..-+..+
T Consensus 169 ~aL~l~~~~~~r~~~i 184 (198)
T PRK10370 169 KVLDLNSPRVNRTQLV 184 (198)
T ss_pred HHHhhCCCCccHHHHH
Confidence 9999999987765544
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00014 Score=70.77 Aligned_cols=132 Identities=14% Similarity=0.104 Sum_probs=93.4
Q ss_pred CCChhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhC--CCCCCHHHHHHH
Q 046194 659 LPDHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKM--PITPNSLIWRTV 736 (934)
Q Consensus 659 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m--~~~p~~~~~~~l 736 (934)
.|+......+-.++...|+-+.+..+...... ....+.......+....+.|++.+|...+.+. +-+||...|+.+
T Consensus 63 ~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~l 140 (257)
T COG5010 63 NPEDLSIAKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLL 140 (257)
T ss_pred CcchHHHHHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHH
Confidence 45433334455566677777777776655543 12223444555777788888888888888877 445567778777
Q ss_pred HHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHHh
Q 046194 737 LGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 737 l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 794 (934)
..+|-+. |+.+.|...+.+++++.|.++.++..|+-.|.-.|+.++|..++.....
T Consensus 141 gaaldq~--Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l 196 (257)
T COG5010 141 GAALDQL--GRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYL 196 (257)
T ss_pred HHHHHHc--cChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHh
Confidence 7777777 8888888888888888888888888888888888888888877766654
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00011 Score=85.32 Aligned_cols=187 Identities=10% Similarity=0.067 Sum_probs=136.5
Q ss_pred hHHHHHHH-HHhchhhHHHH-HHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCC------CCCcccccHH
Q 046194 562 FTFATVLS-ACASVATLERG-MEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMP------VRNVYSWNSM 633 (934)
Q Consensus 562 ~t~~~ll~-a~~~~~~~~~a-~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~------~~~~~~~~~l 633 (934)
.|...++. +.+..|..+++ .+++.++.+ ++ .+.|.+..+..-+-+.. ..++..+-.|
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 92 (694)
T PRK15179 28 PTILDLLEAALAEPGESEEAGRELLQQARQ------------VL---ERHAAVHKPAAALPELLDYVRRYPHTELFQVLV 92 (694)
T ss_pred cHHHhHHHHHhcCcccchhHHHHHHHHHHH------------HH---HHhhhhcchHhhHHHHHHHHHhccccHHHHHHH
Confidence 34444444 55666655544 666666544 22 33333333333222221 1346677888
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhhc
Q 046194 634 ISGYARHGHGDKALTLFSQMKLDGPLPDH-VTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGRA 711 (934)
Q Consensus 634 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~ 711 (934)
.....+.|+.++|+.+++...+ +.||. ..+..+...+.+.+.+++|+..+++... ..|+ ..+...+..++.+.
T Consensus 93 a~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~---~~p~~~~~~~~~a~~l~~~ 167 (694)
T PRK15179 93 ARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS---GGSSSAREILLEAKSWDEI 167 (694)
T ss_pred HHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh---cCCCCHHHHHHHHHHHHHh
Confidence 8888899999999999999998 68884 4577777889999999999999998876 4566 77788888999999
Q ss_pred CChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHH
Q 046194 712 GELDKIEEFINKM-PITPN-SLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYV 770 (934)
Q Consensus 712 g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~ 770 (934)
|++++|.++|++. ...|+ ..+|.++..++... |+.+.|..+++++++...+-...|.
T Consensus 168 g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~--G~~~~A~~~~~~a~~~~~~~~~~~~ 226 (694)
T PRK15179 168 GQSEQADACFERLSRQHPEFENGYVGWAQSLTRR--GALWRARDVLQAGLDAIGDGARKLT 226 (694)
T ss_pred cchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhhCcchHHHH
Confidence 9999999999988 23444 77889999999999 9999999999999998876655543
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00057 Score=75.59 Aligned_cols=218 Identities=11% Similarity=0.106 Sum_probs=173.1
Q ss_pred hcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHH
Q 046194 488 YNVANETTIENALLSCYGKCGEMDDCEKIFARMSERRDEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATV 567 (934)
Q Consensus 488 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 567 (934)
.+++|-......+.+.+.++|-...|..+|+++ ..|...|.+|+..|+..+|..+.++..+ -+||..-|..+
T Consensus 392 ~~lpp~Wq~q~~laell~slGitksAl~I~Erl------emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~L 463 (777)
T KOG1128|consen 392 PHLPPIWQLQRLLAELLLSLGITKSALVIFERL------EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLL 463 (777)
T ss_pred CCCCCcchHHHHHHHHHHHcchHHHHHHHHHhH------HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHh
Confidence 355677777788999999999999999999965 4688889999999999999999888877 57899999999
Q ss_pred HHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCCC---CcccccHHHHHHHHcCChH
Q 046194 568 LSACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPVR---NVYSWNSMISGYARHGHGD 644 (934)
Q Consensus 568 l~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~ 644 (934)
.+...+..-+++|.++.++.... .-..+.......++++++.+.|+.-..- -..+|-..-.+..+.++++
T Consensus 464 GDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q 536 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQ 536 (777)
T ss_pred hhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhH
Confidence 99998888899999988875432 1111112223468889999888865432 3448888888888999999
Q ss_pred HHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHh
Q 046194 645 KALTLFSQMKLDGPLPD-HVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINK 723 (934)
Q Consensus 645 ~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~ 723 (934)
.|.+.|..-.. ..|| ...|+++-.++.+.|+-.+|...+.+..+ ++ .-+...|...+-.....|.+++|.+.+.+
T Consensus 537 ~av~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlK-cn-~~~w~iWENymlvsvdvge~eda~~A~~r 612 (777)
T KOG1128|consen 537 AAVKAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALK-CN-YQHWQIWENYMLVSVDVGEFEDAIKAYHR 612 (777)
T ss_pred HHHHHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhh-cC-CCCCeeeechhhhhhhcccHHHHHHHHHH
Confidence 99999998887 5788 45699999999999999999999999887 34 34455566666777889999999998887
Q ss_pred C
Q 046194 724 M 724 (934)
Q Consensus 724 m 724 (934)
+
T Consensus 613 l 613 (777)
T KOG1128|consen 613 L 613 (777)
T ss_pred H
Confidence 6
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00015 Score=78.01 Aligned_cols=238 Identities=11% Similarity=0.103 Sum_probs=121.0
Q ss_pred HHhcCCHHHHHHHHHhhccC-C-CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HhHHHHHHHHHhchhhHHHH
Q 046194 504 YGKCGEMDDCEKIFARMSER-R-DEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLD-HFTFATVLSACASVATLERG 580 (934)
Q Consensus 504 ~~~~g~~~~A~~~~~~~~~~-p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a 580 (934)
+.+.|++.+|.-.|+....+ | +...|--|-.....+++-..|+.-+++-.+ +.|+ ...+..|.-.|.+.|.-..|
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~--LdP~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLE--LDPTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHh--cCCccHHHHHHHHHHHhhhhhHHHH
Confidence 34556666666666655443 3 455566666666666666666666665554 3443 34444444555566655556
Q ss_pred HHHHHHHHHhCCCC--------cHhHHHHHHHHHHhcCCHHHHHHHhccCC-----CCCcccccHHHHHHHHcCChHHHH
Q 046194 581 MEVHACGVRACLEF--------DVVIGSALVDMYSKCGRIDYASRFFDLMP-----VRNVYSWNSMISGYARHGHGDKAL 647 (934)
Q Consensus 581 ~~i~~~~~~~~~~~--------~~~~~~~li~~y~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~ 647 (934)
...++.-++..++- +...-+. ........+....++|-++. ..|......|--.|-..|.+++|+
T Consensus 373 l~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 373 LKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 55555443322110 0000000 00000011122222232221 234445555555556666666666
Q ss_pred HHHHHHHHCCCCCC-hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhhcCChHHHHHHHHhC-
Q 046194 648 TLFSQMKLDGPLPD-HVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGRAGELDKIEEFINKM- 724 (934)
Q Consensus 648 ~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m- 724 (934)
..|+..+. ++|+ ..+|+-|...++...+.++|+..|++..+ +.|+ +.....|.-.|...|.++||.+.|-+.
T Consensus 451 Dcf~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq---LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 451 DCFEAALQ--VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ---LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh---cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 66666665 3454 44566666666666666666666666654 5566 445555555666666666665544332
Q ss_pred -----------CCCCCHHHHHHHHHHHHhccCCCcHHHH
Q 046194 725 -----------PITPNSLIWRTVLGACCRANCRKTELGR 752 (934)
Q Consensus 725 -----------~~~p~~~~~~~ll~~~~~~~~~~~~~a~ 752 (934)
.-.++..+|.+|=.++... ++.+...
T Consensus 526 ~mq~ks~~~~~~~~~se~iw~tLR~als~~--~~~D~l~ 562 (579)
T KOG1125|consen 526 SMQRKSRNHNKAPMASENIWQTLRLALSAM--NRSDLLQ 562 (579)
T ss_pred HhhhcccccccCCcchHHHHHHHHHHHHHc--CCchHHH
Confidence 0112456777777776666 5555333
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.0017 Score=63.94 Aligned_cols=283 Identities=11% Similarity=0.020 Sum_probs=166.1
Q ss_pred HHHHHHhhccCChhHHHHHHhcCCCC---CcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHH-HHHhhcc
Q 046194 295 NGLVNMYAKCGTIDDSRSVFRFMIGK---DSVSWNTMISGLDQNGCYEEAIMNFCAMRRDGLMSSNFSLIST-LSSCASL 370 (934)
Q Consensus 295 ~~li~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-l~a~~~~ 370 (934)
++.+.-+.+..++++|++++..-.++ +....+.+..+|....++..|-+.|+++-. ..|...-|... ..++-+.
T Consensus 14 taviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~q--l~P~~~qYrlY~AQSLY~A 91 (459)
T KOG4340|consen 14 TAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQ--LHPELEQYRLYQAQSLYKA 91 (459)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hChHHHHHHHHHHHHHHHh
Confidence 45555567788899999988766554 455677788888899999999999998866 34544433321 1233344
Q ss_pred CchHHHHHHHHHHhhhCCCCchhHHHHHH--HHHHhcCChHHHHHHHhhCCC-CCccchHHHHHHHHhCCccHHHHHHHH
Q 046194 371 GWIMLGQQIHGEGLKLGLDSDVSVSNALL--SLYADAGYLSRCLKVFFLMPE-HDQVSWNSVIGAFADSEALVSEAVKYY 447 (934)
Q Consensus 371 ~~~~~a~~i~~~~~~~g~~~~~~~~~~li--~~y~~~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~~g~~~~~A~~l~ 447 (934)
+.+..|..+...|... ++...-..-+ ...-..+++..+..+.++.+. .+..+-+...-...+.|++ ++|++-|
T Consensus 92 ~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqy-EaAvqkF 167 (459)
T KOG4340|consen 92 CIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQY-EAAVQKF 167 (459)
T ss_pred cccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccH-HHHHHHH
Confidence 5566666666665442 1111111111 122346778888888888884 4555555555556688888 9999999
Q ss_pred HHHHHcCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhcCCCch---------------------hHHHHHHH----
Q 046194 448 LDMRRAGWSPNGVTFINILAAASSFSMGKLGHQVHAQVIKYNVANET---------------------TIENALLS---- 502 (934)
Q Consensus 448 ~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~---------------------~~~~~li~---- 502 (934)
+...+-+.-.....|+..+.. -+.++...|.....++++.|+...+ ..-++++.
T Consensus 168 qaAlqvsGyqpllAYniALaH-y~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNL 246 (459)
T KOG4340|consen 168 QAALQVSGYQPLLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNL 246 (459)
T ss_pred HHHHhhcCCCchhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhh
Confidence 888775433344566655543 4567888888888888887764221 11123333
Q ss_pred ---HHHhcCCHHHHHHHHHhhccC----CCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhchh
Q 046194 503 ---CYGKCGEMDDCEKIFARMSER----RDEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVA 575 (934)
Q Consensus 503 ---~~~~~g~~~~A~~~~~~~~~~----p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~ 575 (934)
.+.+.|+.+.|.+.+-.|+.+ .|++|...+.-.- -.+++.+..+-+.-+..... -...||..++-.||+..
T Consensus 247 KaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNe 324 (459)
T KOG4340|consen 247 KAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNE 324 (459)
T ss_pred hhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhH
Confidence 245567777777777777664 2555543332211 13334444443333433322 23356666666666666
Q ss_pred hHHHHHHHHHH
Q 046194 576 TLERGMEVHAC 586 (934)
Q Consensus 576 ~~~~a~~i~~~ 586 (934)
-++.|-.++.+
T Consensus 325 yf~lAADvLAE 335 (459)
T KOG4340|consen 325 YFDLAADVLAE 335 (459)
T ss_pred HHhHHHHHHhh
Confidence 66665555443
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00075 Score=66.28 Aligned_cols=177 Identities=13% Similarity=0.166 Sum_probs=113.4
Q ss_pred hcCCHHHHHHHhccCCC-CCcccccHHHHHHHHcCChHHHHHHHHHHHHC-CCCCChhhHHHHHHHHHhhCcHHHHHHHH
Q 046194 608 KCGRIDYASRFFDLMPV-RNVYSWNSMISGYARHGHGDKALTLFSQMKLD-GPLPDHVTFVGVLSACSHAGLVDEGFKHF 685 (934)
Q Consensus 608 ~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 685 (934)
..+++..+..+.++.+. .+..+.+.......+.|+++.|++-|+...+- |..| ...|+..+ +..+.|+++.|+++.
T Consensus 124 se~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqp-llAYniAL-aHy~~~qyasALk~i 201 (459)
T KOG4340|consen 124 SEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQP-LLAYNLAL-AHYSSRQYASALKHI 201 (459)
T ss_pred ccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCc-hhHHHHHH-HHHhhhhHHHHHHHH
Confidence 34566666666666662 34444444444445667777777777776653 4433 34455444 333456677777776
Q ss_pred HHhHHhhCCC-------------CC--------cccHHHHHH-------HHhhcCChHHHHHHHHhCC----CCCCHHHH
Q 046194 686 KSMSQVYGLI-------------PQ--------LEQFSCMVD-------LLGRAGELDKIEEFINKMP----ITPNSLIW 733 (934)
Q Consensus 686 ~~m~~~~~~~-------------p~--------~~~y~~li~-------~l~~~g~~~~A~~~~~~m~----~~p~~~~~ 733 (934)
.++.+. |++ || .-+-+.++. .+.+.|+++.|.+.+-.|| .+.|++|.
T Consensus 202 SEIieR-G~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTL 280 (459)
T KOG4340|consen 202 SEIIER-GIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTL 280 (459)
T ss_pred HHHHHh-hhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhh
Confidence 666653 332 11 112333443 3467899999999999994 34578887
Q ss_pred HHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHH
Q 046194 734 RTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARK 790 (934)
Q Consensus 734 ~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~ 790 (934)
..+.-. ... ++...+.+-.+-+++++|--+.++..+.-+|++..-++-|..++-
T Consensus 281 HN~Al~--n~~-~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvLA 334 (459)
T KOG4340|consen 281 HNQALM--NMD-ARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVLA 334 (459)
T ss_pred hHHHHh--ccc-CCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHHh
Confidence 665432 222 667777777788889999778899999999999999999988743
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=5.9e-05 Score=69.75 Aligned_cols=97 Identities=6% Similarity=-0.070 Sum_probs=86.5
Q ss_pred CCCCcccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHH
Q 046194 694 LIPQLEQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVL 771 (934)
Q Consensus 694 ~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~ 771 (934)
+.|+ .+..+...+...|++++|.+.|+.. ...| +...|..+..++... |+++.|...++++++++|+++..+..
T Consensus 22 ~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~--g~~~~A~~~y~~Al~l~p~~~~a~~~ 97 (144)
T PRK15359 22 VDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMML--KEYTTAINFYGHALMLDASHPEPVYQ 97 (144)
T ss_pred cCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH--hhHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 4454 4667888999999999999999987 5556 577889999999999 99999999999999999999999999
Q ss_pred HHHHHHcCCChHHHHHHHHHHHh
Q 046194 772 LANMYASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 772 l~~~~~~~g~~~~a~~~~~~m~~ 794 (934)
++.+|...|+.++|.+.++...+
T Consensus 98 lg~~l~~~g~~~eAi~~~~~Al~ 120 (144)
T PRK15359 98 TGVCLKMMGEPGLAREAFQTAIK 120 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999988764
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00018 Score=84.50 Aligned_cols=196 Identities=13% Similarity=0.144 Sum_probs=161.7
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHhccCCC--------CCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhH
Q 046194 595 DVVIGSALVDMYSKCGRIDYASRFFDLMPV--------RNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPD-HVTF 665 (934)
Q Consensus 595 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~ 665 (934)
+...|-..|......++++.|++++++... .-...|.++++.-...|.-+...++|+++.+. -| -..|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy---cd~~~V~ 1533 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY---CDAYTVH 1533 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh---cchHHHH
Confidence 456666777777888899999998887752 12347888888888889888899999999883 34 3458
Q ss_pred HHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhC-CCCC---CHHHHHHHHHHHH
Q 046194 666 VGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKM-PITP---NSLIWRTVLGACC 741 (934)
Q Consensus 666 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p---~~~~~~~ll~~~~ 741 (934)
..|..-|.+.+..++|.++++.|.++++ -....|...++.+.+...-+.|..+++++ ..-| ......-....-.
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHh
Confidence 8888899999999999999999999876 56788999999999999999999999876 3333 3445555566666
Q ss_pred hccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHHhCCC
Q 046194 742 RANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMKEAEV 797 (934)
Q Consensus 742 ~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 797 (934)
++ ||.+.|+.+++-++.-.|.....|..+++.-.++|.-+.+..+++.....++
T Consensus 1612 k~--GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l 1665 (1710)
T KOG1070|consen 1612 KY--GDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKL 1665 (1710)
T ss_pred hc--CCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCC
Confidence 77 9999999999999999999999999999999999999999999999887655
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00055 Score=80.65 Aligned_cols=239 Identities=14% Similarity=0.177 Sum_probs=158.9
Q ss_pred HHHHHHhhccCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH-----hHHHHHHHHHhchhhHHHHHHHHHH
Q 046194 513 CEKIFARMSERR-DEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDH-----FTFATVLSACASVATLERGMEVHAC 586 (934)
Q Consensus 513 A~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-----~t~~~ll~a~~~~~~~~~a~~i~~~ 586 (934)
|.+.-..+...| ....|-..|.-..+.++.++|.+++++.+.. +.+.+ ..|.++++.-..-|.-+...++|++
T Consensus 1444 aeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeR 1522 (1710)
T KOG1070|consen 1444 AEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFER 1522 (1710)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHH
Confidence 333333344445 4556888888888888888888888887664 32221 3444555544445566677777777
Q ss_pred HHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCCC---CcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--
Q 046194 587 GVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPVR---NVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPD-- 661 (934)
Q Consensus 587 ~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-- 661 (934)
+.+.. ..-.+|..|...|.+.+..++|.++|+.|.++ ....|...+..+.++.+.+.|..++.+..+. -|.
T Consensus 1523 Acqyc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~e 1598 (1710)
T KOG1070|consen 1523 ACQYC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQE 1598 (1710)
T ss_pred HHHhc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhh
Confidence 77642 23456778888888888888888888888742 4558888888888888888888888888774 344
Q ss_pred hhhHHHH-HHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhC---CCCCC--HHHHHH
Q 046194 662 HVTFVGV-LSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKM---PITPN--SLIWRT 735 (934)
Q Consensus 662 ~~t~~~l-l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m---~~~p~--~~~~~~ 735 (934)
.+-+.+- +..-.+.|+.+.|..+|+..... .+.-...|+..+++-.++|..+.++.+|++. ++.|- -..|.-
T Consensus 1599 Hv~~IskfAqLEFk~GDaeRGRtlfEgll~a--yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKk 1676 (1710)
T KOG1070|consen 1599 HVEFISKFAQLEFKYGDAERGRTLFEGLLSA--YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKK 1676 (1710)
T ss_pred hHHHHHHHHHHHhhcCCchhhHHHHHHHHhh--CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHH
Confidence 2222221 22234678888888888888774 3333677888888888888888888888876 33332 234555
Q ss_pred HHHHHHhccCCCcHHHHHHHHHHHh
Q 046194 736 VLGACCRANCRKTELGRKAANMLFE 760 (934)
Q Consensus 736 ll~~~~~~~~~~~~~a~~~~~~~~~ 760 (934)
.|..=..+ ||-+..+.+-.++.+
T Consensus 1677 wLeyEk~~--Gde~~vE~VKarA~E 1699 (1710)
T KOG1070|consen 1677 WLEYEKSH--GDEKNVEYVKARAKE 1699 (1710)
T ss_pred HHHHHHhc--CchhhHHHHHHHHHH
Confidence 55555556 665555555544443
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.00 E-value=8.6e-06 Score=54.32 Aligned_cols=35 Identities=23% Similarity=0.551 Sum_probs=32.9
Q ss_pred ccHHHHHHHHHcCCCchHHHHHHHHHHHccCCCCCCCCc
Q 046194 156 ISWNSIISVYSQRGDTISVFKLFSRMQREGFRYSLKPNE 194 (934)
Q Consensus 156 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~p~~ 194 (934)
++||+||.+|++.|++++|.++|++|++.|+ +||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~----~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGI----EPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCC----CCCC
Confidence 4799999999999999999999999999999 8874
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.013 Score=62.95 Aligned_cols=166 Identities=14% Similarity=0.069 Sum_probs=104.9
Q ss_pred HHHHHhcCCHHHHHHHhccCCCCCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChh-hHHHHHHHHHhhCcHHHH
Q 046194 603 VDMYSKCGRIDYASRFFDLMPVRNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHV-TFVGVLSACSHAGLVDEG 681 (934)
Q Consensus 603 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a 681 (934)
...|.+.++.+.|...|.+...+-.. -....+....++++...+...- +.|+.. -...=...+.+.|++..|
T Consensus 305 g~a~~k~~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~A 377 (539)
T KOG0548|consen 305 GNAYTKREDYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPEA 377 (539)
T ss_pred hhhhhhHHhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHHH
Confidence 34566667777777776654321100 1111223334555555444433 345431 122224557788888888
Q ss_pred HHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhccCCCcHHHHHHHHHHH
Q 046194 682 FKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKM-PITPNS-LIWRTVLGACCRANCRKTELGRKAANMLF 759 (934)
Q Consensus 682 ~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p~~-~~~~~ll~~~~~~~~~~~~~a~~~~~~~~ 759 (934)
+..|.+++.. -+-|...|+.-.-+|.+.|.+.+|++-.+.. ...|+. ..|.--..++... .+++.|..++++.+
T Consensus 378 v~~YteAIkr--~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~m--k~ydkAleay~eal 453 (539)
T KOG0548|consen 378 VKHYTEAIKR--DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAM--KEYDKALEAYQEAL 453 (539)
T ss_pred HHHHHHHHhc--CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 8888888773 2334778888888888888888888776665 445543 3444445555556 88999999999999
Q ss_pred hcCCCCCchHHHHHHHHHcC
Q 046194 760 EMEPQNAVNYVLLANMYASG 779 (934)
Q Consensus 760 ~~~p~~~~~y~~l~~~~~~~ 779 (934)
+.+|++...-..+.+.+...
T Consensus 454 e~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 454 ELDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred hcCchhHHHHHHHHHHHHHh
Confidence 99999887777777766654
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.06 Score=61.61 Aligned_cols=215 Identities=12% Similarity=0.049 Sum_probs=126.0
Q ss_pred HcCCCchHHHHHHHHHHHccCCCCCCCCceeHHHHHHHHh--cCccccchHHHHHHHHHHHhCCCCCccchhHHHHHHHh
Q 046194 166 SQRGDTISVFKLFSRMQREGFRYSLKPNEYTFGSLITAAY--SSVLSGSYLLQQILAMVKKAGLLSDLYVGSALVSGFAR 243 (934)
Q Consensus 166 ~~~g~~~~A~~l~~~m~~~g~~~~~~p~~~t~~~ll~a~~--~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~ 243 (934)
...+++.+|+....++.+. .||. .|..+++|+. +.|..+. +..+++.....+.. |..|...+-..|..
T Consensus 20 ld~~qfkkal~~~~kllkk------~Pn~-~~a~vLkaLsl~r~gk~~e--a~~~Le~~~~~~~~-D~~tLq~l~~~y~d 89 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKK------HPNA-LYAKVLKALSLFRLGKGDE--ALKLLEALYGLKGT-DDLTLQFLQNVYRD 89 (932)
T ss_pred hhhHHHHHHHHHHHHHHHH------CCCc-HHHHHHHHHHHHHhcCchh--HHHHHhhhccCCCC-chHHHHHHHHHHHH
Confidence 3457788888888888776 4553 5667777775 5566665 77777777766666 88889999999999
Q ss_pred cCChHHHHHHHHHhhhcccchhhhhhhhhhhhhHHHHHHHHHcCCCchhHHHHHHHHhhccCCh----hHHHHHHhcCCC
Q 046194 244 LGNFYYARKIFEQMIQKNVVSMNGLMEGRRKGKEVHGYLIRSGLFDMVAVGNGLVNMYAKCGTI----DDSRSVFRFMIG 319 (934)
Q Consensus 244 ~g~~~~A~~l~~~m~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~----~~A~~~f~~~~~ 319 (934)
.|+.++|..++++..+.++ +......+..+|++-+++ ..|.+++...++
T Consensus 90 ~~~~d~~~~~Ye~~~~~~P---------------------------~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk 142 (932)
T KOG2053|consen 90 LGKLDEAVHLYERANQKYP---------------------------SEELLYHLFMAYVREKSYKKQQKAALQLYKNFPK 142 (932)
T ss_pred HhhhhHHHHHHHHHHhhCC---------------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 9999999999999877653 333444555666666555 346677776665
Q ss_pred CCcccHHHHHHHHHhC-CChh---------HHHHHHHHHHHCC-CCCChhhHHHHHHHhhccCchHHHHHHHH-HHhhhC
Q 046194 320 KDSVSWNTMISGLDQN-GCYE---------EAIMNFCAMRRDG-LMSSNFSLISTLSSCASLGWIMLGQQIHG-EGLKLG 387 (934)
Q Consensus 320 ~~~~~~~~li~~~~~~-g~~~---------~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~~~~~~a~~i~~-~~~~~g 387 (934)
+--.-|+. ++.+.+. ...+ -|.+.++.+.+.+ -.-+..-...-+......+..++|..++. .....-
T Consensus 143 ~~yyfWsV-~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l 221 (932)
T KOG2053|consen 143 RAYYFWSV-ISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKL 221 (932)
T ss_pred ccchHHHH-HHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhc
Confidence 54445543 3444332 1222 2333344444332 11111111122223334555666666652 222222
Q ss_pred CCCchhHHHHHHHHHHhcCChHHHHHHHhhC
Q 046194 388 LDSDVSVSNALLSLYADAGYLSRCLKVFFLM 418 (934)
Q Consensus 388 ~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~ 418 (934)
..-+...-+.-++.+...+++.+-.++-.++
T Consensus 222 ~~~~~~l~~~~~dllk~l~~w~~l~~l~~~L 252 (932)
T KOG2053|consen 222 TSANLYLENKKLDLLKLLNRWQELFELSSRL 252 (932)
T ss_pred cccchHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 3334445555666677777666655544443
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.97 E-value=1.2e-05 Score=53.64 Aligned_cols=35 Identities=37% Similarity=0.519 Sum_probs=32.8
Q ss_pred ccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCh
Q 046194 323 VSWNTMISGLDQNGCYEEAIMNFCAMRRDGLMSSN 357 (934)
Q Consensus 323 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 357 (934)
++||+||.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999973
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.0025 Score=62.12 Aligned_cols=176 Identities=11% Similarity=0.082 Sum_probs=114.9
Q ss_pred HHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCCCCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh
Q 046194 583 VHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPVRNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDH 662 (934)
Q Consensus 583 i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 662 (934)
+.+.+.......+......-...|.+.|++++|.+...... +..+.-.=+..+.+..+.+-|.+.+++|.+ --+.
T Consensus 95 l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~---ided 169 (299)
T KOG3081|consen 95 LYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE--NLEAAALNVQILLKMHRFDLAEKELKKMQQ---IDED 169 (299)
T ss_pred HHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---cchH
Confidence 34444444444443333344456888899999998888743 333332233445566778889999999987 2356
Q ss_pred hhHHHHHHHHHh----hCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhC--CCCCCHHHHHHH
Q 046194 663 VTFVGVLSACSH----AGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKM--PITPNSLIWRTV 736 (934)
Q Consensus 663 ~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m--~~~p~~~~~~~l 736 (934)
.|.+.|..++.+ .+.+.+|.-+|++|.+ ...|+..+.+.+..+....|++++|..++++. ....++.+...+
T Consensus 170 ~tLtQLA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nl 247 (299)
T KOG3081|consen 170 ATLTQLAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANL 247 (299)
T ss_pred HHHHHHHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 677777776543 4568888888888877 36677777888888888888888888888877 333345555555
Q ss_pred HHHHHhccCCCcHHHHHHHHHHHhcCCCCC
Q 046194 737 LGACCRANCRKTELGRKAANMLFEMEPQNA 766 (934)
Q Consensus 737 l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 766 (934)
+-.-...+ .+.+--.+...++....|+.+
T Consensus 248 iv~a~~~G-kd~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 248 IVLALHLG-KDAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred HHHHHHhC-CChHHHHHHHHHHHhcCCcch
Confidence 54444442 455566667777777777653
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00037 Score=67.93 Aligned_cols=150 Identities=11% Similarity=0.107 Sum_probs=92.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhc
Q 046194 633 MISGYARHGHGDKALTLFSQMKLDGPLPD-HVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRA 711 (934)
Q Consensus 633 li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~ 711 (934)
+-..+...|+.+....+..+.... .|. .......+......|++.+|...|++... .-+||...|+.+.-+|.+.
T Consensus 72 ~a~a~~~~G~a~~~l~~~~~~~~~--~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 72 LATALYLRGDADSSLAVLQKSAIA--YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHhcccccchHHHHhhhhcc--CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHHc
Confidence 344455555555555555554331 222 22233355555666666666666666654 3444566666666666666
Q ss_pred CChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHH
Q 046194 712 GELDKIEEFINKM-PITP-NSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKA 788 (934)
Q Consensus 712 g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~ 788 (934)
|++++|..-|.+. .+.| ++.+.+.|...+... |+.+.|+..+..+....+.|+..-..|+-+....|+.++|.++
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~--gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 148 GRFDEARRAYRQALELAPNEPSIANNLGMSLLLR--GDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred cChhHHHHHHHHHHHhccCCchhhhhHHHHHHHc--CCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhh
Confidence 6666666666555 4444 345566666666666 7777777777777777777777777777777777777777665
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.0022 Score=68.13 Aligned_cols=118 Identities=21% Similarity=0.211 Sum_probs=72.5
Q ss_pred HHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhccCCCcH
Q 046194 672 CSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKM-PITPN-SLIWRTVLGACCRANCRKTE 749 (934)
Q Consensus 672 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~~ 749 (934)
....|..++|+..++.+... .+-|+..+....+.+.+.|+.++|.+.++++ ...|+ ...+-++..++... |+..
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~--g~~~ 391 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKG--GKPQ 391 (484)
T ss_pred HHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhc--CChH
Confidence 34456666666666666552 2233555555566666666666666666665 45555 44555666666666 6666
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHH
Q 046194 750 LGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMK 793 (934)
Q Consensus 750 ~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~ 793 (934)
+|.+..+....-+|+|+..|..|+..|..+|+-.+|...+.+..
T Consensus 392 eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 392 EAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred HHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 66666666666666666666666666666666666655554443
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00065 Score=79.06 Aligned_cols=143 Identities=10% Similarity=0.053 Sum_probs=116.8
Q ss_pred CCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCC--CCc-ccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhh-HH
Q 046194 591 CLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPV--RNV-YSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVT-FV 666 (934)
Q Consensus 591 ~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~ 666 (934)
....++..+-.|.......|+.++|..+++...+ ||. ..+..++..+.+.+++++|+..+++... ..|+..+ ..
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~ 158 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREIL 158 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHH
Confidence 3555788888999999999999999999998873 544 4777889999999999999999999998 4788655 44
Q ss_pred HHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhhcCChHHHHHHHHhC--CCCCCHHHHHHHHH
Q 046194 667 GVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGRAGELDKIEEFINKM--PITPNSLIWRTVLG 738 (934)
Q Consensus 667 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~ 738 (934)
.+..++.+.|.+++|..+|++... -.|+ ...+..+..++-..|+.++|...|++. ...|...-++.++.
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~---~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 230 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSR---QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLV 230 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHH
Confidence 555678899999999999999987 2344 788999999999999999999999987 34455555554444
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00041 Score=70.89 Aligned_cols=182 Identities=11% Similarity=-0.001 Sum_probs=121.3
Q ss_pred CCHhHHHHHHHHHhchhhHHHHHHHHHHHHHhCCC-C-cHhHHHHHHHHHHhcCCHHHHHHHhccCCC--CCcc----cc
Q 046194 559 LDHFTFATVLSACASVATLERGMEVHACGVRACLE-F-DVVIGSALVDMYSKCGRIDYASRFFDLMPV--RNVY----SW 630 (934)
Q Consensus 559 p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~-~-~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~----~~ 630 (934)
.....+......+...|+++.|...++.+.+.... | ....+..+...|.+.|++++|...++.+.+ |+.. ++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 34566777778888999999999999998875432 1 124667788999999999999999998863 3222 35
Q ss_pred cHHHHHHHHc--------CChHHHHHHHHHHHHCCCCCChhh-HHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccH
Q 046194 631 NSMISGYARH--------GHGDKALTLFSQMKLDGPLPDHVT-FVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQF 701 (934)
Q Consensus 631 ~~li~~~~~~--------g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y 701 (934)
..+..++.+. |++++|++.|+++.+. .|+... ...+... .. ... ... ...
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~-~~---~~~------~~~---------~~~ 169 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRM-DY---LRN------RLA---------GKE 169 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHH-HH---HHH------HHH---------HHH
Confidence 5555556554 7889999999999984 676532 2211111 00 000 000 011
Q ss_pred HHHHHHHhhcCChHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCC
Q 046194 702 SCMVDLLGRAGELDKIEEFINKM----PITP-NSLIWRTVLGACCRANCRKTELGRKAANMLFEMEP 763 (934)
Q Consensus 702 ~~li~~l~~~g~~~~A~~~~~~m----~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p 763 (934)
..+.+.|.+.|++++|...+++. |-.| ....|..+..++... |+.++|...++.+....|
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~l--g~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKL--GLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhhCC
Confidence 24566777888888888877766 2233 245777777788777 888888887777665554
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00024 Score=65.32 Aligned_cols=95 Identities=22% Similarity=0.277 Sum_probs=72.7
Q ss_pred cccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 046194 698 LEQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANM 775 (934)
Q Consensus 698 ~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~ 775 (934)
......++..+.+.|++++|.+.++.. ...| +...|..+...+... |+.+.|...++.+++++|+++..+..++.+
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~--~~~~~A~~~~~~~~~~~p~~~~~~~~la~~ 94 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQML--KEYEEAIDAYALAAALDPDDPRPYFHAAEC 94 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 344556666777777777777777766 3344 456677777777777 888888888888888888888888888999
Q ss_pred HHcCCChHHHHHHHHHHHh
Q 046194 776 YASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 776 ~~~~g~~~~a~~~~~~m~~ 794 (934)
|...|++++|.+.++...+
T Consensus 95 ~~~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 95 LLALGEPESALKALDLAIE 113 (135)
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 9999999998888877664
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.043 Score=55.50 Aligned_cols=173 Identities=9% Similarity=0.038 Sum_probs=111.8
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhhccC--CCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 046194 492 NETTIENALLSCYGKCGEMDDCEKIFARMSER--RDEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLS 569 (934)
Q Consensus 492 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 569 (934)
.|...+..-..+|...|++..|+.-+.....- .++.++.-+-..+-.-|+.+.++...++-++ +.||.......
T Consensus 187 Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~~-- 262 (504)
T KOG0624|consen 187 WDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFPF-- 262 (504)
T ss_pred chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHHH--
Confidence 35555666777888888888887766654431 2566666677777888999999888888776 46765332111
Q ss_pred HHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCC--CC--cc---cccHHHHHHHHcCC
Q 046194 570 ACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPV--RN--VY---SWNSMISGYARHGH 642 (934)
Q Consensus 570 a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~--~~---~~~~li~~~~~~g~ 642 (934)
| ..+.+..+.++.|.+ ....+++.++.+-.+...+ |. .+ .+..+-.+|...|+
T Consensus 263 -Y---KklkKv~K~les~e~----------------~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~ 322 (504)
T KOG0624|consen 263 -Y---KKLKKVVKSLESAEQ----------------AIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQ 322 (504)
T ss_pred -H---HHHHHHHHHHHHHHH----------------HHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCC
Confidence 1 112222222222221 2334555555555554432 22 22 34456667778899
Q ss_pred hHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhCcHHHHHHHHHHhHH
Q 046194 643 GDKALTLFSQMKLDGPLPD-HVTFVGVLSACSHAGLVDEGFKHFKSMSQ 690 (934)
Q Consensus 643 ~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 690 (934)
+.+|++.-.+..+ +.|| ..++.--..||.-..+++.|+.-|+...+
T Consensus 323 ~~eAiqqC~evL~--~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 323 FGEAIQQCKEVLD--IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred HHHHHHHHHHHHh--cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 9999999999988 6777 66777777788888899999999998876
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00043 Score=74.35 Aligned_cols=122 Identities=17% Similarity=0.157 Sum_probs=101.6
Q ss_pred HHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 046194 665 FVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCR 742 (934)
Q Consensus 665 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~ 742 (934)
..+|+..+...++++.|.++|+++.+. .|+ ....|+..+...++-.+|.+++++. ...| +...+......|..
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 445666777889999999999999874 244 5566888888889999999999887 4344 56666666677777
Q ss_pred ccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHH
Q 046194 743 ANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMK 793 (934)
Q Consensus 743 ~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~ 793 (934)
. ++.+.|...++++.++.|.+...|..|+.+|...|++++|.-.+..+.
T Consensus 247 k--~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 K--KKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred c--CCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 7 999999999999999999999999999999999999999998877664
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.82 E-value=2.7e-05 Score=51.47 Aligned_cols=34 Identities=26% Similarity=0.654 Sum_probs=32.0
Q ss_pred cccHHHHHHHHHcCCCchHHHHHHHHHHHccCCCCCCC
Q 046194 155 LISWNSIISVYSQRGDTISVFKLFSRMQREGFRYSLKP 192 (934)
Q Consensus 155 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~p 192 (934)
+.+||++|.+|++.|+++.|+++|++|++.|+ +|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv----~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGV----KP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC----CC
Confidence 46899999999999999999999999999998 77
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00031 Score=75.37 Aligned_cols=128 Identities=13% Similarity=0.108 Sum_probs=105.1
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHhccCCCCCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHh
Q 046194 596 VVIGSALVDMYSKCGRIDYASRFFDLMPVRNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPD-HVTFVGVLSACSH 674 (934)
Q Consensus 596 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~ 674 (934)
-....+|+..+...++++.|..+|+++.+.++..+-.|+..+...++-.+|++++++..+. .|. ...+..-...|.+
T Consensus 169 NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 169 NYLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAEFLLS 246 (395)
T ss_pred hHHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHh
Confidence 3444566777778899999999999998877777777888888899999999999999874 454 4444444456889
Q ss_pred hCcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhhcCChHHHHHHHHhCCCCC
Q 046194 675 AGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGRAGELDKIEEFINKMPITP 728 (934)
Q Consensus 675 ~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m~~~p 728 (934)
.++++.|+++.+++.+ ..|+ ..+|..|+.+|.+.|++++|+..++.+|+.|
T Consensus 247 k~~~~lAL~iAk~av~---lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 247 KKKYELALEIAKKAVE---LSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred cCCHHHHHHHHHHHHH---hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 9999999999999976 5677 6799999999999999999999999997554
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0024 Score=67.89 Aligned_cols=139 Identities=16% Similarity=0.127 Sum_probs=111.8
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHH-HHHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhhc
Q 046194 634 ISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLS-ACSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGRA 711 (934)
Q Consensus 634 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~-a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~ 711 (934)
.-.+...|++++|+..++++... .||...|..+.. .+...++.++|.+.++.+.. ..|+ ....-.+.++|.+.
T Consensus 313 A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~~a~all~~ 387 (484)
T COG4783 313 ALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALA---LDPNSPLLQLNLAQALLKG 387 (484)
T ss_pred HHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHHHHHHHHhc
Confidence 33455678899999999998884 788777766654 58899999999999999976 5677 55666788999999
Q ss_pred CChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHH
Q 046194 712 GELDKIEEFINKM--PITPNSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKAR 789 (934)
Q Consensus 712 g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~ 789 (934)
|+..+|...++.. ..+-|+..|..|..+|... |+..++.. ..+..|+..|+|++|....
T Consensus 388 g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~--g~~~~a~~-----------------A~AE~~~~~G~~~~A~~~l 448 (484)
T COG4783 388 GKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAEL--GNRAEALL-----------------ARAEGYALAGRLEQAIIFL 448 (484)
T ss_pred CChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHh--CchHHHHH-----------------HHHHHHHhCCCHHHHHHHH
Confidence 9999999999987 3445788999999999999 88665544 4456678889999999988
Q ss_pred HHHHhCC
Q 046194 790 KAMKEAE 796 (934)
Q Consensus 790 ~~m~~~~ 796 (934)
...+++.
T Consensus 449 ~~A~~~~ 455 (484)
T COG4783 449 MRASQQV 455 (484)
T ss_pred HHHHHhc
Confidence 8777653
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0016 Score=68.68 Aligned_cols=185 Identities=12% Similarity=0.076 Sum_probs=131.0
Q ss_pred HHHHHhcCCHHHHHHHhccCCCC---CcccccHHHHHHHHcC-ChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhCc
Q 046194 603 VDMYSKCGRIDYASRFFDLMPVR---NVYSWNSMISGYARHG-HGDKALTLFSQMKLDGPLPD-HVTFVGVLSACSHAGL 677 (934)
Q Consensus 603 i~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~ 677 (934)
-..+.+.++.++|+.+.+.+... +..+|+..-..+...| +.++++..++++.+. .|+ ...|..-...+.+.|.
T Consensus 44 ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--npknyqaW~~R~~~l~~l~~ 121 (320)
T PLN02789 44 RAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED--NPKNYQIWHHRRWLAEKLGP 121 (320)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--CCcchHHhHHHHHHHHHcCc
Confidence 33455667788888888877643 3346666666666667 579999999999985 444 3456555444555665
Q ss_pred --HHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccC-CC----
Q 046194 678 --VDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCRANC-RK---- 747 (934)
Q Consensus 678 --~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~-~~---- 747 (934)
.++++.+++.+.+ +.|. ...|+....++.+.|++++|++.++++ ...| |..+|+.....+...+. |.
T Consensus 122 ~~~~~el~~~~kal~---~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~ 198 (320)
T PLN02789 122 DAANKELEFTRKILS---LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAM 198 (320)
T ss_pred hhhHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhcccccccccc
Confidence 3678888888876 3444 778888888999999999999999998 4444 56788777766654300 11
Q ss_pred cHHHHHHHHHHHhcCCCCCchHHHHHHHHHcC----CChHHHHHHHHHH
Q 046194 748 TELGRKAANMLFEMEPQNAVNYVLLANMYASG----GKWEDVAKARKAM 792 (934)
Q Consensus 748 ~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~----g~~~~a~~~~~~m 792 (934)
.+.......++++++|+|.+.|..+..+|... ++..+|.+.....
T Consensus 199 ~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~ 247 (320)
T PLN02789 199 RDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEV 247 (320)
T ss_pred HHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHh
Confidence 24567777899999999999999999999884 3445566655443
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.77 E-value=3.8e-05 Score=50.74 Aligned_cols=34 Identities=18% Similarity=0.354 Sum_probs=30.8
Q ss_pred cccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC
Q 046194 322 SVSWNTMISGLDQNGCYEEAIMNFCAMRRDGLMS 355 (934)
Q Consensus 322 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 355 (934)
+.+||.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3689999999999999999999999999999887
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.75 E-value=3.2e-05 Score=49.82 Aligned_cols=31 Identities=29% Similarity=0.625 Sum_probs=28.6
Q ss_pred ccHHHHHHHHHcCCCchHHHHHHHHHHHccC
Q 046194 156 ISWNSIISVYSQRGDTISVFKLFSRMQREGF 186 (934)
Q Consensus 156 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 186 (934)
++||+||++|++.|++++|.++|++|++.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 5899999999999999999999999998874
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0071 Score=71.26 Aligned_cols=80 Identities=14% Similarity=0.059 Sum_probs=40.5
Q ss_pred HHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCCCCcccccHHHHHHHHcCC
Q 046194 563 TFATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPVRNVYSWNSMISGYARHGH 642 (934)
Q Consensus 563 t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 642 (934)
.+..+..+|.+.|..+++.++++.+++.. +-|+.+.|.+...|+.. ++++|.+++.... ..|...++
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV-----------~~~i~~kq 184 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAI-----------YRFIKKKQ 184 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHH-----------HHHHhhhc
Confidence 44444445555555555555555555543 22455555555555555 5555555544322 22444445
Q ss_pred hHHHHHHHHHHHH
Q 046194 643 GDKALTLFSQMKL 655 (934)
Q Consensus 643 ~~~A~~l~~~m~~ 655 (934)
+.++.++|.++..
T Consensus 185 ~~~~~e~W~k~~~ 197 (906)
T PRK14720 185 YVGIEEIWSKLVH 197 (906)
T ss_pred chHHHHHHHHHHh
Confidence 5555555555555
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0011 Score=60.78 Aligned_cols=114 Identities=11% Similarity=0.042 Sum_probs=84.7
Q ss_pred HHHHHHHCCCCCCh-hhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhC-CC
Q 046194 649 LFSQMKLDGPLPDH-VTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKM-PI 726 (934)
Q Consensus 649 l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m-~~ 726 (934)
+|++..+ ..|+. .....+...+...|++++|.+.|+...+. -+.+...+..+...+.+.|++++|.+.+++. ..
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4555555 35553 33555666778888999999998888762 2334677888888888899999999888876 44
Q ss_pred CC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCch
Q 046194 727 TP-NSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVN 768 (934)
Q Consensus 727 ~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 768 (934)
.| +...|..+...+... |+.+.|...++++++++|++...
T Consensus 81 ~p~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~p~~~~~ 121 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLAL--GEPESALKALDLAIEICGENPEY 121 (135)
T ss_pred CCCChHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhccccchH
Confidence 45 456677777777777 99999999999999999987653
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0001 Score=47.35 Aligned_cols=31 Identities=35% Similarity=0.665 Sum_probs=27.3
Q ss_pred hhHHHHHHHHhcCCChhhHHHHHHHHHHcCC
Q 046194 52 VSWACIVSGYTHKGMSNEACKMFKEMVRAGF 82 (934)
Q Consensus 52 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 82 (934)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 5799999999999999999999999988774
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.049 Score=64.50 Aligned_cols=27 Identities=7% Similarity=0.068 Sum_probs=16.1
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhhC
Q 046194 392 VSVSNALLSLYADAGYLSRCLKVFFLM 418 (934)
Q Consensus 392 ~~~~~~li~~y~~~g~~~~A~~~f~~~ 418 (934)
...+..|+..|...+++++|.++.+..
T Consensus 31 ~~a~~~Li~~~~~~~~~deai~i~~~~ 57 (906)
T PRK14720 31 FKELDDLIDAYKSENLTDEAKDICEEH 57 (906)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 345566666666666666666665543
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.001 Score=66.21 Aligned_cols=94 Identities=16% Similarity=0.148 Sum_probs=73.5
Q ss_pred HHHHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhccCC
Q 046194 670 SACSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGRAGELDKIEEFINKM-PITPN-SLIWRTVLGACCRANCR 746 (934)
Q Consensus 670 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~ 746 (934)
.-..+.+++++|+..|...++ +.|+ ..-|..=..+|.+.|.++.|++-.+.. .+.|. ...|..|.-++... |
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~---l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~--g 163 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIE---LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLAL--G 163 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHh---cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHcc--C
Confidence 345677888888888888876 5666 555566678888888888888887776 66776 44788888888888 8
Q ss_pred CcHHHHHHHHHHHhcCCCCCch
Q 046194 747 KTELGRKAANMLFEMEPQNAVN 768 (934)
Q Consensus 747 ~~~~a~~~~~~~~~~~p~~~~~ 768 (934)
++++|+++|+++++++|+|...
T Consensus 164 k~~~A~~aykKaLeldP~Ne~~ 185 (304)
T KOG0553|consen 164 KYEEAIEAYKKALELDPDNESY 185 (304)
T ss_pred cHHHHHHHHHhhhccCCCcHHH
Confidence 8888888888888888888643
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0013 Score=55.58 Aligned_cols=92 Identities=23% Similarity=0.320 Sum_probs=72.7
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHc
Q 046194 701 FSCMVDLLGRAGELDKIEEFINKM-PITPN-SLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYAS 778 (934)
Q Consensus 701 y~~li~~l~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~ 778 (934)
+..+...+.+.|++++|.+.+++. ...|+ ...|..+...+... ++.+.|...++.+.+..|.++..+..++.++..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKL--GKYEEALEDYEKALELDPDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHH
Confidence 455667777788888888888776 44443 35666677777777 889999999999999999888888999999999
Q ss_pred CCChHHHHHHHHHHHh
Q 046194 779 GGKWEDVAKARKAMKE 794 (934)
Q Consensus 779 ~g~~~~a~~~~~~m~~ 794 (934)
.|++++|.+.++...+
T Consensus 81 ~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 LGKYEEALEAYEKALE 96 (100)
T ss_pred HHhHHHHHHHHHHHHc
Confidence 9999999888776653
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0032 Score=58.42 Aligned_cols=45 Identities=16% Similarity=0.254 Sum_probs=26.1
Q ss_pred CCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHH
Q 046194 746 RKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKA 791 (934)
Q Consensus 746 ~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~ 791 (934)
|+++.|...++.. .-.+-.+..+..++++|.+.|++++|...++.
T Consensus 99 ~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 99 GQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred CCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 5555555554331 12223345566777777777777777776654
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.002 Score=69.64 Aligned_cols=95 Identities=13% Similarity=0.087 Sum_probs=46.4
Q ss_pred HHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCc
Q 046194 672 CSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCRANCRKT 748 (934)
Q Consensus 672 ~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~ 748 (934)
+...|++++|+..|+++.+ ..|+ ...|..+..+|.+.|++++|+..++++ .+.| +...|..+..+|... |++
T Consensus 12 a~~~~~~~~Ai~~~~~Al~---~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~l--g~~ 86 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAID---LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKL--EEY 86 (356)
T ss_pred HHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh--CCH
Confidence 4445555555555555544 2232 344444455555555555555555544 3333 233444444444444 555
Q ss_pred HHHHHHHHHHHhcCCCCCchHHH
Q 046194 749 ELGRKAANMLFEMEPQNAVNYVL 771 (934)
Q Consensus 749 ~~a~~~~~~~~~~~p~~~~~y~~ 771 (934)
+.|...++++++++|+++.....
T Consensus 87 ~eA~~~~~~al~l~P~~~~~~~~ 109 (356)
T PLN03088 87 QTAKAALEKGASLAPGDSRFTKL 109 (356)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHH
Confidence 55555555555555555444433
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0015 Score=65.07 Aligned_cols=103 Identities=14% Similarity=0.171 Sum_probs=85.4
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhhcC
Q 046194 635 SGYARHGHGDKALTLFSQMKLDGPLPD-HVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGRAG 712 (934)
Q Consensus 635 ~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g 712 (934)
.-+.+.+++++|+..|.+.++ +.|+ .+-|..=..+|++.|.++.|++-.+.... +.|. ...|..|..+|...|
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~---iDp~yskay~RLG~A~~~~g 163 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS---IDPHYSKAYGRLGLAYLALG 163 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh---cChHHHHHHHHHHHHHHccC
Confidence 346678999999999999999 5665 56677777789999999999998877765 6777 789999999999999
Q ss_pred ChHHHHHHHHhC-CCCCCHHHHHHHHHHHHh
Q 046194 713 ELDKIEEFINKM-PITPNSLIWRTVLGACCR 742 (934)
Q Consensus 713 ~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~ 742 (934)
++++|.+.|++. .+.|+-.+|.+=|.....
T Consensus 164 k~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~ 194 (304)
T KOG0553|consen 164 KYEEAIEAYKKALELDPDNESYKSNLKIAEQ 194 (304)
T ss_pred cHHHHHHHHHhhhccCCCcHHHHHHHHHHHH
Confidence 999999999987 889987777655554443
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0031 Score=57.62 Aligned_cols=110 Identities=11% Similarity=0.055 Sum_probs=86.4
Q ss_pred HHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCC
Q 046194 703 CMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGG 780 (934)
Q Consensus 703 ~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g 780 (934)
....-+-..|++++|..+|.-+ -..| +..-|..|...|... ++++.|...+..+..++++||.++...+..|...|
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~--k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~ 119 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLK--KQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMR 119 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhC
Confidence 3444556789999999988876 2233 344577777777777 99999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhCCCcCCCceeEEEeCCEEEEEEcCCCCCCChHHHHHHHHHHHHHHHH
Q 046194 781 KWEDVAKARKAMKEAEVKKEAGCSWVTMKDGVHVFVAGDESHPEKDLIYEKLKELNQKMRD 841 (934)
Q Consensus 781 ~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~~ 841 (934)
+.++|.+.+....+ +|+...+.++...+.+.+++
T Consensus 120 ~~~~A~~~f~~a~~---------------------------~~~~~~l~~~A~~~L~~l~~ 153 (165)
T PRK15331 120 KAAKARQCFELVNE---------------------------RTEDESLRAKALVYLEALKT 153 (165)
T ss_pred CHHHHHHHHHHHHh---------------------------CcchHHHHHHHHHHHHHHHc
Confidence 99999999887763 35556666666666666654
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00024 Score=58.71 Aligned_cols=77 Identities=22% Similarity=0.300 Sum_probs=50.2
Q ss_pred CChHHHHHHHHhC-CCC---CCHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHH
Q 046194 712 GELDKIEEFINKM-PIT---PNSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAK 787 (934)
Q Consensus 712 g~~~~A~~~~~~m-~~~---p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~ 787 (934)
|++++|+.+++++ ... |+...|-.+..++... |+.+.|..++++ .+.+|.++.....++.+|.+.|++++|.+
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~--~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQ--GKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHT--THHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHC--CCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 5556666666555 122 2344555566666666 777777777777 66666666666777888888888888888
Q ss_pred HHHH
Q 046194 788 ARKA 791 (934)
Q Consensus 788 ~~~~ 791 (934)
++++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 7764
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.024 Score=55.51 Aligned_cols=84 Identities=13% Similarity=0.161 Sum_probs=41.2
Q ss_pred HHhcCCHHHHHHHhccCCCCC-cccccHHHHHHHH----cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHH
Q 046194 606 YSKCGRIDYASRFFDLMPVRN-VYSWNSMISGYAR----HGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDE 680 (934)
Q Consensus 606 y~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 680 (934)
+.|..+++-|.+.++.|.+-| -.+.+.|..++.+ .+...+|.-+|++|-++ ..|+..+.+....+|...|++++
T Consensus 147 ~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~ee 225 (299)
T KOG3081|consen 147 LLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEE 225 (299)
T ss_pred HHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHH
Confidence 334444555555555554322 2234444444332 22345555555555543 34555555555555555555555
Q ss_pred HHHHHHHhHH
Q 046194 681 GFKHFKSMSQ 690 (934)
Q Consensus 681 a~~~~~~m~~ 690 (934)
|..+++....
T Consensus 226 Ae~lL~eaL~ 235 (299)
T KOG3081|consen 226 AESLLEEALD 235 (299)
T ss_pred HHHHHHHHHh
Confidence 5555555554
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.019 Score=55.71 Aligned_cols=161 Identities=17% Similarity=0.200 Sum_probs=110.7
Q ss_pred HHHhcCCHHHHHHHhccCCCCCcccccHH---HHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHH
Q 046194 605 MYSKCGRIDYASRFFDLMPVRNVYSWNSM---ISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEG 681 (934)
Q Consensus 605 ~y~~~g~~~~A~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 681 (934)
+...+|+.+.|...++.+...-+.++... ..-+-..|++++|+++++...+.+ +.|.+++.-=+...-..|+.-+|
T Consensus 61 AAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~a 139 (289)
T KOG3060|consen 61 AALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEA 139 (289)
T ss_pred HHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHH
Confidence 33455666666666655543222222221 112345688889999999988875 44567776666666777888888
Q ss_pred HHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcc-CCCcHHHHHHHHHH
Q 046194 682 FKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCRAN-CRKTELGRKAANML 758 (934)
Q Consensus 682 ~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~-~~~~~~a~~~~~~~ 758 (934)
++-+....+. +.-|.+.|.-+.+.|...|++++|.--++++ -+.| ++..+..|.......+ ..|++.+...+.++
T Consensus 140 Ik~ln~YL~~--F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~a 217 (289)
T KOG3060|consen 140 IKELNEYLDK--FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERA 217 (289)
T ss_pred HHHHHHHHHH--hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 8888888874 6677889999999999999999999888888 3455 3445555555555441 14677888999999
Q ss_pred HhcCCCCCch
Q 046194 759 FEMEPQNAVN 768 (934)
Q Consensus 759 ~~~~p~~~~~ 768 (934)
+++.|.+...
T Consensus 218 lkl~~~~~ra 227 (289)
T KOG3060|consen 218 LKLNPKNLRA 227 (289)
T ss_pred HHhChHhHHH
Confidence 9999966443
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0032 Score=56.14 Aligned_cols=98 Identities=8% Similarity=0.027 Sum_probs=44.9
Q ss_pred HHHHHHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHH
Q 046194 668 VLSACSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGRAGELDKIEEFINKM-PITPN----SLIWRTVLGACC 741 (934)
Q Consensus 668 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~ 741 (934)
+...+...|++++|.+.|..+.+.+.-.|. ...+..+..++.+.|++++|.+.+++. ...|+ ..++..+...+.
T Consensus 8 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 87 (119)
T TIGR02795 8 AALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQ 87 (119)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHH
Confidence 333444445555555555544432111010 123333444555555555555555443 11222 234444444555
Q ss_pred hccCCCcHHHHHHHHHHHhcCCCCCc
Q 046194 742 RANCRKTELGRKAANMLFEMEPQNAV 767 (934)
Q Consensus 742 ~~~~~~~~~a~~~~~~~~~~~p~~~~ 767 (934)
.. |+.+.|...++.+++..|+++.
T Consensus 88 ~~--~~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 88 EL--GDKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred Hh--CChHHHHHHHHHHHHHCcCChh
Confidence 55 5666666666666666665543
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0075 Score=55.98 Aligned_cols=114 Identities=16% Similarity=0.104 Sum_probs=54.2
Q ss_pred cCChHHHHHHHHHHHHCCCCCCh----hhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC--cccHHHHHHHHhhcCC
Q 046194 640 HGHGDKALTLFSQMKLDGPLPDH----VTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ--LEQFSCMVDLLGRAGE 713 (934)
Q Consensus 640 ~g~~~~A~~l~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~y~~li~~l~~~g~ 713 (934)
.++...+...++++.+. .|+. .....+...+...|++++|...|+..... ...|. ....-.|...+...|+
T Consensus 24 ~~~~~~~~~~~~~l~~~--~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~LA~~~~~~~~ 100 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKD--YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRLARILLQQGQ 100 (145)
T ss_pred CCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHHHHHHHHcCC
Confidence 45555555555555553 2222 11222233455556666666666655553 21121 1123334555555666
Q ss_pred hHHHHHHHHhCCCC-CCHHHHHHHHHHHHhccCCCcHHHHHHHHHH
Q 046194 714 LDKIEEFINKMPIT-PNSLIWRTVLGACCRANCRKTELGRKAANML 758 (934)
Q Consensus 714 ~~~A~~~~~~m~~~-p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~ 758 (934)
+++|+..++..+.. ..+..+..+...+... |+.+.|..+++++
T Consensus 101 ~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~--g~~~~A~~~y~~A 144 (145)
T PF09976_consen 101 YDEALATLQQIPDEAFKALAAELLGDIYLAQ--GDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHHhccCcchHHHHHHHHHHHHHHC--CCHHHHHHHHHHh
Confidence 66666666554211 1233444444455555 6666666665554
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.017 Score=56.13 Aligned_cols=158 Identities=13% Similarity=0.101 Sum_probs=122.6
Q ss_pred ccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHH-HHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHH
Q 046194 630 WNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLS-ACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLL 708 (934)
Q Consensus 630 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~-a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l 708 (934)
|..++-+....|+.+.|...++++... + |.+.-...+=. -+...|.+++|++++++..++ -+-|..+|--=+-++
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~d--dpt~~v~~KRKlAil 130 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLED--DPTDTVIRKRKLAIL 130 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhcc--CcchhHHHHHHHHHH
Confidence 344555666789999999999999886 2 66544332222 256789999999999999884 233466666666677
Q ss_pred hhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCCh---H
Q 046194 709 GRAGELDKIEEFINKM--PITPNSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKW---E 783 (934)
Q Consensus 709 ~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~---~ 783 (934)
-..|+--+|++-+.+. .+..|...|.-|...|... |+++.|.-.++.++=++|.++..+..++++++-.|-. +
T Consensus 131 ka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~--~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~ 208 (289)
T KOG3060|consen 131 KAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSE--GDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLE 208 (289)
T ss_pred HHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhH--hHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHH
Confidence 7788777888777666 5677899999999999999 9999999999999999999999999999999888854 4
Q ss_pred HHHHHHHHHH
Q 046194 784 DVAKARKAMK 793 (934)
Q Consensus 784 ~a~~~~~~m~ 793 (934)
-|.+.+....
T Consensus 209 ~arkyy~~al 218 (289)
T KOG3060|consen 209 LARKYYERAL 218 (289)
T ss_pred HHHHHHHHHH
Confidence 4555555444
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0069 Score=68.46 Aligned_cols=139 Identities=12% Similarity=0.011 Sum_probs=62.5
Q ss_pred CCCcccccHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHHhh--------CcHHHHHHHHHHhH
Q 046194 624 VRNVYSWNSMISGYARH-----GHGDKALTLFSQMKLDGPLPDH-VTFVGVLSACSHA--------GLVDEGFKHFKSMS 689 (934)
Q Consensus 624 ~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~--------g~~~~a~~~~~~m~ 689 (934)
..|...|...+.+.... ++.++|+.+|++..+ ..||. ..+..+..++... ..+..+.+..+...
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 34556666666654432 226688899999888 46773 3343332222111 01122222222211
Q ss_pred HhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCC
Q 046194 690 QVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKM-PITPNSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNA 766 (934)
Q Consensus 690 ~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 766 (934)
..-....+...|..+.-.....|++++|...++++ ...|+...|..+...+... |+.++|...+++++.++|.++
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~--G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELK--GDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCCCc
Confidence 10001112233444433333444555555555444 3444444444444444444 555555555555555555444
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.42 Score=53.97 Aligned_cols=339 Identities=11% Similarity=-0.002 Sum_probs=178.8
Q ss_pred CCCCCChhhHHH-----HHHHhhccCchHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhcCC---hHHHHHHHhhCCC--
Q 046194 351 DGLMSSNFSLIS-----TLSSCASLGWIMLGQQIHGEGLKLGLDSDVSVSNALLSLYADAGY---LSRCLKVFFLMPE-- 420 (934)
Q Consensus 351 ~g~~p~~~t~~~-----ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~---~~~A~~~f~~~~~-- 420 (934)
-|+..+..-|.. +++-+...+.+..|.++-..+-..-... ..++.....-+.+..+ .+-+..+-+++..
T Consensus 426 ~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~ 504 (829)
T KOG2280|consen 426 IGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL 504 (829)
T ss_pred cCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcccC
Confidence 355555544433 4455556666677777666553322122 4566666666666532 2334444444444
Q ss_pred CCccchHHHHHHHHhCCccHHHHHHHHHHHHHcC----CCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhcCCCchhH
Q 046194 421 HDQVSWNSVIGAFADSEALVSEAVKYYLDMRRAG----WSPNGVTFINILAAASSFSMGKLGHQVHAQVIKYNVANETTI 496 (934)
Q Consensus 421 ~~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g----~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~ 496 (934)
.+.++|..+.+--.+.|+. +-|..+++.=.+.+ +-.+-..+...+.-+...|+.+...++.-++.+.-
T Consensus 505 ~~~iSy~~iA~~Ay~~GR~-~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~------- 576 (829)
T KOG2280|consen 505 TPGISYAAIARRAYQEGRF-ELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL------- 576 (829)
T ss_pred CCceeHHHHHHHHHhcCcH-HHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH-------
Confidence 4567777777777777887 77777765322111 11122334555666667777777776665554321
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhccCCCcchHHHHHHHHHhcCChhHHHHHHHHH------HHcCCCCCHhHHHHHHHH
Q 046194 497 ENALLSCYGKCGEMDDCEKIFARMSERRDEVSWNSMISGYIHNELLPKAMNLVWFM------MQRGQRLDHFTFATVLSA 570 (934)
Q Consensus 497 ~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m------~~~g~~p~~~t~~~ll~a 570 (934)
+.-+.+.-..+...|..++.....+-|..+ +-+.| +.++..+++..|.-= ...|..|+. ...-.+
T Consensus 577 --~~s~l~~~l~~~p~a~~lY~~~~r~~~~~~---l~d~y-~q~dn~~~~a~~~~q~~~~~~~~~~r~~~l---k~~a~~ 647 (829)
T KOG2280|consen 577 --NRSSLFMTLRNQPLALSLYRQFMRHQDRAT---LYDFY-NQDDNHQALASFHLQASYAAETIEGRIPAL---KTAANA 647 (829)
T ss_pred --HHHHHHHHHHhchhhhHHHHHHHHhhchhh---hhhhh-hcccchhhhhhhhhhhhhhhhhhcccchhH---HHHHHH
Confidence 011111112223344444444333201111 11112 222222222222110 012333333 233334
Q ss_pred HhchhhHHHHH-------HH---HHHHH-HhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCCCCcccccHHHHHHHH
Q 046194 571 CASVATLERGM-------EV---HACGV-RACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPVRNVYSWNSMISGYAR 639 (934)
Q Consensus 571 ~~~~~~~~~a~-------~i---~~~~~-~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 639 (934)
|++.....-+. ++ ...+. +.|....--+.+--+.-+...|+..+|.++-.+..-||-..|-.-+.+++.
T Consensus 648 ~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~ 727 (829)
T KOG2280|consen 648 FAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALAD 727 (829)
T ss_pred HhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHh
Confidence 44433321111 11 11111 122222222333344445667888889998888888888888888888888
Q ss_pred cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHH
Q 046194 640 HGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEE 719 (934)
Q Consensus 640 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~ 719 (934)
.+++++-+++-+.+. + .+-|.-...+|.+.|+.+||.+++-+... +.-.+.+|.+.|++.+|.+
T Consensus 728 ~~kweeLekfAkskk-----s-PIGy~PFVe~c~~~~n~~EA~KYiprv~~----------l~ekv~ay~~~~~~~eAad 791 (829)
T KOG2280|consen 728 IKKWEELEKFAKSKK-----S-PIGYLPFVEACLKQGNKDEAKKYIPRVGG----------LQEKVKAYLRVGDVKEAAD 791 (829)
T ss_pred hhhHHHHHHHHhccC-----C-CCCchhHHHHHHhcccHHHHhhhhhccCC----------hHHHHHHHHHhccHHHHHH
Confidence 888887766554432 2 46677788889999999999888755422 1246788888898888877
Q ss_pred HHHh
Q 046194 720 FINK 723 (934)
Q Consensus 720 ~~~~ 723 (934)
+--+
T Consensus 792 ~A~~ 795 (829)
T KOG2280|consen 792 LAAE 795 (829)
T ss_pred HHHH
Confidence 6544
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0033 Score=56.00 Aligned_cols=95 Identities=14% Similarity=0.038 Sum_probs=79.8
Q ss_pred ccHHHHHHHHhhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCC---CchHH
Q 046194 699 EQFSCMVDLLGRAGELDKIEEFINKM-PITPN----SLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQN---AVNYV 770 (934)
Q Consensus 699 ~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~y~ 770 (934)
..+..++..+.+.|++++|.+.++++ ...|+ ...+..+...+... |+++.|...++.+....|++ +..+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~A~~~~~~~~~~~p~~~~~~~~~~ 80 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQ--GKYADAAKAFLAVVKKYPKSPKAPDALL 80 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHHCCCCCcccHHHH
Confidence 45667788899999999999999988 33343 34566677888888 99999999999999998886 55789
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHhC
Q 046194 771 LLANMYASGGKWEDVAKARKAMKEA 795 (934)
Q Consensus 771 ~l~~~~~~~g~~~~a~~~~~~m~~~ 795 (934)
.++.+|...|++++|.+.++.+.+.
T Consensus 81 ~~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 81 KLGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHHH
Confidence 9999999999999999999988764
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.00089 Score=52.85 Aligned_cols=64 Identities=19% Similarity=0.235 Sum_probs=57.6
Q ss_pred CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCC-ChHHHHHHHHHHHh
Q 046194 729 NSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGG-KWEDVAKARKAMKE 794 (934)
Q Consensus 729 ~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g-~~~~a~~~~~~m~~ 794 (934)
++.+|..+...+... |+++.|+..++++++++|+++..|..++.+|...| ++++|.+.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~--~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQ--GDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHT--THHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 467888888888888 99999999999999999999999999999999999 79999988877654
|
... |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.47 Score=52.79 Aligned_cols=315 Identities=14% Similarity=0.109 Sum_probs=145.2
Q ss_pred cCChHHHHHHHhhCCCCCccchHHHHHHHHhCCccHHHHHHHHHHHHHcCCCCCc----ccHHHHHHHHhccCCchHHHH
Q 046194 405 AGYLSRCLKVFFLMPEHDQVSWNSVIGAFADSEALVSEAVKYYLDMRRAGWSPNG----VTFINILAAASSFSMGKLGHQ 480 (934)
Q Consensus 405 ~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~----~t~~~ll~a~~~~~~~~~a~~ 480 (934)
-|.+++|.+++-.+..+|.. |..+.+.|++ -...++++. -|-..|. ..+..+-..++....++.|.+
T Consensus 747 ~g~feeaek~yld~drrDLA-----ielr~klgDw-frV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~ 817 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRDLA-----IELRKKLGDW-FRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAK 817 (1189)
T ss_pred hcchhHhhhhhhccchhhhh-----HHHHHhhhhH-HHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36666666666666665532 3334444444 333333321 1111111 233344444444444555554
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 046194 481 VHAQVIKYNVANETTIENALLSCYGKCGEMDDCEKIFARMSERRDEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLD 560 (934)
Q Consensus 481 i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 560 (934)
.+.+--.. ...+++|.+...+++-+.+-..+++ |....-.|...+...|.-++|.+.|-+-- .|
T Consensus 818 yY~~~~~~---------e~~~ecly~le~f~~LE~la~~Lpe--~s~llp~~a~mf~svGMC~qAV~a~Lr~s----~p- 881 (1189)
T KOG2041|consen 818 YYSYCGDT---------ENQIECLYRLELFGELEVLARTLPE--DSELLPVMADMFTSVGMCDQAVEAYLRRS----LP- 881 (1189)
T ss_pred HHHhccch---------HhHHHHHHHHHhhhhHHHHHHhcCc--ccchHHHHHHHHHhhchHHHHHHHHHhcc----Cc-
Confidence 44332111 2345555555555555555555544 44445556666667777777666553321 11
Q ss_pred HhHHHHHHHHHhchhhHHHHHHHHHHHHHhCCC-----------CcHhHHHHHHHHHHhcCCHHHHHHHhccCCCCCc--
Q 046194 561 HFTFATVLSACASVATLERGMEVHACGVRACLE-----------FDVVIGSALVDMYSKCGRIDYASRFFDLMPVRNV-- 627 (934)
Q Consensus 561 ~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~-----------~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~-- 627 (934)
...+.+|..++.+.+|.++-+...-..+. .+..+ .--|.++.+.|+.-+|-+++.+|.++..
T Consensus 882 ----kaAv~tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll~~~~~-~eaIe~~Rka~~~~daarll~qmae~e~~K 956 (1189)
T KOG2041|consen 882 ----KAAVHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLADANH-MEAIEKDRKAGRHLDAARLLSQMAEREQEK 956 (1189)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhcch-HHHHHHhhhcccchhHHHHHHHHhHHHhhc
Confidence 13445666666666665543321100000 00000 1135667777777777777777653211
Q ss_pred -ccccHHHHHHH----HcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHH
Q 046194 628 -YSWNSMISGYA----RHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFS 702 (934)
Q Consensus 628 -~~~~~li~~~~----~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~ 702 (934)
+-|-.+=..|. -..++.++++-.++....|...|... +...|...++-++.+..-. | ....||-
T Consensus 957 ~~p~lr~KklYVL~AlLvE~h~~~ik~~~~~~~~g~~~dat~-------lles~~l~~~~ri~~n~Wr--g--AEAyHFm 1025 (1189)
T KOG2041|consen 957 YVPYLRLKKLYVLGALLVENHRQTIKELRKIDKHGFLEDATD-------LLESGLLAEQSRILENTWR--G--AEAYHFM 1025 (1189)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCcchhhhh-------hhhhhhhhhHHHHHHhhhh--h--HHHHHHH
Confidence 11221111121 11233444444454444554333221 1233333444444332211 1 2244555
Q ss_pred HHHHHHhhcCChHHHHHHHHhC----CCCCCHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcC
Q 046194 703 CMVDLLGRAGELDKIEEFINKM----PITPNSLIWRTVLGACCRANCRKTELGRKAANMLFEME 762 (934)
Q Consensus 703 ~li~~l~~~g~~~~A~~~~~~m----~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~ 762 (934)
.|..--...|..+.|++.--.+ .+-|...+|..|.-+.+.. ..+...-+++-++...+
T Consensus 1026 ilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~--raFGtCSKAfmkLe~~e 1087 (1189)
T KOG2041|consen 1026 ILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAV--RAFGTCSKAFMKLEAFE 1087 (1189)
T ss_pred HHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhh--hhhhhhHHHHHHHHhhh
Confidence 5666667788999888654333 3445555665444333333 44555555665555444
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.00033 Score=45.79 Aligned_cols=32 Identities=34% Similarity=0.579 Sum_probs=30.5
Q ss_pred HHHHHhcCCCCCchHHHHHHHHHcCCChHHHH
Q 046194 755 ANMLFEMEPQNAVNYVLLANMYASGGKWEDVA 786 (934)
Q Consensus 755 ~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~ 786 (934)
++++++++|+|+..|..|+.+|...|++++|.
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 68899999999999999999999999999985
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0055 Score=51.50 Aligned_cols=91 Identities=14% Similarity=0.152 Sum_probs=51.9
Q ss_pred ccHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHH
Q 046194 630 WNSMISGYARHGHGDKALTLFSQMKLDGPLPD-HVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLL 708 (934)
Q Consensus 630 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l 708 (934)
|..+...+...|++++|+..|+++.+. .|+ ...+..+...+...|++++|.+.|+..... ...+...+..+...+
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~ 78 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALEL--DPDNAKAYYNLGLAY 78 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCcchhHHHHHHHHH
Confidence 344555666667777777777776653 333 244555555566666777777766666542 122234555555566
Q ss_pred hhcCChHHHHHHHHhC
Q 046194 709 GRAGELDKIEEFINKM 724 (934)
Q Consensus 709 ~~~g~~~~A~~~~~~m 724 (934)
...|++++|.+.+++.
T Consensus 79 ~~~~~~~~a~~~~~~~ 94 (100)
T cd00189 79 YKLGKYEEALEAYEKA 94 (100)
T ss_pred HHHHhHHHHHHHHHHH
Confidence 6666666666555543
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.013 Score=56.25 Aligned_cols=127 Identities=12% Similarity=0.126 Sum_probs=74.8
Q ss_pred cccHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHH
Q 046194 629 SWNSMISGYARHGHGDKALTLFSQMKLDGPLPD--HVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMV 705 (934)
Q Consensus 629 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li 705 (934)
.|..+...+...|++++|+..|++..+....|+ ...+..+...+.+.|++++|...+++..+ +.|+ ...+..+.
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg 113 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE---LNPKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcccHHHHHHHH
Confidence 555666666667777777777777665432222 23455555666667777777777766655 2233 44455555
Q ss_pred HHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCC
Q 046194 706 DLLGRAGELDKIEEFINKMPITPNSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGK 781 (934)
Q Consensus 706 ~~l~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~ 781 (934)
.+|...|+...+..-++.. . ..++.|...++++.+++|++ |..+...+...|+
T Consensus 114 ~~~~~~g~~~~a~~~~~~A------------------~--~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 114 VIYHKRGEKAEEAGDQDEA------------------E--ALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHcCChHhHhhCHHHH------------------H--HHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 5666666555544322211 0 23567788888888888877 5555555555554
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0052 Score=58.98 Aligned_cols=81 Identities=12% Similarity=0.069 Sum_probs=57.4
Q ss_pred ccHHHHHHHHhhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHH
Q 046194 699 EQFSCMVDLLGRAGELDKIEEFINKM-PITPN----SLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLA 773 (934)
Q Consensus 699 ~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~ 773 (934)
..|..+...+.+.|++++|...+++. ...|+ ...|..+...+... |+.+.|...++++++..|.++..+..++
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~lg 113 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASN--GEHDKALEYYHQALELNPKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 34555556666666666666666655 22222 34677777777777 8888888888888888888888888888
Q ss_pred HHHHcCCC
Q 046194 774 NMYASGGK 781 (934)
Q Consensus 774 ~~~~~~g~ 781 (934)
.+|...|+
T Consensus 114 ~~~~~~g~ 121 (172)
T PRK02603 114 VIYHKRGE 121 (172)
T ss_pred HHHHHcCC
Confidence 88888776
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.024 Score=59.35 Aligned_cols=131 Identities=15% Similarity=0.236 Sum_probs=70.6
Q ss_pred HHHHHHHHhcCCHHHHHHHhccCCCCCcccccHHHHHHHHc-CChHHHHHHHHHHHHC----CCCCC--hhhHHHHHHHH
Q 046194 600 SALVDMYSKCGRIDYASRFFDLMPVRNVYSWNSMISGYARH-GHGDKALTLFSQMKLD----GPLPD--HVTFVGVLSAC 672 (934)
Q Consensus 600 ~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~----g~~p~--~~t~~~ll~a~ 672 (934)
.-.++.|.+.|++..|-+.+.. +...|-.. |++++|++.|++..+. | .|. ...+..+...+
T Consensus 98 ~~A~~~y~~~G~~~~aA~~~~~-----------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~ 165 (282)
T PF14938_consen 98 EKAIEIYREAGRFSQAAKCLKE-----------LAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLY 165 (282)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHH-----------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHHH-----------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHH
Confidence 3345566677777666665544 34455555 6777777777776542 2 111 23355556667
Q ss_pred HhhCcHHHHHHHHHHhHHhhCCCCC-----c-ccHHHHHHHHhhcCChHHHHHHHHhC-CCCC------CHHHHHHHHHH
Q 046194 673 SHAGLVDEGFKHFKSMSQVYGLIPQ-----L-EQFSCMVDLLGRAGELDKIEEFINKM-PITP------NSLIWRTVLGA 739 (934)
Q Consensus 673 ~~~g~~~~a~~~~~~m~~~~~~~p~-----~-~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p------~~~~~~~ll~~ 739 (934)
...|++++|.++|++.... .+..+ . ..|-..+-++...|+...|.+.+++. ...| .......|+.+
T Consensus 166 ~~l~~y~~A~~~~e~~~~~-~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A 244 (282)
T PF14938_consen 166 ARLGRYEEAIEIYEEVAKK-CLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEA 244 (282)
T ss_dssp HHTT-HHHHHHHHHHHHHT-CCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHH-hhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHH
Confidence 7778888888888777653 12111 1 12233344555567777777777765 2222 13355666666
Q ss_pred HHhc
Q 046194 740 CCRA 743 (934)
Q Consensus 740 ~~~~ 743 (934)
|...
T Consensus 245 ~~~~ 248 (282)
T PF14938_consen 245 YEEG 248 (282)
T ss_dssp HHTT
T ss_pred HHhC
Confidence 6554
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.002 Score=50.04 Aligned_cols=56 Identities=14% Similarity=0.209 Sum_probs=44.4
Q ss_pred HHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHHh
Q 046194 737 LGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 737 l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 794 (934)
...+... |+++.|+..++.+++.+|+++..+..++.++...|++++|..+++.+.+
T Consensus 4 a~~~~~~--g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 4 ARALYQQ--GDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHC--THHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHc--CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3445556 8888888888888888888888888888888888888888888887754
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0048 Score=59.00 Aligned_cols=93 Identities=10% Similarity=-0.103 Sum_probs=70.7
Q ss_pred cccHHHHHHHHhhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHH
Q 046194 698 LEQFSCMVDLLGRAGELDKIEEFINKM-PITPN----SLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLL 772 (934)
Q Consensus 698 ~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l 772 (934)
...|..++..+...|++++|...+++. .+.|+ ..+|..+...+... |+.++|...++++++++|.....+..+
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~--g~~~eA~~~~~~Al~~~~~~~~~~~~l 112 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSN--GEHTKALEYYFQALERNPFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCcCcHHHHHHH
Confidence 445566666777778888888877766 33332 34788888888888 999999999999999999998888888
Q ss_pred HHHHH-------cCCChHHHHHHHHHH
Q 046194 773 ANMYA-------SGGKWEDVAKARKAM 792 (934)
Q Consensus 773 ~~~~~-------~~g~~~~a~~~~~~m 792 (934)
+.+|. ..|++++|...+++.
T Consensus 113 a~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 113 AVICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 88888 888888766655443
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.74 Score=48.60 Aligned_cols=122 Identities=14% Similarity=0.151 Sum_probs=90.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHhccCCCCCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcH
Q 046194 599 GSALVDMYSKCGRIDYASRFFDLMPVRNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLV 678 (934)
Q Consensus 599 ~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 678 (934)
.+.-|.-+...|+...|.++-.+..-||-.-|-..+.+|+..++|++-..+... +-.++-|..++.+|...|..
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~ 253 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNK 253 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCH
Confidence 344455667788999999999888889999999999999999999887765432 22347888899999999999
Q ss_pred HHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 046194 679 DEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKMPITPNSLIWRTVLGAC 740 (934)
Q Consensus 679 ~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~ 740 (934)
.+|..+...+ .+..-+.+|.++|++.+|.+.--+. -|...+..+...|
T Consensus 254 ~eA~~yI~k~-----------~~~~rv~~y~~~~~~~~A~~~A~~~---kd~~~L~~i~~~~ 301 (319)
T PF04840_consen 254 KEASKYIPKI-----------PDEERVEMYLKCGDYKEAAQEAFKE---KDIDLLKQILKRC 301 (319)
T ss_pred HHHHHHHHhC-----------ChHHHHHHHHHCCCHHHHHHHHHHc---CCHHHHHHHHHHC
Confidence 9998887653 1255678899999999998765554 2444444444443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.28 Score=50.88 Aligned_cols=284 Identities=16% Similarity=0.106 Sum_probs=186.7
Q ss_pred HHHHHHHHHHh--cCCHHHHHHHHHhhccC--CCcchHHHHHHH--HHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 046194 496 IENALLSCYGK--CGEMDDCEKIFARMSER--RDEVSWNSMISG--YIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLS 569 (934)
Q Consensus 496 ~~~~li~~~~~--~g~~~~A~~~~~~~~~~--p~~~~~~~li~~--~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 569 (934)
-|.+|-.++.. .|+-..|.++-.+...- -|....--++.+ -.-.|+++.|.+-|+.|... ..--...+..+.-
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d-PEtRllGLRgLyl 162 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD-PETRLLGLRGLYL 162 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC-hHHHHHhHHHHHH
Confidence 35666666644 57777788776654421 144444444433 34579999999999999863 1112233344444
Q ss_pred HHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCC-----CCCcc--cccHHHHHHHH---
Q 046194 570 ACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMP-----VRNVY--SWNSMISGYAR--- 639 (934)
Q Consensus 570 a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-----~~~~~--~~~~li~~~~~--- 639 (934)
...+.|+.+.|.++-+..-..-.. -.-...+.++..+..|+++.|+++++.-. ++|+. .-..|+.+-+.
T Consensus 163 eAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~l 241 (531)
T COG3898 163 EAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLL 241 (531)
T ss_pred HHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHh
Confidence 445778888888887776553221 34566788999999999999999998754 34543 33344443332
Q ss_pred cCChHHHHHHHHHHHHCCCCCChhh-HHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHH
Q 046194 640 HGHGDKALTLFSQMKLDGPLPDHVT-FVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIE 718 (934)
Q Consensus 640 ~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~ 718 (934)
.-+...|...-.+..+ +.||-+- -..-..++.+.|++.++-.+++.+-+ ..|.+..+... .+.|.|+. +.
T Consensus 242 dadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK---~ePHP~ia~lY--~~ar~gdt--a~ 312 (531)
T COG3898 242 DADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWK---AEPHPDIALLY--VRARSGDT--AL 312 (531)
T ss_pred cCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHh---cCCChHHHHHH--HHhcCCCc--HH
Confidence 3456777777777666 6788543 33445678999999999999999865 45666544332 23455543 33
Q ss_pred HHHHhC----CCCCC-HHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcC-CChHHHHHHHHHH
Q 046194 719 EFINKM----PITPN-SLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASG-GKWEDVAKARKAM 792 (934)
Q Consensus 719 ~~~~~m----~~~p~-~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~-g~~~~a~~~~~~m 792 (934)
.-+++. .++|| ....-++..+-... |++..|...++.+..+.|.. +.|.+|+++-... |+-.++..++-+.
T Consensus 313 dRlkRa~~L~slk~nnaes~~~va~aAlda--~e~~~ARa~Aeaa~r~~pre-s~~lLlAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 313 DRLKRAKKLESLKPNNAESSLAVAEAALDA--GEFSAARAKAEAAAREAPRE-SAYLLLADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred HHHHHHHHHHhcCccchHHHHHHHHHHHhc--cchHHHHHHHHHHhhhCchh-hHHHHHHHHHhhccCchHHHHHHHHHH
Confidence 333322 34565 44556666777777 99999999999999999975 7899999987666 8888877765444
Q ss_pred H
Q 046194 793 K 793 (934)
Q Consensus 793 ~ 793 (934)
.
T Consensus 390 v 390 (531)
T COG3898 390 V 390 (531)
T ss_pred h
Confidence 3
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0093 Score=64.57 Aligned_cols=104 Identities=13% Similarity=0.092 Sum_probs=85.8
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhhc
Q 046194 634 ISGYARHGHGDKALTLFSQMKLDGPLPD-HVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGRA 711 (934)
Q Consensus 634 i~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~ 711 (934)
...+...|++++|+.+|+++++. .|+ ...|..+..++...|++++|+..++.+.. +.|+ ...|..+..+|...
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~---l~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIE---LDPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCCHHHHHHHHHHHHHh
Confidence 45567789999999999999985 555 56677777889999999999999999977 4554 77888999999999
Q ss_pred CChHHHHHHHHhC-CCCCCHHHHHHHHHHHHh
Q 046194 712 GELDKIEEFINKM-PITPNSLIWRTVLGACCR 742 (934)
Q Consensus 712 g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~ 742 (934)
|++++|...+++. .+.|+......++..|..
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~ 115 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRFTKLIKECDE 115 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 9999999999987 677776666666666643
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.37 Score=50.83 Aligned_cols=105 Identities=16% Similarity=0.187 Sum_probs=77.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhccCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhchhhH
Q 046194 498 NALLSCYGKCGEMDDCEKIFARMSERRDEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVATL 577 (934)
Q Consensus 498 ~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 577 (934)
+..|.-+...|+...|.++-.+..- ||..-|-..|.+++..++|++-.++-. . +-+++.|-.++.+|...|..
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fkv-~dkrfw~lki~aLa~~~~w~eL~~fa~----s--kKsPIGyepFv~~~~~~~~~ 253 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFKV-PDKRFWWLKIKALAENKDWDELEKFAK----S--KKSPIGYEPFVEACLKYGNK 253 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcCC-cHHHHHHHHHHHHHhcCCHHHHHHHHh----C--CCCCCChHHHHHHHHHCCCH
Confidence 3445556677888888888777755 488889999999999999987666532 1 23458888888888888888
Q ss_pred HHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHh
Q 046194 578 ERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFF 619 (934)
Q Consensus 578 ~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~ 619 (934)
.+|..+...+ .+..-+.+|.++|++.+|.+.-
T Consensus 254 ~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 254 KEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred HHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHH
Confidence 8887776651 1245678888888888886653
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.013 Score=61.06 Aligned_cols=134 Identities=13% Similarity=0.158 Sum_probs=97.7
Q ss_pred cccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHH-HHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHH
Q 046194 629 SWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSA-CSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDL 707 (934)
Q Consensus 629 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a-~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~ 707 (934)
+|-.++....+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|.++|+...+.+ ..+...|...++.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f--~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF--PSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH--TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHH
Confidence 57777888888888889999999988532 2223334433333 333566777999999999864 4456778888999
Q ss_pred HhhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCc
Q 046194 708 LGRAGELDKIEEFINKM-PITPN----SLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAV 767 (934)
Q Consensus 708 l~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 767 (934)
+.+.|+.+.|..+|++. ..-|. ..+|...+.-=..+ |+++....+.+++.+.-|++..
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~--Gdl~~v~~v~~R~~~~~~~~~~ 142 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKY--GDLESVRKVEKRAEELFPEDNS 142 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHH--S-HHHHHHHHHHHHHHTTTS-H
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHhhhhhH
Confidence 99999999999999987 33333 35999999999999 9999999999999999888543
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.84 E-value=1 Score=49.09 Aligned_cols=439 Identities=11% Similarity=0.131 Sum_probs=236.6
Q ss_pred CcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC-ChhhHHHHHHHhhccCchHHHHHHHHHHhhhCCCCchhHHHHHH
Q 046194 321 DSVSWNTMISGLDQNGCYEEAIMNFCAMRRDGLMS-SNFSLISTLSSCASLGWIMLGQQIHGEGLKLGLDSDVSVSNALL 399 (934)
Q Consensus 321 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li 399 (934)
|+.+|+.||.-+-.. .++++.+.+++|.. .-| ....|..-+..-....+++.++.+|+..+..-+. ...|...+
T Consensus 19 di~sw~~lire~qt~-~~~~~R~~YEq~~~--~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLn--lDLW~lYl 93 (656)
T KOG1914|consen 19 DIDSWSQLIREAQTQ-PIDKVRETYEQLVN--VFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLN--LDLWKLYL 93 (656)
T ss_pred cHHHHHHHHHHHccC-CHHHHHHHHHHHhc--cCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh--HhHHHHHH
Confidence 889999999976555 99999999999986 444 4456777788888889999999999888776544 55555555
Q ss_pred HHHHh-cCChHHH----HHHHhh------CCCCCccchHHHHHH---------HHhCCccHHHHHHHHHHHHHcCCCCCc
Q 046194 400 SLYAD-AGYLSRC----LKVFFL------MPEHDQVSWNSVIGA---------FADSEALVSEAVKYYLDMRRAGWSPNG 459 (934)
Q Consensus 400 ~~y~~-~g~~~~A----~~~f~~------~~~~~~~~~~~li~~---------~~~~g~~~~~A~~l~~~m~~~g~~p~~ 459 (934)
+.--+ .|+...+ .+.|+- |.-.+-..|+.-|.- |.++.+. +...++++++....+.
T Consensus 94 ~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI-~~vRriYqral~tPm~--- 169 (656)
T KOG1914|consen 94 SYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRI-TAVRRIYQRALVTPMH--- 169 (656)
T ss_pred HHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHH-HHHHHHHHHHhcCccc---
Confidence 43222 1222221 111111 111223334444332 2233333 4444455544432110
Q ss_pred ccHHHHHHHHhccCCchHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhcc------C--CC------
Q 046194 460 VTFINILAAASSFSMGKLGHQVHAQVIKYNVANETTIENALLSCYGKCGEMDDCEKIFARMSE------R--RD------ 525 (934)
Q Consensus 460 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------~--p~------ 525 (934)
++ .+++..-.......+..+..-++ --+...+..|+++.+++.. + |.
T Consensus 170 --------------nl---EkLW~DY~~fE~~IN~~tarK~i--~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T 230 (656)
T KOG1914|consen 170 --------------NL---EKLWKDYEAFEQEINIITARKFI--GERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGT 230 (656)
T ss_pred --------------cH---HHHHHHHHHHHHHHHHHHHHHHH--HhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCC
Confidence 00 01111110000001111111111 0112234445555554433 1 10
Q ss_pred ------cchHHHHHHHHHhcCCh--------hHHHHHHHH-HHHcCCCCCHhH-HHHHHH----HHhchhh-------HH
Q 046194 526 ------EVSWNSMISGYIHNELL--------PKAMNLVWF-MMQRGQRLDHFT-FATVLS----ACASVAT-------LE 578 (934)
Q Consensus 526 ------~~~~~~li~~~~~~g~~--------~~A~~l~~~-m~~~g~~p~~~t-~~~ll~----a~~~~~~-------~~ 578 (934)
+..|-.+|.-=..++.- ....=.+++ |.-.+..|+..- +...+. .+...|+ -+
T Consensus 231 ~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~ 310 (656)
T KOG1914|consen 231 KDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTD 310 (656)
T ss_pred hHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHH
Confidence 11144444322221111 001111111 222344444321 111111 1222333 34
Q ss_pred HHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcC---CHHHHHHHhccCC----CCCcccccHHHHHHHHcCChHHHHHHHH
Q 046194 579 RGMEVHACGVRACLEFDVVIGSALVDMYSKCG---RIDYASRFFDLMP----VRNVYSWNSMISGYARHGHGDKALTLFS 651 (934)
Q Consensus 579 ~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g---~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~ 651 (934)
++..+++..+..-...+..+|.++.+.--..- ..+.....+++.. ..-..+|-..+..-.+..-.+.|..+|.
T Consensus 311 e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~ 390 (656)
T KOG1914|consen 311 EAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFK 390 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHH
Confidence 45555555444333334444444433211111 1233333444333 1223478888888888888999999999
Q ss_pred HHHHCCCCC-ChhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhC---CCC
Q 046194 652 QMKLDGPLP-DHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKM---PIT 727 (934)
Q Consensus 652 ~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m---~~~ 727 (934)
+..+.+..+ +.....+++.-++ .++.+-|.++|+.=.+.||-.| .--.+.++-+.+.|+-..|..+|++. .+.
T Consensus 391 kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d~p--~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~ 467 (656)
T KOG1914|consen 391 KAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGDSP--EYVLKYLDFLSHLNDDNNARALFERVLTSVLS 467 (656)
T ss_pred HHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCCCh--HHHHHHHHHHHHhCcchhHHHHHHHHHhccCC
Confidence 999998888 4455566665444 5789999999999887665443 34456788899999999999999987 245
Q ss_pred CC--HHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCC----CchHHHHHHHHHcCCChHHHHHHHHHH
Q 046194 728 PN--SLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQN----AVNYVLLANMYASGGKWEDVAKARKAM 792 (934)
Q Consensus 728 p~--~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~----~~~y~~l~~~~~~~g~~~~a~~~~~~m 792 (934)
|+ ..+|..+|.-=..- ||+.....+-++....-|.+ ...-..+.+-|.-.+.+..-..-++.|
T Consensus 468 ~~ks~~Iw~r~l~yES~v--GdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 468 ADKSKEIWDRMLEYESNV--GDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELKFL 536 (656)
T ss_pred hhhhHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHHhh
Confidence 54 46899999988888 99999999888877666622 123456666777777666554444444
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0031 Score=49.56 Aligned_cols=49 Identities=14% Similarity=0.273 Sum_probs=42.6
Q ss_pred CCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHHh
Q 046194 746 RKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 746 ~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 794 (934)
|+++.|...++++++.+|+++..+..++.+|.+.|++++|.++++.+..
T Consensus 5 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 5 GDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp THHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred cCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8889999999999999999999999999999999999999888776653
|
... |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.024 Score=47.90 Aligned_cols=79 Identities=15% Similarity=-0.010 Sum_probs=63.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCC-CCCHhHHHHHHHHHhch--------hhHHHHHHHHHHHHHhCCCCcHhHHH
Q 046194 530 NSMISGYIHNELLPKAMNLVWFMMQRGQ-RLDHFTFATVLSACASV--------ATLERGMEVHACGVRACLEFDVVIGS 600 (934)
Q Consensus 530 ~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~a~~~~--------~~~~~a~~i~~~~~~~~~~~~~~~~~ 600 (934)
...|..+...+++.....+|+.+.+.|+ .|+..+|+.++.+.++. +.+-..+.+++.++..++.|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3456666667889999999999999999 89999999999887653 24556778888899999999999999
Q ss_pred HHHHHHHh
Q 046194 601 ALVDMYSK 608 (934)
Q Consensus 601 ~li~~y~~ 608 (934)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 98877664
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.018 Score=48.61 Aligned_cols=80 Identities=16% Similarity=0.051 Sum_probs=66.8
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCC-CCChhhHHHHHHHhhccC--------chHHHHHHHHHHhhhCCCCchhHH
Q 046194 325 WNTMISGLDQNGCYEEAIMNFCAMRRDGL-MSSNFSLISTLSSCASLG--------WIMLGQQIHGEGLKLGLDSDVSVS 395 (934)
Q Consensus 325 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~a~~~~~--------~~~~a~~i~~~~~~~g~~~~~~~~ 395 (934)
-...|..+..++++.....+|+.+++.|+ .|+..+|+.+|.+.++.. .+-....+++.++..+++|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34566667777999999999999999999 999999999999887543 244567888999999999999999
Q ss_pred HHHHHHHHh
Q 046194 396 NALLSLYAD 404 (934)
Q Consensus 396 ~~li~~y~~ 404 (934)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 999887654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.022 Score=54.41 Aligned_cols=78 Identities=9% Similarity=-0.012 Sum_probs=50.0
Q ss_pred cccHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHH
Q 046194 629 SWNSMISGYARHGHGDKALTLFSQMKLDGPLPD--HVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMV 705 (934)
Q Consensus 629 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li 705 (934)
.|..+...+...|++++|+..|++.......|. ..++..+...+.+.|+.++|+..++...+ +.|+ ...+..+.
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~---~~~~~~~~~~~la 113 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE---RNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCcHHHHHHHH
Confidence 556666667777888888888887776422221 23566677777788888888888877765 2333 44455555
Q ss_pred HHHh
Q 046194 706 DLLG 709 (934)
Q Consensus 706 ~~l~ 709 (934)
..+.
T Consensus 114 ~i~~ 117 (168)
T CHL00033 114 VICH 117 (168)
T ss_pred HHHH
Confidence 5555
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.016 Score=60.14 Aligned_cols=87 Identities=15% Similarity=0.146 Sum_probs=66.1
Q ss_pred HHHhhcCChHHHHHHHHhC-CCCC-----CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcC
Q 046194 706 DLLGRAGELDKIEEFINKM-PITP-----NSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASG 779 (934)
Q Consensus 706 ~~l~~~g~~~~A~~~~~~m-~~~p-----~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~ 779 (934)
+-..+.|++.+|.+.+.+. .+.| ++..|.....+..+. |+..+|..-.+.+++++|.-...|..-++.+...
T Consensus 257 N~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rL--grl~eaisdc~~Al~iD~syikall~ra~c~l~l 334 (486)
T KOG0550|consen 257 NDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRL--GRLREAISDCNEALKIDSSYIKALLRRANCHLAL 334 (486)
T ss_pred hhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhccc--CCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHH
Confidence 3456778888888888776 4444 444555555556666 8888888888888888888888888888888888
Q ss_pred CChHHHHHHHHHHHh
Q 046194 780 GKWEDVAKARKAMKE 794 (934)
Q Consensus 780 g~~~~a~~~~~~m~~ 794 (934)
++|++|.+-++...+
T Consensus 335 e~~e~AV~d~~~a~q 349 (486)
T KOG0550|consen 335 EKWEEAVEDYEKAMQ 349 (486)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999988887776654
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.13 Score=54.50 Aligned_cols=160 Identities=17% Similarity=0.135 Sum_probs=103.9
Q ss_pred HHHHHHHhcCCHHHHHHHhccCCCC---Ccc----cccHHHHHHHH---cCChHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 046194 601 ALVDMYSKCGRIDYASRFFDLMPVR---NVY----SWNSMISGYAR---HGHGDKALTLFSQMKLDGPLPDHVTFVGVLS 670 (934)
Q Consensus 601 ~li~~y~~~g~~~~A~~~~~~~~~~---~~~----~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 670 (934)
.|+-.|....+++.-.++++.+... ++. .--...-++.+ .|+.++|++++..+....-.++..||..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 3444577777888888888777643 111 11123344455 7888999999988666656777778776666
Q ss_pred HHHh---------hCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHH----HHHHH---Hh-C------CCC
Q 046194 671 ACSH---------AGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDK----IEEFI---NK-M------PIT 727 (934)
Q Consensus 671 a~~~---------~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~----A~~~~---~~-m------~~~ 727 (934)
.|-. ....++|+..|.+. |.+.|+..+--.++.++.-.|.-.+ ..++- .. . .-.
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kg---Fe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKG---FEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHH---HcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 5432 22467777777765 4566775554455555555554222 22222 11 1 123
Q ss_pred CCHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCC
Q 046194 728 PNSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQN 765 (934)
Q Consensus 728 p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~ 765 (934)
.|.....+++.++... ||.+.+.+++++++.+.|+.
T Consensus 303 ~dYWd~ATl~Ea~vL~--~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 303 QDYWDVATLLEASVLA--GDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred ccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhhcCCcc
Confidence 4666778999999999 99999999999999998876
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.29 Score=53.91 Aligned_cols=97 Identities=13% Similarity=0.150 Sum_probs=61.1
Q ss_pred HHHHHHhcCCHHHHHHHhccCCCCCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHH
Q 046194 602 LVDMYSKCGRIDYASRFFDLMPVRNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEG 681 (934)
Q Consensus 602 li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 681 (934)
-.+++...|+.++|..+. ..+|..+-++++-+++-. .+..+...+..-+.+...+.-|
T Consensus 709 AAEmLiSaGe~~KAi~i~------------------~d~gW~d~lidI~rkld~----~ere~l~~~a~ylk~l~~~gLA 766 (1081)
T KOG1538|consen 709 AAEMLISAGEHVKAIEIC------------------GDHGWVDMLIDIARKLDK----AEREPLLLCATYLKKLDSPGLA 766 (1081)
T ss_pred HHHHhhcccchhhhhhhh------------------hcccHHHHHHHHHhhcch----hhhhHHHHHHHHHhhccccchH
Confidence 445666677777776543 345555555555555433 2233444444444556667778
Q ss_pred HHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhCC-CCCCH
Q 046194 682 FKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKMP-ITPNS 730 (934)
Q Consensus 682 ~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p~~ 730 (934)
-++|.+|-. ...++++....|+|++|..+-++.| ..||+
T Consensus 767 aeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe~~~dV 806 (1081)
T KOG1538|consen 767 AEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPEFKDDV 806 (1081)
T ss_pred HHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCccccccc
Confidence 888888754 2467888888899999988888874 45554
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=96.65 E-value=2 Score=49.90 Aligned_cols=215 Identities=12% Similarity=0.075 Sum_probs=114.0
Q ss_pred CChhHHHHHHhcCCCCCc-ccHHHHHHHH--HhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCchHHHHHHHH
Q 046194 305 GTIDDSRSVFRFMIGKDS-VSWNTMISGL--DQNGCYEEAIMNFCAMRRDGLMSSNFSLISTLSSCASLGWIMLGQQIHG 381 (934)
Q Consensus 305 g~~~~A~~~f~~~~~~~~-~~~~~li~~~--~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~ 381 (934)
+++..|....+.+.++.+ ..|...+.++ .+.|+.++|..+++.....+.. |..|...+-..+...+..+++..+++
T Consensus 23 ~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye 101 (932)
T KOG2053|consen 23 SQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYE 101 (932)
T ss_pred HHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 444555555444433211 2233333333 3566666666666655444333 55566666666666666666666666
Q ss_pred HHhhhCCCCchhHHHHHHHHHHhcCChH----HHHHHHhhCCCCCccchHHHHHHHHhCC---------ccHHHHHHHHH
Q 046194 382 EGLKLGLDSDVSVSNALLSLYADAGYLS----RCLKVFFLMPEHDQVSWNSVIGAFADSE---------ALVSEAVKYYL 448 (934)
Q Consensus 382 ~~~~~g~~~~~~~~~~li~~y~~~g~~~----~A~~~f~~~~~~~~~~~~~li~~~~~~g---------~~~~~A~~l~~ 448 (934)
.+.+. .|+......+..+|.|.+.+. .|.++++..+++--..|+.+ +.+.+.- -++.-|.+.++
T Consensus 102 ~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~-Slilqs~~~~~~~~~~i~l~LA~~m~~ 178 (932)
T KOG2053|consen 102 RANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVI-SLILQSIFSENELLDPILLALAEKMVQ 178 (932)
T ss_pred HHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHH-HHHHHhccCCcccccchhHHHHHHHHH
Confidence 66543 344555556666666665554 35566665555444444432 2222211 11133444555
Q ss_pred HHHHcCCC-CCcccHHHHHHHHhccCCchHHHHHHHH-HHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccC
Q 046194 449 DMRRAGWS-PNGVTFINILAAASSFSMGKLGHQVHAQ-VIKYNVANETTIENALLSCYGKCGEMDDCEKIFARMSER 523 (934)
Q Consensus 449 ~m~~~g~~-p~~~t~~~ll~a~~~~~~~~~a~~i~~~-~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 523 (934)
.+.+.+.+ -+..-...-+......+..++|..++.. ....-..-+...-+--++.+.+++++.+-.++-.++..+
T Consensus 179 ~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k 255 (932)
T KOG2053|consen 179 KLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEK 255 (932)
T ss_pred HHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHh
Confidence 55544311 1111222233445567778888888744 333333445555567778888888888877777777665
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.057 Score=54.51 Aligned_cols=102 Identities=16% Similarity=0.106 Sum_probs=85.3
Q ss_pred CC-cccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc-cCCCcHHHHHHHHHHHhcCCCCCchHHH
Q 046194 696 PQ-LEQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCRA-NCRKTELGRKAANMLFEMEPQNAVNYVL 771 (934)
Q Consensus 696 p~-~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~-~~~~~~~a~~~~~~~~~~~p~~~~~y~~ 771 (934)
|+ .+.|-.|...|.+.|++++|..-|.+. .+.| ++.++..+..++... +.....++..++++++.++|.|......
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 44 889999999999999999999999887 4444 566777777766554 2245678899999999999999999999
Q ss_pred HHHHHHcCCChHHHHHHHHHHHhCCC
Q 046194 772 LANMYASGGKWEDVAKARKAMKEAEV 797 (934)
Q Consensus 772 l~~~~~~~g~~~~a~~~~~~m~~~~~ 797 (934)
|+-.+...|++.+|...++.|.+...
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp 258 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLP 258 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCC
Confidence 99999999999999999999987543
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.64 E-value=1.1 Score=46.76 Aligned_cols=245 Identities=13% Similarity=0.065 Sum_probs=107.2
Q ss_pred cCCHHHHHHHHHhhccCCCcch--HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HhHHHHHHHHHhchhhHHHHHHH
Q 046194 507 CGEMDDCEKIFARMSERRDEVS--WNSMISGYIHNELLPKAMNLVWFMMQRGQRLD-HFTFATVLSACASVATLERGMEV 583 (934)
Q Consensus 507 ~g~~~~A~~~~~~~~~~p~~~~--~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~i 583 (934)
.|+.++|.+-|+.|...|..-. ...|.-.--+.|..+-|...-.+.-. .-|. .......+...+..|+++.|+++
T Consensus 133 eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~--~Ap~l~WA~~AtLe~r~~~gdWd~AlkL 210 (531)
T COG3898 133 EGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAARHYAERAAE--KAPQLPWAARATLEARCAAGDWDGALKL 210 (531)
T ss_pred cCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHh--hccCCchHHHHHHHHHHhcCChHHHHHH
Confidence 4666666666666665432211 11111122335555555555444433 2232 24455566666666666666666
Q ss_pred HHHHHHh-CCCCcHhHHH--HHHHHHH---hcCCHHHHHHHhccCC--CCCccc-ccHHHHHHHHcCChHHHHHHHHHHH
Q 046194 584 HACGVRA-CLEFDVVIGS--ALVDMYS---KCGRIDYASRFFDLMP--VRNVYS-WNSMISGYARHGHGDKALTLFSQMK 654 (934)
Q Consensus 584 ~~~~~~~-~~~~~~~~~~--~li~~y~---~~g~~~~A~~~~~~~~--~~~~~~-~~~li~~~~~~g~~~~A~~l~~~m~ 654 (934)
.+..... -+.+++.--. .|+.+-+ -.-+...|...-.+.. .||.+- --.-..++.+.|+..++-.+++.+.
T Consensus 211 vd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aW 290 (531)
T COG3898 211 VDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAW 290 (531)
T ss_pred HHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHH
Confidence 6654432 2333322111 1111100 0112222222222221 234332 1222345566666666666666666
Q ss_pred HCCCCCChhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhhcCChHHHHHHHHhC-CCCCCHHH
Q 046194 655 LDGPLPDHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGRAGELDKIEEFINKM-PITPNSLI 732 (934)
Q Consensus 655 ~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p~~~~ 732 (934)
+....|+.- .+-...+.|+ .++.=++...+--.++|| .+..-.+..+-.-.|++..|..--+.. ...|...+
T Consensus 291 K~ePHP~ia----~lY~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres~ 364 (531)
T COG3898 291 KAEPHPDIA----LLYVRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRESA 364 (531)
T ss_pred hcCCChHHH----HHHHHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhhH
Confidence 654444421 1111223333 222222222222234454 444445555555566666555444443 34555555
Q ss_pred HHHHHHHHHhccCCCcHHHHHHHHHHHh
Q 046194 733 WRTVLGACCRANCRKTELGRKAANMLFE 760 (934)
Q Consensus 733 ~~~ll~~~~~~~~~~~~~a~~~~~~~~~ 760 (934)
|.-|...-.... ||..+.....-+.++
T Consensus 365 ~lLlAdIeeAet-GDqg~vR~wlAqav~ 391 (531)
T COG3898 365 YLLLADIEEAET-GDQGKVRQWLAQAVK 391 (531)
T ss_pred HHHHHHHHhhcc-CchHHHHHHHHHHhc
Confidence 555544333322 555555554444443
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.0062 Score=47.28 Aligned_cols=61 Identities=13% Similarity=0.219 Sum_probs=45.1
Q ss_pred HHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCC
Q 046194 704 MVDLLGRAGELDKIEEFINKM-PITPN-SLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNA 766 (934)
Q Consensus 704 li~~l~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 766 (934)
+...+.+.|++++|.+.|++. ...|+ ...|..+...+... |+++.|...++++++..|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~--g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQ--GRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHT--T-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHCcCCC
Confidence 355677788888888888877 55564 55777777777777 888888888888888888764
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.052 Score=49.62 Aligned_cols=88 Identities=7% Similarity=-0.059 Sum_probs=49.8
Q ss_pred cHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHH
Q 046194 631 NSMISGYARHGHGDKALTLFSQMKLDGPLPD-HVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLL 708 (934)
Q Consensus 631 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l 708 (934)
-.+..-+.+.|++++|..+|+-+.. +.|. ..-|..|..+|-..|++++|+..|..... +.|+ +..+-.+..++
T Consensus 39 Y~~A~~ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~---L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 39 YRYAMQLMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQ---IKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh---cCCCCchHHHHHHHHH
Confidence 3344445556666666666666655 3444 33344455555666666666666666644 3344 55555566666
Q ss_pred hhcCChHHHHHHHHh
Q 046194 709 GRAGELDKIEEFINK 723 (934)
Q Consensus 709 ~~~g~~~~A~~~~~~ 723 (934)
...|+.+.|.+-|+.
T Consensus 114 L~lG~~~~A~~aF~~ 128 (157)
T PRK15363 114 LACDNVCYAIKALKA 128 (157)
T ss_pred HHcCCHHHHHHHHHH
Confidence 666666666655544
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.023 Score=61.57 Aligned_cols=118 Identities=14% Similarity=0.047 Sum_probs=56.3
Q ss_pred CCCCcccHHHHHHHHhccCCchHHHHHHHHHHHh--cCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccC---CCcchH
Q 046194 455 WSPNGVTFINILAAASSFSMGKLGHQVHAQVIKY--NVANETTIENALLSCYGKCGEMDDCEKIFARMSER---RDEVSW 529 (934)
Q Consensus 455 ~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---p~~~~~ 529 (934)
.+.+...+..+++.+....+++.+..++-..... ....-+.+..++|..|.+.|..+.+..+++.=..- ||..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 3444555555555555555555555554444332 11112222235555555555555555554433332 455555
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHh
Q 046194 530 NSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACA 572 (934)
Q Consensus 530 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 572 (934)
|.|++.+.+.|++..|.++..+|...+...+..|+...+.+|.
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~ 184 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCY 184 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHH
Confidence 5555555555555555555555555444444444444444443
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.049 Score=61.71 Aligned_cols=132 Identities=14% Similarity=0.085 Sum_probs=95.4
Q ss_pred CCCChhhHHHHHHHHHhh-----CcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhhc--------CChHHHHHHHHh
Q 046194 658 PLPDHVTFVGVLSACSHA-----GLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGRA--------GELDKIEEFINK 723 (934)
Q Consensus 658 ~~p~~~t~~~ll~a~~~~-----g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~--------g~~~~A~~~~~~ 723 (934)
.+.|...|...+.+.... +..+.|..+|++..+ ..|+ ...|..+..++... ++++.+.+..++
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~---ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK---SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 455677888888875442 237789999999986 6788 45555554444322 223445555554
Q ss_pred C---C-CCCCHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 046194 724 M---P-ITPNSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMKEA 795 (934)
Q Consensus 724 m---~-~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~ 795 (934)
. + ...++.++.++.-..... |+.++|...++++++++| +...|..++.+|...|+.++|.+.+++....
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~--g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVK--GKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhc--CCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3 2 233456677765555566 999999999999999999 5789999999999999999999998877643
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0067 Score=48.43 Aligned_cols=56 Identities=13% Similarity=0.156 Sum_probs=48.6
Q ss_pred HHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 046194 738 GACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMKEA 795 (934)
Q Consensus 738 ~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~ 795 (934)
..+... ++++.|..+++.+++++|+++..+...+.+|...|++++|.+.++...+.
T Consensus 3 ~~~~~~--~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQ--EDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhC--CCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 345566 89999999999999999999999999999999999999999998887754
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.038 Score=59.93 Aligned_cols=120 Identities=15% Similarity=0.154 Sum_probs=74.2
Q ss_pred CCCCCHhHHHHHHHHHhchhhHHHHHHHHHHHHHh--CCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCC----CCCccc
Q 046194 556 GQRLDHFTFATVLSACASVATLERGMEVHACGVRA--CLEFDVVIGSALVDMYSKCGRIDYASRFFDLMP----VRNVYS 629 (934)
Q Consensus 556 g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~--~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~----~~~~~~ 629 (934)
+.+.+...+..+++.+.+..+++.+..++-..... ....-..+..++|..|.+.|..+.|..+++.=. -||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 34455666666666666666666666665555443 222223344467777777777777777666543 266667
Q ss_pred ccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhh
Q 046194 630 WNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHA 675 (934)
Q Consensus 630 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 675 (934)
+|.||..+.+.|++..|.++..+|..++...+..|+...+.+|.+-
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 7777777777777777777777776666666666665555555544
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.11 Score=54.37 Aligned_cols=118 Identities=15% Similarity=0.210 Sum_probs=74.9
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhh-CcHHHHHHHHHHhHHhhCCCCC----cccHHHHHHH
Q 046194 633 MISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHA-GLVDEGFKHFKSMSQVYGLIPQ----LEQFSCMVDL 707 (934)
Q Consensus 633 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~-g~~~~a~~~~~~m~~~~~~~p~----~~~y~~li~~ 707 (934)
.+..|...|++..|-..+.+ +...|... |++++|++.|++..+.|.-... ...+..+...
T Consensus 100 A~~~y~~~G~~~~aA~~~~~---------------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l 164 (282)
T PF14938_consen 100 AIEIYREAGRFSQAAKCLKE---------------LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADL 164 (282)
T ss_dssp HHHHHHHCT-HHHHHHHHHH---------------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHH---------------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHH
Confidence 34556666666665554444 44456666 8999999999988775433333 4566778899
Q ss_pred HhhcCChHHHHHHHHhCC---C-----CCCHH--HHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCch
Q 046194 708 LGRAGELDKIEEFINKMP---I-----TPNSL--IWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVN 768 (934)
Q Consensus 708 l~~~g~~~~A~~~~~~m~---~-----~p~~~--~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 768 (934)
+.+.|++++|.++|++.. . +.+.. .+.++| .+... ||...|...+++..+.+|.-..+
T Consensus 165 ~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l-~~L~~--~D~v~A~~~~~~~~~~~~~F~~s 232 (282)
T PF14938_consen 165 YARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAIL-CHLAM--GDYVAARKALERYCSQDPSFASS 232 (282)
T ss_dssp HHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHH-HHHHT--T-HHHHHHHHHHHGTTSTTSTTS
T ss_pred HHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHH-HHHHc--CCHHHHHHHHHHHHhhCCCCCCc
Confidence 999999999999998861 1 11221 122222 22233 89999999999999999865443
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.046 Score=48.08 Aligned_cols=91 Identities=12% Similarity=0.103 Sum_probs=66.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHh
Q 046194 633 MISGYARHGHGDKALTLFSQMKLDGPLPD--HVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLG 709 (934)
Q Consensus 633 li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~ 709 (934)
+..++-..|+.++|+.+|++..+.|.... ...+..+.+++...|++++|..+|+.....+.-.+. ......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 45567788999999999999999886655 345667778899999999999999988875322111 122223445778
Q ss_pred hcCChHHHHHHHHh
Q 046194 710 RAGELDKIEEFINK 723 (934)
Q Consensus 710 ~~g~~~~A~~~~~~ 723 (934)
..|+.++|++.+-.
T Consensus 87 ~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 87 NLGRPKEALEWLLE 100 (120)
T ss_pred HCCCHHHHHHHHHH
Confidence 88999999877644
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.065 Score=51.34 Aligned_cols=117 Identities=20% Similarity=0.195 Sum_probs=71.6
Q ss_pred CCHhHHHHHHHHHh-----chhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCCCCcccccHH
Q 046194 559 LDHFTFATVLSACA-----SVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPVRNVYSWNSM 633 (934)
Q Consensus 559 p~~~t~~~ll~a~~-----~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~l 633 (934)
.|..+|..++..+. +.|.++-....+..|.+.|++-|..+|+.|++.+=| |.+- -..+|+.+
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~----------- 111 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAE----------- 111 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHH-----------
Confidence 34444444444443 234555555667777778888888888888877665 3221 11111111
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCc-HHHHHHHHHHhHH
Q 046194 634 ISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGL-VDEGFKHFKSMSQ 690 (934)
Q Consensus 634 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~-~~~a~~~~~~m~~ 690 (934)
-.- ...+-+-|++++++|...|+-||..|+..|+..+.+.+. +.+..++.-.|.+
T Consensus 112 F~h--yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmpk 167 (228)
T PF06239_consen 112 FMH--YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMPK 167 (228)
T ss_pred hcc--CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 001 123456799999999999999999999999998877664 3334444444444
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.36 E-value=2.4 Score=47.52 Aligned_cols=50 Identities=12% Similarity=0.037 Sum_probs=25.6
Q ss_pred HHhhccCChhHHHHHHhcCCCC-----CcccHHHHHHHHHhCCChhHHHHHHHHH
Q 046194 299 NMYAKCGTIDDSRSVFRFMIGK-----DSVSWNTMISGLDQNGCYEEAIMNFCAM 348 (934)
Q Consensus 299 ~~~~~~g~~~~A~~~f~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m 348 (934)
.++.+.|++-...++++.-... -...|+.+...++....+++|.+.|..-
T Consensus 768 elr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~ 822 (1189)
T KOG2041|consen 768 ELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYC 822 (1189)
T ss_pred HHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455555555555555432111 1235666666666666666666655543
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.0074 Score=49.77 Aligned_cols=80 Identities=14% Similarity=0.248 Sum_probs=56.2
Q ss_pred cCChHHHHHHHHHHHHCCCC-CChhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhhcCChHHH
Q 046194 640 HGHGDKALTLFSQMKLDGPL-PDHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGRAGELDKI 717 (934)
Q Consensus 640 ~g~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A 717 (934)
.|+++.|+.+|+++.+.... |+...+..+..++.+.|++++|..+++. . ...|. ....-.+..+|.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~---~~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L---KLDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H---THHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h---CCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 57889999999999885321 2344455577888899999999999888 2 22333 34444557888899999999
Q ss_pred HHHHHh
Q 046194 718 EEFINK 723 (934)
Q Consensus 718 ~~~~~~ 723 (934)
++.+++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 888865
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.27 Score=49.90 Aligned_cols=71 Identities=11% Similarity=0.059 Sum_probs=45.6
Q ss_pred HHHHHHhcCCHHHHHHHHHhhccC-CCcch----HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHH
Q 046194 500 LLSCYGKCGEMDDCEKIFARMSER-RDEVS----WNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSA 570 (934)
Q Consensus 500 li~~~~~~g~~~~A~~~~~~~~~~-p~~~~----~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 570 (934)
....+.+.|++++|.+.|+.+... |+... .-.+..+|.+.+++++|...|++..+.-..-...-+...+.+
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g 113 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRG 113 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHH
Confidence 344456678899999999888775 43321 123556778888999999999888875332223344444443
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.005 Score=48.34 Aligned_cols=62 Identities=19% Similarity=0.306 Sum_probs=40.5
Q ss_pred HhhCcHHHHHHHHHHhHHhhCCCC-CcccHHHHHHHHhhcCChHHHHHHHHhC-CCCCCHHHHHHHH
Q 046194 673 SHAGLVDEGFKHFKSMSQVYGLIP-QLEQFSCMVDLLGRAGELDKIEEFINKM-PITPNSLIWRTVL 737 (934)
Q Consensus 673 ~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll 737 (934)
...|++++|+++|+.+... .| +...+..++.+|.+.|++++|.++++++ ...|+...|..++
T Consensus 2 l~~~~~~~A~~~~~~~l~~---~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~ 65 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQR---NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLL 65 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHH---TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 3567778888888777663 34 4666667777777777777777777777 4556654444443
|
... |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.39 Score=44.59 Aligned_cols=142 Identities=12% Similarity=0.128 Sum_probs=100.1
Q ss_pred ChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCC-CcccHHHHHHHHhhcCChHHHHHH
Q 046194 642 HGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIP-QLEQFSCMVDLLGRAGELDKIEEF 720 (934)
Q Consensus 642 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~li~~l~~~g~~~~A~~~ 720 (934)
++++.+.-..+-.+ +.|....-..|..+....|+..||...|++... |+-. |....-.+.++....++..+|...
T Consensus 71 dP~R~~Rea~~~~~--~ApTvqnr~rLa~al~elGr~~EA~~hy~qals--G~fA~d~a~lLglA~Aqfa~~~~A~a~~t 146 (251)
T COG4700 71 DPERHLREATEELA--IAPTVQNRYRLANALAELGRYHEAVPHYQQALS--GIFAHDAAMLLGLAQAQFAIQEFAAAQQT 146 (251)
T ss_pred ChhHHHHHHHHHHh--hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc--cccCCCHHHHHHHHHHHHhhccHHHHHHH
Confidence 44444433333333 467766667788888889999999999888877 5543 466666777788888889898888
Q ss_pred HHhC-C-----CCCCHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHH
Q 046194 721 INKM-P-----ITPNSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAM 792 (934)
Q Consensus 721 ~~~m-~-----~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m 792 (934)
+++. . -.||. --.+...+... |..+.|+.+++.++..-|. +..-...+..+.++|+.++|..-...+
T Consensus 147 Le~l~e~~pa~r~pd~--~Ll~aR~laa~--g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 147 LEDLMEYNPAFRSPDG--HLLFARTLAAQ--GKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHhhcCCccCCCCc--hHHHHHHHHhc--CCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 8876 2 23443 23445566666 8999999999999988875 566667778899999888876544443
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.44 Score=52.55 Aligned_cols=243 Identities=10% Similarity=0.046 Sum_probs=122.7
Q ss_pred CccchhHHHHHHHhcCChHHHHHHHHHhhhcccchhhhhhhhhhhhhHHHHHHHHHcCCCchhHHHHHHHHhhccCChhH
Q 046194 230 DLYVGSALVSGFARLGNFYYARKIFEQMIQKNVVSMNGLMEGRRKGKEVHGYLIRSGLFDMVAVGNGLVNMYAKCGTIDD 309 (934)
Q Consensus 230 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 309 (934)
....|.-|.......=+++-|++.+.+.... .|-.++..+ ....+.|-.|+.... ...++-.|++.+
T Consensus 584 v~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl---~~L~li~EL-------~~~k~rge~P~~iLl---A~~~Ay~gKF~E 650 (1081)
T KOG1538|consen 584 TDTDWRELAMEALEALDFETARKAYIRVRDL---RYLELISEL-------EERKKRGETPNDLLL---ADVFAYQGKFHE 650 (1081)
T ss_pred ecchHHHHHHHHHhhhhhHHHHHHHHHHhcc---HHHHHHHHH-------HHHHhcCCCchHHHH---HHHHHhhhhHHH
Confidence 3444555555555566666666666655432 111111111 112344555665543 345566788888
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCchHHHHHHHHHHhhhCCC
Q 046194 310 SRSVFRFMIGKDSVSWNTMISGLDQNGCYEEAIMNFCAMRRDGLMSSNFSLISTLSSCASLGWIMLGQQIHGEGLKLGLD 389 (934)
Q Consensus 310 A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~ 389 (934)
|.++|. ++|....|+++|..|+--. ..+-+...|+.++-+.+...-.+. .
T Consensus 651 AAklFk------------------~~G~enRAlEmyTDlRMFD----------~aQE~~~~g~~~eKKmL~RKRA~W--A 700 (1081)
T KOG1538|consen 651 AAKLFK------------------RSGHENRALEMYTDLRMFD----------YAQEFLGSGDPKEKKMLIRKRADW--A 700 (1081)
T ss_pred HHHHHH------------------HcCchhhHHHHHHHHHHHH----------HHHHHhhcCChHHHHHHHHHHHHH--h
Confidence 888775 4566677777777665311 112222333333333332221111 1
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCccchHHHHHHHHhCCccHHHHHHHHHHHHHcCCCCCcccHHHHHHHH
Q 046194 390 SDVSVSNALLSLYADAGYLSRCLKVFFLMPEHDQVSWNSVIGAFADSEALVSEAVKYYLDMRRAGWSPNGVTFINILAAA 469 (934)
Q Consensus 390 ~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 469 (934)
.|+.--.+...++...|+.++|..+.-+ +|-. +-+.++-+++- ..+..+...+..-+
T Consensus 701 r~~kePkaAAEmLiSaGe~~KAi~i~~d------------------~gW~-d~lidI~rkld----~~ere~l~~~a~yl 757 (1081)
T KOG1538|consen 701 RNIKEPKAAAEMLISAGEHVKAIEICGD------------------HGWV-DMLIDIARKLD----KAEREPLLLCATYL 757 (1081)
T ss_pred hhcCCcHHHHHHhhcccchhhhhhhhhc------------------ccHH-HHHHHHHhhcc----hhhhhHHHHHHHHH
Confidence 1111112334555566666666554321 2222 33333333222 22334444444555
Q ss_pred hccCCchHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccC-CCcchHHHHHHHHHhcCChhHHHHH
Q 046194 470 SSFSMGKLGHQVHAQVIKYNVANETTIENALLSCYGKCGEMDDCEKIFARMSER-RDEVSWNSMISGYIHNELLPKAMNL 548 (934)
Q Consensus 470 ~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~l 548 (934)
-+...+..|-++|..+-.. .+++++....+++++|..+-++.++- ||+ |..-..-++...++++|.+.
T Consensus 758 k~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~~~dV--y~pyaqwLAE~DrFeEAqkA 826 (1081)
T KOG1538|consen 758 KKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEFKDDV--YMPYAQWLAENDRFEEAQKA 826 (1081)
T ss_pred hhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccccccc--cchHHHHhhhhhhHHHHHHH
Confidence 5666677777777665433 46788888899999999988888774 333 22223334445555555443
Q ss_pred H
Q 046194 549 V 549 (934)
Q Consensus 549 ~ 549 (934)
|
T Consensus 827 f 827 (1081)
T KOG1538|consen 827 F 827 (1081)
T ss_pred H
Confidence 3
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.025 Score=58.45 Aligned_cols=128 Identities=10% Similarity=0.006 Sum_probs=91.5
Q ss_pred hHHHHHHHHHhhCcHHHHHHHHHH---hHHhhCCCCC-cccHHHHHHHHhhcCChHHHHHHHHhC-------C-CCCCHH
Q 046194 664 TFVGVLSACSHAGLVDEGFKHFKS---MSQVYGLIPQ-LEQFSCMVDLLGRAGELDKIEEFINKM-------P-ITPNSL 731 (934)
Q Consensus 664 t~~~ll~a~~~~g~~~~a~~~~~~---m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m-------~-~~p~~~ 731 (934)
.|..|...|.-.|+++.|+...+. +.++||-... ...++.+..++.-.|+++.|.+.++.. + -.....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 355555555667889999877654 3344555444 567888999999999999999988764 2 122345
Q ss_pred HHHHHHHHHHhccCCCcHHHHHHHHHHHhc----C--CCCCchHHHHHHHHHcCCChHHHHHHHHHHH
Q 046194 732 IWRTVLGACCRANCRKTELGRKAANMLFEM----E--PQNAVNYVLLANMYASGGKWEDVAKARKAMK 793 (934)
Q Consensus 732 ~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~----~--p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~ 793 (934)
.--+|...|... .+++.|+.+..+-+.+ + ......+..|++.|...|..+.|..+.+.-.
T Consensus 277 scYSLgNtytll--~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 277 SCYSLGNTYTLL--KEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHhhhHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 566788888887 8888888887764333 2 2345678999999999999999988766544
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.075 Score=55.41 Aligned_cols=62 Identities=15% Similarity=0.117 Sum_probs=32.0
Q ss_pred CcHhHHHHHHHHHHhcCCHHHHHHHhccCCC--C----CcccccHHHHHHHHcCChHHHHHHHHHHHH
Q 046194 594 FDVVIGSALVDMYSKCGRIDYASRFFDLMPV--R----NVYSWNSMISGYARHGHGDKALTLFSQMKL 655 (934)
Q Consensus 594 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 655 (934)
.+...+...++.+.+.++.+.|+.+|++... + -...|...+.-=.+.|+.+.+..+.+++.+
T Consensus 68 ~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 68 SDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp T-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455555556666666666666666665442 1 112455555555555555555555555555
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.011 Score=46.58 Aligned_cols=63 Identities=14% Similarity=0.238 Sum_probs=42.1
Q ss_pred ccHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhccCC-CcHHHHHHHHHHHhcCC
Q 046194 699 EQFSCMVDLLGRAGELDKIEEFINKM-PITPN-SLIWRTVLGACCRANCR-KTELGRKAANMLFEMEP 763 (934)
Q Consensus 699 ~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~-~~~~a~~~~~~~~~~~p 763 (934)
..|..+...+.+.|++++|+..|++. ...|+ +.+|..+..++... | +.++|...++++++++|
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~--~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKL--GKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHT--TTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh--CccHHHHHHHHHHHHHcCc
Confidence 44556666666677777777666665 44453 45666666666666 7 67788888888877776
|
... |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=95.96 E-value=2.9 Score=44.75 Aligned_cols=453 Identities=11% Similarity=0.070 Sum_probs=235.3
Q ss_pred HHhcCChHHHHHHHHHhhhcccchhhhhhhhhhhhhHHHHHHHHHcCCCchhHHHHHHHHhhccCChhHHHHHHhcCCCC
Q 046194 241 FARLGNFYYARKIFEQMIQKNVVSMNGLMEGRRKGKEVHGYLIRSGLFDMVAVGNGLVNMYAKCGTIDDSRSVFRFMIGK 320 (934)
Q Consensus 241 ~~~~g~~~~A~~l~~~m~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~ 320 (934)
+-+.+++.+|+++|.++...-..+- .+.. .....+.++++|.-. +++..........+.
T Consensus 16 Lqkq~~~~esEkifskI~~e~~~~~-----------f~lk---------eEvl~grilnAffl~-nld~Me~~l~~l~~~ 74 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKESSP-----------FLLK---------EEVLGGRILNAFFLN-NLDLMEKQLMELRQQ 74 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhcch-----------HHHH---------HHHHhhHHHHHHHHh-hHHHHHHHHHHHHHh
Confidence 4578899999999998864321110 0000 122334556666432 333333333333221
Q ss_pred -CcccHHHHHHHH--HhCCChhHHHHHHHHHHHC--CCCC------------ChhhHHHHHHHhhccCchHHHHHHHHHH
Q 046194 321 -DSVSWNTMISGL--DQNGCYEEAIMNFCAMRRD--GLMS------------SNFSLISTLSSCASLGWIMLGQQIHGEG 383 (934)
Q Consensus 321 -~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~--g~~p------------~~~t~~~ll~a~~~~~~~~~a~~i~~~~ 383 (934)
....|-.+..++ -+.+.+.+|++.+..-... +-.| |-.-=.....+....|.+.+|+.++..+
T Consensus 75 ~~~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i 154 (549)
T PF07079_consen 75 FGKSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRI 154 (549)
T ss_pred cCCchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHH
Confidence 133455555554 3678889999888776654 3222 1111233445667888999999888877
Q ss_pred hhhCC----CCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCccchHHHHHHHHhCCccHHHHHHHHHHHHHcCCCCCc
Q 046194 384 LKLGL----DSDVSVSNALLSLYADAGYLSRCLKVFFLMPEHDQVSWNSVIGAFADSEALVSEAVKYYLDMRRAGWSPNG 459 (934)
Q Consensus 384 ~~~g~----~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~ 459 (934)
...=+ ..+..+|+.++-++++.=-++- -+.+...=..-|--||..|.+.=.. ++.-.=..+-|..
T Consensus 155 ~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl----~e~~s~dl~pdyYemilfY~kki~~-------~d~~~Y~k~~pee 223 (549)
T PF07079_consen 155 IERLLKRECEWNSDMYDRAVLMLSRSYFLEL----KESMSSDLYPDYYEMILFYLKKIHA-------FDQRPYEKFIPEE 223 (549)
T ss_pred HHHHhhhhhcccHHHHHHHHHHHhHHHHHHH----HHhcccccChHHHHHHHHHHHHHHH-------HhhchHHhhCcHH
Confidence 65543 4788888888877766422111 1111111112244444444322111 1100001233444
Q ss_pred ccHHHHHHHHhcc--CCchHHHHHHHHHHHhcCCCchh-HHHHHHHHHHhcCCHHHHHHHHHhhc--------cCCCcch
Q 046194 460 VTFINILAAASSF--SMGKLGHQVHAQVIKYNVANETT-IENALLSCYGKCGEMDDCEKIFARMS--------ERRDEVS 528 (934)
Q Consensus 460 ~t~~~ll~a~~~~--~~~~~a~~i~~~~~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~--------~~p~~~~ 528 (934)
..+..++....-. ..+..-.+++..-.+.-+.|+-. +...|++-+.+ +.+++..+.+.+. ++ -+.+
T Consensus 224 eL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~-li~~ 300 (549)
T PF07079_consen 224 ELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEE-LIDR 300 (549)
T ss_pred HHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHH-HHHH
Confidence 4444444433222 22333344444444555555433 34455555554 4444444433332 22 4556
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHH-------HHHHHHh-ch---hhHHHHHHHHHHHHHhCCCCcHh
Q 046194 529 WNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFA-------TVLSACA-SV---ATLERGMEVHACGVRACLEFDVV 597 (934)
Q Consensus 529 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~-------~ll~a~~-~~---~~~~~a~~i~~~~~~~~~~~~~~ 597 (934)
+..++...++.++..+|-+.+.-+.. ..|+...-. .+-+..+ .- .++..-..+++.+....++...-
T Consensus 301 F~~~Ls~~Vk~~~T~~a~q~l~lL~~--ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQL 378 (549)
T PF07079_consen 301 FGNLLSFKVKQVQTEEAKQYLALLKI--LDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQL 378 (549)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHh--cCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHH
Confidence 78888888888888888887766654 233322111 1111111 11 12222233444444433332111
Q ss_pred H-H-HHHHHHHHhcCC-HHHHHHHhccCCC---CCcccccHHH----HHHHH---cCChHHHHHHHHHHHHCCCCCChhh
Q 046194 598 I-G-SALVDMYSKCGR-IDYASRFFDLMPV---RNVYSWNSMI----SGYAR---HGHGDKALTLFSQMKLDGPLPDHVT 664 (934)
Q Consensus 598 ~-~-~~li~~y~~~g~-~~~A~~~~~~~~~---~~~~~~~~li----~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t 664 (934)
+ | .--..-|.+.|. -+.|.++++.+.+ -|..+-|... .+|.+ .....+-+.+-+-..+.|+.|-.+.
T Consensus 379 vh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~ 458 (549)
T PF07079_consen 379 VHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITIS 458 (549)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCccccc
Confidence 1 1 111233445555 6778888877652 3444333322 12222 1223444455555667788875443
Q ss_pred ----HHHHHHH--HHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHH
Q 046194 665 ----FVGVLSA--CSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKMPITPNSLIWRT 735 (934)
Q Consensus 665 ----~~~ll~a--~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~~~p~~~~~~~ 735 (934)
-+.|..| +...|++.++..+-.... .+.|++.+|..++-++....+++||.+++.+.| |+..+|++
T Consensus 459 e~eian~LaDAEyLysqgey~kc~~ys~WL~---~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP--~n~~~~ds 530 (549)
T PF07079_consen 459 EEEIANFLADAEYLYSQGEYHKCYLYSSWLT---KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP--PNERMRDS 530 (549)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHH---HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC--CchhhHHH
Confidence 3334443 456789998887655554 488999999999999999999999999999974 56666554
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.68 Score=43.03 Aligned_cols=113 Identities=11% Similarity=0.082 Sum_probs=52.2
Q ss_pred HHHHHHHhcCCHHHHHHHhccCCC----CCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCC---hhhHHHHHHHHH
Q 046194 601 ALVDMYSKCGRIDYASRFFDLMPV----RNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPD---HVTFVGVLSACS 673 (934)
Q Consensus 601 ~li~~y~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~---~~t~~~ll~a~~ 673 (934)
.|.......|+..+|...|++... .|....-.+..+....+++..|..+++.+.+.. |+ ..+...+...+.
T Consensus 94 rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~--pa~r~pd~~Ll~aR~la 171 (251)
T COG4700 94 RLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN--PAFRSPDGHLLFARTLA 171 (251)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC--CccCCCCchHHHHHHHH
Confidence 344444444444444444444321 222233333344444455555555555555431 22 112333444555
Q ss_pred hhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHH
Q 046194 674 HAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIE 718 (934)
Q Consensus 674 ~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~ 718 (934)
..|...+|..-|+.... .-|+...-......+.+.|+.++|.
T Consensus 172 a~g~~a~Aesafe~a~~---~ypg~~ar~~Y~e~La~qgr~~ea~ 213 (251)
T COG4700 172 AQGKYADAESAFEVAIS---YYPGPQARIYYAEMLAKQGRLREAN 213 (251)
T ss_pred hcCCchhHHHHHHHHHH---hCCCHHHHHHHHHHHHHhcchhHHH
Confidence 56666666666665554 2244444344445555666555554
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.1 Score=45.86 Aligned_cols=83 Identities=11% Similarity=-0.017 Sum_probs=50.6
Q ss_pred HHHhhcCChHHHHHHHHhC---CCCCC--HHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCC---CCchHHHHHHHHH
Q 046194 706 DLLGRAGELDKIEEFINKM---PITPN--SLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQ---NAVNYVLLANMYA 777 (934)
Q Consensus 706 ~~l~~~g~~~~A~~~~~~m---~~~p~--~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~---~~~~y~~l~~~~~ 777 (934)
.++-..|+.++|..++++. +..+. ...+-.+.+.++.. |+.++|..+++...+-.|+ +......++-++.
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~L--G~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNL--GRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 3444555555555555544 22221 22444566666666 7777777777777776666 5555666777777
Q ss_pred cCCChHHHHHHHH
Q 046194 778 SGGKWEDVAKARK 790 (934)
Q Consensus 778 ~~g~~~~a~~~~~ 790 (934)
..|++++|.+.+-
T Consensus 87 ~~gr~~eAl~~~l 99 (120)
T PF12688_consen 87 NLGRPKEALEWLL 99 (120)
T ss_pred HCCCHHHHHHHHH
Confidence 8888888776643
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.054 Score=55.41 Aligned_cols=57 Identities=12% Similarity=0.238 Sum_probs=28.5
Q ss_pred HHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCc----ccHHHHHHHHhhcCChHHHHHHHHhC
Q 046194 665 FVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQL----EQFSCMVDLLGRAGELDKIEEFINKM 724 (934)
Q Consensus 665 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~----~~y~~li~~l~~~g~~~~A~~~~~~m 724 (934)
|...+......|++++|...|+.+.+.| |+. ..+-.+..+|...|++++|...|+++
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~y---P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~v 206 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKY---PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASV 206 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHC---cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4433333344566666666666666543 331 23444445555555555555554444
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.77 Score=45.16 Aligned_cols=138 Identities=12% Similarity=0.021 Sum_probs=101.3
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhchhhHHHHHHHHHHHHHhC-----CCCcHhHHHH
Q 046194 527 VSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVATLERGMEVHACGVRAC-----LEFDVVIGSA 601 (934)
Q Consensus 527 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~-----~~~~~~~~~~ 601 (934)
...+.++..+.-.+.+.-.+.++++.++...+-+......+.+.--+.|+.+.|...++.+.+.. +.....+...
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 34456677777788888888999998887666677777888888888999999999999776643 3333444444
Q ss_pred HHHHHHhcCCHHHHHHHhccCCC---CCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHH
Q 046194 602 LVDMYSKCGRIDYASRFFDLMPV---RNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFV 666 (934)
Q Consensus 602 li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 666 (934)
....|.-..++..|...|++++. .|++.-|.-.-+....|+..+|++..+.|.+. -|...+-.
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~e 323 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHE 323 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhh
Confidence 44556677888888888887764 45666777666777788999999999999884 45544433
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.11 Score=49.84 Aligned_cols=87 Identities=9% Similarity=0.070 Sum_probs=65.8
Q ss_pred CcchHHHHHHHHHh-----cCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhc----------------hhhHHHHHHH
Q 046194 525 DEVSWNSMISGYIH-----NELLPKAMNLVWFMMQRGQRLDHFTFATVLSACAS----------------VATLERGMEV 583 (934)
Q Consensus 525 ~~~~~~~li~~~~~-----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----------------~~~~~~a~~i 583 (934)
|..+|..+|..|.+ .|..+=....++.|.+-|+.-|..+|+.||+.+-+ ..+-+-|.++
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~l 125 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDL 125 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHH
Confidence 66667777766654 35666667777888888888888888888887643 1245678888
Q ss_pred HHHHHHhCCCCcHhHHHHHHHHHHhcCC
Q 046194 584 HACGVRACLEFDVVIGSALVDMYSKCGR 611 (934)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~li~~y~~~g~ 611 (934)
+++|...|+.||..++..|++.+++.+.
T Consensus 126 L~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 126 LEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 9999999999999999988888876654
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.086 Score=53.94 Aligned_cols=91 Identities=16% Similarity=0.190 Sum_probs=53.9
Q ss_pred ccHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh----hhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHH
Q 046194 630 WNSMISGYARHGHGDKALTLFSQMKLDGPLPDH----VTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCM 704 (934)
Q Consensus 630 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~l 704 (934)
|...+..+.+.|++++|+..|+.+.+. .|+. ..+..+..++...|++++|...|+.+.+.|.-.|. ...+-.+
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 344444445567888888888888874 4554 35556777788888888888888888775432222 2223333
Q ss_pred HHHHhhcCChHHHHHHHH
Q 046194 705 VDLLGRAGELDKIEEFIN 722 (934)
Q Consensus 705 i~~l~~~g~~~~A~~~~~ 722 (934)
+..+...|+.++|.+.++
T Consensus 224 g~~~~~~g~~~~A~~~~~ 241 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQ 241 (263)
T ss_pred HHHHHHcCCHHHHHHHHH
Confidence 333434444444444433
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.051 Score=58.38 Aligned_cols=63 Identities=10% Similarity=-0.066 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCch---HHHHHHHHHcCCChHHHHHHHHHHHh
Q 046194 730 SLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVN---YVLLANMYASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 730 ~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~---y~~l~~~~~~~g~~~~a~~~~~~m~~ 794 (934)
...|..+..++... |++++|...++++++++|+++.. |..++.+|...|+.++|.+.+++..+
T Consensus 75 a~a~~NLG~AL~~l--GryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 75 AEDAVNLGLSLFSK--GRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred HHHHHHHHHHHHHc--CCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44556666666655 66666666666666666665533 56666666666666666655555544
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.16 Score=53.43 Aligned_cols=82 Identities=13% Similarity=0.205 Sum_probs=69.8
Q ss_pred HHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHHhCCCcCCCceeEEEeCCE
Q 046194 732 IWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMKEAEVKKEAGCSWVTMKDG 811 (934)
Q Consensus 732 ~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~ 811 (934)
.+..|...+.+. +++..|.....++++++|+|.-....-+.+|...|+++.|...++++.+
T Consensus 259 ~~lNlA~c~lKl--~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k----------------- 319 (397)
T KOG0543|consen 259 CHLNLAACYLKL--KEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALK----------------- 319 (397)
T ss_pred HhhHHHHHHHhh--hhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHH-----------------
Confidence 456666666777 8999999999999999999999999999999999999999999998874
Q ss_pred EEEEEcCCCCCCChHHHHHHHHHHHHHHHH
Q 046194 812 VHVFVAGDESHPEKDLIYEKLKELNQKMRD 841 (934)
Q Consensus 812 ~~~f~~~~~~~~~~~~~~~~l~~l~~~m~~ 841 (934)
..|.+..+..+|..|.+++++
T Consensus 320 ---------~~P~Nka~~~el~~l~~k~~~ 340 (397)
T KOG0543|consen 320 ---------LEPSNKAARAELIKLKQKIRE 340 (397)
T ss_pred ---------hCCCcHHHHHHHHHHHHHHHH
Confidence 467778888888888777765
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=95.33 E-value=1.3 Score=44.97 Aligned_cols=67 Identities=9% Similarity=-0.118 Sum_probs=43.5
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhH--HHHHHHHHhchhhHHHHHHHHHHHHHhC
Q 046194 525 DEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFT--FATVLSACASVATLERGMEVHACGVRAC 591 (934)
Q Consensus 525 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t--~~~ll~a~~~~~~~~~a~~i~~~~~~~~ 591 (934)
+...+-.....+.+.|++++|.+.|+++...-..+.... .-.+..++-+.++++.|...++..++..
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 99 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 333344455566778999999999999988532222111 1234456677788888888888777753
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.29 E-value=7.7 Score=44.99 Aligned_cols=67 Identities=12% Similarity=0.103 Sum_probs=40.3
Q ss_pred CChHHHHHHh-hccCCCCcccHHHHHHHHHcCCCchHHHHHHHHHHHccCCCCCCCCceeHHHHHHHHhcCccccc
Q 046194 138 ESTDCARRIF-EEIETRDLISWNSIISVYSQRGDTISVFKLFSRMQREGFRYSLKPNEYTFGSLITAAYSSVLSGS 212 (934)
Q Consensus 138 g~~~~a~~~f-~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~p~~~t~~~ll~a~~~~~~~~~ 212 (934)
|++++|...+ +.+..-+ =..+|.-|.......+--..++.+.+.|. .+..--..||.++.+.++.+.
T Consensus 382 gdf~~A~~qYI~tI~~le---~s~Vi~kfLdaq~IknLt~YLe~L~~~gl-----a~~dhttlLLncYiKlkd~~k 449 (933)
T KOG2114|consen 382 GDFDEATDQYIETIGFLE---PSEVIKKFLDAQRIKNLTSYLEALHKKGL-----ANSDHTTLLLNCYIKLKDVEK 449 (933)
T ss_pred CCHHHHHHHHHHHcccCC---hHHHHHHhcCHHHHHHHHHHHHHHHHccc-----ccchhHHHHHHHHHHhcchHH
Confidence 7777776655 3332211 12355556666666666677777777774 455555667777777776554
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.025 Score=39.67 Aligned_cols=42 Identities=14% Similarity=0.294 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHH
Q 046194 731 LIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLAN 774 (934)
Q Consensus 731 ~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~ 774 (934)
.+|..+..++... |+.+.|++.++++++.+|+|+..+..|+.
T Consensus 2 ~~~~~la~~~~~~--G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRL--GQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHc--CCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 3577888888888 99999999999999999999888877764
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.11 E-value=4 Score=40.69 Aligned_cols=193 Identities=19% Similarity=0.158 Sum_probs=110.5
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHhccCC-----CCCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 046194 596 VVIGSALVDMYSKCGRIDYASRFFDLMP-----VRNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLS 670 (934)
Q Consensus 596 ~~~~~~li~~y~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 670 (934)
..........+...+.+..+...+.... ......+..+...+...++...++..+.........+. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHH
Confidence 3444455555566666666665555433 12233444555555566666677777766665332221 11222222
Q ss_pred -HHHhhCcHHHHHHHHHHhHHhhCCCC----CcccHHHHHHHHhhcCChHHHHHHHHhC-CCCCC--HHHHHHHHHHHHh
Q 046194 671 -ACSHAGLVDEGFKHFKSMSQVYGLIP----QLEQFSCMVDLLGRAGELDKIEEFINKM-PITPN--SLIWRTVLGACCR 742 (934)
Q Consensus 671 -a~~~~g~~~~a~~~~~~m~~~~~~~p----~~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p~--~~~~~~ll~~~~~ 742 (934)
.+...|.++++...|..... ..| ....+......+...++.++|...+.+. ...|+ ...+..+...+..
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (291)
T COG0457 138 GALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLK 214 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHH
Confidence 56667777777777776633 222 1233333334455667777777777665 33333 4566666666666
Q ss_pred ccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHHh
Q 046194 743 ANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 743 ~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 794 (934)
. ++.+.+...+..+.+..|.....+..++..+...|.++++...+.....
T Consensus 215 ~--~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 215 L--GKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred c--ccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6 6777777777777777777555666666666666667777766555543
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.26 Score=43.86 Aligned_cols=51 Identities=20% Similarity=0.339 Sum_probs=40.0
Q ss_pred CCCCCcccHHHHHHHHhhcCChHHHHHHHHhC----CCCCCHHHHHHHHHHHHhc
Q 046194 693 GLIPQLEQFSCMVDLLGRAGELDKIEEFINKM----PITPNSLIWRTVLGACCRA 743 (934)
Q Consensus 693 ~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m----~~~p~~~~~~~ll~~~~~~ 743 (934)
.+.|+.....+++.+|+..|++..|+++++.. +++-+..+|..|+.=+...
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVL 101 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 45577788888888888888888888887765 6666688888888866665
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.03 E-value=8.5 Score=44.06 Aligned_cols=124 Identities=11% Similarity=0.141 Sum_probs=85.8
Q ss_pred HHHHHHHHHC-CCCCChhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhCC
Q 046194 647 LTLFSQMKLD-GPLPDHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKMP 725 (934)
Q Consensus 647 ~~l~~~m~~~-g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~ 725 (934)
+.+++.+..+ |..-...|.+--+.-+...|...+|.++-.+. .+ ||...|-.=+.+++..++|++-+++-+++.
T Consensus 668 l~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~F----ki-pdKr~~wLk~~aLa~~~kweeLekfAkskk 742 (829)
T KOG2280|consen 668 LKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDF----KI-PDKRLWWLKLTALADIKKWEELEKFAKSKK 742 (829)
T ss_pred HHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhc----CC-cchhhHHHHHHHHHhhhhHHHHHHHHhccC
Confidence 3444444332 33344556666677777888888888775444 22 787778777888888899988888887762
Q ss_pred CCCCHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHH
Q 046194 726 ITPNSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKA 788 (934)
Q Consensus 726 ~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~ 788 (934)
. +.-|.-+..+|... |+.++|.+++-+.-.+. -.+.+|.+.|++.+|.+.
T Consensus 743 s---PIGy~PFVe~c~~~--~n~~EA~KYiprv~~l~--------ekv~ay~~~~~~~eAad~ 792 (829)
T KOG2280|consen 743 S---PIGYLPFVEACLKQ--GNKDEAKKYIPRVGGLQ--------EKVKAYLRVGDVKEAADL 792 (829)
T ss_pred C---CCCchhHHHHHHhc--ccHHHHhhhhhccCChH--------HHHHHHHHhccHHHHHHH
Confidence 1 34455577788888 88888888776653332 567888888999988776
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.079 Score=42.10 Aligned_cols=63 Identities=10% Similarity=0.226 Sum_probs=43.2
Q ss_pred HHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHH
Q 046194 706 DLLGRAGELDKIEEFINKM-PITPN-SLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYV 770 (934)
Q Consensus 706 ~~l~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~ 770 (934)
..|.+.+++++|.+.++.+ ...|+ +..|......+... |+++.|...++.+++..|+++....
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~--g~~~~A~~~l~~~l~~~p~~~~~~~ 67 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQL--GRYEEALEDLERALELSPDDPDARA 67 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHh--ccHHHHHHHHHHHHHHCCCcHHHHH
Confidence 4566777777777777776 45554 44555555566666 8888888888888888887655443
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=94.78 E-value=1.9 Score=37.77 Aligned_cols=140 Identities=15% Similarity=0.139 Sum_probs=85.8
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHH
Q 046194 638 ARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKI 717 (934)
Q Consensus 638 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A 717 (934)
.-.|..++..++..+...+ .+..-++-+|.-...+-+-+-..+.++++-+-|.+.|-. ..-.++.+|.+.|...|
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~-NlKrVi~C~~~~n~~se- 87 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCG-NLKRVIECYAKRNKLSE- 87 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S--THHHHHHHHHTT---H-
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCchhhc-chHHHHHHHHHhcchHH-
Confidence 3467788888888887763 234445555555555566666777777776654443321 12334555555554433
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHHhCCC
Q 046194 718 EEFINKMPITPNSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMKEAEV 797 (934)
Q Consensus 718 ~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 797 (934)
....-+.+.... |.-+.-.+.+..+.+-+..+|....-++++|.+.|...++.+++++.-++|+
T Consensus 88 --------------~vD~ALd~lv~~--~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 88 --------------YVDLALDILVKQ--GKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp --------------HHHHHHHHHHHT--T-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred --------------HHHHHHHHHHHh--ccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 233445666667 8888888899888887778899999999999999999999999999988887
Q ss_pred c
Q 046194 798 K 798 (934)
Q Consensus 798 ~ 798 (934)
+
T Consensus 152 k 152 (161)
T PF09205_consen 152 K 152 (161)
T ss_dssp H
T ss_pred H
Confidence 4
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=94.67 E-value=1 Score=44.46 Aligned_cols=55 Identities=11% Similarity=0.122 Sum_probs=37.4
Q ss_pred HHHHHhcCCHHHHHHHHHhhccC-CCc----chHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 046194 501 LSCYGKCGEMDDCEKIFARMSER-RDE----VSWNSMISGYIHNELLPKAMNLVWFMMQR 555 (934)
Q Consensus 501 i~~~~~~g~~~~A~~~~~~~~~~-p~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 555 (934)
...+...|++++|.+.|+.+..+ |+. .+.-.++.++-+.|++++|...|++.+..
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34456678888888888888764 321 23445667788888888888888887764
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.44 Score=44.16 Aligned_cols=106 Identities=15% Similarity=0.201 Sum_probs=70.9
Q ss_pred HHhhCcHHHHHHHHHHhHHhhCCC--CCcccHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhccCCCcH
Q 046194 672 CSHAGLVDEGFKHFKSMSQVYGLI--PQLEQFSCMVDLLGRAGELDKIEEFINKMPITPNSLIWRTVLGACCRANCRKTE 749 (934)
Q Consensus 672 ~~~~g~~~~a~~~~~~m~~~~~~~--p~~~~y~~li~~l~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~~ 749 (934)
....|+.+.+...++.+..-|.=. |+... ........+.++++ -..+...++..+... |+.+
T Consensus 16 ~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~----------~~W~~~~r~~l~~~----~~~~~~~l~~~~~~~--~~~~ 79 (146)
T PF03704_consen 16 AARAGDPEEAIELLEEALALYRGDFLPDLDD----------EEWVEPERERLREL----YLDALERLAEALLEA--GDYE 79 (146)
T ss_dssp HHHTT-HHHHHHHHHHHHTT--SSTTGGGTT----------STTHHHHHHHHHHH----HHHHHHHHHHHHHHT--T-HH
T ss_pred HHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc----------cHHHHHHHHHHHHH----HHHHHHHHHHHHHhc--cCHH
Confidence 355677788888877777654211 11111 11222223333332 123455677777778 9999
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHH
Q 046194 750 LGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMK 793 (934)
Q Consensus 750 ~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~ 793 (934)
.+...++.++..+|-+...|..+..+|...|+..+|.++++.+.
T Consensus 80 ~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 80 EALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988775
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.48 E-value=0.95 Score=44.54 Aligned_cols=135 Identities=12% Similarity=0.055 Sum_probs=86.8
Q ss_pred cccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHH----
Q 046194 629 SWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCM---- 704 (934)
Q Consensus 629 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~l---- 704 (934)
.-++++..+.-+|.+.-.+.++++.++...+-+......|.+.-.+.|+.+.|..+|+...+..+ ..+....+.+
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~-kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQ-KLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHh-hhhccchhHHHHhh
Confidence 44567777777888888999999998865455566677777778889999999999998776422 2333333333
Q ss_pred -HHHHhhcCChHHHHHHHHhCCC-CCCHHHH---HHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCch
Q 046194 705 -VDLLGRAGELDKIEEFINKMPI-TPNSLIW---RTVLGACCRANCRKTELGRKAANMLFEMEPQNAVN 768 (934)
Q Consensus 705 -i~~l~~~g~~~~A~~~~~~m~~-~p~~~~~---~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 768 (934)
...+.-++++.+|...+.+.+. .|...++ .+|...|. |+...|.+..+.+.+..|....+
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYl----g~l~DAiK~~e~~~~~~P~~~l~ 322 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYL----GKLKDALKQLEAMVQQDPRHYLH 322 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHH----HHHHHHHHHHHHHhccCCccchh
Confidence 3344556677777777766632 2222222 22333332 67777777777777777764443
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=94.40 E-value=8.8 Score=41.32 Aligned_cols=74 Identities=16% Similarity=0.191 Sum_probs=57.7
Q ss_pred HHHHHhCCCCC----CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHH
Q 046194 718 EEFINKMPITP----NSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAM 792 (934)
Q Consensus 718 ~~~~~~m~~~p----~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m 792 (934)
..++++.++.| +..+-|-|..|=.-..+|++.++.-...-+.++.| .+.+|-++|-.+....++++|...+..+
T Consensus 444 e~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 444 EDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 44566666666 34456666665433222999999999999999999 8999999999999999999999987655
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.34 E-value=13 Score=42.96 Aligned_cols=75 Identities=12% Similarity=0.175 Sum_probs=49.9
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhhCCCCCccchHHHHHHHHhCCccHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhc
Q 046194 393 SVSNALLSLYADAGYLSRCLKVFFLMPEHDQVSWNSVIGAFADSEALVSEAVKYYLDMRRAGWSPNGVTFINILAAASS 471 (934)
Q Consensus 393 ~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 471 (934)
.++..+|+.+.-.|++++|-...-.|...+..-|.--+..+...++. .....+ +....-+.+...|..+|..+..
T Consensus 393 kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l-~~Ia~~---lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 393 KVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQL-TDIAPY---LPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred HHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhcccccc-chhhcc---CCCCCcccCchHHHHHHHHHHH
Confidence 45667788888889999999988888888888888777777777665 333222 1111122344556666666555
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=94.25 E-value=0.11 Score=41.83 Aligned_cols=60 Identities=15% Similarity=0.288 Sum_probs=28.8
Q ss_pred hHHHHHHHHHhhCcHHHHHHHHHHhHHhh---CC-CCC-cccHHHHHHHHhhcCChHHHHHHHHh
Q 046194 664 TFVGVLSACSHAGLVDEGFKHFKSMSQVY---GL-IPQ-LEQFSCMVDLLGRAGELDKIEEFINK 723 (934)
Q Consensus 664 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~-~p~-~~~y~~li~~l~~~g~~~~A~~~~~~ 723 (934)
++..+...+...|++++|+.+|++..+.. |- .|+ ..++..|..++.+.|++++|++++++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~ 71 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQK 71 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34455555556666666666655554321 10 011 33444555555555555555555543
|
... |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=94.08 E-value=1.9 Score=42.44 Aligned_cols=60 Identities=8% Similarity=-0.040 Sum_probs=38.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCC--CHhHHHHHHHHHhchhhHHHHHHHHHHHHHh
Q 046194 531 SMISGYIHNELLPKAMNLVWFMMQRGQRL--DHFTFATVLSACASVATLERGMEVHACGVRA 590 (934)
Q Consensus 531 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p--~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~ 590 (934)
.....+.+.|++++|.+.|+++...-... -......+..++-+.|+++.|...++..++.
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34455677899999999999988752211 1234445566677777777777777776664
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=94.01 E-value=7.2 Score=47.07 Aligned_cols=157 Identities=18% Similarity=0.172 Sum_probs=95.5
Q ss_pred CCHHHHHHHHHhhccCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhchhhHHHHHHHHHHH
Q 046194 508 GEMDDCEKIFARMSERRDEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVATLERGMEVHACG 587 (934)
Q Consensus 508 g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~ 587 (934)
+++++|..-+.++. ...|.-.+.---++|.+.+|+.+ .+|+...+..+..+|++. +
T Consensus 894 ~ry~~AL~hLs~~~----~~~~~e~~n~I~kh~Ly~~aL~l--------y~~~~e~~k~i~~~ya~h------------L 949 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG----ETYFPECKNYIKKHGLYDEALAL--------YKPDSEKQKVIYEAYADH------------L 949 (1265)
T ss_pred HHHHHHHHHHHHcC----ccccHHHHHHHHhcccchhhhhe--------eccCHHHHHHHHHHHHHH------------H
Confidence 44555555555443 22344444444456666666665 356666666655554431 1
Q ss_pred HHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCCCCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhh--H
Q 046194 588 VRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPVRNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVT--F 665 (934)
Q Consensus 588 ~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t--~ 665 (934)
.+. ..++--.-+|.++|+.++|.+ +|...|+|.+|+.+..+|.. .-|... -
T Consensus 950 ~~~------~~~~~Aal~Ye~~GklekAl~------------------a~~~~~dWr~~l~~a~ql~~---~~de~~~~a 1002 (1265)
T KOG1920|consen 950 REE------LMSDEAALMYERCGKLEKALK------------------AYKECGDWREALSLAAQLSE---GKDELVILA 1002 (1265)
T ss_pred HHh------ccccHHHHHHHHhccHHHHHH------------------HHHHhccHHHHHHHHHhhcC---CHHHHHHHH
Confidence 111 111223346788888888865 45567899999998888753 223222 2
Q ss_pred HHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhC
Q 046194 666 VGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKM 724 (934)
Q Consensus 666 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m 724 (934)
..|.+-+...++.-+|-++..+...+ +.--+..|+++-.|++|..+....
T Consensus 1003 ~~L~s~L~e~~kh~eAa~il~e~~sd---------~~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1003 EELVSRLVEQRKHYEAAKILLEYLSD---------PEEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred HHHHHHHHHcccchhHHHHHHHHhcC---------HHHHHHHHhhHhHHHHHHHHHHhc
Confidence 45667788888888888887666543 344577888888899998877665
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.00 E-value=7.1 Score=38.79 Aligned_cols=162 Identities=12% Similarity=0.097 Sum_probs=106.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHhccCCC--CCc-ccccHHHH-HHHHcCChHHHHHHHHHHHHCCCCC----ChhhHHHH
Q 046194 597 VIGSALVDMYSKCGRIDYASRFFDLMPV--RNV-YSWNSMIS-GYARHGHGDKALTLFSQMKLDGPLP----DHVTFVGV 668 (934)
Q Consensus 597 ~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~-~~~~~li~-~~~~~g~~~~A~~l~~~m~~~g~~p----~~~t~~~l 668 (934)
..+..+...+...+....+.+.+..... ++. ..+..... .+...|+++.|...|.+... ..| ....+...
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~ 173 (291)
T COG0457 96 EALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALE--LDPELNELAEALLAL 173 (291)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHh
Confidence 3333444444455555555555554442 111 12222222 67788888888888888855 333 23334444
Q ss_pred HHHHHhhCcHHHHHHHHHHhHHhhCCCC-CcccHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhccC
Q 046194 669 LSACSHAGLVDEGFKHFKSMSQVYGLIP-QLEQFSCMVDLLGRAGELDKIEEFINKM-PITPN-SLIWRTVLGACCRANC 745 (934)
Q Consensus 669 l~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~ 745 (934)
...+...++.+++...+...... ... ....+..+...+...|.+++|...+... ...|+ ...+..+...+...
T Consensus 174 ~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 249 (291)
T COG0457 174 GALLEALGRYEEALELLEKALKL--NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLEL-- 249 (291)
T ss_pred hhHHHHhcCHHHHHHHHHHHHhh--CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHc--
Confidence 44466788899999998888763 333 3677888888888899999999888877 44554 55666666666644
Q ss_pred CCcHHHHHHHHHHHhcCCC
Q 046194 746 RKTELGRKAANMLFEMEPQ 764 (934)
Q Consensus 746 ~~~~~a~~~~~~~~~~~p~ 764 (934)
++.+.+....++..+..|.
T Consensus 250 ~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 250 GRYEEALEALEKALELDPD 268 (291)
T ss_pred CCHHHHHHHHHHHHHhCcc
Confidence 7789999999999999887
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=93.95 E-value=1.8 Score=47.00 Aligned_cols=141 Identities=11% Similarity=0.110 Sum_probs=89.9
Q ss_pred hHHHHHHHHHHHH-CCCCCCh-hhHHHHHHHHHh---------hCcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhh
Q 046194 643 GDKALTLFSQMKL-DGPLPDH-VTFVGVLSACSH---------AGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGR 710 (934)
Q Consensus 643 ~~~A~~l~~~m~~-~g~~p~~-~t~~~ll~a~~~---------~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~ 710 (934)
.+.|+.+|.+... +.+.|+- ..|..+..++.. .....+|.+.-+...+ +.|+ +.....+..++.-
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAve---ld~~Da~a~~~~g~~~~~ 350 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSD---ITTVDGKILAIMGLITGL 350 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHh
Confidence 4578888888872 2356763 333333222111 2234556666555554 3443 6667777777788
Q ss_pred cCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHH--HHHcCCChHHHH
Q 046194 711 AGELDKIEEFINKM-PITPN-SLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLAN--MYASGGKWEDVA 786 (934)
Q Consensus 711 ~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~--~~~~~g~~~~a~ 786 (934)
.|+++.|..+|++. .+.|| +.+|......+... |+.++|....+++++++|.....-+.--+ .|+.. ..++|.
T Consensus 351 ~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~--G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~ 427 (458)
T PRK11906 351 SGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHN--EKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNI 427 (458)
T ss_pred hcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhhhH
Confidence 88899999999887 56776 44566666666666 99999999999999999987655444333 44444 456666
Q ss_pred HHH
Q 046194 787 KAR 789 (934)
Q Consensus 787 ~~~ 789 (934)
+++
T Consensus 428 ~~~ 430 (458)
T PRK11906 428 KLY 430 (458)
T ss_pred HHH
Confidence 553
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=93.91 E-value=0.32 Score=43.27 Aligned_cols=97 Identities=12% Similarity=0.176 Sum_probs=70.5
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHhccCCCCCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 046194 595 DVVIGSALVDMYSKCGRIDYASRFFDLMPVRNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSH 674 (934)
Q Consensus 595 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 674 (934)
|..++.++|-++++.|+++....+.+..-..|+. +-...+. --......|+..+..+++.+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~-------~~~~~~~---------~~~~spl~Pt~~lL~AIv~sf~~ 64 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVN-------GKKKEGD---------YPPSSPLYPTSRLLIAIVHSFGY 64 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCC-------CccccCc---------cCCCCCCCCCHHHHHHHHHHHHh
Confidence 3456777888888888888888877654322211 0000000 11234478999999999999999
Q ss_pred hCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHH
Q 046194 675 AGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDL 707 (934)
Q Consensus 675 ~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~ 707 (934)
.|++..|+++.+...+.|+++-+...|..|+.-
T Consensus 65 n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 65 NGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred cccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 999999999999999999988888888888763
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.87 E-value=1.2 Score=45.30 Aligned_cols=102 Identities=13% Similarity=0.123 Sum_probs=71.9
Q ss_pred ChhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhhcC---ChHHHHHHHHhC-CCCCCHHH-HH
Q 046194 661 DHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGRAG---ELDKIEEFINKM-PITPNSLI-WR 734 (934)
Q Consensus 661 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g---~~~~A~~~~~~m-~~~p~~~~-~~ 734 (934)
|...|..|..+|...|+.+.|..-|....+ +.|+ +..+..+..++.... ...++.++|+++ ...|+.+. ..
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r---L~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALR---LAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 467788888888888888888888888765 3333 666666666554332 455778888887 66665554 44
Q ss_pred HHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCc
Q 046194 735 TVLGACCRANCRKTELGRKAANMLFEMEPQNAV 767 (934)
Q Consensus 735 ~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 767 (934)
-|.-.+... |++.+|...++++++..|.+..
T Consensus 232 lLA~~afe~--g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 232 LLAFAAFEQ--GDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHHHHHc--ccHHHHHHHHHHHHhcCCCCCc
Confidence 444466666 8999999999999888887754
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.82 E-value=6.2 Score=41.85 Aligned_cols=146 Identities=10% Similarity=0.095 Sum_probs=74.4
Q ss_pred HHHcCChHHHHHHHHHHHHC---CCCCChhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhhcC
Q 046194 637 YARHGHGDKALTLFSQMKLD---GPLPDHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGRAG 712 (934)
Q Consensus 637 ~~~~g~~~~A~~l~~~m~~~---g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g 712 (934)
..+.|++.+|.+.|.+.+.. +++|+...|.....+..+.|+.++|+.--+...+ +.|. +..|-.-..++.-.+
T Consensus 259 ~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~---iD~syikall~ra~c~l~le 335 (486)
T KOG0550|consen 259 AFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK---IDSSYIKALLRRANCHLALE 335 (486)
T ss_pred HhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh---cCHHHHHHHHHHHHHHHHHH
Confidence 34567777777777776652 2233334455555556667777777766555433 3333 233333334444456
Q ss_pred ChHHHHHHHHhC-CCCCC---H---------------HHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCch-----
Q 046194 713 ELDKIEEFINKM-PITPN---S---------------LIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVN----- 768 (934)
Q Consensus 713 ~~~~A~~~~~~m-~~~p~---~---------------~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~----- 768 (934)
.|++|.+-+++. ...-+ . ..|-.+++.-+.. .+.+......+.++...|+-...
T Consensus 336 ~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLkkSkRkd~ykilGi~~~a--s~~eikkayrk~AL~~Hpd~~agsq~ea 413 (486)
T KOG0550|consen 336 KWEEAVEDYEKAMQLEKDCEIRRTLREAQLALKKSKRKDWYKILGISRNA--SDDEIKKAYRKLALVHHPDKNAGSQKEA 413 (486)
T ss_pred HHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhhhhhHHHHhhhhhhc--ccchhhhHHHHHHHHhCCCcCcchhHHH
Confidence 677777666654 11111 1 1233333333333 44444444555566666653322
Q ss_pred ---HHHHHHHHHcCCChHHHHH
Q 046194 769 ---YVLLANMYASGGKWEDVAK 787 (934)
Q Consensus 769 ---y~~l~~~~~~~g~~~~a~~ 787 (934)
+...+..|...++..++.+
T Consensus 414 E~kFkevgeAy~il~d~~kr~r 435 (486)
T KOG0550|consen 414 EAKFKEVGEAYTILSDPMKRVR 435 (486)
T ss_pred HHHHHHHHHHHHHhcCHHHHhh
Confidence 3455556666665555544
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=93.62 E-value=0.7 Score=50.02 Aligned_cols=115 Identities=10% Similarity=-0.005 Sum_probs=87.2
Q ss_pred cHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhh---------cCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcc
Q 046194 677 LVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGR---------AGELDKIEEFINKM-PITP-NSLIWRTVLGACCRAN 744 (934)
Q Consensus 677 ~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~---------~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~ 744 (934)
..+.|..+|.+......+.|+ ...|..+..++.. .....+|.++.++. .+.| |+.....+..+....
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~- 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLS- 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhh-
Confidence 456788889888854467787 5566655554432 22445667777666 4444 566666666666677
Q ss_pred CCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHH
Q 046194 745 CRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMK 793 (934)
Q Consensus 745 ~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~ 793 (934)
++.+.|...++++..++|+.+..|...+++..-.|+.++|.+..++..
T Consensus 352 -~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~al 399 (458)
T PRK11906 352 -GQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSL 399 (458)
T ss_pred -cchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 889999999999999999999999999999999999999998877643
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=93.45 E-value=0.11 Score=42.04 Aligned_cols=60 Identities=12% Similarity=0.143 Sum_probs=36.1
Q ss_pred HHHHHHHHHHhccCCCcHHHHHHHHHHHhcC-------CCCCchHHHHHHHHHcCCChHHHHHHHHHHH
Q 046194 732 IWRTVLGACCRANCRKTELGRKAANMLFEME-------PQNAVNYVLLANMYASGGKWEDVAKARKAMK 793 (934)
Q Consensus 732 ~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~-------p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~ 793 (934)
+++.+...+... |++++|...+++++++. |.-...+..++.+|...|++++|.+.+++..
T Consensus 7 ~~~~la~~~~~~--~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYREL--GRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHT--T-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344444444444 55555555555444331 1124567888889999999999988877654
|
... |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.40 E-value=0.64 Score=40.40 Aligned_cols=88 Identities=17% Similarity=0.171 Sum_probs=61.1
Q ss_pred HHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCC----CchHHHHHHHHHcCC
Q 046194 707 LLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQN----AVNYVLLANMYASGG 780 (934)
Q Consensus 707 ~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~----~~~y~~l~~~~~~~g 780 (934)
+++..|+++.|++.|.+. .+-| .+..||.-..+++.. |+.+.|..-.++++++.-+. -..|+.-+.+|...|
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq--~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQ--GDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHc--CChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 556667777777777665 3333 456777777777777 77888877777777775332 234778888888888
Q ss_pred ChHHHHHHHHHHHhCC
Q 046194 781 KWEDVAKARKAMKEAE 796 (934)
Q Consensus 781 ~~~~a~~~~~~m~~~~ 796 (934)
+-++|..-|+...+-|
T Consensus 130 ~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLG 145 (175)
T ss_pred chHHHHHhHHHHHHhC
Confidence 8888887777665543
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=93.39 E-value=0.39 Score=44.50 Aligned_cols=68 Identities=16% Similarity=0.233 Sum_probs=40.6
Q ss_pred cHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHHHHHHHHhHH----hhCCCCCcc
Q 046194 631 NSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGFKHFKSMSQ----VYGLIPQLE 699 (934)
Q Consensus 631 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~----~~~~~p~~~ 699 (934)
..++..+...|++++|+.+.+++.... +-|...+..++.++...|+..+|.+.|+.+.+ ++|+.|+..
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~ 137 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPE 137 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHH
Confidence 345556666777777777777777742 33466677777777777777777777776543 356666644
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=93.34 E-value=2.2 Score=39.06 Aligned_cols=125 Identities=20% Similarity=0.294 Sum_probs=69.5
Q ss_pred HHHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCCCCcccccHHHHHHHHcCChH
Q 046194 565 ATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPVRNVYSWNSMISGYARHGHGD 644 (934)
Q Consensus 565 ~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 644 (934)
..++..+.+.+.......+++.+.+.+ ..+....|.++..|++.. .+
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~--------------------------------~~ 57 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD--------------------------------PQ 57 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC--------------------------------HH
Confidence 344555555555566666666555544 234555555555555432 22
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhc-CChHHHHHHHHh
Q 046194 645 KALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRA-GELDKIEEFINK 723 (934)
Q Consensus 645 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~-g~~~~A~~~~~~ 723 (934)
+.++.++. .++......++..|.+.+.++++.-++..+.. |...++.+... ++.+.|.+++.+
T Consensus 58 ~ll~~l~~------~~~~yd~~~~~~~c~~~~l~~~~~~l~~k~~~----------~~~Al~~~l~~~~d~~~a~~~~~~ 121 (140)
T smart00299 58 KEIERLDN------KSNHYDIEKVGKLCEKAKLYEEAVELYKKDGN----------FKDAIVTLIEHLGNYEKAIEYFVK 121 (140)
T ss_pred HHHHHHHh------ccccCCHHHHHHHHHHcCcHHHHHHHHHhhcC----------HHHHHHHHHHcccCHHHHHHHHHh
Confidence 33333332 23344455567777777777777777766533 23334444444 777778777776
Q ss_pred CCCCCCHHHHHHHHHHHH
Q 046194 724 MPITPNSLIWRTVLGACC 741 (934)
Q Consensus 724 m~~~p~~~~~~~ll~~~~ 741 (934)
- .+...|..++..|.
T Consensus 122 ~---~~~~lw~~~~~~~l 136 (140)
T smart00299 122 Q---NNPELWAEVLKALL 136 (140)
T ss_pred C---CCHHHHHHHHHHHH
Confidence 3 25557777776664
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=92.71 E-value=13 Score=38.62 Aligned_cols=61 Identities=8% Similarity=-0.008 Sum_probs=27.8
Q ss_pred HHHHHHHhcCCHHHHHHHhccCCC-C--CcccccHHHHHHHH--cCChHHHHHHHHHHHHCCCCCC
Q 046194 601 ALVDMYSKCGRIDYASRFFDLMPV-R--NVYSWNSMISGYAR--HGHGDKALTLFSQMKLDGPLPD 661 (934)
Q Consensus 601 ~li~~y~~~g~~~~A~~~~~~~~~-~--~~~~~~~li~~~~~--~g~~~~A~~l~~~m~~~g~~p~ 661 (934)
.-++.+.+.++.+.+.+++.+|.. . ....+..++..+.. ......|...+.++....+.|.
T Consensus 126 L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~ 191 (278)
T PF08631_consen 126 LKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQLAEKSPELAAFCLDYLLLNRFKSS 191 (278)
T ss_pred HHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCC
Confidence 334444556666666666666542 1 12234444443311 1223445555555544434444
|
It is also involved in sporulation []. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=92.66 E-value=0.42 Score=51.58 Aligned_cols=60 Identities=13% Similarity=0.114 Sum_probs=37.7
Q ss_pred hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcc----cHHHHHHHHhhcCChHHHHHHHHhC
Q 046194 662 HVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLE----QFSCMVDLLGRAGELDKIEEFINKM 724 (934)
Q Consensus 662 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~----~y~~li~~l~~~g~~~~A~~~~~~m 724 (934)
...++.+..+|.+.|++++|+..|+...+ +.|+.. .|..+..+|...|++++|++.+++.
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALe---L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrA 138 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALE---LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTA 138 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44566666666777777777777766654 445522 3666666666666666666666654
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=92.59 E-value=21 Score=40.09 Aligned_cols=183 Identities=12% Similarity=0.053 Sum_probs=122.6
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHhccCCCC---CcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 046194 595 DVVIGSALVDMYSKCGRIDYASRFFDLMPVR---NVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSA 671 (934)
Q Consensus 595 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 671 (934)
+..+|...++.-.+.|+.+.+.-+|+....| =...|--.+.-....|+.+-|-.++....+-..+-...+-..-..-
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 5677777788888888888888888877643 1224544454445558888888777776654322222222222223
Q ss_pred HHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhhcCChHHHH---HHHHhC-CCCCCHHHHH-------HHHHH
Q 046194 672 CSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGRAGELDKIE---EFINKM-PITPNSLIWR-------TVLGA 739 (934)
Q Consensus 672 ~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~---~~~~~m-~~~p~~~~~~-------~ll~~ 739 (934)
+...|+.+.|..+++.+.++ . |+ +..-.-=+....|.|+.+.+. +++... +..-+..+.. -+...
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~ 452 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYK 452 (577)
T ss_pred HHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHH
Confidence 67788999999999999986 3 66 333334466778889999888 555544 2222222222 22222
Q ss_pred HHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHH
Q 046194 740 CCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWED 784 (934)
Q Consensus 740 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~ 784 (934)
+ . ++.+.|..+...+.+..|++-..|..+.++....+-..+
T Consensus 453 i--~--~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~e 493 (577)
T KOG1258|consen 453 I--R--EDADLARIILLEANDILPDCKVLYLELIRFELIQPSGRE 493 (577)
T ss_pred H--h--cCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCcchh
Confidence 2 2 789999999999999999999999999998887774444
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.46 E-value=3 Score=42.72 Aligned_cols=47 Identities=9% Similarity=-0.028 Sum_probs=21.5
Q ss_pred cCCHHHHHHHhccCCC---CCcccccHHHHHHHHcCChHHHHHHHHHHHH
Q 046194 609 CGRIDYASRFFDLMPV---RNVYSWNSMISGYARHGHGDKALTLFSQMKL 655 (934)
Q Consensus 609 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 655 (934)
.|...+|-..++++.+ .|..+|+--=.+|...|+.+.-...+++..-
T Consensus 116 ~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip 165 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP 165 (491)
T ss_pred cccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhcc
Confidence 3444444444444332 2444444444455555555555555555443
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=92.34 E-value=28 Score=40.93 Aligned_cols=43 Identities=23% Similarity=0.136 Sum_probs=25.5
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhcc
Q 046194 327 TMISGLDQNGCYEEAIMNFCAMRRDGLMSSNFSLISTLSSCASL 370 (934)
Q Consensus 327 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 370 (934)
.+|-.+.+.|++++|.++..+... ........|...+..+...
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~-~~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRN-QFQKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGG-GS-TTTTHHHHHHHHCTTT
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhh-hhcchhHHHHHHHHHHHhC
Confidence 455666777777777777744443 3455556666677766554
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.34 E-value=6.3 Score=41.60 Aligned_cols=52 Identities=8% Similarity=0.054 Sum_probs=32.1
Q ss_pred HHHhCCccHHHHHHHHHHHHHcCCC---CCcccHHHHHHHHhccCCchHHHHHHHH
Q 046194 432 AFADSEALVSEAVKYYLDMRRAGWS---PNGVTFINILAAASSFSMGKLGHQVHAQ 484 (934)
Q Consensus 432 ~~~~~g~~~~~A~~l~~~m~~~g~~---p~~~t~~~ll~a~~~~~~~~~a~~i~~~ 484 (934)
-+++.|+. ...+.+|+..++.|-. .=+..|..|-+++.-+++++.|.+.|..
T Consensus 26 RLck~gdc-raGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~h 80 (639)
T KOG1130|consen 26 RLCKMGDC-RAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTH 80 (639)
T ss_pred HHHhccch-hhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhh
Confidence 46777887 8888888877776532 1122344455556666667777766543
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=92.29 E-value=7.6 Score=42.48 Aligned_cols=55 Identities=9% Similarity=-0.000 Sum_probs=26.9
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCC-C-hhhHHHHHHHHHhhCcHHHHHHHHHHh
Q 046194 633 MISGYARHGHGDKALTLFSQMKLDGPLP-D-HVTFVGVLSACSHAGLVDEGFKHFKSM 688 (934)
Q Consensus 633 li~~~~~~g~~~~A~~l~~~m~~~g~~p-~-~~t~~~ll~a~~~~g~~~~a~~~~~~m 688 (934)
+..+..+.|+.++|++.|++|.+.. ++ | ......|+.++...+.+.++..++.+.
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~-p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEF-PNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhC-CccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 4444445555556666655555432 11 1 123344555555555555555555444
|
The molecular function of this protein is uncertain. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=92.19 E-value=1.9 Score=47.91 Aligned_cols=131 Identities=16% Similarity=0.212 Sum_probs=85.9
Q ss_pred HHHcCChHHHHHHHH--HHHHCCCCCChhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCCh
Q 046194 637 YARHGHGDKALTLFS--QMKLDGPLPDHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGEL 714 (934)
Q Consensus 637 ~~~~g~~~~A~~l~~--~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~ 714 (934)
....|+++++.+..+ ++.. .+ | ..-...+++-+.+.|..+.|+++-..-..+ .++-.+.|++
T Consensus 271 av~~~d~~~v~~~i~~~~ll~-~i-~-~~~~~~i~~fL~~~G~~e~AL~~~~D~~~r-------------FeLAl~lg~L 334 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLP-NI-P-KDQGQSIARFLEKKGYPELALQFVTDPDHR-------------FELALQLGNL 334 (443)
T ss_dssp HHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS-HHHH-------------HHHHHHCT-H
T ss_pred HHHcCChhhhhhhhhhhhhcc-cC-C-hhHHHHHHHHHHHCCCHHHHHhhcCChHHH-------------hHHHHhcCCH
Confidence 345677777766654 1111 12 2 333667777788899999998875444332 4667789999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHHh
Q 046194 715 DKIEEFINKMPITPNSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 715 ~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 794 (934)
+.|.+..++. ++...|..|....... |+++.|+.++++.. -+..|.-+|...|+-+.-.++-+....
T Consensus 335 ~~A~~~a~~~---~~~~~W~~Lg~~AL~~--g~~~lAe~c~~k~~--------d~~~L~lLy~~~g~~~~L~kl~~~a~~ 401 (443)
T PF04053_consen 335 DIALEIAKEL---DDPEKWKQLGDEALRQ--GNIELAEECYQKAK--------DFSGLLLLYSSTGDREKLSKLAKIAEE 401 (443)
T ss_dssp HHHHHHCCCC---STHHHHHHHHHHHHHT--TBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhc---CcHHHHHHHHHHHHHc--CCHHHHHHHHHhhc--------CccccHHHHHHhCCHHHHHHHHHHHHH
Confidence 9999887765 3777999999999988 99999999998873 456788888888888777777665554
Q ss_pred CC
Q 046194 795 AE 796 (934)
Q Consensus 795 ~~ 796 (934)
+|
T Consensus 402 ~~ 403 (443)
T PF04053_consen 402 RG 403 (443)
T ss_dssp TT
T ss_pred cc
Confidence 43
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.12 E-value=3.1 Score=42.23 Aligned_cols=119 Identities=14% Similarity=0.102 Sum_probs=83.3
Q ss_pred HHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHH---HHHHHhccCCC
Q 046194 671 ACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKMPITPNSLIWRTV---LGACCRANCRK 747 (934)
Q Consensus 671 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~~~p~~~~~~~l---l~~~~~~~~~~ 747 (934)
.....|+..+|...|...... ..-+...--.|..+|...|+.++|..++..+|.+-...-|..| +....+. .+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qa--a~ 218 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQA--AA 218 (304)
T ss_pred hhhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHH--hc
Confidence 456778888888888888763 2233566777888999999999999999998655444444331 1222222 22
Q ss_pred cHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHHh
Q 046194 748 TELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 748 ~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 794 (934)
... ....+.-..-+|+|...-..|+..|...|+.++|.+.+-.+.+
T Consensus 219 ~~~-~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 219 TPE-IQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred CCC-HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 211 1244556677899999999999999999999999887666554
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.11 E-value=5 Score=40.01 Aligned_cols=166 Identities=15% Similarity=0.135 Sum_probs=87.4
Q ss_pred HhcCCHHHHHHHHHhhccC-C-C---cchHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCCHhHHHHHHHHHhc---h-
Q 046194 505 GKCGEMDDCEKIFARMSER-R-D---EVSWNSMISGYIHNELLPKAMNLVWFMMQRG-QRLDHFTFATVLSACAS---V- 574 (934)
Q Consensus 505 ~~~g~~~~A~~~~~~~~~~-p-~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~---~- 574 (934)
.+.|++++|.+.|+.+..+ | + ..+--.++-++-+.+++++|+..+++....- -.|| .-|..-|.+.+. .
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n-~dY~~YlkgLs~~~~i~ 123 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN-ADYAYYLKGLSYFFQID 123 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC-hhHHHHHHHHHHhccCC
Confidence 4678999999999998876 3 2 2234445667788999999999998877643 2333 333333443331 1
Q ss_pred ---hhHH---HHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCCCCccc-c-cHHHHHHHHcCChHHH
Q 046194 575 ---ATLE---RGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPVRNVYS-W-NSMISGYARHGHGDKA 646 (934)
Q Consensus 575 ---~~~~---~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~-~-~~li~~~~~~g~~~~A 646 (934)
.+.. .|..-++.++.. ++.+..+ .+|......+. |... + -.+..-|.+.|.+..|
T Consensus 124 ~~~rDq~~~~~A~~~f~~~i~r-yPnS~Ya--------------~dA~~~i~~~~--d~LA~~Em~IaryY~kr~~~~AA 186 (254)
T COG4105 124 DVTRDQSAARAAFAAFKELVQR-YPNSRYA--------------PDAKARIVKLN--DALAGHEMAIARYYLKRGAYVAA 186 (254)
T ss_pred ccccCHHHHHHHHHHHHHHHHH-CCCCcch--------------hhHHHHHHHHH--HHHHHHHHHHHHHHHHhcChHHH
Confidence 1112 222222222221 1111111 11111110000 0000 0 1244567778888888
Q ss_pred HHHHHHHHHCCCCCC-hh---hHHHHHHHHHhhCcHHHHHHHHHHhHH
Q 046194 647 LTLFSQMKLDGPLPD-HV---TFVGVLSACSHAGLVDEGFKHFKSMSQ 690 (934)
Q Consensus 647 ~~l~~~m~~~g~~p~-~~---t~~~ll~a~~~~g~~~~a~~~~~~m~~ 690 (934)
..-+++|++. -|+ .. .+..+..+|...|..++|.+.-.-+..
T Consensus 187 ~nR~~~v~e~--y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 187 INRFEEVLEN--YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHHhc--cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 8888888775 333 22 244455677777777777776544433
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.75 E-value=0.66 Score=46.03 Aligned_cols=118 Identities=15% Similarity=0.218 Sum_probs=90.0
Q ss_pred CChHHHHHHhhccC--CCCcccHHHHHHHHHcC-----CCchHHHHHHHHHHHccCCCCCCCCceeHHHHHHHHhcCccc
Q 046194 138 ESTDCARRIFEEIE--TRDLISWNSIISVYSQR-----GDTISVFKLFSRMQREGFRYSLKPNEYTFGSLITAAYSSVLS 210 (934)
Q Consensus 138 g~~~~a~~~f~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~~~~~p~~~t~~~ll~a~~~~~~~ 210 (934)
..+-..++.|...+ ++|-.+|-+++..+... +..+=.-..++.|++.|| .-|..+|+.||+.+=+..-.
T Consensus 48 K~Lv~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGV----erDl~vYk~LlnvfPKgkfi 123 (406)
T KOG3941|consen 48 KSLVHVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGV----ERDLDVYKGLLNVFPKGKFI 123 (406)
T ss_pred ccccchhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcc----hhhHHHHHHHHHhCcccccc
Confidence 34556677888887 78888899888888663 566667777889999999 99999999999887544322
Q ss_pred cch--------------HHHHHHHHHHHhCCCCCccchhHHHHHHHhcCCh-HHHHHHHHHhhh
Q 046194 211 GSY--------------LLQQILAMVKKAGLLSDLYVGSALVSGFARLGNF-YYARKIFEQMIQ 259 (934)
Q Consensus 211 ~~~--------------~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~-~~A~~l~~~m~~ 259 (934)
..- =+..+++.|...|+-||..+-..|+.+|.+.|.. .+..++.-.|++
T Consensus 124 P~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmPk 187 (406)
T KOG3941|consen 124 PQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMPK 187 (406)
T ss_pred cHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhhh
Confidence 111 1778999999999999999999999999988864 344445445543
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.71 E-value=1.3 Score=46.82 Aligned_cols=95 Identities=16% Similarity=0.076 Sum_probs=73.1
Q ss_pred ccHHHHHHHHhhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 046194 699 EQFSCMVDLLGRAGELDKIEEFINKM-PIT-PNSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMY 776 (934)
Q Consensus 699 ~~y~~li~~l~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~ 776 (934)
..+..+.-+|.+.+++.+|++..++. ... +|....--=..+|... |+++.|+..++++++++|.|-.+-.-|+.+-
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~--~e~~~A~~df~ka~k~~P~Nka~~~el~~l~ 335 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLAL--GEYDLARDDFQKALKLEPSNKAARAELIKLK 335 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhh--ccHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 34566777888888888888887776 333 4555665566677777 9999999999999999999988888888887
Q ss_pred HcCCChHHH-HHHHHHHHhC
Q 046194 777 ASGGKWEDV-AKARKAMKEA 795 (934)
Q Consensus 777 ~~~g~~~~a-~~~~~~m~~~ 795 (934)
.+..+..+. .+++..|-.+
T Consensus 336 ~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 336 QKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 777766665 6777777643
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=91.66 E-value=1.9 Score=38.89 Aligned_cols=56 Identities=11% Similarity=0.146 Sum_probs=32.0
Q ss_pred hcCChHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCc
Q 046194 710 RAGELDKIEEFINKM----PITP-NSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAV 767 (934)
Q Consensus 710 ~~g~~~~A~~~~~~m----~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 767 (934)
+.|++++|.+.|+.+ |..| ....--.|+.++... ++++.|...+++.++++|.++.
T Consensus 22 ~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~--~~y~~A~a~~~rFirLhP~hp~ 82 (142)
T PF13512_consen 22 QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQ--GDYEEAIAAYDRFIRLHPTHPN 82 (142)
T ss_pred HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHc--cCHHHHHHHHHHHHHhCCCCCC
Confidence 445555555555544 2222 123344566666666 7777777777777777776654
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.39 E-value=1.7 Score=43.36 Aligned_cols=98 Identities=10% Similarity=0.041 Sum_probs=71.2
Q ss_pred HHHHHhcCC--CCCcccHHHHHHHHHhC-----CChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccC-----------
Q 046194 310 SRSVFRFMI--GKDSVSWNTMISGLDQN-----GCYEEAIMNFCAMRRDGLMSSNFSLISTLSSCASLG----------- 371 (934)
Q Consensus 310 A~~~f~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~----------- 371 (934)
-++.|...+ ++|-.+|-+++..+... +..+=....++.|.+.|+.-|..+|..+|..+-+..
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 455666665 57888888888887653 556666677888999999999999999998776532
Q ss_pred -----chHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhcCC
Q 046194 372 -----WIMLGQQIHGEGLKLGLDSDVSVSNALLSLYADAGY 407 (934)
Q Consensus 372 -----~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~ 407 (934)
+-+-+..++++|..+|+.||..+-..|++++.+.+-
T Consensus 133 ~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred hhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 223456677777777777777777777777766554
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=91.39 E-value=1.2 Score=44.71 Aligned_cols=99 Identities=12% Similarity=0.138 Sum_probs=47.5
Q ss_pred hHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhhcCChHHHHHHHHhC----CCCCC-HHHHHHHH
Q 046194 664 TFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGRAGELDKIEEFINKM----PITPN-SLIWRTVL 737 (934)
Q Consensus 664 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m----~~~p~-~~~~~~ll 737 (934)
.|+.-+. +...|++.+|..-|....+.|.-.+- ...+--|...+...|++++|...|..+ |..|- +..+--|.
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 3554443 34556677887777777775311110 333444555566666666655555444 22221 12222233
Q ss_pred HHHHhccCCCcHHHHHHHHHHHhcCCCC
Q 046194 738 GACCRANCRKTELGRKAANMLFEMEPQN 765 (934)
Q Consensus 738 ~~~~~~~~~~~~~a~~~~~~~~~~~p~~ 765 (934)
...... |+.+.|...++.+.+--|..
T Consensus 223 ~~~~~l--~~~d~A~atl~qv~k~YP~t 248 (262)
T COG1729 223 VSLGRL--GNTDEACATLQQVIKRYPGT 248 (262)
T ss_pred HHHHHh--cCHHHHHHHHHHHHHHCCCC
Confidence 333333 44445555555444444443
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=91.19 E-value=1.6 Score=43.88 Aligned_cols=92 Identities=15% Similarity=0.196 Sum_probs=72.2
Q ss_pred ccHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-h---hhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHH
Q 046194 630 WNSMISGYARHGHGDKALTLFSQMKLDGPLPD-H---VTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCM 704 (934)
Q Consensus 630 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~---~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~l 704 (934)
|+.-+. +.+.|++..|...|...++.. |+ . ..+--|..++...|++++|..+|..+.+.|+-.|. ++.+--|
T Consensus 145 Y~~A~~-~~ksgdy~~A~~~F~~fi~~Y--P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 145 YNAALD-LYKSGDYAEAEQAFQAFIKKY--PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHH-HHHcCCHHHHHHHHHHHHHcC--CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 554444 345677899999999888853 33 1 22445788899999999999999999998777777 5888889
Q ss_pred HHHHhhcCChHHHHHHHHhC
Q 046194 705 VDLLGRAGELDKIEEFINKM 724 (934)
Q Consensus 705 i~~l~~~g~~~~A~~~~~~m 724 (934)
...+.+.|+.++|...+++.
T Consensus 222 g~~~~~l~~~d~A~atl~qv 241 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQV 241 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHH
Confidence 99999999999999888877
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.02 E-value=1.6 Score=44.52 Aligned_cols=159 Identities=13% Similarity=0.034 Sum_probs=119.4
Q ss_pred HcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHH----HHHHhhcCCh
Q 046194 639 RHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCM----VDLLGRAGEL 714 (934)
Q Consensus 639 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~l----i~~l~~~g~~ 714 (934)
-.|...+|-..++++.+. .+.|...+...=.+|...|..+.-...++++.. ...|+...|+.+ .-++..+|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 578888999999999886 456677777778899999999999999998876 356777666554 3445689999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCC----CCchHHHHHHHHHcCCChHHHHHH
Q 046194 715 DKIEEFINKM-PITP-NSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQ----NAVNYVLLANMYASGGKWEDVAKA 788 (934)
Q Consensus 715 ~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~----~~~~y~~l~~~~~~~g~~~~a~~~ 788 (934)
++|++.-++. .++| |...-.++....... |+..++.+..++-...-.+ -...|-+.+-.|...+.++.|.++
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~--~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMN--GRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhc--chhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 9999999887 5655 455667777777777 8999999888775544332 244577888888899999999999
Q ss_pred HHHHHhCCCcCCCc
Q 046194 789 RKAMKEAEVKKEAG 802 (934)
Q Consensus 789 ~~~m~~~~~~~~~~ 802 (934)
+..=.-+.+.++.+
T Consensus 270 yD~ei~k~l~k~Da 283 (491)
T KOG2610|consen 270 YDREIWKRLEKDDA 283 (491)
T ss_pred HHHHHHHHhhccch
Confidence 87554444444443
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=90.90 E-value=15 Score=39.35 Aligned_cols=73 Identities=14% Similarity=0.070 Sum_probs=46.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhccCCCc-ch-----HHHHHHHHHh---cCChhHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 046194 499 ALLSCYGKCGEMDDCEKIFARMSERRDE-VS-----WNSMISGYIH---NELLPKAMNLVWFMMQRGQRLDHFTFATVLS 569 (934)
Q Consensus 499 ~li~~~~~~g~~~~A~~~~~~~~~~p~~-~~-----~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 569 (934)
.|+-.|-...+++...++.+.+..-|+. .. --...-++.+ .|+.++|++++..+....-.++..||..+-+
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 3444577777788888888877765422 11 1122334455 7788888888888666666677777776665
Q ss_pred HH
Q 046194 570 AC 571 (934)
Q Consensus 570 a~ 571 (934)
.|
T Consensus 226 Iy 227 (374)
T PF13281_consen 226 IY 227 (374)
T ss_pred HH
Confidence 54
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=90.86 E-value=2.4 Score=47.11 Aligned_cols=130 Identities=13% Similarity=0.091 Sum_probs=86.3
Q ss_pred hhHHHHHHHhcCChHHHHHHHHHhhhcccchhhhhhhhhhhhhHHHHHHHHHcCCCchhHHHHHHHHhhccCChhHHHHH
Q 046194 234 GSALVSGFARLGNFYYARKIFEQMIQKNVVSMNGLMEGRRKGKEVHGYLIRSGLFDMVAVGNGLVNMYAKCGTIDDSRSV 313 (934)
Q Consensus 234 ~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 313 (934)
.+.++..+-+.|..+.|+++.+.-.. -.+...++|+++.|.++
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D~~~-------------------------------------rFeLAl~lg~L~~A~~~ 340 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTDPDH-------------------------------------RFELALQLGNLDIALEI 340 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS-HHH-------------------------------------HHHHHHHCT-HHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHhhcCChHH-------------------------------------HhHHHHhcCCHHHHHHH
Confidence 56777777888888888887655322 12567789999999999
Q ss_pred HhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCchHHHHHHHHHHhhhCCCCchh
Q 046194 314 FRFMIGKDSVSWNTMISGLDQNGCYEEAIMNFCAMRRDGLMSSNFSLISTLSSCASLGWIMLGQQIHGEGLKLGLDSDVS 393 (934)
Q Consensus 314 f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~ 393 (934)
.++.. +...|..|.....++|+++-|.+.|.+... |..++--+...|+.+.-+.+.......|-
T Consensus 341 a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~----- 404 (443)
T PF04053_consen 341 AKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD----- 404 (443)
T ss_dssp CCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT------
T ss_pred HHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC-----
Confidence 88766 566999999999999999999999998764 55555556666776666666665555442
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhh
Q 046194 394 VSNALLSLYADAGYLSRCLKVFFL 417 (934)
Q Consensus 394 ~~~~li~~y~~~g~~~~A~~~f~~ 417 (934)
+|.....+.-.|+.++..+++.+
T Consensus 405 -~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 405 -INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp -HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred -HHHHHHHHHHcCCHHHHHHHHHH
Confidence 33333344445666555555443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.70 E-value=40 Score=39.52 Aligned_cols=74 Identities=9% Similarity=0.172 Sum_probs=39.4
Q ss_pred HHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhccCCCcHHHHHHHHHHH-hcCCCCCchHHHHHHHHHcCCC
Q 046194 705 VDLLGRAGELDKIEEFINKMPITPNSLIWRTVLGACCRANCRKTELGRKAANMLF-EMEPQNAVNYVLLANMYASGGK 781 (934)
Q Consensus 705 i~~l~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~-~~~p~~~~~y~~l~~~~~~~g~ 781 (934)
+..+.+..+.+++..+.+..+-. ++..|-.+|..+... +.++...+...+++ .++.++.-+-..+.+++++.+.
T Consensus 712 ~~~~~q~~d~E~~it~~~~~g~~-~p~l~~~~L~yF~~~--~~i~~~~~~v~~vl~~I~~~~~ippl~VL~~Lakn~~ 786 (933)
T KOG2114|consen 712 MLYFQQISDPETVITLCERLGKE-DPSLWLHALKYFVSE--ESIEDCYEIVYKVLEAIEMQERIPPLHVLQILAKNGT 786 (933)
T ss_pred HHHHHHhhChHHHHHHHHHhCcc-ChHHHHHHHHHHhhh--cchhhHHHHHHHHHHHHHhcccCCHHHHHHHHhcCCc
Confidence 34445555666666666665433 566677777766666 55554444333322 2333343444455566665553
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=90.41 E-value=10 Score=34.58 Aligned_cols=33 Identities=21% Similarity=0.239 Sum_probs=16.7
Q ss_pred chHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhc
Q 046194 372 WIMLGQQIHGEGLKLGLDSDVSVSNALLSLYADA 405 (934)
Q Consensus 372 ~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~ 405 (934)
........++.+++.+ ..+....|.++..|++.
T Consensus 22 ~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 22 LLEELIPYLESALKLN-SENPALQTKLIELYAKY 54 (140)
T ss_pred cHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH
Confidence 3334444444444433 24455666677777654
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=90.36 E-value=25 Score=36.59 Aligned_cols=234 Identities=6% Similarity=-0.020 Sum_probs=109.0
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhhccCCCcchHHHHHHHHHhcCCh----hHHHHHHHHHHHcCCCCCHhHHHHHH
Q 046194 493 ETTIENALLSCYGKCGEMDDCEKIFARMSERRDEVSWNSMISGYIHNELL----PKAMNLVWFMMQRGQRLDHFTFATVL 568 (934)
Q Consensus 493 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~----~~A~~l~~~m~~~g~~p~~~t~~~ll 568 (934)
+..+....+..+.+.|..+.. ..+..+...+|...=...+.++.+.|+. ++++..+..+... .|+...-...+
T Consensus 36 d~~vR~~A~~aL~~~~~~~~~-~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~ 112 (280)
T PRK09687 36 NSLKRISSIRVLQLRGGQDVF-RLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAI 112 (280)
T ss_pred CHHHHHHHHHHHHhcCcchHH-HHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHH
Confidence 333444444444444432222 2222222222444444444555555542 3455555555332 34444444444
Q ss_pred HHHhchhhHH--HHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCCCCcccccHHHHHHHHcC-ChHH
Q 046194 569 SACASVATLE--RGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPVRNVYSWNSMISGYARHG-HGDK 645 (934)
Q Consensus 569 ~a~~~~~~~~--~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~ 645 (934)
.++...+.-. ............-..++..+-...+.++++.|+.+....+...+..+|...-...+.++.+.+ +...
T Consensus 113 ~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~ 192 (280)
T PRK09687 113 NATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNPD 192 (280)
T ss_pred HHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHH
Confidence 4444432111 011122222222223355555566666666666433333333444455544444445555442 2345
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhC-
Q 046194 646 ALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKM- 724 (934)
Q Consensus 646 A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m- 724 (934)
+...+..+.. .+|...-...+.++.+.|+ ..+...+-...+. ++ .....+.+++..|.- +|...+..+
T Consensus 193 ~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~----~~--~~~~a~~ALg~ig~~-~a~p~L~~l~ 261 (280)
T PRK09687 193 IREAFVAMLQ---DKNEEIRIEAIIGLALRKD-KRVLSVLIKELKK----GT--VGDLIIEAAGELGDK-TLLPVLDTLL 261 (280)
T ss_pred HHHHHHHHhc---CCChHHHHHHHHHHHccCC-hhHHHHHHHHHcC----Cc--hHHHHHHHHHhcCCH-hHHHHHHHHH
Confidence 6666666654 4455556666667766666 3455544444432 22 234556666666663 566666555
Q ss_pred CCCCCHHHHHHHHHHH
Q 046194 725 PITPNSLIWRTVLGAC 740 (934)
Q Consensus 725 ~~~p~~~~~~~ll~~~ 740 (934)
.-.||..+-..-+.+|
T Consensus 262 ~~~~d~~v~~~a~~a~ 277 (280)
T PRK09687 262 YKFDDNEIITKAIDKL 277 (280)
T ss_pred hhCCChhHHHHHHHHH
Confidence 3345555544444444
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=90.25 E-value=53 Score=40.22 Aligned_cols=119 Identities=13% Similarity=0.086 Sum_probs=73.5
Q ss_pred HHHHHHHHhcCCHHHHHHHhccCCCCCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHH
Q 046194 600 SALVDMYSKCGRIDYASRFFDLMPVRNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVD 679 (934)
Q Consensus 600 ~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 679 (934)
.-.++.--+.|.+.+|..++..-.+.--..|.+-..-+...+.+++|.-.|+..-+ ..-.+.+|..+|+|.
T Consensus 912 ~e~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr 982 (1265)
T KOG1920|consen 912 PECKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWR 982 (1265)
T ss_pred HHHHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHH
Confidence 33444445666777777666443332233444444445556777777777765422 223566788899999
Q ss_pred HHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhCCCCCC
Q 046194 680 EGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKMPITPN 729 (934)
Q Consensus 680 ~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~~~p~ 729 (934)
+|+.+..++.. +-.--..+-..|+.-+...++.-||-++..+....|.
T Consensus 983 ~~l~~a~ql~~--~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~~ 1030 (1265)
T KOG1920|consen 983 EALSLAAQLSE--GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSDPE 1030 (1265)
T ss_pred HHHHHHHhhcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCHH
Confidence 99988777643 1111123335678888889999999888888755553
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=90.02 E-value=0.5 Score=30.64 Aligned_cols=32 Identities=13% Similarity=0.099 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCC
Q 046194 731 LIWRTVLGACCRANCRKTELGRKAANMLFEMEPQ 764 (934)
Q Consensus 731 ~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~ 764 (934)
.+|..+...+... |+.++|...++++++++|+
T Consensus 2 ~~~~~~g~~~~~~--~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQL--GDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHT--T-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHh--CCchHHHHHHHHHHHHCcC
Confidence 3566667777777 7777777777777777775
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=89.97 E-value=5.5 Score=44.96 Aligned_cols=49 Identities=10% Similarity=-0.039 Sum_probs=26.7
Q ss_pred CCcHHHHHHHHHHHhcCCCCCch-HHHHHHHHHcCCCh-------HHHHHHHHHHHh
Q 046194 746 RKTELGRKAANMLFEMEPQNAVN-YVLLANMYASGGKW-------EDVAKARKAMKE 794 (934)
Q Consensus 746 ~~~~~a~~~~~~~~~~~p~~~~~-y~~l~~~~~~~g~~-------~~a~~~~~~m~~ 794 (934)
.++++|...+..+.+.+.-.... +...+-+|...|+. ++|.++++++..
T Consensus 319 ~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 319 HDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred chHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 55666666666655554433332 23444555556666 666666665543
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=89.93 E-value=0.69 Score=29.84 Aligned_cols=32 Identities=19% Similarity=0.239 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCC
Q 046194 732 IWRTVLGACCRANCRKTELGRKAANMLFEMEPQN 765 (934)
Q Consensus 732 ~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~ 765 (934)
.|..+...+... |+++.|+..++++++++|+|
T Consensus 3 ~~~~lg~~~~~~--~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQL--GNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHT--T-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHh--CCHHHHHHHHHHHHHHCcCC
Confidence 455566666666 77777777777777777764
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=89.91 E-value=32 Score=37.15 Aligned_cols=133 Identities=17% Similarity=0.055 Sum_probs=88.7
Q ss_pred CCchhhHHHHHHhhhCCCChHHHHHHhhccCCCCcc---cHHHHHHHHHcCCCchHHHHHHHHHHHccCCCCCCCCceeH
Q 046194 121 FDGLVSNVLIAMYGSCLESTDCARRIFEEIETRDLI---SWNSIISVYSQRGDTISVFKLFSRMQREGFRYSLKPNEYTF 197 (934)
Q Consensus 121 ~~~~~~~~li~~y~~~~g~~~~a~~~f~~~~~~~~~---~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~p~~~t~ 197 (934)
-|+..|-.||.-|... |..+..+++++.|..|-.. .|..-|++=....+++....+|.+-... ..+...|
T Consensus 40 tnI~S~fqLiq~~~tq-~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k------~l~ldLW 112 (660)
T COG5107 40 TNILSYFQLIQYLETQ-ESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKK------SLNLDLW 112 (660)
T ss_pred hhHHHHHHHHHHHhhh-hhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhh------hccHhHH
Confidence 4678899999999988 9999999999999987443 5999999988899999999999887765 3455666
Q ss_pred HHHHHHHhcCccccchH----HHHHHHHHHH-hCCCCCcc-chhHHHHHHH---h------cCChHHHHHHHHHhhhc
Q 046194 198 GSLITAAYSSVLSGSYL----LQQILAMVKK-AGLLSDLY-VGSALVSGFA---R------LGNFYYARKIFEQMIQK 260 (934)
Q Consensus 198 ~~ll~a~~~~~~~~~~~----a~~i~~~~~~-~g~~~~~~-~~~~li~~~~---~------~g~~~~A~~l~~~m~~~ 260 (934)
..-|.--.+......+. ..+.++.... .++.|-.. .|+..+..+- . ..+.+..+..+.+|...
T Consensus 113 ~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~t 190 (660)
T COG5107 113 MLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQT 190 (660)
T ss_pred HHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcC
Confidence 66665554444222211 3345555554 45555444 3444433322 2 33455566667777543
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=89.75 E-value=9.2 Score=35.33 Aligned_cols=90 Identities=18% Similarity=0.125 Sum_probs=62.3
Q ss_pred HHHHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhccCCC
Q 046194 670 SACSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGRAGELDKIEEFINKM-PITPNSLIWRTVLGACCRANCRK 747 (934)
Q Consensus 670 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~~~~~ 747 (934)
+.-...++.+++..++..+.- +.|. .++-..-+..+.+.|+|.+|..++++. .-.|....-.+|+..|... ..
T Consensus 18 ~~al~~~~~~D~e~lL~ALrv---LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~--~~ 92 (160)
T PF09613_consen 18 SVALRLGDPDDAEALLDALRV---LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYA--LG 92 (160)
T ss_pred HHHHccCChHHHHHHHHHHHH---hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHH--cC
Confidence 334566788888888888854 6677 333344456678889999999999988 3445555567777777777 55
Q ss_pred cHHHHHHHHHHHhcCCC
Q 046194 748 TELGRKAANMLFEMEPQ 764 (934)
Q Consensus 748 ~~~a~~~~~~~~~~~p~ 764 (934)
-..-...++.+++..|+
T Consensus 93 D~~Wr~~A~evle~~~d 109 (160)
T PF09613_consen 93 DPSWRRYADEVLESGAD 109 (160)
T ss_pred ChHHHHHHHHHHhcCCC
Confidence 55666677777777653
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=89.58 E-value=5 Score=37.18 Aligned_cols=83 Identities=10% Similarity=0.048 Sum_probs=33.3
Q ss_pred HcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHH
Q 046194 639 RHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIE 718 (934)
Q Consensus 639 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~ 718 (934)
+.|++++|..+|+-+...+ .-|..-+..|..+|-..+.+++|+..|.....- . .-|+..+-.+..+|...|+.+.|+
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l-~-~~dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTL-L-KNDYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-c-cCCCCccchHHHHHHHhCCHHHHH
Confidence 3444444444444444321 111122233333334444555555554444321 1 112222333444555555555555
Q ss_pred HHHHhC
Q 046194 719 EFINKM 724 (934)
Q Consensus 719 ~~~~~m 724 (934)
+-|+..
T Consensus 126 ~~f~~a 131 (165)
T PRK15331 126 QCFELV 131 (165)
T ss_pred HHHHHH
Confidence 544443
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=89.48 E-value=5.2 Score=36.13 Aligned_cols=53 Identities=11% Similarity=0.206 Sum_probs=26.2
Q ss_pred HHcCChHHHHHHHHHHHHCCCCC--ChhhHHHHHHHHHhhCcHHHHHHHHHHhHH
Q 046194 638 ARHGHGDKALTLFSQMKLDGPLP--DHVTFVGVLSACSHAGLVDEGFKHFKSMSQ 690 (934)
Q Consensus 638 ~~~g~~~~A~~l~~~m~~~g~~p--~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 690 (934)
.+.|++++|++.|+.+...-..+ ....-..++.++.+.|++++|...+++..+
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFir 75 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIR 75 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 34555555555555555531110 122234455555555555555555555555
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.83 E-value=18 Score=35.70 Aligned_cols=86 Identities=12% Similarity=0.084 Sum_probs=44.8
Q ss_pred cHHHHHHHHhhcCChHHHHHHHHhCC-------CCCCH-HHHHHHHHHHHhccCCCcHHHHHHHHHHHhc----CCCCCc
Q 046194 700 QFSCMVDLLGRAGELDKIEEFINKMP-------ITPNS-LIWRTVLGACCRANCRKTELGRKAANMLFEM----EPQNAV 767 (934)
Q Consensus 700 ~y~~li~~l~~~g~~~~A~~~~~~m~-------~~p~~-~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~----~p~~~~ 767 (934)
.|......|.|..+++||-..|.+-+ .-|+. ..+-+++-.+... .|+..|++.++.-.++ .|++..
T Consensus 152 l~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~--~Dyv~aekc~r~~~qip~f~~sed~r 229 (308)
T KOG1585|consen 152 LYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYA--HDYVQAEKCYRDCSQIPAFLKSEDSR 229 (308)
T ss_pred HHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhH--HHHHHHHHHhcchhcCccccChHHHH
Confidence 34445556677777777766555431 12222 1122222223333 5677777777765544 245555
Q ss_pred hHHHHHHHHHcCCChHHHHHH
Q 046194 768 NYVLLANMYASGGKWEDVAKA 788 (934)
Q Consensus 768 ~y~~l~~~~~~~g~~~~a~~~ 788 (934)
....|...| ..|+.+++.++
T Consensus 230 ~lenLL~ay-d~gD~E~~~kv 249 (308)
T KOG1585|consen 230 SLENLLTAY-DEGDIEEIKKV 249 (308)
T ss_pred HHHHHHHHh-ccCCHHHHHHH
Confidence 555555444 45666666555
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=88.82 E-value=3.6 Score=42.65 Aligned_cols=48 Identities=6% Similarity=0.052 Sum_probs=27.7
Q ss_pred HHhcCChhHHHHHHHHHHHcC--CCCCHhHHHHHHHHHhchhhHHHHHHH
Q 046194 536 YIHNELLPKAMNLVWFMMQRG--QRLDHFTFATVLSACASVATLERGMEV 583 (934)
Q Consensus 536 ~~~~g~~~~A~~l~~~m~~~g--~~p~~~t~~~ll~a~~~~~~~~~a~~i 583 (934)
+.+..+.++|+..+.+-...- ..---.+|..+..+.++.|..++++..
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~ 65 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKF 65 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHH
Confidence 345667778887777655431 111225566666666666666665544
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=88.72 E-value=39 Score=36.56 Aligned_cols=151 Identities=11% Similarity=0.031 Sum_probs=76.4
Q ss_pred CCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCC---ChhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC--cc
Q 046194 625 RNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLP---DHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ--LE 699 (934)
Q Consensus 625 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~ 699 (934)
....+|..++..+.+.|+++.|...+.++...+..+ +......-....-..|+..+|+..++...+. .+..+ ..
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~ 222 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSI 222 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhccccc
Confidence 344578888888888899998888888887743222 2222333344556678888888888777662 11111 11
Q ss_pred cHHHHHHHHhhcCChHHHHHH-HHhCCCCCCHHHHHHHHHHHHhc----cCCCcHHHHHHHHHHHhcCCCCCchHHHHHH
Q 046194 700 QFSCMVDLLGRAGELDKIEEF-INKMPITPNSLIWRTVLGACCRA----NCRKTELGRKAANMLFEMEPQNAVNYVLLAN 774 (934)
Q Consensus 700 ~y~~li~~l~~~g~~~~A~~~-~~~m~~~p~~~~~~~ll~~~~~~----~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~ 774 (934)
....+...+.. ..+..... ........-..++..+..-+... ..++.+.+...++.+.++.|.....|..++.
T Consensus 223 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~ 300 (352)
T PF02259_consen 223 SNAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWAL 300 (352)
T ss_pred cHHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHH
Confidence 11111111100 00000000 00000000001111111111111 1277788889999999999988777777766
Q ss_pred HHHc
Q 046194 775 MYAS 778 (934)
Q Consensus 775 ~~~~ 778 (934)
.+.+
T Consensus 301 ~~~~ 304 (352)
T PF02259_consen 301 FNDK 304 (352)
T ss_pred HHHH
Confidence 5443
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=88.45 E-value=2.5 Score=47.70 Aligned_cols=128 Identities=20% Similarity=0.216 Sum_probs=81.1
Q ss_pred HHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCc-----ccHHHHHHHH-h---hcCChHHHHHHHHhC-CCCCCHHHHHHH
Q 046194 667 GVLSACSHAGLVDEGFKHFKSMSQVYGLIPQL-----EQFSCMVDLL-G---RAGELDKIEEFINKM-PITPNSLIWRTV 736 (934)
Q Consensus 667 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-----~~y~~li~~l-~---~~g~~~~A~~~~~~m-~~~p~~~~~~~l 736 (934)
.+++...-.|+-+.|++.+....+..++.-.. -.|..++..+ . .....+.|.++++.+ ..-|+...|.-.
T Consensus 193 kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~ 272 (468)
T PF10300_consen 193 KLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFF 272 (468)
T ss_pred HHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 34444445566666666665554422222211 1222222222 2 345778888888887 556888887766
Q ss_pred HHHHHhccCCCcHHHHHHHHHHHhcCCC----CCchHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 046194 737 LGACCRANCRKTELGRKAANMLFEMEPQ----NAVNYVLLANMYASGGKWEDVAKARKAMKEA 795 (934)
Q Consensus 737 l~~~~~~~~~~~~~a~~~~~~~~~~~p~----~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~ 795 (934)
-+-+.... |+++.|...++.+.+...+ ..-.+.-+++.+...++|++|.+.+..+.+.
T Consensus 273 ~gR~~~~~-g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~ 334 (468)
T PF10300_consen 273 EGRLERLK-GNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE 334 (468)
T ss_pred HHHHHHHh-cCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc
Confidence 66555443 8888888888876643322 2345778999999999999999999998763
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=88.13 E-value=1.1 Score=31.20 Aligned_cols=29 Identities=14% Similarity=0.239 Sum_probs=25.9
Q ss_pred CchHHHHHHHHHcCCChHHHHHHHHHHHh
Q 046194 766 AVNYVLLANMYASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 766 ~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 794 (934)
|..+..++.+|...|++++|.++++...+
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45688999999999999999999998875
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.13 E-value=31 Score=34.64 Aligned_cols=63 Identities=16% Similarity=0.270 Sum_probs=38.6
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCC-C-ChhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCc
Q 046194 636 GYARHGHGDKALTLFSQMKLDGPL-P-DHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQL 698 (934)
Q Consensus 636 ~~~~~g~~~~A~~l~~~m~~~g~~-p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~ 698 (934)
.-.+.|++++|...|+.+..+..- | ...+...++-++-+.+++++|+..+++....|+-.|+.
T Consensus 43 ~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~ 107 (254)
T COG4105 43 TELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA 107 (254)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh
Confidence 334567777777777777754211 1 13345555556667777777777777777766555553
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.05 E-value=59 Score=37.87 Aligned_cols=103 Identities=11% Similarity=0.110 Sum_probs=71.4
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhcccchhhhhhhhhhhhhHHHHHHHHHcCCC---chhHHHHHHHHhhccCChhHHHHH
Q 046194 237 LVSGFARLGNFYYARKIFEQMIQKNVVSMNGLMEGRRKGKEVHGYLIRSGLFD---MVAVGNGLVNMYAKCGTIDDSRSV 313 (934)
Q Consensus 237 li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~---~~~~~~~li~~~~~~g~~~~A~~~ 313 (934)
=|+-+.+.+.+++|+.+.+..... .+ -..++...|+.|.-.|++++|-.+
T Consensus 362 hi~Wll~~k~yeeAl~~~k~~~~~---------------------------~~~~~i~kv~~~yI~HLl~~~~y~~Aas~ 414 (846)
T KOG2066|consen 362 HIDWLLEKKKYEEALDAAKASIGN---------------------------EERFVIKKVGKTYIDHLLFEGKYDEAASL 414 (846)
T ss_pred hHHHHHHhhHHHHHHHHHHhccCC---------------------------ccccchHHHHHHHHHHHHhcchHHHHHhh
Confidence 356677788888888877665432 22 234667888889999999999999
Q ss_pred HhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhc
Q 046194 314 FRFMIGKDSVSWNTMISGLDQNGCYEEAIMNFCAMRRDGLMSSNFSLISTLSSCAS 369 (934)
Q Consensus 314 f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 369 (934)
.-.|...+..-|.--+.-+...++......+ +....-+.+...|..+|..+..
T Consensus 415 ~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 415 CPKMLGNNAAEWELWVFKFAELDQLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred hHHHhcchHHHHHHHHHHhccccccchhhcc---CCCCCcccCchHHHHHHHHHHH
Confidence 9999888888998888888888776654333 2222223445566666666554
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=88.01 E-value=10 Score=39.69 Aligned_cols=64 Identities=11% Similarity=0.193 Sum_probs=42.5
Q ss_pred hHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHHh-hC--cHHHHHHHHHHhHHhhCCCCCcccHHHHHHH
Q 046194 643 GDKALTLFSQMKLDGPLPDH-VTFVGVLSACSH-AG--LVDEGFKHFKSMSQVYGLIPQLEQFSCMVDL 707 (934)
Q Consensus 643 ~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~-~g--~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~ 707 (934)
.+++...|+.+.+.|+..+. ..+.+-+-++.. .. .+..+.++++.+.+. ++++...+|..++-+
T Consensus 159 ~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~-~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 159 AERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKN-GVKIKYMHYPTLGLL 226 (297)
T ss_pred HHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHc-CCccccccccHHHHH
Confidence 35677888888888877663 334443334332 22 255788888888885 999998888877543
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.95 E-value=13 Score=35.97 Aligned_cols=29 Identities=21% Similarity=0.276 Sum_probs=25.5
Q ss_pred CchHHHHHHHHHcCCChHHHHHHHHHHHh
Q 046194 766 AVNYVLLANMYASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 766 ~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 794 (934)
..+|.-|+..|...|..++|..+++....
T Consensus 237 TEtyFYL~K~~l~~G~~~~A~~LfKLaia 265 (297)
T COG4785 237 TETYFYLGKYYLSLGDLDEATALFKLAVA 265 (297)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 45799999999999999999999987764
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=87.92 E-value=7.3 Score=42.60 Aligned_cols=150 Identities=14% Similarity=0.040 Sum_probs=84.2
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHH
Q 046194 638 ARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKI 717 (934)
Q Consensus 638 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A 717 (934)
-+..++++-+++-++..+ +.||..+-..++ +-..+.-+.++.++|++..+. +- ..|..- ......|. .
T Consensus 179 WRERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkA-gE----~~lg~s-~~~~~~g~---~ 246 (539)
T PF04184_consen 179 WRERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKA-GE----ASLGKS-QFLQHHGH---F 246 (539)
T ss_pred HhcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHH-HH----Hhhchh-hhhhcccc---h
Confidence 445566677777777777 678765544333 334455678888888887653 10 000000 00001111 1
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCC--CCchHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 046194 718 EEFINKMPITPNSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQ--NAVNYVLLANMYASGGKWEDVAKARKAMKEA 795 (934)
Q Consensus 718 ~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~ 795 (934)
.+.+..-..+|-..+=..|...+++. |+.++|.+.++.+++..|. +-..+..|...|...+++.|+..++.+-.+-
T Consensus 247 ~e~~~~Rdt~~~~y~KrRLAmCarkl--Gr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi 324 (539)
T PF04184_consen 247 WEAWHRRDTNVLVYAKRRLAMCARKL--GRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI 324 (539)
T ss_pred hhhhhccccchhhhhHHHHHHHHHHh--CChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc
Confidence 11111111223333445566666666 8888888888888777664 3456778888888888888888877665443
Q ss_pred CCcCCC
Q 046194 796 EVKKEA 801 (934)
Q Consensus 796 ~~~~~~ 801 (934)
...+..
T Consensus 325 ~lpkSA 330 (539)
T PF04184_consen 325 SLPKSA 330 (539)
T ss_pred cCCchH
Confidence 333433
|
The molecular function of this protein is uncertain. |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.44 E-value=3.8 Score=41.85 Aligned_cols=75 Identities=17% Similarity=0.150 Sum_probs=61.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhhccC-C-CcchHHHHHHHHHhcCChhHHHHHHHHHHH-----cCCCCCHhHHHHH
Q 046194 495 TIENALLSCYGKCGEMDDCEKIFARMSER-R-DEVSWNSMISGYIHNELLPKAMNLVWFMMQ-----RGQRLDHFTFATV 567 (934)
Q Consensus 495 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~-p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~t~~~l 567 (934)
.++..++..+..+|+.+.+.+.++++... | |...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+....
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 35578899999999999999999998875 4 888999999999999999999999998866 4677766555443
Q ss_pred HH
Q 046194 568 LS 569 (934)
Q Consensus 568 l~ 569 (934)
..
T Consensus 234 ~~ 235 (280)
T COG3629 234 EE 235 (280)
T ss_pred HH
Confidence 33
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=87.39 E-value=8.8 Score=40.15 Aligned_cols=129 Identities=10% Similarity=0.160 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHcCCCCCcccHHHHHHHHhc--cCCchHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHH
Q 046194 441 SEAVKYYLDMRRAGWSPNGVTFINILAAASS--FSMGKLGHQVHAQVIKYNVANETTIENALLSCYGKCGEMDDCEKIFA 518 (934)
Q Consensus 441 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~--~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 518 (934)
++.+.+++.|.+.|++-+..+|.+.+-.... ..+. ......|..+|+
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~-------------------------------~~~~~ra~~iy~ 127 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDY-------------------------------DEIIQRAKEIYK 127 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccH-------------------------------HHHHHHHHHHHH
Confidence 6777888888888888887777543322211 0000 012345666777
Q ss_pred hhccC------CCcchHHHHHHHHHhcCC----hhHHHHHHHHHHHcCCCCCH--hHHHHHHHHHhchhh--HHHHHHHH
Q 046194 519 RMSER------RDEVSWNSMISGYIHNEL----LPKAMNLVWFMMQRGQRLDH--FTFATVLSACASVAT--LERGMEVH 584 (934)
Q Consensus 519 ~~~~~------p~~~~~~~li~~~~~~g~----~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~~~--~~~a~~i~ 584 (934)
.|++. ++-..+.+|+.. ..++ .+++...|+.+...|...+. ...+.+|..+..... ..++..++
T Consensus 128 ~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~ 205 (297)
T PF13170_consen 128 EMKKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELY 205 (297)
T ss_pred HHHHhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 77664 344455555544 2222 24556677777776765532 444444444433222 44667777
Q ss_pred HHHHHhCCCCcHhHHHHH
Q 046194 585 ACGVRACLEFDVVIGSAL 602 (934)
Q Consensus 585 ~~~~~~~~~~~~~~~~~l 602 (934)
+.+.+.|+++....|..+
T Consensus 206 ~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 206 NALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHcCCccccccccHH
Confidence 777777777665555544
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=87.14 E-value=71 Score=37.74 Aligned_cols=48 Identities=17% Similarity=0.279 Sum_probs=29.0
Q ss_pred CCcHHHHHHHHHHHhcC---CCCCc-hH-----HHHHHHHHcCCChHHHHHHHHHHH
Q 046194 746 RKTELGRKAANMLFEME---PQNAV-NY-----VLLANMYASGGKWEDVAKARKAMK 793 (934)
Q Consensus 746 ~~~~~a~~~~~~~~~~~---p~~~~-~y-----~~l~~~~~~~g~~~~a~~~~~~m~ 793 (934)
|++.+..........+- |+... .| ..+.+.|...|+.++|...+.+..
T Consensus 548 ~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~ 604 (608)
T PF10345_consen 548 GDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLD 604 (608)
T ss_pred CCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 67766555444444433 22222 23 255567888999999988877654
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=86.91 E-value=44 Score=35.10 Aligned_cols=95 Identities=14% Similarity=0.104 Sum_probs=49.9
Q ss_pred cccHHHHHHHHcCChHHHHHHHHHHHHC--CCCCC--hhhH-----HHHHHHHHhhCcHHHHHHHHHHhHHh---hCCCC
Q 046194 629 SWNSMISGYARHGHGDKALTLFSQMKLD--GPLPD--HVTF-----VGVLSACSHAGLVDEGFKHFKSMSQV---YGLIP 696 (934)
Q Consensus 629 ~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~--~~t~-----~~ll~a~~~~g~~~~a~~~~~~m~~~---~~~~p 696 (934)
.+-.|-+.|.+..++++|+-+..+..+. .+..+ ..-| ..+.-++...|...+|.+.-++..+- +|-.|
T Consensus 164 vcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra 243 (518)
T KOG1941|consen 164 VCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRA 243 (518)
T ss_pred hhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChH
Confidence 5556666666666666666555544331 11111 1111 12233455666666666666554432 23222
Q ss_pred C-cccHHHHHHHHhhcCChHHHHHHHHh
Q 046194 697 Q-LEQFSCMVDLLGRAGELDKIEEFINK 723 (934)
Q Consensus 697 ~-~~~y~~li~~l~~~g~~~~A~~~~~~ 723 (934)
. .....++.|.|...|+.|.|+.-++.
T Consensus 244 ~~arc~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 244 LQARCLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 2 33455677778777877777665554
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.80 E-value=3.2 Score=39.24 Aligned_cols=87 Identities=18% Similarity=0.234 Sum_probs=57.7
Q ss_pred HHhhcCChHHHHHHHHhC-CCCC------CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcC
Q 046194 707 LLGRAGELDKIEEFINKM-PITP------NSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASG 779 (934)
Q Consensus 707 ~l~~~g~~~~A~~~~~~m-~~~p------~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~ 779 (934)
-+.+.|++++|..-+... .+-| ..+.|..-..+..+. +..+.|.....++++++|........-+.+|.+.
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl--~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKL--RKWESAIEDCSKAIELNPTYEKALERRAEAYEKM 181 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHh--hhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhh
Confidence 344556666666555543 1112 122233333344445 7788888888888888888877778888888888
Q ss_pred CChHHHHHHHHHHHhC
Q 046194 780 GKWEDVAKARKAMKEA 795 (934)
Q Consensus 780 g~~~~a~~~~~~m~~~ 795 (934)
.++++|.+=++++.+.
T Consensus 182 ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 182 EKYEEALEDYKKILES 197 (271)
T ss_pred hhHHHHHHHHHHHHHh
Confidence 8888888888888753
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=86.51 E-value=1.2 Score=29.40 Aligned_cols=26 Identities=15% Similarity=0.235 Sum_probs=21.6
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHH
Q 046194 768 NYVLLANMYASGGKWEDVAKARKAMK 793 (934)
Q Consensus 768 ~y~~l~~~~~~~g~~~~a~~~~~~m~ 793 (934)
+|..|+++|.+.|+|++|.++++...
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36789999999999999999988744
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=86.41 E-value=45 Score=34.74 Aligned_cols=63 Identities=14% Similarity=0.133 Sum_probs=30.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhccCC--CcchHHHHHHHHHh--cCChhHHHHHHHHHHHcCCCCCH
Q 046194 499 ALLSCYGKCGEMDDCEKIFARMSERR--DEVSWNSMISGYIH--NELLPKAMNLVWFMMQRGQRLDH 561 (934)
Q Consensus 499 ~li~~~~~~g~~~~A~~~~~~~~~~p--~~~~~~~li~~~~~--~g~~~~A~~l~~~m~~~g~~p~~ 561 (934)
.-++.+.+.++.+.+.+++.+|.... ....+...+..+-+ ......|...+.++....+.|..
T Consensus 126 L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 126 LKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQLAEKSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCCh
Confidence 33444444566666666666665542 22344444444311 22334555555555544444443
|
It is also involved in sporulation []. |
| >KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=86.25 E-value=21 Score=40.83 Aligned_cols=101 Identities=22% Similarity=0.367 Sum_probs=62.3
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCChhh---HHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCC
Q 046194 637 YARHGHGDKALTLFSQMKLDGPLPDHVT---FVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGE 713 (934)
Q Consensus 637 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t---~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~ 713 (934)
|-..+..+.|++.|++..+ +.|+..+ +..|+.+-.+ .++...++ +.+ |+ .|-.+++|.|.
T Consensus 297 ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~aaG~--~Fens~El-q~I----gm--------kLn~LlgrKG~ 359 (1226)
T KOG4279|consen 297 YTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRAAGE--HFENSLEL-QQI----GM--------KLNSLLGRKGA 359 (1226)
T ss_pred CcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHHhhh--hccchHHH-HHH----HH--------HHHHHhhccch
Confidence 3445556788888998887 6787543 5555544322 12222221 111 11 24456788998
Q ss_pred hHHHHHHHHhCCCCCCHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCC
Q 046194 714 LDKIEEFINKMPITPNSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNA 766 (934)
Q Consensus 714 ~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 766 (934)
++.-.++++-. ..+.+-... +|+..+.+++++++++.|+.-
T Consensus 360 leklq~YWdV~----------~y~~asVLA--nd~~kaiqAae~mfKLk~P~W 400 (1226)
T KOG4279|consen 360 LEKLQEYWDVA----------TYFEASVLA--NDYQKAIQAAEMMFKLKPPVW 400 (1226)
T ss_pred HHHHHHHHhHH----------Hhhhhhhhc--cCHHHHHHHHHHHhccCCcee
Confidence 88877766432 234444455 889999999999999998753
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=85.93 E-value=4.1 Score=41.83 Aligned_cols=21 Identities=19% Similarity=0.393 Sum_probs=14.9
Q ss_pred CCcHHHHHHHHHHHhcCCCCC
Q 046194 746 RKTELGRKAANMLFEMEPQNA 766 (934)
Q Consensus 746 ~~~~~a~~~~~~~~~~~p~~~ 766 (934)
|+.++|..-++.+++++|++.
T Consensus 179 g~~~EAKkD~E~vL~LEP~~~ 199 (536)
T KOG4648|consen 179 GNNMEAKKDCETVLALEPKNI 199 (536)
T ss_pred hhHHHHHHhHHHHHhhCcccH
Confidence 666777777777777777753
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=85.77 E-value=68 Score=36.26 Aligned_cols=123 Identities=9% Similarity=-0.075 Sum_probs=62.8
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhhccC--CCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHH
Q 046194 493 ETTIENALLSCYGKCGEMDDCEKIFARMSER--RDEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSA 570 (934)
Q Consensus 493 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 570 (934)
+...|..-++.-.+.|+.+.+.-+|++..-. .=...|--.+.-....|+.+-|-.++..-.+--++-.+.+-..--.-
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 3445666666667777777777777766542 01122333333333346666666555444332222222221111122
Q ss_pred HhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHH
Q 046194 571 CASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYAS 616 (934)
Q Consensus 571 ~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~ 616 (934)
+-..|+...|..+++.+...- +.-+.+-.--+.+..+.|..+.+.
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e~-pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESEY-PGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred HHhhccHHHHHHHHHHHHhhC-CchhhhHHHHHhHHHHhcchhhhh
Confidence 344567777777777766543 222233333455556666666665
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.54 E-value=4.6 Score=35.34 Aligned_cols=88 Identities=14% Similarity=0.091 Sum_probs=47.1
Q ss_pred HHHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhhcCChHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhc
Q 046194 671 ACSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGRAGELDKIEEFINKM----PITPN--SLIWRTVLGACCRA 743 (934)
Q Consensus 671 a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m----~~~p~--~~~~~~ll~~~~~~ 743 (934)
+.+..|+.+.|++.|.+... +-|. ...||.-..+|.-.|+.++|++-+++. +-+.. -..|.--...|+..
T Consensus 52 alaE~g~Ld~AlE~F~qal~---l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALC---LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHhccchHHHHHHHHHHHH---hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 34566666666666666654 3333 566666666666666666666666554 11100 01122222234444
Q ss_pred cCCCcHHHHHHHHHHHhcCC
Q 046194 744 NCRKTELGRKAANMLFEMEP 763 (934)
Q Consensus 744 ~~~~~~~a~~~~~~~~~~~p 763 (934)
|+.+.|..-++.+-++..
T Consensus 129 --g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 129 --GNDDAARADFEAAAQLGS 146 (175)
T ss_pred --CchHHHHHhHHHHHHhCC
Confidence 677777666665555543
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=85.53 E-value=49 Score=34.40 Aligned_cols=128 Identities=15% Similarity=0.108 Sum_probs=62.1
Q ss_pred CchhhHHHHHHhhhCCCChHHHHHHhhccCCCCcccHHHHHHHHHcCCCc----hHHHHHHHHHHHccCCCCCCCCceeH
Q 046194 122 DGLVSNVLIAMYGSCLESTDCARRIFEEIETRDLISWNSIISVYSQRGDT----ISVFKLFSRMQREGFRYSLKPNEYTF 197 (934)
Q Consensus 122 ~~~~~~~li~~y~~~~g~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~----~~A~~l~~~m~~~g~~~~~~p~~~t~ 197 (934)
|..+.-..+...... |+.+....+..-...+|...=...+.++.+-|+. .+++.++..+... .|+...-
T Consensus 36 d~~vR~~A~~aL~~~-~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~------D~d~~VR 108 (280)
T PRK09687 36 NSLKRISSIRVLQLR-GGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE------DKSACVR 108 (280)
T ss_pred CHHHHHHHHHHHHhc-CcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc------CCCHHHH
Confidence 333333334444443 4433333333323344444444555666666653 4577777766433 4565555
Q ss_pred HHHHHHHhcCccccchHHHHHHHHHHHhCCCCCccchhHHHHHHHhcCChHHHHHHHHHh
Q 046194 198 GSLITAAYSSVLSGSYLLQQILAMVKKAGLLSDLYVGSALVSGFARLGNFYYARKIFEQM 257 (934)
Q Consensus 198 ~~ll~a~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 257 (934)
...+.+++..+.................-..++..+--..+.++.+.|+.+ |...+-.+
T Consensus 109 ~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~-ai~~L~~~ 167 (280)
T PRK09687 109 ASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDEA-AIPLLINL 167 (280)
T ss_pred HHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHH-HHHHHHHH
Confidence 566666655542211001122333333333446666667777777777644 44444443
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=84.43 E-value=94 Score=36.71 Aligned_cols=91 Identities=12% Similarity=0.082 Sum_probs=56.5
Q ss_pred CCCchHHHHHHHHHHHccCCCCCCCCceeHHHHHHHHhcCccccchHHHHHHHHHHHhCC---------CCCccchhHHH
Q 046194 168 RGDTISVFKLFSRMQREGFRYSLKPNEYTFGSLITAAYSSVLSGSYLLQQILAMVKKAGL---------LSDLYVGSALV 238 (934)
Q Consensus 168 ~g~~~~A~~l~~~m~~~g~~~~~~p~~~t~~~ll~a~~~~~~~~~~~a~~i~~~~~~~g~---------~~~~~~~~~li 238 (934)
.+++..|++.++.+....- ..-.|-...+..++.++........+.+.+.+..+..... .|-..+|..++
T Consensus 152 ~~d~~~Al~~L~~~~~~a~-~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll 230 (608)
T PF10345_consen 152 HKDYNAALENLQSIAQLAN-QRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLL 230 (608)
T ss_pred cccHHHHHHHHHHHHHHhh-hcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHH
Confidence 3789999999988765320 0005666777778888776554433335566655543222 23445666666
Q ss_pred HHHH--hcCChHHHHHHHHHhhh
Q 046194 239 SGFA--RLGNFYYARKIFEQMIQ 259 (934)
Q Consensus 239 ~~~~--~~g~~~~A~~l~~~m~~ 259 (934)
..++ ..|++..+...++++.+
T Consensus 231 ~l~~~l~~~~~~~~~~~L~~lq~ 253 (608)
T PF10345_consen 231 DLCCSLQQGDVKNSKQKLKQLQQ 253 (608)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 6654 57888888888777743
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=84.26 E-value=53 Score=33.71 Aligned_cols=116 Identities=10% Similarity=0.132 Sum_probs=62.6
Q ss_pred HhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCCCCc-cccc---HHHHHHHHcCChHHH
Q 046194 571 CASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPVRNV-YSWN---SMISGYARHGHGDKA 646 (934)
Q Consensus 571 ~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~-~~~~---~li~~~~~~g~~~~A 646 (934)
....++...+..+++.+....-. +....-.|+..|...|+.+.|..++..++.... .-|. +-|..+.+.....+.
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~ 222 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEI 222 (304)
T ss_pred hhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCH
Confidence 34556666666666666554322 244455678888889999999999988873211 1111 122333333333333
Q ss_pred HHHHHHHHHCCCCCC-hhhHHHHHHHHHhhCcHHHHHHHHHHhHH
Q 046194 647 LTLFSQMKLDGPLPD-HVTFVGVLSACSHAGLVDEGFKHFKSMSQ 690 (934)
Q Consensus 647 ~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 690 (934)
..+-++.-. .|+ ...-..+...+...|+.++|.+.+-.+.+
T Consensus 223 ~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 223 QDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred HHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 333333322 453 33344455566677777777765544443
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=83.28 E-value=1e+02 Score=36.29 Aligned_cols=85 Identities=13% Similarity=0.095 Sum_probs=40.4
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhchhhHHHHHHHHHHHHH-hCCCCcHhHHHHHHHHHHh---c
Q 046194 534 SGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVATLERGMEVHACGVR-ACLEFDVVIGSALVDMYSK---C 609 (934)
Q Consensus 534 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~~~~~~~~~~~~li~~y~~---~ 609 (934)
..+.-.|+++.|++.+.+ ..+...|.+.+...+..+.-..-.+... ..+.. ..-.|...-+..||..|.+ .
T Consensus 266 ~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~~ 340 (613)
T PF04097_consen 266 QVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFEI 340 (613)
T ss_dssp HHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTTT
T ss_pred HHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHhc
Confidence 445568999999998877 3345667777777666554333222211 22211 1111122456678888875 4
Q ss_pred CCHHHHHHHhccCC
Q 046194 610 GRIDYASRFFDLMP 623 (934)
Q Consensus 610 g~~~~A~~~~~~~~ 623 (934)
.+..+|.+.|--+.
T Consensus 341 td~~~Al~Y~~li~ 354 (613)
T PF04097_consen 341 TDPREALQYLYLIC 354 (613)
T ss_dssp T-HHHHHHHHHGGG
T ss_pred cCHHHHHHHHHHHH
Confidence 56777887776655
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=83.26 E-value=73 Score=34.57 Aligned_cols=136 Identities=10% Similarity=0.129 Sum_probs=99.0
Q ss_pred cccccHHHHHHHHcCChHHHHHHHHHHHHCC-CCCChhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccH-HHH
Q 046194 627 VYSWNSMISGYARHGHGDKALTLFSQMKLDG-PLPDHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQF-SCM 704 (934)
Q Consensus 627 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y-~~l 704 (934)
...|...+..-.+..-.+.|..+|-+..+.| +.++...+++++.-++ .|+...|.++|+.-...+ ||...| .-.
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f---~d~~~y~~ky 472 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF---PDSTLYKEKY 472 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC---CCchHHHHHH
Confidence 4467777777777777888888999988888 5566777777776544 578888888888766532 554443 345
Q ss_pred HHHHhhcCChHHHHHHHHhC--CCCCC--HHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCch
Q 046194 705 VDLLGRAGELDKIEEFINKM--PITPN--SLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVN 768 (934)
Q Consensus 705 i~~l~~~g~~~~A~~~~~~m--~~~p~--~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 768 (934)
++-+.+-++-+.|..+|++. .+..+ -.+|..++.-=... |++..+...-++..++-|+....
T Consensus 473 l~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~--G~lN~v~sLe~rf~e~~pQen~~ 538 (660)
T COG5107 473 LLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMV--GSLNNVYSLEERFRELVPQENLI 538 (660)
T ss_pred HHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhh--cchHHHHhHHHHHHHHcCcHhHH
Confidence 66777888888888888865 23333 45788888877777 88888888888888888876433
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=82.67 E-value=4.5 Score=41.33 Aligned_cols=76 Identities=16% Similarity=0.190 Sum_probs=58.4
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHhccCCC---CCcccccHHHHHHHHcCChHHHHHHHHHHHH-----CCCCCChhhHHH
Q 046194 596 VVIGSALVDMYSKCGRIDYASRFFDLMPV---RNVYSWNSMISGYARHGHGDKALTLFSQMKL-----DGPLPDHVTFVG 667 (934)
Q Consensus 596 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~t~~~ 667 (934)
..++..++..+..+|+.+.+...++++.. -|...|..+|.+|.+.|+...|+..|+++.+ .|+.|-..+...
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 34566788888899999999888887764 3556899999999999999999999988765 477777666554
Q ss_pred HHHH
Q 046194 668 VLSA 671 (934)
Q Consensus 668 ll~a 671 (934)
...+
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 4433
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=82.51 E-value=34 Score=32.08 Aligned_cols=138 Identities=12% Similarity=0.045 Sum_probs=84.5
Q ss_pred HHHHHHHHHHhCCCCCccchhHHHHHHHhcCChHHHHHHHHHhhhcccchhhhhhhhhhhhhHHHHHHHHHcCCCchhHH
Q 046194 215 LQQILAMVKKAGLLSDLYVGSALVSGFARLGNFYYARKIFEQMIQKNVVSMNGLMEGRRKGKEVHGYLIRSGLFDMVAVG 294 (934)
Q Consensus 215 a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~ 294 (934)
..+.++.+.+.++.|+...|..+++.+.+.|++.....+++-=.-+|. +.+--.++..|- .++.++
T Consensus 13 llEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DS-------------k~lA~~LLs~~~-~~~~~~ 78 (167)
T PF07035_consen 13 LLEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDS-------------KPLACQLLSLGN-QYPPAY 78 (167)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCc-------------HHHHHHHHHhHc-cChHHH
Confidence 345666667789999999999999999999998887777665333221 111111111111 011112
Q ss_pred HHHHHHhhccCChhHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCchH
Q 046194 295 NGLVNMYAKCGTIDDSRSVFRFMIGKDSVSWNTMISGLDQNGCYEEAIMNFCAMRRDGLMSSNFSLISTLSSCASLGWIM 374 (934)
Q Consensus 295 ~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~ 374 (934)
.-|.+.+.++. ..+..++..+...|++-+|+++.+.... .+......++.+..+.+|..
T Consensus 79 -------------Ql~lDMLkRL~----~~~~~iievLL~~g~vl~ALr~ar~~~~----~~~~~~~~fLeAA~~~~D~~ 137 (167)
T PF07035_consen 79 -------------QLGLDMLKRLG----TAYEEIIEVLLSKGQVLEALRYARQYHK----VDSVPARKFLEAAANSNDDQ 137 (167)
T ss_pred -------------HHHHHHHHHhh----hhHHHHHHHHHhCCCHHHHHHHHHHcCC----cccCCHHHHHHHHHHcCCHH
Confidence 22233333322 2456677778888888888888877532 23334466778887777777
Q ss_pred HHHHHHHHHhhhC
Q 046194 375 LGQQIHGEGLKLG 387 (934)
Q Consensus 375 ~a~~i~~~~~~~g 387 (934)
.-..++....+.+
T Consensus 138 lf~~V~~ff~~~n 150 (167)
T PF07035_consen 138 LFYAVFRFFEERN 150 (167)
T ss_pred HHHHHHHHHHHhh
Confidence 7777777666544
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.44 E-value=7.2 Score=37.53 Aligned_cols=100 Identities=15% Similarity=0.217 Sum_probs=69.5
Q ss_pred HHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhhcCChHHHHHHHHhC-CCCCC--HHHHHHHHHHHHhccCCC
Q 046194 672 CSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGRAGELDKIEEFINKM-PITPN--SLIWRTVLGACCRANCRK 747 (934)
Q Consensus 672 ~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p~--~~~~~~ll~~~~~~~~~~ 747 (934)
|-..|.+.-|..=|.+... +.|+ +..||.|.--|..+|+++.|.+.|+.. .+.|. ....|-=+.- .-- |+
T Consensus 75 YDSlGL~~LAR~DftQaLa---i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~-YY~--gR 148 (297)
T COG4785 75 YDSLGLRALARNDFSQALA---IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL-YYG--GR 148 (297)
T ss_pred hhhhhHHHHHhhhhhhhhh---cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceee-eec--Cc
Confidence 4456777777777766654 7788 778999998899999999999999887 55553 2222222222 223 89
Q ss_pred cHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCC
Q 046194 748 TELGRKAANMLFEMEPQNAVNYVLLANMYASGG 780 (934)
Q Consensus 748 ~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g 780 (934)
.+.|.+-+.+..+-+|+||- .-.|+|....
T Consensus 149 ~~LAq~d~~~fYQ~D~~DPf---R~LWLYl~E~ 178 (297)
T COG4785 149 YKLAQDDLLAFYQDDPNDPF---RSLWLYLNEQ 178 (297)
T ss_pred hHhhHHHHHHHHhcCCCChH---HHHHHHHHHh
Confidence 99999999999999998863 2234554443
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=82.03 E-value=1.9 Score=28.47 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=13.2
Q ss_pred ccHHHHHHHHcCChHHHHHHHHHH
Q 046194 630 WNSMISGYARHGHGDKALTLFSQM 653 (934)
Q Consensus 630 ~~~li~~~~~~g~~~~A~~l~~~m 653 (934)
|+.|...|.+.|++++|+++|++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 445555556666666666666553
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=81.93 E-value=0.1 Score=48.26 Aligned_cols=82 Identities=13% Similarity=0.072 Sum_probs=48.0
Q ss_pred HHHhhccCchHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCccchHHHHHHHHhCCccHHHH
Q 046194 364 LSSCASLGWIMLGQQIHGEGLKLGLDSDVSVSNALLSLYADAGYLSRCLKVFFLMPEHDQVSWNSVIGAFADSEALVSEA 443 (934)
Q Consensus 364 l~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~~A 443 (934)
++.+.+.+.+......++.+.+.+...+....+.|+..|++.++.+...++++.... .-...++..+-+.|.+ +++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~-~~a 89 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLY-EEA 89 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSH-HHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchH-HHH
Confidence 344444444555555555555555556778888899999998877777777763322 3334555555555555 555
Q ss_pred HHHHHH
Q 046194 444 VKYYLD 449 (934)
Q Consensus 444 ~~l~~~ 449 (934)
.-++.+
T Consensus 90 ~~Ly~~ 95 (143)
T PF00637_consen 90 VYLYSK 95 (143)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 555443
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=81.60 E-value=7.5 Score=35.91 Aligned_cols=50 Identities=12% Similarity=0.201 Sum_probs=34.2
Q ss_pred CCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 046194 746 RKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMKEA 795 (934)
Q Consensus 746 ~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~ 795 (934)
++.+.++.++..+.-+.|..+..-..-++++...|+|.+|..+++.+.+.
T Consensus 24 ~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 24 GDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred CChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 56666666666666777777776667777777777777777776666544
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=81.55 E-value=38 Score=30.08 Aligned_cols=60 Identities=5% Similarity=0.014 Sum_probs=27.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhchhhHHHHHHHHHHHHHhCC
Q 046194 532 MISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVATLERGMEVHACGVRACL 592 (934)
Q Consensus 532 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~ 592 (934)
.+......|+-++--+++.++.. .-+|++..+..+..||.+.|+..++.+++..+-+.|+
T Consensus 92 ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 92 ALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 34444455555555555555443 2244455555555555555555555555555555443
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=80.93 E-value=38 Score=33.82 Aligned_cols=167 Identities=17% Similarity=0.087 Sum_probs=98.7
Q ss_pred HcCCCchhHHHHHHHHhh-ccCChhHHHHHHhcCCC----C---CcccHHHHHHHHHhCCChhHHHHHHHHHHHC---CC
Q 046194 285 SGLFDMVAVGNGLVNMYA-KCGTIDDSRSVFRFMIG----K---DSVSWNTMISGLDQNGCYEEAIMNFCAMRRD---GL 353 (934)
Q Consensus 285 ~g~~~~~~~~~~li~~~~-~~g~~~~A~~~f~~~~~----~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~ 353 (934)
++-+||+..-|..-+.-+ +...+++|+.-|.++.+ + .-.+.-.||..+.+.|++++.++.|.+|+.. .+
T Consensus 20 s~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAV 99 (440)
T KOG1464|consen 20 SNSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAV 99 (440)
T ss_pred cCCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence 455677776654433222 34578899999987743 2 2234567899999999999999999998642 22
Q ss_pred C--CChhhHHHHHHHhhccCchHHHHHHHHHHhhh-----CCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCC-----
Q 046194 354 M--SSNFSLISTLSSCASLGWIMLGQQIHGEGLKL-----GLDSDVSVSNALLSLYADAGYLSRCLKVFFLMPEH----- 421 (934)
Q Consensus 354 ~--p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~-----g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~----- 421 (934)
. -+..+.++++.-.+...+.+.-...++.-++. +-..=-.+-+.|...|...|.+....+++.++...
T Consensus 100 TrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~ed 179 (440)
T KOG1464|consen 100 TRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTED 179 (440)
T ss_pred hccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhcccc
Confidence 2 23456677777777666666555555433321 00011123345666666667666666666655320
Q ss_pred ----------CccchHHHHHHHHhCCccHHHHHHHHHHHHH
Q 046194 422 ----------DQVSWNSVIGAFADSEALVSEAVKYYLDMRR 452 (934)
Q Consensus 422 ----------~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~ 452 (934)
=...|..=|+.|....+. .+...+|++...
T Consensus 180 GedD~kKGtQLLEiYAlEIQmYT~qKnN-KkLK~lYeqalh 219 (440)
T KOG1464|consen 180 GEDDQKKGTQLLEIYALEIQMYTEQKNN-KKLKALYEQALH 219 (440)
T ss_pred CchhhhccchhhhhHhhHhhhhhhhccc-HHHHHHHHHHHH
Confidence 123455556666666665 555566665543
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=80.24 E-value=68 Score=32.17 Aligned_cols=258 Identities=11% Similarity=0.116 Sum_probs=147.6
Q ss_pred cCCHHHHHHHHHhhccC-CCcch-----HHHHHHHHHhcCChhHHHHHHHHHHHc---CC--CCCHhHHHHHHHHHhchh
Q 046194 507 CGEMDDCEKIFARMSER-RDEVS-----WNSMISGYIHNELLPKAMNLVWFMMQR---GQ--RLDHFTFATVLSACASVA 575 (934)
Q Consensus 507 ~g~~~~A~~~~~~~~~~-p~~~~-----~~~li~~~~~~g~~~~A~~l~~~m~~~---g~--~p~~~t~~~ll~a~~~~~ 575 (934)
..++++|..-|..+.+- |...- .-.+|..+.+.+++++.+..|.+|..- .+ .-+..+.++++...+...
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 45677888888877652 22223 345788888999999999888888542 11 234567777777766666
Q ss_pred hHHHHHHHHHHHHHh-----CCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCC--------CC-------cccccHHHH
Q 046194 576 TLERGMEVHACGVRA-----CLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPV--------RN-------VYSWNSMIS 635 (934)
Q Consensus 576 ~~~~a~~i~~~~~~~-----~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--------~~-------~~~~~~li~ 635 (934)
+.+.-..+++--.+. +-..=..+-+-|...|...|.+..-.+++.++.+ .| ...|..-|.
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ 199 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ 199 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence 655555555432221 1111112223466777777888777777776641 11 225667777
Q ss_pred HHHHcCChHHHHHHHHHHHHCC-CCCChhhHHHHHHHHH-----hhCcHHHHHHHHHHhHHhhCCCCCccc-----HHHH
Q 046194 636 GYARHGHGDKALTLFSQMKLDG-PLPDHVTFVGVLSACS-----HAGLVDEGFKHFKSMSQVYGLIPQLEQ-----FSCM 704 (934)
Q Consensus 636 ~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~-----~~g~~~~a~~~~~~m~~~~~~~p~~~~-----y~~l 704 (934)
.|-.+.+-.+-..+|++...-. --|-. ....+|+-|. +.|.+++|-.-|-+.-+.|.-.-++.- |-.|
T Consensus 200 mYT~qKnNKkLK~lYeqalhiKSAIPHP-lImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVL 278 (440)
T KOG1464|consen 200 MYTEQKNNKKLKALYEQALHIKSAIPHP-LIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVL 278 (440)
T ss_pred hhhhhcccHHHHHHHHHHHHhhccCCch-HHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHH
Confidence 8888888888888888876522 22333 3445666664 467788776544444343443333322 4455
Q ss_pred HHHHhhcC----ChHHHHHHHHhCCCCCCHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHH
Q 046194 705 VDLLGRAG----ELDKIEEFINKMPITPNSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLL 772 (934)
Q Consensus 705 i~~l~~~g----~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l 772 (934)
..++.+.| +-.+|.- .+..|.......|+.+|... +..+.+++.+.-..---+||-+-.++
T Consensus 279 ANMLmkS~iNPFDsQEAKP----yKNdPEIlAMTnlv~aYQ~N---dI~eFE~Il~~~~~~IM~DpFIReh~ 343 (440)
T KOG1464|consen 279 ANMLMKSGINPFDSQEAKP----YKNDPEILAMTNLVAAYQNN---DIIEFERILKSNRSNIMDDPFIREHI 343 (440)
T ss_pred HHHHHHcCCCCCcccccCC----CCCCHHHHHHHHHHHHHhcc---cHHHHHHHHHhhhccccccHHHHHHH
Confidence 66676666 1222210 12345566778899988654 55555554443333223344443333
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 62.9 bits (151), Expect = 5e-10
Identities = 24/173 (13%), Positives = 52/173 (30%), Gaps = 7/173 (4%)
Query: 563 TFATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLM 622
A +L +L+ +A L A ++ A +
Sbjct: 94 QLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVH 153
Query: 623 -------PVRNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHA 675
+ + +N+++ G+AR G + + + +K G PD +++ L
Sbjct: 154 HGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQ 213
Query: 676 GLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKMPITP 728
+ GL Q + ++ RA L + + + P
Sbjct: 214 DQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPP 266
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 61.4 bits (147), Expect = 1e-09
Identities = 27/261 (10%), Positives = 66/261 (25%), Gaps = 21/261 (8%)
Query: 550 WFMMQRGQRLDHFTFATVLSACASVATLERGMEV---HACGVRACLEFDVVIGSALVDMY 606
Q C L + H + + + +A++ +
Sbjct: 116 GQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGW 175
Query: 607 SKCGRIDYASRFFDLMPVR----NVYSWNSMISGYARHGHGDKAL-TLFSQMKLDGPLPD 661
++ G ++ ++ S+ + + R + QM +G
Sbjct: 176 ARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQ 235
Query: 662 HVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFI 721
+ +LS A ++ K + S L P + + D+ +
Sbjct: 236 ALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAK----------- 284
Query: 722 NKMPITPNSLIWRTVLGACCRANCRKTEL-GRKAANMLFEMEPQNAVNYVLLANMYASGG 780
++ L C EL R + + + +
Sbjct: 285 -DGRVSYPKLHLPLKTLQCLFEKQLHMELASRVCVVSVEKPTLPSKEVKHARKTLKTLRD 343
Query: 781 KWEDVAKARKAMKEAEVKKEA 801
+WE + +++E
Sbjct: 344 QWEKALCRALRETKNRLEREV 364
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 49.8 bits (117), Expect = 4e-06
Identities = 22/186 (11%), Positives = 54/186 (29%), Gaps = 7/186 (3%)
Query: 348 MRRDGLMSSNFSLISTLSSCASLGWIMLGQQI---HGEGLKLGLDSDVSVSNALLSLYAD 404
+ L L++ C + L + H + + + NA++ +A
Sbjct: 118 HSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWAR 177
Query: 405 AGYLSRCLKVFFLMPEH----DQVSWNSVIGAFADSEALVSEAVKYYLDMRRAGWSPNGV 460
G + V F++ + D +S+ + + + + M + G +
Sbjct: 178 QGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQAL 237
Query: 461 TFINILAAASSFSMGKLGHQVHAQVIKYNVANETTIENALLSCYGKCGEMDDCEKIFARM 520
+L+ ++ K H+V + LL K+ +
Sbjct: 238 FTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPL 297
Query: 521 SERRDE 526
+
Sbjct: 298 KTLQCL 303
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 46.0 bits (107), Expect = 6e-05
Identities = 17/155 (10%), Positives = 44/155 (28%), Gaps = 3/155 (1%)
Query: 404 DAGYLSRCLKVFFLMPEHDQVSWNSVIGAFADSEALVSEAVKYYLDMRRAGWSPNGVTFI 463
AG L C + P +Q++ S + + + +G + F
Sbjct: 75 MAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFF 134
Query: 464 NILAAASSFSMGKLGHQVHAQVIKYNVANETTIENALLSCYGKCGEMDDCEKIFARMSER 523
+ VH + + NA++ + + G + + + +
Sbjct: 135 KCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDA 194
Query: 524 R---DEVSWNSMISGYIHNELLPKAMNLVWFMMQR 555
D +S+ + + + + M +
Sbjct: 195 GLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQ 229
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 45.6 bits (106), Expect = 9e-05
Identities = 26/190 (13%), Positives = 61/190 (32%), Gaps = 16/190 (8%)
Query: 8 HLQILKHGFAYDVFLCNTLINVYVRVGDLASASKLFDEMPDR----NSVSWACIVSGYTH 63
H + + + N ++ + R G + + D + +S+A +
Sbjct: 153 HHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGR 212
Query: 64 KGMSNEAC-KMFKEMVRAGF---------LLNRYALGSVLRACQECGPSGFKFGMQVHCL 113
+ + ++M + G LL+ +VL+A + P+ F Q+
Sbjct: 213 QDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPT-FSLPPQLPPP 271
Query: 114 VLKSNQTFDGLVSNVLIAMYGSCLESTDCARRIFEEIETRDLISWNSIISVYSQRGDTIS 173
V S D + ++ L +++ +L S ++SV +
Sbjct: 272 VNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEKQLH-MELASRVCVVSVEKPTLPSKE 330
Query: 174 VFKLFSRMQR 183
V ++
Sbjct: 331 VKHARKTLKT 340
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 57.2 bits (137), Expect = 2e-08
Identities = 88/581 (15%), Positives = 172/581 (29%), Gaps = 176/581 (30%)
Query: 136 CLESTDCARRIFEEIETRDLISWNSIISVYSQRGDTISVFKLFSRMQREGFRY----SLK 191
C + D + I + E II T+ +F Q E + L+
Sbjct: 35 CKDVQDMPKSILSKEEIDH------IIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLR 88
Query: 192 PNEYTFGSLITAAYSSVLSGSYLLQQILAMVKKAGLLSDLYVGSALVSGFARLGNFYYAR 251
N Y F L+ I ++ +++ +Y + RL N
Sbjct: 89 IN-YKF----------------LMSPIKTEQRQPSMMTRMY-----IEQRDRLYN---DN 123
Query: 252 KIFEQMIQKNVVSM-------NGLMEGRR-KGKEVHGYLIRSGLFDMVAVGNG---LVNM 300
++F + NV + L+E R K + G + +G+G +
Sbjct: 124 QVFAKY---NVSRLQPYLKLRQALLELRPAKNVLIDG---------V--LGSGKTWVALD 169
Query: 301 YAKCGTIDDSRSVFRFMIGKDSVSWNTMISGLDQNGCYEEAIMNFCAMRRDGLMSSNFSL 360
+ + + W + N E ++ M
Sbjct: 170 -----VCLSYKVQCKM---DFKIFWLNL--K---NCNSPETVLE---------MLQKLLY 207
Query: 361 ISTLSSCASLGWIMLGQQIHGEGLKLGLDSDVSVSNALLSLYADAGYLSRCLKVFFLMPE 420
+ + + H +KL + S+ L L Y CL V L
Sbjct: 208 QIDPNWTS--------RSDHSSNIKLRIH---SIQAELRRLLKSKPY-ENCLLV--L--- 250
Query: 421 HDQVSWNS-VIGAF-------------ADSEALVSEAVKYY-LDMRRAGWSPNGVTFINI 465
V N+ AF ++ L + + LD +P+ V ++
Sbjct: 251 -LNV-QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV--KSL 306
Query: 466 LAAASSFSMGKLGHQV---HAQVIK---------------YNVANETTIENALLSCYGKC 507
L L +V + + + + N + + S
Sbjct: 307 LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL-NV 365
Query: 508 GEMDDCEKIFARMSERRDEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATV 567
E + K+F R+S I ++L+WF + + + V
Sbjct: 366 LEPAEYRKMFDRLSVFPPSAH----IP--------TILLSLIWFDVIKSDVMV------V 407
Query: 568 LSACASVATLERG-----MEVHACGVRACLEFD--VVIGSALVDMYSKCGRIDYASRFFD 620
++ + +E+ + + + + ++ + + ++VD Y I D
Sbjct: 408 VNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHY----NIPKTFDSDD 463
Query: 621 LMPVRN-VYSWNSMISGYARH----GHGDKALTLFSQMKLD 656
L+P Y + S I G+ H H ++ +TLF + LD
Sbjct: 464 LIPPYLDQY-FYSHI-GH--HLKNIEHPER-MTLFRMVFLD 499
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 54.5 bits (130), Expect = 2e-07
Identities = 77/603 (12%), Positives = 175/603 (29%), Gaps = 147/603 (24%)
Query: 386 LGLDSDVSVSNALLSLYADAGYLSRCLKVFFLMPEHDQVSWNSVIGAFADSEALVSEAVK 445
+ VS + L ++ F + E ++++ ++ + S +
Sbjct: 55 IMSKDAVSGTLRLFWTLLSKQ--EEMVQKF--VEEVLRINYKFLMSPIKTEQRQPSMMTR 110
Query: 446 YYLDMRRAGWSPNGVTFINILAAASSFSMGKLGHQVHAQVIKYNVANE---TTIENALLS 502
Y++ R ++ N F+ KYNV+ + ALL
Sbjct: 111 MYIEQRDRLYNDN-----------QVFA-------------KYNVSRLQPYLKLRQALLE 146
Query: 503 --------CYGK--CGE----MDDC--EKIFARMSERRDEVSWNSMISGYIHNELLPKAM 546
G G+ +D C K+ +M ++ W ++ + +L
Sbjct: 147 LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMD---FKIFWLNLKNCNSPETVLEMLQ 203
Query: 547 NLVWFMMQRGQRLDHFTFATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVDMY 606
L++ + + L + A L R ++ L V + + +
Sbjct: 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP-YENCLLVLLNVQNAKAWNAF 262
Query: 607 S-KCGRIDYASRFFDLMPVRNVYSWNSMISGYARH---GHGDKALT------LFSQ---M 653
+ C +I L+ R + + + H H LT L +
Sbjct: 263 NLSC-KI--------LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC 313
Query: 654 KLDGPLPDHVTFVGVLSACSHA----GLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLG 709
+ LP + ++ E + + + ++ + +++
Sbjct: 314 RPQD-LP--------REVLTTNPRRLSIIAESIRDGLATWDNW-KHVNCDKLTTIIES-- 361
Query: 710 RAGELDKIEE------------FINKMPITPN--SLIWRTVLGACCR--ANCRKTELGRK 753
L+ +E F I SLIW V+ + N +L +
Sbjct: 362 ---SLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVN----KLHKY 414
Query: 754 AANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMKEAEVKKEAGCSWVTMKD--- 810
+ L E +P+ + + + K E+ +++ + + S +
Sbjct: 415 S---LVEKQPKEST-ISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLD 470
Query: 811 -------GVHVFVAG-DESHPEKDLIYEKLKELNQKMRDAGYVPQTKFALFDLEPESKED 862
G H+ E +++ + L QK+R ++ + +
Sbjct: 471 QYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNT----LQQ 526
Query: 863 LVSYHSEKIAVAFVLTRNSKLPIR----IMKNLRVCG-DCHSAFKFISKIVGREIVLRDS 917
L Y + N R I+ L + + K+ + ++ I L
Sbjct: 527 LKFYKPY-------ICDNDPKYERLVNAILDFLPKIEENLICS-KY-TDLL--RIALMAE 575
Query: 918 NRF 920
+
Sbjct: 576 DEA 578
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 934 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.94 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.93 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.92 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.91 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.87 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.87 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.86 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.86 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.84 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.82 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.82 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.8 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.77 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.72 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.72 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.71 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.7 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.67 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.66 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.64 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.64 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.63 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.63 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.62 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.62 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.61 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.61 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.61 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.6 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.59 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.56 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.56 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.52 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.49 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.48 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.46 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.44 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.4 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.39 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.34 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.32 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.3 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.3 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.3 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.3 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.3 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.29 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.29 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.28 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.27 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.26 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.26 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.25 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.25 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.24 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.24 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.23 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.23 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.22 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.22 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.19 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.18 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.15 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.14 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.12 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.12 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.09 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.09 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.08 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.07 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.06 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.04 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.02 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 98.99 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 98.99 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 98.99 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 98.97 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 98.95 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 98.94 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.86 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 98.86 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 98.85 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.84 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.82 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.81 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 98.81 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.76 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.68 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.68 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.67 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.67 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.66 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.66 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.65 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.62 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.58 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.57 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.56 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.52 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.51 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.51 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.49 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.47 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.46 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.45 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.45 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.44 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.43 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.43 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.42 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.35 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.35 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.34 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.34 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.34 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.33 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.32 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.32 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.31 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.29 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.28 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.27 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.25 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.23 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.23 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.21 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.21 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.2 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.19 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.19 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.17 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.16 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.1 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.1 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.07 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.07 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.05 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.05 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.05 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.05 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.05 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.03 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.02 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 97.99 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 97.98 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 97.98 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 97.98 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 97.97 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.96 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.95 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 97.93 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 97.93 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 97.93 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 97.92 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 97.91 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.91 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 97.86 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.86 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 97.85 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 97.84 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 97.84 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 97.82 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 97.82 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 97.81 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 97.8 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 97.78 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.75 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 97.74 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.72 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.7 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 97.69 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 97.68 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.66 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 97.64 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.64 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.63 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 97.62 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 97.62 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 97.61 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.59 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.58 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.57 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.54 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.48 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.47 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.47 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.43 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.41 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.4 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.39 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 97.38 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.33 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.32 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.27 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.25 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.15 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.1 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 97.08 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.08 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.02 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.01 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 96.72 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 96.66 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 96.66 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 96.64 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.63 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.57 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 96.5 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.24 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 96.21 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 96.2 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 95.93 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 95.87 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 95.76 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 95.76 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 95.74 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 95.72 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 95.61 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 95.61 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.57 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 95.45 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 95.12 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 93.87 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 93.45 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 92.77 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 92.62 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 92.4 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 92.39 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 90.77 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 90.44 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 89.73 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 89.42 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 88.89 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 88.78 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 87.18 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 86.86 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 85.62 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 85.42 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 85.04 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 84.46 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 84.43 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 83.88 | |
| 2qx5_A | 661 | Nucleoporin NIC96; mRNA transport, nuclear pore co | 83.5 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 81.25 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 80.78 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-39 Score=379.51 Aligned_cols=481 Identities=8% Similarity=-0.037 Sum_probs=401.5
Q ss_pred HhhccCChhHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCchHHHHHH
Q 046194 300 MYAKCGTIDDSRSVFRFMIGKDSVSWNTMISGLDQNGCYEEAIMNFCAMRRDGLMSSNFSLISTLSSCASLGWIMLGQQI 379 (934)
Q Consensus 300 ~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i 379 (934)
.+.++|.+..+...|+.++.+++..|+.++..|.+.|++++|+.+|++|.. ..|+..++..+..++...|+++.|..+
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~ 139 (597)
T 2xpi_A 62 NTSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCL 139 (597)
T ss_dssp --------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHH
Confidence 356778888999999999989999999999999999999999999999985 568989999999999999999999999
Q ss_pred HHHHhhhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCC-------------------CccchHHHHHHHHhCCccH
Q 046194 380 HGEGLKLGLDSDVSVSNALLSLYADAGYLSRCLKVFFLMPEH-------------------DQVSWNSVIGAFADSEALV 440 (934)
Q Consensus 380 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~-------------------~~~~~~~li~~~~~~g~~~ 440 (934)
+..+... +++..+++.++.+|.++|++++|.++|+++... +..+|+.++.+|.+.|++
T Consensus 140 ~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~- 216 (597)
T 2xpi_A 140 LTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNF- 216 (597)
T ss_dssp HHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCH-
T ss_pred HHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCH-
Confidence 9988654 678899999999999999999999999965433 478999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCccc-HHHHHHHHhccCCchH--HHHH-HHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 046194 441 SEAVKYYLDMRRAGWSPNGVT-FINILAAASSFSMGKL--GHQV-HAQVIKYNVANETTIENALLSCYGKCGEMDDCEKI 516 (934)
Q Consensus 441 ~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~~~~~~--a~~i-~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 516 (934)
++|+++|++|.+.+ |+..+ +..+...+...+..+. +..+ +..+...+..+...+++.++.+|.+.|++++|.++
T Consensus 217 ~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 294 (597)
T 2xpi_A 217 DRAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDY 294 (597)
T ss_dssp HHHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHH
Confidence 99999999998854 44433 3333332222222111 1111 44445555556667788889999999999999999
Q ss_pred HHhhccC-CCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCc
Q 046194 517 FARMSER-RDEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVATLERGMEVHACGVRACLEFD 595 (934)
Q Consensus 517 ~~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~ 595 (934)
|+++... ++..+|+.++.+|.+.|++++|+++|+++...+ +.+..++..++.++...|++++|.++++.+.+.. +.+
T Consensus 295 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~ 372 (597)
T 2xpi_A 295 LSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEK 372 (597)
T ss_dssp HHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTS
T ss_pred HHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-ccc
Confidence 9999873 489999999999999999999999999999865 3377889999999999999999999999998653 457
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHhccCC---CCCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 046194 596 VVIGSALVDMYSKCGRIDYASRFFDLMP---VRNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSAC 672 (934)
Q Consensus 596 ~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 672 (934)
..+++.++.+|.++|++++|.++|+++. ..+..+|+.++.+|.+.|++++|+++|++|.+.+ +++..+|..++.+|
T Consensus 373 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 451 (597)
T 2xpi_A 373 AVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQH 451 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHH
Confidence 8899999999999999999999999875 3457799999999999999999999999999864 44688999999999
Q ss_pred HhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhC-------CCCCC--HHHHHHHHHHHHhc
Q 046194 673 SHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKM-------PITPN--SLIWRTVLGACCRA 743 (934)
Q Consensus 673 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m-------~~~p~--~~~~~~ll~~~~~~ 743 (934)
.+.|++++|.++|+++.+. .+.+..+|..++.+|.+.|++++|.++|+++ +..|+ ..+|..++.+|...
T Consensus 452 ~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~ 529 (597)
T 2xpi_A 452 MQLGNILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKL 529 (597)
T ss_dssp HHHTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHh
Confidence 9999999999999999874 3345889999999999999999999999988 45787 78999999999999
Q ss_pred cCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHHh
Q 046194 744 NCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 744 ~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 794 (934)
|++++|...++++++++|+++..|..++++|.+.|+|++|.+.++++.+
T Consensus 530 --g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 578 (597)
T 2xpi_A 530 --KMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLA 578 (597)
T ss_dssp --TCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999998875
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-38 Score=375.92 Aligned_cols=501 Identities=7% Similarity=-0.091 Sum_probs=339.6
Q ss_pred HhhhCCCChHHHHHHhhccCCCCcccHHHHHHHHHcCCCchHHHHHHHHHHHccCCCCCCCCceeHHHHHHHHhcCcccc
Q 046194 132 MYGSCLESTDCARRIFEEIETRDLISWNSIISVYSQRGDTISVFKLFSRMQREGFRYSLKPNEYTFGSLITAAYSSVLSG 211 (934)
Q Consensus 132 ~y~~~~g~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~p~~~t~~~ll~a~~~~~~~~ 211 (934)
.+.++ |....++..|+.++.+++..|+.++.+|.+.|++++|+.+|++|... .||..++
T Consensus 62 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~------~p~~~~~-------------- 120 (597)
T 2xpi_A 62 NTSTD-GSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI------TGNPNDA-------------- 120 (597)
T ss_dssp ---------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------HCCHHHH--------------
T ss_pred ccccc-CccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh------CCCchHH--------------
Confidence 35667 88899999999999999999999999999999999999999999854 4554444
Q ss_pred chHHHHHHHHHHHhCCCCCccchhHHHHHHHhcCChHHHHHHHHHhhhcccchhhhhhhhhhhhhHHHHHHHHHcCCCch
Q 046194 212 SYLLQQILAMVKKAGLLSDLYVGSALVSGFARLGNFYYARKIFEQMIQKNVVSMNGLMEGRRKGKEVHGYLIRSGLFDMV 291 (934)
Q Consensus 212 ~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~ 291 (934)
..++.+|.+.|++++|..+|+++.. ..+++
T Consensus 121 -----------------------~~l~~~~~~~g~~~~A~~~~~~~~~---------------------------~~~~~ 150 (597)
T 2xpi_A 121 -----------------------FWLAQVYCCTGDYARAKCLLTKEDL---------------------------YNRSS 150 (597)
T ss_dssp -----------------------HHHHHHHHHTTCHHHHHHHHHHTCG---------------------------GGTCH
T ss_pred -----------------------HHHHHHHHHcCcHHHHHHHHHHHhc---------------------------cccch
Confidence 4455666777777778887777642 13566
Q ss_pred hHHHHHHHHhhccCChhHHHHHHhcCCCC-------------------CcccHHHHHHHHHhCCChhHHHHHHHHHHHCC
Q 046194 292 AVGNGLVNMYAKCGTIDDSRSVFRFMIGK-------------------DSVSWNTMISGLDQNGCYEEAIMNFCAMRRDG 352 (934)
Q Consensus 292 ~~~~~li~~~~~~g~~~~A~~~f~~~~~~-------------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 352 (934)
.+++.++.+|.++|++++|.++|+++... +..+|+.++.+|.+.|++++|+++|++|.+.
T Consensus 151 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 229 (597)
T 2xpi_A 151 ACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMV- 229 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 67778888888888888888888854332 4789999999999999999999999999885
Q ss_pred CCCChhhHHHHHHHhhccCchHH---HHHH-HHHHhhhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC--CCccch
Q 046194 353 LMSSNFSLISTLSSCASLGWIML---GQQI-HGEGLKLGLDSDVSVSNALLSLYADAGYLSRCLKVFFLMPE--HDQVSW 426 (934)
Q Consensus 353 ~~p~~~t~~~ll~a~~~~~~~~~---a~~i-~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~~~~~~ 426 (934)
.|+..+....+..+........ +..+ +..+...+..+...+++.++.+|.+.|++++|.++|+++.+ ++..+|
T Consensus 230 -~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 308 (597)
T 2xpi_A 230 -DAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLL 308 (597)
T ss_dssp -CTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHH
T ss_pred -CchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHH
Confidence 4554443333333322222211 1121 44445555556667788889999999999999999999987 789999
Q ss_pred HHHHHHHHhCCccHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhcCCCchhHHHHHHHHHHh
Q 046194 427 NSVIGAFADSEALVSEAVKYYLDMRRAGWSPNGVTFINILAAASSFSMGKLGHQVHAQVIKYNVANETTIENALLSCYGK 506 (934)
Q Consensus 427 ~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~ 506 (934)
+.++.+|.+.|++ ++|+++|+++.+.+. .+..++..++.++...|+.++|.+++..+.+.. +.+..+++.++.+|.+
T Consensus 309 ~~l~~~~~~~g~~-~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 385 (597)
T 2xpi_A 309 LCKADTLFVRSRF-IDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLC 385 (597)
T ss_dssp HHHHHHHHHTTCH-HHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCH-HHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHH
Confidence 9999999999999 999999999987652 255566555555555555555555555544321 2234444444444444
Q ss_pred cCCHHHHHHHHHhhccC-C-CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhchhhHHHHHHHH
Q 046194 507 CGEMDDCEKIFARMSER-R-DEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVATLERGMEVH 584 (934)
Q Consensus 507 ~g~~~~A~~~~~~~~~~-p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~ 584 (934)
+|++++|.++|+++.+. | +..+|+.++.+|.+.|++++|+++|++|...+
T Consensus 386 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---------------------------- 437 (597)
T 2xpi_A 386 VNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF---------------------------- 437 (597)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT----------------------------
T ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----------------------------
Confidence 44444444444444321 1 33344444444444444444444444443321
Q ss_pred HHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCCCCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhh
Q 046194 585 ACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPVRNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVT 664 (934)
Q Consensus 585 ~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 664 (934)
..+..+|+.++.+|.+.|++++|+++|++|.+.. +.+..+
T Consensus 438 ---------------------------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~ 477 (597)
T 2xpi_A 438 ---------------------------------------QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLL 477 (597)
T ss_dssp ---------------------------------------TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHH
T ss_pred ---------------------------------------ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHH
Confidence 1244566666666777777777777777777643 334667
Q ss_pred HHHHHHHHHhhCcHHHHHHHHHHhHHhh---CCCCC--cccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHH
Q 046194 665 FVGVLSACSHAGLVDEGFKHFKSMSQVY---GLIPQ--LEQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVL 737 (934)
Q Consensus 665 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~p~--~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll 737 (934)
|..++..|.+.|++++|.++|+++.+.. +..|+ ..+|..++.+|.+.|++++|.+.++++ ...| +..+|..+.
T Consensus 478 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 557 (597)
T 2xpi_A 478 LNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIA 557 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 7777778888888888888888776632 55676 678888888888888888888888887 3344 788999999
Q ss_pred HHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHc
Q 046194 738 GACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYAS 778 (934)
Q Consensus 738 ~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~ 778 (934)
..|... |+.++|...++++++++|+++..|..|+++|..
T Consensus 558 ~~~~~~--g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 558 LVYLHK--KIPGLAITHLHESLAISPNEIMASDLLKRALEE 596 (597)
T ss_dssp HHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred HHHHHh--CCHHHHHHHHHHHHhcCCCChHHHHHHHHHHhc
Confidence 999999 999999999999999999999999999998753
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.94 E-value=2.4e-26 Score=259.08 Aligned_cols=198 Identities=13% Similarity=0.190 Sum_probs=169.0
Q ss_pred HHHHHHhhccC---C-CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhch---------hhHHH
Q 046194 513 CEKIFARMSER---R-DEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASV---------ATLER 579 (934)
Q Consensus 513 A~~~~~~~~~~---p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~---------~~~~~ 579 (934)
+..+++.+.++ + ....++.+|.+|++.|+.++|+++|++|.+.|++||..||+++|.+|+.. +.++.
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 34444555443 1 23457888999999999999999999999999999999999999999754 45788
Q ss_pred HHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCC----CCCcccccHHHHHHHHcCChHHHHHHHHHHHH
Q 046194 580 GMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMP----VRNVYSWNSMISGYARHGHGDKALTLFSQMKL 655 (934)
Q Consensus 580 a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 655 (934)
|.++|++|.+.|+.||..+||+||.+|++.|++++|.++|++|. .||..+||+||.+|++.|+.++|.++|++|.+
T Consensus 89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999886 57999999999999999999999999999999
Q ss_pred CCCCCChhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhc
Q 046194 656 DGPLPDHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRA 711 (934)
Q Consensus 656 ~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~ 711 (934)
.|+.||..||++||.+|++.|++++|.++|++|.+. +..|+..+|+.+++.+++.
T Consensus 169 ~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 169 SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHSH
T ss_pred cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999885 9999999999999988764
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.4e-25 Score=252.90 Aligned_cols=214 Identities=15% Similarity=0.126 Sum_probs=161.8
Q ss_pred HHHHHHHHHHCCCCCCh-hhHHHHHHHhhccCchHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCC
Q 046194 341 AIMNFCAMRRDGLMSSN-FSLISTLSSCASLGWIMLGQQIHGEGLKLGLDSDVSVSNALLSLYADAGYLSRCLKVFFLMP 419 (934)
Q Consensus 341 A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~ 419 (934)
+..+.+++.+.++.+.+ ..++.+|.+|++.|++++|.++|+.|.+.|+.||..+||+||.+|++.+...++
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~-------- 80 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES-------- 80 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS--------
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh--------
Confidence 33444555555554433 345566666666666666666666666666666666777777666666543221
Q ss_pred CCCccchHHHHHHHHhCCccHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhcCCCchhHHHH
Q 046194 420 EHDQVSWNSVIGAFADSEALVSEAVKYYLDMRRAGWSPNGVTFINILAAASSFSMGKLGHQVHAQVIKYNVANETTIENA 499 (934)
Q Consensus 420 ~~~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~ 499 (934)
.+.+.. ++|.++|++|...|+.||..||+++|.+|++.|+++.|.+++..|.+.|+.||..+||+
T Consensus 81 --------------~~~~~l-~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~ 145 (501)
T 4g26_A 81 --------------SPNPGL-SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGP 145 (501)
T ss_dssp --------------SCCHHH-HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred --------------hhcchH-HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehH
Confidence 123344 89999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHhhccC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhchhh
Q 046194 500 LLSCYGKCGEMDDCEKIFARMSER---RDEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVAT 576 (934)
Q Consensus 500 li~~~~~~g~~~~A~~~~~~~~~~---p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 576 (934)
||.+|++.|++++|.++|++|.+. ||..+|++||.+|++.|+.++|.++|++|++.|..|+..||+.++..++..+.
T Consensus 146 lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~~a 225 (501)
T 4g26_A 146 ALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSEVA 225 (501)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcCcc
Confidence 999999999999999999999875 89999999999999999999999999999999999999999999888877554
Q ss_pred H
Q 046194 577 L 577 (934)
Q Consensus 577 ~ 577 (934)
.
T Consensus 226 ~ 226 (501)
T 4g26_A 226 T 226 (501)
T ss_dssp H
T ss_pred h
Confidence 3
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.92 E-value=1.7e-22 Score=223.94 Aligned_cols=370 Identities=11% Similarity=0.045 Sum_probs=257.2
Q ss_pred HhhccCchHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC---CCccchHHHHHHHHhCCccHHH
Q 046194 366 SCASLGWIMLGQQIHGEGLKLGLDSDVSVSNALLSLYADAGYLSRCLKVFFLMPE---HDQVSWNSVIGAFADSEALVSE 442 (934)
Q Consensus 366 a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~~ 442 (934)
.+...|+++.|.+.+..+.+.. +.+...+..+...+...|++++|...++.... .+..+|..+...|.+.|++ ++
T Consensus 8 ~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~-~~ 85 (388)
T 1w3b_A 8 REYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL-QE 85 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH-HH
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCH-HH
Confidence 3445666677766666665543 22334455555666666666666666554432 2444566666666666666 66
Q ss_pred HHHHHHHHHHcCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhcc
Q 046194 443 AVKYYLDMRRAGWSPNGVTFINILAAASSFSMGKLGHQVHAQVIKYNVANETTIENALLSCYGKCGEMDDCEKIFARMSE 522 (934)
Q Consensus 443 A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 522 (934)
|+..|+++.+. .|+ +...+..+...|.+.|++++|.+.|+++..
T Consensus 86 A~~~~~~al~~--~p~----------------------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 129 (388)
T 1w3b_A 86 AIEHYRHALRL--KPD----------------------------------FIDGYINLAAALVAAGDMEGAVQAYVSALQ 129 (388)
T ss_dssp HHHHHHHHHHH--CTT----------------------------------CHHHHHHHHHHHHHHSCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHc--Ccc----------------------------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66666665543 222 223345555555666666666666655544
Q ss_pred C-CC-cchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHH
Q 046194 523 R-RD-EVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVATLERGMEVHACGVRACLEFDVVIGS 600 (934)
Q Consensus 523 ~-p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~ 600 (934)
. |+ ...+..+...+...|++++|.+.|+++.... +-+..++..+...+...|++++|...++.+++... .+...+.
T Consensus 130 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~ 207 (388)
T 1w3b_A 130 YNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYI 207 (388)
T ss_dssp HCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHH
T ss_pred hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHH
Confidence 2 32 3344555555566666666666666665531 12345555666666666666666666666665432 2456677
Q ss_pred HHHHHHHhcCCHHHHHHHhccCC--CC-CcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhC
Q 046194 601 ALVDMYSKCGRIDYASRFFDLMP--VR-NVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPD-HVTFVGVLSACSHAG 676 (934)
Q Consensus 601 ~li~~y~~~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g 676 (934)
.+...+...|++++|...|++.. .| +..+|..+...|...|++++|++.|+++.+. .|+ ..++..+..++.+.|
T Consensus 208 ~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g 285 (388)
T 1w3b_A 208 NLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKG 285 (388)
T ss_dssp HHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcC
Confidence 77888888888888888887664 23 4668888999999999999999999999984 455 567888888999999
Q ss_pred cHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCcHHHHHH
Q 046194 677 LVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCRANCRKTELGRKA 754 (934)
Q Consensus 677 ~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~ 754 (934)
++++|.+.|+++.+. .+++...|..+..++.+.|++++|.+.++++ ...| +..+|..+...+... |+.++|...
T Consensus 286 ~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~--g~~~~A~~~ 361 (388)
T 1w3b_A 286 SVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQ--GKLQEALMH 361 (388)
T ss_dssp CHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTT--TCCHHHHHH
T ss_pred CHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc--CCHHHHHHH
Confidence 999999999999874 3445788999999999999999999999987 5555 477889999999998 999999999
Q ss_pred HHHHHhcCCCCCchHHHHHHHHHcCCC
Q 046194 755 ANMLFEMEPQNAVNYVLLANMYASGGK 781 (934)
Q Consensus 755 ~~~~~~~~p~~~~~y~~l~~~~~~~g~ 781 (934)
++++++++|+++..|..++.+|...|+
T Consensus 362 ~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 362 YKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 999999999999999999999887764
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.91 E-value=8.4e-22 Score=218.43 Aligned_cols=350 Identities=12% Similarity=0.091 Sum_probs=294.0
Q ss_pred HHHHhCCccHHHHHHHHHHHHHcCCCCCcc-cHHHHHHHHhccCCchHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCC
Q 046194 431 GAFADSEALVSEAVKYYLDMRRAGWSPNGV-TFINILAAASSFSMGKLGHQVHAQVIKYNVANETTIENALLSCYGKCGE 509 (934)
Q Consensus 431 ~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~ 509 (934)
..+.+.|++ ++|++.+.++.+. .|+.. .+..+...+...|+++.+...+...++.. +.+...+..+...|.+.|+
T Consensus 7 ~~~~~~g~~-~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 7 HREYQAGDF-EAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHTCH-HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHCCCH-HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 345566776 7777777776654 34433 34444555666777888877777766643 4567788999999999999
Q ss_pred HHHHHHHHHhhccC-C-CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH-hHHHHHHHHHhchhhHHHHHHHHHH
Q 046194 510 MDDCEKIFARMSER-R-DEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDH-FTFATVLSACASVATLERGMEVHAC 586 (934)
Q Consensus 510 ~~~A~~~~~~~~~~-p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~a~~i~~~ 586 (934)
+++|...|+++... | +..+|..+..++.+.|++++|++.|.++... .|+. ..+..+...+...|++++|.+.+..
T Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 99999999998763 5 4557999999999999999999999999885 4654 4566677788889999999999999
Q ss_pred HHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCC--C-CcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-h
Q 046194 587 GVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPV--R-NVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPD-H 662 (934)
Q Consensus 587 ~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~ 662 (934)
+++.. +.+..+++.+...|.+.|++++|...|+++.. | +...|..+...+...|++++|+..|++..+. .|+ .
T Consensus 161 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~ 237 (388)
T 1w3b_A 161 AIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNHA 237 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTCH
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCCH
Confidence 98863 23678899999999999999999999998863 3 4558888999999999999999999999884 565 6
Q ss_pred hhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHH
Q 046194 663 VTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGRAGELDKIEEFINKM-P-ITPNSLIWRTVLGA 739 (934)
Q Consensus 663 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m-~-~~p~~~~~~~ll~~ 739 (934)
.++..+..++...|++++|.+.|+.+.+ +.|+ ...|..++.+|.+.|++++|.+.++++ . .+++..+|..+...
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 314 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIE---LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANI 314 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH---TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHH
Confidence 7888899999999999999999999987 3454 778999999999999999999999988 3 34568899999999
Q ss_pred HHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHHh
Q 046194 740 CCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 740 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 794 (934)
+... |+.++|...+++++++.|+++..+..++.+|.+.|++++|.+.++++.+
T Consensus 315 ~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 315 KREQ--GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHTT--TCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHc--CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999 9999999999999999999999999999999999999999999998874
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1.2e-16 Score=189.04 Aligned_cols=380 Identities=9% Similarity=0.046 Sum_probs=281.2
Q ss_pred HHHHHHHhhccCchHHHHHHHHHHhhhC--CCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCccchHHHHHHHHhCC
Q 046194 360 LISTLSSCASLGWIMLGQQIHGEGLKLG--LDSDVSVSNALLSLYADAGYLSRCLKVFFLMPEHDQVSWNSVIGAFADSE 437 (934)
Q Consensus 360 ~~~ll~a~~~~~~~~~a~~i~~~~~~~g--~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g 437 (934)
.....+++...|...++.++++.++-.+ +..+....+.|+.+..+. +..+......+...-+ ...+...+.+.|
T Consensus 988 Vs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Iai~lg 1063 (1630)
T 1xi4_A 988 VSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIAISNE 1063 (1630)
T ss_pred hHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHHHhCC
Confidence 3445666667777777777777776332 123445566666666665 4455555555544222 344666777888
Q ss_pred ccHHHHHHHHHHHHHcCCCCCcccHHHHHHHHh-ccCCchHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 046194 438 ALVSEAVKYYLDMRRAGWSPNGVTFINILAAAS-SFSMGKLGHQVHAQVIKYNVANETTIENALLSCYGKCGEMDDCEKI 516 (934)
Q Consensus 438 ~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~-~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 516 (934)
.+ ++|..+|++.. .+...+..+. ..++++.|.++...+ .++.+|..+..++.+.|++++|.+.
T Consensus 1064 ly-EEAf~IYkKa~---------~~~~A~~VLie~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIds 1127 (1630)
T 1xi4_A 1064 LF-EEAFAIFRKFD---------VNTSAVQVLIEHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDS 1127 (1630)
T ss_pred CH-HHHHHHHHHcC---------CHHHHHHHHHHHHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 88 88888888741 1222222222 667777777777654 3467888999999999999999999
Q ss_pred HHhhccCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCcH
Q 046194 517 FARMSERRDEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVATLERGMEVHACGVRACLEFDV 596 (934)
Q Consensus 517 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~ 596 (934)
|.+. . |...|..++..+.+.|++++|++.|...++.. ++....+.+..+|++.++++....+. + .++.
T Consensus 1128 YiKA--d-D~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ 1195 (1630)
T 1xi4_A 1128 YIKA--D-DPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNN 1195 (1630)
T ss_pred HHhc--C-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCH
Confidence 9664 3 77888889999999999999999998777654 33333335788888888887544332 2 3355
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHhccCCCCCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhC
Q 046194 597 VIGSALVDMYSKCGRIDYASRFFDLMPVRNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAG 676 (934)
Q Consensus 597 ~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g 676 (934)
..+..+.+.|...|++++|...|... ..|..+..+|.+.|++++|++.+++. .+..+|..+-.+|...|
T Consensus 1196 ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~ 1264 (1630)
T 1xi4_A 1196 AHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGK 1264 (1630)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhh
Confidence 56667889999999999999999885 48999999999999999999999876 34578888889999999
Q ss_pred cHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhccCCCcHHHHHH
Q 046194 677 LVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKM-PITPN-SLIWRTVLGACCRANCRKTELGRKA 754 (934)
Q Consensus 677 ~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~~~a~~~ 754 (934)
.+..|...... +.-++..+..++..|.+.|.+++|+.+++.. +++|. ...|.-|.-.+.+...+++.++.+.
T Consensus 1265 Ef~LA~~cgl~------Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~ 1338 (1630)
T 1xi4_A 1265 EFRLAQMCGLH------IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLEL 1338 (1630)
T ss_pred HHHHHHHHHHh------hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 99999886543 3346677889999999999999999999876 66654 4467666666666655788888888
Q ss_pred HHHHHhcCC-----CCCchHHHHHHHHHcCCChHHHHHH
Q 046194 755 ANMLFEMEP-----QNAVNYVLLANMYASGGKWEDVAKA 788 (934)
Q Consensus 755 ~~~~~~~~p-----~~~~~y~~l~~~~~~~g~~~~a~~~ 788 (934)
+.....+.| ++...|.-++-+|.+.|+|+.|..+
T Consensus 1339 f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~t 1377 (1630)
T 1xi4_A 1339 FWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 1377 (1630)
T ss_pred HHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 888888877 7888999999999999999999854
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.87 E-value=3.2e-20 Score=214.11 Aligned_cols=439 Identities=10% Similarity=-0.010 Sum_probs=240.1
Q ss_pred cHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCchHHHHHHHHHHhhhCCCCchhHHHHHHHHHH
Q 046194 324 SWNTMISGLDQNGCYEEAIMNFCAMRRDGLMSSNFSLISTLSSCASLGWIMLGQQIHGEGLKLGLDSDVSVSNALLSLYA 403 (934)
Q Consensus 324 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~ 403 (934)
.|......+.+.|++++|+..|+++.+.+ ||..++..+..++...|+++.|...+..+++.. +.+...+..+..+|.
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHH
Confidence 34555566667777777777777776643 566666666666666777777777776666654 334556677777777
Q ss_pred hcCChHHHHHHHhhCCC---CCccchHHHHHHHHhCCccHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhccCCchHHHH
Q 046194 404 DAGYLSRCLKVFFLMPE---HDQVSWNSVIGAFADSEALVSEAVKYYLDMRRAGWSPNGVTFINILAAASSFSMGKLGHQ 480 (934)
Q Consensus 404 ~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~ 480 (934)
+.|++++|...|+++.. .+......++..+...... ..+.+.+..+...+..|+...+..-...............
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAM-SKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHH-HHHTTC---------------------------CCCCHHH
T ss_pred HHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 77777777777766533 2223333333333332222 3333333322222222222211111100011111111111
Q ss_pred HHHHHHHhcC---------CCchhHHHHHHHHHHh---cCCHHHHHHHHHhhcc--------CC--------CcchHHHH
Q 046194 481 VHAQVIKYNV---------ANETTIENALLSCYGK---CGEMDDCEKIFARMSE--------RR--------DEVSWNSM 532 (934)
Q Consensus 481 i~~~~~~~g~---------~~~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~--------~p--------~~~~~~~l 532 (934)
+...+..... +.+...+..+...+.. .|++++|...|+++.. .| +...|..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 1111111000 1112333333333333 6777777777766554 11 23456666
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCH
Q 046194 533 ISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRI 612 (934)
Q Consensus 533 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~ 612 (934)
...+...|++++|+..|+++.... |+...+..+...+...|+++.|...+..+.+.. +.+..++..+...|...|++
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 320 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNY 320 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCT
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCH
Confidence 667777777777777777776643 335566666666667777777777776666542 22455666666677777777
Q ss_pred HHHHHHhccCC---CCCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHHHHHHHHhH
Q 046194 613 DYASRFFDLMP---VRNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGFKHFKSMS 689 (934)
Q Consensus 613 ~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 689 (934)
++|...|+... ..+..+|..+...|...|++++|+..|+++.+.. +.+..++..+...+...|++++|...|+.+.
T Consensus 321 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 399 (514)
T 2gw1_A 321 DQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAI 399 (514)
T ss_dssp THHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 77777776553 2244566666667777777777777777766642 2234556666666777777777777777665
Q ss_pred HhhCCCCC----cccHHHHHHHHhh---cCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHh
Q 046194 690 QVYGLIPQ----LEQFSCMVDLLGR---AGELDKIEEFINKM-PITP-NSLIWRTVLGACCRANCRKTELGRKAANMLFE 760 (934)
Q Consensus 690 ~~~~~~p~----~~~y~~li~~l~~---~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~ 760 (934)
+...-.|+ ...|..+...+.+ .|++++|.+.++++ ...| +..+|..+...+... |+.+.|...++++++
T Consensus 400 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~--g~~~~A~~~~~~a~~ 477 (514)
T 2gw1_A 400 ELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQ--EDIDEAITLFEESAD 477 (514)
T ss_dssp HHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred HhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHh--cCHHHHHHHHHHHHH
Confidence 53222222 2266667777777 77777777777665 2233 455666666666666 777777777777777
Q ss_pred cCCCCCchHHHH
Q 046194 761 MEPQNAVNYVLL 772 (934)
Q Consensus 761 ~~p~~~~~y~~l 772 (934)
++|+++..+..+
T Consensus 478 ~~~~~~~~~~~~ 489 (514)
T 2gw1_A 478 LARTMEEKLQAI 489 (514)
T ss_dssp HCSSHHHHHHHH
T ss_pred hccccHHHHHHH
Confidence 777665555444
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.86 E-value=6.8e-20 Score=207.45 Aligned_cols=316 Identities=10% Similarity=0.071 Sum_probs=213.4
Q ss_pred chHHHHHHHHhCCccHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 046194 425 SWNSVIGAFADSEALVSEAVKYYLDMRRAGWSPNGVTFINILAAASSFSMGKLGHQVHAQVIKYNVANETTIENALLSCY 504 (934)
Q Consensus 425 ~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~ 504 (934)
.|..+...+.+.|++ ++|+.+|+++.+.. +.+...+..+..++...|+++.|...+..+++.+ +.+...+..+..+|
T Consensus 28 ~~~~~~~~~~~~g~~-~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 104 (450)
T 2y4t_A 28 KHLELGKKLLAAGQL-ADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLL 104 (450)
T ss_dssp HHHHHHHHHHHTTCH-HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCH-HHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHH
Confidence 344444444444444 55555555544321 1122233333333333333333333333333322 12234455666666
Q ss_pred HhcCCHHHHHHHHHhhccC-CC-c---chHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhchhhHHH
Q 046194 505 GKCGEMDDCEKIFARMSER-RD-E---VSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVATLER 579 (934)
Q Consensus 505 ~~~g~~~~A~~~~~~~~~~-p~-~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~ 579 (934)
.+.|++++|...|+++... |+ . ..|..++..+...+ +......+...|++++
T Consensus 105 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----------------------~~~~a~~~~~~~~~~~ 161 (450)
T 2y4t_A 105 LKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQR-----------------------LRSQALNAFGSGDYTA 161 (450)
T ss_dssp HHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHTCHHH
T ss_pred HHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHcCCHHH
Confidence 6666666666666666553 22 2 34444433311111 1111223455666666
Q ss_pred HHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCC---CCcccccHHHHHHHHcCChHHHHHHHHHHHHC
Q 046194 580 GMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPV---RNVYSWNSMISGYARHGHGDKALTLFSQMKLD 656 (934)
Q Consensus 580 a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 656 (934)
|...++.+.+.. +.+..++..+..+|.+.|++++|.+.|+.+.. .+..+|..+...|...|++++|+..|+++.+
T Consensus 162 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~- 239 (450)
T 2y4t_A 162 AIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLK- 239 (450)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-
Confidence 666666666542 23667788888999999999999999988763 4677899999999999999999999999987
Q ss_pred CCCCChhh-HHHH------------HHHHHhhCcHHHHHHHHHHhHHhhCCCCC-----cccHHHHHHHHhhcCChHHHH
Q 046194 657 GPLPDHVT-FVGV------------LSACSHAGLVDEGFKHFKSMSQVYGLIPQ-----LEQFSCMVDLLGRAGELDKIE 718 (934)
Q Consensus 657 g~~p~~~t-~~~l------------l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~y~~li~~l~~~g~~~~A~ 718 (934)
..|+... +..+ ...|.+.|++++|..+|+.+.+. .|+ ..+|..++.++.+.|++++|.
T Consensus 240 -~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~A~ 315 (450)
T 2y4t_A 240 -LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVEAI 315 (450)
T ss_dssp -HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred -hCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 4566444 3333 67899999999999999999874 455 458899999999999999999
Q ss_pred HHHHhC-CCCC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHH
Q 046194 719 EFINKM-PITP-NSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLAN 774 (934)
Q Consensus 719 ~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~ 774 (934)
+.++++ ...| +..+|..+..+|... |+++.|...++++++++|+++..+..++.
T Consensus 316 ~~~~~a~~~~p~~~~~~~~l~~~~~~~--~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 371 (450)
T 2y4t_A 316 RVCSEVLQMEPDNVNALKDRAEAYLIE--EMYDEAIQDYETAQEHNENDQQIREGLEK 371 (450)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHTTSSSCHHHHHHHHH
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 999987 4455 688999999999999 99999999999999999999999999993
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.86 E-value=8.3e-20 Score=210.58 Aligned_cols=424 Identities=9% Similarity=-0.071 Sum_probs=314.2
Q ss_pred HHHHHHHhhccCchHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC---CCccchHHHHHHHHhC
Q 046194 360 LISTLSSCASLGWIMLGQQIHGEGLKLGLDSDVSVSNALLSLYADAGYLSRCLKVFFLMPE---HDQVSWNSVIGAFADS 436 (934)
Q Consensus 360 ~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~ 436 (934)
+...-..+...|+++.|...+..+++.. |+...+..+..+|.+.|++++|...|+++.+ .+..+|..+...|.+.
T Consensus 9 ~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 86 (514)
T 2gw1_A 9 LKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGL 86 (514)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHH
Confidence 4445566778899999999999999876 6888999999999999999999999987753 3567889999999999
Q ss_pred CccHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhcCCCchhHHHHH---HHHHHhcCCHHHH
Q 046194 437 EALVSEAVKYYLDMRRAGWSPNGVTFINILAAASSFSMGKLGHQVHAQVIKYNVANETTIENAL---LSCYGKCGEMDDC 513 (934)
Q Consensus 437 g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~l---i~~~~~~g~~~~A 513 (934)
|++ ++|+..|+++...+. ++......++..+........+.+.+..+...+..|+....... ............+
T Consensus 87 g~~-~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (514)
T 2gw1_A 87 GKF-ADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM 164 (514)
T ss_dssp TCH-HHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHH
T ss_pred hhH-HHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHH
Confidence 999 999999999988753 34444444444443333333333323222221111111100000 0111111112222
Q ss_pred HHHHHhhccC--------C-CcchHHHHHHHHHh---cCChhHHHHHHHHHHH-----cCCCC--------CHhHHHHHH
Q 046194 514 EKIFARMSER--------R-DEVSWNSMISGYIH---NELLPKAMNLVWFMMQ-----RGQRL--------DHFTFATVL 568 (934)
Q Consensus 514 ~~~~~~~~~~--------p-~~~~~~~li~~~~~---~g~~~~A~~l~~~m~~-----~g~~p--------~~~t~~~ll 568 (934)
...+...... | +...|......+.. .|++++|+..|+++.. ....| +..++..+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (514)
T 2gw1_A 165 ASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTG 244 (514)
T ss_dssp HHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHH
Confidence 2222222221 1 23344444444444 8999999999999987 32222 345677778
Q ss_pred HHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCC---CCcccccHHHHHHHHcCChHH
Q 046194 569 SACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPV---RNVYSWNSMISGYARHGHGDK 645 (934)
Q Consensus 569 ~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~ 645 (934)
..+...|+++.|...+..+.+.... ...+..+...|...|++++|...|+.+.. .+..+|..+...|...|++++
T Consensus 245 ~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 322 (514)
T 2gw1_A 245 IFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQ 322 (514)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHH
Confidence 8889999999999999999987644 88888999999999999999999998753 356688999999999999999
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhC-
Q 046194 646 ALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKM- 724 (934)
Q Consensus 646 A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m- 724 (934)
|+..|+++.+.. +.+...+..+...+...|++++|..+|+.+.+. .+.+...+..+...|.+.|++++|.+.++++
T Consensus 323 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 399 (514)
T 2gw1_A 323 AGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDLAI 399 (514)
T ss_dssp HHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999999999853 224667888888999999999999999999874 2334778999999999999999999999887
Q ss_pred ---CCCCC----HHHHHHHHHHHHh---ccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHHh
Q 046194 725 ---PITPN----SLIWRTVLGACCR---ANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 725 ---~~~p~----~~~~~~ll~~~~~---~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 794 (934)
+..|+ ..+|..+...+.. . |+.+.|...+++++++.|+++..+..++.+|...|++++|.+.+++..+
T Consensus 400 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 477 (514)
T 2gw1_A 400 ELENKLDGIYVGIAPLVGKATLLTRNPTV--ENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESAD 477 (514)
T ss_dssp HHHHTSSSCSSCSHHHHHHHHHHHTSCCT--THHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhhhccchHHHHHHHHHHHHHHHhhhhhc--CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 23333 4488899999998 8 9999999999999999999999999999999999999999999998875
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.84 E-value=2.3e-15 Score=178.38 Aligned_cols=689 Identities=11% Similarity=0.075 Sum_probs=349.2
Q ss_pred hHHHHHHhhcCChhhHHHhhccCCCCChhhHHHHHHHHhcCCChhhHHHHHHHHHHcCCCCCcccHHHHHHHhhhcCCCC
Q 046194 24 NTLINVYVRVGDLASASKLFDEMPDRNSVSWACIVSGYTHKGMSNEACKMFKEMVRAGFLLNRYALGSVLRACQECGPSG 103 (934)
Q Consensus 24 ~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~ 103 (934)
+..+..+++.|.++.+...-.+.. ...-|..|+..+.+. +++.|.++-..+.... |....+..+...+.+. +.
T Consensus 486 ~Kvi~~l~~~gq~~ki~~Y~~~~~--~~pDy~~ll~~~~~~-~P~~~~~fa~~L~~~~--~p~~d~~~ivd~f~~~--~~ 558 (1630)
T 1xi4_A 486 NKVIQCFAETGQVQKIVLYAKKVG--YTPDWIFLLRNVMRI-SPDQGQQFAQMLVQDE--EPLADITQIVDVFMEY--NL 558 (1630)
T ss_pred HHHHHHHHHhCCHHHHHHHHhccC--CCccHHHHHHHHhhc-ChHHHHHHHHHHhcCC--CCccCHHHHHHHHHhc--Cc
Confidence 345555555555555555543321 133366666666654 4666766655555442 2344566666666666 77
Q ss_pred hhhhhHHHHHHHHhcCCCCchhhHHHHHHhhhCCCChHHHHHHhhccCCCCcc---cHHHHHHHHHcCCCchHHHHHHHH
Q 046194 104 FKFGMQVHCLVLKSNQTFDGLVSNVLIAMYGSCLESTDCARRIFEEIETRDLI---SWNSIISVYSQRGDTISVFKLFSR 180 (934)
Q Consensus 104 ~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~~g~~~~a~~~f~~~~~~~~~---~~~~li~~~~~~g~~~~A~~l~~~ 180 (934)
+..+..+.-.+++.+-..+..+.+.|+.+=.. ..+.-|..+| ..+.. .|..+-.-|-++|-++.|++.|.+
T Consensus 559 iq~~t~fLld~lk~n~~e~~~LQTrlle~Nl~--~~pqvadail----~~~~fthyd~~~IA~LCE~aGl~qrale~y~d 632 (1630)
T 1xi4_A 559 IQQCTAFLLDALKNNRPSEGPLQTRLLEMNLM--HAPQVADAIL----GNQMFTHYDRAHIAQLCEKAGLLQRALEHFTD 632 (1630)
T ss_pred HHHHHHHHHHHHhCCChhhhhHhHHHHHHhhc--cchhHHHHHH----hcCccccccHHHHHHHHHHcCcHHHHHHhcCC
Confidence 77777777777777766666666766665333 2333333333 33444 488899999999999999999987
Q ss_pred HHHcc--CCCCCCCCceeHHHHHHHHhcCccccchHHHHHHHHHHHhCCCCCccchhHHHHHHHhcCChHHHHHHHHHhh
Q 046194 181 MQREG--FRYSLKPNEYTFGSLITAAYSSVLSGSYLLQQILAMVKKAGLLSDLYVGSALVSGFARLGNFYYARKIFEQMI 258 (934)
Q Consensus 181 m~~~g--~~~~~~p~~~t~~~ll~a~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 258 (934)
+..-. + +......=..++.-++++ ..+.+.+.++.|.+.+++-+....-....-|...=-.+...++|++..
T Consensus 633 ~~dikR~~---~~~~~~~~~~l~~~fg~l---~~~~s~~~l~~~l~~n~~qnlq~vvqva~ky~~~lg~~~li~~fe~~~ 706 (1630)
T 1xi4_A 633 LYDIKRAV---VHTHLLNPEWLVNYFGSL---SVEDSLECLRAMLSANIRQNLQICVQVASKYHEQLSTQSLIELFESFK 706 (1630)
T ss_pred HHHHHHHh---hccCcCCHHHHHHHHhcC---CHHHHHHHHHHHHHHhHhhhhhhhhhHHHHHHhhcCHHHHHHHHHHhc
Confidence 64321 1 011111122333433332 223377888888876655554433333333333333445555555543
Q ss_pred hcccchhhhhhhhhhhhhHHHHHHHHHcCCCchhHHHHHHHHhhccCChhHHHHHHhcCCC---------------CC--
Q 046194 259 QKNVVSMNGLMEGRRKGKEVHGYLIRSGLFDMVAVGNGLVNMYAKCGTIDDSRSVFRFMIG---------------KD-- 321 (934)
Q Consensus 259 ~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---------------~~-- 321 (934)
.-+. +. -..+.+ -.+..|+.+....|.+.++.|++.+.+++.++-.- +|
T Consensus 707 ~~eg-----l~-------y~l~si--v~~s~d~~vhfkyi~aa~~~~q~~everi~res~~y~~e~vk~flk~~kl~d~~ 772 (1630)
T 1xi4_A 707 SFEG-----LF-------YFLGSI--VNFSQDPDVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQL 772 (1630)
T ss_pred chhh-----HH-------HHHHhh--ccccCChHHHHHHHHHHHHhCCchhhhHHhccCCCCCHHHHHHHHhhCCCCCCC
Confidence 2110 00 000111 12456888889999999999999999888766411 11
Q ss_pred -------ccc-------------HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHH-------------HHhh
Q 046194 322 -------SVS-------------WNTMISGLDQNGCYEEAIMNFCAMRRDGLMSSNFSLISTL-------------SSCA 368 (934)
Q Consensus 322 -------~~~-------------~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-------------~a~~ 368 (934)
... ....|..|++.-++..+-.+...+.+ +.-+......+| ..+-
T Consensus 773 pli~vCdr~~~v~~l~~yLy~n~~~~~ie~yv~~vnp~~~p~Vvg~lld--~d~~e~~ik~ll~~v~~~~~~~~lv~~~e 850 (1630)
T 1xi4_A 773 PLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRLPVVIGGLLD--VDCSEDVIKNLILVVRGQFSTDELVAEVE 850 (1630)
T ss_pred CceeeccccccHHHHHHHHHhcCchhHHHHHHhccCCcccchhhhhhhc--CCCCHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 110 12234445544444444433333333 122222333333 3333
Q ss_pred ccCchHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhcCChHHH-------------------------HHHHhhC-----
Q 046194 369 SLGWIMLGQQIHGEGLKLGLDSDVSVSNALLSLYADAGYLSRC-------------------------LKVFFLM----- 418 (934)
Q Consensus 369 ~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A-------------------------~~~f~~~----- 418 (934)
+.+++..-...++.-+..| ..++.++|+|...|...++-.+. .-.+++-
T Consensus 851 krnrLkll~p~LE~~~~~g-~~~~~~hnalakiyid~n~npe~fL~~n~~yd~~~vgkyce~rDp~la~iay~~g~~d~e 929 (1630)
T 1xi4_A 851 KRNRLKLLLPWLEARIHEG-CEEPATHNALAKIYIDSNNNPERFLRENPYYDSRVVGKYCEKRDPHLACVAYERGQCDLE 929 (1630)
T ss_pred HHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHhccCCCHHHHhhccCcccHHHHHHHHHhcCcchHHHHhcccCCcHH
Confidence 3444444444455555555 45778899988888755432211 1111110
Q ss_pred -------------------CCCCccch--------------------------------HHHHHHHHhCCccHHHHHHHH
Q 046194 419 -------------------PEHDQVSW--------------------------------NSVIGAFADSEALVSEAVKYY 447 (934)
Q Consensus 419 -------------------~~~~~~~~--------------------------------~~li~~~~~~g~~~~~A~~l~ 447 (934)
.+.|...| ...+.+|...|.+ .+|++++
T Consensus 930 li~vt~~n~l~k~~arylv~r~d~~lW~~vl~~~n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp-~EaieLL 1008 (1630)
T 1xi4_A 930 LINVCNENSLFKSLSRYLVRRKDPELWGSVLLESNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLP-NELIELL 1008 (1630)
T ss_pred HHHHHhcchhHHHHHHHHHHhcCHHHHHHHhcCCcHHHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCH-HHHHHHH
Confidence 00122222 3455678888888 9999999
Q ss_pred HHHHHcCC--CCCcccHHHHHHHHhccCCchHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccC--
Q 046194 448 LDMRRAGW--SPNGVTFINILAAASSFSMGKLGHQVHAQVIKYNVANETTIENALLSCYGKCGEMDDCEKIFARMSER-- 523 (934)
Q Consensus 448 ~~m~~~g~--~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-- 523 (934)
++....+- .-+...-+.++.+..+. +...+.+......+.- ..-+...+...|.+++|..+|++....
T Consensus 1009 EKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d-------~~eIA~Iai~lglyEEAf~IYkKa~~~~~ 1080 (1630)
T 1xi4_A 1009 EKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD-------APDIANIAISNELFEEAFAIFRKFDVNTS 1080 (1630)
T ss_pred HHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc-------HHHHHHHHHhCCCHHHHHHHHHHcCCHHH
Confidence 98874321 01112222333333222 3333333333322110 122334444455555555555544210
Q ss_pred ----------------------CCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhchhhHHHHH
Q 046194 524 ----------------------RDEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVATLERGM 581 (934)
Q Consensus 524 ----------------------p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~ 581 (934)
-+..+|..+..++...|++++|++.|.+. -|...|..++.+|.+.|+++++.
T Consensus 1081 A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAI 1154 (1630)
T 1xi4_A 1081 AVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELV 1154 (1630)
T ss_pred HHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHH
Confidence 03344555555555555555555555331 23344444555555555555555
Q ss_pred HHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCCCCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 046194 582 EVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPVRNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPD 661 (934)
Q Consensus 582 ~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 661 (934)
+.+..+.+.. +++.+.+.++..|+|.+++++..... ..++...|..+...|...|++++|..+|...
T Consensus 1155 eyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-------- 1221 (1630)
T 1xi4_A 1155 KYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-------- 1221 (1630)
T ss_pred HHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh--------
Confidence 5555444432 22222233555555555554322222 2233334444445555555555555555542
Q ss_pred hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 046194 662 HVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKMPITPNSLIWRTVLGACC 741 (934)
Q Consensus 662 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~ 741 (934)
..|..+...+.+.|++++|.+.+++. .+..+|..+..++...|++..|...... +..++..+..++..|.
T Consensus 1222 -~ny~rLA~tLvkLge~q~AIEaarKA-------~n~~aWkev~~acve~~Ef~LA~~cgl~--Iiv~~deLeeli~yYe 1291 (1630)
T 1xi4_A 1222 -SNFGRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACVDGKEFRLAQMCGLH--IVVHADELEELINYYQ 1291 (1630)
T ss_pred -hHHHHHHHHHHHhCCHHHHHHHHHHh-------CCHHHHHHHHHHHhhhhHHHHHHHHHHh--hhcCHHHHHHHHHHHH
Confidence 14445555555555555555554433 1234444444455555555555544432 2223334445666666
Q ss_pred hccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCC--ChHHHHHH
Q 046194 742 RANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGG--KWEDVAKA 788 (934)
Q Consensus 742 ~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g--~~~~a~~~ 788 (934)
.. |.+++|...++..+.++|.+.+.|.-|+.+|++.. +..|+.+.
T Consensus 1292 ~~--G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~ 1338 (1630)
T 1xi4_A 1292 DR--GYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLEL 1338 (1630)
T ss_pred Hc--CCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 66 77777777777777777777777777777776653 44444444
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.82 E-value=8.7e-18 Score=194.85 Aligned_cols=426 Identities=10% Similarity=0.011 Sum_probs=213.5
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCchHHHHHHHHHHhhhCCCCchhHHHHHHHHHHh
Q 046194 325 WNTMISGLDQNGCYEEAIMNFCAMRRDGLMSSNFSLISTLSSCASLGWIMLGQQIHGEGLKLGLDSDVSVSNALLSLYAD 404 (934)
Q Consensus 325 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~ 404 (934)
|..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|+++.|.+.+..+++.. +.+...+..+...|.+
T Consensus 28 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~ 105 (537)
T 3fp2_A 28 LKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANES 105 (537)
T ss_dssp HHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHH
Confidence 4444455555555555555555555432 1233444444445555555555555555555443 2345667777777788
Q ss_pred cCChHHHHHHHhhCCCCCccchHHHHHHHHhCCccHHHHHHHHHHHHHc------CCCCCcccHHHHHHHHhccCCchHH
Q 046194 405 AGYLSRCLKVFFLMPEHDQVSWNSVIGAFADSEALVSEAVKYYLDMRRA------GWSPNGVTFINILAAASSFSMGKLG 478 (934)
Q Consensus 405 ~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~------g~~p~~~t~~~ll~a~~~~~~~~~a 478 (934)
.|++++|...|+.+. .+....+..+..+...+.. .+|+..++++... ...|+...+.. +....+.+.+
T Consensus 106 ~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 179 (537)
T 3fp2_A 106 LGNFTDAMFDLSVLS-LNGDFDGASIEPMLERNLN-KQAMKVLNENLSKDEGRGSQVLPSNTSLAS----FFGIFDSHLE 179 (537)
T ss_dssp HTCHHHHHHHHHHHC------------CHHHHHHH-HHHHHHHHHHCC-------CCCCCHHHHHH----HHHTSCHHHH
T ss_pred cCCHHHHHHHHHHHh-cCCCCChHHHHHHHHHHHH-HHHHHHHHHHHHhCccccccccchHhHHHH----HHHhcChHHH
Confidence 888888888776442 2222222233444444555 7778888777543 12233222222 2222222211
Q ss_pred HHHHHHHHHhcCCCc-hhHHHHHHHHHHhc--------CCHHHHHHHHHhhccC-CC--------cchHHHHHHHHHhcC
Q 046194 479 HQVHAQVIKYNVANE-TTIENALLSCYGKC--------GEMDDCEKIFARMSER-RD--------EVSWNSMISGYIHNE 540 (934)
Q Consensus 479 ~~i~~~~~~~g~~~~-~~~~~~li~~~~~~--------g~~~~A~~~~~~~~~~-p~--------~~~~~~li~~~~~~g 540 (934)
...+... ....+. ......+...+... |++++|..+|+++... |+ ..+|..+...+...|
T Consensus 180 ~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~ 257 (537)
T 3fp2_A 180 VSSVNTS--SNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKN 257 (537)
T ss_dssp HHTSCCC--CSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhhc--cccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcc
Confidence 1111000 000111 11223333333222 3667777777776654 33 123455555666677
Q ss_pred ChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhc
Q 046194 541 LLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFD 620 (934)
Q Consensus 541 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~ 620 (934)
++++|+..|++.... .|+...+..+...+...|+++.|.+.+..+.+... .+..++..+...|...|++++|...|+
T Consensus 258 ~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~ 334 (537)
T 3fp2_A 258 NLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNP-EYPPTYYHRGQMYFILQDYKNAKEDFQ 334 (537)
T ss_dssp CHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCC-CCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 777777777777664 34455666666666667777777777766665432 245556666666666666666666666
Q ss_pred cCCC---CCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCC
Q 046194 621 LMPV---RNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPD-HVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIP 696 (934)
Q Consensus 621 ~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p 696 (934)
.... .+...|..+...|...|++++|+..|+++.+. .|+ ...+..+...+...|++++|.+.|+.+.+...-.+
T Consensus 335 ~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 412 (537)
T 3fp2_A 335 KAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQE 412 (537)
T ss_dssp HHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcch
Confidence 5542 23445666666666666666666666666653 233 34555555566666666666666666554311111
Q ss_pred C----cccHHHHHHHHhhc----------CChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHh
Q 046194 697 Q----LEQFSCMVDLLGRA----------GELDKIEEFINKM-PITP-NSLIWRTVLGACCRANCRKTELGRKAANMLFE 760 (934)
Q Consensus 697 ~----~~~y~~li~~l~~~----------g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~ 760 (934)
+ ...+..+..+|.+. |++++|.+.++++ ...| +..+|..+...+... |+.+.|...++++++
T Consensus 413 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~--g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 413 KIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQM--EKIDEAIELFEDSAI 490 (537)
T ss_dssp SCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh--ccHHHHHHHHHHHHH
Confidence 1 11122333444444 5555555555544 2222 344455555555555 555555555555555
Q ss_pred cCCCCCc
Q 046194 761 MEPQNAV 767 (934)
Q Consensus 761 ~~p~~~~ 767 (934)
+.|.++.
T Consensus 491 ~~~~~~~ 497 (537)
T 3fp2_A 491 LARTMDE 497 (537)
T ss_dssp HC--CHH
T ss_pred hCCCcHH
Confidence 5555443
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.82 E-value=3.9e-18 Score=192.92 Aligned_cols=293 Identities=11% Similarity=0.042 Sum_probs=220.4
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhhccC-C-CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 046194 494 TTIENALLSCYGKCGEMDDCEKIFARMSER-R-DEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSAC 571 (934)
Q Consensus 494 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 571 (934)
...+..+...|.+.|++++|..+|+++... | +..+|..+..+|...|++++|+..|+++...+ +.+..++..+..++
T Consensus 26 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 104 (450)
T 2y4t_A 26 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLL 104 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHH
Confidence 344555566666666666666666655442 2 45556666666666666666666666665542 22345555556666
Q ss_pred hchhhHHHHHHHHHHHHHhCCCCcH---hHHHHH------------HHHHHhcCCHHHHHHHhccCCC---CCcccccHH
Q 046194 572 ASVATLERGMEVHACGVRACLEFDV---VIGSAL------------VDMYSKCGRIDYASRFFDLMPV---RNVYSWNSM 633 (934)
Q Consensus 572 ~~~~~~~~a~~i~~~~~~~~~~~~~---~~~~~l------------i~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~l 633 (934)
...|++++|.+.++.+.+.... +. ..+..+ ...|.+.|++++|...|+.+.. .+...|..+
T Consensus 105 ~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 183 (450)
T 2y4t_A 105 LKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELR 183 (450)
T ss_dssp HHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 6666666666666666553211 22 333333 4458899999999999998763 466789999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHH--------
Q 046194 634 ISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCM-------- 704 (934)
Q Consensus 634 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~l-------- 704 (934)
...|...|++++|+..|+++.+.. +.+..++..+...+...|++++|+..|+.+.+ +.|+ ...+..+
T Consensus 184 ~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~p~~~~~~~~~~~~~~~~~ 259 (450)
T 2y4t_A 184 AECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLK---LDQDHKRCFAHYKQVKKLNK 259 (450)
T ss_dssp HHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCChHHHHHHHHHHHHHHH
Confidence 999999999999999999998853 34577899999999999999999999999986 3455 4444444
Q ss_pred ----HHHHhhcCChHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHH
Q 046194 705 ----VDLLGRAGELDKIEEFINKM-PITPN-----SLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLAN 774 (934)
Q Consensus 705 ----i~~l~~~g~~~~A~~~~~~m-~~~p~-----~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~ 774 (934)
+..+.+.|++++|.+.++++ ...|+ ...|..+...+... |+.+.|...++++++++|+++..|..++.
T Consensus 260 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 337 (450)
T 2y4t_A 260 LIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKD--EKPVEAIRVCSEVLQMEPDNVNALKDRAE 337 (450)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 88999999999999999988 44555 44788888889888 99999999999999999999999999999
Q ss_pred HHHcCCChHHHHHHHHHHHh
Q 046194 775 MYASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 775 ~~~~~g~~~~a~~~~~~m~~ 794 (934)
+|...|++++|.+.++.+.+
T Consensus 338 ~~~~~~~~~~A~~~~~~al~ 357 (450)
T 2y4t_A 338 AYLIEEMYDEAIQDYETAQE 357 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHhcCHHHHHHHHHHHHH
Confidence 99999999999999998875
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.80 E-value=1.4e-17 Score=193.04 Aligned_cols=433 Identities=10% Similarity=0.007 Sum_probs=302.0
Q ss_pred ccchhHHHHHHHhcCChHHHHHHHHHhhhcccchhhhhhhhhhhhhHHHHHHHHHcCCCchhHHHHHHHHhhccCChhHH
Q 046194 231 LYVGSALVSGFARLGNFYYARKIFEQMIQKNVVSMNGLMEGRRKGKEVHGYLIRSGLFDMVAVGNGLVNMYAKCGTIDDS 310 (934)
Q Consensus 231 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 310 (934)
...|..+...+.+.|++++|...|+++.+.+ +.++.++..+...|.+.|++++|
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--------------------------p~~~~~~~~la~~~~~~g~~~~A 78 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD--------------------------PNEPVFYSNISACYISTGDLEKV 78 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC--------------------------TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC--------------------------CCCcHHHHHHHHHHHHcCCHHHH
Confidence 3456778889999999999999999987643 23566777888899999999999
Q ss_pred HHHHhcCCC---CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCchHHHHHHHHHHhhhC
Q 046194 311 RSVFRFMIG---KDSVSWNTMISGLDQNGCYEEAIMNFCAMRRDGLMSSNFSLISTLSSCASLGWIMLGQQIHGEGLKLG 387 (934)
Q Consensus 311 ~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g 387 (934)
.+.|+++.+ .+...|..+...|...|++++|+..|+.+. ..|+... ..+..+...+....+...+..+++..
T Consensus 79 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~---~~~~~~~--~~~~~~~~~~~~~~a~~~~~~~l~~~ 153 (537)
T 3fp2_A 79 IEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLS---LNGDFDG--ASIEPMLERNLNKQAMKVLNENLSKD 153 (537)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHh---cCCCCCh--HHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999988743 367788899999999999999999996432 2333221 12233334444566777777776541
Q ss_pred C--CCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcc---chHHHHHHHHhC--------CccHHHHHHHHHHHHHcC
Q 046194 388 L--DSDVSVSNALLSLYADAGYLSRCLKVFFLMPEHDQV---SWNSVIGAFADS--------EALVSEAVKYYLDMRRAG 454 (934)
Q Consensus 388 ~--~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~---~~~~li~~~~~~--------g~~~~~A~~l~~~m~~~g 454 (934)
. .+........+..|....+.+.+...+......+.. .+..+...+... +++ ++|+.+|+++.+.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~-~~A~~~~~~~l~~- 231 (537)
T 3fp2_A 154 EGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLL-TKSTDMYHSLLSA- 231 (537)
T ss_dssp -----CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHH-HHHHHHHHHHHC--
T ss_pred ccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHH-HHHHHHHHHHHHH-
Confidence 1 111111233344455667777777777666654433 333333333222 244 6667777666543
Q ss_pred CCCCccc-HHHHHHHHhccCCchHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccC-CCcchHHHH
Q 046194 455 WSPNGVT-FINILAAASSFSMGKLGHQVHAQVIKYNVANETTIENALLSCYGKCGEMDDCEKIFARMSER-RDEVSWNSM 532 (934)
Q Consensus 455 ~~p~~~t-~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-p~~~~~~~l 532 (934)
.|+... +..+ ...+..+...+...|++++|...|++.... |+...|..+
T Consensus 232 -~p~~~~~~~~~----------------------------~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l 282 (537)
T 3fp2_A 232 -NTVDDPLRENA----------------------------ALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFL 282 (537)
T ss_dssp --CCCHHHHHHH----------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred -CCCcchhhHHH----------------------------HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCchHHHHH
Confidence 222211 1000 123455667788889999999999887663 676778888
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCH
Q 046194 533 ISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRI 612 (934)
Q Consensus 533 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~ 612 (934)
...|...|++++|+..|++..... +.+..++..+...+...|+++.|.+.+..+.+... .+...+..+...|.+.|++
T Consensus 283 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~ 360 (537)
T 3fp2_A 283 ALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNP-ENVYPYIQLACLLYKQGKF 360 (537)
T ss_dssp HHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCH
Confidence 888889999999999999988753 33567788888888899999999999998888642 2567888899999999999
Q ss_pred HHHHHHhccCCC---CCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCC-CC----hhhHHHHHHHHHhh---------
Q 046194 613 DYASRFFDLMPV---RNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPL-PD----HVTFVGVLSACSHA--------- 675 (934)
Q Consensus 613 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~----~~t~~~ll~a~~~~--------- 675 (934)
++|...|+.+.. .+...|..+...|...|++++|+..|+++.+.... ++ ...+......+...
T Consensus 361 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 440 (537)
T 3fp2_A 361 TESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLD 440 (537)
T ss_dssp HHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CC
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhh
Confidence 999999998763 35668999999999999999999999998874311 11 11133444567777
Q ss_pred -CcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhC-CCCCC
Q 046194 676 -GLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKM-PITPN 729 (934)
Q Consensus 676 -g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p~ 729 (934)
|++++|...|+...+. .+.+...+..+..+|.+.|++++|.+.+++. ...|+
T Consensus 441 ~~~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 494 (537)
T 3fp2_A 441 EEKFNAAIKLLTKACEL--DPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILART 494 (537)
T ss_dssp HHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred HhHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 9999999999999874 2234788999999999999999999999987 44444
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.77 E-value=3.1e-16 Score=171.06 Aligned_cols=321 Identities=9% Similarity=0.026 Sum_probs=209.2
Q ss_pred HHHHHHHhccCCchHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccC-C-CcchHHHHHHHHHhcC
Q 046194 463 INILAAASSFSMGKLGHQVHAQVIKYNVANETTIENALLSCYGKCGEMDDCEKIFARMSER-R-DEVSWNSMISGYIHNE 540 (934)
Q Consensus 463 ~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-p-~~~~~~~li~~~~~~g 540 (934)
..+...+...|+++.|...+..+++.. +.+...+..+...|...|++++|...|++.... | +...|..+...|...|
T Consensus 7 ~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 85 (359)
T 3ieg_A 7 LELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQG 85 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcC
Confidence 334444445555555555555554432 123344444555555555555555555544331 2 3334444455555555
Q ss_pred ChhHHHHHHHHHHHcCCCC---CH-hHHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHH
Q 046194 541 LLPKAMNLVWFMMQRGQRL---DH-FTFATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYAS 616 (934)
Q Consensus 541 ~~~~A~~l~~~m~~~g~~p---~~-~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~ 616 (934)
++++|+..|++.... .| +. ..+..+. .... ......+...+...|++++|.
T Consensus 86 ~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~-------~~~~----------------~~~~~~~a~~~~~~~~~~~A~ 140 (359)
T 3ieg_A 86 KLDEAEDDFKKVLKS--NPSEQEEKEAESQLV-------KADE----------------MQRLRSQALDAFDGADYTAAI 140 (359)
T ss_dssp CHHHHHHHHHHHHTS--CCCHHHHHHHHHHHH-------HHHH----------------HHHHHHHHHHHHHTTCHHHHH
T ss_pred ChHHHHHHHHHHHhc--CCcccChHHHHHHHH-------HHHH----------------HHHHHHHHHHHHHccCHHHHH
Confidence 555555555554442 22 11 1111110 0000 001122356788889999999
Q ss_pred HHhccCCC---CCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhC
Q 046194 617 RFFDLMPV---RNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYG 693 (934)
Q Consensus 617 ~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 693 (934)
+.|+.+.. .+...|..+...|...|++++|+..|+++.+.. +.+..++..+...+...|++++|...|+...+.
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-- 217 (359)
T 3ieg_A 141 TFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKL-- 217 (359)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--
Confidence 98887652 355678888888999999999999999988753 334667788888888999999999999888763
Q ss_pred CCCC-cccHH------------HHHHHHhhcCChHHHHHHHHhC-CCCCC-H----HHHHHHHHHHHhccCCCcHHHHHH
Q 046194 694 LIPQ-LEQFS------------CMVDLLGRAGELDKIEEFINKM-PITPN-S----LIWRTVLGACCRANCRKTELGRKA 754 (934)
Q Consensus 694 ~~p~-~~~y~------------~li~~l~~~g~~~~A~~~~~~m-~~~p~-~----~~~~~ll~~~~~~~~~~~~~a~~~ 754 (934)
.|+ ...+. .+...+.+.|++++|.+.++++ ...|+ . ..+..+...+... |+.+.|...
T Consensus 218 -~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~--~~~~~A~~~ 294 (359)
T 3ieg_A 218 -DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKD--EKPVEAIRI 294 (359)
T ss_dssp -CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred -CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHc--cCHHHHHHH
Confidence 344 22222 3367789999999999999887 33444 2 2344566777778 999999999
Q ss_pred HHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHHhCCCcCCCceeEEEeCCEEEEEEcCCCCCCChHHHHHHHHH
Q 046194 755 ANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMKEAEVKKEAGCSWVTMKDGVHVFVAGDESHPEKDLIYEKLKE 834 (934)
Q Consensus 755 ~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~ 834 (934)
++++++.+|+++..+..++.+|...|++++|.+.++...+ ..|....++..+.+
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~--------------------------~~p~~~~~~~~l~~ 348 (359)
T 3ieg_A 295 CSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE--------------------------HNENDQQIREGLEK 348 (359)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--------------------------TCTTCHHHHHHHHH
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--------------------------cCCCChHHHHHHHH
Confidence 9999999999999999999999999999999999998874 34556667777777
Q ss_pred HHHHHHH
Q 046194 835 LNQKMRD 841 (934)
Q Consensus 835 l~~~m~~ 841 (934)
+...+++
T Consensus 349 ~~~~~~~ 355 (359)
T 3ieg_A 349 AQRLLKQ 355 (359)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7666653
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.7e-15 Score=165.14 Aligned_cols=322 Identities=10% Similarity=0.055 Sum_probs=231.4
Q ss_pred ccchHHHHHHHHhCCccHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhcCCCchhHHHHHHH
Q 046194 423 QVSWNSVIGAFADSEALVSEAVKYYLDMRRAGWSPNGVTFINILAAASSFSMGKLGHQVHAQVIKYNVANETTIENALLS 502 (934)
Q Consensus 423 ~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~ 502 (934)
+..|..+...+.+.|++ ++|+..|++..+.. +.+...+..+...+...|+++.|...+..+++.. +.+...+..+..
T Consensus 3 ~~~~~~~~~~~~~~g~~-~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQL-ADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCH-HHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 34566667777788888 88888888887753 2345677778888889999999999999988764 335678899999
Q ss_pred HHHhcCCHHHHHHHHHhhccC-C----CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhchhhH
Q 046194 503 CYGKCGEMDDCEKIFARMSER-R----DEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVATL 577 (934)
Q Consensus 503 ~~~~~g~~~~A~~~~~~~~~~-p----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 577 (934)
.|.+.|++++|...|++.... | +...|..+...+. ...+......+...|++
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCH
Confidence 999999999999999998775 4 2233333311000 00111222334444555
Q ss_pred HHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCC---CCcccccHHHHHHHHcCChHHHHHHHHHHH
Q 046194 578 ERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPV---RNVYSWNSMISGYARHGHGDKALTLFSQMK 654 (934)
Q Consensus 578 ~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 654 (934)
+.|.+.+..+.+.. +.+...+..+...|...|++++|...|+.+.. .+..+|..+...|...|++++|+..|++..
T Consensus 137 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 215 (359)
T 3ieg_A 137 TAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECL 215 (359)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 55555555544432 22455666677777777777777777776542 345577788888888888888888888888
Q ss_pred HCCCCCChhh-HH------------HHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCc-----ccHHHHHHHHhhcCChHH
Q 046194 655 LDGPLPDHVT-FV------------GVLSACSHAGLVDEGFKHFKSMSQVYGLIPQL-----EQFSCMVDLLGRAGELDK 716 (934)
Q Consensus 655 ~~g~~p~~~t-~~------------~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-----~~y~~li~~l~~~g~~~~ 716 (934)
+. .|+... +. .+...+...|++++|...++.+.+. .|+. ..+..+..++.+.|++++
T Consensus 216 ~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~~~~~~ 290 (359)
T 3ieg_A 216 KL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSVAEYTVRSKERICHCFSKDEKPVE 290 (359)
T ss_dssp HH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred hh--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHHccCHHH
Confidence 74 455322 22 2255688899999999999998874 2442 335568889999999999
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHc
Q 046194 717 IEEFINKM-PITP-NSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYAS 778 (934)
Q Consensus 717 A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~ 778 (934)
|.+.+++. ...| +..+|..+...+... |+.+.|...++++++++|+++..+..+..++..
T Consensus 291 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 291 AIRICSEVLQMEPDNVNALKDRAEAYLIE--EMYDEAIQDYEAAQEHNENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 99999987 4445 678899999999998 999999999999999999999888887776543
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.72 E-value=1.2e-15 Score=163.28 Aligned_cols=344 Identities=13% Similarity=0.114 Sum_probs=147.1
Q ss_pred hccCChhHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCchHHHHHHHH
Q 046194 302 AKCGTIDDSRSVFRFMIGKDSVSWNTMISGLDQNGCYEEAIMNFCAMRRDGLMSSNFSLISTLSSCASLGWIMLGQQIHG 381 (934)
Q Consensus 302 ~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~ 381 (934)
-+.|++++|.+.+++++.|+ +|..|..++.+.|++++|++.|.+ .+|..+|..++.++...|+++++...+.
T Consensus 14 ~~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 37899999999999997664 999999999999999999999975 3688899999999999999999999888
Q ss_pred HHhhhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCCCCccchHHHHHHHHhCCccHHHHHHHHHHHHHcCCCCCccc
Q 046194 382 EGLKLGLDSDVSVSNALLSLYADAGYLSRCLKVFFLMPEHDQVSWNSVIGAFADSEALVSEAVKYYLDMRRAGWSPNGVT 461 (934)
Q Consensus 382 ~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t 461 (934)
...+. .+++.+.+.|+.+|.++|+++++.++|+. |+..+|+.+...|...|.+ ++|..+|..+ ..
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~y-eeA~~~Y~~a---------~n 150 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMY-DAAKLLYNNV---------SN 150 (449)
T ss_dssp -------------------------CHHHHTTTTTC---C----------------CT-TTHHHHHHHT---------TC
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCH-HHHHHHHHHh---------hh
Confidence 88774 45578899999999999999998888753 6667888888888888888 8888888865 23
Q ss_pred HHHHHHHHhccCCchHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccCCCcchHHHHHHHHHhcCC
Q 046194 462 FINILAAASSFSMGKLGHQVHAQVIKYNVANETTIENALLSCYGKCGEMDDCEKIFARMSERRDEVSWNSMISGYIHNEL 541 (934)
Q Consensus 462 ~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~ 541 (934)
| ..|++++.+.|++++|.+.+..+ . ++.+|..++.+|...|+
T Consensus 151 ~-----------------------------------~~LA~~L~~Lg~yq~AVea~~KA--~-~~~~Wk~v~~aCv~~~e 192 (449)
T 1b89_A 151 F-----------------------------------GRLASTLVHLGEYQAAVDGARKA--N-STRTWKEVCFACVDGKE 192 (449)
T ss_dssp H-----------------------------------HHHHHHHHTTTCHHHHHHHHHHH--T-CHHHHHHHHHHHHHTTC
T ss_pred H-----------------------------------HHHHHHHHHhccHHHHHHHHHHc--C-CchhHHHHHHHHHHcCc
Confidence 3 56667777777777777777766 2 66777777777777777
Q ss_pred hhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHh--cCCHHHHHHHh
Q 046194 542 LPKAMNLVWFMMQRGQRLDHFTFATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSK--CGRIDYASRFF 619 (934)
Q Consensus 542 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~--~g~~~~A~~~~ 619 (934)
++.|......+ .+.|+. ...++..|.+.|.++++..+++...... +-....++-|.-+|+| -+++.+..+.|
T Consensus 193 f~lA~~~~l~L---~~~ad~--l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~ 266 (449)
T 1b89_A 193 FRLAQMCGLHI---VVHADE--LEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELF 266 (449)
T ss_dssp HHHHHHTTTTT---TTCHHH--HHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---HhCHhh--HHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 77774443321 123333 3356666777777777777777666433 3345556666666664 45677777777
Q ss_pred ccCCC--------CCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCC---hhhHHHHHHHHHhhCcHHHHHHHHHHh
Q 046194 620 DLMPV--------RNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPD---HVTFVGVLSACSHAGLVDEGFKHFKSM 688 (934)
Q Consensus 620 ~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~---~~t~~~ll~a~~~~g~~~~a~~~~~~m 688 (934)
..-.. .+...|.-+...|...++++.|... |.+. .|+ ...|.-++.--.....+-+|..++-
T Consensus 267 ~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t---m~~h--~~~a~~~~~f~~~~~kv~n~elyYkai~fyl-- 339 (449)
T 1b89_A 267 WSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT---MMNH--PTDAWKEGQFKDIITKVANVELYYRAIQFYL-- 339 (449)
T ss_dssp STTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH---HHHS--TTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH--
T ss_pred HHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH---HHhC--ChhhhhhHHHHHHHhchhHHHHHHHHHHHHH--
Confidence 65432 3567899999999999999998873 4442 334 3444444432222222334444432
Q ss_pred HHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhCC
Q 046194 689 SQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKMP 725 (934)
Q Consensus 689 ~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~ 725 (934)
. -.+...+-|..++...=+.+.+..++++.+
T Consensus 340 -~-----~~p~~l~~ll~~l~~~ld~~r~v~~~~~~~ 370 (449)
T 1b89_A 340 -E-----FKPLLLNDLLMVLSPRLDHTRAVNYFSKVK 370 (449)
T ss_dssp -H-----HCGGGHHHHHHHHGGGCCHHHHHHHHHHTT
T ss_pred -h-----cCHHHHHHHHHHHHhccCcHHHHHHHHHcC
Confidence 2 233446777777776677777777777764
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.3e-15 Score=163.99 Aligned_cols=286 Identities=9% Similarity=-0.025 Sum_probs=225.1
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhhccC-C-CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHH
Q 046194 491 ANETTIENALLSCYGKCGEMDDCEKIFARMSER-R-DEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVL 568 (934)
Q Consensus 491 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 568 (934)
+.+..+...+...+...|++++|.++|+++... | +...+..++..+...|++++|+.+++++.... +.+...+..+.
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 344555667777788888888888888887653 3 55567777788888888888888888887752 23456677777
Q ss_pred HHHhchh-hHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCC---CCcccccHHHHHHHHcCChH
Q 046194 569 SACASVA-TLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPV---RNVYSWNSMISGYARHGHGD 644 (934)
Q Consensus 569 ~a~~~~~-~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~ 644 (934)
..+...| ++++|.+.+..+.+.. +.+...+..+...|...|++++|...|+.+.. .+...|..+...|...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHH
Confidence 7788888 8888888888887753 22567788888899999999999999887753 34567778888999999999
Q ss_pred HHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCC-------CCCcccHHHHHHHHhhcCChHH
Q 046194 645 KALTLFSQMKLDGPLPD-HVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGL-------IPQLEQFSCMVDLLGRAGELDK 716 (934)
Q Consensus 645 ~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~-------~p~~~~y~~li~~l~~~g~~~~ 716 (934)
+|+..|+++.+. .|+ ...+..+...+...|++++|...|+...+...- ......+..+..+|.+.|++++
T Consensus 177 ~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 177 LAERFFSQALSI--APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHh--CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 999999999885 444 667888888899999999999999988774211 3336788899999999999999
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHH-cCCCh
Q 046194 717 IEEFINKM-PITP-NSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYA-SGGKW 782 (934)
Q Consensus 717 A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~-~~g~~ 782 (934)
|.+.+++. ...| +..+|..+...+... |+.+.|...++++++++|+++..+..++.+|. ..|+.
T Consensus 255 A~~~~~~a~~~~~~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 255 ALDYHRQALVLIPQNASTYSAIGYIHSLM--GNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHHHSTTCSHHHHHHHHHHHHH--TCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHHHHh--ccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCch
Confidence 99999887 3334 567888888888888 99999999999999999999999999999884 44544
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.70 E-value=5.9e-16 Score=165.51 Aligned_cols=349 Identities=13% Similarity=0.079 Sum_probs=165.4
Q ss_pred hcCChHHHHHHHhhCCCCCccchHHHHHHHHhCCccHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhccCCchHHHHHHH
Q 046194 404 DAGYLSRCLKVFFLMPEHDQVSWNSVIGAFADSEALVSEAVKYYLDMRRAGWSPNGVTFINILAAASSFSMGKLGHQVHA 483 (934)
Q Consensus 404 ~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~ 483 (934)
+.|++++|.++++++..|+ +|..|..++.+.|++ ++|++.|.+ .+|..+|..++.++...|+++++...+.
T Consensus 15 ~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~-~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMV-KEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCH-HHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 6788999999999996664 999999999999999 999999965 3677899999999999999999999888
Q ss_pred HHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhH
Q 046194 484 QVIKYNVANETTIENALLSCYGKCGEMDDCEKIFARMSERRDEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFT 563 (934)
Q Consensus 484 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 563 (934)
...+. .+++.+.+.|+.+|.++|+++++.++++ .|+..+|+.+...|...|++++|...|..+ ..
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~----~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n 150 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFIN----GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SN 150 (449)
T ss_dssp -------------------------CHHHHTTTTT----CC----------------CTTTHHHHHHHT---------TC
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc----CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hh
Confidence 77774 4557888999999999999999988875 368889999999999999999999999977 47
Q ss_pred HHHHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCCCCcccccHHHHHHHHcCCh
Q 046194 564 FATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPVRNVYSWNSMISGYARHGHG 643 (934)
Q Consensus 564 ~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~ 643 (934)
|..+..++.+.|+++.|.+.+..+ .++.+|..++.+|...|+++.|......+. .++.-...++..|.+.|++
T Consensus 151 ~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~ 223 (449)
T 1b89_A 151 FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYF 223 (449)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCH
Confidence 999999999999999999999987 378999999999999999999988877655 3333344688999999999
Q ss_pred HHHHHHHHHHHHCCCCCC-hhhHHHHHHHHH--hhCcHHHHHHHHHHhHHhhCCCC------CcccHHHHHHHHhhcCCh
Q 046194 644 DKALTLFSQMKLDGPLPD-HVTFVGVLSACS--HAGLVDEGFKHFKSMSQVYGLIP------QLEQFSCMVDLLGRAGEL 714 (934)
Q Consensus 644 ~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~--~~g~~~~a~~~~~~m~~~~~~~p------~~~~y~~li~~l~~~g~~ 714 (934)
++|+.+++..... .|. ...|+-+.-+++ +-+++.+.++.|..- -+++| +..+|.-++..|...|++
T Consensus 224 eEai~lLe~aL~l--e~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~---ini~k~~~~~~~~~~w~e~~~ly~~~~e~ 298 (449)
T 1b89_A 224 EELITMLEAALGL--ERAHMGMFTELAILYSKFKPQKMREHLELFWSR---VNIPKVLRAAEQAHLWAELVFLYDKYEEY 298 (449)
T ss_dssp HHHHHHHHHHTTS--TTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT---SCHHHHHHHHHTTTCHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhCC--cHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH---hcCcHHHHHHHHHHHHHHHHHHHHhhchH
Confidence 9999999998764 343 444555544454 455666666666533 35666 488999999999999999
Q ss_pred HHHHHHHHhC-CCCCCHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCC----------CchHHHHHHHHHcCCChH
Q 046194 715 DKIEEFINKM-PITPNSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQN----------AVNYVLLANMYASGGKWE 783 (934)
Q Consensus 715 ~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~----------~~~y~~l~~~~~~~g~~~ 783 (934)
+.|...+-+- +..=+... +.....+- .+.|.--++..--++-.|.- ..-+...+.++.+.|.+.
T Consensus 299 d~A~~tm~~h~~~a~~~~~---f~~~~~kv--~n~elyYkai~fyl~~~p~~l~~ll~~l~~~ld~~r~v~~~~~~~~l~ 373 (449)
T 1b89_A 299 DNAIITMMNHPTDAWKEGQ---FKDIITKV--ANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLP 373 (449)
T ss_dssp HHHHHHHHHSTTTTCCHHH---HHHHHHHC--SSTHHHHHHHHHHHHHCGGGHHHHHHHHGGGCCHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHhCChhhhhhHH---HHHHHhch--hHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCcHHHHHHHHHcCCcH
Confidence 9998766554 22112222 22233333 55555555444444444421 011223344445555555
Q ss_pred HHHHHHHHHH
Q 046194 784 DVAKARKAMK 793 (934)
Q Consensus 784 ~a~~~~~~m~ 793 (934)
-+...++.+.
T Consensus 374 l~~~yl~~v~ 383 (449)
T 1b89_A 374 LVKPYLRSVQ 383 (449)
T ss_dssp TTHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555554444
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.67 E-value=3.8e-15 Score=163.19 Aligned_cols=278 Identities=10% Similarity=-0.028 Sum_probs=220.6
Q ss_pred HHhcCCHHHHHH-HHHhhccC----C--CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhchhh
Q 046194 504 YGKCGEMDDCEK-IFARMSER----R--DEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVAT 576 (934)
Q Consensus 504 ~~~~g~~~~A~~-~~~~~~~~----p--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 576 (934)
|.-.|++++|.. .|++.... | +...|..+...+.+.|++++|+..|+++.... +.+..++..+..++...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 444577888887 77755442 2 45678888888999999999999999988753 3456778888888889999
Q ss_pred HHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCC--C-CcccccH---------------HHHHHH
Q 046194 577 LERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPV--R-NVYSWNS---------------MISGYA 638 (934)
Q Consensus 577 ~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~---------------li~~~~ 638 (934)
++.|...+..+++.. +.+..++..+...|...|++++|.+.|+.+.. | +...+.. .+..+.
T Consensus 114 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (368)
T 1fch_A 114 ELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL 192 (368)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh
Confidence 999999999888864 33677888899999999999999999987653 2 2223332 244444
Q ss_pred HcCChHHHHHHHHHHHHCCCCCC---hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhhcCCh
Q 046194 639 RHGHGDKALTLFSQMKLDGPLPD---HVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGRAGEL 714 (934)
Q Consensus 639 ~~g~~~~A~~l~~~m~~~g~~p~---~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~ 714 (934)
..|++++|+..|+++.+. .|+ ..++..+...+...|++++|...|+.+.+. .|+ ...|..++.++.+.|++
T Consensus 193 ~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~g~~ 267 (368)
T 1fch_A 193 SDSLFLEVKELFLAAVRL--DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV---RPNDYLLWNKLGATLANGNQS 267 (368)
T ss_dssp HHHHHHHHHHHHHHHHHH--STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCH
T ss_pred hcccHHHHHHHHHHHHHh--CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHcCCH
Confidence 899999999999999985 454 677888899999999999999999999873 344 77899999999999999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCC-----------CchHHHHHHHHHcCCC
Q 046194 715 DKIEEFINKM-PITP-NSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQN-----------AVNYVLLANMYASGGK 781 (934)
Q Consensus 715 ~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~-----------~~~y~~l~~~~~~~g~ 781 (934)
++|.+.++++ ...| +..+|..+...+... |+++.|...+++++++.|++ +..|..++.+|...|+
T Consensus 268 ~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 345 (368)
T 1fch_A 268 EEAVAAYRRALELQPGYIRSRYNLGISCINL--GAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQ 345 (368)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCC
Confidence 9999999987 4444 577899999999999 99999999999999999988 7889999999999999
Q ss_pred hHHHHHHHH
Q 046194 782 WEDVAKARK 790 (934)
Q Consensus 782 ~~~a~~~~~ 790 (934)
+++|..+.+
T Consensus 346 ~~~A~~~~~ 354 (368)
T 1fch_A 346 SDAYGAADA 354 (368)
T ss_dssp GGGHHHHHT
T ss_pred hHhHHHhHH
Confidence 999988755
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=1e-14 Score=156.89 Aligned_cols=262 Identities=11% Similarity=0.039 Sum_probs=224.7
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHH
Q 046194 525 DEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVD 604 (934)
Q Consensus 525 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~ 604 (934)
+...+..+...+...|++++|+++|+++.... +.+...+..+...+...|++++|...+..+.+.. +.+...+..+..
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 98 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGC 98 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHH
Confidence 66778888889999999999999999998763 3344566677788899999999999999998864 336778888999
Q ss_pred HHHhcC-CHHHHHHHhccCCC---CCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHH
Q 046194 605 MYSKCG-RIDYASRFFDLMPV---RNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDE 680 (934)
Q Consensus 605 ~y~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 680 (934)
.|...| ++++|.+.|+.... .+...|..+...|...|++++|+..|+++.+.. +.+...+..+...+...|++++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~ 177 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKL 177 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHH
Confidence 999999 99999999998753 356689999999999999999999999999853 2235667778889999999999
Q ss_pred HHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhC-CC----------CCCHHHHHHHHHHHHhccCCCcH
Q 046194 681 GFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKM-PI----------TPNSLIWRTVLGACCRANCRKTE 749 (934)
Q Consensus 681 a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m-~~----------~p~~~~~~~ll~~~~~~~~~~~~ 749 (934)
|.+.|+...+. .+.+...+..+...+.+.|++++|.+.++++ .. ..+..+|..+...+... |+.+
T Consensus 178 A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~--g~~~ 253 (330)
T 3hym_B 178 AERFFSQALSI--APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKL--KKYA 253 (330)
T ss_dssp HHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHT--TCHH
T ss_pred HHHHHHHHHHh--CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHh--cCHH
Confidence 99999999762 2334788999999999999999999999876 11 33467899999999999 9999
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHH
Q 046194 750 LGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMK 793 (934)
Q Consensus 750 ~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~ 793 (934)
.|...+++++++.|+++..+..++.+|...|++++|.+.+++..
T Consensus 254 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 297 (330)
T 3hym_B 254 EALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTAL 297 (330)
T ss_dssp HHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999877665
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.7e-13 Score=156.29 Aligned_cols=352 Identities=8% Similarity=-0.012 Sum_probs=245.1
Q ss_pred cCChHHHHHHHhhCCC-CCccchHHHHHHHHh----CCccHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhc----cCCc
Q 046194 405 AGYLSRCLKVFFLMPE-HDQVSWNSVIGAFAD----SEALVSEAVKYYLDMRRAGWSPNGVTFINILAAASS----FSMG 475 (934)
Q Consensus 405 ~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~----~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~~~~ 475 (934)
.+++++|...|++..+ .+...+..|...|.. .++. ++|++.|++..+.| +...+..+-..+.. .++.
T Consensus 56 ~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~-~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~ 131 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDY-AQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDK 131 (490)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCH-HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCH
T ss_pred CcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCH-HHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCH
Confidence 4455555555544322 233344444444444 4555 55555555555443 22333334444444 4566
Q ss_pred hHHHHHHHHHHHhcCCCchhHHHHHHHHHHh----cCCHHHHHHHHHhhccCCCcchHHHHHHHHHh----cCChhHHHH
Q 046194 476 KLGHQVHAQVIKYNVANETTIENALLSCYGK----CGEMDDCEKIFARMSERRDEVSWNSMISGYIH----NELLPKAMN 547 (934)
Q Consensus 476 ~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~ 547 (934)
+.|...+....+.| +...+..|..+|.. .++.++|.+.|++..+..+..++..+...|.. .+++++|++
T Consensus 132 ~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~ 208 (490)
T 2xm6_A 132 AESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQ 208 (490)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHH
Confidence 66666666665554 34455666667766 67888888888877665567777777777777 788888888
Q ss_pred HHHHHHHcCCCCCHhHHHHHHHHHhc----hhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHh----cCCHHHHHHHh
Q 046194 548 LVWFMMQRGQRLDHFTFATVLSACAS----VATLERGMEVHACGVRACLEFDVVIGSALVDMYSK----CGRIDYASRFF 619 (934)
Q Consensus 548 l~~~m~~~g~~p~~~t~~~ll~a~~~----~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~----~g~~~~A~~~~ 619 (934)
.|++....| +...+..+...+.. .++.++|.+.+....+.+ +...+..|..+|.. .++.++|...|
T Consensus 209 ~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~ 282 (490)
T 2xm6_A 209 WYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWY 282 (490)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHH
Confidence 888877764 34455555555554 678888888888877754 44566667777777 88999999999
Q ss_pred ccCCC-CCcccccHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhC---cHHHHHHHHHHhHH
Q 046194 620 DLMPV-RNVYSWNSMISGYARH-----GHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAG---LVDEGFKHFKSMSQ 690 (934)
Q Consensus 620 ~~~~~-~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g---~~~~a~~~~~~m~~ 690 (934)
+...+ .+..++..+...|... +++++|+..|++..+.| +...+..+...+...| +.++|.++|+...+
T Consensus 283 ~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~ 359 (490)
T 2xm6_A 283 RKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAA 359 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHH
Confidence 87764 3555777788888877 89999999999999865 3455666666676656 78999999999887
Q ss_pred hhCCCCCcccHHHHHHHHhh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----ccCCCcHHHHHHHHHHHhcC
Q 046194 691 VYGLIPQLEQFSCMVDLLGR----AGELDKIEEFINKMPITPNSLIWRTVLGACCR----ANCRKTELGRKAANMLFEME 762 (934)
Q Consensus 691 ~~~~~p~~~~y~~li~~l~~----~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~~~~~~~~a~~~~~~~~~~~ 762 (934)
. .+...+..|..+|.. .+++++|.+.+++.-...++..+..|...+.. . +|.++|...++++.+..
T Consensus 360 ~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~--~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 360 K----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVE--RDYVQAWAWFDTASTND 433 (490)
T ss_dssp T----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSC--CCHHHHHHHHHHHHHHH
T ss_pred C----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCC--CCHHHHHHHHHHHHHCC
Confidence 3 457788889999988 89999999999987323467788888888877 6 89999999999999998
Q ss_pred CC---CCchHHHHHHHHHc
Q 046194 763 PQ---NAVNYVLLANMYAS 778 (934)
Q Consensus 763 p~---~~~~y~~l~~~~~~ 778 (934)
|+ ++.....|+.++..
T Consensus 434 ~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 434 MNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp CCHHHHHHHHHHHTTSCHH
T ss_pred CCCcCCHHHHHHHHhcCHh
Confidence 54 67777777776554
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.64 E-value=4e-15 Score=162.94 Aligned_cols=260 Identities=9% Similarity=-0.059 Sum_probs=207.8
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHH
Q 046194 525 DEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVD 604 (934)
Q Consensus 525 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~ 604 (934)
+...|..+...+.+.|++++|+..|+++.... +.+..++..+...+...|++++|...++.+++.. +.+...+..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 45668888888888999999999998888753 3356778888888888899999999998888764 235778888999
Q ss_pred HHHhcCCHHHHHHHhccCCC--CC-----------cccccHHHHHHHHcCChHHHHHHHHHHHHCCCC-CChhhHHHHHH
Q 046194 605 MYSKCGRIDYASRFFDLMPV--RN-----------VYSWNSMISGYARHGHGDKALTLFSQMKLDGPL-PDHVTFVGVLS 670 (934)
Q Consensus 605 ~y~~~g~~~~A~~~~~~~~~--~~-----------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~ 670 (934)
.|...|++++|...|+++.. |+ ...+..+...|...|++++|+..|+++.+.... ++..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 99999999999999988763 21 123344588899999999999999999985321 14678888999
Q ss_pred HHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCc
Q 046194 671 ACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCRANCRKT 748 (934)
Q Consensus 671 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~ 748 (934)
.+...|++++|...|+.+.+. .+.+...|..+..+|.+.|++++|.+.++++ ...| +..+|..+...+... |+.
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~--g~~ 297 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINL--GAY 297 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH--TCC
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHC--CCH
Confidence 999999999999999999874 2334788999999999999999999999987 4455 478899999999999 999
Q ss_pred HHHHHHHHHHHhcCCC------------CCchHHHHHHHHHcCCChHHHHHHHH
Q 046194 749 ELGRKAANMLFEMEPQ------------NAVNYVLLANMYASGGKWEDVAKARK 790 (934)
Q Consensus 749 ~~a~~~~~~~~~~~p~------------~~~~y~~l~~~~~~~g~~~~a~~~~~ 790 (934)
++|...+++++++.|+ +...+..|+.++...|+.+.+.++.+
T Consensus 298 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 351 (365)
T 4eqf_A 298 REAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANL 351 (365)
T ss_dssp HHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 9999999999999887 36779999999999999999877643
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.63 E-value=6.2e-13 Score=153.38 Aligned_cols=209 Identities=7% Similarity=-0.021 Sum_probs=163.1
Q ss_pred HHHHHHHHHHHHhCCCCcHhHHHHHHHHHHh-------cCCHH-------HHHHHhccCCC---C-CcccccHHHHHHHH
Q 046194 578 ERGMEVHACGVRACLEFDVVIGSALVDMYSK-------CGRID-------YASRFFDLMPV---R-NVYSWNSMISGYAR 639 (934)
Q Consensus 578 ~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~-------~g~~~-------~A~~~~~~~~~---~-~~~~~~~li~~~~~ 639 (934)
+.+..+++.+++.. +.+..++..++..+.+ .|+++ +|..+|++... | +...|..++..+.+
T Consensus 255 ~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~ 333 (530)
T 2ooe_A 255 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 333 (530)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 36667788777752 3367778888877775 68887 89999987653 4 45688899999999
Q ss_pred cCChHHHHHHHHHHHHCCCCCCh--hhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHH-HhhcCChH
Q 046194 640 HGHGDKALTLFSQMKLDGPLPDH--VTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDL-LGRAGELD 715 (934)
Q Consensus 640 ~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~-l~~~g~~~ 715 (934)
.|++++|..+|+++.+ +.|+. ..|..++..+.+.|++++|.++|+...+. .|. ...|...+.+ +...|+.+
T Consensus 334 ~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~---~~~~~~~~~~~a~~~~~~~~~~~ 408 (530)
T 2ooe_A 334 RMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED---ARTRHHVYVTAALMEYYCSKDKS 408 (530)
T ss_dssp TTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---TTCCTHHHHHHHHHHHHHTCCHH
T ss_pred cCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---cCCchHHHHHHHHHHHHHcCChh
Confidence 9999999999999998 46653 46888888888899999999999998763 343 3333332222 33689999
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCc----hHHHHHHHHHcCCChHHHHHHH
Q 046194 716 KIEEFINKM-PITP-NSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAV----NYVLLANMYASGGKWEDVAKAR 789 (934)
Q Consensus 716 ~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~----~y~~l~~~~~~~g~~~~a~~~~ 789 (934)
+|.++|++. ...| ++..|..++...... |+.+.|...++++++..|.++. .+...+......|+.+++.++.
T Consensus 409 ~A~~~~e~al~~~p~~~~~~~~~~~~~~~~--g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~ 486 (530)
T 2ooe_A 409 VAFKIFELGLKKYGDIPEYVLAYIDYLSHL--NEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVE 486 (530)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--TCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHhC--CCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999976 3445 578899999988888 9999999999999998877665 6777788888899999999988
Q ss_pred HHHHh
Q 046194 790 KAMKE 794 (934)
Q Consensus 790 ~~m~~ 794 (934)
+.+.+
T Consensus 487 ~r~~~ 491 (530)
T 2ooe_A 487 KRRFT 491 (530)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87765
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.63 E-value=1.5e-13 Score=158.50 Aligned_cols=409 Identities=11% Similarity=0.079 Sum_probs=272.5
Q ss_pred CcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC-ChhhHHHHHHHhhccCchHHHHHHHHHHhhhCCCCchhHHHHHH
Q 046194 321 DSVSWNTMISGLDQNGCYEEAIMNFCAMRRDGLMS-SNFSLISTLSSCASLGWIMLGQQIHGEGLKLGLDSDVSVSNALL 399 (934)
Q Consensus 321 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li 399 (934)
|...|..++. +.+.|++++|..+|+++.+. .| +...|...+..+.+.|+.+.|+.+++.+++.. |++..|..++
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~--~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~ 86 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQ--FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYL 86 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHH
Confidence 6677888887 47788888888888888773 34 34456677777777788888888888887764 5666777666
Q ss_pred HH-HHhcCChHHHHH----HHhhCC------CCCccchHHHHHHHHh---------CCccHHHHHHHHHHHHHcCCCCCc
Q 046194 400 SL-YADAGYLSRCLK----VFFLMP------EHDQVSWNSVIGAFAD---------SEALVSEAVKYYLDMRRAGWSPNG 459 (934)
Q Consensus 400 ~~-y~~~g~~~~A~~----~f~~~~------~~~~~~~~~li~~~~~---------~g~~~~~A~~l~~~m~~~g~~p~~ 459 (934)
.. ....|+.+.|.+ +|+... ..+...|...+....+ .|+. ++|..+|++..+. |+.
T Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~-~~a~~~y~~al~~---P~~ 162 (530)
T 2ooe_A 87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRI-TAVRRVYQRGCVN---PMI 162 (530)
T ss_dssp HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHH-HHHHHHHHHHTTS---CCT
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHH-HHHHHHHHHHHhc---hhh
Confidence 53 334566666554 555431 1244567666665543 5666 7777777777652 322
Q ss_pred ccHHHHHHHHhccCCchHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhh------cc------CCC--
Q 046194 460 VTFINILAAASSFSMGKLGHQVHAQVIKYNVANETTIENALLSCYGKCGEMDDCEKIFARM------SE------RRD-- 525 (934)
Q Consensus 460 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~------~~------~p~-- 525 (934)
. ...+...+.. ++.. .| ..+...++. .+.++++.|..++..+ .+ .|+
T Consensus 163 ~-~~~~~~~~~~---~e~~---------~~----~~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~ 223 (530)
T 2ooe_A 163 N-IEQLWRDYNK---YEEG---------IN----IHLAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNT 223 (530)
T ss_dssp T-HHHHHHHHHH---HHHH---------HC----HHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--
T ss_pred h-HHHHHHHHHH---HHHh---------hc----hhHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCC
Confidence 1 1111111110 0000 00 000011111 1234456666555541 11 122
Q ss_pred ------cchHHHHHHHHHhc----CCh----hHHHHHHHHHHHcCCCCCHhHHHHHHHHHhc-------hhhHH------
Q 046194 526 ------EVSWNSMISGYIHN----ELL----PKAMNLVWFMMQRGQRLDHFTFATVLSACAS-------VATLE------ 578 (934)
Q Consensus 526 ------~~~~~~li~~~~~~----g~~----~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~-------~~~~~------ 578 (934)
...|...+.-...+ ++. ++|..+|++.... .+-+...|......+.+ .|+++
T Consensus 224 ~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~-~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~ 302 (530)
T 2ooe_A 224 PQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFS 302 (530)
T ss_dssp CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhh
Confidence 23565555433222 222 3778889888775 22355666666666654 68876
Q ss_pred -HHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCC--CC-c-ccccHHHHHHHHcCChHHHHHHHHHH
Q 046194 579 -RGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPV--RN-V-YSWNSMISGYARHGHGDKALTLFSQM 653 (934)
Q Consensus 579 -~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~-~-~~~~~li~~~~~~g~~~~A~~l~~~m 653 (934)
.|..+++.+++.-.+.+...+..++..+.+.|++++|..+|+.+.. |+ . ..|...+..+.+.|+.++|.++|++.
T Consensus 303 ~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~A 382 (530)
T 2ooe_A 303 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 382 (530)
T ss_dssp HHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 8899999888632344688899999999999999999999998753 43 2 47999999999999999999999999
Q ss_pred HHCCCCCC-hhhHHHHHHH-HHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhhcCChHHHHHHHHhC----CC
Q 046194 654 KLDGPLPD-HVTFVGVLSA-CSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGRAGELDKIEEFINKM----PI 726 (934)
Q Consensus 654 ~~~g~~p~-~~t~~~ll~a-~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m----~~ 726 (934)
.+. .|+ ...|...... +...|+.++|..+|+...+.. |+ ...|..+++.+.+.|+.++|..+|++. +.
T Consensus 383 l~~--~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~---p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~ 457 (530)
T 2ooe_A 383 RED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY---GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 457 (530)
T ss_dssp HTC--TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCS
T ss_pred Hhc--cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC---CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCC
Confidence 985 343 2333322222 336899999999999998743 54 788999999999999999999999987 33
Q ss_pred CCC--HHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCC
Q 046194 727 TPN--SLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQN 765 (934)
Q Consensus 727 ~p~--~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~ 765 (934)
.|+ ..+|...+.....+ |+.+.+..+.+++.+..|++
T Consensus 458 ~~~~~~~lw~~~~~~e~~~--G~~~~~~~~~~r~~~~~p~~ 496 (530)
T 2ooe_A 458 PPEKSGEIWARFLAFESNI--GDLASILKVEKRRFTAFREE 496 (530)
T ss_dssp CGGGCHHHHHHHHHHHHHS--SCHHHHHHHHHHHHHHTHHH
T ss_pred CHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHCchh
Confidence 443 55899999988889 99999999999999999854
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=7.8e-16 Score=176.94 Aligned_cols=164 Identities=10% Similarity=0.136 Sum_probs=135.3
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHHhhcc------CCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhH
Q 046194 490 VANETTIENALLSCYGKCGEMDDCEKIFARMSE------RRDEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFT 563 (934)
Q Consensus 490 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 563 (934)
...-..+||+||++|+++|++++|.++|++|.+ .||++|||+||.||++.|+.++|.++|++|...|+.||.+|
T Consensus 123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT 202 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH
Confidence 334456899999999999999999999988753 38999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhchhh-HHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCCC-----CcccccHHHHHH
Q 046194 564 FATVLSACASVAT-LERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPVR-----NVYSWNSMISGY 637 (934)
Q Consensus 564 ~~~ll~a~~~~~~-~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~ 637 (934)
|+++|.++++.|. .+.|.+++++|.+.|+.||..+|++++..+.+.+-++...+++..+..+ .+.+-+.|...|
T Consensus 203 YntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~ 282 (1134)
T 3spa_A 203 YAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVY 282 (1134)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHH
Confidence 9999999999997 4789999999999999999999999999888887777777776655421 123444566666
Q ss_pred HHcCC---------hHHHHHHHHHH
Q 046194 638 ARHGH---------GDKALTLFSQM 653 (934)
Q Consensus 638 ~~~g~---------~~~A~~l~~~m 653 (934)
.+.+. .++-.++|++=
T Consensus 283 s~d~~~s~pk~~~~~~~L~~~~~~Q 307 (1134)
T 3spa_A 283 AKDGRVSYPKLHLPLKTLQCLFEKQ 307 (1134)
T ss_dssp CCCSCCCCCCCSSCHHHHHHHHHHH
T ss_pred ccCCCCcCccccCCHHHHHHHHHHH
Confidence 66552 24555666553
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.8e-13 Score=155.57 Aligned_cols=366 Identities=12% Similarity=0.019 Sum_probs=200.8
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhhCCC------------CCccchHHHHHHHHhCCccHHHHHHHHHHHHHcC---C
Q 046194 391 DVSVSNALLSLYADAGYLSRCLKVFFLMPE------------HDQVSWNSVIGAFADSEALVSEAVKYYLDMRRAG---W 455 (934)
Q Consensus 391 ~~~~~~~li~~y~~~g~~~~A~~~f~~~~~------------~~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g---~ 455 (934)
....||.|...|...|+.++|++.|++..+ ...++|+.+...|...|++ ++|...+++..... .
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~-~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRL-SDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHHhHhcc
Confidence 345677788888888888888777743210 1233455555555555555 55555555443210 0
Q ss_pred CCCcccHHHHHHHHhccCCchHHHHHHHHHHHhcCCCchhHHHHHHHHHHhc--CCHHHHHHHHHhhcc-CCC-cchHHH
Q 046194 456 SPNGVTFINILAAASSFSMGKLGHQVHAQVIKYNVANETTIENALLSCYGKC--GEMDDCEKIFARMSE-RRD-EVSWNS 531 (934)
Q Consensus 456 ~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~~~~-~p~-~~~~~~ 531 (934)
.|. ......++..+..++.+. +++++|...|++..+ .|+ ...+..
T Consensus 129 ~~~-------------------------------~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~ 177 (472)
T 4g1t_A 129 SPY-------------------------------RIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSG 177 (472)
T ss_dssp CSS-------------------------------CCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred ccc-------------------------------chhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 000 001122333333333333 346666666666544 232 333333
Q ss_pred HHHH---HHhcCChhHHHHHHHHHHHcCCCC-CHhHHHHHHHHHh----chhhHHHHHHHHHHHHHhCCCCcHhHHHHHH
Q 046194 532 MISG---YIHNELLPKAMNLVWFMMQRGQRL-DHFTFATVLSACA----SVATLERGMEVHACGVRACLEFDVVIGSALV 603 (934)
Q Consensus 532 li~~---~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~----~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li 603 (934)
+... +...++.++|++.|++.... .| +...+..+...+. ..++.++|.+.++.+.+.. +.+..++..+.
T Consensus 178 ~~~~~~~l~~~~~~~~al~~~~~al~l--~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg 254 (472)
T 4g1t_A 178 LAIASYRLDNWPPSQNAIDPLRQAIRL--NPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAA 254 (472)
T ss_dssp HHHHHHHHHHSCCCCCTHHHHHHHHHH--CSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHH
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHhhc--CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHH
Confidence 3333 23345566666666666553 23 2333333332222 2345566666666665543 22455566666
Q ss_pred HHHHhcCCHHHHHHHhccCCC--C-CcccccHHHHHHHH-------------------cCChHHHHHHHHHHHHCCCCCC
Q 046194 604 DMYSKCGRIDYASRFFDLMPV--R-NVYSWNSMISGYAR-------------------HGHGDKALTLFSQMKLDGPLPD 661 (934)
Q Consensus 604 ~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~-------------------~g~~~~A~~l~~~m~~~g~~p~ 661 (934)
..|.+.|++++|...|+...+ | +..+|..+...|.. .+..++|+..|++..+.. +.+
T Consensus 255 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~ 333 (472)
T 4g1t_A 255 KFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNL 333 (472)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTT
T ss_pred HHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-Cch
Confidence 777777777777777766542 2 23344444444432 234678888888888743 233
Q ss_pred hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcc----cHHHHHH-HHhhcCChHHHHHHHHhC-CCCCCHHHHHH
Q 046194 662 HVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLE----QFSCMVD-LLGRAGELDKIEEFINKM-PITPNSLIWRT 735 (934)
Q Consensus 662 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~----~y~~li~-~l~~~g~~~~A~~~~~~m-~~~p~~~~~~~ 735 (934)
..++..+...+...|++++|...|++..+ +.|+.. .+..+.. .+...|+.++|++.+++. .+.|+...+.
T Consensus 334 ~~~~~~lg~~~~~~~~~~~A~~~~~kaL~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~- 409 (472)
T 4g1t_A 334 FRVCSILASLHALADQYEEAEYYFQKEFS---KELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKE- 409 (472)
T ss_dssp CCCHHHHHHHHHHTTCHHHHHHHHHHHHH---SCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHH-
T ss_pred hhhhhhHHHHHHHhccHHHHHHHHHHHHh---cCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHH-
Confidence 56788888899999999999999999876 334322 2333333 345778999999999886 6677654332
Q ss_pred HHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHHhCCCcCCCceeEE
Q 046194 736 VLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMKEAEVKKEAGCSWV 806 (934)
Q Consensus 736 ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 806 (934)
+..+.++..+++.++.+|+++..|..|+.+|...|++++|.+.+++..+.+.......+|+
T Consensus 410 ----------~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 410 ----------KMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp ----------HHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred ----------HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 3344566778889999999999999999999999999999999998887654433333443
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.61 E-value=9.5e-14 Score=145.82 Aligned_cols=268 Identities=9% Similarity=0.015 Sum_probs=211.6
Q ss_pred HHHhcCCHHHHHHHHHhhccC-CCc--chHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhchhhHHH
Q 046194 503 CYGKCGEMDDCEKIFARMSER-RDE--VSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVATLER 579 (934)
Q Consensus 503 ~~~~~g~~~~A~~~~~~~~~~-p~~--~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~ 579 (934)
-....|+++.|...++..... |+. .....+..+|...|++++|+..++. .-.|+..++..+...+...++.+.
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHH
Confidence 345578899999988876654 322 3445677889999999999886654 245667788888888888899999
Q ss_pred HHHHHHHHHHhCCCC-cHhHHHHHHHHHHhcCCHHHHHHHhccCCCCCcccccHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 046194 580 GMEVHACGVRACLEF-DVVIGSALVDMYSKCGRIDYASRFFDLMPVRNVYSWNSMISGYARHGHGDKALTLFSQMKLDGP 658 (934)
Q Consensus 580 a~~i~~~~~~~~~~~-~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 658 (934)
|.+.++.++..+..| +...+..+...|...|++++|.+.|+. ..+...+..++..|.+.|++++|++.|+++.+.
T Consensus 84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~-- 159 (291)
T 3mkr_A 84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ-- 159 (291)
T ss_dssp HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--
Confidence 999999988876545 566777788999999999999999998 456778999999999999999999999999985
Q ss_pred CCChhhHHHHH----HHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHH
Q 046194 659 LPDHVTFVGVL----SACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLI 732 (934)
Q Consensus 659 ~p~~~t~~~ll----~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~ 732 (934)
.|+.. ...+. ..+...|++++|..+|+++.+. .+.+...|+.+..++.+.|++++|.+.+++. ...| ++.+
T Consensus 160 ~p~~~-~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 236 (291)
T 3mkr_A 160 DEDAT-LTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPET 236 (291)
T ss_dssp CTTCH-HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CcCcH-HHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 57753 22232 3334569999999999999985 4456888999999999999999999999987 5555 5778
Q ss_pred HHHHHHHHHhccCCCcHH-HHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHH
Q 046194 733 WRTVLGACCRANCRKTEL-GRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAK 787 (934)
Q Consensus 733 ~~~ll~~~~~~~~~~~~~-a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~ 787 (934)
|..++..+... |+.++ +...++++++++|+++... ++..+.+.++++..
T Consensus 237 l~~l~~~~~~~--g~~~eaa~~~~~~~~~~~P~~~~~~----d~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 237 LINLVVLSQHL--GKPPEVTNRYLSQLKDAHRSHPFIK----EYRAKENDFDRLVL 286 (291)
T ss_dssp HHHHHHHHHHT--TCCHHHHHHHHHHHHHHCTTCHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHc--CCCHHHHHHHHHHHHHhCCCChHHH----HHHHHHHHHHHHHH
Confidence 99999888888 88865 6789999999999997654 44555555665543
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.61 E-value=2.9e-14 Score=156.15 Aligned_cols=278 Identities=13% Similarity=0.048 Sum_probs=155.8
Q ss_pred hcCChHHHHH-HHhhCCC--C-----CccchHHHHHHHHhCCccHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhccCCc
Q 046194 404 DAGYLSRCLK-VFFLMPE--H-----DQVSWNSVIGAFADSEALVSEAVKYYLDMRRAGWSPNGVTFINILAAASSFSMG 475 (934)
Q Consensus 404 ~~g~~~~A~~-~f~~~~~--~-----~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 475 (934)
..|++++|.. .|++... + +...|..+...+.+.|++ ++|+..|+++.+..
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~A~~~~~~al~~~--------------------- 94 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDL-PNAVLLFEAAVQQD--------------------- 94 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCH-HHHHHHHHHHHHSC---------------------
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhC---------------------
Confidence 3455566655 5553322 1 234455555555666665 66666665555431
Q ss_pred hHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccC-C-CcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 046194 476 KLGHQVHAQVIKYNVANETTIENALLSCYGKCGEMDDCEKIFARMSER-R-DEVSWNSMISGYIHNELLPKAMNLVWFMM 553 (934)
Q Consensus 476 ~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 553 (934)
+.+...+..+...|.+.|++++|...|++.... | +..+|..+...|...|++++|++.|+++.
T Consensus 95 ---------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 159 (368)
T 1fch_A 95 ---------------PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWL 159 (368)
T ss_dssp ---------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ---------------CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 223445566777777788888888887776552 3 56677777888888888888888888877
Q ss_pred HcCCCCCHh-HHHH---------------HHHHHhchhhHHHHHHHHHHHHHhCCCC-cHhHHHHHHHHHHhcCCHHHHH
Q 046194 554 QRGQRLDHF-TFAT---------------VLSACASVATLERGMEVHACGVRACLEF-DVVIGSALVDMYSKCGRIDYAS 616 (934)
Q Consensus 554 ~~g~~p~~~-t~~~---------------ll~a~~~~~~~~~a~~i~~~~~~~~~~~-~~~~~~~li~~y~~~g~~~~A~ 616 (934)
... |+.. .+.. .+..+...|++++|...+..+.+..... +..++..+...|.+.|++++|.
T Consensus 160 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~ 237 (368)
T 1fch_A 160 RYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAV 237 (368)
T ss_dssp HTS--TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhC--cCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHH
Confidence 643 3221 1111 1233336677777777777766643321 4566666666666666666666
Q ss_pred HHhccCCC---CCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhh
Q 046194 617 RFFDLMPV---RNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPD-HVTFVGVLSACSHAGLVDEGFKHFKSMSQVY 692 (934)
Q Consensus 617 ~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 692 (934)
..|+.+.. .+..+|..+...|...|++++|+..|+++.+. .|+ ...+..+..++.+.|++++|...|+.+.+..
T Consensus 238 ~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 315 (368)
T 1fch_A 238 DCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALEL--QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQ 315 (368)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 66665542 23445666666666666666666666666653 333 4455556666666666666666666655421
Q ss_pred CCC--C-------CcccHHHHHHHHhhcCChHHHHHHHH
Q 046194 693 GLI--P-------QLEQFSCMVDLLGRAGELDKIEEFIN 722 (934)
Q Consensus 693 ~~~--p-------~~~~y~~li~~l~~~g~~~~A~~~~~ 722 (934)
.-. | ....|..+..+|.+.|+.++|..+++
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 316 RKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp HTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred CCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHH
Confidence 000 0 02445555555555555555555444
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=5.8e-16 Score=178.03 Aligned_cols=150 Identities=14% Similarity=0.109 Sum_probs=111.2
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHHH---cCCCCCHhHHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHH
Q 046194 526 EVSWNSMISGYIHNELLPKAMNLVWFMMQ---RGQRLDHFTFATVLSACASVATLERGMEVHACGVRACLEFDVVIGSAL 602 (934)
Q Consensus 526 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~---~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l 602 (934)
..+||+||++|++.|+.++|.++|.+|.+ .|+.||.+||+++|.+|++.|++++|.++|++|.+.|+.||+.+||+|
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 45899999999999999999999988764 467788888887777777777777777777777777777766666665
Q ss_pred HHHHHhcCCHHHHHHHhccCCCCCcccccHHHHHHHHcCCh-HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHH
Q 046194 603 VDMYSKCGRIDYASRFFDLMPVRNVYSWNSMISGYARHGHG-DKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEG 681 (934)
Q Consensus 603 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 681 (934)
|++ +++.|+. ++|.++|++|.+.|+.||.+||+++++++.+.+-++..
T Consensus 207 I~g-------------------------------lcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~V 255 (1134)
T 3spa_A 207 LQC-------------------------------MGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAV 255 (1134)
T ss_dssp HHH-------------------------------HHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHH
T ss_pred HHH-------------------------------HHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHH
Confidence 554 4555553 67888999999999999999999999877775444444
Q ss_pred HHHHHHhHHhhCCCCC------cccHHHHHHHHhhcC
Q 046194 682 FKHFKSMSQVYGLIPQ------LEQFSCMVDLLGRAG 712 (934)
Q Consensus 682 ~~~~~~m~~~~~~~p~------~~~y~~li~~l~~~g 712 (934)
+.+.. ++.|+ ..+...|.+.|.+.+
T Consensus 256 ----rkv~P--~f~p~~~~~~~~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 256 ----HKVKP--TFSLPPQLPPPVNTSKLLRDVYAKDG 286 (1134)
T ss_dssp ----GGGCC--CCCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred ----HHhCc--ccCCCCCCcccccchHHHHHHHccCC
Confidence 44433 33333 455566788888766
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.6e-12 Score=148.38 Aligned_cols=351 Identities=10% Similarity=-0.008 Sum_probs=287.9
Q ss_pred CccchHHHHHHHHh----CCccHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhc----cCCchHHHHHHHHHHHhcCCCc
Q 046194 422 DQVSWNSVIGAFAD----SEALVSEAVKYYLDMRRAGWSPNGVTFINILAAASS----FSMGKLGHQVHAQVIKYNVANE 493 (934)
Q Consensus 422 ~~~~~~~li~~~~~----~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~~~~~~a~~i~~~~~~~g~~~~ 493 (934)
+..++..+...|.. .++. ++|+..|++..+.| +...+..+-..+.. .++.+.|.+.+....+.| +
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~-~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~ 110 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDL-TQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---L 110 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCH-HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---C
T ss_pred CHHHHHHHHHHHHcCCCCCcCH-HHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---C
Confidence 44455555555665 7888 99999999998764 44566666677777 889999999999998875 5
Q ss_pred hhHHHHHHHHHHh----cCCHHHHHHHHHhhccCCCcchHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHhHHH
Q 046194 494 TTIENALLSCYGK----CGEMDDCEKIFARMSERRDEVSWNSMISGYIH----NELLPKAMNLVWFMMQRGQRLDHFTFA 565 (934)
Q Consensus 494 ~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~ 565 (934)
...+..|..+|.. .+++++|...|++..+..+...+..+...|.. .++.++|++.|++..+.| +...+.
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~ 187 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCN 187 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 5667778888988 88999999999998776577788888888887 789999999999998875 566777
Q ss_pred HHHHHHhc----hhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHh----cCCHHHHHHHhccCCC-CCcccccHHHHH
Q 046194 566 TVLSACAS----VATLERGMEVHACGVRACLEFDVVIGSALVDMYSK----CGRIDYASRFFDLMPV-RNVYSWNSMISG 636 (934)
Q Consensus 566 ~ll~a~~~----~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~ 636 (934)
.+-..+.. .++.++|.+.+....+.+ +......|..+|.. .++.++|...|+...+ .+..++..+...
T Consensus 188 ~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~ 264 (490)
T 2xm6_A 188 QLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYI 264 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 77777776 789999999999998865 56677788888886 8999999999998764 455677778888
Q ss_pred HHH----cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhh-----CcHHHHHHHHHHhHHhhCCCCCcccHHHHHHH
Q 046194 637 YAR----HGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHA-----GLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDL 707 (934)
Q Consensus 637 ~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~-----g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~ 707 (934)
|.. .++.++|+..|++..+.| +...+..+...+... ++.++|..+|+...+. .+...+..|..+
T Consensus 265 y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~ 337 (490)
T 2xm6_A 265 LEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ----GDATAQANLGAI 337 (490)
T ss_dssp HHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT----TCHHHHHHHHHH
T ss_pred HHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc----CCHHHHHHHHHH
Confidence 887 899999999999998865 445566677777776 8999999999998873 345678888888
Q ss_pred HhhcC---ChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----ccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHc--
Q 046194 708 LGRAG---ELDKIEEFINKMPITPNSLIWRTVLGACCR----ANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYAS-- 778 (934)
Q Consensus 708 l~~~g---~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~-- 778 (934)
|.+.| ++++|.+++++.-...++..+..|...+.. . ++.++|...++++.+.. ++..+..|+.+|..
T Consensus 338 y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~--~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~ 413 (490)
T 2xm6_A 338 YFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVK--KDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGL 413 (490)
T ss_dssp HHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSC--CCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTS
T ss_pred HHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCC--CCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCC
Confidence 88767 889999999987333578888899988888 6 89999999999998864 57889999999999
Q ss_pred --CCChHHHHHHHHHHHhCC
Q 046194 779 --GGKWEDVAKARKAMKEAE 796 (934)
Q Consensus 779 --~g~~~~a~~~~~~m~~~~ 796 (934)
.++.++|.+.+++..+.+
T Consensus 414 g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 414 GVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp SSCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHCC
Confidence 899999999999988765
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.59 E-value=4.9e-14 Score=151.29 Aligned_cols=255 Identities=8% Similarity=-0.076 Sum_probs=176.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHh
Q 046194 529 WNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSK 608 (934)
Q Consensus 529 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~ 608 (934)
|..+...+...|++++|+.+|+++.... +.+...+..+..++...|++++|.+.+..+.+.. +.+...+..+...|..
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 101 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHH
Confidence 3444444444455555555554444431 1133344444444444555555555555444432 1234455555666666
Q ss_pred cCCHHHHHHHhccCCC--C-CcccccHH--------------HH-HHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 046194 609 CGRIDYASRFFDLMPV--R-NVYSWNSM--------------IS-GYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLS 670 (934)
Q Consensus 609 ~g~~~~A~~~~~~~~~--~-~~~~~~~l--------------i~-~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 670 (934)
.|++++|.+.|+.+.. | +...+..+ .. .+...|++++|+..++++.+.. +.+...+..+..
T Consensus 102 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 180 (327)
T 3cv0_A 102 EHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGV 180 (327)
T ss_dssp TTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 6666666666655432 1 11222222 22 3677889999999999999853 335677888888
Q ss_pred HHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCc
Q 046194 671 ACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCRANCRKT 748 (934)
Q Consensus 671 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~ 748 (934)
.+...|++++|.++++.+.+. .+.+...+..+...+.+.|++++|.+.++++ ...| +..+|..+...+... |+.
T Consensus 181 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~--g~~ 256 (327)
T 3cv0_A 181 LYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNM--SQY 256 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--TCH
T ss_pred HHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh--ccH
Confidence 999999999999999999873 2234778999999999999999999999987 3444 577899999999999 999
Q ss_pred HHHHHHHHHHHhcCCC------------CCchHHHHHHHHHcCCChHHHHHHHH
Q 046194 749 ELGRKAANMLFEMEPQ------------NAVNYVLLANMYASGGKWEDVAKARK 790 (934)
Q Consensus 749 ~~a~~~~~~~~~~~p~------------~~~~y~~l~~~~~~~g~~~~a~~~~~ 790 (934)
+.|...+++++++.|+ ++..+..++.+|...|++++|.++++
T Consensus 257 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 310 (327)
T 3cv0_A 257 DLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYA 310 (327)
T ss_dssp HHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 9999999999999999 78899999999999999999988755
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.56 E-value=9.5e-14 Score=145.83 Aligned_cols=244 Identities=11% Similarity=-0.001 Sum_probs=198.0
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCH--hHHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCC
Q 046194 534 SGYIHNELLPKAMNLVWFMMQRGQRLDH--FTFATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGR 611 (934)
Q Consensus 534 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~ 611 (934)
.-....|++.+|+..+++... ..|+. .....+.+++...|+++.|...++. .-+|+...+..+...|...|+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~--~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~ 80 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKP--SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSR 80 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTT
T ss_pred HHHHHHHHHHHHHHHHHhccc--CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCc
Confidence 345568999999998877543 34543 3556678899999999999875543 245677888899999999999
Q ss_pred HHHHHHHhccCC----CC-CcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHHHHHHH
Q 046194 612 IDYASRFFDLMP----VR-NVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGFKHFK 686 (934)
Q Consensus 612 ~~~A~~~~~~~~----~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 686 (934)
.++|.+.++++. .| +...+..+...|.+.|++++|++.|++ ..+...+..+...+.+.|++++|.+.|+
T Consensus 81 ~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 154 (291)
T 3mkr_A 81 RDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELK 154 (291)
T ss_dssp HHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999864 24 445677778899999999999999987 3556778888889999999999999999
Q ss_pred HhHHhhCCCCCcccH---HHHHHHHhhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhc
Q 046194 687 SMSQVYGLIPQLEQF---SCMVDLLGRAGELDKIEEFINKM--PITPNSLIWRTVLGACCRANCRKTELGRKAANMLFEM 761 (934)
Q Consensus 687 ~m~~~~~~~p~~~~y---~~li~~l~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~ 761 (934)
.+.+. .|+.... ...+..+...|++++|.++|+++ ..+++...|+.+..++... |++++|+..+++++++
T Consensus 155 ~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~--g~~~eA~~~l~~al~~ 229 (291)
T 3mkr_A 155 KMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQ--GRWEAAEGVLQEALDK 229 (291)
T ss_dssp HHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHH
T ss_pred HHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHh
Confidence 99874 4663211 23345555669999999999998 3345788899999999999 9999999999999999
Q ss_pred CCCCCchHHHHHHHHHcCCChHH-HHHHHHHHHh
Q 046194 762 EPQNAVNYVLLANMYASGGKWED-VAKARKAMKE 794 (934)
Q Consensus 762 ~p~~~~~y~~l~~~~~~~g~~~~-a~~~~~~m~~ 794 (934)
+|+++..+..++.++...|++++ +.++++++.+
T Consensus 230 ~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 230 DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 99999999999999999999987 5678777764
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.56 E-value=8.7e-14 Score=152.23 Aligned_cols=231 Identities=10% Similarity=0.023 Sum_probs=194.4
Q ss_pred CHhHHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCC---CCcccccHHHHH
Q 046194 560 DHFTFATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPV---RNVYSWNSMISG 636 (934)
Q Consensus 560 ~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 636 (934)
+...+......+.+.|++++|...++.+++.. +.+..++..+...|.+.|++++|...|+++.. .+..+|..+...
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 34557888889999999999999999999864 33688899999999999999999999998763 356799999999
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCh-hhH----------HHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHH
Q 046194 637 YARHGHGDKALTLFSQMKLDGPLPDH-VTF----------VGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMV 705 (934)
Q Consensus 637 ~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~----------~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li 705 (934)
|...|++++|+..|+++.+. .|+. ..+ ..+...+...|++++|..+|+++.+...-.++...+..+.
T Consensus 143 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 99999999999999999984 4542 222 2346788999999999999999988532222578899999
Q ss_pred HHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChH
Q 046194 706 DLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWE 783 (934)
Q Consensus 706 ~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~ 783 (934)
.+|.+.|++++|.+.++++ ...| +..+|..+...+... |+++.|...+++++++.|+++..|..++.+|...|+++
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANG--DRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 9999999999999999987 3444 578999999999999 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhC
Q 046194 784 DVAKARKAMKEA 795 (934)
Q Consensus 784 ~a~~~~~~m~~~ 795 (934)
+|.+.++++.+.
T Consensus 299 ~A~~~~~~al~~ 310 (365)
T 4eqf_A 299 EAVSNFLTALSL 310 (365)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999988753
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.52 E-value=1.3e-12 Score=140.09 Aligned_cols=258 Identities=10% Similarity=-0.019 Sum_probs=162.7
Q ss_pred ccchHHHHHHHHhCCccHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhcCCCchhHHHHHHH
Q 046194 423 QVSWNSVIGAFADSEALVSEAVKYYLDMRRAGWSPNGVTFINILAAASSFSMGKLGHQVHAQVIKYNVANETTIENALLS 502 (934)
Q Consensus 423 ~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~ 502 (934)
...|..+...+...|++ ++|+.+|+++.+.. +.+...+..+..
T Consensus 21 ~~~~~~~a~~~~~~~~~-~~A~~~~~~~~~~~------------------------------------~~~~~~~~~l~~ 63 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANL-AEAALAFEAVCQAA------------------------------------PEREEAWRSLGL 63 (327)
T ss_dssp SSCHHHHHHHHHHTTCH-HHHHHHHHHHHHHC------------------------------------TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccH-HHHHHHHHHHHHhC------------------------------------CCCHHHHHHHHH
Confidence 34455556666666666 66666666665432 123344556666
Q ss_pred HHHhcCCHHHHHHHHHhhccC-C-CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHH------------
Q 046194 503 CYGKCGEMDDCEKIFARMSER-R-DEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVL------------ 568 (934)
Q Consensus 503 ~~~~~g~~~~A~~~~~~~~~~-p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll------------ 568 (934)
.|.+.|++++|...|++.... | +...|..+...|...|++++|++.|+++... .|+.......+
T Consensus 64 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 141 (327)
T 3cv0_A 64 TQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLS--QPQYEQLGSVNLQADVDIDDLNV 141 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--STTTTTC----------------
T ss_pred HHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHhHHHHHHHHHHH
Confidence 777777777777777766552 3 5556777777777888888888888777764 23222211111
Q ss_pred --HH--HhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCC---CCcccccHHHHHHHHcC
Q 046194 569 --SA--CASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPV---RNVYSWNSMISGYARHG 641 (934)
Q Consensus 569 --~a--~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g 641 (934)
.. +...|++++|.+.+..+.+... .+..++..+...|.+.|++++|.+.|+.+.. .+..+|..+...|...|
T Consensus 142 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 220 (327)
T 3cv0_A 142 QSEDFFFAAPNEYRECRTLLHAALEMNP-NDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGN 220 (327)
T ss_dssp ----CCTTSHHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHhHHHHHcccHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Confidence 22 6677888888888887776542 2566677777777777777777777776542 23456677777777777
Q ss_pred ChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC-------------cccHHHHHHHH
Q 046194 642 HGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ-------------LEQFSCMVDLL 708 (934)
Q Consensus 642 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-------------~~~y~~li~~l 708 (934)
++++|+..|+++.+.. +.+..++..+...+...|++++|.+.|+.+.+. .|+ ...|..+..++
T Consensus 221 ~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~ 296 (327)
T 3cv0_A 221 RPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYM---QVGGTTPTGEASREATRSMWDFFRMLL 296 (327)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HTTSCC-----CCTHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCccccccccchhhcCHHHHHHHHHHH
Confidence 7777777777776642 223555666666777777777777777776653 222 44566666666
Q ss_pred hhcCChHHHHHHHHhC
Q 046194 709 GRAGELDKIEEFINKM 724 (934)
Q Consensus 709 ~~~g~~~~A~~~~~~m 724 (934)
.+.|++++|.+++++.
T Consensus 297 ~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 297 NVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHTTCHHHHHHHTTCC
T ss_pred HhcCCHHHHHHHHHHH
Confidence 6666666666666543
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=6.8e-12 Score=142.44 Aligned_cols=388 Identities=11% Similarity=-0.043 Sum_probs=223.3
Q ss_pred cccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCchHHHHHHHHHHhhhCC-CCchhHHHHHHH
Q 046194 322 SVSWNTMISGLDQNGCYEEAIMNFCAMRRDGLMSSNFSLISTLSSCASLGWIMLGQQIHGEGLKLGL-DSDVSVSNALLS 400 (934)
Q Consensus 322 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~-~~~~~~~~~li~ 400 (934)
...||.|...+...|++++|++.|++..+. ......... +....+|+.+..
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~----------------------------~~~~~~~~~~~~~~~~~~nla~ 102 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEEL----------------------------IQQEHADQAEIRSLVTWGNYAW 102 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------------------HHHHSGGGCTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH----------------------------HHhcCccccchHHHHHHHHHHH
Confidence 456899999999999999999999876541 111111111 123345677777
Q ss_pred HHHhcCChHHHHHHHhhCCC-------C----CccchHHHHHHHHh--CCccHHHHHHHHHHHHHcCCCCCcc-cHHHHH
Q 046194 401 LYADAGYLSRCLKVFFLMPE-------H----DQVSWNSVIGAFAD--SEALVSEAVKYYLDMRRAGWSPNGV-TFINIL 466 (934)
Q Consensus 401 ~y~~~g~~~~A~~~f~~~~~-------~----~~~~~~~li~~~~~--~g~~~~~A~~l~~~m~~~g~~p~~~-t~~~ll 466 (934)
+|...|++++|...|++..+ + ...++..+..++.. .+++ ++|++.|++..+. .|+.. .+..+.
T Consensus 103 ~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y-~~A~~~~~kal~~--~p~~~~~~~~~~ 179 (472)
T 4g1t_A 103 VYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQN-ERAKVCFEKALEK--KPKNPEFTSGLA 179 (472)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHH-HHHHHHHHHHHHH--STTCHHHHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccH-HHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 77778888777777665421 1 12344444444444 3467 9999999998875 45543 333333
Q ss_pred HH---HhccCCchHHHHHHHHHHHhcCCCchhHHHHHHHHHHh----cCCHHHHHHHHHhhccC-C-CcchHHHHHHHHH
Q 046194 467 AA---ASSFSMGKLGHQVHAQVIKYNVANETTIENALLSCYGK----CGEMDDCEKIFARMSER-R-DEVSWNSMISGYI 537 (934)
Q Consensus 467 ~a---~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~-p-~~~~~~~li~~~~ 537 (934)
.+ ....++.+.+.+.+...++... .+..++..+...+.. .|+.++|.+.+++.... | +...|..+...|.
T Consensus 180 ~~~~~l~~~~~~~~al~~~~~al~l~p-~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~ 258 (472)
T 4g1t_A 180 IASYRLDNWPPSQNAIDPLRQAIRLNP-DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYR 258 (472)
T ss_dssp HHHHHHHHSCCCCCTHHHHHHHHHHCS-SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHhcCchHHHHHHHHHHHHhhcCC-cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 33 3456777888888888877643 234445545444443 46778899888876552 3 5667888889999
Q ss_pred hcCChhHHHHHHHHHHHcCCCCC-HhHHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHH
Q 046194 538 HNELLPKAMNLVWFMMQRGQRLD-HFTFATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYAS 616 (934)
Q Consensus 538 ~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~ 616 (934)
..|++++|+..|.+.... .|+ ..++..+...+...+....+.. ...........+..+.|.
T Consensus 259 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~y~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~A~ 320 (472)
T 4g1t_A 259 RKDEPDKAIELLKKALEY--IPNNAYLHCQIGCCYRAKVFQVMNLR----------------ENGMYGKRKLLELIGHAV 320 (472)
T ss_dssp HTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHC----------------------CHHHHHHHHHHHH
T ss_pred HcCchHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHhhhHH----------------HHHHHHHHHHHhhHHHHH
Confidence 999999999999998874 454 3444444333322211111000 000111111223356677
Q ss_pred HHhccCC---CCCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChh--hHHHHHH-HHHhhCcHHHHHHHHHHhHH
Q 046194 617 RFFDLMP---VRNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHV--TFVGVLS-ACSHAGLVDEGFKHFKSMSQ 690 (934)
Q Consensus 617 ~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~-a~~~~g~~~~a~~~~~~m~~ 690 (934)
..|+... ..+..+|..+...|...|++++|+..|++..+....|... .+..+.. ...+.|+.++|+..|++..+
T Consensus 321 ~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~ 400 (472)
T 4g1t_A 321 AHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK 400 (472)
T ss_dssp HHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 7776654 3456688899999999999999999999999854333221 1222322 24578999999999998876
Q ss_pred hhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCch
Q 046194 691 VYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVN 768 (934)
Q Consensus 691 ~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 768 (934)
+.|+....... .+.+.+++++. ...| ++.+|..|...+... |+.++|...+++++++.|.+|..
T Consensus 401 ---i~~~~~~~~~~---------~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~--g~~~~A~~~y~kALe~~~~~p~a 466 (472)
T 4g1t_A 401 ---INQKSREKEKM---------KDKLQKIAKMRLSKNGADSEALHVLAFLQELN--EKMQQADEDSERGLESGSLIPSA 466 (472)
T ss_dssp ---SCCCCHHHHHH---------HHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHH--HHCC-------------------
T ss_pred ---cCcccHHHHHH---------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCCCCcH
Confidence 56664332222 23334444443 2233 567899999999999 99999999999999999999887
Q ss_pred HHHHH
Q 046194 769 YVLLA 773 (934)
Q Consensus 769 y~~l~ 773 (934)
+.-+|
T Consensus 467 ~~~~G 471 (472)
T 4g1t_A 467 SSWNG 471 (472)
T ss_dssp -----
T ss_pred hhcCC
Confidence 76554
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.48 E-value=5e-13 Score=133.85 Aligned_cols=194 Identities=15% Similarity=0.073 Sum_probs=155.4
Q ss_pred CCcHhHHHHHHHHHHhcCCHHHHHHHhccCCC---CCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHH
Q 046194 593 EFDVVIGSALVDMYSKCGRIDYASRFFDLMPV---RNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPD-HVTFVGV 668 (934)
Q Consensus 593 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~l 668 (934)
+++...+..+...+.+.|++++|...|+.... .+...|..+...+.+.|++++|+..|++..+. .|+ ...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHH
Confidence 34666777888889999999999999987653 35568888999999999999999999999984 566 5677888
Q ss_pred HHHHHhh-----------CcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhhcCChHHHHHHHHhC-CCCCCHHHHHH
Q 046194 669 LSACSHA-----------GLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGRAGELDKIEEFINKM-PITPNSLIWRT 735 (934)
Q Consensus 669 l~a~~~~-----------g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p~~~~~~~ 735 (934)
...+... |++++|+..|++..+ +.|+ ...+..+..+|...|++++|.+.+++. .+..++..|..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAER---VNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHH
Confidence 8888899 999999999999987 3565 778889999999999999999999987 22278889999
Q ss_pred HHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHH
Q 046194 736 VLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMK 793 (934)
Q Consensus 736 ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~ 793 (934)
+...+... |+.++|...++++++++|+++..+..++.+|...|++++|.+.+++..
T Consensus 157 la~~~~~~--g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 157 LAELYLSM--GRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHH--TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHc--CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 99999999 999999999999999999999999999999999999999988766543
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.9e-12 Score=133.41 Aligned_cols=223 Identities=10% Similarity=0.040 Sum_probs=158.8
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHH
Q 046194 527 VSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVDMY 606 (934)
Q Consensus 527 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y 606 (934)
..|..+...+...|++++|+..|++..... .+...+..+..++...|++++|...+..+++.....
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~------------ 71 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREM------------ 71 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT------------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc------------
Confidence 345566666666667777776666666554 444444444444545555555554444443321000
Q ss_pred HhcCCHHHHHHHhccCCCCC----cccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHHH
Q 046194 607 SKCGRIDYASRFFDLMPVRN----VYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGF 682 (934)
Q Consensus 607 ~~~g~~~~A~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 682 (934)
.++ ..+|..+...|...|++++|+..|+++.+. .|+. ..+...|++++|.
T Consensus 72 -----------------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~ 125 (258)
T 3uq3_A 72 -----------------RADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKEL 125 (258)
T ss_dssp -----------------TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHH
T ss_pred -----------------ccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHH
Confidence 001 345666777777788888888888887773 4553 3455678888888
Q ss_pred HHHHHhHHhhCCCCC-cccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHH
Q 046194 683 KHFKSMSQVYGLIPQ-LEQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCRANCRKTELGRKAANMLF 759 (934)
Q Consensus 683 ~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~ 759 (934)
..++.+.. ..|+ ...+..+...+.+.|++++|.+.++++ ...| +..+|..+...+... |+++.|...+++++
T Consensus 126 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~--~~~~~A~~~~~~al 200 (258)
T 3uq3_A 126 KKAEAEAY---VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKL--MSFPEAIADCNKAI 200 (258)
T ss_dssp HHHHHHHH---CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred HHHHHHHH---cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh--CCHHHHHHHHHHHH
Confidence 88888876 2343 667888888889999999999988887 3333 577888888888888 99999999999999
Q ss_pred hcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHHh
Q 046194 760 EMEPQNAVNYVLLANMYASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 760 ~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 794 (934)
++.|+++..|..++.+|...|++++|.+.++...+
T Consensus 201 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 201 EKDPNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999887764
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.44 E-value=2.1e-12 Score=133.05 Aligned_cols=235 Identities=12% Similarity=0.038 Sum_probs=161.5
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhhccC-CCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCC--CCC----HhHHHH
Q 046194 494 TTIENALLSCYGKCGEMDDCEKIFARMSER-RDEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQ--RLD----HFTFAT 566 (934)
Q Consensus 494 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~--~p~----~~t~~~ 566 (934)
...+..+...|.+.|++++|...|++..+. ++...|..+...|...|++++|+..|++...... .|+ ..++..
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 456788899999999999999999987542 4778899999999999999999999999876421 112 234444
Q ss_pred HHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCCCCcccccHHHHHHHHcCChHHH
Q 046194 567 VLSACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPVRNVYSWNSMISGYARHGHGDKA 646 (934)
Q Consensus 567 ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 646 (934)
+...+...|++++|...+..+.+.. |+ ...+...|++++|
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~---------------------------------~~-------~~~~~~~~~~~~a 124 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEH---------------------------------RT-------ADILTKLRNAEKE 124 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC---------------------------------CC-------HHHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcC---------------------------------ch-------hHHHHHHhHHHHH
Confidence 4444444455555555444444422 11 2345556667777
Q ss_pred HHHHHHHHHCCCCCC-hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhC-
Q 046194 647 LTLFSQMKLDGPLPD-HVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKM- 724 (934)
Q Consensus 647 ~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m- 724 (934)
+..++++... .|+ ...+..+...+...|++++|...|+...+. .+.+...|..+..+|.+.|++++|.+.+++.
T Consensus 125 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 200 (258)
T 3uq3_A 125 LKKAEAEAYV--NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAI 200 (258)
T ss_dssp HHHHHHHHHC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHc--CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 7777777763 344 445666666777777777777777777663 2223666777777788888888888777766
Q ss_pred CCCC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcC------CCCCchHHHHHH
Q 046194 725 PITP-NSLIWRTVLGACCRANCRKTELGRKAANMLFEME------PQNAVNYVLLAN 774 (934)
Q Consensus 725 ~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~------p~~~~~y~~l~~ 774 (934)
...| +..+|..+...+... |+.+.|...+++++++. |.+...+..+..
T Consensus 201 ~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 201 EKDPNFVRAYIRKATAQIAV--KEYASALETLDAARTKDAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp HHCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHH
Confidence 3334 466777777777777 88888888888888887 766555555443
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.40 E-value=7.1e-12 Score=130.62 Aligned_cols=240 Identities=8% Similarity=-0.150 Sum_probs=176.0
Q ss_pred cCChhHHHHHHHHHHHcCC--CC-CHhHHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHH
Q 046194 539 NELLPKAMNLVWFMMQRGQ--RL-DHFTFATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYA 615 (934)
Q Consensus 539 ~g~~~~A~~l~~~m~~~g~--~p-~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A 615 (934)
.|++++|+..|+++..... .| +..++..+...+...|++++|...+..+++.. +.+..++..+...|...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 4556666666666665421 11 23455555666666666666666666666643 22566777788888888888888
Q ss_pred HHHhccCCC---CCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHHHHHHHHhHHhh
Q 046194 616 SRFFDLMPV---RNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGFKHFKSMSQVY 692 (934)
Q Consensus 616 ~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 692 (934)
...|+.... .+..+|..+...|...|++++|+..|+++.+ ..|+.......+..+...|++++|...++.....
T Consensus 97 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~- 173 (275)
T 1xnf_A 97 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ--DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK- 173 (275)
T ss_dssp HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc-
Confidence 888887653 3566888899999999999999999999998 4677665555666677889999999999888774
Q ss_pred CCCCCcccHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCC
Q 046194 693 GLIPQLEQFSCMVDLLGRAGELDKIEEFINKM-PITPN-----SLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNA 766 (934)
Q Consensus 693 ~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p~-----~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 766 (934)
.+++...+ .++..+...++.++|.+.+++. ...|+ ..+|..+...+... |+.+.|...++++++++|++.
T Consensus 174 -~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~p~~~ 249 (275)
T 1xnf_A 174 -SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSL--GDLDSATALFKLAVANNVHNF 249 (275)
T ss_dssp -SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHTTCCTTC
T ss_pred -CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHc--CCHHHHHHHHHHHHhCCchhH
Confidence 33444444 4777888888999999999886 33342 56788888999988 999999999999999999875
Q ss_pred chHHHHHHHHHcCCChHHHHHHH
Q 046194 767 VNYVLLANMYASGGKWEDVAKAR 789 (934)
Q Consensus 767 ~~y~~l~~~~~~~g~~~~a~~~~ 789 (934)
..+ +.++...|++++|.+.+
T Consensus 250 ~~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 250 VEH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHH---HHHHHHHHHHHHC----
T ss_pred HHH---HHHHHHHHHHHhhHHHH
Confidence 544 66788888898886653
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.39 E-value=6.4e-12 Score=130.81 Aligned_cols=245 Identities=8% Similarity=-0.019 Sum_probs=137.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhccC-C-CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH--hHHHHHHHHHh
Q 046194 497 ENALLSCYGKCGEMDDCEKIFARMSER-R-DEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDH--FTFATVLSACA 572 (934)
Q Consensus 497 ~~~li~~~~~~g~~~~A~~~~~~~~~~-p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~ 572 (934)
.......+.+.|++++|...|++..+. | +...|..+...|...|++++|+..|++.......|+. ..+..+...+.
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~ 85 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILM 85 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence 345566777788888888888877653 4 4447777777888888888888888887763322221 22555555556
Q ss_pred chhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCCCCcccccHHHHHHHHcCChHHHHHHHHH
Q 046194 573 SVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPVRNVYSWNSMISGYARHGHGDKALTLFSQ 652 (934)
Q Consensus 573 ~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 652 (934)
..|++++|...+..+.+.... +..++..+...|...|++++|...|++..
T Consensus 86 ~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al----------------------------- 135 (272)
T 3u4t_A 86 KKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQI----------------------------- 135 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGC-----------------------------
T ss_pred HcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHh-----------------------------
Confidence 666666666666665553211 33445555555555555555555555443
Q ss_pred HHHCCCCCC-hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhhcCC---hHHHHHHHHhC---
Q 046194 653 MKLDGPLPD-HVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGRAGE---LDKIEEFINKM--- 724 (934)
Q Consensus 653 m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~---~~~A~~~~~~m--- 724 (934)
+. .|+ ...+..+...+...+++++|.+.|+.+.+. .|+ ...+..+..++...|+ +++|...+++.
T Consensus 136 --~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 208 (272)
T 3u4t_A 136 --RP--TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL---KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEV 208 (272)
T ss_dssp --CS--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHH
T ss_pred --hc--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHH
Confidence 32 232 222222221222333555555555554442 222 3344444444444444 44444444433
Q ss_pred -CCCCC------HHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCC
Q 046194 725 -PITPN------SLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGG 780 (934)
Q Consensus 725 -~~~p~------~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g 780 (934)
...|+ ..+|..+...+... |+.+.|...++++++++|+++.....+..+....+
T Consensus 209 ~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 209 CAPGGAKYKDELIEANEYIAYYYTIN--RDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HGGGGGGGHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred HhcccccchHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 11122 24566777777777 99999999999999999999887777766655443
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.34 E-value=3.1e-11 Score=123.91 Aligned_cols=196 Identities=11% Similarity=0.002 Sum_probs=156.3
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHhccCCC---CCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 046194 596 VVIGSALVDMYSKCGRIDYASRFFDLMPV---RNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSAC 672 (934)
Q Consensus 596 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 672 (934)
...+..+...|...|++++|...|+.+.. .+...|..+...|...|++++|++.|+++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 45667777788888888888888887652 345678888888888889999999998888753 23456677777888
Q ss_pred HhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCcH
Q 046194 673 SHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCRANCRKTE 749 (934)
Q Consensus 673 ~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~ 749 (934)
...|++++|.++|+.+.+ .+..|+ ...+..+..+|.+.|++++|.+.++++ ...| +...|..+...+... |+.+
T Consensus 116 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~--g~~~ 192 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKE--REYV 192 (252)
T ss_dssp HHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT--TCHH
T ss_pred HHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHc--CCHH
Confidence 888999999999888876 234454 667788888888999999999888876 3334 467788888888888 8999
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 046194 750 LGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMKEA 795 (934)
Q Consensus 750 ~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~ 795 (934)
.|...++++++..|+++..+..++.+|...|++++|.+.++.+.+.
T Consensus 193 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 193 PARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 9999999999999988888999999999999999999888888753
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.32 E-value=5.5e-11 Score=119.44 Aligned_cols=196 Identities=11% Similarity=-0.029 Sum_probs=143.1
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHhccCCC---CCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 046194 595 DVVIGSALVDMYSKCGRIDYASRFFDLMPV---RNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSA 671 (934)
Q Consensus 595 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 671 (934)
+...+..+...|...|++++|.+.|+.+.. .+...|..+...|...|++++|+..|+++.+.. +.+..++..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 455566667777777777777777776542 345567777777788888888888888877742 2245567777777
Q ss_pred HHhh-CcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCC
Q 046194 672 CSHA-GLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCRANCRK 747 (934)
Q Consensus 672 ~~~~-g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~ 747 (934)
+... |++++|..+|+.+.+ .+..|+ ...+..+..++.+.|++++|.+.++++ ...| +...|..+...+... |+
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~--~~ 162 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLA--GQ 162 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH--TC
T ss_pred HHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHc--CC
Confidence 7788 888888888888776 233344 566777788888888888888888776 3334 466777777777777 88
Q ss_pred cHHHHHHHHHHHhcCC-CCCchHHHHHHHHHcCCChHHHHHHHHHHHh
Q 046194 748 TELGRKAANMLFEMEP-QNAVNYVLLANMYASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 748 ~~~a~~~~~~~~~~~p-~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 794 (934)
.+.|...++++++..| +++..+..++.++...|+.++|...++.+.+
T Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 8888888888888888 7778888888888888888888888777754
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.30 E-value=1.2e-10 Score=119.59 Aligned_cols=208 Identities=11% Similarity=-0.028 Sum_probs=140.7
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHH
Q 046194 526 EVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVDM 605 (934)
Q Consensus 526 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~ 605 (934)
...|..+...|...|++++|+..|+++.... +.+...+..+...+...|++++|.+.+..+.+..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-------------- 101 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-------------- 101 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--------------
Confidence 4567777788888888888888888887642 2233444444444444444444444444443321
Q ss_pred HHhcCCHHHHHHHhccCCCCCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhCcHHHHHHH
Q 046194 606 YSKCGRIDYASRFFDLMPVRNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPD-HVTFVGVLSACSHAGLVDEGFKH 684 (934)
Q Consensus 606 y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~ 684 (934)
..+...|..+...|...|++++|++.|+++.+.+..|+ ...+..+...+...|++++|..+
T Consensus 102 ------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 163 (252)
T 2ho1_A 102 ------------------SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEY 163 (252)
T ss_dssp ------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ------------------cCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 12344556666667777777777777777766333454 45566677777888888888888
Q ss_pred HHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcC
Q 046194 685 FKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCRANCRKTELGRKAANMLFEME 762 (934)
Q Consensus 685 ~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~ 762 (934)
|+.+.+. .+.+...+..+..+|.+.|++++|.+.++++ ...| +...|..+...+... |+.+.|...++++.++.
T Consensus 164 ~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 164 FEKSLRL--NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVF--EDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHC
T ss_pred HHHHHhc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHc--cCHHHHHHHHHHHHHHC
Confidence 8887763 2223667778888888888888888888876 3343 566777777777777 89999999999999999
Q ss_pred CCCCchHH
Q 046194 763 PQNAVNYV 770 (934)
Q Consensus 763 p~~~~~y~ 770 (934)
|+++....
T Consensus 240 p~~~~~~~ 247 (252)
T 2ho1_A 240 PGSLEYQE 247 (252)
T ss_dssp TTSHHHHH
T ss_pred CCCHHHHH
Confidence 98766543
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.30 E-value=7.5e-11 Score=127.97 Aligned_cols=242 Identities=10% Similarity=0.045 Sum_probs=170.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhchhh-HHHHHHHHHHHHHhCCCCcHhHHHHHHHH
Q 046194 528 SWNSMISGYIHNELLPKAMNLVWFMMQRGQRL-DHFTFATVLSACASVAT-LERGMEVHACGVRACLEFDVVIGSALVDM 605 (934)
Q Consensus 528 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~~~-~~~a~~i~~~~~~~~~~~~~~~~~~li~~ 605 (934)
.|+.+...+.+.|++++|++.|++.+.. .| +...|..+..++...|+ +++|...++.+++.... +...++.+..+
T Consensus 99 a~~~lg~~~~~~g~~~~Al~~~~~al~l--~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~~ 175 (382)
T 2h6f_A 99 VYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
Confidence 3455555555556666666666655553 23 23444455555555554 66666666555554322 56677777777
Q ss_pred HHhcCCHHHHHHHhccCCC---CCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHh-hCcHHH
Q 046194 606 YSKCGRIDYASRFFDLMPV---RNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPD-HVTFVGVLSACSH-AGLVDE 680 (934)
Q Consensus 606 y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~-~g~~~~ 680 (934)
|.+.|++++|+..|+.+.. .+...|..+..++...|++++|+..|+++++. .|+ ...|..+..++.. .|..++
T Consensus 176 ~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcchH
Confidence 8888888888888887763 45668888888888999999999999999884 555 5678778878877 566566
Q ss_pred H-----HHHHHHhHHhhCCCCC-cccHHHHHHHHhhcC--ChHHHHHHHHhCCCCCC-HHHHHHHHHHHHhccCC-----
Q 046194 681 G-----FKHFKSMSQVYGLIPQ-LEQFSCMVDLLGRAG--ELDKIEEFINKMPITPN-SLIWRTVLGACCRANCR----- 746 (934)
Q Consensus 681 a-----~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g--~~~~A~~~~~~m~~~p~-~~~~~~ll~~~~~~~~~----- 746 (934)
| +..|+...+ +.|+ ...|..+..+|.+.| ++++|.++++++...|+ ...+..|...+... |
T Consensus 254 A~~~~el~~~~~Al~---l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~--~~~~~~ 328 (382)
T 2h6f_A 254 AVLEREVQYTLEMIK---LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDM--LENQCD 328 (382)
T ss_dssp HHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHH--HHTTCS
T ss_pred HHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHH--hccccc
Confidence 6 477777766 4565 678888888888888 68899988888755554 56777888877775 4
Q ss_pred ----CcHHHHHHHHHH-HhcCCCCCchHHHHHHHHHcC
Q 046194 747 ----KTELGRKAANML-FEMEPQNAVNYVLLANMYASG 779 (934)
Q Consensus 747 ----~~~~a~~~~~~~-~~~~p~~~~~y~~l~~~~~~~ 779 (934)
..+.|..+++++ .+++|.....|..++..+...
T Consensus 329 ~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 329 NKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 258899999999 899999888888877765543
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.30 E-value=2.1e-10 Score=128.63 Aligned_cols=342 Identities=11% Similarity=0.028 Sum_probs=172.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhcccchhhhhhhhhhhhhHHHHHHHHHcCCCchhHHHHHHHHhhccCCh---hHHHH
Q 046194 236 ALVSGFARLGNFYYARKIFEQMIQKNVVSMNGLMEGRRKGKEVHGYLIRSGLFDMVAVGNGLVNMYAKCGTI---DDSRS 312 (934)
Q Consensus 236 ~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~---~~A~~ 312 (934)
.+...+.+.|++++|.++|++..+.+. +..+..|-.+|...|+. ++|..
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g~----------------------------~~A~~~Lg~~y~~~g~~~d~~~A~~ 59 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELGY----------------------------SEAQVGLADIQVGTRDPAQIKQAEA 59 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTC----------------------------CTGGGTCC-----------------
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCC----------------------------HHHHHHHHHHHHccCCCCCHHHHHH
Confidence 356777889999999999999865421 11112233455666777 89999
Q ss_pred HHhcCCCCCcccHHHHHHHHHhCC-----ChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCch---HHHHHHHHHHh
Q 046194 313 VFRFMIGKDSVSWNTMISGLDQNG-----CYEEAIMNFCAMRRDGLMSSNFSLISTLSSCASLGWI---MLGQQIHGEGL 384 (934)
Q Consensus 313 ~f~~~~~~~~~~~~~li~~~~~~g-----~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~---~~a~~i~~~~~ 384 (934)
.|++..+.+...+..+...+...| ++++|+..|++..+.|... .+..+-..+...+.. ..+.+.+....
T Consensus 60 ~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~ 136 (452)
T 3e4b_A 60 TYRAAADTSPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQ 136 (452)
T ss_dssp -----------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Confidence 999887777788888887666655 7789999999998876332 444444444333322 22334444444
Q ss_pred hhCCCCchhHHHHHHHHHHhcCC----hHHHHHHHhhCCCCCccchHHHHHHHHhCC---ccHHHHHHHHHHHHHcCCCC
Q 046194 385 KLGLDSDVSVSNALLSLYADAGY----LSRCLKVFFLMPEHDQVSWNSVIGAFADSE---ALVSEAVKYYLDMRRAGWSP 457 (934)
Q Consensus 385 ~~g~~~~~~~~~~li~~y~~~g~----~~~A~~~f~~~~~~~~~~~~~li~~~~~~g---~~~~~A~~l~~~m~~~g~~p 457 (934)
+.| +......|..+|...+. .+.+..+++.....+..++..|...|.+.| +. ++|++.|++..+.|..
T Consensus 137 ~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~-~~A~~~~~~aa~~g~~- 211 (452)
T 3e4b_A 137 AAG---YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQ-AELLKQMEAGVSRGTV- 211 (452)
T ss_dssp HHT---CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHH-HHHHHHHHHHHHTTCS-
T ss_pred HCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccH-HHHHHHHHHHHHCCCH-
Confidence 433 34456666777777663 444555555555555556667777777666 66 6777777666655421
Q ss_pred CcccHHHHHHHHhccCCchHHHHHHHHHHHhcCCCchhHHHHHHHHHHhc----CCHHHHHHHHHhhccCCCcchHHHHH
Q 046194 458 NGVTFINILAAASSFSMGKLGHQVHAQVIKYNVANETTIENALLSCYGKC----GEMDDCEKIFARMSERRDEVSWNSMI 533 (934)
Q Consensus 458 ~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~~~~~p~~~~~~~li 533 (934)
+...+..|..+|... ++.++|...|+... ..+...+..+.
T Consensus 212 -----------------------------------~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g~~~a~~~Lg 255 (452)
T 3e4b_A 212 -----------------------------------TAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PGYPASWVSLA 255 (452)
T ss_dssp -----------------------------------CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GGSTHHHHHHH
T ss_pred -----------------------------------HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CCCHHHHHHHH
Confidence 111122344444333 56667777776665 32555566655
Q ss_pred HH-H--HhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhchh-----hHHHHHHHHHHHHHhCCCCcHhHHHHHHHH
Q 046194 534 SG-Y--IHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVA-----TLERGMEVHACGVRACLEFDVVIGSALVDM 605 (934)
Q Consensus 534 ~~-~--~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~-----~~~~a~~i~~~~~~~~~~~~~~~~~~li~~ 605 (934)
.. | ...+++++|++.|++....| +...+..+-..|. .| +.++|.+.+.... ..++.....|..+
T Consensus 256 ~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa----~g~~~A~~~Lg~~ 327 (452)
T 3e4b_A 256 QLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV----GREVAADYYLGQI 327 (452)
T ss_dssp HHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT----TTCHHHHHHHHHH
T ss_pred HHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh----CCCHHHHHHHHHH
Confidence 55 3 34667777777777666554 2333333333332 22 4555555554444 1233444444444
Q ss_pred HHh----cCCHHHHHHHhccCCCC-CcccccHHHHHHHH----cCChHHHHHHHHHHHHCC
Q 046194 606 YSK----CGRIDYASRFFDLMPVR-NVYSWNSMISGYAR----HGHGDKALTLFSQMKLDG 657 (934)
Q Consensus 606 y~~----~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g 657 (934)
|.. ..+.++|...|+...++ +......|...|.. ..+.++|...|++..+.|
T Consensus 328 y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 328 YRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp HHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred HHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence 443 22555555555544322 23334444444432 234555555555555554
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.30 E-value=2.1e-11 Score=124.32 Aligned_cols=195 Identities=9% Similarity=0.059 Sum_probs=133.2
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHhccCCC---CCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 046194 595 DVVIGSALVDMYSKCGRIDYASRFFDLMPV---RNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSA 671 (934)
Q Consensus 595 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 671 (934)
....+..+...+...|++++|...|+++.. .+...|..+...|...|++++|+..|+++.+.. +.+...+..+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 445556666677777777777777776642 245577777778888888888888888887742 2245667777777
Q ss_pred HHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCcH
Q 046194 672 CSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCRANCRKTE 749 (934)
Q Consensus 672 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~ 749 (934)
+...|++++|.++|+++.+. .+.+...+..+...+.+.|++++|.+.++++ ...| +...|..+...+... |+.+
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~ 176 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANE--GMLD 176 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH--TCCH
T ss_pred HHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHc--CCHH
Confidence 88888888888888888763 2234667777888888888888888888876 3333 566777788888887 8888
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHHh
Q 046194 750 LGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 750 ~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 794 (934)
.|...++++++..|+++..+..++.+|...|++++|.+.++++.+
T Consensus 177 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 177 EALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 888888888888888888888888888888888888888887765
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.30 E-value=7.7e-11 Score=127.89 Aligned_cols=243 Identities=9% Similarity=0.034 Sum_probs=201.6
Q ss_pred hHHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCC-HHHHHHHhccCCC---CCcccccHHHHHH
Q 046194 562 FTFATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGR-IDYASRFFDLMPV---RNVYSWNSMISGY 637 (934)
Q Consensus 562 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~-~~~A~~~~~~~~~---~~~~~~~~li~~~ 637 (934)
..|..+...+...|++++|.+.++.+++... .+..+++.+...|.+.|+ +++|+..|++... .+...|+.+...|
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P-~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELNA-ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 4566666677888999999999999998642 267888999999999997 9999999998863 4567999999999
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhh-cCCh
Q 046194 638 ARHGHGDKALTLFSQMKLDGPLPD-HVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGR-AGEL 714 (934)
Q Consensus 638 ~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~-~g~~ 714 (934)
...|++++|+..|+++.+. .|+ ...|..+..++...|++++|+..|+++.+ +.|+ ...|+.+..+|.+ .|..
T Consensus 177 ~~~g~~~eAl~~~~kal~l--dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~---l~P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK---EDVRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCSC
T ss_pred HHccCHHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCcc
Confidence 9999999999999999994 565 67788888999999999999999999987 3455 7889999999999 6676
Q ss_pred HHH-----HHHHHhC-CCCC-CHHHHHHHHHHHHhccCC--CcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCC-----
Q 046194 715 DKI-----EEFINKM-PITP-NSLIWRTVLGACCRANCR--KTELGRKAANMLFEMEPQNAVNYVLLANMYASGG----- 780 (934)
Q Consensus 715 ~~A-----~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~--~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g----- 780 (934)
++| ++.+++. .+.| +...|..+...+... | +.+.+...++++ +.+|+++..+..|+++|.+.|
T Consensus 252 ~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~--g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~ 328 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDR--GLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCD 328 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTT--CGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCS
T ss_pred hHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHcc--CccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhccccc
Confidence 888 4777766 5566 477899999988887 6 789999999998 999999999999999999975
Q ss_pred ----ChHHHHHHHHHH-HhCCCcCCCceeEEEeCCEEEEEEcCCCCCCChHHHHHHHHHHHHHH
Q 046194 781 ----KWEDVAKARKAM-KEAEVKKEAGCSWVTMKDGVHVFVAGDESHPEKDLIYEKLKELNQKM 839 (934)
Q Consensus 781 ----~~~~a~~~~~~m-~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m 839 (934)
..++|.++++.+ .+ .+|.....|..+......+
T Consensus 329 ~~~~~~~~A~~~~~~l~~~--------------------------~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 329 NKEDILNKALELCEILAKE--------------------------KDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHT--------------------------TCGGGHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHH--------------------------hCchhHHHHHHHHHHHHHH
Confidence 258899998887 42 4566677777766665554
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.29 E-value=2.2e-10 Score=128.48 Aligned_cols=343 Identities=10% Similarity=0.028 Sum_probs=161.7
Q ss_pred cCchHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhcCCh---HHHHHHHhhCCCCCccchHHHHHHHHhCC-----ccHH
Q 046194 370 LGWIMLGQQIHGEGLKLGLDSDVSVSNALLSLYADAGYL---SRCLKVFFLMPEHDQVSWNSVIGAFADSE-----ALVS 441 (934)
Q Consensus 370 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~---~~A~~~f~~~~~~~~~~~~~li~~~~~~g-----~~~~ 441 (934)
.|++++|.+++..+.+.| +...+..|..+|...|+. ++|...|++..+.+...+..+...+...+ +. +
T Consensus 16 ~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~~~-~ 91 (452)
T 3e4b_A 16 RGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEAEH-H 91 (452)
T ss_dssp HHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--CCHHHH-H
T ss_pred CCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCcCH-H
Confidence 344444444444444443 222333444555556666 77888877776666666666666555554 55 7
Q ss_pred HHHHHHHHHHHcCCCCCcccHHHHHHHHhccCCchHH---HHHHHHHHHhcCCCchhHHHHHHHHHHhcCC----HHHHH
Q 046194 442 EAVKYYLDMRRAGWSPNGVTFINILAAASSFSMGKLG---HQVHAQVIKYNVANETTIENALLSCYGKCGE----MDDCE 514 (934)
Q Consensus 442 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a---~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~----~~~A~ 514 (934)
+|+..|++..+.|... .+..+-..+...+..+.+ .+.+....+.| +......|...|...+. .+.+.
T Consensus 92 ~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a~ 165 (452)
T 3e4b_A 92 EAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDVE 165 (452)
T ss_dssp HHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHHH
T ss_pred HHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHHH
Confidence 8888888888765322 444555555444443332 23333333333 23444555666666653 34444
Q ss_pred HHHHhhccCCCcchHHHHHHHHHhcC---ChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhchhhHHHHHHHHHHHHHhC
Q 046194 515 KIFARMSERRDEVSWNSMISGYIHNE---LLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVATLERGMEVHACGVRAC 591 (934)
Q Consensus 515 ~~~~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~ 591 (934)
.++...... +...+..|...|...| +.++|++.|++....| .++...+..+-..|...
T Consensus 166 ~~~~~a~~~-~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g----------------- 226 (452)
T 3e4b_A 166 RICKAALNT-TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDA----------------- 226 (452)
T ss_dssp HHHHHHTTT-CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCG-----------------
T ss_pred HHHHHHHcC-CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCC-----------------
Confidence 445444443 4446666666666666 6666776666666654 22222222222223222
Q ss_pred CCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCCCCcccccHHHHH-H--HHcCChHHHHHHHHHHHHCCCCCChhhHHHH
Q 046194 592 LEFDVVIGSALVDMYSKCGRIDYASRFFDLMPVRNVYSWNSMISG-Y--ARHGHGDKALTLFSQMKLDGPLPDHVTFVGV 668 (934)
Q Consensus 592 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 668 (934)
....++.++|...|+.....+...+..|... | ...|++++|+..|++..+.| +...+..|
T Consensus 227 --------------~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~L 289 (452)
T 3e4b_A 227 --------------TLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLL 289 (452)
T ss_dssp --------------GGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred --------------CCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHH
Confidence 0001445555555554442233344444444 2 24566677777777766655 34444445
Q ss_pred HHHHHhhC-----cHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhh----cCChHHHHHHHHhCCCCCCHHHHHHHHHH
Q 046194 669 LSACSHAG-----LVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGR----AGELDKIEEFINKMPITPNSLIWRTVLGA 739 (934)
Q Consensus 669 l~a~~~~g-----~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~----~g~~~~A~~~~~~m~~~p~~~~~~~ll~~ 739 (934)
...|. .| ++++|.++|+... .-+...+..|..+|.. ..++++|.+++++.-...+......|...
T Consensus 290 g~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~ 363 (452)
T 3e4b_A 290 GKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQL 363 (452)
T ss_dssp HHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHH
T ss_pred HHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHH
Confidence 44444 44 6777777766654 2335555566666655 23677777777765212222333344444
Q ss_pred HHhcc--CCCcHHHHHHHHHHHhcCCC
Q 046194 740 CCRAN--CRKTELGRKAANMLFEMEPQ 764 (934)
Q Consensus 740 ~~~~~--~~~~~~a~~~~~~~~~~~p~ 764 (934)
|..-. ..|.+.|...++++.+..++
T Consensus 364 y~~G~g~~~d~~~A~~~~~~A~~~g~~ 390 (452)
T 3e4b_A 364 FSQGKGTKPDPLNAYVFSQLAKAQDTP 390 (452)
T ss_dssp HHSCTTBCCCHHHHHHHHHHHHTTCCH
T ss_pred HHhCCCCCCCHHHHHHHHHHHHHCCCH
Confidence 43210 14677777777777766543
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.29 E-value=2.6e-11 Score=123.60 Aligned_cols=215 Identities=9% Similarity=0.026 Sum_probs=137.8
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHH
Q 046194 525 DEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVD 604 (934)
Q Consensus 525 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~ 604 (934)
....|..+...+...|++++|+..|++.... .|+ +...+..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~~~----------------------------------~~~~~~~la~ 65 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEE--NKE----------------------------------DAIPYINFAN 65 (243)
T ss_dssp --------------------CCTTHHHHHTT--CTT----------------------------------CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh--Ccc----------------------------------cHHHHHHHHH
Confidence 4455666666777777777777777777653 221 2334444555
Q ss_pred HHHhcCCHHHHHHHhccCC---CCCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHH
Q 046194 605 MYSKCGRIDYASRFFDLMP---VRNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEG 681 (934)
Q Consensus 605 ~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 681 (934)
.|.+.|++++|.+.|+.+. ..+...|..+...|...|++++|+..|+++.+.. +.+...+..+...+...|++++|
T Consensus 66 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A 144 (243)
T 2q7f_A 66 LLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLA 144 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHH
Confidence 5555556666655555443 1244566677777788888888888888887753 33456677777788888999999
Q ss_pred HHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHH
Q 046194 682 FKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCRANCRKTELGRKAANMLF 759 (934)
Q Consensus 682 ~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~ 759 (934)
..+++++.+. .+.+...+..+...+.+.|++++|.+.++++ ...| +..+|..+...+... |+.+.|...+++++
T Consensus 145 ~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~--~~~~~A~~~~~~~~ 220 (243)
T 2q7f_A 145 LPYLQRAVEL--NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYK--ENREKALEMLDKAI 220 (243)
T ss_dssp HHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--TCTTHHHHHHHHHH
T ss_pred HHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc--cCHHHHHHHHHHHH
Confidence 9988888763 2234677888888999999999999988877 3333 577888888899888 99999999999999
Q ss_pred hcCCCCCchHHHHHHHHHcCC
Q 046194 760 EMEPQNAVNYVLLANMYASGG 780 (934)
Q Consensus 760 ~~~p~~~~~y~~l~~~~~~~g 780 (934)
+++|+++..+..++.+....|
T Consensus 221 ~~~p~~~~~~~~~~~l~~~~~ 241 (243)
T 2q7f_A 221 DIQPDHMLALHAKKLLGHHHH 241 (243)
T ss_dssp HHCTTCHHHHHHHTC------
T ss_pred ccCcchHHHHHHHHHHHhhcc
Confidence 999999888877766554433
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.28 E-value=2.4e-10 Score=118.76 Aligned_cols=229 Identities=10% Similarity=-0.036 Sum_probs=156.5
Q ss_pred cccHHHHHHHHhccCCchHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccCC-Ccc----hHHHHH
Q 046194 459 GVTFINILAAASSFSMGKLGHQVHAQVIKYNVANETTIENALLSCYGKCGEMDDCEKIFARMSERR-DEV----SWNSMI 533 (934)
Q Consensus 459 ~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p-~~~----~~~~li 533 (934)
...+......+...|+++.|...+..+++... .+...+..+...|.+.|++++|...|++....| +.. +|..+.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG 81 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 34455667788899999999999999987653 345577888889999999999999999987753 222 388899
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHH-HHHHhcCCH
Q 046194 534 SGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALV-DMYSKCGRI 612 (934)
Q Consensus 534 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li-~~y~~~g~~ 612 (934)
..|...|++++|++.|++..... +.+...+..+...+...|++++|.+.++.+++.. +.+...+..+. ..|. .+
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~-~~-- 156 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYY-NK-- 156 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHH-TT--
T ss_pred HHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHH-HH--
Confidence 99999999999999999998853 2355788888999999999999999999887752 22444444444 3332 22
Q ss_pred HHHHHHhccCCCCCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhCc---HHHHHHHHHHh
Q 046194 613 DYASRFFDLMPVRNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPD-HVTFVGVLSACSHAGL---VDEGFKHFKSM 688 (934)
Q Consensus 613 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~---~~~a~~~~~~m 688 (934)
++++|+..|+++.+. .|+ ...+..+...+...|+ .++|...|++.
T Consensus 157 -----------------------------~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 205 (272)
T 3u4t_A 157 -----------------------------EYVKADSSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKL 205 (272)
T ss_dssp -----------------------------CHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHH
T ss_pred -----------------------------HHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHH
Confidence 455555555555552 333 3344444445555555 55555555555
Q ss_pred HHhhCCCCCc------ccHHHHHHHHhhcCChHHHHHHHHhC
Q 046194 689 SQVYGLIPQL------EQFSCMVDLLGRAGELDKIEEFINKM 724 (934)
Q Consensus 689 ~~~~~~~p~~------~~y~~li~~l~~~g~~~~A~~~~~~m 724 (934)
.+...-.|+. ..|..+...|.+.|++++|.+.+++.
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 247 (272)
T 3u4t_A 206 IEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNI 247 (272)
T ss_dssp HHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5433222331 35555666666666666666666665
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.27 E-value=4e-10 Score=117.24 Aligned_cols=221 Identities=7% Similarity=-0.066 Sum_probs=110.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhc----hhhHHHHHHHHHHHHHhCCCCcHhHHHHHH
Q 046194 528 SWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACAS----VATLERGMEVHACGVRACLEFDVVIGSALV 603 (934)
Q Consensus 528 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~~~~~~a~~i~~~~~~~~~~~~~~~~~~li 603 (934)
++..+...|...|++++|+..|++.... -+...+..+-..+.. .+++++|...+....+.+ +...+..+.
T Consensus 8 a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 81 (273)
T 1ouv_A 8 ELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLG 81 (273)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 3333444444444444444444444431 112223333333333 344444444444443332 333444444
Q ss_pred HHHHh----cCCHHHHHHHhccCCC-CCcccccHHHHHHHH----cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 046194 604 DMYSK----CGRIDYASRFFDLMPV-RNVYSWNSMISGYAR----HGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSH 674 (934)
Q Consensus 604 ~~y~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 674 (934)
.+|.. .+++++|...|+...+ .+..++..+...|.. .|++++|+..|++..+.+ +...+..+...+..
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~ 158 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDA 158 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHc
Confidence 44554 5555555555554432 233345555555555 666666666666666643 33444455555555
Q ss_pred ----hCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhh----cCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHh---
Q 046194 675 ----AGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGR----AGELDKIEEFINKM-PITPNSLIWRTVLGACCR--- 742 (934)
Q Consensus 675 ----~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~----~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~--- 742 (934)
.+++++|..+|+...+. .+...+..+..+|.+ .|++++|.+.+++. ...| ...+..|...+..
T Consensus 159 ~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~-~~a~~~l~~~~~~g~~ 233 (273)
T 1ouv_A 159 GRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN-GGGCFNLGAMQYNGEG 233 (273)
T ss_dssp TSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHTTSS
T ss_pred CCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC-HHHHHHHHHHHHcCCC
Confidence 66666666666666552 234455556666666 66666666666554 2222 4455555555555
Q ss_pred -ccCCCcHHHHHHHHHHHhcCCC
Q 046194 743 -ANCRKTELGRKAANMLFEMEPQ 764 (934)
Q Consensus 743 -~~~~~~~~a~~~~~~~~~~~p~ 764 (934)
. ++.++|...++++.++.|+
T Consensus 234 ~~--~~~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 234 VT--RNEKQAIENFKKGCKLGAK 254 (273)
T ss_dssp SS--CCSTTHHHHHHHHHHHTCH
T ss_pred cc--cCHHHHHHHHHHHHHcCCH
Confidence 4 6666666666666666654
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.3e-10 Score=116.23 Aligned_cols=203 Identities=13% Similarity=0.013 Sum_probs=99.3
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhhccC-C-CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HhHHHHH
Q 046194 491 ANETTIENALLSCYGKCGEMDDCEKIFARMSER-R-DEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLD-HFTFATV 567 (934)
Q Consensus 491 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~l 567 (934)
+++...+..+...+.+.|++++|...|++.... | +...|..+...+.+.|++++|+..|++.... .|+ ...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHH
Confidence 344555666666666677777777766665543 3 4455666666666666666666666666653 232 2333333
Q ss_pred HHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCC--C-CcccccHHHHHHHHcCChH
Q 046194 568 LSACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPV--R-NVYSWNSMISGYARHGHGD 644 (934)
Q Consensus 568 l~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~ 644 (934)
..++...+. . ... .+...|++++|...|+...+ | +...|..+...|...|+++
T Consensus 80 g~~~~~~~~-------------~--~~~---------~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~ 135 (217)
T 2pl2_A 80 SEAYVALYR-------------Q--AED---------RERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERD 135 (217)
T ss_dssp HHHHHHHHH-------------T--CSS---------HHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHhhh-------------h--hhh---------hcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChH
Confidence 333333300 0 000 00001444444444444331 2 2334555555566666666
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhhcCChHHHHHHHHh
Q 046194 645 KALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGRAGELDKIEEFINK 723 (934)
Q Consensus 645 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~ 723 (934)
+|+..|++..+.. .+...+..+..++...|++++|+..|+...+. .|+ ...+..+..++.+.|++++|.+.+++
T Consensus 136 ~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 136 KAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQ---APKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHTC-------------
T ss_pred HHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 6666666666544 44555555666666666666666666666552 333 45555666666666666666666554
Q ss_pred C
Q 046194 724 M 724 (934)
Q Consensus 724 m 724 (934)
.
T Consensus 211 ~ 211 (217)
T 2pl2_A 211 E 211 (217)
T ss_dssp -
T ss_pred H
Confidence 3
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.26 E-value=2e-10 Score=115.27 Aligned_cols=208 Identities=10% Similarity=-0.029 Sum_probs=139.2
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHH
Q 046194 525 DEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVD 604 (934)
Q Consensus 525 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~ 604 (934)
+...|..+...+...|++++|++.|++..... +.+.. .+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~-----------------------------------~~~~l~~ 50 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNEL-----------------------------------AWLVRAE 50 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH-----------------------------------HHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchH-----------------------------------HHHHHHH
Confidence 44556667777777777777777777766542 12233 3444444
Q ss_pred HHHhcCCHHHHHHHhccCC---CCCcccccHHHHHHHHc-CChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhCcHH
Q 046194 605 MYSKCGRIDYASRFFDLMP---VRNVYSWNSMISGYARH-GHGDKALTLFSQMKLDGPLPD-HVTFVGVLSACSHAGLVD 679 (934)
Q Consensus 605 ~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~ 679 (934)
.|...|++++|.+.|+.+. ..+..+|..+...|... |++++|+..|+++.+.+..|+ ...+..+...+...|+++
T Consensus 51 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 130 (225)
T 2vq2_A 51 IYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFG 130 (225)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHH
Confidence 5555555555555555443 12344566667777777 777778777777776333344 455666777788888888
Q ss_pred HHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhC-CCC--CCHHHHHHHHHHHHhccCCCcHHHHHHHH
Q 046194 680 EGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKM-PIT--PNSLIWRTVLGACCRANCRKTELGRKAAN 756 (934)
Q Consensus 680 ~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~--p~~~~~~~ll~~~~~~~~~~~~~a~~~~~ 756 (934)
+|...|+.+.+. .+.+...+..+..++.+.|++++|.+.++++ ... .+...|..+...+... |+.+.+...++
T Consensus 131 ~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~a~~~~~ 206 (225)
T 2vq2_A 131 LAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKAL--GNAQAAYEYEA 206 (225)
T ss_dssp HHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT--TCHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc--CcHHHHHHHHH
Confidence 888888887763 2223667778888888888888888888876 333 3556666666666666 89999999999
Q ss_pred HHHhcCCCCCchHHHH
Q 046194 757 MLFEMEPQNAVNYVLL 772 (934)
Q Consensus 757 ~~~~~~p~~~~~y~~l 772 (934)
.+.+..|+++.....+
T Consensus 207 ~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 207 QLQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHHCTTCHHHHHHH
T ss_pred HHHHhCCCCHHHHHHh
Confidence 9988999887665544
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.25 E-value=3.2e-11 Score=134.09 Aligned_cols=264 Identities=10% Similarity=0.005 Sum_probs=165.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhccC-CCc-----chHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 046194 498 NALLSCYGKCGEMDDCEKIFARMSER-RDE-----VSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSAC 571 (934)
Q Consensus 498 ~~li~~~~~~g~~~~A~~~~~~~~~~-p~~-----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 571 (934)
..+...+...|++++|...|++.... |+. ..|..+...|...|++++|+..|++.....
T Consensus 52 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------------- 116 (411)
T 4a1s_A 52 ALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLA--------------- 116 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH---------------
Confidence 34445566666666666666665442 221 245555566666666666666666554320
Q ss_pred hchhhHHHHHHHHHHHHHhCC-CCcHhHHHHHHHHHHhcCCHHHHHHHhccCCC-----C----CcccccHHHHHHHHcC
Q 046194 572 ASVATLERGMEVHACGVRACL-EFDVVIGSALVDMYSKCGRIDYASRFFDLMPV-----R----NVYSWNSMISGYARHG 641 (934)
Q Consensus 572 ~~~~~~~~a~~i~~~~~~~~~-~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~g 641 (934)
.+.+. .....++..+...|...|++++|...|++... . ...+|..+...|...|
T Consensus 117 ----------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 180 (411)
T 4a1s_A 117 ----------------KSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKG 180 (411)
T ss_dssp ----------------HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred ----------------HHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcC
Confidence 00000 11233444455555555555555555554331 0 1225556666666666
Q ss_pred C-----------------hHHHHHHHHHHHHC----CCCCC-hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC--
Q 046194 642 H-----------------GDKALTLFSQMKLD----GPLPD-HVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ-- 697 (934)
Q Consensus 642 ~-----------------~~~A~~l~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-- 697 (934)
+ +++|+..+++..+. +-.|. ..++..+...+...|++++|..+|++..+...-.++
T Consensus 181 ~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 260 (411)
T 4a1s_A 181 KHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRA 260 (411)
T ss_dssp HHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred cccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcH
Confidence 6 67777776665441 11122 235666777788888888888888887663211122
Q ss_pred --cccHHHHHHHHhhcCChHHHHHHHHhC-CC---CC----CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCC--
Q 046194 698 --LEQFSCMVDLLGRAGELDKIEEFINKM-PI---TP----NSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQN-- 765 (934)
Q Consensus 698 --~~~y~~li~~l~~~g~~~~A~~~~~~m-~~---~p----~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~-- 765 (934)
...+..+..+|...|++++|.+.+++. .. .+ ...++..+...+... |+.+.|...+++++++.+..
T Consensus 261 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~~~~~~ 338 (411)
T 4a1s_A 261 AERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLL--HEFNTAIEYHNRHLAIAQELGD 338 (411)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHCCC
Confidence 236778888888899999888888766 11 11 145677788888888 99999999999888876543
Q ss_pred ----CchHHHHHHHHHcCCChHHHHHHHHHHHh
Q 046194 766 ----AVNYVLLANMYASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 766 ----~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 794 (934)
...|..++.+|...|++++|.+.++...+
T Consensus 339 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 339 RIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34788999999999999999999887764
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.25 E-value=6.8e-10 Score=115.49 Aligned_cols=223 Identities=9% Similarity=-0.043 Sum_probs=190.6
Q ss_pred CHhHHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHh----cCCHHHHHHHhccCCC-CCcccccHHH
Q 046194 560 DHFTFATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSK----CGRIDYASRFFDLMPV-RNVYSWNSMI 634 (934)
Q Consensus 560 ~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~~~~-~~~~~~~~li 634 (934)
+..++..+-..+...|++++|.+.+..+.+. .+...+..+..+|.. .|++++|...|++..+ .+..++..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4456666777788899999999999999883 356777889999999 9999999999998764 3667888899
Q ss_pred HHHHH----cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----hCcHHHHHHHHHHhHHhhCCCCCcccHHHHHH
Q 046194 635 SGYAR----HGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSH----AGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVD 706 (934)
Q Consensus 635 ~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~ 706 (934)
..|.. .+++++|+..|++..+.+ +...+..+...+.. .+++++|.++|+...+. + +...+..+..
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~ 154 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCTILGS 154 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHH
Confidence 99999 999999999999999865 66778888888888 99999999999999873 3 5667888889
Q ss_pred HHhh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----ccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHc
Q 046194 707 LLGR----AGELDKIEEFINKMPITPNSLIWRTVLGACCR----ANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYAS 778 (934)
Q Consensus 707 ~l~~----~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~ 778 (934)
+|.+ .+++++|.+.+++.--..+...+..+...+.. . ++.++|...++++.+..| +..+..|+.+|..
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~--~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~ 230 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGAT--KNFKEALARYSKACELEN--GGGCFNLGAMQYN 230 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSC--CCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHT
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCC--ccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHc
Confidence 9988 99999999999987222456778888888888 7 999999999999999977 6789999999999
Q ss_pred ----CCChHHHHHHHHHHHhCC
Q 046194 779 ----GGKWEDVAKARKAMKEAE 796 (934)
Q Consensus 779 ----~g~~~~a~~~~~~m~~~~ 796 (934)
.|++++|.+.+++..+.+
T Consensus 231 g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 231 GEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp TSSSSCCSTTHHHHHHHHHHHT
T ss_pred CCCcccCHHHHHHHHHHHHHcC
Confidence 999999999999887654
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.24 E-value=1.7e-10 Score=111.90 Aligned_cols=164 Identities=11% Similarity=0.081 Sum_probs=134.9
Q ss_pred CcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHH
Q 046194 626 NVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPD-HVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCM 704 (934)
Q Consensus 626 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~l 704 (934)
+...|..+...|...|++++|++.|++..+. .|+ ...+..+..++.+.|++++|...+...... .+.+...+..+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ 79 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYIL 79 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHH
Confidence 4456777888888888888888888888874 565 566777888888899999999988888763 22336677778
Q ss_pred HHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCCh
Q 046194 705 VDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKW 782 (934)
Q Consensus 705 i~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~ 782 (934)
...+...+++++|.+.+++. ...| +...|..+...+... |+.++|...++++++++|.++..|..++.+|...|++
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~--g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~ 157 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSM--GEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLR 157 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHh--CCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCH
Confidence 88888899999999888876 3444 467788888888888 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhC
Q 046194 783 EDVAKARKAMKEA 795 (934)
Q Consensus 783 ~~a~~~~~~m~~~ 795 (934)
++|.+.+++..+.
T Consensus 158 ~~A~~~~~~al~~ 170 (184)
T 3vtx_A 158 DEAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC
Confidence 9999998887653
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.24 E-value=2.4e-11 Score=137.16 Aligned_cols=205 Identities=8% Similarity=-0.031 Sum_probs=170.5
Q ss_pred HHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCH-HHHHHHhccCCC--C-CcccccHHHHHHHHcCChHHHHHHHHH
Q 046194 577 LERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRI-DYASRFFDLMPV--R-NVYSWNSMISGYARHGHGDKALTLFSQ 652 (934)
Q Consensus 577 ~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~-~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~ 652 (934)
++.+.+.+....+. .+.+...+..+...|...|++ ++|.+.|++..+ | +...|..+...|...|++++|++.|++
T Consensus 84 ~~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34444444443332 223667777788888888888 888888887652 3 456888999999999999999999999
Q ss_pred HHHCCCCCChhhHHHHHHHHHhh---------CcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhhc--------CCh
Q 046194 653 MKLDGPLPDHVTFVGVLSACSHA---------GLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGRA--------GEL 714 (934)
Q Consensus 653 m~~~g~~p~~~t~~~ll~a~~~~---------g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~--------g~~ 714 (934)
..+ +.|+...+..+...+... |++++|++.|++..+. .|+ ...|..+..+|... |++
T Consensus 163 al~--~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 163 ALT--HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM---DVLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHT--TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHh--hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 998 468877888888889898 9999999999999873 455 77889999999998 999
Q ss_pred HHHHHHHHhC-CCCC----CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHH
Q 046194 715 DKIEEFINKM-PITP----NSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKAR 789 (934)
Q Consensus 715 ~~A~~~~~~m-~~~p----~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~ 789 (934)
++|.+.+++. ...| +...|..+...+... |++++|...++++++++|+++..+..++.++...|++++|.+.+
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~--g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYE--ESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999987 4556 688899999999999 99999999999999999999999999999999999999998754
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.23 E-value=1.1e-10 Score=121.59 Aligned_cols=216 Identities=11% Similarity=-0.047 Sum_probs=177.5
Q ss_pred hchhhHHHHHHHHHHHHHhCCC---CcHhHHHHHHHHHHhcCCHHHHHHHhccCCC---CCcccccHHHHHHHHcCChHH
Q 046194 572 ASVATLERGMEVHACGVRACLE---FDVVIGSALVDMYSKCGRIDYASRFFDLMPV---RNVYSWNSMISGYARHGHGDK 645 (934)
Q Consensus 572 ~~~~~~~~a~~i~~~~~~~~~~---~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~ 645 (934)
...+++++|...++.+++.... .+..++..+...|...|++++|...|+.+.. .+..+|..+...|...|++++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHH
Confidence 4568999999999999886321 2577888999999999999999999998763 356789999999999999999
Q ss_pred HHHHHHHHHHCCCCC-ChhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhC
Q 046194 646 ALTLFSQMKLDGPLP-DHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKM 724 (934)
Q Consensus 646 A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m 724 (934)
|+..|+++.+. .| +...+..+...+...|++++|..+|+.+.+ +.|+..........+.+.|++++|.+.+++.
T Consensus 96 A~~~~~~al~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 170 (275)
T 1xnf_A 96 AYEAFDSVLEL--DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ---DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQH 170 (275)
T ss_dssp HHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHhc--CccccHHHHHHHHHHHHhccHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 99999999985 45 467788888999999999999999999987 3566555555666667889999999999766
Q ss_pred --CCCCCHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCC----CCchHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 046194 725 --PITPNSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQ----NAVNYVLLANMYASGGKWEDVAKARKAMKEA 795 (934)
Q Consensus 725 --~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~----~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~ 795 (934)
..+++...|. ++..+... ++.+.|...++++++..|. ++..+..++.+|...|++++|.+.++...+.
T Consensus 171 ~~~~~~~~~~~~-~~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 171 FEKSDKEQWGWN-IVEFYLGN--ISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp HHHSCCCSTHHH-HHHHHTTS--SCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HhcCCcchHHHH-HHHHHHHh--cCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 2334444444 66666666 7889999999999888774 3688999999999999999999999988754
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.23 E-value=1.5e-10 Score=124.26 Aligned_cols=264 Identities=11% Similarity=0.037 Sum_probs=167.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhccC-CC-----cchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHh
Q 046194 499 ALLSCYGKCGEMDDCEKIFARMSER-RD-----EVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACA 572 (934)
Q Consensus 499 ~li~~~~~~g~~~~A~~~~~~~~~~-p~-----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 572 (934)
.....+...|++++|...|++.... |+ ...|..+...|...|++++|+..|++.....
T Consensus 10 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---------------- 73 (338)
T 3ro2_A 10 LEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA---------------- 73 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH----------------
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh----------------
Confidence 3445566666666666666665442 22 2345556666666666666666666554310
Q ss_pred chhhHHHHHHHHHHHHHhCCCC-cHhHHHHHHHHHHhcCCHHHHHHHhccCCC-----CC----cccccHHHHHHHHcCC
Q 046194 573 SVATLERGMEVHACGVRACLEF-DVVIGSALVDMYSKCGRIDYASRFFDLMPV-----RN----VYSWNSMISGYARHGH 642 (934)
Q Consensus 573 ~~~~~~~a~~i~~~~~~~~~~~-~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~ 642 (934)
.+.+..+ ...++..+...|...|++++|...|++... ++ ..+|..+...|...|+
T Consensus 74 ---------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 138 (338)
T 3ro2_A 74 ---------------RTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK 138 (338)
T ss_dssp ---------------HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------------hcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCc
Confidence 0001111 233444555555666666666655554431 11 1255566666666666
Q ss_pred --------------------hHHHHHHHHHHHHC----CCCCC-hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC
Q 046194 643 --------------------GDKALTLFSQMKLD----GPLPD-HVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ 697 (934)
Q Consensus 643 --------------------~~~A~~l~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~ 697 (934)
+++|+..+++..+. +-.|. ..++..+...+...|++++|...++...+...-.++
T Consensus 139 ~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 218 (338)
T 3ro2_A 139 SFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD 218 (338)
T ss_dssp TSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred ccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC
Confidence 77777777665432 11121 235666677788888888888888887653211122
Q ss_pred ----cccHHHHHHHHhhcCChHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCC
Q 046194 698 ----LEQFSCMVDLLGRAGELDKIEEFINKM----PITPN----SLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQN 765 (934)
Q Consensus 698 ----~~~y~~li~~l~~~g~~~~A~~~~~~m----~~~p~----~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~ 765 (934)
...+..+...+.+.|++++|.+.+++. +..++ ..++..+...+... |+.+.|...+++++++.|..
T Consensus 219 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~--g~~~~A~~~~~~a~~~~~~~ 296 (338)
T 3ro2_A 219 KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLL--QDYEKAIDYHLKHLAIAQEL 296 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHhc
Confidence 336778888888999999998888775 11122 45677777888888 99999999999988876543
Q ss_pred ------CchHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 046194 766 ------AVNYVLLANMYASGGKWEDVAKARKAMKEA 795 (934)
Q Consensus 766 ------~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~ 795 (934)
...+..++.+|...|++++|.+.+++..+.
T Consensus 297 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 297 KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 347889999999999999999998887653
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.22 E-value=9.2e-11 Score=129.89 Aligned_cols=269 Identities=10% Similarity=0.025 Sum_probs=164.6
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhhccC-CC-----cchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHH
Q 046194 493 ETTIENALLSCYGKCGEMDDCEKIFARMSER-RD-----EVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFAT 566 (934)
Q Consensus 493 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-p~-----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 566 (934)
....+..+...+.+.|++++|...|++.... |+ ...|..+...|...|++++|+..|++.....
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---------- 77 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA---------- 77 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH----------
Confidence 3344455566666677777777777665542 22 2345566666666677777776666654320
Q ss_pred HHHHHhchhhHHHHHHHHHHHHHhCCCC-cHhHHHHHHHHHHhcCCHHHHHHHhccCCC-----CC----cccccHHHHH
Q 046194 567 VLSACASVATLERGMEVHACGVRACLEF-DVVIGSALVDMYSKCGRIDYASRFFDLMPV-----RN----VYSWNSMISG 636 (934)
Q Consensus 567 ll~a~~~~~~~~~a~~i~~~~~~~~~~~-~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~ 636 (934)
.+.+..| ...++..+...|...|++++|...|+.... ++ ..+|..+...
T Consensus 78 ---------------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~ 136 (406)
T 3sf4_A 78 ---------------------RTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNV 136 (406)
T ss_dssp ---------------------HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ---------------------HhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHH
Confidence 0001111 123344445555555555555555544331 11 2255556666
Q ss_pred HHHcCC--------------------hHHHHHHHHHHHHC----CCCCC-hhhHHHHHHHHHhhCcHHHHHHHHHHhHHh
Q 046194 637 YARHGH--------------------GDKALTLFSQMKLD----GPLPD-HVTFVGVLSACSHAGLVDEGFKHFKSMSQV 691 (934)
Q Consensus 637 ~~~~g~--------------------~~~A~~l~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 691 (934)
|...|+ +++|+..+++..+. +-.|. ..++..+...+...|++++|...|++..+.
T Consensus 137 ~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 216 (406)
T 3sf4_A 137 YHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLI 216 (406)
T ss_dssp HHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHH
T ss_pred HHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 666666 66777666665431 11122 235666667778888888888888877653
Q ss_pred hCCCCC----cccHHHHHHHHhhcCChHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhccCCCcHHHHHHHHHHH
Q 046194 692 YGLIPQ----LEQFSCMVDLLGRAGELDKIEEFINKM----PITPN----SLIWRTVLGACCRANCRKTELGRKAANMLF 759 (934)
Q Consensus 692 ~~~~p~----~~~y~~li~~l~~~g~~~~A~~~~~~m----~~~p~----~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~ 759 (934)
..-.++ ...|..+...|...|++++|.+.+++. +..++ ..++..+...+... |+++.|...+++++
T Consensus 217 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~--g~~~~A~~~~~~a~ 294 (406)
T 3sf4_A 217 AKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLL--QDYEKAIDYHLKHL 294 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHh--CcHHHHHHHHHHHH
Confidence 222222 336777888888888888888888765 11112 44677777777777 88888888888888
Q ss_pred hcCCCC------CchHHHHHHHHHcCCChHHHHHHHHHHHh
Q 046194 760 EMEPQN------AVNYVLLANMYASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 760 ~~~p~~------~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 794 (934)
++.+.. +..+..++.+|...|++++|.+.+++..+
T Consensus 295 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 295 AIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 775543 45788889999999999999888877654
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.22 E-value=5.1e-11 Score=131.98 Aligned_cols=298 Identities=8% Similarity=-0.017 Sum_probs=195.6
Q ss_pred CCcccHHHHHHHHhccCCchHHHHHHHHHHHhcCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHhhccC----C----C
Q 046194 457 PNGVTFINILAAASSFSMGKLGHQVHAQVIKYNVANE---TTIENALLSCYGKCGEMDDCEKIFARMSER----R----D 525 (934)
Q Consensus 457 p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----p----~ 525 (934)
+....+......+...|+++.|...+..+++...... ..++..+...|...|++++|...|++.... + .
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 3344455666778899999999999999988754322 357788899999999999999999876431 1 2
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCC----HhHHHHHHHHHhchhh--------------------HHHH
Q 046194 526 EVSWNSMISGYIHNELLPKAMNLVWFMMQRGQ-RLD----HFTFATVLSACASVAT--------------------LERG 580 (934)
Q Consensus 526 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~~ll~a~~~~~~--------------------~~~a 580 (934)
..+|..+...|...|++++|+..|.+...... .++ ..++..+...+...|+ ++.|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 44677888889999999999999998765311 011 2355555556666666 5555
Q ss_pred HHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCCC--CcccccHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 046194 581 MEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPVR--NVYSWNSMISGYARHGHGDKALTLFSQMKLDGP 658 (934)
Q Consensus 581 ~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 658 (934)
...+....+. +.....+ ...+|..+...|...|++++|+..|++..+...
T Consensus 167 ~~~~~~al~~----------------------------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 218 (406)
T 3sf4_A 167 VDFYEENLSL----------------------------VTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK 218 (406)
T ss_dssp HHHHHHHHHH----------------------------HHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH----------------------------HHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 5555544331 1111100 112455556666666666666666666554210
Q ss_pred -CCC----hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC----cccHHHHHHHHhhcCChHHHHHHHHhC----C
Q 046194 659 -LPD----HVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ----LEQFSCMVDLLGRAGELDKIEEFINKM----P 725 (934)
Q Consensus 659 -~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~y~~li~~l~~~g~~~~A~~~~~~m----~ 725 (934)
.++ ..++..+...+...|++++|..+++...+...-.++ ...+..+...|.+.|++++|.+.+++. +
T Consensus 219 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 298 (406)
T 3sf4_A 219 EFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 298 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 111 225666666777788888888877776553211112 456677788888888888888877765 1
Q ss_pred CCCC----HHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCC------CCchHHHHHHHHHcCCChHH
Q 046194 726 ITPN----SLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQ------NAVNYVLLANMYASGGKWED 784 (934)
Q Consensus 726 ~~p~----~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~------~~~~y~~l~~~~~~~g~~~~ 784 (934)
..++ ..++..+...+... |+.+.|...+++++++.+. ....+..++.+|...|+...
T Consensus 299 ~~~~~~~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 299 ELNDRIGEGRACWSLGNAYTAL--GNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred hcCCcHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 1122 44677777788888 8999999999888877432 34567788888888886643
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.19 E-value=2.3e-08 Score=115.86 Aligned_cols=217 Identities=11% Similarity=0.041 Sum_probs=157.7
Q ss_pred HHHHHHHHHHHcCCCCCHhHHHHHHHHHhchhhHHHHH-HHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccC
Q 046194 544 KAMNLVWFMMQRGQRLDHFTFATVLSACASVATLERGM-EVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLM 622 (934)
Q Consensus 544 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~-~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~ 622 (934)
.+..+|++.+.. ..-+...|.....-+...|+.+.|. ++++.++.. .+.+...+-.++...-+.|+++.|.++|+.+
T Consensus 327 Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~ 404 (679)
T 4e6h_A 327 RMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSC 404 (679)
T ss_dssp HHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 345566666654 2335556666666666677777785 888888764 3446666777888888888888888888876
Q ss_pred CC-------------CC------------cccccHHHHHHHHcCChHHHHHHHHHHHHC-CCCCChhhHHHHHHHHHh-h
Q 046194 623 PV-------------RN------------VYSWNSMISGYARHGHGDKALTLFSQMKLD-GPLPDHVTFVGVLSACSH-A 675 (934)
Q Consensus 623 ~~-------------~~------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~t~~~ll~a~~~-~ 675 (934)
.. |+ ...|...+....+.|..+.|..+|.+..+. + .+....|......-.+ .
T Consensus 405 l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~ 483 (679)
T 4e6h_A 405 IDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHIS 483 (679)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTT
T ss_pred HHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhC
Confidence 53 21 236888888888889999999999999885 2 1122333322222223 3
Q ss_pred CcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhC-CCCC----CHHHHHHHHHHHHhccCCCcHH
Q 046194 676 GLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKM-PITP----NSLIWRTVLGACCRANCRKTEL 750 (934)
Q Consensus 676 g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p----~~~~~~~ll~~~~~~~~~~~~~ 750 (934)
++.+.|.++|+...+.+. -+...+...++.+...|+.+.|..+|++. ...| ....|...+..-..+ |+.+.
T Consensus 484 ~d~e~Ar~ife~~Lk~~p--~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~--G~~~~ 559 (679)
T 4e6h_A 484 KDTKTACKVLELGLKYFA--TDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKV--GSLNS 559 (679)
T ss_dssp SCCHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHT--CCSHH
T ss_pred CCHHHHHHHHHHHHHHCC--CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHc--CCHHH
Confidence 558999999999998643 23556678888889999999999999987 3333 356899999998899 99999
Q ss_pred HHHHHHHHHhcCCCCCc
Q 046194 751 GRKAANMLFEMEPQNAV 767 (934)
Q Consensus 751 a~~~~~~~~~~~p~~~~ 767 (934)
+..+.+++.+..|+++.
T Consensus 560 ~~~v~~R~~~~~P~~~~ 576 (679)
T 4e6h_A 560 VRTLEKRFFEKFPEVNK 576 (679)
T ss_dssp HHHHHHHHHHHSTTCCH
T ss_pred HHHHHHHHHHhCCCCcH
Confidence 99999999999998754
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=1.4e-10 Score=136.00 Aligned_cols=161 Identities=15% Similarity=0.223 Sum_probs=138.3
Q ss_pred cccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHH
Q 046194 627 VYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPD-HVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCM 704 (934)
Q Consensus 627 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~l 704 (934)
..+|+.|...|.+.|++++|++.|++..+ +.|+ ...+..+..++.+.|++++|++.|++..+ +.|+ ...|..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~--l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~---l~P~~~~a~~nL 83 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR---ISPTFADAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHH
Confidence 34677788888888888888888888888 4666 56788888889999999999999998876 4566 7788889
Q ss_pred HHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCCh
Q 046194 705 VDLLGRAGELDKIEEFINKM-PITPN-SLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKW 782 (934)
Q Consensus 705 i~~l~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~ 782 (934)
..+|.+.|++++|++.+++. .+.|+ ...|..|...+... |++++|+..++++++++|+++..|..|+.+|...|+|
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~--g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDS--GNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccH
Confidence 99999999999999999887 55664 67899999999999 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh
Q 046194 783 EDVAKARKAMKE 794 (934)
Q Consensus 783 ~~a~~~~~~m~~ 794 (934)
++|.+.+++..+
T Consensus 162 ~~A~~~~~kal~ 173 (723)
T 4gyw_A 162 TDYDERMKKLVS 173 (723)
T ss_dssp TTHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999988776653
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.15 E-value=3.6e-09 Score=112.09 Aligned_cols=186 Identities=12% Similarity=0.094 Sum_probs=139.1
Q ss_pred HHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCC--CC-cc-cccHHHHHHHHcCChHHHHHHHHHH
Q 046194 578 ERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPV--RN-VY-SWNSMISGYARHGHGDKALTLFSQM 653 (934)
Q Consensus 578 ~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~-~~-~~~~li~~~~~~g~~~~A~~l~~~m 653 (934)
++|..+++.+++.-.+.+...+..++..+.+.|++++|.++|++... |+ .. .|..++..+.+.|++++|..+|++.
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 160 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 160 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 66777777766631223556777888888888888888888887653 32 33 7888888888899999999999999
Q ss_pred HHCCCCCChhhHHHHHHHHH-hhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhC-C---CCC
Q 046194 654 KLDGPLPDHVTFVGVLSACS-HAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKM-P---ITP 728 (934)
Q Consensus 654 ~~~g~~p~~~t~~~ll~a~~-~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m-~---~~p 728 (934)
.+.. +++...|........ ..|+.++|..+|+...+.. +-+...|..+++.+.+.|++++|..+|++. . +.|
T Consensus 161 ~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p 237 (308)
T 2ond_A 161 REDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 237 (308)
T ss_dssp HTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred HhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCH
Confidence 8853 223344443332222 3699999999999988742 223778888899999999999999999887 2 355
Q ss_pred --CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCch
Q 046194 729 --NSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVN 768 (934)
Q Consensus 729 --~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 768 (934)
....|..++.....+ |+.+.+..+++++.+..|+++..
T Consensus 238 ~~~~~l~~~~~~~~~~~--g~~~~a~~~~~~a~~~~p~~~~~ 277 (308)
T 2ond_A 238 EKSGEIWARFLAFESNI--GDLASILKVEKRRFTAFREEYEG 277 (308)
T ss_dssp GGCHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHTTTTTSS
T ss_pred HHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHccccccc
Confidence 467899989888888 99999999999999999987543
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.14 E-value=2.6e-10 Score=126.60 Aligned_cols=275 Identities=11% Similarity=0.035 Sum_probs=179.5
Q ss_pred ccHHHHHHHHhccCCchHHHHHHHHHHHhcCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHhhccC-------C-Ccch
Q 046194 460 VTFINILAAASSFSMGKLGHQVHAQVIKYNVANE---TTIENALLSCYGKCGEMDDCEKIFARMSER-------R-DEVS 528 (934)
Q Consensus 460 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------p-~~~~ 528 (934)
..+..+...+...|+++.|...+..+++...... ..++..+...|...|++++|...|++.... | ....
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 3444556678889999999999999988754322 147888899999999999999999876542 1 3456
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHc----CCCC-CHhHHHHHHHHHhchhh-----------------HHHHHHHHHH
Q 046194 529 WNSMISGYIHNELLPKAMNLVWFMMQR----GQRL-DHFTFATVLSACASVAT-----------------LERGMEVHAC 586 (934)
Q Consensus 529 ~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~t~~~ll~a~~~~~~-----------------~~~a~~i~~~ 586 (934)
|..+...|...|++++|+..|++.... +-.| ...++..+...+...|+ ++.|.+.+..
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 208 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 788888999999999999999987653 1112 12355555566666666 5555555554
Q ss_pred HHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCCC--CcccccHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC--
Q 046194 587 GVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPVR--NVYSWNSMISGYARHGHGDKALTLFSQMKLDGP-LPD-- 661 (934)
Q Consensus 587 ~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~-- 661 (934)
..+. +.....+ ...+|..+...|...|++++|+..|++..+... .++
T Consensus 209 al~~----------------------------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 260 (411)
T 4a1s_A 209 NLKL----------------------------MRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRA 260 (411)
T ss_dssp HHHH----------------------------HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHH----------------------------HHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcH
Confidence 4331 0000000 112444555556666666666666666554210 011
Q ss_pred --hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC----cccHHHHHHHHhhcCChHHHHHHHHhC-CC---CCC--
Q 046194 662 --HVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ----LEQFSCMVDLLGRAGELDKIEEFINKM-PI---TPN-- 729 (934)
Q Consensus 662 --~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~y~~li~~l~~~g~~~~A~~~~~~m-~~---~p~-- 729 (934)
..++..+...+...|++++|...|++..+...-..+ ...+..+..+|.+.|++++|.+.+++. .. .++
T Consensus 261 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 340 (411)
T 4a1s_A 261 AERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRI 340 (411)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChH
Confidence 125666666777778888888777776553211111 456677778888888888888887765 11 111
Q ss_pred --HHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCC
Q 046194 730 --SLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQ 764 (934)
Q Consensus 730 --~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~ 764 (934)
..++..+...+... |+.+.|...+++++++.+.
T Consensus 341 ~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 341 GEARACWSLGNAHSAI--GGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHhh
Confidence 34667777788888 9999999999998888764
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.12 E-value=1.3e-07 Score=109.66 Aligned_cols=228 Identities=12% Similarity=0.050 Sum_probs=150.8
Q ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHH-HHHHhhccC-C-CcchHHHHHHHHHhcCChhHHHHHHHHHHH
Q 046194 478 GHQVHAQVIKYNVANETTIENALLSCYGKCGEMDDCE-KIFARMSER-R-DEVSWNSMISGYIHNELLPKAMNLVWFMMQ 554 (934)
Q Consensus 478 a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~~~~~-p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 554 (934)
...+++..+.. ++....+|-..+..+.+.|+.++|. ++|++.... | +...|-..+...-+.|++++|.++|+++..
T Consensus 328 v~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~ 406 (679)
T 4e6h_A 328 MTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCID 406 (679)
T ss_dssp HHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 44556665554 3345666666677777777777775 777766543 4 444566677777777888888888877765
Q ss_pred cC---------CCCC------------HhHHHHHHHHHhchhhHHHHHHHHHHHHHh-C-CCCcHhHHHHHHHHHHhcC-
Q 046194 555 RG---------QRLD------------HFTFATVLSACASVATLERGMEVHACGVRA-C-LEFDVVIGSALVDMYSKCG- 610 (934)
Q Consensus 555 ~g---------~~p~------------~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~-~-~~~~~~~~~~li~~y~~~g- 610 (934)
.. -.|+ ...|...+....+.|.++.|+++++.+++. + ..+...+..+. +-.+++
T Consensus 407 ~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~--lE~~~~~ 484 (679)
T 4e6h_A 407 RIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAY--IEYHISK 484 (679)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHH--HHHTTTS
T ss_pred HHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHH--HHHHhCC
Confidence 31 0132 235677777777788888899998888775 2 22334433333 334444
Q ss_pred CHHHHHHHhccCCC---CCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHhhCcHHHHHHHH
Q 046194 611 RIDYASRFFDLMPV---RNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPD--HVTFVGVLSACSHAGLVDEGFKHF 685 (934)
Q Consensus 611 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~ 685 (934)
+.+.|.++|+...+ .+...|...+......|+.+.|..+|++.......|+ ...|...+.--...|+.+.+.++.
T Consensus 485 d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~ 564 (679)
T 4e6h_A 485 DTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLE 564 (679)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 48888888887763 3455677777777788899999999998887532222 345666666667789999999999
Q ss_pred HHhHHhhCCCCCcccHHHHHHHHhhc
Q 046194 686 KSMSQVYGLIPQLEQFSCMVDLLGRA 711 (934)
Q Consensus 686 ~~m~~~~~~~p~~~~y~~li~~l~~~ 711 (934)
+++.+. .|+......+++-|.-.
T Consensus 565 ~R~~~~---~P~~~~~~~f~~ry~~~ 587 (679)
T 4e6h_A 565 KRFFEK---FPEVNKLEEFTNKYKVL 587 (679)
T ss_dssp HHHHHH---STTCCHHHHHHHHTCBT
T ss_pred HHHHHh---CCCCcHHHHHHHHhcCC
Confidence 998874 36655556666666533
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.12 E-value=4.2e-10 Score=120.63 Aligned_cols=270 Identities=7% Similarity=-0.027 Sum_probs=169.8
Q ss_pred HHHHHHHHhccCCchHHHHHHHHHHHhcCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHhhccC----C----CcchHH
Q 046194 462 FINILAAASSFSMGKLGHQVHAQVIKYNVANE---TTIENALLSCYGKCGEMDDCEKIFARMSER----R----DEVSWN 530 (934)
Q Consensus 462 ~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----p----~~~~~~ 530 (934)
+......+...|+++.|...+..+++...... ..++..+...|...|++++|.+.+++.... + ....|.
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 87 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASG 87 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHH
Confidence 33445667889999999999999988753322 367788899999999999999999876542 1 245678
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCC-CCC----HhHHHHHHHHHhchhh--------------------HHHHHHHHH
Q 046194 531 SMISGYIHNELLPKAMNLVWFMMQRGQ-RLD----HFTFATVLSACASVAT--------------------LERGMEVHA 585 (934)
Q Consensus 531 ~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~~ll~a~~~~~~--------------------~~~a~~i~~ 585 (934)
.+...|...|++++|+..|.+...... .++ ..++..+...+...|+ ++.|.+.+.
T Consensus 88 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~ 167 (338)
T 3ro2_A 88 NLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYE 167 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHH
Confidence 888899999999999999998765311 112 2355566666667777 666666665
Q ss_pred HHHHh----CCCC-cHhHHHHHHHHHHhcCCHHHHHHHhccCCCCCcccccHHHHHHHHcCChHHHHHHHHHHHHCCC-C
Q 046194 586 CGVRA----CLEF-DVVIGSALVDMYSKCGRIDYASRFFDLMPVRNVYSWNSMISGYARHGHGDKALTLFSQMKLDGP-L 659 (934)
Q Consensus 586 ~~~~~----~~~~-~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~ 659 (934)
...+. +..+ ... +|..+...|...|++++|+..+++..+... .
T Consensus 168 ~a~~~~~~~~~~~~~~~-------------------------------~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 216 (338)
T 3ro2_A 168 ENLSLVTALGDRAAQGR-------------------------------AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF 216 (338)
T ss_dssp HHHHHHHHHTCHHHHHH-------------------------------HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHH-------------------------------HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc
Confidence 54331 1011 122 344445555555555555555555543200 0
Q ss_pred CC----hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC----cccHHHHHHHHhhcCChHHHHHHHHhC-C---CC
Q 046194 660 PD----HVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ----LEQFSCMVDLLGRAGELDKIEEFINKM-P---IT 727 (934)
Q Consensus 660 p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~y~~li~~l~~~g~~~~A~~~~~~m-~---~~ 727 (934)
++ ..++..+...+...|++++|..+++...+...-.++ ...+..+...|...|++++|.+.+++. . ..
T Consensus 217 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 296 (338)
T 3ro2_A 217 GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL 296 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc
Confidence 11 124555566666777777777777666542111111 445666777777777777777777665 1 11
Q ss_pred CC----HHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCC
Q 046194 728 PN----SLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQ 764 (934)
Q Consensus 728 p~----~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~ 764 (934)
++ ..++..+...+... |+.+.|...+++++++.++
T Consensus 297 ~~~~~~~~~~~~la~~~~~~--g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 297 KDRIGEGRACWSLGNAYTAL--GNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHC---
T ss_pred CCcHHHHHHHHHHHHHHHHc--CChHHHHHHHHHHHHHHHh
Confidence 11 33566777777777 8888888888888877654
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.09 E-value=7.2e-10 Score=121.80 Aligned_cols=221 Identities=7% Similarity=0.014 Sum_probs=135.1
Q ss_pred HhchhhHHHHHHHHHHHHHh----CCCC-cHhHHHHHHHHHHhcCCHHHHHHHhccCCC-----CC-----cccccHHHH
Q 046194 571 CASVATLERGMEVHACGVRA----CLEF-DVVIGSALVDMYSKCGRIDYASRFFDLMPV-----RN-----VYSWNSMIS 635 (934)
Q Consensus 571 ~~~~~~~~~a~~i~~~~~~~----~~~~-~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~-----~~~~~~li~ 635 (934)
+...|++++|...+..+.+. +-.+ ...++..+...|...|++++|...+++... ++ ..+++.+..
T Consensus 113 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~ 192 (383)
T 3ulq_A 113 ELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFAT 192 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 34455556666555555442 1111 234556666666677777666666655431 11 235666777
Q ss_pred HHHHcCChHHHHHHHHHHHHCCC-CCC----hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhh---CCCCC-cccHHHHHH
Q 046194 636 GYARHGHGDKALTLFSQMKLDGP-LPD----HVTFVGVLSACSHAGLVDEGFKHFKSMSQVY---GLIPQ-LEQFSCMVD 706 (934)
Q Consensus 636 ~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~p~-~~~y~~li~ 706 (934)
.|...|++++|+..|++..+... .++ ..++..+...+...|++++|.+.|++..+.. +..|. ..++..+..
T Consensus 193 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 272 (383)
T 3ulq_A 193 NFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQ 272 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHH
Confidence 77777777777777777664210 111 1356667777788888888888887776521 22133 556777788
Q ss_pred HHhhcCChHHHHHHHHhC-CC-----CCC-HHHHHHHHHHHHhccCCC---cHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 046194 707 LLGRAGELDKIEEFINKM-PI-----TPN-SLIWRTVLGACCRANCRK---TELGRKAANMLFEMEPQNAVNYVLLANMY 776 (934)
Q Consensus 707 ~l~~~g~~~~A~~~~~~m-~~-----~p~-~~~~~~ll~~~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~y~~l~~~~ 776 (934)
+|.+.|++++|.+.+++. .+ .|. ...+..+...+... |+ .+.|...+++. ...|.....+..++.+|
T Consensus 273 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y 349 (383)
T 3ulq_A 273 IHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSG--PDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYY 349 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSS--CCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHH
Confidence 888888888888887765 11 222 22244555555555 66 55555555554 23344455778889999
Q ss_pred HcCCChHHHHHHHHHHHh
Q 046194 777 ASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 777 ~~~g~~~~a~~~~~~m~~ 794 (934)
...|++++|.+.+++..+
T Consensus 350 ~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 350 HERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHH
Confidence 999999999888887654
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.09 E-value=2.7e-10 Score=120.88 Aligned_cols=240 Identities=10% Similarity=-0.005 Sum_probs=108.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHc-------CCCCCHhHHHHHHHHHhchhhHHHHHHHHHHHHHh------CC-C
Q 046194 528 SWNSMISGYIHNELLPKAMNLVWFMMQR-------GQRLDHFTFATVLSACASVATLERGMEVHACGVRA------CL-E 593 (934)
Q Consensus 528 ~~~~li~~~~~~g~~~~A~~l~~~m~~~-------g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~------~~-~ 593 (934)
+|..+...|...|++++|+.+|+++... ........+..+...+...|++++|...+..+++. +- +
T Consensus 29 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 108 (311)
T 3nf1_A 29 TLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHP 108 (311)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 3444444555555555555555554431 11111233333334444444444444444443332 11 1
Q ss_pred CcHhHHHHHHHHHHhcCCHHHHHHHhccCCC-------C----CcccccHHHHHHHHcCChHHHHHHHHHHHHC------
Q 046194 594 FDVVIGSALVDMYSKCGRIDYASRFFDLMPV-------R----NVYSWNSMISGYARHGHGDKALTLFSQMKLD------ 656 (934)
Q Consensus 594 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------ 656 (934)
....++..+...|...|++++|...|++... + ...+|..+...|...|++++|+..|+++.+.
T Consensus 109 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 188 (311)
T 3nf1_A 109 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLG 188 (311)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC
Confidence 1345556666777777777777776665431 1 1124455555555555666666555555442
Q ss_pred CCCCC-hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhh------CCCCCcccHHHHHHHHhhcCChHHHHHHHHhCCCCCC
Q 046194 657 GPLPD-HVTFVGVLSACSHAGLVDEGFKHFKSMSQVY------GLIPQLEQFSCMVDLLGRAGELDKIEEFINKMPITPN 729 (934)
Q Consensus 657 g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~------~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~~~p~ 729 (934)
+-.|+ ..++..+...+...|++++|..+|+++.+.. ...|........
T Consensus 189 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~------------------------- 243 (311)
T 3nf1_A 189 PDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMH------------------------- 243 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHH-------------------------
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHH-------------------------
Confidence 11222 2234444455555555555555555554310 011111000000
Q ss_pred HHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHHh
Q 046194 730 SLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 730 ~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 794 (934)
...+..+...+... +....+...++.+....|.++..+..++.+|...|++++|.+.+++..+
T Consensus 244 ~~~~~~~~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 244 AEEREECKGKQKDG--TSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp HHHHHHC---------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCchhhH--HHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 11122222222233 4555555666666666777777778888888888888888777776543
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.08 E-value=1.2e-09 Score=105.92 Aligned_cols=165 Identities=16% Similarity=0.062 Sum_probs=137.2
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHhccCCC---CCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHH
Q 046194 595 DVVIGSALVDMYSKCGRIDYASRFFDLMPV---RNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPD-HVTFVGVLS 670 (934)
Q Consensus 595 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~ 670 (934)
++.+|..+...|.+.|++++|.+.|++..+ .+..+|..+...|.+.|++++|+..+++.... .|+ ...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHHH
Confidence 566788888888999999999999887753 35568888899999999999999999998885 444 555666677
Q ss_pred HHHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCC
Q 046194 671 ACSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCRANCRK 747 (934)
Q Consensus 671 a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~ 747 (934)
.+...++++.+...+....+. .|+ ...+..+..+|.+.|++++|++.+++. ...| +..+|..+...+... |+
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~---~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~--g~ 156 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIAL---NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGK--GL 156 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--TC
T ss_pred HHHHcCCHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHC--CC
Confidence 788899999999999988773 344 778888999999999999999999887 4455 577899999999998 99
Q ss_pred cHHHHHHHHHHHhcCCCCC
Q 046194 748 TELGRKAANMLFEMEPQNA 766 (934)
Q Consensus 748 ~~~a~~~~~~~~~~~p~~~ 766 (934)
.++|...++++++++|+++
T Consensus 157 ~~~A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 157 RDEAVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHhCCccCH
Confidence 9999999999999999764
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.07 E-value=2.5e-09 Score=117.47 Aligned_cols=229 Identities=8% Similarity=-0.003 Sum_probs=158.7
Q ss_pred HHHHhcCChhHHHHHHHHHHHc----CCCC-CHhHHHHHHHHHhchhhHHHHHHHHHHHHHh--CC---CC-cHhHHHHH
Q 046194 534 SGYIHNELLPKAMNLVWFMMQR----GQRL-DHFTFATVLSACASVATLERGMEVHACGVRA--CL---EF-DVVIGSAL 602 (934)
Q Consensus 534 ~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~--~~---~~-~~~~~~~l 602 (934)
..+...|++++|+..|++.... +-.+ ...++..+...+...|+++.|...+..+.+. .. .+ ...+++.+
T Consensus 111 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 190 (383)
T 3ulq_A 111 MYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLF 190 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence 3445566666666666665542 1111 1244555555666666666666666655542 11 11 24566777
Q ss_pred HHHHHhcCCHHHHHHHhccCCC-----CCc----ccccHHHHHHHHcCChHHHHHHHHHHHHC----CCCCC-hhhHHHH
Q 046194 603 VDMYSKCGRIDYASRFFDLMPV-----RNV----YSWNSMISGYARHGHGDKALTLFSQMKLD----GPLPD-HVTFVGV 668 (934)
Q Consensus 603 i~~y~~~g~~~~A~~~~~~~~~-----~~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~t~~~l 668 (934)
...|...|++++|...|++... ++. .+|..+...|...|++++|+..|++..+. +..|+ ..++..+
T Consensus 191 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 270 (383)
T 3ulq_A 191 ATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLI 270 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHH
Confidence 7888888888888888876642 121 37788888999999999999999988762 22244 5568888
Q ss_pred HHHHHhhCcHHHHHHHHHHhHHhhCCCCC---cccHHHHHHHHhhcCC---hHHHHHHHHhCCCCCCH-HHHHHHHHHHH
Q 046194 669 LSACSHAGLVDEGFKHFKSMSQVYGLIPQ---LEQFSCMVDLLGRAGE---LDKIEEFINKMPITPNS-LIWRTVLGACC 741 (934)
Q Consensus 669 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~y~~li~~l~~~g~---~~~A~~~~~~m~~~p~~-~~~~~ll~~~~ 741 (934)
...+...|++++|...+++..+...-.++ ...+..+...+...|+ +++|++++++.+..|+. ..+..|...+.
T Consensus 271 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~ 350 (383)
T 3ulq_A 271 TQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYH 350 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 88899999999999999988763211122 3346778889999999 99999999998665553 35677777888
Q ss_pred hccCCCcHHHHHHHHHHHhcCCC
Q 046194 742 RANCRKTELGRKAANMLFEMEPQ 764 (934)
Q Consensus 742 ~~~~~~~~~a~~~~~~~~~~~p~ 764 (934)
.. |+.+.|...+++++++...
T Consensus 351 ~~--g~~~~A~~~~~~al~~~~~ 371 (383)
T 3ulq_A 351 ER--KNFQKASAYFLKVEQVRQL 371 (383)
T ss_dssp HT--TCHHHHHHHHHHHHHHHTS
T ss_pred HC--CCHHHHHHHHHHHHHHHHH
Confidence 88 9999999999998877543
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.06 E-value=1.8e-09 Score=104.26 Aligned_cols=127 Identities=13% Similarity=0.032 Sum_probs=76.3
Q ss_pred hHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHH
Q 046194 664 TFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKM-P-ITPNSLIWRTVLGACC 741 (934)
Q Consensus 664 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m-~-~~p~~~~~~~ll~~~~ 741 (934)
.+..+...+...|++++|..+++.+.+. .+.+...+..+...+...|++++|.+.++++ . .+.+...|..+...+.
T Consensus 44 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 121 (186)
T 3as5_A 44 VALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALD 121 (186)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHH
Confidence 3444444444445555555555444432 1112344444555555555555555555544 1 1234556666666776
Q ss_pred hccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHHh
Q 046194 742 RANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 742 ~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 794 (934)
.. |+.+.|...++++++..|.++..+..++.+|...|++++|.+.++...+
T Consensus 122 ~~--~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 122 NL--GRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANE 172 (186)
T ss_dssp HT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred Hc--CcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66 7777777777777777777777788888888888888888777776654
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.04 E-value=2.1e-09 Score=108.26 Aligned_cols=186 Identities=9% Similarity=-0.030 Sum_probs=103.7
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHhccCCC----CCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHH
Q 046194 595 DVVIGSALVDMYSKCGRIDYASRFFDLMPV----RNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPD-HVTFVGVL 669 (934)
Q Consensus 595 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll 669 (934)
|+..+..+...|.+.|++++|...|+.... ++...|..+..+|...|++++|+..|++..+ ..|+ ...+..+.
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~ 83 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK--KNYNLANAYIGKS 83 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH--hCcchHHHHHHHH
Confidence 445555566666666666666666665432 4444555566666666666666666666665 3444 34455555
Q ss_pred HHHHhhCcHHHHHHHHHHhHHhhCCCCC-c-------ccHHHHHHHHhhcCChHHHHHHHHhC-CCCCC---HHHHHHHH
Q 046194 670 SACSHAGLVDEGFKHFKSMSQVYGLIPQ-L-------EQFSCMVDLLGRAGELDKIEEFINKM-PITPN---SLIWRTVL 737 (934)
Q Consensus 670 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~-------~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p~---~~~~~~ll 737 (934)
..+...|++++|...|+...+. .|+ . ..|..+...+.+.|++++|.+.+++. ...|+ ...|..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKA---VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHH
Confidence 5666666666666666666552 233 2 33555556666666666666666655 44554 23444444
Q ss_pred HHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHHh
Q 046194 738 GACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 738 ~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 794 (934)
..+... +....+++..+.+.++..|..+ .....|.+++|...+++..+
T Consensus 161 ~~~~~~-------~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~ 208 (228)
T 4i17_A 161 VLFYNN-------GADVLRKATPLASSNKEKYASE--KAKADAAFKKAVDYLGEAVT 208 (228)
T ss_dssp HHHHHH-------HHHHHHHHGGGTTTCHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-------HHHHHHHHHhcccCCHHHHHHH--HHHHHHHHHHHHHHHHHHhh
Confidence 444332 3344455555555554443322 23334455888888777764
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.02 E-value=3.7e-09 Score=106.46 Aligned_cols=205 Identities=9% Similarity=0.061 Sum_probs=160.4
Q ss_pred CCHhHHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCC--C-CcccccHHHH
Q 046194 559 LDHFTFATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPV--R-NVYSWNSMIS 635 (934)
Q Consensus 559 p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~ 635 (934)
.|...+...-..+...|++++|...+..+++...+++...+..+...|.+.|++++|.+.|+.... | +...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 355777788888999999999999999999977546777777799999999999999999998763 3 4458889999
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCh--------hhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC---cccHHHH
Q 046194 636 GYARHGHGDKALTLFSQMKLDGPLPDH--------VTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ---LEQFSCM 704 (934)
Q Consensus 636 ~~~~~g~~~~A~~l~~~m~~~g~~p~~--------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~y~~l 704 (934)
.|...|++++|+..|++..+. .|+. ..|..+...+...|++++|++.|+...+ +.|+ ...|..+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l 159 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSL 159 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHH
Confidence 999999999999999999984 5653 3466777788899999999999999976 4565 5677888
Q ss_pred HHHHhhcCCh--HHHHHHHHhCCCCCCHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 046194 705 VDLLGRAGEL--DKIEEFINKMPITPNSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYA 777 (934)
Q Consensus 705 i~~l~~~g~~--~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~ 777 (934)
..+|...|+. ++|..+ ...+...+..+.. ... +.++.|...++++++++|+++.....+..+..
T Consensus 160 ~~~~~~~~~~~~~~a~~~-----~~~~~~~~~~~~~--~~~--~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~ 225 (228)
T 4i17_A 160 GVLFYNNGADVLRKATPL-----ASSNKEKYASEKA--KAD--AAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKA 225 (228)
T ss_dssp HHHHHHHHHHHHHHHGGG-----TTTCHHHHHHHHH--HHH--HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhc-----ccCCHHHHHHHHH--HHH--HHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 8888766643 333222 1223444444433 334 78899999999999999999888887777643
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=98.99 E-value=1.4e-08 Score=107.50 Aligned_cols=210 Identities=9% Similarity=-0.005 Sum_probs=160.0
Q ss_pred HHHHHHHHHHHhCCCCcHhHHHHHHHHHH-------hcCCH-------HHHHHHhccCCC---C-CcccccHHHHHHHHc
Q 046194 579 RGMEVHACGVRACLEFDVVIGSALVDMYS-------KCGRI-------DYASRFFDLMPV---R-NVYSWNSMISGYARH 640 (934)
Q Consensus 579 ~a~~i~~~~~~~~~~~~~~~~~~li~~y~-------~~g~~-------~~A~~~~~~~~~---~-~~~~~~~li~~~~~~ 640 (934)
+|..+++.+++.. +.++..+..++..+. +.|++ ++|..+|++... | +...|..++..+.+.
T Consensus 34 ~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 34 RVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 4444444444431 224455555555544 45775 899999997653 3 445899999999999
Q ss_pred CChHHHHHHHHHHHHCCCCCChh--hHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHh-hcCChHHH
Q 046194 641 GHGDKALTLFSQMKLDGPLPDHV--TFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLG-RAGELDKI 717 (934)
Q Consensus 641 g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~-~~g~~~~A 717 (934)
|++++|..+|+++.+ +.|+.. .|..+...+.+.|++++|..+|++..+. .+++...|...+.... ..|+.++|
T Consensus 113 ~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 113 MKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp TCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred CCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999998 567643 7888888899999999999999999872 2233445544443322 36999999
Q ss_pred HHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhc---CCC-CCchHHHHHHHHHcCCChHHHHHHHHH
Q 046194 718 EEFINKM-PITP-NSLIWRTVLGACCRANCRKTELGRKAANMLFEM---EPQ-NAVNYVLLANMYASGGKWEDVAKARKA 791 (934)
Q Consensus 718 ~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~---~p~-~~~~y~~l~~~~~~~g~~~~a~~~~~~ 791 (934)
.++|++. ...| +...|..++..+... |+.+.|...++++++. .|+ ....|..+++.+.+.|+.++|..+++.
T Consensus 189 ~~~~~~al~~~p~~~~~~~~~~~~~~~~--g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 189 FKIFELGLKKYGDIPEYVLAYIDYLSHL--NEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHC--CCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999987 3334 578899999999888 9999999999999996 453 566888999999999999999999888
Q ss_pred HHhC
Q 046194 792 MKEA 795 (934)
Q Consensus 792 m~~~ 795 (934)
+.+.
T Consensus 267 a~~~ 270 (308)
T 2ond_A 267 RFTA 270 (308)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8754
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=98.99 E-value=9e-08 Score=104.47 Aligned_cols=194 Identities=11% Similarity=0.004 Sum_probs=117.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHhccCCC-------C---C-cccccHHHHHHHHcCChHHHHHHHHHHHHCCCC--C-C-hh
Q 046194 599 GSALVDMYSKCGRIDYASRFFDLMPV-------R---N-VYSWNSMISGYARHGHGDKALTLFSQMKLDGPL--P-D-HV 663 (934)
Q Consensus 599 ~~~li~~y~~~g~~~~A~~~~~~~~~-------~---~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--p-~-~~ 663 (934)
...+...|...|++++|...+++... + . ...+..+...|...|++++|...+++..+.... | . ..
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 34455556666666666666554431 1 1 124445566667777777777777776653211 1 1 23
Q ss_pred hHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHH-----HHHHHHhhcCChHHHHHHHHhC-CCCCC-----HHH
Q 046194 664 TFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFS-----CMVDLLGRAGELDKIEEFINKM-PITPN-----SLI 732 (934)
Q Consensus 664 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~-----~li~~l~~~g~~~~A~~~~~~m-~~~p~-----~~~ 732 (934)
++..+...+...|++++|...++.......-......+. ..+..+...|++++|.+.+++. ...|. ...
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 255 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence 455566667777888888888777765321111111121 2234466788888888888776 22221 234
Q ss_pred HHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCC------CchHHHHHHHHHcCCChHHHHHHHHHHHh
Q 046194 733 WRTVLGACCRANCRKTELGRKAANMLFEMEPQN------AVNYVLLANMYASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 733 ~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 794 (934)
+..+...+... |+.+.|...++.+.+..+.. ...+..++.+|...|+.++|.+.++...+
T Consensus 256 ~~~la~~~~~~--g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 256 WRNIARAQILL--GEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHc--CCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 56666677777 88888888888776664332 13667788888899999999888776653
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=98.99 E-value=1.1e-08 Score=98.77 Aligned_cols=169 Identities=12% Similarity=0.023 Sum_probs=142.2
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHhccCCC---CCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 046194 596 VVIGSALVDMYSKCGRIDYASRFFDLMPV---RNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSAC 672 (934)
Q Consensus 596 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 672 (934)
...+..+...|...|++++|...|+.+.. .+...|..+...|...|++++|+..++++.+.. +.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 44566778889999999999999998874 355678889999999999999999999998853 33466788888889
Q ss_pred HhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCcHH
Q 046194 673 SHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCRANCRKTEL 750 (934)
Q Consensus 673 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~~ 750 (934)
...|++++|.++|+.+.+. .+.+...+..+..++.+.|++++|.+.++++ ...| +..+|..+...+... |+.+.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~--~~~~~ 162 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQM--GRHEE 162 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--TCHHH
T ss_pred HHhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHc--CCHHH
Confidence 9999999999999999874 3345778889999999999999999999987 3333 577888899999988 99999
Q ss_pred HHHHHHHHHhcCCCCCchH
Q 046194 751 GRKAANMLFEMEPQNAVNY 769 (934)
Q Consensus 751 a~~~~~~~~~~~p~~~~~y 769 (934)
|...+++++++.|+++..+
T Consensus 163 A~~~~~~~~~~~~~~~~~~ 181 (186)
T 3as5_A 163 ALPHFKKANELDEGASVEL 181 (186)
T ss_dssp HHHHHHHHHHHHHCCCGGG
T ss_pred HHHHHHHHHHcCCCchhhH
Confidence 9999999999999876543
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.97 E-value=8.8e-09 Score=112.79 Aligned_cols=220 Identities=10% Similarity=-0.007 Sum_probs=142.9
Q ss_pred HhchhhHHHHHHHHHHHHHhC--CC--C-cHhHHHHHHHHHHhcCCHHHHHHHhccCCC-----CC-----cccccHHHH
Q 046194 571 CASVATLERGMEVHACGVRAC--LE--F-DVVIGSALVDMYSKCGRIDYASRFFDLMPV-----RN-----VYSWNSMIS 635 (934)
Q Consensus 571 ~~~~~~~~~a~~i~~~~~~~~--~~--~-~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~-----~~~~~~li~ 635 (934)
+...|++++|...+..+.+.. .. + ...++..+...|...|+++.|...+++... ++ ..+++.+..
T Consensus 111 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~ 190 (378)
T 3q15_A 111 EFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAG 190 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHH
Confidence 445667777777777665431 11 1 245566677777788887777776665431 11 236677778
Q ss_pred HHHHcCChHHHHHHHHHHHHC----CCCCC-hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhh---CCCCCcccHHHHHHH
Q 046194 636 GYARHGHGDKALTLFSQMKLD----GPLPD-HVTFVGVLSACSHAGLVDEGFKHFKSMSQVY---GLIPQLEQFSCMVDL 707 (934)
Q Consensus 636 ~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~p~~~~y~~li~~ 707 (934)
.|...|++++|++.|++..+. +-.+. ..++..+...+...|++++|...|++..+.. +.+.....+..+..+
T Consensus 191 ~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 270 (378)
T 3q15_A 191 NYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWT 270 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHH
Confidence 888888888888888877652 11111 2456677778888889999988888876521 122225677788888
Q ss_pred HhhcCChHHHHHHHHhC----CC--CCCH-HHHHHHHHHHHhccCCC---cHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 046194 708 LGRAGELDKIEEFINKM----PI--TPNS-LIWRTVLGACCRANCRK---TELGRKAANMLFEMEPQNAVNYVLLANMYA 777 (934)
Q Consensus 708 l~~~g~~~~A~~~~~~m----~~--~p~~-~~~~~ll~~~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~ 777 (934)
|.+.|++++|.+.+++. +. .|.. ..+..+...+... ++ .+.|...+++. ...|.....+..++.+|.
T Consensus 271 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~--~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~ 347 (378)
T 3q15_A 271 LCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKET--VDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFE 347 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSS--CCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHH
Confidence 88899999998888775 11 2332 3344444444444 66 55555555541 222344556788999999
Q ss_pred cCCChHHHHHHHHHHH
Q 046194 778 SGGKWEDVAKARKAMK 793 (934)
Q Consensus 778 ~~g~~~~a~~~~~~m~ 793 (934)
..|++++|.+.+++..
T Consensus 348 ~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 348 SSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHH
Confidence 9999999998877664
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.95 E-value=3.2e-09 Score=112.45 Aligned_cols=240 Identities=10% Similarity=0.017 Sum_probs=152.8
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhhcc--------C-C-CcchHHHHHHHHHhcCChhHHHHHHHHHHHc------CC
Q 046194 494 TTIENALLSCYGKCGEMDDCEKIFARMSE--------R-R-DEVSWNSMISGYIHNELLPKAMNLVWFMMQR------GQ 557 (934)
Q Consensus 494 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~-p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~ 557 (934)
..++..+...|...|++++|...|++... . | ....|..+...|...|++++|+..|++.... +-
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 34556677777777787777777776654 1 1 3345667777788888888888888777653 22
Q ss_pred CC-CHhHHHHHHHHHhchhhHHHHHHHHHHHHHh------CCCC-cHhHHHHHHHHHHhcCCHHHHHHHhccCCC-----
Q 046194 558 RL-DHFTFATVLSACASVATLERGMEVHACGVRA------CLEF-DVVIGSALVDMYSKCGRIDYASRFFDLMPV----- 624 (934)
Q Consensus 558 ~p-~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~------~~~~-~~~~~~~li~~y~~~g~~~~A~~~~~~~~~----- 624 (934)
.| ...++..+...+...|++++|...+..+.+. +..| ....+..+...|...|++++|.+.|+....
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 186 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 186 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 23 3456667777788888888888888877664 2223 456778899999999999999999987642
Q ss_pred --C----CcccccHHHHHHHHcCChHHHHHHHHHHHHCC-------CCCChhhHHHHHHHHHhhCcHHHHHHHHHHhHHh
Q 046194 625 --R----NVYSWNSMISGYARHGHGDKALTLFSQMKLDG-------PLPDHVTFVGVLSACSHAGLVDEGFKHFKSMSQV 691 (934)
Q Consensus 625 --~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-------~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 691 (934)
+ ...+|..+...|...|++++|+..|+++.+.. ..|..........
T Consensus 187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~--------------------- 245 (311)
T 3nf1_A 187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAE--------------------- 245 (311)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHH---------------------
T ss_pred hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHH---------------------
Confidence 1 23378889999999999999999999998741 1122111111111
Q ss_pred hCCCCCcccHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCC
Q 046194 692 YGLIPQLEQFSCMVDLLGRAGELDKIEEFINKMP-ITP-NSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQ 764 (934)
Q Consensus 692 ~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~ 764 (934)
.+..+...+...+.+.+|...++... ..| +..+|..+...+... |+.++|...+++++++.|+
T Consensus 246 --------~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 246 --------EREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQ--GKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp --------HHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHC-
T ss_pred --------HHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHhhc
Confidence 11222333444555666666666552 233 345677777788887 8888888888888887764
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.94 E-value=7.5e-09 Score=116.73 Aligned_cols=206 Identities=12% Similarity=0.018 Sum_probs=105.5
Q ss_pred HHHHHHHHhhccC-C-CcchHHHHHHHHHhcCCh-hHHHHHHHHHHHcCCCCCHhHHHHHHHHHhchhhHHHHHHHHHHH
Q 046194 511 DDCEKIFARMSER-R-DEVSWNSMISGYIHNELL-PKAMNLVWFMMQRGQRLDHFTFATVLSACASVATLERGMEVHACG 587 (934)
Q Consensus 511 ~~A~~~~~~~~~~-p-~~~~~~~li~~~~~~g~~-~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~ 587 (934)
+++...+++.... | +...|..+...|...|++ ++|++.|++..... +-+...+..+..++...|++++|.+.++.+
T Consensus 85 ~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 163 (474)
T 4abn_A 85 EKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSGA 163 (474)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444444443332 2 344455555555556666 66666666555431 112344444445555555555555555555
Q ss_pred HHhCCCCcHhHHHHHHHHHHhc---------CCHHHHHHHhccCCC---CCcccccHHHHHHHHc--------CChHHHH
Q 046194 588 VRACLEFDVVIGSALVDMYSKC---------GRIDYASRFFDLMPV---RNVYSWNSMISGYARH--------GHGDKAL 647 (934)
Q Consensus 588 ~~~~~~~~~~~~~~li~~y~~~---------g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~--------g~~~~A~ 647 (934)
++.. |+...+..+...|... |++++|.+.|++..+ .+...|..+..+|... |++++|+
T Consensus 164 l~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~ 241 (474)
T 4abn_A 164 LTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQAL 241 (474)
T ss_dssp HTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHH
Confidence 4432 3334444455555554 444444444444331 2233455555555555 5566666
Q ss_pred HHHHHHHHCCCCC----ChhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhhcCChHHHHHHHH
Q 046194 648 TLFSQMKLDGPLP----DHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGRAGELDKIEEFIN 722 (934)
Q Consensus 648 ~l~~~m~~~g~~p----~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~ 722 (934)
..|++..+. .| +...+..+..++...|++++|.+.|++..+ +.|+ ...+..+..++...|++++|.+.+.
T Consensus 242 ~~~~~al~~--~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 242 SAYAQAEKV--DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAA---LDPAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHH--CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHh--CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 666666653 34 345555566666666666666666666654 2233 4455556666666666666665544
Q ss_pred hC
Q 046194 723 KM 724 (934)
Q Consensus 723 ~m 724 (934)
++
T Consensus 317 ~~ 318 (474)
T 4abn_A 317 KT 318 (474)
T ss_dssp TC
T ss_pred cc
Confidence 43
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.86 E-value=2.3e-08 Score=104.93 Aligned_cols=161 Identities=9% Similarity=-0.029 Sum_probs=98.5
Q ss_pred cccHHHHHHHHcCChHHHHHHHHHHHHCCC---CCC--hhhHHHHHHHHHhh-CcHHHHHHHHHHhHHhhCCCCC----c
Q 046194 629 SWNSMISGYARHGHGDKALTLFSQMKLDGP---LPD--HVTFVGVLSACSHA-GLVDEGFKHFKSMSQVYGLIPQ----L 698 (934)
Q Consensus 629 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---~p~--~~t~~~ll~a~~~~-g~~~~a~~~~~~m~~~~~~~p~----~ 698 (934)
+|+.+...|...|++++|+..|++..+... .+. ..++..+...|... |++++|+..|++..+.+.-..+ .
T Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~ 158 (292)
T 1qqe_A 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN 158 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHH
Confidence 445555555556666666666655544210 111 23566677777775 8888888888887663211111 3
Q ss_pred ccHHHHHHHHhhcCChHHHHHHHHhC-CCCCC---H-----HHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCch-
Q 046194 699 EQFSCMVDLLGRAGELDKIEEFINKM-PITPN---S-----LIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVN- 768 (934)
Q Consensus 699 ~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p~---~-----~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~- 768 (934)
.+|..+...|.+.|++++|.+.+++. ...|+ . ..|..+...+... |+.+.|...++++++++|..+..
T Consensus 159 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~--g~~~~A~~~~~~al~l~p~~~~~~ 236 (292)
T 1qqe_A 159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAA--TDAVAAARTLQEGQSEDPNFADSR 236 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHT--TCHHHHHHHHHGGGCC--------
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhhCCCCCCcH
Confidence 45777888888888888888888876 22222 1 1456666667777 89999999999999998876553
Q ss_pred ----HHHHHHHHH--cCCChHHHHHHHHH
Q 046194 769 ----YVLLANMYA--SGGKWEDVAKARKA 791 (934)
Q Consensus 769 ----y~~l~~~~~--~~g~~~~a~~~~~~ 791 (934)
+..++..|. ..+++++|.+.++.
T Consensus 237 ~~~~l~~l~~~~~~~~~~~~~~A~~~~~~ 265 (292)
T 1qqe_A 237 ESNFLKSLIDAVNEGDSEQLSEHCKEFDN 265 (292)
T ss_dssp -HHHHHHHHHHHHTTCTTTHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhcc
Confidence 334555554 45678888776543
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=8.5e-09 Score=120.97 Aligned_cols=163 Identities=10% Similarity=0.092 Sum_probs=135.5
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHhccCCC--C-CcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHH
Q 046194 595 DVVIGSALVDMYSKCGRIDYASRFFDLMPV--R-NVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPD-HVTFVGVLS 670 (934)
Q Consensus 595 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~ 670 (934)
+...++.|...|.+.|++++|.+.|++..+ | +..+|+.+...|.+.|++++|++.|++..+ +.|+ ...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 467788888888888888888888887653 3 456888889999999999999999999888 4676 567888888
Q ss_pred HHHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhccCCC
Q 046194 671 ACSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGRAGELDKIEEFINKM-PITPN-SLIWRTVLGACCRANCRK 747 (934)
Q Consensus 671 a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~ 747 (934)
++...|++++|++.|++..+ +.|+ ...|..+..+|.+.|++++|++.+++. .+.|+ ...|..|...+... |+
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~---l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~--g~ 160 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQ---INPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIV--CD 160 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT--TC
T ss_pred HHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhc--cc
Confidence 89999999999999998876 4566 778889999999999999999999887 56664 66888888888888 99
Q ss_pred cHHHHHHHHHHHhcCCC
Q 046194 748 TELGRKAANMLFEMEPQ 764 (934)
Q Consensus 748 ~~~a~~~~~~~~~~~p~ 764 (934)
++.|...+++++++.|+
T Consensus 161 ~~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 161 WTDYDERMKKLVSIVAD 177 (723)
T ss_dssp CTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhChh
Confidence 99999999988877543
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.85 E-value=2e-07 Score=101.85 Aligned_cols=225 Identities=11% Similarity=0.022 Sum_probs=159.3
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCC-CCC----HhHHHHHHHHHhchhhHHHHHHHHHHHHHhC--C---CC-cHhHHHHH
Q 046194 534 SGYIHNELLPKAMNLVWFMMQRGQ-RLD----HFTFATVLSACASVATLERGMEVHACGVRAC--L---EF-DVVIGSAL 602 (934)
Q Consensus 534 ~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~--~---~~-~~~~~~~l 602 (934)
..+...|++++|+..|++....-. .++ ..++..+...+...|+++.|...+..+.+.. . .+ ...+++.+
T Consensus 109 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 188 (378)
T 3q15_A 109 MYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVI 188 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHH
Confidence 345567777777777777655311 122 2455566666777777777777777665421 1 11 24566778
Q ss_pred HHHHHhcCCHHHHHHHhccCCC-----CC----cccccHHHHHHHHcCChHHHHHHHHHHHH-----CCCCCChhhHHHH
Q 046194 603 VDMYSKCGRIDYASRFFDLMPV-----RN----VYSWNSMISGYARHGHGDKALTLFSQMKL-----DGPLPDHVTFVGV 668 (934)
Q Consensus 603 i~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~t~~~l 668 (934)
...|...|++++|.+.|++... ++ ..+++.+...|...|++++|+..|++..+ .. +....++..+
T Consensus 189 g~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~l 267 (378)
T 3q15_A 189 AGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFGL 267 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHHH
Confidence 8888888888888888876542 12 23677888889999999999999998876 32 2225667778
Q ss_pred HHHHHhhCcHHHHHHHHHHhHHhhCCCCC---cccHHHHHHHHhhcCC---hHHHHHHHHhCCCCCCH-HHHHHHHHHHH
Q 046194 669 LSACSHAGLVDEGFKHFKSMSQVYGLIPQ---LEQFSCMVDLLGRAGE---LDKIEEFINKMPITPNS-LIWRTVLGACC 741 (934)
Q Consensus 669 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~y~~li~~l~~~g~---~~~A~~~~~~m~~~p~~-~~~~~ll~~~~ 741 (934)
...+.+.|++++|..++++..+...-.++ ...+..+...+...|+ +++|++.+++.+..|+. ..+..+...+.
T Consensus 268 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~ 347 (378)
T 3q15_A 268 SWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFE 347 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHH
Confidence 88899999999999999998874322222 3456667777888888 99999999987655543 35566777777
Q ss_pred hccCCCcHHHHHHHHHHHhc
Q 046194 742 RANCRKTELGRKAANMLFEM 761 (934)
Q Consensus 742 ~~~~~~~~~a~~~~~~~~~~ 761 (934)
.. |+.+.|...++++++.
T Consensus 348 ~~--g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 348 SS--CHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HT--TCHHHHHHHHHHHHHH
T ss_pred HC--CCHHHHHHHHHHHHHH
Confidence 78 9999999999888765
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=3.3e-09 Score=98.68 Aligned_cols=139 Identities=11% Similarity=0.034 Sum_probs=107.0
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhhcCC
Q 046194 636 GYARHGHGDKALTLFSQMKLDGPLPD-HVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGRAGE 713 (934)
Q Consensus 636 ~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~ 713 (934)
.+...|++++|++.+++... ..|+ ...+..+...|.+.|++++|++.|++..+ +.|+ ...|..+..+|.+.|+
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~---~~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN---VQERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCc
Confidence 34456677788887777655 2344 44566677778888888888888888876 3454 6778888888888888
Q ss_pred hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCcHHHHH-HHHHHHhcCCCCCchHHHHHHHHHcCCC
Q 046194 714 LDKIEEFINKM-PITP-NSLIWRTVLGACCRANCRKTELGRK-AANMLFEMEPQNAVNYVLLANMYASGGK 781 (934)
Q Consensus 714 ~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~-~~~~~~~~~p~~~~~y~~l~~~~~~~g~ 781 (934)
+++|.+.+++. .+.| +..+|..+...+... |+.+++.. .++++++++|+++..|...+.++...|+
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKN--DVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH--CSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--CChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 88888888876 5566 467888888888888 88876555 5699999999999999999999998885
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.82 E-value=2.7e-08 Score=104.31 Aligned_cols=168 Identities=8% Similarity=-0.064 Sum_probs=102.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHhccCCC-----CC----cccccHHHHHHHHc-CChHHHHHHHHHHHHCCCCCC------
Q 046194 598 IGSALVDMYSKCGRIDYASRFFDLMPV-----RN----VYSWNSMISGYARH-GHGDKALTLFSQMKLDGPLPD------ 661 (934)
Q Consensus 598 ~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~p~------ 661 (934)
+++.+..+|.+.|++++|...|+.... .+ ..+|+.+...|... |++++|+..|++..+. .|+
T Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~--~~~~~~~~~ 156 (292)
T 1qqe_A 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEW--YAQDQSVAL 156 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--HHHTTCHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH--HHhCCChHH
Confidence 444445555555555555554444321 11 23566677777775 8888888888887663 221
Q ss_pred -hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcc-----cHHHHHHHHhhcCChHHHHHHHHhC-CCCCCHH---
Q 046194 662 -HVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLE-----QFSCMVDLLGRAGELDKIEEFINKM-PITPNSL--- 731 (934)
Q Consensus 662 -~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~-----~y~~li~~l~~~g~~~~A~~~~~~m-~~~p~~~--- 731 (934)
..++..+...+...|++++|+..|+...+...-.+... .|..++.++...|++++|...+++. .+.|+..
T Consensus 157 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 236 (292)
T 1qqe_A 157 SNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSR 236 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC--------
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcH
Confidence 23567777788888888888888888876311111111 4667778888888888888888877 4555422
Q ss_pred ---HHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCc
Q 046194 732 ---IWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAV 767 (934)
Q Consensus 732 ---~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 767 (934)
.+..++.++.....++++.|...++++.+++|....
T Consensus 237 ~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~ 275 (292)
T 1qqe_A 237 ESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKIT 275 (292)
T ss_dssp -HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHH
Confidence 344555666532226677777777777777776533
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.81 E-value=8.8e-09 Score=107.18 Aligned_cols=164 Identities=14% Similarity=0.139 Sum_probs=80.6
Q ss_pred cccHHHHHHHHcCChHHHHHHHHHHHHC------CCCCC-hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhh-----CCCC
Q 046194 629 SWNSMISGYARHGHGDKALTLFSQMKLD------GPLPD-HVTFVGVLSACSHAGLVDEGFKHFKSMSQVY-----GLIP 696 (934)
Q Consensus 629 ~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-----~~~p 696 (934)
+|..+...|...|++++|+..|++..+. .-.|+ ..++..+...+...|++++|..+|++..+.. +-.|
T Consensus 87 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 166 (283)
T 3edt_B 87 TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDP 166 (283)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 3444444455555555555555544432 00122 3345555555666666666666666555421 0012
Q ss_pred C-cccHHHHHHHHhhcCChHHHHHHHHhC-C---------CCCC-HHHHHHHHHHHHhccCCC------cHHHHHHHHHH
Q 046194 697 Q-LEQFSCMVDLLGRAGELDKIEEFINKM-P---------ITPN-SLIWRTVLGACCRANCRK------TELGRKAANML 758 (934)
Q Consensus 697 ~-~~~y~~li~~l~~~g~~~~A~~~~~~m-~---------~~p~-~~~~~~ll~~~~~~~~~~------~~~a~~~~~~~ 758 (934)
. ...+..+..+|.+.|++++|.+.++++ . ..|. ...|..+....... +. +..+...++.+
T Consensus 167 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 244 (283)
T 3edt_B 167 NVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESK--DKRRDSAPYGEYGSWYKAC 244 (283)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTT--CCCCC------------CC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcC--CchhHHHHHHHHHHHHHhc
Confidence 1 345555666666666666666666544 0 1121 12232222222222 22 22222222223
Q ss_pred HhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHHh
Q 046194 759 FEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 759 ~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 794 (934)
....|..+..+..++.+|...|++++|.+.+++..+
T Consensus 245 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 245 KVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 333455566788899999999999999988887654
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=98.81 E-value=9.8e-07 Score=96.13 Aligned_cols=194 Identities=8% Similarity=-0.063 Sum_probs=94.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhccC---------C-CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC----CHh
Q 046194 497 ENALLSCYGKCGEMDDCEKIFARMSER---------R-DEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRL----DHF 562 (934)
Q Consensus 497 ~~~li~~~~~~g~~~~A~~~~~~~~~~---------p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p----~~~ 562 (934)
...+...|...|++++|...+++.... | ....+..+...|...|++++|...+++........ ...
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 344555666666666666666654431 1 11234445556666677777777666655432111 123
Q ss_pred HHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCc--HhHH-H---HHHHHHHhcCCHHHHHHHhccCCCCCcc-------c
Q 046194 563 TFATVLSACASVATLERGMEVHACGVRACLEFD--VVIG-S---ALVDMYSKCGRIDYASRFFDLMPVRNVY-------S 629 (934)
Q Consensus 563 t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~--~~~~-~---~li~~y~~~g~~~~A~~~~~~~~~~~~~-------~ 629 (934)
++..+...+...|++++|...++......-.++ .... . ..+..+...|+.++|...++....++.. .
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 255 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence 344445555566666666666665544311111 1111 1 2233355666666666666655432211 2
Q ss_pred ccHHHHHHHHcCChHHHHHHHHHHHHC----CCCCCh-hhHHHHHHHHHhhCcHHHHHHHHHHhHH
Q 046194 630 WNSMISGYARHGHGDKALTLFSQMKLD----GPLPDH-VTFVGVLSACSHAGLVDEGFKHFKSMSQ 690 (934)
Q Consensus 630 ~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 690 (934)
+..+...+...|++++|...+++.... |..++. ..+..+..++...|+.++|...++....
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 334445555666666666666555432 111111 1233334445555555555555555443
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.76 E-value=1.7e-07 Score=96.32 Aligned_cols=202 Identities=10% Similarity=0.017 Sum_probs=126.7
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHhccCCC--CC----cccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCC----hhh
Q 046194 595 DVVIGSALVDMYSKCGRIDYASRFFDLMPV--RN----VYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPD----HVT 664 (934)
Q Consensus 595 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~t 664 (934)
+...+-.+...+.+.|++++|...|+.+.. |+ ...|..+..+|.+.|++++|+..|++..+. .|+ ...
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a 91 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQI--YQIDPRVPQA 91 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH--CCCCchhHHH
Confidence 445555566666677777777777776653 22 235556666677777777777777777663 232 223
Q ss_pred HHHHHHHHHh--------hCcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHH
Q 046194 665 FVGVLSACSH--------AGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGRAGELDKIEEFINKMPITPNSLIWRT 735 (934)
Q Consensus 665 ~~~ll~a~~~--------~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m~~~p~~~~~~~ 735 (934)
+..+..++.. .|++++|+..|+...+.+ |+ ......+.......+.+ ...+..
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~a~~~~~~~~~~~---------------~~~~~~ 153 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY---PNHELVDDATQKIRELRAKL---------------ARKQYE 153 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC---TTCTTHHHHHHHHHHHHHHH---------------HHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC---cCchhHHHHHHHHHHHHHHH---------------HHHHHH
Confidence 4444455555 667777777777666532 33 12221111111100000 112355
Q ss_pred HHHHHHhccCCCcHHHHHHHHHHHhcCCCCC---chHHHHHHHHHcC----------CChHHHHHHHHHHHhCCCcCCCc
Q 046194 736 VLGACCRANCRKTELGRKAANMLFEMEPQNA---VNYVLLANMYASG----------GKWEDVAKARKAMKEAEVKKEAG 802 (934)
Q Consensus 736 ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~y~~l~~~~~~~----------g~~~~a~~~~~~m~~~~~~~~~~ 802 (934)
+...+... |+++.|...++++++..|+++ ..+..++.+|... |++++|.+.++.+.+..
T Consensus 154 la~~~~~~--g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~------ 225 (261)
T 3qky_A 154 AARLYERR--ELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF------ 225 (261)
T ss_dssp HHHHHHHT--TCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHc--cCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC------
Confidence 66777777 999999999999999999854 4788999999977 89999999998887532
Q ss_pred eeEEEeCCEEEEEEcCCCCCCChHHHHHHHHHHHHHHHH
Q 046194 803 CSWVTMKDGVHVFVAGDESHPEKDLIYEKLKELNQKMRD 841 (934)
Q Consensus 803 ~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~~ 841 (934)
+.+|........+.++...+.+
T Consensus 226 -----------------p~~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 226 -----------------PDSPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp -----------------TTCTHHHHHHHHHHHHHHHHHH
T ss_pred -----------------CCChHHHHHHHHHHHHHHHHHH
Confidence 2355556666677777776654
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.68 E-value=6e-07 Score=92.05 Aligned_cols=159 Identities=9% Similarity=0.003 Sum_probs=79.7
Q ss_pred cccHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCC-----CcccHH
Q 046194 629 SWNSMISGYARHGHGDKALTLFSQMKLDGPLPD-HVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIP-----QLEQFS 702 (934)
Q Consensus 629 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-----~~~~y~ 702 (934)
++..+..++...|++++|++++.+.+..|..++ ...+..++..+.+.|+.+.|.+.++.|.+ ..| +..+..
T Consensus 102 ~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~---~~~d~~~~~d~~l~ 178 (310)
T 3mv2_B 102 ELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN---AIEDTVSGDNEMIL 178 (310)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCccccccchHHHH
Confidence 333445555555666666666655544332122 23344444555556666666666665544 233 123333
Q ss_pred HHHHH--HhhcC--ChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhc----------CCCCCc
Q 046194 703 CMVDL--LGRAG--ELDKIEEFINKM-PITPNSLIWRTVLGACCRANCRKTELGRKAANMLFEM----------EPQNAV 767 (934)
Q Consensus 703 ~li~~--l~~~g--~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~----------~p~~~~ 767 (934)
.|..+ ....| +.++|..+|+++ ...|+...-..|+.++... |++++|+..++.+.+. +|+|+.
T Consensus 179 ~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~--g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~ 256 (310)
T 3mv2_B 179 NLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQ--RNIAEAQGIVELLLSDYYSVEQKENAVLYKPT 256 (310)
T ss_dssp HHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHH--TCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHH
T ss_pred HHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHc--CCHHHHHHHHHHHHHhcccccccccCCCCCHH
Confidence 33333 22222 566666666665 3334422222333334444 6666666666655554 355666
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHHh
Q 046194 768 NYVLLANMYASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 768 ~y~~l~~~~~~~g~~~~a~~~~~~m~~ 794 (934)
++..++.+....|+ +|.++++++++
T Consensus 257 ~LaN~i~l~~~lgk--~a~~l~~qL~~ 281 (310)
T 3mv2_B 257 FLANQITLALMQGL--DTEDLTNQLVK 281 (310)
T ss_dssp HHHHHHHHHHHTTC--TTHHHHHHHHH
T ss_pred HHHHHHHHHHHhCh--HHHHHHHHHHH
Confidence 66566555555665 56666666654
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.68 E-value=2.2e-07 Score=83.75 Aligned_cols=128 Identities=15% Similarity=0.252 Sum_probs=75.3
Q ss_pred ccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHh
Q 046194 630 WNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLG 709 (934)
Q Consensus 630 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~ 709 (934)
|..+...|...|++++|+.+|+++.+.+ +.+...+..+...+...|++++|..+|+.+.+.
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------------------ 64 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL------------------ 64 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------------------
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH------------------
Confidence 4445555555566666666666555532 122334444444555555555555555555432
Q ss_pred hcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHH
Q 046194 710 RAGELDKIEEFINKMPITPNSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKAR 789 (934)
Q Consensus 710 ~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~ 789 (934)
.+.+...|..+...+... |+.+.|...++++.+..|.++..+..++.+|...|++++|.+.+
T Consensus 65 ----------------~~~~~~~~~~l~~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 126 (136)
T 2fo7_A 65 ----------------DPRSAEAWYNLGNAYYKQ--GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYY 126 (136)
T ss_dssp ----------------CTTCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred ----------------CCCchHHHHHHHHHHHHh--cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHH
Confidence 112344555556666666 67777777777777777777777777777777777777777777
Q ss_pred HHHHh
Q 046194 790 KAMKE 794 (934)
Q Consensus 790 ~~m~~ 794 (934)
+.+.+
T Consensus 127 ~~~~~ 131 (136)
T 2fo7_A 127 QKALE 131 (136)
T ss_dssp HHHHH
T ss_pred HHHHc
Confidence 66654
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.67 E-value=2.7e-07 Score=83.17 Aligned_cols=124 Identities=17% Similarity=0.228 Sum_probs=98.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHhccCCC---CCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 046194 598 IGSALVDMYSKCGRIDYASRFFDLMPV---RNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSH 674 (934)
Q Consensus 598 ~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 674 (934)
.+..+...|...|++++|..+|+.+.. .+...|..+...+...|++++|+..|+++.+.+ +.+...+..+...+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 567788899999999999999998753 456688889999999999999999999998854 3345667778888899
Q ss_pred hCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhC
Q 046194 675 AGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKM 724 (934)
Q Consensus 675 ~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m 724 (934)
.|++++|.++++.+.+. .+.+...+..++..+.+.|++++|.+.++++
T Consensus 82 ~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 129 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 129 (136)
T ss_dssp TTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 99999999999988773 2233556667777777777777777777654
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.67 E-value=4e-07 Score=91.12 Aligned_cols=179 Identities=11% Similarity=-0.054 Sum_probs=110.4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHhccCCC--CCc----ccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChh----hHH
Q 046194 597 VIGSALVDMYSKCGRIDYASRFFDLMPV--RNV----YSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHV----TFV 666 (934)
Q Consensus 597 ~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----t~~ 666 (934)
..+..+...+.+.|++++|...|+.+.. |+. ..+..+..+|.+.|++++|+..|+++.+. .|+.. .+.
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~~ 82 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVMY 82 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHHH
Confidence 3444455667777777777777777653 321 35666677777777777777777777763 44432 233
Q ss_pred HHHHHHHh------------------hCcHHHHHHHHHHhHHhhCCCCCc-ccHHHHHHHHhhcCChHHHHHHHHhCCCC
Q 046194 667 GVLSACSH------------------AGLVDEGFKHFKSMSQVYGLIPQL-EQFSCMVDLLGRAGELDKIEEFINKMPIT 727 (934)
Q Consensus 667 ~ll~a~~~------------------~g~~~~a~~~~~~m~~~~~~~p~~-~~y~~li~~l~~~g~~~~A~~~~~~m~~~ 727 (934)
.+..++.. .|+.++|+..|+.+.+. .|+. ..+..... .+.+....
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~----l~~~~~~~--------- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKR----LVFLKDRL--------- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHH----HHHHHHHH---------
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHH----HHHHHHHH---------
Confidence 33333332 34555555555555442 2331 11111110 00000000
Q ss_pred CCHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCC---chHHHHHHHHHcCCChHHHHHHHHHHHhCCC
Q 046194 728 PNSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNA---VNYVLLANMYASGGKWEDVAKARKAMKEAEV 797 (934)
Q Consensus 728 p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 797 (934)
......+...+... |+++.|...++++++..|+++ ..+..++.+|.+.|++++|.+.++.+...+.
T Consensus 147 --~~~~~~~a~~~~~~--~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 147 --AKYEYSVAEYYTER--GAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp --HHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred --HHHHHHHHHHHHHc--CcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 00112345566677 999999999999999999986 5689999999999999999999998887654
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.66 E-value=4.4e-07 Score=94.11 Aligned_cols=163 Identities=10% Similarity=0.040 Sum_probs=90.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHhccCCC-------C----CcccccHHHHHHHHcCChHHHHHHHHHHHHC------CCC
Q 046194 597 VIGSALVDMYSKCGRIDYASRFFDLMPV-------R----NVYSWNSMISGYARHGHGDKALTLFSQMKLD------GPL 659 (934)
Q Consensus 597 ~~~~~li~~y~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~ 659 (934)
.++..+...|...|++++|.+.|++... + ...+|..+...|...|++++|+..|+++.+. +-.
T Consensus 86 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 165 (283)
T 3edt_B 86 ATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDD 165 (283)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 3444455555555555555555544321 1 1235556666666677777777777766653 112
Q ss_pred CC-hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhh------CCCCC-cccHHHHHHHHhhcC------ChHHHHHHHHhCC
Q 046194 660 PD-HVTFVGVLSACSHAGLVDEGFKHFKSMSQVY------GLIPQ-LEQFSCMVDLLGRAG------ELDKIEEFINKMP 725 (934)
Q Consensus 660 p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~------~~~p~-~~~y~~li~~l~~~g------~~~~A~~~~~~m~ 725 (934)
|+ ..++..+...+...|++++|..+|++..+.. ...|. ...|..+...+...+ .+.++...++...
T Consensus 166 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (283)
T 3edt_B 166 PNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACK 245 (283)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCC
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcC
Confidence 32 3456677777888888888888888776531 12233 333333333333322 3444555555553
Q ss_pred -CCCC-HHHHHHHHHHHHhccCCCcHHHHHHHHHHHhc
Q 046194 726 -ITPN-SLIWRTVLGACCRANCRKTELGRKAANMLFEM 761 (934)
Q Consensus 726 -~~p~-~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~ 761 (934)
..|+ ..++..+...+... |+.+.|...+++++++
T Consensus 246 ~~~~~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 246 VDSPTVNTTLRSLGALYRRQ--GKLEAAHTLEDCASRN 281 (283)
T ss_dssp CCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHh
Confidence 2233 44677788888888 9999999999988765
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=4.5e-08 Score=90.86 Aligned_cols=120 Identities=13% Similarity=0.008 Sum_probs=100.8
Q ss_pred HHHHHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccC
Q 046194 669 LSACSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCRANC 745 (934)
Q Consensus 669 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~ 745 (934)
...+...|++++|+..++.... ..|+ ...+-.+..+|.+.|++++|.+.+++. .+.| +..+|..+...+...
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~-- 78 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELE-- 78 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--
T ss_pred HHHHHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--
Confidence 3445677899999999888754 4455 666778999999999999999999987 5566 577899999999998
Q ss_pred CCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHH-HHHHH
Q 046194 746 RKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKA-RKAMK 793 (934)
Q Consensus 746 ~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~-~~~m~ 793 (934)
|+.+.|...++++++++|+++..|..++.+|.+.|++++|.+. +++..
T Consensus 79 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al 127 (150)
T 4ga2_A 79 ENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAA 127 (150)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999887765 45544
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.65 E-value=5.5e-07 Score=92.33 Aligned_cols=242 Identities=9% Similarity=-0.007 Sum_probs=157.6
Q ss_pred HHhcCCHHHHHHHHHhhccCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhchhhHHHHHHH
Q 046194 504 YGKCGEMDDCEKIFARMSERRDEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVATLERGMEV 583 (934)
Q Consensus 504 ~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i 583 (934)
..-.|.+..+..-...+........-.-+.++|.-.|++.... .-.|....+..+...+ ..+ +...
T Consensus 23 ~fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~~---------~~~~~~~a~~~la~~~-~~~----a~~~ 88 (310)
T 3mv2_B 23 NYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQD---------PTSKLGKVLDLYVQFL-DTK----NIEE 88 (310)
T ss_dssp HHTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCCC---------SSSTTHHHHHHHHHHH-TTT----CCHH
T ss_pred HHHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccCC---------CCCHHHHHHHHHHHHh-ccc----HHHH
Confidence 3446777777775554433311122223446677677665321 1223333333333222 222 5566
Q ss_pred HHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCCC-----CcccccHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 046194 584 HACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPVR-----NVYSWNSMISGYARHGHGDKALTLFSQMKLDGP 658 (934)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 658 (934)
++..+..+ .++......+..+|...|++++|++++.+...+ +...+-.++..|.+.|+.+.|.+.+++|.+ .
T Consensus 89 l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~--~ 165 (310)
T 3mv2_B 89 LENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN--A 165 (310)
T ss_dssp HHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--H
T ss_pred HHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--c
Confidence 66665554 344455567888889999999999999876432 344677788899999999999999999988 4
Q ss_pred CC-----ChhhHHHHHHHH--HhhC--cHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhC-CC--
Q 046194 659 LP-----DHVTFVGVLSAC--SHAG--LVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKM-PI-- 726 (934)
Q Consensus 659 ~p-----~~~t~~~ll~a~--~~~g--~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m-~~-- 726 (934)
.| +..+...+..++ ...| ++++|..+|+++.+. .|+......+..++.+.|++++|.+.++.+ ..
T Consensus 166 ~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p 242 (310)
T 3mv2_B 166 IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYY 242 (310)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHH
T ss_pred CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 67 356666677663 3334 899999999998764 344233344455888999999999998765 21
Q ss_pred --------CCC-HHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchH
Q 046194 727 --------TPN-SLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNY 769 (934)
Q Consensus 727 --------~p~-~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y 769 (934)
.|+ +.+.-.++...... |+ .+.+.++++.+..|++|-..
T Consensus 243 ~~~~k~~~~p~~~~~LaN~i~l~~~l--gk--~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 243 SVEQKENAVLYKPTFLANQITLALMQ--GL--DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp HTTTCHHHHSSHHHHHHHHHHHHHHT--TC--TTHHHHHHHHHTTCCCHHHH
T ss_pred cccccccCCCCCHHHHHHHHHHHHHh--Ch--HHHHHHHHHHHhCCCChHHH
Confidence 254 55555666666666 76 78999999999999987654
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.62 E-value=5.7e-08 Score=114.70 Aligned_cols=152 Identities=12% Similarity=0.068 Sum_probs=70.0
Q ss_pred hchhhHHHHHHHHHHHHHh------CC-CCcHhHHHHHHHHHHhcCCHHHHHHHhccCCC---CCcccccHHHHHHHHcC
Q 046194 572 ASVATLERGMEVHACGVRA------CL-EFDVVIGSALVDMYSKCGRIDYASRFFDLMPV---RNVYSWNSMISGYARHG 641 (934)
Q Consensus 572 ~~~~~~~~a~~i~~~~~~~------~~-~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g 641 (934)
...|++++|.+.++.+.+. .. +.+...+..+...|.+.|++++|.+.|++..+ .+...|..+...|...|
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g 481 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTG 481 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcC
Confidence 4555566666655555410 01 12334444444455555555555555544432 12334444444555555
Q ss_pred ChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhhcCChHHHHH
Q 046194 642 HGDKALTLFSQMKLDGPLPD-HVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGRAGELDKIEE 719 (934)
Q Consensus 642 ~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~ 719 (934)
++++|++.|++..+. .|+ ...+..+..++...|++++ ++.|++..+ +.|+ ...|..+..+|.+.|++++|.+
T Consensus 482 ~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 482 DYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWS---TNDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp CHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHH---hCCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 555555555555442 332 3334444444455555555 555544443 2232 3344444455555555555555
Q ss_pred HHHhC-CCCCC
Q 046194 720 FINKM-PITPN 729 (934)
Q Consensus 720 ~~~~m-~~~p~ 729 (934)
.+++. ...|+
T Consensus 556 ~~~~al~l~P~ 566 (681)
T 2pzi_A 556 TLDEVPPTSRH 566 (681)
T ss_dssp HHHTSCTTSTT
T ss_pred HHHhhcccCcc
Confidence 55444 33443
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.58 E-value=3.8e-07 Score=93.77 Aligned_cols=204 Identities=9% Similarity=-0.013 Sum_probs=138.2
Q ss_pred CHhHHHHHHHHHhchhhHHHHHHHHHHHHHhCCCC--cHhHHHHHHHHHHhcCCHHHHHHHhccCCC--CC----ccccc
Q 046194 560 DHFTFATVLSACASVATLERGMEVHACGVRACLEF--DVVIGSALVDMYSKCGRIDYASRFFDLMPV--RN----VYSWN 631 (934)
Q Consensus 560 ~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~--~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~----~~~~~ 631 (934)
+...+......+.+.|++++|...+..+++..... ....+..+...|.+.|++++|...|+.... |+ ..+|.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 45666677778889999999999999998864321 166778889999999999999999998763 32 23567
Q ss_pred HHHHHHHH--------cCChHHHHHHHHHHHHCCCCCChhh-HHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHH
Q 046194 632 SMISGYAR--------HGHGDKALTLFSQMKLDGPLPDHVT-FVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFS 702 (934)
Q Consensus 632 ~li~~~~~--------~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~ 702 (934)
.+..++.. .|++++|+..|++..+. .|+... ...+. .+...... -...+.
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~--------------~~~~~~~~-----~~~~~~ 152 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDATQ--------------KIRELRAK-----LARKQY 152 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHHH--------------HHHHHHHH-----HHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHHH--------------HHHHHHHH-----HHHHHH
Confidence 77888888 99999999999999984 566432 21111 00111000 011245
Q ss_pred HHHHHHhhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhc--------cCCCcHHHHHHHHHHHhcCCCCCc--
Q 046194 703 CMVDLLGRAGELDKIEEFINKM-PITPN----SLIWRTVLGACCRA--------NCRKTELGRKAANMLFEMEPQNAV-- 767 (934)
Q Consensus 703 ~li~~l~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~--------~~~~~~~a~~~~~~~~~~~p~~~~-- 767 (934)
.+...|.+.|++++|...+++. ...|+ ...+..+..++... ..|+++.|...++++++..|+++.
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 232 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLR 232 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHH
Confidence 5667777788888888777766 22332 33555555555532 016779999999999999999864
Q ss_pred -hHHHHHHHHHcCCChHH
Q 046194 768 -NYVLLANMYASGGKWED 784 (934)
Q Consensus 768 -~y~~l~~~~~~~g~~~~ 784 (934)
.+..+..++...|+.++
T Consensus 233 ~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 233 TAEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhhh
Confidence 34455555555554444
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=3.3e-07 Score=95.57 Aligned_cols=160 Identities=6% Similarity=-0.102 Sum_probs=125.7
Q ss_pred CcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHH-
Q 046194 626 NVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPD-HVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSC- 703 (934)
Q Consensus 626 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~- 703 (934)
+...+..+...+.+.|++++|+..|++..+. .|+ ...+..+...+...|++++|...++.+.. ..|+......
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~---~~p~~~~~~~~ 190 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL---QDQDTRYQGLV 190 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG---GGCSHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch---hhcchHHHHHH
Confidence 3445566777788889999999999998884 565 55677778888999999999999988865 3455332222
Q ss_pred HHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCC--CchHHHHHHHHHcC
Q 046194 704 MVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQN--AVNYVLLANMYASG 779 (934)
Q Consensus 704 li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~y~~l~~~~~~~ 779 (934)
....+.+.|+.++|.+.+++. ...| +...+..|...+... |+.+.|...++++++.+|++ +..+..|+.+|...
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~--g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~ 268 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQV--GRNEEALELLFGHLRXDLTAADGQTRXTFQEILAAL 268 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHc--ccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHc
Confidence 233466778888888888776 4445 577888898899888 99999999999999999988 88899999999999
Q ss_pred CChHHHHHHHHHH
Q 046194 780 GKWEDVAKARKAM 792 (934)
Q Consensus 780 g~~~~a~~~~~~m 792 (934)
|+.++|...+++.
T Consensus 269 g~~~~a~~~~r~a 281 (287)
T 3qou_A 269 GTGDALASXYRRQ 281 (287)
T ss_dssp CTTCHHHHHHHHH
T ss_pred CCCCcHHHHHHHH
Confidence 9999988776654
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.56 E-value=5.5e-07 Score=106.31 Aligned_cols=169 Identities=7% Similarity=-0.098 Sum_probs=105.6
Q ss_pred HhcCChhHHHHHHHHHHH------cCCCC-CHhHHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhc
Q 046194 537 IHNELLPKAMNLVWFMMQ------RGQRL-DHFTFATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKC 609 (934)
Q Consensus 537 ~~~g~~~~A~~l~~~m~~------~g~~p-~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~ 609 (934)
...|++++|++.|++... ....| +...+..+..++...|++++|.+.++.+++... .+...+..+...|.+.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG-WRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc-chHHHHHHHHHHHHHc
Confidence 566777777777777661 01223 335555666667777777777777777766432 2456666667777777
Q ss_pred CCHHHHHHHhccCCC--C-CcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhCcHHHHHHHH
Q 046194 610 GRIDYASRFFDLMPV--R-NVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPD-HVTFVGVLSACSHAGLVDEGFKHF 685 (934)
Q Consensus 610 g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~ 685 (934)
|++++|.+.|++..+ | +...|..+..+|.+.|++++ ++.|++..+. .|+ ...+..+..++...|++++|++.|
T Consensus 481 g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp TCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 777777777776542 3 44566677777777777777 7777777763 444 455666666777777777777777
Q ss_pred HHhHHhhCCCCC-cccHHHHHHHHhhcC
Q 046194 686 KSMSQVYGLIPQ-LEQFSCMVDLLGRAG 712 (934)
Q Consensus 686 ~~m~~~~~~~p~-~~~y~~li~~l~~~g 712 (934)
++..+ +.|+ ...|..+..+|...|
T Consensus 558 ~~al~---l~P~~~~a~~~~~~~~~~~~ 582 (681)
T 2pzi_A 558 DEVPP---TSRHFTTARLTSAVTLLSGR 582 (681)
T ss_dssp HTSCT---TSTTHHHHHHHHHHHTC---
T ss_pred Hhhcc---cCcccHHHHHHHHHHHHccC
Confidence 76644 4455 455555555554433
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.52 E-value=4.9e-07 Score=80.83 Aligned_cols=93 Identities=9% Similarity=0.137 Sum_probs=54.2
Q ss_pred ccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 046194 699 EQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMY 776 (934)
Q Consensus 699 ~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~ 776 (934)
..+...+..|.+.|++++|++.|++. ...| +..+|..+..++... |+.+.|...++++++++|+++..|..++.+|
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~--~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKL--MEFQRALDDCDTCIRLDSKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhh--ccHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 34444555555555555555555554 2333 345555555555555 6666666666666666666666666666666
Q ss_pred HcCCChHHHHHHHHHHH
Q 046194 777 ASGGKWEDVAKARKAMK 793 (934)
Q Consensus 777 ~~~g~~~~a~~~~~~m~ 793 (934)
...|++++|.+.+++..
T Consensus 92 ~~~~~~~~A~~~~~~al 108 (126)
T 4gco_A 92 VAMREWSKAQRAYEDAL 108 (126)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHH
Confidence 66666666666665554
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.51 E-value=3.6e-07 Score=87.44 Aligned_cols=154 Identities=8% Similarity=0.028 Sum_probs=93.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHH-Hhh
Q 046194 633 MISGYARHGHGDKALTLFSQMKLDGPLPD-HVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDL-LGR 710 (934)
Q Consensus 633 li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~-l~~ 710 (934)
+...+.+.|++++|+..|++..+. .|+ ...+..+...+...|++++|+..|+...+. .|+...+..+... +.+
T Consensus 12 ~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 12 QVSELLQQGEHAQALNVIQTLSDE--LQSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSCHH--HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHHHHHh
Confidence 344455555555555555555442 333 334445555555566666666665555432 2222222111111 112
Q ss_pred cCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCC--CchHHHHHHHHHcCCChHHHH
Q 046194 711 AGELDKIEEFINKM-PITP-NSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQN--AVNYVLLANMYASGGKWEDVA 786 (934)
Q Consensus 711 ~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~y~~l~~~~~~~g~~~~a~ 786 (934)
.+...+|.+.+++. ...| +...|..+...+... |+.++|...++++++.+|+. +..+..++.+|...|+.++|.
T Consensus 87 ~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~--g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 87 QAAESPELKRLEQELAANPDNFELACELAVQYNQV--GRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--ccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 22223455556554 3455 467778888888888 89999999999999998875 558889999999999999988
Q ss_pred HHHHHHH
Q 046194 787 KARKAMK 793 (934)
Q Consensus 787 ~~~~~m~ 793 (934)
..++...
T Consensus 165 ~~y~~al 171 (176)
T 2r5s_A 165 SKYRRQL 171 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8777654
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=6.7e-07 Score=103.62 Aligned_cols=160 Identities=9% Similarity=0.010 Sum_probs=118.9
Q ss_pred cCCHHHHHHHhccCCC--C-CcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhCcHHHHHHH
Q 046194 609 CGRIDYASRFFDLMPV--R-NVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPD-HVTFVGVLSACSHAGLVDEGFKH 684 (934)
Q Consensus 609 ~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~ 684 (934)
.|++++|.+.|++..+ | +...|..+...|...|++++|++.|++..+. .|+ ...+..+..++...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4788999999998764 3 4568888999999999999999999999984 565 66788888889999999999999
Q ss_pred HHHhHHhhCCCCC-cccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc-cCCCcHHHHHHHHHHHh
Q 046194 685 FKSMSQVYGLIPQ-LEQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCRA-NCRKTELGRKAANMLFE 760 (934)
Q Consensus 685 ~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~-~~~~~~~a~~~~~~~~~ 760 (934)
|++..+. .|+ ...+..+..+|.+.|++++|.+.+++. ...| +...+..+...+... .+|+.+.|...++++++
T Consensus 80 ~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 80 LQQASDA---APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHhc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 9999873 354 778889999999999999999999987 4455 456777777766654 12688999999999999
Q ss_pred cCCCCCchHHHHH
Q 046194 761 MEPQNAVNYVLLA 773 (934)
Q Consensus 761 ~~p~~~~~y~~l~ 773 (934)
.+|++...|..++
T Consensus 157 ~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 157 QGVGAVEPFAFLS 169 (568)
T ss_dssp HTCCCSCHHHHTT
T ss_pred cCCcccChHHHhC
Confidence 9999998888776
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.49 E-value=4.4e-07 Score=83.74 Aligned_cols=101 Identities=5% Similarity=-0.049 Sum_probs=88.0
Q ss_pred CCCCC-cccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchH
Q 046194 693 GLIPQ-LEQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNY 769 (934)
Q Consensus 693 ~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y 769 (934)
.+.|+ ...+..+...+.+.|++++|.+.|++. ...| +...|..+..++... |+++.|...++++++++|+++..|
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~--g~~~~Ai~~~~~al~l~P~~~~~~ 107 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIK--EQFQQAADLYAVAFALGKNDYTPV 107 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHSSSCCHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH--ccHHHHHHHHHHHHhhCCCCcHHH
Confidence 45555 567777888888999999999998887 4555 577899999999998 999999999999999999999999
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHhC
Q 046194 770 VLLANMYASGGKWEDVAKARKAMKEA 795 (934)
Q Consensus 770 ~~l~~~~~~~g~~~~a~~~~~~m~~~ 795 (934)
..++.+|...|++++|.+.+++..+.
T Consensus 108 ~~lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 108 FHTGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999999999988753
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.47 E-value=2.8e-06 Score=83.94 Aligned_cols=161 Identities=6% Similarity=-0.082 Sum_probs=125.1
Q ss_pred CCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhC----cHHHHHHHHHHhHHhhCCCCCccc
Q 046194 625 RNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAG----LVDEGFKHFKSMSQVYGLIPQLEQ 700 (934)
Q Consensus 625 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g----~~~~a~~~~~~m~~~~~~~p~~~~ 700 (934)
.+..++..+...|...+++++|+..|++..+.| +...+..|...|.. + +.++|.++|+...+. -+...
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~----g~~~a 87 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA----GSKSG 87 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT----TCHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC----CCHHH
Confidence 355566667777777788888888888888765 44556666666666 6 889999998888662 34667
Q ss_pred HHHHHHHHhh----cCChHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh----ccCCCcHHHHHHHHHHHhcCCCCCch
Q 046194 701 FSCMVDLLGR----AGELDKIEEFINKM-PITPN---SLIWRTVLGACCR----ANCRKTELGRKAANMLFEMEPQNAVN 768 (934)
Q Consensus 701 y~~li~~l~~----~g~~~~A~~~~~~m-~~~p~---~~~~~~ll~~~~~----~~~~~~~~a~~~~~~~~~~~p~~~~~ 768 (934)
+..|..+|.. .+++++|.+++++. ...|+ +..+..|...+.. . ++.+.|...++++.++ |.++..
T Consensus 88 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~--~d~~~A~~~~~~A~~~-~~~~~a 164 (212)
T 3rjv_A 88 EIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGP--EDDVKASEYFKGSSSL-SRTGYA 164 (212)
T ss_dssp HHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSS--CCHHHHHHHHHHHHHT-SCTTHH
T ss_pred HHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCC--CCHHHHHHHHHHHHHc-CCCHHH
Confidence 7788888877 78999999999887 44453 6778888888777 5 7899999999999998 777888
Q ss_pred HHHHHHHHHcC-C-----ChHHHHHHHHHHHhCC
Q 046194 769 YVLLANMYASG-G-----KWEDVAKARKAMKEAE 796 (934)
Q Consensus 769 y~~l~~~~~~~-g-----~~~~a~~~~~~m~~~~ 796 (934)
+..|+.+|... | +.++|.+.+++..+.|
T Consensus 165 ~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 165 EYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 99999999764 3 8999999998887655
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.46 E-value=6.7e-07 Score=79.90 Aligned_cols=113 Identities=11% Similarity=0.044 Sum_probs=89.7
Q ss_pred CCCC-hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHH
Q 046194 658 PLPD-HVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIW 733 (934)
Q Consensus 658 ~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~ 733 (934)
+.|+ ...+......+.+.|++++|++.|++..+ +.|+ ...|..+..+|.+.|++++|++.+++. .+.| +...|
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~ 84 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVK---RDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGY 84 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHH
Confidence 4555 34566677778888888888888888776 2344 677888888888888888888888876 4445 46788
Q ss_pred HHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 046194 734 RTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANM 775 (934)
Q Consensus 734 ~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~ 775 (934)
..+..++... |++++|...++++++++|+++..+..|+++
T Consensus 85 ~~lg~~~~~~--~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 85 IRKAACLVAM--REWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHC--CCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 8888888888 999999999999999999998888877765
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.45 E-value=7.2e-07 Score=94.14 Aligned_cols=162 Identities=9% Similarity=0.019 Sum_probs=90.2
Q ss_pred HHHHHhcCCHHHHHHHhccCCC-----CC----cccccHHHHHHHHcCChHHHHHHHHHHHHCCC---CCC--hhhHHHH
Q 046194 603 VDMYSKCGRIDYASRFFDLMPV-----RN----VYSWNSMISGYARHGHGDKALTLFSQMKLDGP---LPD--HVTFVGV 668 (934)
Q Consensus 603 i~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---~p~--~~t~~~l 668 (934)
...|...|++++|...|..... .+ ..+|+.+...|...|++++|+..|++..+.-. .|. ..++..+
T Consensus 43 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l 122 (307)
T 2ifu_A 43 AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRA 122 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4456666777777666665431 11 22566666666777777777777776554210 111 2345555
Q ss_pred HHHHHhhCcHHHHHHHHHHhHHhhCCCCC----cccHHHHHHHHhhcCChHHHHHHHHhC-CC---CCC----HHHHHHH
Q 046194 669 LSACSHAGLVDEGFKHFKSMSQVYGLIPQ----LEQFSCMVDLLGRAGELDKIEEFINKM-PI---TPN----SLIWRTV 736 (934)
Q Consensus 669 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~y~~li~~l~~~g~~~~A~~~~~~m-~~---~p~----~~~~~~l 736 (934)
...|.. |++++|+..|++..+.+.-..+ ...+..+..+|.+.|++++|.+.+++. .+ .++ ...+..+
T Consensus 123 g~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 201 (307)
T 2ifu_A 123 GKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQ 201 (307)
T ss_dssp HHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHH
Confidence 555655 7777777777666553211111 345566666666777777777666665 11 122 1134444
Q ss_pred HHHHHhccCCCcHHHHHHHHHHHhcCCCCCch
Q 046194 737 LGACCRANCRKTELGRKAANMLFEMEPQNAVN 768 (934)
Q Consensus 737 l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 768 (934)
...+... |+.+.|...+++++ +.|.....
T Consensus 202 g~~~~~~--g~~~~A~~~~~~al-~~p~~~~~ 230 (307)
T 2ifu_A 202 VLVQLHR--ADYVAAQKCVRESY-SIPGFSGS 230 (307)
T ss_dssp HHHHHHT--TCHHHHHHHHHHHT-TSTTSTTS
T ss_pred HHHHHHc--CCHHHHHHHHHHHh-CCCCCCCC
Confidence 4444455 66677777777777 66665554
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.45 E-value=1.2e-06 Score=86.40 Aligned_cols=126 Identities=13% Similarity=0.130 Sum_probs=94.2
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHh
Q 046194 632 SMISGYARHGHGDKALTLFSQMKLDGPLPD-HVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLG 709 (934)
Q Consensus 632 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~ 709 (934)
.+...|.+.|++++|+..|++..+. .|+ ...+..+...+...|++++|+..|++..+ +.|+ ...|..+..+|.
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~ 133 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQK--APNNVDCLEACAEMQVCRGQEKDALRMYEKILQ---LEADNLAANIFLGNYYY 133 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHH
Confidence 3788888999999999999999884 565 56778888889999999999999999887 4565 778888888887
Q ss_pred hcCC--hHHHHHHHHhCCCCCCH--HHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCC
Q 046194 710 RAGE--LDKIEEFINKMPITPNS--LIWRTVLGACCRANCRKTELGRKAANMLFEMEPQN 765 (934)
Q Consensus 710 ~~g~--~~~A~~~~~~m~~~p~~--~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~ 765 (934)
..|. .+++...++.. ..|++ ..|..+..++... |+++.|...+++++++.|++
T Consensus 134 ~~~~~~~~~~~~~~~~~-~~~~~~~~a~~~~g~~~~~~--~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 134 LTAEQEKKKLETDYKKL-SSPTKMQYARYRDGLSKLFT--TRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHH--HTHHHHHHHHHHHTTTSCCH
T ss_pred HHhHHHHHHHHHHHHHH-hCCCchhHHHHHHHHHHHHc--cCHHHHHHHHHHHHHhCCCH
Confidence 6654 44556666665 23443 3444445555566 89999999999999999963
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.44 E-value=1.5e-06 Score=91.65 Aligned_cols=220 Identities=11% Similarity=0.024 Sum_probs=151.1
Q ss_pred cCCHHHHHHHHHhhccCCCcchHHHHHHHHHh-cCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhchhhHHHHHHHHH
Q 046194 507 CGEMDDCEKIFARMSERRDEVSWNSMISGYIH-NELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVATLERGMEVHA 585 (934)
Q Consensus 507 ~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~ 585 (934)
.|++++|.+++++..+. .. .++.. .+++++|...|.+. ...+...|++++|...+.
T Consensus 4 ~~~~~eA~~~~~~a~k~-~~-------~~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~ 60 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKY-LK-------TSFMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDAYL 60 (307)
T ss_dssp HHHHHHHHHHHHHHHHH-HC-------CCSSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHH-cc-------ccccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHH
Confidence 56677888887776553 11 02222 57777887777665 345677899999999988
Q ss_pred HHHHhC----CCC-cHhHHHHHHHHHHhcCCHHHHHHHhccCCC-------CC--cccccHHHHHHHHcCChHHHHHHHH
Q 046194 586 CGVRAC----LEF-DVVIGSALVDMYSKCGRIDYASRFFDLMPV-------RN--VYSWNSMISGYARHGHGDKALTLFS 651 (934)
Q Consensus 586 ~~~~~~----~~~-~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-------~~--~~~~~~li~~~~~~g~~~~A~~l~~ 651 (934)
.+.+.. -.+ -...++.+...|.+.|++++|...|++... +. ..+|+.+...|.. |++++|+..|+
T Consensus 61 ~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~ 139 (307)
T 2ifu_A 61 QEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQ 139 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence 776532 111 245778888999999999999988876541 11 2477888888988 99999999999
Q ss_pred HHHHCCCCC-C----hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC----cccHHHHHHHHhhcCChHHHHHHHH
Q 046194 652 QMKLDGPLP-D----HVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ----LEQFSCMVDLLGRAGELDKIEEFIN 722 (934)
Q Consensus 652 ~m~~~g~~p-~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~y~~li~~l~~~g~~~~A~~~~~ 722 (934)
+..+..... + ..++..+...+...|++++|+..|++..+...-.++ ...+..++.++...|++++|.+.++
T Consensus 140 ~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~ 219 (307)
T 2ifu_A 140 QAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVR 219 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 987631111 1 356778888899999999999999998774211111 2356677778888899999999998
Q ss_pred hCCCCCC---H---HHHHHHHHHHHhccCCCcHHHHH
Q 046194 723 KMPITPN---S---LIWRTVLGACCRANCRKTELGRK 753 (934)
Q Consensus 723 ~m~~~p~---~---~~~~~ll~~~~~~~~~~~~~a~~ 753 (934)
+.-..|+ . .....++.++ .. |+.+....
T Consensus 220 ~al~~p~~~~~~e~~~l~~l~~~~-~~--~d~~~~~~ 253 (307)
T 2ifu_A 220 ESYSIPGFSGSEDCAALEDLLQAY-DE--QDEEQLLR 253 (307)
T ss_dssp HHTTSTTSTTSHHHHHHHHHHHHH-HT--TCHHHHHH
T ss_pred HHhCCCCCCCCHHHHHHHHHHHHH-Hh--cCHHHHHH
Confidence 7534443 1 1334445444 34 56554444
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=5e-07 Score=83.42 Aligned_cols=99 Identities=10% Similarity=0.049 Sum_probs=83.5
Q ss_pred CCCC-cccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHH
Q 046194 694 LIPQ-LEQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYV 770 (934)
Q Consensus 694 ~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~ 770 (934)
+.|+ ...+..+...+.+.|++++|.+.|++. ...| +...|..+..++... |+++.|...++++++++|+++..|.
T Consensus 16 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~--g~~~~A~~~~~~al~l~p~~~~~~~ 93 (148)
T 2vgx_A 16 ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAM--GQYDLAIHSYSYGAVMDIXEPRFPF 93 (148)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHSTTCTHHHH
T ss_pred CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHH--hhHHHHHHHHHHHHhcCCCCchHHH
Confidence 3443 556667778888888888888888876 3444 677888888888888 9999999999999999999999999
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHh
Q 046194 771 LLANMYASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 771 ~l~~~~~~~g~~~~a~~~~~~m~~ 794 (934)
.++.+|...|++++|.+.++...+
T Consensus 94 ~lg~~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 94 HAAECLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999999887764
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.43 E-value=4.2e-05 Score=85.90 Aligned_cols=367 Identities=8% Similarity=0.004 Sum_probs=193.0
Q ss_pred hCC-ChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCchHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhcCC-hHHH
Q 046194 334 QNG-CYEEAIMNFCAMRRDGLMSSNFSLISTLSSCASLGWIMLGQQIHGEGLKLGLDSDVSVSNALLSLYADAGY-LSRC 411 (934)
Q Consensus 334 ~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~-~~~A 411 (934)
+.| +...|..+|+.+... -|. ++.+.++++|+..++. .|++.+|...+..-.+.+. .+..
T Consensus 6 ~~~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i 67 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKL 67 (493)
T ss_dssp ------CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CT
T ss_pred HcCcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHH
Confidence 345 377778888777652 222 8899999999998884 4688888888887777663 2344
Q ss_pred HHHHhhCC------CCCccchHHHHHHHH----hCCccHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhc---cCCchHH
Q 046194 412 LKVFFLMP------EHDQVSWNSVIGAFA----DSEALVSEAVKYYLDMRRAGWSPNGVTFINILAAASS---FSMGKLG 478 (934)
Q Consensus 412 ~~~f~~~~------~~~~~~~~~li~~~~----~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~---~~~~~~a 478 (934)
..+|+... ..+...|...+.-+. .+++. +.+..+|++.+.. ++. .+..+...+.. ..+...+
T Consensus 68 ~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~-~~vR~iy~rAL~~--P~~--~~~~lw~~Y~~fE~~~~~~~~ 142 (493)
T 2uy1_A 68 YEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRI-EKIRNGYMRALQT--PMG--SLSELWKDFENFELELNKITG 142 (493)
T ss_dssp HHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHH-HHHHHHHHHHHTS--CCT--THHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHH-HHHHHHHHHHHhC--hhh--hHHHHHHHHHHHHHHhccccH
Confidence 45555432 124456666665543 23455 6777777777752 211 11122211111 0111111
Q ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccC---CCcchHHHHHHHHHhcCC-------hhHHHHH
Q 046194 479 HQVHAQVIKYNVANETTIENALLSCYGKCGEMDDCEKIFARMSER---RDEVSWNSMISGYIHNEL-------LPKAMNL 548 (934)
Q Consensus 479 ~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---p~~~~~~~li~~~~~~g~-------~~~A~~l 548 (934)
..+ +.-+ .+.+..|..+++.+... .+...|...+.--..++. .+.+..+
T Consensus 143 ~~~-------------------~~~~--~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ 201 (493)
T 2uy1_A 143 KKI-------------------VGDT--LPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFI 201 (493)
T ss_dssp HHH-------------------HHHH--HHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHH
T ss_pred HHH-------------------HHHH--hHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHH
Confidence 111 1111 11223333333332221 133355554443222211 2345667
Q ss_pred HHHHHHcCCCCCHhHHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHH-HHHhccCC----
Q 046194 549 VWFMMQRGQRLDHFTFATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYA-SRFFDLMP---- 623 (934)
Q Consensus 549 ~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A-~~~~~~~~---- 623 (934)
|++++.. .+.+...+...+.-+.+.|+.+.|..+++.+++. +.+...+.. |+...+.++. ..+.+...
T Consensus 202 ye~al~~-~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~~~~l~~~~~~~~~ 274 (493)
T 2uy1_A 202 HNYILDS-FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAVYGDLKRKYSMGEA 274 (493)
T ss_dssp HHHHHHH-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHHHHHHHHHTC----
T ss_pred HHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHHHHHHHHHHHhhcc
Confidence 7777664 2334556666666667778888888888888877 333333222 2221111111 11111100
Q ss_pred --------CCCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHH-HHhhCcHHHHHHHHHHhHHhhCC
Q 046194 624 --------VRNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSA-CSHAGLVDEGFKHFKSMSQVYGL 694 (934)
Q Consensus 624 --------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a-~~~~g~~~~a~~~~~~m~~~~~~ 694 (934)
......|...+..+.+++..+.|..+|++. +.. .++...|...... +...++.+.|..+|+...+.++-
T Consensus 275 ~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~ 352 (493)
T 2uy1_A 275 ESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD 352 (493)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT
T ss_pred chhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC
Confidence 011235666666666677788888888888 311 1222233221111 11233688888888888775422
Q ss_pred CCCcccHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhccCCCcHHHHHHHHHHH
Q 046194 695 IPQLEQFSCMVDLLGRAGELDKIEEFINKMPITPNSLIWRTVLGACCRANCRKTELGRKAANMLF 759 (934)
Q Consensus 695 ~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~ 759 (934)
. +..+...++...+.|+.+.|..++++.. .....|...+.-=..+ |+.+.+..++++..
T Consensus 353 ~--~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~--G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 353 S--TLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMV--GSMELFRELVDQKM 411 (493)
T ss_dssp C--HHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHH--SCHHHHHHHHHHHH
T ss_pred C--HHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHC--CCHHHHHHHHHHHH
Confidence 2 3445666777778888888888888872 3466777777766667 77776666665554
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=2.8e-06 Score=88.52 Aligned_cols=131 Identities=11% Similarity=-0.026 Sum_probs=110.6
Q ss_pred CC-hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhhcCChHHHHHHHHhC-CCCCCHHHHHHH
Q 046194 660 PD-HVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGRAGELDKIEEFINKM-PITPNSLIWRTV 736 (934)
Q Consensus 660 p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p~~~~~~~l 736 (934)
|+ ...+..+...+...|++++|...|++..+ ..|+ ...+..+..+|.+.|++++|.+.+++. ...|+...+...
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQ---LSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHH---hCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHH
Confidence 44 45566777788999999999999999987 3455 778899999999999999999999998 567776655444
Q ss_pred HHH-HHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 046194 737 LGA-CCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMKEA 795 (934)
Q Consensus 737 l~~-~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~ 795 (934)
... +... ++.+.|...++++++.+|+++..+..|+.+|...|++++|.+.++.+.+.
T Consensus 191 ~~~~l~~~--~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~ 248 (287)
T 3qou_A 191 AQIELLXQ--AADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRX 248 (287)
T ss_dssp HHHHHHHH--HTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhh--cccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 443 4455 78888999999999999999999999999999999999999999888753
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.35 E-value=7.8e-06 Score=80.66 Aligned_cols=145 Identities=8% Similarity=-0.084 Sum_probs=96.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHhccCCCCCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcH
Q 046194 599 GSALVDMYSKCGRIDYASRFFDLMPVRNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLV 678 (934)
Q Consensus 599 ~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 678 (934)
+..+...|...|++++|...|+....++...|..+...|...|++++|+..|++..+.. +.+...+..+..++...|++
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~ 87 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 87 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccH
Confidence 34456667788888888888888877777788888888888888888888888887742 22355677777777888888
Q ss_pred HHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhCCCCCC-HHHHHHHHHHHHhccCCCcHHHHHHHHH
Q 046194 679 DEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKMPITPN-SLIWRTVLGACCRANCRKTELGRKAANM 757 (934)
Q Consensus 679 ~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~~~p~-~~~~~~ll~~~~~~~~~~~~~a~~~~~~ 757 (934)
++|.+.|+...+. .|+..... +...| +...|+ ..+|..+...+... |+.+.|...+++
T Consensus 88 ~~A~~~~~~al~~---~~~~~~~~-----~~~~~-----------~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~ 146 (213)
T 1hh8_A 88 DLAIKDLKEALIQ---LRGNQLID-----YKILG-----------LQFKLFACEVLYNIAFMYAKK--EEWKKAEEQLAL 146 (213)
T ss_dssp HHHHHHHHHHHHT---TTTCSEEE-----CGGGT-----------BCCEEEHHHHHHHHHHHHHHT--TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh---CCCccHHH-----HHHhc-----------cccCccchHHHHHHHHHHHHc--cCHHHHHHHHHH
Confidence 8888888877663 22211000 00000 012332 34566666677766 788888888888
Q ss_pred HHhcCCCC
Q 046194 758 LFEMEPQN 765 (934)
Q Consensus 758 ~~~~~p~~ 765 (934)
++++.|++
T Consensus 147 al~~~p~~ 154 (213)
T 1hh8_A 147 ATSMKSEP 154 (213)
T ss_dssp HHTTCCSG
T ss_pred HHHcCccc
Confidence 88887765
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.35 E-value=5.8e-06 Score=81.64 Aligned_cols=124 Identities=10% Similarity=0.010 Sum_probs=95.2
Q ss_pred HHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 046194 665 FVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCR 742 (934)
Q Consensus 665 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~ 742 (934)
+..+...+...|++++|...|+.. +.|+...|..+...|.+.|++++|.+.+++. ...| +...|..+...+..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a-----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAV-----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTS-----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHH-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 334445566677777777777655 2456667777777777777777777777765 2333 46677888888888
Q ss_pred ccCCCcHHHHHHHHHHHhcCCCCC----------------chHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 046194 743 ANCRKTELGRKAANMLFEMEPQNA----------------VNYVLLANMYASGGKWEDVAKARKAMKEA 795 (934)
Q Consensus 743 ~~~~~~~~a~~~~~~~~~~~p~~~----------------~~y~~l~~~~~~~g~~~~a~~~~~~m~~~ 795 (934)
. |+++.|...+++++++.|.+. ..+..++.+|...|++++|.+.++...+.
T Consensus 84 ~--~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 84 T--EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp T--TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred c--ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 8 899999999999999888877 88999999999999999999999988754
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.34 E-value=2.8e-06 Score=77.76 Aligned_cols=95 Identities=11% Similarity=-0.006 Sum_probs=79.8
Q ss_pred cccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 046194 698 LEQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANM 775 (934)
Q Consensus 698 ~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~ 775 (934)
...+..+...+.+.|++++|.+.|++. ...| +...|..+...+... |+++.|...++++++++|+++..+..++.+
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 95 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSL--GLYEQALQSYSYGALMDINEPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHH--hhHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 445556677778888888888888776 3444 577888888888888 999999999999999999999999999999
Q ss_pred HHcCCChHHHHHHHHHHHh
Q 046194 776 YASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 776 ~~~~g~~~~a~~~~~~m~~ 794 (934)
|...|++++|.+.++...+
T Consensus 96 ~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 9999999999999887764
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.34 E-value=5.6e-06 Score=82.66 Aligned_cols=186 Identities=8% Similarity=-0.038 Sum_probs=130.9
Q ss_pred HhHHHHHHHHHhchhhHHHHHHHHHHHHHhCCCC--cHhHHHHHHHHHHhcCCHHHHHHHhccCCC--CCcc----cccH
Q 046194 561 HFTFATVLSACASVATLERGMEVHACGVRACLEF--DVVIGSALVDMYSKCGRIDYASRFFDLMPV--RNVY----SWNS 632 (934)
Q Consensus 561 ~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~--~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~----~~~~ 632 (934)
...+......+...|++++|...++.+++..... ....+..+...|.+.|++++|...|+...+ |+.. +|..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 3445566677889999999999999999864322 245677889999999999999999998763 4322 3444
Q ss_pred HHHHHHH------------------cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCC
Q 046194 633 MISGYAR------------------HGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGL 694 (934)
Q Consensus 633 li~~~~~------------------~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~ 694 (934)
+..++.. .|++++|+..|+++.+. .|+....... ....+. +...+..
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a---~~~l~~------~~~~~~~---- 148 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDA---TKRLVF------LKDRLAK---- 148 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHH---HHHHHH------HHHHHHH----
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHH---HHHHHH------HHHHHHH----
Confidence 5555544 57899999999999984 6775432111 111111 1111111
Q ss_pred CCCcccHHHHHHHHhhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCch
Q 046194 695 IPQLEQFSCMVDLLGRAGELDKIEEFINKM-PITPN----SLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVN 768 (934)
Q Consensus 695 ~p~~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 768 (934)
....+...|.+.|++++|...++++ ...|+ ...+..+..++... |+.+.|...++.+....|++..+
T Consensus 149 -----~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~--g~~~~A~~~~~~l~~~~~~~~~~ 220 (225)
T 2yhc_A 149 -----YEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQM--QMNAQAEKVAKIIAANSSNTLEH 220 (225)
T ss_dssp -----HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCCSCCCCC
T ss_pred -----HHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHc--CCcHHHHHHHHHHHhhCCCchhh
Confidence 1234677888999999999998887 33443 24677888888888 99999999999999988887654
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.34 E-value=1.2e-06 Score=86.44 Aligned_cols=156 Identities=10% Similarity=0.027 Sum_probs=114.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHH----------------HHHHHHhhCcHHHHHHHHHHhHHhhCCC
Q 046194 633 MISGYARHGHGDKALTLFSQMKLDGPLPD-HVTFVG----------------VLSACSHAGLVDEGFKHFKSMSQVYGLI 695 (934)
Q Consensus 633 li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~----------------ll~a~~~~g~~~~a~~~~~~m~~~~~~~ 695 (934)
....+...|++++|+..|++..+. .|+ ...+.. +..++...|++++|+..|++..+ +.
T Consensus 10 ~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~ 84 (208)
T 3urz_A 10 KVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ---KA 84 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---HC
Confidence 344566778888888888888773 555 334555 77789999999999999999987 34
Q ss_pred CC-cccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHH
Q 046194 696 PQ-LEQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLL 772 (934)
Q Consensus 696 p~-~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l 772 (934)
|+ ...|..+..+|...|++++|.+.+++. ...| +..+|..+...+...+.++.+.+...++++....|.+ ..+..+
T Consensus 85 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~a~~~~ 163 (208)
T 3urz_A 85 PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQ-YARYRD 163 (208)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHH-HHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchh-HHHHHH
Confidence 55 788999999999999999999999987 5566 4678888888876651123344555666655433322 245667
Q ss_pred HHHHHcCCChHHHHHHHHHHHh
Q 046194 773 ANMYASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 773 ~~~~~~~g~~~~a~~~~~~m~~ 794 (934)
+..+...|++++|...+++..+
T Consensus 164 g~~~~~~~~~~~A~~~~~~al~ 185 (208)
T 3urz_A 164 GLSKLFTTRYEKARNSLQKVIL 185 (208)
T ss_dssp HHHHHHHHTHHHHHHHHHHHTT
T ss_pred HHHHHHccCHHHHHHHHHHHHH
Confidence 8888999999999999988764
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.33 E-value=1.9e-05 Score=82.54 Aligned_cols=159 Identities=9% Similarity=-0.060 Sum_probs=114.9
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCC-CCChh----hHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC----cccHHH
Q 046194 633 MISGYARHGHGDKALTLFSQMKLDGP-LPDHV----TFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ----LEQFSC 703 (934)
Q Consensus 633 li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~y~~ 703 (934)
.+..+...|++++|+.++++..+... .|+.. .+..+...+...|++++|+..|+...+...-.++ ...|+.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 46677788888888888888876321 12211 1223555566777889999988888773112222 225888
Q ss_pred HHHHHhhcCChHHHHHHHHhC-----CC---CCC-HHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCC------Cch
Q 046194 704 MVDLLGRAGELDKIEEFINKM-----PI---TPN-SLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQN------AVN 768 (934)
Q Consensus 704 li~~l~~~g~~~~A~~~~~~m-----~~---~p~-~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~ 768 (934)
+...|...|++++|.+.++++ .. .|. ..++..+...+... |++++|...+++++++.+.. +..
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~--~~y~~A~~~~~~al~~~~~~~~~~~~~~~ 238 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLD--SRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTBCTTHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 888899999999988888776 11 122 33778888888888 99999999999998876543 567
Q ss_pred HHHHHHHHHcCCC-hHHHHHHHHHHH
Q 046194 769 YVLLANMYASGGK-WEDVAKARKAMK 793 (934)
Q Consensus 769 y~~l~~~~~~~g~-~~~a~~~~~~m~ 793 (934)
|..++.+|.+.|+ +++|.+.+++..
T Consensus 239 ~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 239 YYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 9999999999995 699998877664
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.32 E-value=2.5e-06 Score=81.43 Aligned_cols=151 Identities=9% Similarity=0.044 Sum_probs=93.5
Q ss_pred HHHHHHHhcCCHHHHHHHhccCCC---CCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHH--HHhh
Q 046194 601 ALVDMYSKCGRIDYASRFFDLMPV---RNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSA--CSHA 675 (934)
Q Consensus 601 ~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a--~~~~ 675 (934)
.+...+.+.|++++|...|+.... .+...|..+...|...|++++|+..|++..+. .|+.. +..+... +...
T Consensus 11 ~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~-~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 11 KQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNS-YKSLIAKLELHQQ 87 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChH-HHHHHHHHHHHhh
Confidence 345556677777777777777663 24456777777777777777777777776653 34322 2222211 1122
Q ss_pred CcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhhcCChHHHHHHHHhC-CCCCC---HHHHHHHHHHHHhccCCCcHH
Q 046194 676 GLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGRAGELDKIEEFINKM-PITPN---SLIWRTVLGACCRANCRKTEL 750 (934)
Q Consensus 676 g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p~---~~~~~~ll~~~~~~~~~~~~~ 750 (934)
+...+|...|+...+ ..|+ ...+..+..+|.+.|++++|.+.++++ ...|+ ...|..+...+... |+.+.
T Consensus 88 ~~~~~a~~~~~~al~---~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~--g~~~~ 162 (176)
T 2r5s_A 88 AAESPELKRLEQELA---ANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSAL--GQGNA 162 (176)
T ss_dssp HTSCHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHH--CSSCH
T ss_pred cccchHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHh--CCCCc
Confidence 222345666666655 3454 666777777777777777777777766 44443 45677777777777 77777
Q ss_pred HHHHHHHHH
Q 046194 751 GRKAANMLF 759 (934)
Q Consensus 751 a~~~~~~~~ 759 (934)
|...+++++
T Consensus 163 A~~~y~~al 171 (176)
T 2r5s_A 163 IASKYRRQL 171 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777777654
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.32 E-value=2.9e-05 Score=80.52 Aligned_cols=179 Identities=12% Similarity=0.139 Sum_probs=114.2
Q ss_pred CHHHHHHHhccCCC---CCcccccHHHHHH----HHc---CChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHH-
Q 046194 611 RIDYASRFFDLMPV---RNVYSWNSMISGY----ARH---GHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVD- 679 (934)
Q Consensus 611 ~~~~A~~~~~~~~~---~~~~~~~~li~~~----~~~---g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~- 679 (934)
+++++++.++.+.. ++..+|+.--..+ ... +++++++++++++.+.. +-|...|..-.-.+.+.|.++
T Consensus 84 ~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~ 162 (306)
T 3dra_A 84 NLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHND 162 (306)
T ss_dssp CHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTC
T ss_pred cHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccCh
Confidence 55556555555542 2333444433333 333 56777777777777642 223455555555566666666
Q ss_pred -HHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCC------hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCC-cH
Q 046194 680 -EGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGE------LDKIEEFINKM-PITP-NSLIWRTVLGACCRANCRK-TE 749 (934)
Q Consensus 680 -~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~------~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~-~~ 749 (934)
+++++++.+.+. -.-|-..|+.-..++.+.|+ +++++++++++ ...| |...|+.+...+... |+ .+
T Consensus 163 ~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~--~~~~~ 238 (306)
T 3dra_A 163 AKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERF--DRSIT 238 (306)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHT--TCCGG
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhc--CCChH
Confidence 777777777763 22234555555555666565 77788777766 3344 677888877777777 44 44
Q ss_pred HHHHHHHHHHhcC---CCCCchHHHHHHHHHcCCChHHHHHHHHHHHh
Q 046194 750 LGRKAANMLFEME---PQNAVNYVLLANMYASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 750 ~a~~~~~~~~~~~---p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 794 (934)
.....++++.+++ |.++..+..++++|.+.|+.++|.++++.+.+
T Consensus 239 ~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 239 QLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp GGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 4566777777766 77777888888888888888888888888764
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.31 E-value=6.3e-06 Score=86.17 Aligned_cols=162 Identities=9% Similarity=-0.080 Sum_probs=113.2
Q ss_pred ccHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-----hhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC----ccc
Q 046194 630 WNSMISGYARHGHGDKALTLFSQMKLDGPLPDH-----VTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ----LEQ 700 (934)
Q Consensus 630 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~ 700 (934)
+...+..+...|++++|++.+++..+.....+. ..+..+...+...|++++|+..|+...+...-..+ ...
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 344566777788888888888877764321111 11333444566778888888888887653111112 347
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhC----CCCCC-----HHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCC------C
Q 046194 701 FSCMVDLLGRAGELDKIEEFINKM----PITPN-----SLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQ------N 765 (934)
Q Consensus 701 y~~li~~l~~~g~~~~A~~~~~~m----~~~p~-----~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~------~ 765 (934)
|+.+...|...|++++|.+.+++. ...|+ ..++..+...|... |++++|...+++++++.++ -
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~--~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLD--SRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHH--hhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 788888888899999888888765 11222 25788888888888 9999999999998877532 1
Q ss_pred CchHHHHHHHHHcCCChHHH-HHHHHHHH
Q 046194 766 AVNYVLLANMYASGGKWEDV-AKARKAMK 793 (934)
Q Consensus 766 ~~~y~~l~~~~~~~g~~~~a-~~~~~~m~ 793 (934)
+..|..++.+|...|++++| ...+++..
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 55789999999999999999 77566543
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=4.9e-06 Score=96.35 Aligned_cols=144 Identities=15% Similarity=0.037 Sum_probs=87.0
Q ss_pred hhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCC---CCcccccHHHHHHHHcCChHHHHHHHH
Q 046194 575 ATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPV---RNVYSWNSMISGYARHGHGDKALTLFS 651 (934)
Q Consensus 575 ~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~ 651 (934)
|++++|.+.++.+.+.. +.+...+..+...|.+.|++++|.+.|++..+ .+...|..+...|...|++++|++.|+
T Consensus 3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 56677777777666532 12456667777777777777777777776543 234567777777777777777777777
Q ss_pred HHHHCCCCCC-hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhhc---CChHHHHHHHHhC
Q 046194 652 QMKLDGPLPD-HVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGRA---GELDKIEEFINKM 724 (934)
Q Consensus 652 ~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~---g~~~~A~~~~~~m 724 (934)
+..+. .|+ ...+..+..++...|++++|.+.|++..+. .|+ ...+..+..++... |++++|.+.+++.
T Consensus 82 ~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 82 QASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL---LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 77764 344 456666667777777777777777777663 333 56667777777777 7777777777765
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.28 E-value=9.7e-07 Score=91.67 Aligned_cols=191 Identities=9% Similarity=-0.056 Sum_probs=128.7
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHhccCC--CC-CcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHH
Q 046194 595 DVVIGSALVDMYSKCGRIDYASRFFDLMP--VR-NVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPD-HVTFVGVLS 670 (934)
Q Consensus 595 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~ 670 (934)
+...+..+...|.+.|++++|...|+... .| +...|..+..+|...|++++|+..+++..+. .|+ ...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 34455666777778888888888887665 23 5567788888888888888888888888774 555 556777777
Q ss_pred HHHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhccCCCcH
Q 046194 671 ACSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGRAGELDKIEEFINKMPITPNSLIWRTVLGACCRANCRKTE 749 (934)
Q Consensus 671 a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~~ 749 (934)
++...|++++|...|+...+. .|+ ...+...+....+.++...... .......++..+...+ ..+. . |+.+
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l-~~l~-~--~~~~ 152 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYL-TRLI-A--AERE 152 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHH-HHHH-H--HHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHH-HHHH-H--HHHH
Confidence 888899999999988887663 232 1122222222222221111111 2222334444444444 3333 4 8889
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHHcC-CChHHHHHHHHHHHhC
Q 046194 750 LGRKAANMLFEMEPQNAVNYVLLANMYASG-GKWEDVAKARKAMKEA 795 (934)
Q Consensus 750 ~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~-g~~~~a~~~~~~m~~~ 795 (934)
.|...++++++++|++......+..++... +++++|.+++..+.+.
T Consensus 153 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 153 RELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 999999999999999888888888888887 7789999998877653
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.27 E-value=0.00092 Score=74.92 Aligned_cols=81 Identities=9% Similarity=-0.139 Sum_probs=38.7
Q ss_pred CChhHHHHHHhcCCC--CCcccHHHHHHHHHhCCC-hhHHHHHHHHHHHC-CCCC-ChhhHHHHHHHhh----ccCchHH
Q 046194 305 GTIDDSRSVFRFMIG--KDSVSWNTMISGLDQNGC-YEEAIMNFCAMRRD-GLMS-SNFSLISTLSSCA----SLGWIML 375 (934)
Q Consensus 305 g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~-g~~p-~~~t~~~ll~a~~----~~~~~~~ 375 (934)
|.++.+..+|++... |++..|..-+.-..+.+. .+....+|+..... |..| +...|...+.-+. ..++++.
T Consensus 28 ~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~ 107 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEK 107 (493)
T ss_dssp TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHH
T ss_pred CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHH
Confidence 556666666655533 455556555555444442 23444455554432 3222 3334444443332 1244556
Q ss_pred HHHHHHHHhh
Q 046194 376 GQQIHGEGLK 385 (934)
Q Consensus 376 a~~i~~~~~~ 385 (934)
++.+++.+++
T Consensus 108 vR~iy~rAL~ 117 (493)
T 2uy1_A 108 IRNGYMRALQ 117 (493)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 6666666665
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.25 E-value=6.7e-06 Score=72.64 Aligned_cols=114 Identities=17% Similarity=0.209 Sum_probs=79.4
Q ss_pred hhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHH
Q 046194 663 VTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKM-PI-TPNSLIWRTVLGAC 740 (934)
Q Consensus 663 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~ 740 (934)
..+..+...+...|++++|.++|+.+.+. .+.+...+..+...+.+.|++++|..+++++ .. +.+..+|..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 34555555666666677776666666553 1223555666667777777777777777665 22 23566777888888
Q ss_pred HhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCC
Q 046194 741 CRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGG 780 (934)
Q Consensus 741 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g 780 (934)
... |+.+.|...++++++..|+++..+..++.++...|
T Consensus 88 ~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 88 YKQ--GDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHh--cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 888 88999999999999999988888888888776544
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.23 E-value=3.4e-05 Score=76.08 Aligned_cols=168 Identities=10% Similarity=-0.036 Sum_probs=93.4
Q ss_pred HHHHHhhccCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhchh----hHHHHHHHHHHHHH
Q 046194 514 EKIFARMSERRDEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVA----TLERGMEVHACGVR 589 (934)
Q Consensus 514 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~----~~~~a~~i~~~~~~ 589 (934)
.+.|++..+..+..++..+-..|...+++++|+..|++..+.| +...+..+-..+.. + +.++|.+.+....+
T Consensus 6 ~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~ 81 (212)
T 3rjv_A 6 GSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVE 81 (212)
T ss_dssp THHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH
Confidence 3334333333355555555555555555566666555555543 23333334444444 3 55555555555554
Q ss_pred hCCCCcHhHHHHHHHHHHh----cCCHHHHHHHhccCCCCC-----cccccHHHHHHHH----cCChHHHHHHHHHHHHC
Q 046194 590 ACLEFDVVIGSALVDMYSK----CGRIDYASRFFDLMPVRN-----VYSWNSMISGYAR----HGHGDKALTLFSQMKLD 656 (934)
Q Consensus 590 ~~~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~~~~~~-----~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~ 656 (934)
.| ++..+..|..+|.. .+++++|.+.|+...+.+ ..++..|...|.. .+++++|+..|++..+.
T Consensus 82 ~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 158 (212)
T 3rjv_A 82 AG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL 158 (212)
T ss_dssp TT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT
T ss_pred CC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc
Confidence 43 34455556666655 666777777776655432 3566666666666 66777777777777764
Q ss_pred CCCCChhhHHHHHHHHHhh-C-----cHHHHHHHHHHhHH
Q 046194 657 GPLPDHVTFVGVLSACSHA-G-----LVDEGFKHFKSMSQ 690 (934)
Q Consensus 657 g~~p~~~t~~~ll~a~~~~-g-----~~~~a~~~~~~m~~ 690 (934)
.++...+..|...|... | +.++|..+|+...+
T Consensus 159 --~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~ 196 (212)
T 3rjv_A 159 --SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCL 196 (212)
T ss_dssp --SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHH
T ss_pred --CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHH
Confidence 22334455555555432 2 67777777777665
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.23 E-value=6.6e-06 Score=73.33 Aligned_cols=94 Identities=11% Similarity=0.042 Sum_probs=77.9
Q ss_pred ccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 046194 699 EQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMY 776 (934)
Q Consensus 699 ~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~ 776 (934)
..|..+...+.+.|++++|.+.+++. ...| +...|..+..++... |+++.|...++++++++|+++..|..++.+|
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~--~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKL--MSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh--cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 34556677777888888888888776 3344 567888888888888 9999999999999999999999999999999
Q ss_pred HcCCChHHHHHHHHHHHh
Q 046194 777 ASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 777 ~~~g~~~~a~~~~~~m~~ 794 (934)
...|++++|.+.+++..+
T Consensus 83 ~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 83 IAVKEYASALETLDAART 100 (126)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHH
Confidence 999999999998887764
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.21 E-value=9e-06 Score=76.33 Aligned_cols=125 Identities=5% Similarity=-0.052 Sum_probs=89.5
Q ss_pred HHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 046194 665 FVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCR 742 (934)
Q Consensus 665 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~ 742 (934)
+..+...+...|++++|...|+...+. .+.+...+..+..++.+.|++++|.+.+++. ...| +...|..+...+..
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 444555566667777777777666552 1223556666777777777777777777665 3333 46677788888888
Q ss_pred ccCCCcHHHHHHHHHHHhcCCCCCchHHHHHH--HHHcCCChHHHHHHHHHHH
Q 046194 743 ANCRKTELGRKAANMLFEMEPQNAVNYVLLAN--MYASGGKWEDVAKARKAMK 793 (934)
Q Consensus 743 ~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~--~~~~~g~~~~a~~~~~~m~ 793 (934)
. |+.+.|...+++++++.|.++..+..+.. .+...|++++|.+.++...
T Consensus 94 ~--~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 94 L--GKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp T--TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred h--ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 8 99999999999999999998888754444 4888899999988877654
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.21 E-value=6.8e-06 Score=73.74 Aligned_cols=113 Identities=8% Similarity=0.006 Sum_probs=75.4
Q ss_pred hHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCC-CcccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 046194 664 TFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIP-QLEQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGAC 740 (934)
Q Consensus 664 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~ 740 (934)
.+..+...+...|++++|...|+...+ ..| +...+..+..+|...|++++|.+.+++. ...| +...|..+...+
T Consensus 18 ~~~~~~~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 18 MVKNKGNECFQKGDYPQAMKHYTEAIK---RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHHT---TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 344455555555666666666555544 222 3455555666666666666666666654 2233 466777777777
Q ss_pred HhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCC
Q 046194 741 CRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGK 781 (934)
Q Consensus 741 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~ 781 (934)
... |+.+.|...++++++++|.+...+..++.++...|+
T Consensus 95 ~~~--~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 95 EAM--KDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHT--TCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHH--hhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 777 888888889998888999888888888888877654
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.20 E-value=7.4e-06 Score=73.10 Aligned_cols=116 Identities=9% Similarity=-0.034 Sum_probs=83.5
Q ss_pred hhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 046194 663 VTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGAC 740 (934)
Q Consensus 663 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~ 740 (934)
..+..+...+...|++++|...|+...+. .+.+...+..+...+...|++++|.+.+++. ...| +...|..+...+
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 34555555666667777777777766652 1223556666777777777777777777665 2333 466777777888
Q ss_pred HhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCCh
Q 046194 741 CRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKW 782 (934)
Q Consensus 741 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~ 782 (934)
... |+.+.|...+++++++.|+++..+..++.++...|++
T Consensus 91 ~~~--~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 91 SSL--NKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHT--TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHh--CCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 888 8999999999999999999988899999988888775
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.19 E-value=5.4e-06 Score=88.49 Aligned_cols=93 Identities=15% Similarity=-0.011 Sum_probs=79.8
Q ss_pred ccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 046194 699 EQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMY 776 (934)
Q Consensus 699 ~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~ 776 (934)
..|..+..+|.+.|++++|++.+++. .+.| +...|..+..++... |+++.|...++++++++|+++..+..++.++
T Consensus 197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~--g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~ 274 (336)
T 1p5q_A 197 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAV--NDFELARADFQKVLQLYPNNKAAKTQLAVCQ 274 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 57788888888888999988888877 4444 577888888899998 9999999999999999999999999999999
Q ss_pred HcCCChHHH-HHHHHHHH
Q 046194 777 ASGGKWEDV-AKARKAMK 793 (934)
Q Consensus 777 ~~~g~~~~a-~~~~~~m~ 793 (934)
...|++++| .+.++.|.
T Consensus 275 ~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 275 QRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999998 44555553
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.19 E-value=0.0001 Score=76.79 Aligned_cols=158 Identities=8% Similarity=-0.112 Sum_probs=115.8
Q ss_pred HHHHHHhcCCHHHHHHHhccCCCCCc--------c-cccHHHHHHHHcCChHHHHHHHHHHHHCCCC-CCh----hhHHH
Q 046194 602 LVDMYSKCGRIDYASRFFDLMPVRNV--------Y-SWNSMISGYARHGHGDKALTLFSQMKLDGPL-PDH----VTFVG 667 (934)
Q Consensus 602 li~~y~~~g~~~~A~~~~~~~~~~~~--------~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~----~t~~~ 667 (934)
.+..+...|++++|...++....... . .+..+...+...|++++|+..|++..+.... ++. .+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 46678888999999999887653211 1 2334566666778999999999999884322 221 25788
Q ss_pred HHHHHHhhCcHHHHHHHHHHhHHhhC----CCCC-cccHHHHHHHHhhcCChHHHHHHHHhC-------CCCCC-HHHHH
Q 046194 668 VLSACSHAGLVDEGFKHFKSMSQVYG----LIPQ-LEQFSCMVDLLGRAGELDKIEEFINKM-------PITPN-SLIWR 734 (934)
Q Consensus 668 ll~a~~~~g~~~~a~~~~~~m~~~~~----~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m-------~~~p~-~~~~~ 734 (934)
+...|...|++++|..+|+++.+... ..|. ...|..+...|.+.|++++|.+.+++. +..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 88889999999999999999875321 1122 447888999999999999999988876 22233 56788
Q ss_pred HHHHHHHhccCCC-cHHHHHHHHHHHhc
Q 046194 735 TVLGACCRANCRK-TELGRKAANMLFEM 761 (934)
Q Consensus 735 ~ll~~~~~~~~~~-~~~a~~~~~~~~~~ 761 (934)
.+...+... |+ .+.|...+++++++
T Consensus 241 ~lg~~~~~~--g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 241 QRGECLRKL--EYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHT--TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh--CCcHHHHHHHHHHHHHH
Confidence 888888888 85 59999999888765
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.17 E-value=0.00027 Score=73.24 Aligned_cols=160 Identities=12% Similarity=0.084 Sum_probs=122.9
Q ss_pred CCHHHHHHHhccCCC---CCcccccHHHHHHHHcCChH--HHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCc------H
Q 046194 610 GRIDYASRFFDLMPV---RNVYSWNSMISGYARHGHGD--KALTLFSQMKLDGPLPDHVTFVGVLSACSHAGL------V 678 (934)
Q Consensus 610 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~--~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~------~ 678 (934)
+++++++.+++.+.+ +|..+|+--.-.+.+.|.++ ++++.++++.+.. .-|...|..-.....+.|. +
T Consensus 124 ~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 124 FDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp CCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhH
Confidence 678888888888763 46667887777777888888 9999999999864 2345566665556666665 8
Q ss_pred HHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHH-HHHHHHhC-CC----CCCHHHHHHHHHHHHhccCCCcHHHH
Q 046194 679 DEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDK-IEEFINKM-PI----TPNSLIWRTVLGACCRANCRKTELGR 752 (934)
Q Consensus 679 ~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~-A~~~~~~m-~~----~p~~~~~~~ll~~~~~~~~~~~~~a~ 752 (934)
++++++++.+... -+-|...|+.+..++.+.|+..+ +.++.++. .. ..+...+..|...+... |+.++|.
T Consensus 203 ~eEl~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~--~~~~~A~ 278 (306)
T 3dra_A 203 DEELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQ--KKYNESR 278 (306)
T ss_dssp HHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHT--TCHHHHH
T ss_pred HHHHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHcc--CCHHHHH
Confidence 9999999998873 33347788888889999888554 55677776 22 34678899999999888 9999999
Q ss_pred HHHHHHHh-cCCCCCchHHHHHH
Q 046194 753 KAANMLFE-MEPQNAVNYVLLAN 774 (934)
Q Consensus 753 ~~~~~~~~-~~p~~~~~y~~l~~ 774 (934)
.+++.+.+ .+|-....|...++
T Consensus 279 ~~~~~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 279 TVYDLLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp HHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHHHHhccChHHHHHHHHHHh
Confidence 99999996 89988777765544
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.16 E-value=1.2e-05 Score=76.66 Aligned_cols=94 Identities=9% Similarity=0.119 Sum_probs=60.1
Q ss_pred ccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHH-HHhccCCCc--HHHHHHHHHHHhcCCCCCchHHHHH
Q 046194 699 EQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGA-CCRANCRKT--ELGRKAANMLFEMEPQNAVNYVLLA 773 (934)
Q Consensus 699 ~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~-~~~~~~~~~--~~a~~~~~~~~~~~p~~~~~y~~l~ 773 (934)
..|..+..+|...|++++|.+.+++. ...| +...|..+... +... |+. +.|...++++++++|.++..+..++
T Consensus 45 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~--~~~~~~~A~~~~~~al~~~p~~~~~~~~la 122 (177)
T 2e2e_A 45 EQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQA--SQHMTAQTRAMIDKALALDSNEITALMLLA 122 (177)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHT--TTCCCHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 34444444444445555555444443 1222 34455555555 5555 776 7788888888888888877888888
Q ss_pred HHHHcCCChHHHHHHHHHHHh
Q 046194 774 NMYASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 774 ~~~~~~g~~~~a~~~~~~m~~ 794 (934)
.+|...|++++|.+.++...+
T Consensus 123 ~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 123 SDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHh
Confidence 888888888888887777664
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.10 E-value=9e-06 Score=82.20 Aligned_cols=134 Identities=10% Similarity=-0.050 Sum_probs=96.8
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC--cccHHHHHHHHhh
Q 046194 633 MISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ--LEQFSCMVDLLGR 710 (934)
Q Consensus 633 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~y~~li~~l~~ 710 (934)
....+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+...+. . .|. ...+..+..++.+
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~a~~~LG~al~~ 183 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGAAGVAHGVAAAN 183 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHHHHHHHHHHHHH
Confidence 556777888888888888887764 465544444555688889999999988755431 1 111 2356778888999
Q ss_pred cCChHHHHHHHHhC---CCCCC--HHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHH
Q 046194 711 AGELDKIEEFINKM---PITPN--SLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLA 773 (934)
Q Consensus 711 ~g~~~~A~~~~~~m---~~~p~--~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~ 773 (934)
.|++++|++.+++. +..|. ...+..+..+++.. |+.++|...++++...+|+ +..+..|.
T Consensus 184 LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~l--Gr~deA~~~l~~a~a~~P~-~~~~~aL~ 248 (282)
T 4f3v_A 184 LALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQ--GNESAAVALLEWLQTTHPE-PKVAAALK 248 (282)
T ss_dssp TTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence 99999999999877 22254 33666777777788 9999999999999999997 65555443
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.10 E-value=1.5e-05 Score=68.85 Aligned_cols=97 Identities=18% Similarity=0.115 Sum_probs=81.3
Q ss_pred cccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCC--CCchHHHHH
Q 046194 698 LEQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQ--NAVNYVLLA 773 (934)
Q Consensus 698 ~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~y~~l~ 773 (934)
...+..+...+.+.|++++|.+.+++. ...| +..+|..+...+... |+.+.|...+++++++.|. ++..+..++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~--~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~ 83 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNL--ERYEEAVDCYNYVINVIEDEYNKDVWAAKA 83 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSCCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHc--cCHHHHHHHHHHHHHhCcccchHHHHHHHH
Confidence 556677777888888888888888776 3333 567788888888888 9999999999999999999 999999999
Q ss_pred HHHHcC-CChHHHHHHHHHHHhCC
Q 046194 774 NMYASG-GKWEDVAKARKAMKEAE 796 (934)
Q Consensus 774 ~~~~~~-g~~~~a~~~~~~m~~~~ 796 (934)
.+|... |++++|.+.++...+..
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHHhCCHHHHHHHHHHHhhcc
Confidence 999999 99999999988887543
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.07 E-value=4.6e-05 Score=79.51 Aligned_cols=161 Identities=8% Similarity=-0.096 Sum_probs=110.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHhccCCC--CCc-------ccccHHHHHHHHcCChHHHHHHHHHHHHCCCC---CC--hhh
Q 046194 599 GSALVDMYSKCGRIDYASRFFDLMPV--RNV-------YSWNSMISGYARHGHGDKALTLFSQMKLDGPL---PD--HVT 664 (934)
Q Consensus 599 ~~~li~~y~~~g~~~~A~~~~~~~~~--~~~-------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~---p~--~~t 664 (934)
+...+..|...|++++|.+.+....+ +.. ..+..+...+...|++++|+..|++..+.... +. ..+
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 34456677788888888887765432 111 12334555667778889999988888753211 11 236
Q ss_pred HHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC-----cccHHHHHHHHhhcCChHHHHHHHHhC-CC------CCC-HH
Q 046194 665 FVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ-----LEQFSCMVDLLGRAGELDKIEEFINKM-PI------TPN-SL 731 (934)
Q Consensus 665 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~y~~li~~l~~~g~~~~A~~~~~~m-~~------~p~-~~ 731 (934)
+..+...|...|++++|..+|++..+.....|+ ...|..+...|.+.|++++|.+.+++. .+ .+. ..
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~ 237 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 777778888899999999998888743222233 257788888899999999999888775 11 111 56
Q ss_pred HHHHHHHHHHhccCCCcHHH-HHHHHHHHhc
Q 046194 732 IWRTVLGACCRANCRKTELG-RKAANMLFEM 761 (934)
Q Consensus 732 ~~~~ll~~~~~~~~~~~~~a-~~~~~~~~~~ 761 (934)
++..+...+... |+.+.| ...+++++++
T Consensus 238 ~~~~lg~~y~~~--g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 238 LYYQRGECLRKL--EYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHT--TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc--CCcHHHHHHHHHHHHHH
Confidence 777788888888 899998 7778877654
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.07 E-value=1.1e-05 Score=74.42 Aligned_cols=92 Identities=10% Similarity=-0.049 Sum_probs=54.8
Q ss_pred ccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHH
Q 046194 628 YSWNSMISGYARHGHGDKALTLFSQMKLDGPLPD-HVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMV 705 (934)
Q Consensus 628 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li 705 (934)
..|..+...+.+.|++++|+..|++..+. .|+ ...|..+..++...|++++|+..|++..+ +.|+ +..|..+.
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~---l~P~~~~~~~~lg 111 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFA---LGKNDYTPVFHTG 111 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSSSCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHh---hCCCCcHHHHHHH
Confidence 35555666666667777777777766663 343 44555566666666666666666666655 2333 45555555
Q ss_pred HHHhhcCChHHHHHHHHhC
Q 046194 706 DLLGRAGELDKIEEFINKM 724 (934)
Q Consensus 706 ~~l~~~g~~~~A~~~~~~m 724 (934)
.+|.+.|++++|.+.|++.
T Consensus 112 ~~~~~lg~~~eA~~~~~~a 130 (151)
T 3gyz_A 112 QCQLRLKAPLKAKECFELV 130 (151)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHH
Confidence 5555555555555555544
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.05 E-value=4.2e-05 Score=74.49 Aligned_cols=153 Identities=11% Similarity=-0.000 Sum_probs=82.7
Q ss_pred HcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHHHHHHHHhHHhh---CCCCC-cccHHHHHHHHhhcCCh
Q 046194 639 RHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGFKHFKSMSQVY---GLIPQ-LEQFSCMVDLLGRAGEL 714 (934)
Q Consensus 639 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~p~-~~~y~~li~~l~~~g~~ 714 (934)
..|++++|.+.++.+... .......+..+...+...|++++|...+++..+.. +..|. ...+..+...|...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 345555555533333221 01123344445555555666666666555554421 11111 34455566666666666
Q ss_pred HHHHHHHHhC-C---CCC-C----HHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCC--C----CchHHHHHHHHHcC
Q 046194 715 DKIEEFINKM-P---ITP-N----SLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQ--N----AVNYVLLANMYASG 779 (934)
Q Consensus 715 ~~A~~~~~~m-~---~~p-~----~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~--~----~~~y~~l~~~~~~~ 779 (934)
++|.+.+++. . ..| + ..++..+...+... |+++.|...+++++++.+. + ...+..++.+|...
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 160 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHF--GDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQE 160 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHC
Confidence 6666665554 1 111 1 23455666666666 7777777777776655322 1 12357888899999
Q ss_pred CChHHHHHHHHHHHh
Q 046194 780 GKWEDVAKARKAMKE 794 (934)
Q Consensus 780 g~~~~a~~~~~~m~~ 794 (934)
|++++|.+.+++..+
T Consensus 161 g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 161 KNLLEAQQHWLRARD 175 (203)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH
Confidence 999999888776653
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.05 E-value=1.1e-05 Score=71.39 Aligned_cols=94 Identities=14% Similarity=0.029 Sum_probs=81.0
Q ss_pred ccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 046194 699 EQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMY 776 (934)
Q Consensus 699 ~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~ 776 (934)
..+..+...+.+.|++++|...+++. ...| +...|..+...+... |+.+.|+..++++++++|+++..+..++.+|
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~--g~~~~A~~~~~~al~l~P~~~~~~~~la~~~ 95 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAEN--EKDGLAIIALNHARMLDPKDIAVHAALAVSH 95 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 45666778888889999999888887 4455 577888888888888 9999999999999999999999999999999
Q ss_pred HcCCChHHHHHHHHHHHh
Q 046194 777 ASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 777 ~~~g~~~~a~~~~~~m~~ 794 (934)
...|++++|.+.++...+
T Consensus 96 ~~~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 96 TNEHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHHHC
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 999999999999888764
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.05 E-value=2e-05 Score=75.14 Aligned_cols=130 Identities=6% Similarity=0.054 Sum_probs=101.6
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCC-CcccHHHHHHH-HhhcCCh
Q 046194 637 YARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIP-QLEQFSCMVDL-LGRAGEL 714 (934)
Q Consensus 637 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~li~~-l~~~g~~ 714 (934)
+...|++++|+..|++..+.. +.+...+..+...+...|++++|...|+...+. .| +...+..+..+ +.+.|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~la~~l~~~~~~~ 95 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL---RGENAELYAALATVLYYQASQH 95 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HCSCHHHHHHHHHHHHHHTTTC
T ss_pred hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhcCCc
Confidence 345788899999999988753 234567888888899999999999999998873 34 46678888888 7789998
Q ss_pred --HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHH
Q 046194 715 --DKIEEFINKM-PITP-NSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLL 772 (934)
Q Consensus 715 --~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l 772 (934)
++|.+.+++. ...| +...|..+...+... |+.+.|...+++++++.|+++.....+
T Consensus 96 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~~ 155 (177)
T 2e2e_A 96 MTAQTRAMIDKALALDSNEITALMLLASDAFMQ--ANYAQAIELWQKVMDLNSPRINRTQLV 155 (177)
T ss_dssp CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCCTTSCHHHHH
T ss_pred chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc--ccHHHHHHHHHHHHhhCCCCccHHHHH
Confidence 9999999887 4445 467888888888888 999999999999999999987655443
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.05 E-value=3e-05 Score=67.50 Aligned_cols=91 Identities=10% Similarity=0.134 Sum_probs=52.2
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHc
Q 046194 701 FSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYAS 778 (934)
Q Consensus 701 y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~ 778 (934)
+..++..+...|++++|.+.+++. ...| +...|..+...+... |+.+.|...++++++..|.++..+..++.+|..
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKK--GDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 444445555555555555555544 2222 344555555555555 666666666666666666666666666666666
Q ss_pred CCChHHHHHHHHHHH
Q 046194 779 GGKWEDVAKARKAMK 793 (934)
Q Consensus 779 ~g~~~~a~~~~~~m~ 793 (934)
.|++++|.+.++...
T Consensus 85 ~~~~~~A~~~~~~~~ 99 (118)
T 1elw_A 85 LNRFEEAKRTYEEGL 99 (118)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHH
Confidence 666666666655554
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.05 E-value=2.3e-06 Score=83.52 Aligned_cols=170 Identities=7% Similarity=-0.071 Sum_probs=100.3
Q ss_pred HHHHHHHhcCCHHHHHHHhccCCCC---CcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCc
Q 046194 601 ALVDMYSKCGRIDYASRFFDLMPVR---NVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGL 677 (934)
Q Consensus 601 ~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 677 (934)
..+......|+++.|.+.++..... ....|..+...+...|++++|+..|++..+. .|+...+... .
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~--------~ 78 (198)
T 2fbn_A 9 HHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEWDDQ--------I 78 (198)
T ss_dssp -------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTCCCH--------H
T ss_pred chhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--Hhcccccchh--------h
Confidence 3444455667777777777654321 3335666677777777777787777777763 3332111000 0
Q ss_pred HHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCcHHHHHHH
Q 046194 678 VDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCRANCRKTELGRKAA 755 (934)
Q Consensus 678 ~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~ 755 (934)
.+.-. .. .....|..+..+|.+.|++++|.+.+++. ...| +...|..+..++... |+++.|...+
T Consensus 79 ~~~~~---~~--------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~--~~~~~A~~~~ 145 (198)
T 2fbn_A 79 LLDKK---KN--------IEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYF--GFLEEAKENL 145 (198)
T ss_dssp HHHHH---HH--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH--TCHHHHHHHH
T ss_pred HHHHH---HH--------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc--ccHHHHHHHH
Confidence 00000 00 01245666777777888888888877766 3344 566788888888888 9999999999
Q ss_pred HHHHhcCCCCCchHHHHHHHHHcCCChHHHH-HHHHHHH
Q 046194 756 NMLFEMEPQNAVNYVLLANMYASGGKWEDVA-KARKAMK 793 (934)
Q Consensus 756 ~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~-~~~~~m~ 793 (934)
+++++++|+++..+..++.++...|+.+++. ..++.|.
T Consensus 146 ~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 146 YKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMF 184 (198)
T ss_dssp HHHHHHSTTCHHHHHHHHHHHHHHHHHHC----------
T ss_pred HHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999888888776 4444443
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.03 E-value=3.7e-05 Score=68.80 Aligned_cols=95 Identities=8% Similarity=0.078 Sum_probs=86.3
Q ss_pred cccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 046194 698 LEQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANM 775 (934)
Q Consensus 698 ~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~ 775 (934)
...|..+...+.+.|++++|.+.+++. ...| +..+|..+...+... |+.+.|...+++++++.|.++..+..++.+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~--~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKL--LEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 667888899999999999999999987 5555 677888888888888 999999999999999999999999999999
Q ss_pred HHcCCChHHHHHHHHHHHh
Q 046194 776 YASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 776 ~~~~g~~~~a~~~~~~m~~ 794 (934)
|...|++++|.+.+++..+
T Consensus 94 ~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 9999999999999988765
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.02 E-value=1.2e-05 Score=74.15 Aligned_cols=108 Identities=7% Similarity=-0.044 Sum_probs=77.3
Q ss_pred CCC-hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCC-CcccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHH
Q 046194 659 LPD-HVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIP-QLEQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWR 734 (934)
Q Consensus 659 ~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~ 734 (934)
.|+ ...+..+...+...|++++|...|+...+. .| +...|..+..+|.+.|++++|.+.+++. ...| ++..|.
T Consensus 17 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 93 (148)
T 2vgx_A 17 SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL---DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPF 93 (148)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHH
T ss_pred CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc---CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHH
Confidence 444 334555666677778888888877777652 34 3666777777788888888888877776 3344 456777
Q ss_pred HHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHH
Q 046194 735 TVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVL 771 (934)
Q Consensus 735 ~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~ 771 (934)
.+..++... |+.+.|...+++++++.|+++.....
T Consensus 94 ~lg~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~ 128 (148)
T 2vgx_A 94 HAAECLLQX--GELAEAESGLFLAQELIANXPEFXEL 128 (148)
T ss_dssp HHHHHHHHT--TCHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred HHHHHHHHc--CCHHHHHHHHHHHHHHCcCCCcchHH
Confidence 777788878 89999999999999999888766433
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=97.99 E-value=9.4e-06 Score=82.09 Aligned_cols=181 Identities=8% Similarity=-0.063 Sum_probs=134.5
Q ss_pred hcCCHHHHHHHhccCCC--C-CcccccHH-------HHHHHHcCChHHHHHHHHHHHHCCCCCChh--------------
Q 046194 608 KCGRIDYASRFFDLMPV--R-NVYSWNSM-------ISGYARHGHGDKALTLFSQMKLDGPLPDHV-------------- 663 (934)
Q Consensus 608 ~~g~~~~A~~~~~~~~~--~-~~~~~~~l-------i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-------------- 663 (934)
..++.+.|.+.|.+... | ....|+.+ ...+...++..+++..+++-.+ +.|+..
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 46788888888887763 3 23477776 4556666666666666665544 344321
Q ss_pred --------hHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhCCCCCCH----H
Q 046194 664 --------TFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKMPITPNS----L 731 (934)
Q Consensus 664 --------t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~~~p~~----~ 731 (934)
....+...+...|++++|.+.|+.+.. ..|+......+...+.+.|++++|+..|+.....|+. .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~---~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV---AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC---TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 123355678899999999999988865 2354336666777999999999999999977444433 3
Q ss_pred HHHHHHHHHHhccCCCcHHHHHHHHHHHhcC--CC-CCchHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 046194 732 IWRTVLGACCRANCRKTELGRKAANMLFEME--PQ-NAVNYVLLANMYASGGKWEDVAKARKAMKEA 795 (934)
Q Consensus 732 ~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~--p~-~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~ 795 (934)
++..|..++... |+.++|+..++++.... |. .+.....++.++.+.|+.++|...++.+...
T Consensus 173 a~~~LG~al~~L--G~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 173 AGVAHGVAAANL--ALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHT--TCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 677888888888 99999999999998654 54 4457889999999999999999999999863
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=97.98 E-value=3.2e-05 Score=69.84 Aligned_cols=95 Identities=6% Similarity=0.043 Sum_probs=76.1
Q ss_pred cccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 046194 698 LEQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANM 775 (934)
Q Consensus 698 ~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~ 775 (934)
...|..+...+.+.|++++|.+.+++. ...| +...|..+...+... |+++.|...++++++++|+++..+..++.+
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~--~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKM--QQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 556666777777777777777777665 3334 466777888888888 899999999999999999999999999999
Q ss_pred HHcCCChHHHHHHHHHHHh
Q 046194 776 YASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 776 ~~~~g~~~~a~~~~~~m~~ 794 (934)
|...|++++|.+.++...+
T Consensus 87 ~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 9999999999998887765
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.98 E-value=5.5e-05 Score=69.14 Aligned_cols=92 Identities=8% Similarity=0.045 Sum_probs=46.8
Q ss_pred cHHHHHHHHhhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHH
Q 046194 700 QFSCMVDLLGRAGELDKIEEFINKM-PITPN----SLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLAN 774 (934)
Q Consensus 700 ~y~~li~~l~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~ 774 (934)
.+..+...+.+.|++++|.+.+++. ...|+ ...|..+...+... |+++.|...++++++++|+++..+..++.
T Consensus 30 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 107 (148)
T 2dba_A 30 QLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKL--EDYDKAETEASKAIEKDGGDVKALYRRSQ 107 (148)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHH--ccHHHHHHHHHHHHhhCccCHHHHHHHHH
Confidence 3334444444444444444444443 33343 33444444444444 55555555555555555555555555555
Q ss_pred HHHcCCChHHHHHHHHHHH
Q 046194 775 MYASGGKWEDVAKARKAMK 793 (934)
Q Consensus 775 ~~~~~g~~~~a~~~~~~m~ 793 (934)
+|...|++++|.+.+++..
T Consensus 108 ~~~~~~~~~~A~~~~~~al 126 (148)
T 2dba_A 108 ALEKLGRLDQAVLDLQRCV 126 (148)
T ss_dssp HHHHHTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHH
Confidence 5555555555555555444
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=97.98 E-value=6.4e-05 Score=66.12 Aligned_cols=95 Identities=18% Similarity=0.291 Sum_probs=85.5
Q ss_pred cccHHHHHHHHhhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 046194 698 LEQFSCMVDLLGRAGELDKIEEFINKM-PIT-PNSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANM 775 (934)
Q Consensus 698 ~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~ 775 (934)
...|..+...+.+.|++++|.+.++++ ... .+..+|..+...+... |+.+.|...++++.+..|+++..+..++.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQ--GDYDEAIEYYQKALELDPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 467788899999999999999999987 333 4577888999999988 999999999999999999999999999999
Q ss_pred HHcCCChHHHHHHHHHHHh
Q 046194 776 YASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 776 ~~~~g~~~~a~~~~~~m~~ 794 (934)
|...|++++|.+.++.+.+
T Consensus 87 ~~~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHH
Confidence 9999999999999988875
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.97 E-value=5.4e-05 Score=65.86 Aligned_cols=108 Identities=14% Similarity=0.047 Sum_probs=64.3
Q ss_pred HHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 046194 665 FVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCR 742 (934)
Q Consensus 665 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~ 742 (934)
+..+...+...|++++|...|+...+. .+.+...+..+..++.+.|++++|.+.+++. ...| +...|..+...+..
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 344444455555555555555555442 1123445555555555666666666655554 2233 35566667777777
Q ss_pred ccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 046194 743 ANCRKTELGRKAANMLFEMEPQNAVNYVLLANMY 776 (934)
Q Consensus 743 ~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~ 776 (934)
. |+.+.|...++++++++|+++..+..++.+.
T Consensus 85 ~--~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 85 L--NRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp T--TCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred H--hhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 7 7888888888888888887777666665553
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.96 E-value=3.1e-05 Score=72.54 Aligned_cols=85 Identities=9% Similarity=0.147 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHHhCCCcCCCceeEEEeC
Q 046194 730 SLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMKEAEVKKEAGCSWVTMK 809 (934)
Q Consensus 730 ~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ 809 (934)
..+|..+..++... |+++.|...++++++++|.++..|..++.+|...|++++|.+.++...+
T Consensus 63 ~~~~~nla~~~~~~--~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~--------------- 125 (162)
T 3rkv_A 63 IPLYANMSQCYLNI--GDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLR--------------- 125 (162)
T ss_dssp HHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHHHhc--CcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh---------------
Confidence 45777888888888 9999999999999999999999999999999999999999999888764
Q ss_pred CEEEEEEcCCCCCCChH-HHHHHHHHHHHHHHHC
Q 046194 810 DGVHVFVAGDESHPEKD-LIYEKLKELNQKMRDA 842 (934)
Q Consensus 810 ~~~~~f~~~~~~~~~~~-~~~~~l~~l~~~m~~~ 842 (934)
.+|... .+...+..+...+++.
T Consensus 126 -----------l~p~~~~~~~~~l~~~~~~~~~~ 148 (162)
T 3rkv_A 126 -----------NHPAAASVVAREMKIVTERRAEK 148 (162)
T ss_dssp -----------HCGGGHHHHHHHHHHHHHHHHHH
T ss_pred -----------cCCCCHHHHHHHHHHHHHHHHHH
Confidence 245555 6677777777777643
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.95 E-value=2.8e-05 Score=87.16 Aligned_cols=113 Identities=6% Similarity=-0.020 Sum_probs=75.9
Q ss_pred HhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCcH
Q 046194 673 SHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCRANCRKTE 749 (934)
Q Consensus 673 ~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~ 749 (934)
...|++++|.+.|++..+. .|+ ...|..+..+|.+.|++++|.+.+++. ...| +...|..+..++... |+.+
T Consensus 17 ~~~g~~~~A~~~~~~Al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~--g~~~ 91 (477)
T 1wao_1 17 FKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMAL--GKFR 91 (477)
T ss_dssp TTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH--TCHH
T ss_pred HHhCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--CCHH
Confidence 3445555555555554441 232 445555555555556666666555554 3344 466788888888888 9999
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHH--HHcCCChHHHHHHHH
Q 046194 750 LGRKAANMLFEMEPQNAVNYVLLANM--YASGGKWEDVAKARK 790 (934)
Q Consensus 750 ~a~~~~~~~~~~~p~~~~~y~~l~~~--~~~~g~~~~a~~~~~ 790 (934)
+|...++++++++|+++..+..++.+ +.+.|++++|.+.++
T Consensus 92 eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999999999999999988 888999999988866
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=97.93 E-value=3.5e-05 Score=72.33 Aligned_cols=93 Identities=13% Similarity=0.129 Sum_probs=52.5
Q ss_pred cHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 046194 700 QFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYA 777 (934)
Q Consensus 700 ~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~ 777 (934)
.|..+...+.+.|++++|.+.|++. ...| +...|..+...+... |+++.|...++++++++|+++..|..++.+|.
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSAS--GQHEKAAEDAELATVVDPKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHc--cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3444444555555555555555544 2223 344555555555555 66666666666666666666666666666666
Q ss_pred cCCChHHHHHHHHHHHh
Q 046194 778 SGGKWEDVAKARKAMKE 794 (934)
Q Consensus 778 ~~g~~~~a~~~~~~m~~ 794 (934)
..|++++|.+.+++..+
T Consensus 91 ~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHH
Confidence 66666666666555543
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=97.93 E-value=2.9e-05 Score=75.74 Aligned_cols=152 Identities=13% Similarity=0.040 Sum_probs=80.4
Q ss_pred cCCHHHHHH---HhccCCCCCcccccHHHHHHHHcCChHHHHHHHHHHHHC----CCCCC-hhhHHHHHHHHHhhCcHHH
Q 046194 609 CGRIDYASR---FFDLMPVRNVYSWNSMISGYARHGHGDKALTLFSQMKLD----GPLPD-HVTFVGVLSACSHAGLVDE 680 (934)
Q Consensus 609 ~g~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~ 680 (934)
.|++++|.+ .+..-+.....++..+...|...|++++|+..|++..+. +..|. ...+..+...+...|++++
T Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 84 (203)
T 3gw4_A 5 AHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDA 84 (203)
T ss_dssp --CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred cccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence 455555555 333322223335555555566666666666666655441 11111 2345555556666677777
Q ss_pred HHHHHHHhHHhhCCCC-C----cccHHHHHHHHhhcCChHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhccCCC
Q 046194 681 GFKHFKSMSQVYGLIP-Q----LEQFSCMVDLLGRAGELDKIEEFINKM----PITPN----SLIWRTVLGACCRANCRK 747 (934)
Q Consensus 681 a~~~~~~m~~~~~~~p-~----~~~y~~li~~l~~~g~~~~A~~~~~~m----~~~p~----~~~~~~ll~~~~~~~~~~ 747 (934)
|...+++..+...-.+ + ...+..+...+...|++++|.+.+++. ...++ ..++..+...+... |+
T Consensus 85 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~--g~ 162 (203)
T 3gw4_A 85 ARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQE--KN 162 (203)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TC
T ss_pred HHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHC--cC
Confidence 7776666554321122 1 234556666677777777776666654 11111 22345566666666 77
Q ss_pred cHHHHHHHHHHHhcC
Q 046194 748 TELGRKAANMLFEME 762 (934)
Q Consensus 748 ~~~a~~~~~~~~~~~ 762 (934)
.+.|...+++++++.
T Consensus 163 ~~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 163 LLEAQQHWLRARDIF 177 (203)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 777777777766553
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=97.93 E-value=7.4e-05 Score=66.37 Aligned_cols=95 Identities=13% Similarity=0.113 Sum_probs=85.3
Q ss_pred cccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 046194 698 LEQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANM 775 (934)
Q Consensus 698 ~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~ 775 (934)
...+..+...+...|++++|.+.+++. ...| +...|..+...+... |+.+.|...++++++..|+++..+..++.+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKL--GNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh--hchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 566778889999999999999999987 3344 677888888888888 999999999999999999999999999999
Q ss_pred HHcCCChHHHHHHHHHHHh
Q 046194 776 YASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 776 ~~~~g~~~~a~~~~~~m~~ 794 (934)
|...|++++|.+.++...+
T Consensus 90 ~~~~~~~~~A~~~~~~~~~ 108 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALE 108 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHh
Confidence 9999999999999988765
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.92 E-value=2.4e-05 Score=69.75 Aligned_cols=93 Identities=8% Similarity=0.024 Sum_probs=73.9
Q ss_pred cHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCc-------hHH
Q 046194 700 QFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAV-------NYV 770 (934)
Q Consensus 700 ~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~-------~y~ 770 (934)
.+..++..+.+.|++++|++.|++. .+.| +...|..+..++... |+++.|...++++++++|+++. .|.
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~--~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEE--KKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHh--hhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 3556677777778888888777776 4445 466788888888888 9999999999999999887754 577
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHh
Q 046194 771 LLANMYASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 771 ~l~~~~~~~g~~~~a~~~~~~m~~ 794 (934)
.++++|...|++++|.+.+++..+
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Confidence 788999999999999999887654
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.91 E-value=8e-05 Score=68.03 Aligned_cols=109 Identities=12% Similarity=-0.018 Sum_probs=67.4
Q ss_pred hHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC----cccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHH
Q 046194 664 TFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ----LEQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVL 737 (934)
Q Consensus 664 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll 737 (934)
.+..+...+...|++++|.+.|+...+ ..|+ ...|..+..+|.+.|++++|.+.+++. ...| +...|..+.
T Consensus 30 ~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 30 QLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 344444445555555555555555543 2343 345555566666666666666666554 2333 456677777
Q ss_pred HHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 046194 738 GACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYA 777 (934)
Q Consensus 738 ~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~ 777 (934)
..+... |+.+.|...++++++++|+++..+..+..+..
T Consensus 107 ~~~~~~--~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 107 QALEKL--GRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHH--TCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHHHHc--CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 777777 88888888888888888888776666665543
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.91 E-value=7.4e-06 Score=74.60 Aligned_cols=105 Identities=10% Similarity=0.028 Sum_probs=68.7
Q ss_pred HHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhCCCCC-CHHHHHHHHHHHHhc
Q 046194 665 FVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKMPITP-NSLIWRTVLGACCRA 743 (934)
Q Consensus 665 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~~~p-~~~~~~~ll~~~~~~ 743 (934)
+......+.+.|++++|+..|++..+. .|+...- +.....| +...|..+..++...
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l---~p~~~~~--------------------~a~~~~~~~a~a~~n~g~al~~L 70 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEI---SHTMPPE--------------------EAFDHAGFDAFCHAGLAEALAGL 70 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH---HTTSCTT--------------------SCCCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhh---CCCCcch--------------------hhhhhccchHHHHHHHHHHHHHC
Confidence 444555566677777777777776652 2331000 0000000 133677777777777
Q ss_pred cCCCcHHHHHHHHHHHhc-------CCCCCchH----HHHHHHHHcCCChHHHHHHHHHHHh
Q 046194 744 NCRKTELGRKAANMLFEM-------EPQNAVNY----VLLANMYASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 744 ~~~~~~~a~~~~~~~~~~-------~p~~~~~y----~~l~~~~~~~g~~~~a~~~~~~m~~ 794 (934)
|++++|...+++++++ +|+++..| ...+.+|...|++++|.+.+++..+
T Consensus 71 --gr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 71 --RSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp --TCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --CCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 7888888888888877 88888888 8888888888888888888777654
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=97.86 E-value=7.6e-05 Score=69.96 Aligned_cols=107 Identities=12% Similarity=0.040 Sum_probs=79.5
Q ss_pred hhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCC-CcccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 046194 663 VTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIP-QLEQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGA 739 (934)
Q Consensus 663 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~ 739 (934)
..+..+...+...|++++|+..|+...+. .| +...|..+..+|.+.|++++|++.+++. .+.| +...|..+...
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSI---APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 44555666677777777777777777652 34 3666777777777788888887777766 3444 46788888888
Q ss_pred HHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHH
Q 046194 740 CCRANCRKTELGRKAANMLFEMEPQNAVNYVLLAN 774 (934)
Q Consensus 740 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~ 774 (934)
+... |+++.|...++++++++|+++..+...+-
T Consensus 89 ~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~~~l 121 (164)
T 3sz7_A 89 RFDM--ADYKGAKEAYEKGIEAEGNGGSDAMKRGL 121 (164)
T ss_dssp HHHT--TCHHHHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred HHHc--cCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 8888 99999999999999999999886655443
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.86 E-value=3.5e-05 Score=86.37 Aligned_cols=87 Identities=9% Similarity=0.019 Sum_probs=44.8
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhh
Q 046194 633 MISGYARHGHGDKALTLFSQMKLDGPLPD-HVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGR 710 (934)
Q Consensus 633 li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~ 710 (934)
+...+.+.|++++|++.|++..+. .|+ ...+..+..++.+.|++++|++.+++..+ +.|+ ...|..+..+|.+
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---l~p~~~~~~~~lg~~~~~ 86 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIE---LDKKYIKGYYRRAASNMA 86 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---SCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHH
Confidence 333444455555555555555552 333 34455555555555555555555555544 2233 4455555555555
Q ss_pred cCChHHHHHHHHhC
Q 046194 711 AGELDKIEEFINKM 724 (934)
Q Consensus 711 ~g~~~~A~~~~~~m 724 (934)
.|++++|.+.+++.
T Consensus 87 ~g~~~eA~~~~~~a 100 (477)
T 1wao_1 87 LGKFRAALRDYETV 100 (477)
T ss_dssp HTCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHH
Confidence 55555555555544
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=97.85 E-value=9.6e-05 Score=69.10 Aligned_cols=127 Identities=6% Similarity=-0.028 Sum_probs=74.4
Q ss_pred cccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHH
Q 046194 629 SWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLL 708 (934)
Q Consensus 629 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l 708 (934)
.|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|...|+...+. .+.+...|..+..++
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHH
Confidence 34455566666677777777777666632 223455566666666777777777777776653 122355666677777
Q ss_pred hhcCChHHHHHHHHhC-CCCC-CHHHHH--HHHHHHHhccCCCcHHHHHHHHHHHh
Q 046194 709 GRAGELDKIEEFINKM-PITP-NSLIWR--TVLGACCRANCRKTELGRKAANMLFE 760 (934)
Q Consensus 709 ~~~g~~~~A~~~~~~m-~~~p-~~~~~~--~ll~~~~~~~~~~~~~a~~~~~~~~~ 760 (934)
.+.|++++|.+.+++. ...| +...+. .+...+... |+.+.|...+++..+
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~--~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQ--KAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH--HHHHHHHHcccchHH
Confidence 7777777777777665 2233 333342 222234445 677777766665543
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=97.84 E-value=0.00054 Score=71.66 Aligned_cols=184 Identities=13% Similarity=0.073 Sum_probs=112.2
Q ss_pred HHhcC-CHHHHHHHhccCCC---CCcccccHHHHHHHHc-C-ChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHH
Q 046194 606 YSKCG-RIDYASRFFDLMPV---RNVYSWNSMISGYARH-G-HGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVD 679 (934)
Q Consensus 606 y~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~-g-~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 679 (934)
+...| .++++++.++.+.. ++..+|+.-...+.+. + ++++++++++++.+.. .-|...|..-.-...+.|.++
T Consensus 98 L~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~ 176 (349)
T 3q7a_A 98 LTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLG 176 (349)
T ss_dssp HHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTT
T ss_pred HHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccc
Confidence 33444 36666666665543 3344565555555554 5 6777777777777642 223445554444444444444
Q ss_pred --------HHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCC-------hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 046194 680 --------EGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGE-------LDKIEEFINKM-PITP-NSLIWRTVLGACCR 742 (934)
Q Consensus 680 --------~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~-------~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~ 742 (934)
+++++++++.+. -.-|...|+....++.+.|+ +++++++++++ ...| |...|+.+-+.+..
T Consensus 177 ~~~~~~~~eELe~~~k~I~~--dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~ 254 (349)
T 3q7a_A 177 RISEAQWGSELDWCNEMLRV--DGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKH 254 (349)
T ss_dssp CCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 778888877763 22346667777777777765 67888888776 3444 67788877777776
Q ss_pred ccCCCc--------------------HHHHHHHHHHHhcC------CCCCchHHHHHHHHHcCCChHHHHHHHHHHHh
Q 046194 743 ANCRKT--------------------ELGRKAANMLFEME------PQNAVNYVLLANMYASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 743 ~~~~~~--------------------~~a~~~~~~~~~~~------p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 794 (934)
. |+. .........+.... +..+-....|+++|...|+.++|.++++.+.+
T Consensus 255 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 255 F--SLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp T--TCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred c--CCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 6 432 22222222222222 35556678999999999999999999998864
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=97.84 E-value=0.0014 Score=68.30 Aligned_cols=191 Identities=10% Similarity=0.003 Sum_probs=118.8
Q ss_pred HHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcC--CHHHHHHHhccCCC---CCcccccHHHHHHHHcCC-hHHHHHHH
Q 046194 577 LERGMEVHACGVRACLEFDVVIGSALVDMYSKCG--RIDYASRFFDLMPV---RNVYSWNSMISGYARHGH-GDKALTLF 650 (934)
Q Consensus 577 ~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g--~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~-~~~A~~l~ 650 (934)
++++..+++.++.... -+..+++.-.-.+.+.| .++++...++.+.+ +|..+|+--.-.+...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~P-Kny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNP-KSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 4566666666665432 25555555555555666 37788888777763 455677776666667777 47888888
Q ss_pred HHHHHCCCCCChhhHHHHHHHHHhh--------------CcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhhc----
Q 046194 651 SQMKLDGPLPDHVTFVGVLSACSHA--------------GLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGRA---- 711 (934)
Q Consensus 651 ~~m~~~g~~p~~~t~~~ll~a~~~~--------------g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~---- 711 (934)
+++.+.. .-|...|+.....+.+. +.++++++++..... ..|+ ...|+.+-..+.+.
T Consensus 169 ~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~---~~P~d~SaW~Y~r~ll~~~~~~~ 244 (331)
T 3dss_A 169 DSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFF---TDPNDQSAWFYHRWLLGAGSGRC 244 (331)
T ss_dssp HHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHSSSCGG
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhccCcc
Confidence 8888753 22344555554444443 457778888777765 3344 55666555555554
Q ss_pred -------CChHHHHHHHHhC-CCCCCHHHHHHHHHHHH-----hccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 046194 712 -------GELDKIEEFINKM-PITPNSLIWRTVLGACC-----RANCRKTELGRKAANMLFEMEPQNAVNYVLLANM 775 (934)
Q Consensus 712 -------g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~-----~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~ 775 (934)
+.++++++.++++ ...||. .|..+..+.. .. +..++....+.++.+++|-..+.|..+..-
T Consensus 245 ~~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~--~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~ 318 (331)
T 3dss_A 245 ELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPL--LYEKETLQYFSTLKAVDPMRAAYLDDLRSK 318 (331)
T ss_dssp GCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTT--TTHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhccc--ccHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence 4577788877777 556654 4543222221 23 666777778888888888877777666544
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.82 E-value=7.9e-05 Score=66.13 Aligned_cols=106 Identities=9% Similarity=-0.059 Sum_probs=60.0
Q ss_pred HHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 046194 665 FVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACC 741 (934)
Q Consensus 665 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~ 741 (934)
+..+...+...|++++|+..|++..+. .|+ ...|..+..+|.+.|++++|.+.+++. ...| +...|..+..++.
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKR---APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 334444455555555555555555442 222 445555555555566666665555554 2333 3456666666666
Q ss_pred hccCCCcHHHHHHHHHHHhcC------CCCCchHHHHHHH
Q 046194 742 RANCRKTELGRKAANMLFEME------PQNAVNYVLLANM 775 (934)
Q Consensus 742 ~~~~~~~~~a~~~~~~~~~~~------p~~~~~y~~l~~~ 775 (934)
.. |+.+.|...++++++++ |.++.....+..+
T Consensus 84 ~~--~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~ 121 (126)
T 3upv_A 84 AV--KEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 121 (126)
T ss_dssp HT--TCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred HH--hCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHH
Confidence 66 77777777777777777 6665555555444
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=97.82 E-value=5e-05 Score=69.24 Aligned_cols=103 Identities=8% Similarity=-0.052 Sum_probs=69.8
Q ss_pred HHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCC-CcccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 046194 665 FVGVLSACSHAGLVDEGFKHFKSMSQVYGLIP-QLEQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACC 741 (934)
Q Consensus 665 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~ 741 (934)
+..+...+...|++++|...|+..... .| +...|..+..+|.+.|++++|.+.+++. ...| ++..|..+..++.
T Consensus 21 ~~~~a~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 21 LYALGFNQYQAGKWDDAQKIFQALCML---DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 444455566677777777777766652 33 3556666677777777777777777665 3333 3456667777777
Q ss_pred hccCCCcHHHHHHHHHHHhcCCCCCchHHHH
Q 046194 742 RANCRKTELGRKAANMLFEMEPQNAVNYVLL 772 (934)
Q Consensus 742 ~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l 772 (934)
.. |+.+.|...+++++++.|+++......
T Consensus 98 ~~--g~~~~A~~~~~~al~~~p~~~~~~~~~ 126 (142)
T 2xcb_A 98 QL--GDLDGAESGFYSARALAAAQPAHEALA 126 (142)
T ss_dssp HT--TCHHHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred Hc--CCHHHHHHHHHHHHHhCCCCcchHHHH
Confidence 77 888888888888888888887765554
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.81 E-value=5.3e-05 Score=67.47 Aligned_cols=91 Identities=8% Similarity=0.022 Sum_probs=55.0
Q ss_pred cccHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC--------cc
Q 046194 629 SWNSMISGYARHGHGDKALTLFSQMKLDGPLPD-HVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ--------LE 699 (934)
Q Consensus 629 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--------~~ 699 (934)
+|..+...+.+.|++++|+..|++..+. .|+ ...|..+..+|...|++++|++.|+...+. .|+ ..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~~a~ 84 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEV---GRETRADYKLIAK 84 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHh---CcccchhhHHHHH
Confidence 3445666667777777777777777763 454 455666666777777777777777766552 122 12
Q ss_pred cHHHHHHHHhhcCChHHHHHHHHhC
Q 046194 700 QFSCMVDLLGRAGELDKIEEFINKM 724 (934)
Q Consensus 700 ~y~~li~~l~~~g~~~~A~~~~~~m 724 (934)
.|..+..++...|++++|++.+++.
T Consensus 85 ~~~~lg~~~~~~~~~~~A~~~~~ka 109 (127)
T 4gcn_A 85 AMSRAGNAFQKQNDLSLAVQWFHRS 109 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444555555555566665555543
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.80 E-value=2e-05 Score=76.81 Aligned_cols=93 Identities=8% Similarity=-0.030 Sum_probs=73.1
Q ss_pred cHHHHHHHHhhcCChHHHHHHHHhC-CC---CCC--------------HHHHHHHHHHHHhccCCCcHHHHHHHHHHHhc
Q 046194 700 QFSCMVDLLGRAGELDKIEEFINKM-PI---TPN--------------SLIWRTVLGACCRANCRKTELGRKAANMLFEM 761 (934)
Q Consensus 700 ~y~~li~~l~~~g~~~~A~~~~~~m-~~---~p~--------------~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~ 761 (934)
.+..+...+.+.|++++|.+.+++. .. .|+ ..+|..+...+... |+++.|...+++++++
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~--~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKN--KDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHh
Confidence 3444555555666666666665554 11 111 26788888888888 9999999999999999
Q ss_pred CCCCCchHHHHHHHHHcCCChHHHHHHHHHHHh
Q 046194 762 EPQNAVNYVLLANMYASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 762 ~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 794 (934)
+|+++..|..++.+|...|++++|.+.++...+
T Consensus 118 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 150 (198)
T 2fbn_A 118 DKNNVKALYKLGVANMYFGFLEEAKENLYKAAS 150 (198)
T ss_dssp STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 999999999999999999999999999988764
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00011 Score=65.30 Aligned_cols=94 Identities=13% Similarity=0.088 Sum_probs=73.5
Q ss_pred ccHHHHHHHHhhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCC-------CchH
Q 046194 699 EQFSCMVDLLGRAGELDKIEEFINKM-PIT-PNSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQN-------AVNY 769 (934)
Q Consensus 699 ~~y~~li~~l~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~-------~~~y 769 (934)
..|..+...+...|++++|...+++. ... .+..+|..+...+... |+++.|...+++++++.|++ +..|
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEK--GDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh--ccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 34556666777777777777777765 223 3566777777777777 88899999999888888776 7789
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHh
Q 046194 770 VLLANMYASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 770 ~~l~~~~~~~g~~~~a~~~~~~m~~ 794 (934)
..++.+|...|++++|.+.++...+
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHH
Confidence 9999999999999999999988875
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.75 E-value=7.2e-05 Score=66.58 Aligned_cols=90 Identities=13% Similarity=0.084 Sum_probs=56.7
Q ss_pred HHHHHHhhcCChHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCC---CchHHHHHH
Q 046194 703 CMVDLLGRAGELDKIEEFINKM-PITPNS----LIWRTVLGACCRANCRKTELGRKAANMLFEMEPQN---AVNYVLLAN 774 (934)
Q Consensus 703 ~li~~l~~~g~~~~A~~~~~~m-~~~p~~----~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~y~~l~~ 774 (934)
.+...+.+.|++++|.+.+++. ...|+. ..|..+...+... |+++.|...++++++..|++ +..+..++.
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~--~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYAT--RNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 3445555566666666655554 222221 3555555566666 77777777777777777777 555777777
Q ss_pred HHHcCCChHHHHHHHHHHHh
Q 046194 775 MYASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 775 ~~~~~g~~~~a~~~~~~m~~ 794 (934)
+|...|++++|.+.++.+.+
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 77777777777777776654
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=97.74 E-value=0.0001 Score=78.49 Aligned_cols=63 Identities=6% Similarity=-0.023 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHHh
Q 046194 730 SLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 730 ~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 794 (934)
..+|..+...+... |+++.|...++++++++|+++..|..++.+|...|++++|.+.+++..+
T Consensus 196 ~~~~~nla~~~~~~--g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 258 (336)
T 1p5q_A 196 LASHLNLAMCHLKL--QAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQ 258 (336)
T ss_dssp HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 46788888888888 9999999999999999999999999999999999999999999998875
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00016 Score=80.64 Aligned_cols=94 Identities=15% Similarity=0.068 Sum_probs=75.1
Q ss_pred cccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 046194 698 LEQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANM 775 (934)
Q Consensus 698 ~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~ 775 (934)
...|..+..+|.+.|++++|++.+++. .+.| +...|..+..++... |+++.|...++++++++|++...+..++.+
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~--g~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 394 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLM--NEFESAKGDFEKVLEVNPQNKAARLQISMC 394 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHTTC----CHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHc--cCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 356778888888899999998888877 4444 577888888999998 999999999999999999999999999999
Q ss_pred HHcCCChHHHHH-HHHHHH
Q 046194 776 YASGGKWEDVAK-ARKAMK 793 (934)
Q Consensus 776 ~~~~g~~~~a~~-~~~~m~ 793 (934)
+...|++++|.+ .++.|.
T Consensus 395 ~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 395 QKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 999999998864 344443
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.70 E-value=6e-05 Score=68.60 Aligned_cols=111 Identities=12% Similarity=-0.003 Sum_probs=79.7
Q ss_pred cccHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-------------hhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCC
Q 046194 629 SWNSMISGYARHGHGDKALTLFSQMKLDGPLPDH-------------VTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLI 695 (934)
Q Consensus 629 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-------------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~ 695 (934)
.+......+.+.|++++|+..|++..+ +.|+. ..|..+..++.+.|++++|+..++...+
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~--l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~----- 85 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAME--ISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH----- 85 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH--HHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHh--hCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----
Confidence 455667788899999999999999998 45651 1455555555555666666555554433
Q ss_pred CCcccHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHH----HHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchH
Q 046194 696 PQLEQFSCMVDLLGRAGELDKIEEFINKM-PITPN-SLIW----RTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNY 769 (934)
Q Consensus 696 p~~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p~-~~~~----~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y 769 (934)
+|++. .+.|+ ...| .....++... |++++|...++++++++|+|...+
T Consensus 86 ------------------------l~n~~~e~~pd~~~A~~~~~~~rG~aL~~l--gr~eEAl~~y~kAlel~p~d~~~~ 139 (159)
T 2hr2_A 86 ------------------------YFNRRGELNQDEGKLWISAVYSRALALDGL--GRGAEAMPEFKKVVEMIEERKGET 139 (159)
T ss_dssp ------------------------HHHHHCCTTSTHHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHCCSCC
T ss_pred ------------------------hhhccccCCCchHHHHHHHHHhHHHHHHHC--CCHHHHHHHHHHHHhcCCCcHHHH
Confidence 12211 34776 4578 8888899988 999999999999999999998775
Q ss_pred HHH
Q 046194 770 VLL 772 (934)
Q Consensus 770 ~~l 772 (934)
.-+
T Consensus 140 ~~~ 142 (159)
T 2hr2_A 140 PGK 142 (159)
T ss_dssp TTH
T ss_pred HHH
Confidence 443
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00012 Score=65.83 Aligned_cols=98 Identities=2% Similarity=-0.148 Sum_probs=64.8
Q ss_pred hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 046194 662 HVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLG 738 (934)
Q Consensus 662 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~ 738 (934)
...+..+...+...|++++|...|+...+. .|+ ...|..+..++...|++++|.+.+++. ...| +...|..+..
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhh---CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 445555666666666677776666666552 233 556666666777777777777766665 3333 4556777777
Q ss_pred HHHhccCCCcHHHHHHHHHHHhcCCC
Q 046194 739 ACCRANCRKTELGRKAANMLFEMEPQ 764 (934)
Q Consensus 739 ~~~~~~~~~~~~a~~~~~~~~~~~p~ 764 (934)
.+... |+.+.|...+++++++.|+
T Consensus 86 ~~~~~--~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 86 CQLEM--ESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHT--TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHH--hhHHHHHHHHHHHHHHChh
Confidence 77777 7888888888888887776
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.68 E-value=0.0003 Score=60.32 Aligned_cols=96 Identities=11% Similarity=0.018 Sum_probs=66.8
Q ss_pred CcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCC--CcccHHH
Q 046194 626 NVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIP--QLEQFSC 703 (934)
Q Consensus 626 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p--~~~~y~~ 703 (934)
+...|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|.+.|++..+. .+. +...+..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~ 81 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINV--IEDEYNKDVWAA 81 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--SCCTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CcccchHHHHHH
Confidence 44567777777788888888888888877742 223556666777777788888888888777662 122 3566667
Q ss_pred HHHHHhhc-CChHHHHHHHHhC
Q 046194 704 MVDLLGRA-GELDKIEEFINKM 724 (934)
Q Consensus 704 li~~l~~~-g~~~~A~~~~~~m 724 (934)
+..++.+. |++++|.+.+++.
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~ 103 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARA 103 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHH
Confidence 77777777 7777777777665
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.66 E-value=3e-05 Score=67.89 Aligned_cols=83 Identities=8% Similarity=-0.011 Sum_probs=58.9
Q ss_pred hcCChHHHHHHHHhC-CC---CCC-HHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHH
Q 046194 710 RAGELDKIEEFINKM-PI---TPN-SLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWED 784 (934)
Q Consensus 710 ~~g~~~~A~~~~~~m-~~---~p~-~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~ 784 (934)
..|++++|++.+++. .. .|+ ..+|..+...+... |+++.|...++++++++|+++..+..++.+|...|++++
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~--~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 79 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTL--GEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQ 79 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHH
Confidence 356677777777665 33 243 45677777777777 888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHh
Q 046194 785 VAKARKAMKE 794 (934)
Q Consensus 785 a~~~~~~m~~ 794 (934)
|.+.+++..+
T Consensus 80 A~~~~~~al~ 89 (117)
T 3k9i_A 80 GVELLLKIIA 89 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8887776654
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=97.64 E-value=7.9e-05 Score=66.24 Aligned_cols=61 Identities=8% Similarity=-0.033 Sum_probs=33.2
Q ss_pred cccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHHHHHHHHhHH
Q 046194 629 SWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGFKHFKSMSQ 690 (934)
Q Consensus 629 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 690 (934)
.|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|..+|+...+
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 66 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIE 66 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 34455555666666666666666665532 22334444555555556666666666555544
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00018 Score=66.56 Aligned_cols=61 Identities=10% Similarity=0.017 Sum_probs=40.8
Q ss_pred HHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCC------CCchHHHHHHHHHcCCChHHHHHHHHHHHh
Q 046194 732 IWRTVLGACCRANCRKTELGRKAANMLFEMEPQ------NAVNYVLLANMYASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 732 ~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~------~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 794 (934)
++..+...+... |+.+.|...+++++++.+. .+..+..++.+|...|++++|.+.+++..+
T Consensus 91 ~~~~l~~~~~~~--~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLL--QDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 445555555555 6666666666666555321 234577888999999999999888776653
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00035 Score=62.02 Aligned_cols=95 Identities=11% Similarity=0.065 Sum_probs=50.8
Q ss_pred HHHhhCcHHHHHHHHHHhHHhhCCCCC-c---ccHHHHHHHHhhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHH
Q 046194 671 ACSHAGLVDEGFKHFKSMSQVYGLIPQ-L---EQFSCMVDLLGRAGELDKIEEFINKM-PITPN----SLIWRTVLGACC 741 (934)
Q Consensus 671 a~~~~g~~~~a~~~~~~m~~~~~~~p~-~---~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~ 741 (934)
.+...|++++|...|+...+. .|+ . ..+..+..++.+.|++++|.+.+++. ...|+ ...+..+...+.
T Consensus 11 ~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 11 DALKNGKYDDASQLFLSFLEL---YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHH---CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 344455555555555554442 122 1 24444555555555555555555544 22222 344555556666
Q ss_pred hccCCCcHHHHHHHHHHHhcCCCCCchHH
Q 046194 742 RANCRKTELGRKAANMLFEMEPQNAVNYV 770 (934)
Q Consensus 742 ~~~~~~~~~a~~~~~~~~~~~p~~~~~y~ 770 (934)
.. |+.+.|...++++++..|+++....
T Consensus 88 ~~--g~~~~A~~~~~~~~~~~p~~~~~~~ 114 (129)
T 2xev_A 88 GE--GKNTEAQQTLQQVATQYPGSDAARV 114 (129)
T ss_dssp HT--TCHHHHHHHHHHHHHHSTTSHHHHH
T ss_pred Hc--CCHHHHHHHHHHHHHHCCCChHHHH
Confidence 66 7777777777777777777654433
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=97.62 E-value=0.0065 Score=63.49 Aligned_cols=225 Identities=12% Similarity=0.069 Sum_probs=135.4
Q ss_pred CChhHHHHHHHHHHHcCCCCCH-hHHHHHHHHHhchh-hHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhc-C-CHHHH
Q 046194 540 ELLPKAMNLVWFMMQRGQRLDH-FTFATVLSACASVA-TLERGMEVHACGVRACLEFDVVIGSALVDMYSKC-G-RIDYA 615 (934)
Q Consensus 540 g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~~-~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~-g-~~~~A 615 (934)
+..++|++++.+++.. .|+. ..++.--..+...+ .++++++.++.+++...+ +..+++.-...+.+. + +++++
T Consensus 68 e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~~E 144 (349)
T 3q7a_A 68 EKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPVSE 144 (349)
T ss_dssp CCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCHHH
T ss_pred CCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChHHH
Confidence 3344555555555543 2322 22333333333344 355555555555543222 444444444444444 5 67788
Q ss_pred HHHhccCCCC---CcccccHHHHHHHHcCChH--------HHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCc-------
Q 046194 616 SRFFDLMPVR---NVYSWNSMISGYARHGHGD--------KALTLFSQMKLDGPLPDHVTFVGVLSACSHAGL------- 677 (934)
Q Consensus 616 ~~~~~~~~~~---~~~~~~~li~~~~~~g~~~--------~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~------- 677 (934)
+++++.+.+. |..+|+--.-.+.+.|.++ ++++.++++.+.. .-|...|+.-...+.+.+.
T Consensus 145 L~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~ 223 (349)
T 3q7a_A 145 IEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRS 223 (349)
T ss_dssp HHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHH
Confidence 8888877653 4456666555555555555 8999999998864 2345667766666666665
Q ss_pred HHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhhcCCh--------------------HHHHHHHHhC-CC-------CC
Q 046194 678 VDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGRAGEL--------------------DKIEEFINKM-PI-------TP 728 (934)
Q Consensus 678 ~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~--------------------~~A~~~~~~m-~~-------~p 728 (934)
+++++++++++.. ..|+ ...|+.+-.++.+.|+- .+..++..++ +. .+
T Consensus 224 ~~eELe~~~~aI~---~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (349)
T 3q7a_A 224 LQDELIYILKSIH---LIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLP 300 (349)
T ss_dssp HHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSC
T ss_pred HHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCC
Confidence 7888888888876 3444 66777777777776653 4455555555 22 35
Q ss_pred CHHHHHHHHHHHHhccCCCcHHHHHHHHHHH-hcCCCCCchHHHHH
Q 046194 729 NSLIWRTVLGACCRANCRKTELGRKAANMLF-EMEPQNAVNYVLLA 773 (934)
Q Consensus 729 ~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~-~~~p~~~~~y~~l~ 773 (934)
+...+.-|...|... |+.+.|..+++.+. +.+|-....+...+
T Consensus 301 s~~al~~l~d~~~~~--~~~~~a~~~~~~l~~~~dpir~~yw~~~~ 344 (349)
T 3q7a_A 301 VPLALEYLADSFIEQ--NRVDDAAKVFEKLSSEYDQMRAGYWEFRR 344 (349)
T ss_dssp CHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred cHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhhhChHHHHHHHHHH
Confidence 777888898999888 99999999999986 67886655554433
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00015 Score=74.94 Aligned_cols=111 Identities=3% Similarity=-0.146 Sum_probs=88.4
Q ss_pred ChhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCC-CcccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHH
Q 046194 661 DHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIP-QLEQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVL 737 (934)
Q Consensus 661 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll 737 (934)
+...+..+...+...|++++|...|+...+. .| +...|..+..+|.+.|++++|.+.+++. ...| +...|..+.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 79 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 3456777778888999999999999988873 45 4778888999999999999999999886 5566 466788888
Q ss_pred HHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 046194 738 GACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMY 776 (934)
Q Consensus 738 ~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~ 776 (934)
.++... |+++.|...++++++++|+++..+...++..
T Consensus 80 ~~~~~~--g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~ 116 (281)
T 2c2l_A 80 QCQLEM--ESYDEAIANLQRAYSLAKEQRLNFGDDIPSA 116 (281)
T ss_dssp HHHHHT--TCHHHHHHHHHHHHHHHHHTTCCCCSHHHHH
T ss_pred HHHHHc--CCHHHHHHHHHHHHHhCccchhhHHHHHHHH
Confidence 888888 9999999999999999988765554444433
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00018 Score=63.25 Aligned_cols=95 Identities=9% Similarity=0.034 Sum_probs=52.9
Q ss_pred HHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 046194 666 VGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCR 742 (934)
Q Consensus 666 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~ 742 (934)
..+...+.+.|++++|+..|+...+ ..|+ ...|..+..++.+.|++++|++.+++. .+.| +...|..|...+..
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQ---KEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 3344455556666666666665554 2232 455555666666666666666666554 3344 34556666666666
Q ss_pred ccCCCcHHHHHHHHHHHhcCCCC
Q 046194 743 ANCRKTELGRKAANMLFEMEPQN 765 (934)
Q Consensus 743 ~~~~~~~~a~~~~~~~~~~~p~~ 765 (934)
. |+.+.|...++++++++|++
T Consensus 98 ~--g~~~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 98 E--HNANAALASLRAWLLSQPQY 118 (121)
T ss_dssp H--HHHHHHHHHHHHHHC-----
T ss_pred c--CCHHHHHHHHHHHHHhCcCC
Confidence 6 77777777777777777764
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.59 E-value=7.5e-05 Score=79.56 Aligned_cols=144 Identities=9% Similarity=-0.031 Sum_probs=70.5
Q ss_pred ccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHh
Q 046194 630 WNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLG 709 (934)
Q Consensus 630 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~ 709 (934)
|..+...+.+.|++++|+..|++..+ +.|+... +...|+.+++...+. ...|..+..+|.
T Consensus 182 ~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~~~~ 241 (338)
T 2if4_A 182 RKMDGNSLFKEEKLEEAMQQYEMAIA--YMGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHTCSSSCCHHHHHHHHHHHH--HSCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH--Hhccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHHHHH
Confidence 44555666677888888888888776 3455332 223334444332221 125667777777
Q ss_pred hcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHH-cCCChHHHH
Q 046194 710 RAGELDKIEEFINKM-PITP-NSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYA-SGGKWEDVA 786 (934)
Q Consensus 710 ~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~-~~g~~~~a~ 786 (934)
+.|++++|++.+++. ...| +...|..+..++... |+++.|...++++++++|+++..+..|..+.. ..+..+++.
T Consensus 242 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~--g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAEL--GQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp TTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT--TCHHHHHHHHHHTTC---------------------------
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888777766 3344 466777777777777 88888888888888888888888777777733 445666677
Q ss_pred HHHHHHHhC
Q 046194 787 KARKAMKEA 795 (934)
Q Consensus 787 ~~~~~m~~~ 795 (934)
+.++.|.+.
T Consensus 320 ~~~~~~l~~ 328 (338)
T 2if4_A 320 EMYKGIFKG 328 (338)
T ss_dssp ---------
T ss_pred HHHHHhhCC
Confidence 777666543
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.58 E-value=0.0011 Score=73.21 Aligned_cols=192 Identities=7% Similarity=-0.069 Sum_probs=114.8
Q ss_pred HHHHhcCCHHHHHHHHHhhccC-C---Cc---------------chHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCCH
Q 046194 502 SCYGKCGEMDDCEKIFARMSER-R---DE---------------VSWNSMISGYIHNELLPKAMNLVWFMMQRG-QRLDH 561 (934)
Q Consensus 502 ~~~~~~g~~~~A~~~~~~~~~~-p---~~---------------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~ 561 (934)
..+.+.|++++|.+.|..+.+. | +. .++..+...|...|++++|.+.+.++...- ..++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 4456778888888887776553 1 11 124455666666666666666665554310 00111
Q ss_pred hHHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCC-----CC----cccccH
Q 046194 562 FTFATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPV-----RN----VYSWNS 632 (934)
Q Consensus 562 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~ 632 (934)
.+ ...+.+.+-..+...|+.+.|..++..... .+ ..++..
T Consensus 92 ~~-------------------------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (434)
T 4b4t_Q 92 KT-------------------------------VKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIK 140 (434)
T ss_dssp HH-------------------------------HHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHH
T ss_pred HH-------------------------------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHH
Confidence 00 011122223333445556666555554321 11 125666
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCC----CCC-hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC-----cccHH
Q 046194 633 MISGYARHGHGDKALTLFSQMKLDGP----LPD-HVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ-----LEQFS 702 (934)
Q Consensus 633 li~~~~~~g~~~~A~~l~~~m~~~g~----~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~y~ 702 (934)
+...|...|++++|+.++++....-. +|. ..++..++..|...|++++|..++++......-.++ ...+.
T Consensus 141 la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 220 (434)
T 4b4t_Q 141 LATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDL 220 (434)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHH
Confidence 77888888888888888887765311 222 245777778899999999999999887653222222 35677
Q ss_pred HHHHHHhhcCChHHHHHHHHhC
Q 046194 703 CMVDLLGRAGELDKIEEFINKM 724 (934)
Q Consensus 703 ~li~~l~~~g~~~~A~~~~~~m 724 (934)
.++..+...|++++|...+.+.
T Consensus 221 ~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 221 MSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp HHHHHTTSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHH
Confidence 8888889999999998877654
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00019 Score=77.26 Aligned_cols=88 Identities=10% Similarity=-0.016 Sum_probs=77.9
Q ss_pred cccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 046194 698 LEQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANM 775 (934)
Q Consensus 698 ~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~ 775 (934)
...|..+..+|.+.|++++|++.+++. ...| +...|..+..++... |++++|...++++++++|+++..+..++.+
T Consensus 273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~--g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~ 350 (370)
T 1ihg_A 273 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGL--KEYDQALADLKKAQEIAPEDKAIQAELLKV 350 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHc--cCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 567888999999999999999999887 5666 467888888899888 999999999999999999999999999999
Q ss_pred HHcCCChHHHHH
Q 046194 776 YASGGKWEDVAK 787 (934)
Q Consensus 776 ~~~~g~~~~a~~ 787 (934)
+...++.+++.+
T Consensus 351 ~~~~~~~~~a~k 362 (370)
T 1ihg_A 351 KQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999888887754
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.54 E-value=0.0011 Score=75.61 Aligned_cols=170 Identities=7% Similarity=-0.068 Sum_probs=133.6
Q ss_pred CHHHHHHHhccCCC--C-CcccccHHHHHHHHcCC----------hHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhC
Q 046194 611 RIDYASRFFDLMPV--R-NVYSWNSMISGYARHGH----------GDKALTLFSQMKLDGPLPD-HVTFVGVLSACSHAG 676 (934)
Q Consensus 611 ~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~----------~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g 676 (934)
.-++|.+.++.+.. | +..+|+.--..+...|+ ++++++.++++.+. .|. ...|..-..++.+.|
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcc
Confidence 34567788877763 3 44577776666666666 89999999999985 455 566777777788888
Q ss_pred --cHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcC-ChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcc-------
Q 046194 677 --LVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAG-ELDKIEEFINKM-PITP-NSLIWRTVLGACCRAN------- 744 (934)
Q Consensus 677 --~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g-~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~------- 744 (934)
++++++++++++.+. -.-+...|+.-..++.+.| .+++++++++++ ...| |...|+.....+....
T Consensus 122 ~~~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 122 EPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccc
Confidence 779999999999884 2334777888888888899 899999999998 5555 6788988888776620
Q ss_pred -----CCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHH
Q 046194 745 -----CRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWED 784 (934)
Q Consensus 745 -----~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~ 784 (934)
.+.++++...++++++++|+|.+.|..+.+++...|+.++
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 0346889999999999999999999999999999998655
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00091 Score=73.99 Aligned_cols=178 Identities=8% Similarity=-0.055 Sum_probs=103.3
Q ss_pred HHHHHhcCCHHHHHHHhccCCCC-----Ccc---------------cccHHHHHHHHcCChHHHHHHHHHHHHCC-CCCC
Q 046194 603 VDMYSKCGRIDYASRFFDLMPVR-----NVY---------------SWNSMISGYARHGHGDKALTLFSQMKLDG-PLPD 661 (934)
Q Consensus 603 i~~y~~~g~~~~A~~~~~~~~~~-----~~~---------------~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~ 661 (934)
...+.+.|++++|.+.|..+.+. +.. ++..+...|...|++++|.+++.++...- -.++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 34466778888888887766421 111 24556777777788888887777765521 1122
Q ss_pred hhh----HHHHHHHHHhhCcHHHHHHHHHHhHHhh---CCCCC-cccHHHHHHHHhhcCChHHHHHHHHhC-----C--C
Q 046194 662 HVT----FVGVLSACSHAGLVDEGFKHFKSMSQVY---GLIPQ-LEQFSCMVDLLGRAGELDKIEEFINKM-----P--I 726 (934)
Q Consensus 662 ~~t----~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m-----~--~ 726 (934)
..+ ...+-..+...|..+++..+++...... +..+. ...+..++..|...|++++|.+++++. + -
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 211 1122222345677777777777665421 11222 345666777777777777777777664 1 1
Q ss_pred CCC-HHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCCh
Q 046194 727 TPN-SLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKW 782 (934)
Q Consensus 727 ~p~-~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~ 782 (934)
+|. ..++..++..|... |+++.|...++++....+..+......+.++...|..
T Consensus 171 ~~~~~~~~~~~~~~~~~~--~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~ 225 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKL--RNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGIL 225 (434)
T ss_dssp STHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHh--CcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHH
Confidence 222 33566666666666 7777777777777777665544444555554444433
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00021 Score=66.69 Aligned_cols=76 Identities=17% Similarity=0.124 Sum_probs=59.1
Q ss_pred cccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCC-chHHHHHH
Q 046194 698 LEQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNA-VNYVLLAN 774 (934)
Q Consensus 698 ~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~-~~y~~l~~ 774 (934)
...|..+..+|.+.|++++|+..+++. .+.| +...|..+..++... |+++.|...++++++++|+++ .....+..
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~--g~~~~A~~~~~~al~l~p~~~~~~~~~l~~ 140 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAA--WKLDEAEEDLKLLLRNHPAAASVVAREMKI 140 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH--hcHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 456777888888888888888888776 4445 466788888888888 999999999999999999987 44445444
Q ss_pred H
Q 046194 775 M 775 (934)
Q Consensus 775 ~ 775 (934)
+
T Consensus 141 ~ 141 (162)
T 3rkv_A 141 V 141 (162)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00013 Score=77.71 Aligned_cols=113 Identities=6% Similarity=0.032 Sum_probs=87.4
Q ss_pred hHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 046194 664 TFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKMPITPNSLIWRTVLGACCRA 743 (934)
Q Consensus 664 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~ 743 (934)
.+..+...+...|++++|...|+...+. .|+.. .+...|+.+++...+.. ..|..+..++...
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~-------~~~~~~~~~~~~~~l~~-------~~~~nla~~~~~~ 243 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAY---MGDDF-------MFQLYGKYQDMALAVKN-------PCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHH---SCHHH-------HHTCCHHHHHHHHHHHT-------HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH---hccch-------hhhhcccHHHHHHHHHH-------HHHHHHHHHHHHc
Confidence 3555666777888999999998887762 33321 23344555555544421 3778888888888
Q ss_pred cCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 046194 744 NCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMKEA 795 (934)
Q Consensus 744 ~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~ 795 (934)
|+++.|...++++++++|+++..|..++.+|...|++++|.+.+++..+.
T Consensus 244 --g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l 293 (338)
T 2if4_A 244 --KRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY 293 (338)
T ss_dssp --TCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-
T ss_pred --CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998877543
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00046 Score=74.32 Aligned_cols=110 Identities=9% Similarity=0.025 Sum_probs=83.2
Q ss_pred hHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhCCCCC-CHHHHHHHHHHHHh
Q 046194 664 TFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKMPITP-NSLIWRTVLGACCR 742 (934)
Q Consensus 664 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~~~p-~~~~~~~ll~~~~~ 742 (934)
.+..+...+.+.|++++|++.|++..+.. |.. ...-..+++. ...| +..+|..+..++..
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~---~~~----------~~~~~~~~~~------~~~~~~~~~~~nla~~~~~ 285 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYV---EGS----------RAAAEDADGA------KLQPVALSCVLNIGACKLK 285 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH---HHH----------HHHSCHHHHG------GGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHh---hcC----------ccccChHHHH------HHHHHHHHHHHHHHHHHHh
Confidence 46677777888888888888888776621 100 0001111111 1233 35678888888888
Q ss_pred ccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHHh
Q 046194 743 ANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 743 ~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 794 (934)
. |+++.|...++++++++|+++..|..++.+|...|++++|.+.+++..+
T Consensus 286 ~--g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~ 335 (370)
T 1ihg_A 286 M--SDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE 335 (370)
T ss_dssp T--TCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred c--cCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 8 9999999999999999999999999999999999999999999988774
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00032 Score=64.91 Aligned_cols=96 Identities=8% Similarity=0.020 Sum_probs=47.1
Q ss_pred HHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC----cccHHHHHHHHhhcCChHHHHHHHHhC-------CCCC-CHHH
Q 046194 665 FVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ----LEQFSCMVDLLGRAGELDKIEEFINKM-------PITP-NSLI 732 (934)
Q Consensus 665 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~y~~li~~l~~~g~~~~A~~~~~~m-------~~~p-~~~~ 732 (934)
+..+...+...|++++|...++...+...-.++ ...+..+...+...|++++|.+.+++. +..+ ...+
T Consensus 52 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 131 (164)
T 3ro3_A 52 YSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRA 131 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHH
Confidence 444444455555555555555554432111111 234445555555555655555555443 1111 1234
Q ss_pred HHHHHHHHHhccCCCcHHHHHHHHHHHhcC
Q 046194 733 WRTVLGACCRANCRKTELGRKAANMLFEME 762 (934)
Q Consensus 733 ~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~ 762 (934)
+..+...+... |+.+.|...+++++++.
T Consensus 132 ~~~la~~~~~~--g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 132 CWSLGNAYTAL--GNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHH--TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHc--cCHHHHHHHHHHHHHHH
Confidence 45555556566 67777777766666553
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00095 Score=74.30 Aligned_cols=112 Identities=4% Similarity=-0.046 Sum_probs=81.8
Q ss_pred hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 046194 662 HVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKMPITPNSLIWRTVLGACC 741 (934)
Q Consensus 662 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~ 741 (934)
...+..+...+.+.|++++|+..|++..+. .|+...+ .-++..+ ++. -....|..+..++.
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~---~p~~~~~-----------~~~~~~~-~~~----~~~~~~~nla~~~~ 328 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSW---LEMEYGL-----------SEKESKA-SES----FLLAAFLNLAMCYL 328 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HTTCCSC-----------CHHHHHH-HHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH---hcccccC-----------ChHHHHH-HHH----HHHHHHHHHHHHHH
Confidence 345666666777777788887777777653 2221110 0011100 000 01457888888888
Q ss_pred hccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHHh
Q 046194 742 RANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 742 ~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 794 (934)
.. |+++.|...++++++++|+++..|..++.+|...|++++|...+++..+
T Consensus 329 ~~--g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~ 379 (457)
T 1kt0_A 329 KL--REYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE 379 (457)
T ss_dssp HT--TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred Hh--cCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 88 9999999999999999999999999999999999999999999998875
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00011 Score=64.11 Aligned_cols=68 Identities=12% Similarity=0.056 Sum_probs=36.0
Q ss_pred ccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCch
Q 046194 699 EQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVN 768 (934)
Q Consensus 699 ~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 768 (934)
..+..+..+|.+.|++++|.+.+++. ...| +..++..+..++... |+.++|...++++++..|+++..
T Consensus 28 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~--g~~~~A~~~~~~al~~~p~~~~~ 97 (117)
T 3k9i_A 28 ECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNL--GRYEQGVELLLKIIAETSDDETI 97 (117)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCcHHH
Confidence 33444444444445555554444443 2223 244555555555555 66666666666666666666543
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=97.38 E-value=0.011 Score=61.39 Aligned_cols=179 Identities=12% Similarity=0.048 Sum_probs=128.9
Q ss_pred HHHHHHHhccCCC---CCcccccHHHHHHHHcCC--hHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCc-HHHHHHHH
Q 046194 612 IDYASRFFDLMPV---RNVYSWNSMISGYARHGH--GDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGL-VDEGFKHF 685 (934)
Q Consensus 612 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~-~~~a~~~~ 685 (934)
++++..+++.+.. ++..+|+.-.-.+...|+ +++++++++++.+.. +-|...|..-.-.+.+.|. ++++++++
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 5667777776653 466788887777777774 899999999999964 3356667766667777887 69999999
Q ss_pred HHhHHhhCCCCCcccHHHHHHHHhhc--------------CChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCC---
Q 046194 686 KSMSQVYGLIPQLEQFSCMVDLLGRA--------------GELDKIEEFINKM-PITP-NSLIWRTVLGACCRANCR--- 746 (934)
Q Consensus 686 ~~m~~~~~~~p~~~~y~~li~~l~~~--------------g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~--- 746 (934)
+.+.+. -.-|...|+....++.+. +.++++++++++. ...| |...|+-+-+.+.... |
T Consensus 169 ~~~I~~--~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~-~~~~ 245 (331)
T 3dss_A 169 DSLITR--NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGS-GRCE 245 (331)
T ss_dssp HHHHHH--CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSS-CGGG
T ss_pred HHHHHH--CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcc-Cccc
Confidence 999874 233466677666666555 5688999999887 3445 6888987766665542 2
Q ss_pred -------CcHHHHHHHHHHHhcCCCCCchHHHHHHHH---HcCCChHHHHHHHHHHHh
Q 046194 747 -------KTELGRKAANMLFEMEPQNAVNYVLLANMY---ASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 747 -------~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~---~~~g~~~~a~~~~~~m~~ 794 (934)
.++.+...++.+++++|++.-.+..++.+. ...|..+++...+.++.+
T Consensus 246 ~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 367889999999999999855544444332 246777788888877764
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00036 Score=77.52 Aligned_cols=128 Identities=12% Similarity=0.127 Sum_probs=83.4
Q ss_pred HHhhCcHHHHHHHHHHhHHhhC--CCCC----cccHHHHHHHHhhcCChHHHHHHHHhC---------CCCCC-HHHHHH
Q 046194 672 CSHAGLVDEGFKHFKSMSQVYG--LIPQ----LEQFSCMVDLLGRAGELDKIEEFINKM---------PITPN-SLIWRT 735 (934)
Q Consensus 672 ~~~~g~~~~a~~~~~~m~~~~~--~~p~----~~~y~~li~~l~~~g~~~~A~~~~~~m---------~~~p~-~~~~~~ 735 (934)
+...|++++|..++++..+... +-|+ ..+++.|..+|...|++++|..++++. +..|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4456666666666665544321 1122 445666667777777777776666554 23344 335677
Q ss_pred HHHHHHhccCCCcHHHHHHHHHHHhc-----CCCCCch---HHHHHHHHHcCCChHHHHHHHHHHHhCCCcCCC
Q 046194 736 VLGACCRANCRKTELGRKAANMLFEM-----EPQNAVN---YVLLANMYASGGKWEDVAKARKAMKEAEVKKEA 801 (934)
Q Consensus 736 ll~~~~~~~~~~~~~a~~~~~~~~~~-----~p~~~~~---y~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 801 (934)
|...|... |++++|+..+++++++ .|+.|.+ +..|..++...|++++|..+++.+++...+..|
T Consensus 399 La~~~~~~--G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~~~~ 470 (490)
T 3n71_A 399 AGLTNWHA--GHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALNNQP 470 (490)
T ss_dssp HHHHHHHT--TCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHC--CCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 77777777 8888888888777654 4555443 567888899999999999999999876544433
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00021 Score=61.34 Aligned_cols=89 Identities=9% Similarity=-0.019 Sum_probs=70.2
Q ss_pred cccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCC------CchH
Q 046194 698 LEQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQN------AVNY 769 (934)
Q Consensus 698 ~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~y 769 (934)
...+..+...+.+.|++++|.+.+++. ...| +..+|..+..++... |+++.|...++++++++|++ ...+
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 81 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKL--GEYTQAIQMCQQGLRYTSTAEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHTSCSSTTSHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 445666777788888888888888776 3344 567788888888888 99999999999999999998 7778
Q ss_pred HHHHHHHHcCCChHHHHHH
Q 046194 770 VLLANMYASGGKWEDVAKA 788 (934)
Q Consensus 770 ~~l~~~~~~~g~~~~a~~~ 788 (934)
..++.++...|+.++|.+.
T Consensus 82 ~~~~~~~~~~~~~~~a~~~ 100 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVVE 100 (111)
T ss_dssp HHHHHHHHHHHCCCCCSSS
T ss_pred HHHHHHHHHHHhHhhhHhH
Confidence 8888888888877776443
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00087 Score=56.41 Aligned_cols=64 Identities=13% Similarity=0.134 Sum_probs=59.2
Q ss_pred CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHHh
Q 046194 729 NSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 729 ~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 794 (934)
+...|..+...+... |+++.|...++++++++|+++..|..++.+|...|++++|.+.+++..+
T Consensus 6 ~~~~~~~lg~~~~~~--g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKH--DNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 567888899999888 9999999999999999999999999999999999999999999887764
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00068 Score=55.58 Aligned_cols=81 Identities=20% Similarity=0.282 Sum_probs=61.2
Q ss_pred cccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 046194 698 LEQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANM 775 (934)
Q Consensus 698 ~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~ 775 (934)
...+..+...+.+.|++++|.+.+++. ...| +..+|..+...+... |+.+.|...++++++++|.++..+..++.+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~--~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 86 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQ--GDYDEAIEYYQKALELDPNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH--hhHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 345566666777777777777777665 2333 466777788888888 899999999999999999998888888888
Q ss_pred HHcCC
Q 046194 776 YASGG 780 (934)
Q Consensus 776 ~~~~g 780 (934)
+...|
T Consensus 87 ~~~~g 91 (91)
T 1na3_A 87 KQKQG 91 (91)
T ss_dssp HHHHC
T ss_pred HHhcC
Confidence 77654
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00082 Score=58.23 Aligned_cols=77 Identities=14% Similarity=0.161 Sum_probs=63.8
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHH
Q 046194 716 KIEEFINKM-PITP-NSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMK 793 (934)
Q Consensus 716 ~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~ 793 (934)
+|.+.+++. ...| +...|..+...+... |+++.|...++++++++|+++..|..++.+|...|++++|.+.++...
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEH--EQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHc--cCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 455555554 4445 467788888888888 999999999999999999999999999999999999999999988776
Q ss_pred h
Q 046194 794 E 794 (934)
Q Consensus 794 ~ 794 (934)
+
T Consensus 81 ~ 81 (115)
T 2kat_A 81 A 81 (115)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00023 Score=64.56 Aligned_cols=83 Identities=10% Similarity=0.062 Sum_probs=58.9
Q ss_pred hcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCC----------cHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 046194 710 RAGELDKIEEFINKM-PITP-NSLIWRTVLGACCRANCRK----------TELGRKAANMLFEMEPQNAVNYVLLANMYA 777 (934)
Q Consensus 710 ~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~----------~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~ 777 (934)
|.+.+++|.+.+++. ...| +...|..+..++... ++ +++|+..++++++++|+++..|..++++|.
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l--~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLEL--SQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH--HHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh--cccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 334445555555444 2333 344444444444443 33 569999999999999999999999999999
Q ss_pred cCC-----------ChHHHHHHHHHHHh
Q 046194 778 SGG-----------KWEDVAKARKAMKE 794 (934)
Q Consensus 778 ~~g-----------~~~~a~~~~~~m~~ 794 (934)
+.| ++++|.+.+++..+
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~ 119 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVD 119 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHH
Confidence 885 89999999988875
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00018 Score=75.95 Aligned_cols=75 Identities=9% Similarity=0.048 Sum_probs=55.3
Q ss_pred HHHHHHhcCCHHHHHHHhccCCCCCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHH
Q 046194 602 LVDMYSKCGRIDYASRFFDLMPVRNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEG 681 (934)
Q Consensus 602 li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 681 (934)
-...|.+.++++++..+.++=. .|.-.|..-+..|+.+-|.++++-..+.| +...|...+-.|...=++|-+
T Consensus 460 AA~LYkkn~rw~qsi~l~KkDk-----lykDAietAa~S~~~elaeeLL~yFv~~g---~~EcF~a~LytCYdLlrpDvV 531 (624)
T 3lvg_A 460 AAYLFKGNNRWKQSVELCKKDS-----LYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVV 531 (624)
T ss_dssp HHHHHHTTCHHHHHSSCSSTTC-----CTTGGGTTTTTCCCTTHHHHHHHHHHHHC---STHHHHHHHHHTSSSSSCHHH
T ss_pred HHHHHHhcccHHHHHHHHHhcc-----cHHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHhhccChHHH
Confidence 3456888999999887665422 33444555667899999999999998866 556788888888887777777
Q ss_pred HHH
Q 046194 682 FKH 684 (934)
Q Consensus 682 ~~~ 684 (934)
+++
T Consensus 532 lEl 534 (624)
T 3lvg_A 532 LET 534 (624)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0025 Score=52.48 Aligned_cols=71 Identities=10% Similarity=0.022 Sum_probs=60.4
Q ss_pred CCCHHHHHHHHHHHHhccC-CCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHHhCCC
Q 046194 727 TPNSLIWRTVLGACCRANC-RKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMKEAEV 797 (934)
Q Consensus 727 ~p~~~~~~~ll~~~~~~~~-~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 797 (934)
.+|+..|..+..++...+. ...+.|...++++++++|+++.....+++++...|++++|...++.+.+...
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4567788888888865520 2279999999999999999999999999999999999999999999987543
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0012 Score=59.84 Aligned_cols=124 Identities=11% Similarity=0.036 Sum_probs=75.1
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhCcH----------HHHHHHHHHhHHhhCCCCC-cccHHHH
Q 046194 637 YARHGHGDKALTLFSQMKLDGPLPD-HVTFVGVLSACSHAGLV----------DEGFKHFKSMSQVYGLIPQ-LEQFSCM 704 (934)
Q Consensus 637 ~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~----------~~a~~~~~~m~~~~~~~p~-~~~y~~l 704 (934)
..+.+++++|++.+++..+. .|+ ...|..+..++...+++ ++|+..|++..+ +.|+ ...|.++
T Consensus 12 ~~r~~~feeA~~~~~~Ai~l--~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~---ldP~~~~A~~~L 86 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL---IDPKKDEAVWCI 86 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHH---hCcCcHHHHHHH
Confidence 44566777888888887774 454 55666666666666654 466666666654 3444 4455556
Q ss_pred HHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHH
Q 046194 705 VDLLGRAGELDKIEEFINKMPITPNSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWED 784 (934)
Q Consensus 705 i~~l~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~ 784 (934)
..+|...|.+ .|+... .. |++++|...++++++++|++......+-. .++
T Consensus 87 G~ay~~lg~l------------~P~~~~---------a~--g~~~eA~~~~~kAl~l~P~~~~y~~al~~-------~~k 136 (158)
T 1zu2_A 87 GNAYTSFAFL------------TPDETE---------AK--HNFDLATQFFQQAVDEQPDNTHYLKSLEM-------TAK 136 (158)
T ss_dssp HHHHHHHHHH------------CCCHHH---------HH--HHHHHHHHHHHHHHHHCTTCHHHHHHHHH-------HHT
T ss_pred HHHHHHhccc------------Ccchhh---------hh--ccHHHHHHHHHHHHHhCCCCHHHHHHHHH-------HHh
Confidence 6555555432 333210 12 68999999999999999998544333322 345
Q ss_pred HHHHHHHHHhC
Q 046194 785 VAKARKAMKEA 795 (934)
Q Consensus 785 a~~~~~~m~~~ 795 (934)
|.++.-.+...
T Consensus 137 a~el~~~~~~~ 147 (158)
T 1zu2_A 137 APQLHAEAYKQ 147 (158)
T ss_dssp HHHHHHHHHHS
T ss_pred CHhccCccccc
Confidence 55555545443
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.01 E-value=0.0016 Score=72.26 Aligned_cols=121 Identities=12% Similarity=-0.088 Sum_probs=67.8
Q ss_pred HHcCChHHHHHHHHHHHHC---CCCC---C-hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhh----CC-CCC-cccHHHH
Q 046194 638 ARHGHGDKALTLFSQMKLD---GPLP---D-HVTFVGVLSACSHAGLVDEGFKHFKSMSQVY----GL-IPQ-LEQFSCM 704 (934)
Q Consensus 638 ~~~g~~~~A~~l~~~m~~~---g~~p---~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~----~~-~p~-~~~y~~l 704 (934)
..+|++++|+.++++..+. -+-| + ..+++.|..+|...|++++|..++++..+.+ |- .|+ ..+|+.|
T Consensus 320 ~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 399 (490)
T 3n71_A 320 RSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRA 399 (490)
T ss_dssp HTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 3445555555555554431 1122 2 2346666666777777777777666654421 11 122 4566677
Q ss_pred HHHHhhcCChHHHHHHHHhC---------CCCCCHHHHHHHHHHHH-hccCCCcHHHHHHHHHHHh
Q 046194 705 VDLLGRAGELDKIEEFINKM---------PITPNSLIWRTVLGACC-RANCRKTELGRKAANMLFE 760 (934)
Q Consensus 705 i~~l~~~g~~~~A~~~~~~m---------~~~p~~~~~~~ll~~~~-~~~~~~~~~a~~~~~~~~~ 760 (934)
..+|...|++++|..++++. +-.|+......++..+. .. +.++.|+..++++.+
T Consensus 400 a~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~--~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 400 GLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMEL--RMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 77777777777777776654 23344443334444444 44 677777777776654
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0038 Score=53.24 Aligned_cols=65 Identities=12% Similarity=0.039 Sum_probs=59.7
Q ss_pred CCHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHHh
Q 046194 728 PNSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 728 p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 794 (934)
++...|..+...+... |+++.|...++++++++|+++..+..++.+|...|++++|.+.++...+
T Consensus 2 ~~~~~~~~~g~~~~~~--~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 66 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQ--GLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR 66 (111)
T ss_dssp THHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3456788888888888 9999999999999999999999999999999999999999999988875
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=96.66 E-value=0.013 Score=66.60 Aligned_cols=147 Identities=14% Similarity=0.037 Sum_probs=117.8
Q ss_pred CChHHHHHHHHHHHHCCCCCChhh-HHHHHHHHHhhCc----------HHHHHHHHHHhHHhhCCCCCcccHHHHHHHHh
Q 046194 641 GHGDKALTLFSQMKLDGPLPDHVT-FVGVLSACSHAGL----------VDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLG 709 (934)
Q Consensus 641 g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~g~----------~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~ 709 (934)
...++|++.++++.+ +.|+..| |+.--.++.+.|+ +++++++++.+.+. -+-+...|..-..++.
T Consensus 43 ~~~eeal~~~~~~l~--~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~ 118 (567)
T 1dce_A 43 ELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLS 118 (567)
T ss_dssp CCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 345788999999999 5787554 5555555666666 99999999999873 2233677888888888
Q ss_pred hcC--ChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcC-----
Q 046194 710 RAG--ELDKIEEFINKM-PITP-NSLIWRTVLGACCRANCR-KTELGRKAANMLFEMEPQNAVNYVLLANMYASG----- 779 (934)
Q Consensus 710 ~~g--~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~-~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~----- 779 (934)
+.| ++++|+++++++ ...| +...|+.-...+... | ..+.+...++++++.+|.|.++|...+.++...
T Consensus 119 ~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l--~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~ 196 (567)
T 1dce_A 119 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQA--AVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPD 196 (567)
T ss_dssp TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--CCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCC
T ss_pred HcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHc--CCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccc
Confidence 999 779999999998 4444 688999988888888 7 889999999999999999999999999998874
Q ss_pred ---------CChHHHHHHHHHHH
Q 046194 780 ---------GKWEDVAKARKAMK 793 (934)
Q Consensus 780 ---------g~~~~a~~~~~~m~ 793 (934)
++++++.+..+...
T Consensus 197 ~~~~~~~~~~~~~eel~~~~~ai 219 (567)
T 1dce_A 197 SGPQGRLPENVLLKELELVQNAF 219 (567)
T ss_dssp SSSCCSSCHHHHHHHHHHHHHHH
T ss_pred ccccccccHHHHHHHHHHHHHHH
Confidence 55677777765554
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0089 Score=48.56 Aligned_cols=63 Identities=17% Similarity=0.284 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHHh
Q 046194 730 SLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 730 ~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 794 (934)
...|..+...+... |+++.|...++++++++|+++..+..++.+|...|++++|.+.+++..+
T Consensus 9 ~~~~~~la~~~~~~--~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 9 AEAWYNLGNAYYKQ--GDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 45778888888888 9999999999999999999999999999999999999999999888765
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=96.64 E-value=0.013 Score=52.63 Aligned_cols=115 Identities=5% Similarity=-0.077 Sum_probs=59.3
Q ss_pred CChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHH
Q 046194 641 GHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEF 720 (934)
Q Consensus 641 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~ 720 (934)
+++++|+..|++..+.| .|+.. +...|...+.+++|.++|++..+. -+...+..|..+|..-.
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~-------- 71 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGK-------- 71 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCS--------
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCC--------
Confidence 34556666666666655 33322 333444455555566665555442 23334444444444300
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHc----CCChHHHHHHHHHHHhCC
Q 046194 721 INKMPITPNSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYAS----GGKWEDVAKARKAMKEAE 796 (934)
Q Consensus 721 ~~~m~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~----~g~~~~a~~~~~~m~~~~ 796 (934)
... +|.++|...++++.+. .++..+..|+.+|.. .++.++|.+++++..+.|
T Consensus 72 --------------------g~~--~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 72 --------------------YVK--KDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp --------------------SSC--CCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred --------------------CCC--ccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 003 4555555555555544 345556666666666 666666666666665544
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0023 Score=69.93 Aligned_cols=113 Identities=12% Similarity=0.123 Sum_probs=74.1
Q ss_pred HhhcCChHHHHHHHHhC------CCCC---C-HHHHHHHHHHHHhccCCCcHHHHHHHHHHHhc-----CCCC---CchH
Q 046194 708 LGRAGELDKIEEFINKM------PITP---N-SLIWRTVLGACCRANCRKTELGRKAANMLFEM-----EPQN---AVNY 769 (934)
Q Consensus 708 l~~~g~~~~A~~~~~~m------~~~p---~-~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~-----~p~~---~~~y 769 (934)
+.+.|++++|++++++. -+.| + ..+++.|..+|... |++++|+..+++++++ .|++ ...|
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~--g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINL--GLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 34455555555555443 0112 2 23566666677666 7777777777766543 2333 4458
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHhCCCcCCCceeEEEeCCEEEEEEcCCCCCCChHHHHHHHHHHHHHHH
Q 046194 770 VLLANMYASGGKWEDVAKARKAMKEAEVKKEAGCSWVTMKDGVHVFVAGDESHPEKDLIYEKLKELNQKMR 840 (934)
Q Consensus 770 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~ 840 (934)
..|+.+|..+|++++|..++++..+.- .+.-| ..||...++...+.+...+|+
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al~i~-~~~lG-----------------~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAFDIM-RVTHG-----------------REHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHH-HHHTC-----------------TTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHH-HHhcC-----------------CCChHHHHHHHHHHHHHHHHh
Confidence 899999999999999999888776421 11111 479999999888888888776
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.57 E-value=0.017 Score=60.31 Aligned_cols=46 Identities=11% Similarity=0.062 Sum_probs=28.5
Q ss_pred CCcccccHHHHHHHH--cCC---hHHHHHHHHHHHHCCCCCCh-hhHHHHHHHH
Q 046194 625 RNVYSWNSMISGYAR--HGH---GDKALTLFSQMKLDGPLPDH-VTFVGVLSAC 672 (934)
Q Consensus 625 ~~~~~~~~li~~~~~--~g~---~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~ 672 (934)
.|...|...+.+... .+. ..+|+.+|++..+ ..|+- ..+..+.-++
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~ 243 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVD 243 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHH
Confidence 466677777765443 333 4789999999998 46773 4444433333
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0057 Score=54.95 Aligned_cols=107 Identities=4% Similarity=-0.113 Sum_probs=80.7
Q ss_pred cCCHHHHHHHhccCCCC-CcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----hCcHHHHHH
Q 046194 609 CGRIDYASRFFDLMPVR-NVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSH----AGLVDEGFK 683 (934)
Q Consensus 609 ~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~ 683 (934)
.++.++|.+.|+...+. +.... |...|...+..++|++.|++..+.| +......|...|.. .++.++|.+
T Consensus 8 ~~d~~~A~~~~~~aa~~g~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELNEMFGC--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTHH--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred ccCHHHHHHHHHHHHcCCCHhhh--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 35678899999877643 33444 6677777788899999999999975 55667777777777 789999999
Q ss_pred HHHHhHHhhCCCCCcccHHHHHHHHhh----cCChHHHHHHHHhC
Q 046194 684 HFKSMSQVYGLIPQLEQFSCMVDLLGR----AGELDKIEEFINKM 724 (934)
Q Consensus 684 ~~~~m~~~~~~~p~~~~y~~li~~l~~----~g~~~~A~~~~~~m 724 (934)
+|+...+. -+...+..|..+|.. .+++++|.+++++.
T Consensus 83 ~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A 123 (138)
T 1klx_A 83 YYSKACGL----NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKA 123 (138)
T ss_dssp HHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHHHcC----CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHH
Confidence 99998773 345667777777777 67777777777765
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0028 Score=69.12 Aligned_cols=61 Identities=16% Similarity=0.128 Sum_probs=41.7
Q ss_pred HHHHHHHHHHhccCCCcHHHHHHHHHHHhc-----CCCC---CchHHHHHHHHHcCCChHHHHHHHHHHHh
Q 046194 732 IWRTVLGACCRANCRKTELGRKAANMLFEM-----EPQN---AVNYVLLANMYASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 732 ~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~-----~p~~---~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 794 (934)
+++.|..+|... |++++|+..+++++++ .|++ ...|..|+.+|..+|++++|..++++..+
T Consensus 342 ~~~nLa~~y~~~--g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 342 MMYQAMGVCLYM--QDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh--cCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 455666666665 6666666666655543 2333 44588899999999999999988887654
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=96.21 E-value=0.01 Score=49.72 Aligned_cols=62 Identities=15% Similarity=0.242 Sum_probs=38.5
Q ss_pred cccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhCcHHHHHHHHHHhHH
Q 046194 627 VYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPD-HVTFVGVLSACSHAGLVDEGFKHFKSMSQ 690 (934)
Q Consensus 627 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 690 (934)
...|..+...|...|++++|+..|++..+. .|+ ...|..+..++...|++++|.+.|++..+
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVET--DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 345556666666666666666666666663 343 44555666666666777777666666654
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=96.20 E-value=0.009 Score=51.44 Aligned_cols=44 Identities=9% Similarity=0.055 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhCcHHHHHHHHHHhHH
Q 046194 645 KALTLFSQMKLDGPLPD-HVTFVGVLSACSHAGLVDEGFKHFKSMSQ 690 (934)
Q Consensus 645 ~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 690 (934)
+|+..|++..+. .|+ ...+..+...+...|++++|+..|+...+
T Consensus 3 ~a~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 47 (115)
T 2kat_A 3 AITERLEAMLAQ--GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALD 47 (115)
T ss_dssp CHHHHHHHHHTT--TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 345555555542 232 33444444455555555555555555544
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=95.93 E-value=0.063 Score=56.01 Aligned_cols=130 Identities=17% Similarity=0.121 Sum_probs=91.3
Q ss_pred CCChhhHHHHHHHHH--hh---CcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHh----hcC-------ChHHHHHHH
Q 046194 659 LPDHVTFVGVLSACS--HA---GLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLG----RAG-------ELDKIEEFI 721 (934)
Q Consensus 659 ~p~~~t~~~ll~a~~--~~---g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~----~~g-------~~~~A~~~~ 721 (934)
+.|...|...+.+.. .. ....+|+.+|++..+ +.|+ ...|..+.-+|. ..+ .+.+|.+-.
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~---lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~ 267 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ---SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNI 267 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHH
Confidence 455677888887643 33 345789999999987 5677 445554333332 111 112233322
Q ss_pred HhCC-CCCCHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHHh
Q 046194 722 NKMP-ITPNSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 722 ~~m~-~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 794 (934)
..+. ...++.++..+...+... |+.+.|...++++++++| +...|..++.++.-.|++++|.+.+++...
T Consensus 268 ~a~~~~~~~a~~~~alal~~l~~--gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~Alr 338 (372)
T 3ly7_A 268 VTLPELNNLSIIYQIKAVSALVK--GKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFN 338 (372)
T ss_dssp HTCGGGTTCHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhcccCCcCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3332 244677888877777777 999999999999999997 467889999999999999999999887764
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=95.87 E-value=0.018 Score=47.72 Aligned_cols=63 Identities=10% Similarity=0.130 Sum_probs=32.5
Q ss_pred HHHHhhcCChHHHHHHHHhC-CCCC-CHH-HHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchH
Q 046194 705 VDLLGRAGELDKIEEFINKM-PITP-NSL-IWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNY 769 (934)
Q Consensus 705 i~~l~~~g~~~~A~~~~~~m-~~~p-~~~-~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y 769 (934)
...+.+.|++++|.+.+++. ...| +.. .|..+...+... |+.+.|...++++++++|+++..+
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~--~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKL--GDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCCcHHHH
Confidence 34455555555555555554 2233 233 455555555555 555555555555555555555444
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=95.76 E-value=0.0031 Score=66.77 Aligned_cols=238 Identities=11% Similarity=0.101 Sum_probs=161.0
Q ss_pred chhHHHHHHHHhhccCChhHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhc
Q 046194 290 MVAVGNGLVNMYAKCGTIDDSRSVFRFMIGKDSVSWNTMISGLDQNGCYEEAIMNFCAMRRDGLMSSNFSLISTLSSCAS 369 (934)
Q Consensus 290 ~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 369 (934)
.+.+|+.|-.++.+.|++.+|++-|- ...|...|..+|....+.|.+++-+.++...++.. -++..=+.++-++++
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyI--kA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ayAk 128 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYI--KADDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAK 128 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSC--CCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHHHHT
T ss_pred CccHHHHHHHHHHccCchHHHHHHHH--hCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHHHHh
Confidence 45567777788888888888887663 34577788899999999999999998887666543 344455678888888
Q ss_pred cCchHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC------------------------CCccc
Q 046194 370 LGWIMLGQQIHGEGLKLGLDSDVSVSNALLSLYADAGYLSRCLKVFFLMPE------------------------HDQVS 425 (934)
Q Consensus 370 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~------------------------~~~~~ 425 (934)
.+++.+-++++ -.||..-.....+-+...|.++.|.-+|..+.. .++.+
T Consensus 129 ~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~kt 201 (624)
T 3lvg_A 129 TNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRT 201 (624)
T ss_dssp SCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCS
T ss_pred hCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhH
Confidence 87765433222 236665666777777888888888888877653 36678
Q ss_pred hHHHHHHHHhCCccHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhcCC-CchhHHHHHHHHH
Q 046194 426 WNSVIGAFADSEALVSEAVKYYLDMRRAGWSPNGVTFINILAAASSFSMGKLGHQVHAQVIKYNVA-NETTIENALLSCY 504 (934)
Q Consensus 426 ~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~-~~~~~~~~li~~~ 504 (934)
|-.+-.+|...+.+ .-|.-.--.+. +.|| .+..++..|...|-+++-..+++.-+ |++ ....+++-|.-.|
T Consensus 202 WKeV~~ACvd~~Ef-rLAqicGLniI---vhad--eL~elv~~YE~~G~f~ELIsLlEagl--glErAHmGmFTELaILY 273 (624)
T 3lvg_A 202 WKEVCFACVDGKEF-RLAQMCGLHIV---VHAD--ELEELINYYQDRGYFEELITMLEAAL--GLERAHMGMFTELAILY 273 (624)
T ss_dssp HHHHTHHHHHSCTT-TTTTHHHHHHH---CCSS--CCSGGGSSSSTTCCCTTSTTTHHHHT--TSTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCchHH-HHHHHhcchhc---ccHH--HHHHHHHHHHhCCCHHHHHHHHHHHh--CCCchhHHHHHHHHHHH
Confidence 88888888888877 54433322222 1122 22334555677777777777666544 333 4566888888888
Q ss_pred HhcCCHHHHHHHHHhhccC---C-------CcchHHHHHHHHHhcCChhHHHH
Q 046194 505 GKCGEMDDCEKIFARMSER---R-------DEVSWNSMISGYIHNELLPKAMN 547 (934)
Q Consensus 505 ~~~g~~~~A~~~~~~~~~~---p-------~~~~~~~li~~~~~~g~~~~A~~ 547 (934)
+|- +.++-.+-++..-.+ | ....|..++-.|++..+++.|..
T Consensus 274 sKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 274 SKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp HSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred Hhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 886 344444444433333 3 55679999999999999997754
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=95.76 E-value=0.028 Score=46.59 Aligned_cols=86 Identities=10% Similarity=0.107 Sum_probs=59.0
Q ss_pred HHHHHHhhCcHHHHHHHHHHhHHhhCCCCC-cc-cHHHHHHHHhhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhc
Q 046194 668 VLSACSHAGLVDEGFKHFKSMSQVYGLIPQ-LE-QFSCMVDLLGRAGELDKIEEFINKM-PITPNS-LIWRTVLGACCRA 743 (934)
Q Consensus 668 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~-~y~~li~~l~~~g~~~~A~~~~~~m-~~~p~~-~~~~~ll~~~~~~ 743 (934)
....+...|++++|.+.|+...+. .|+ .. .|..+..+|.+.|++++|.+.+++. ...|+. ..|. .
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~--------~ 74 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQT---EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQA--------R 74 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH---CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHH--------H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH--------H
Confidence 455677889999999999988773 344 56 7888888999999999999988876 344432 2221 1
Q ss_pred cCCCcHHHHHHHHHHHhcCCCCC
Q 046194 744 NCRKTELGRKAANMLFEMEPQNA 766 (934)
Q Consensus 744 ~~~~~~~a~~~~~~~~~~~p~~~ 766 (934)
+.++.+...++++...+|+++
T Consensus 75 --~~~~~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 75 --KMVMDILNFYNKDMYNQLEHH 95 (99)
T ss_dssp --HHHHHHHHHHCCTTHHHHCCS
T ss_pred --HHHHHHHHHHHHHhccCcccc
Confidence 344555666666666666554
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=95.74 E-value=0.61 Score=39.96 Aligned_cols=140 Identities=11% Similarity=0.009 Sum_probs=97.9
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHH
Q 046194 638 ARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKI 717 (934)
Q Consensus 638 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A 717 (934)
.-.|..++..++..+.... .+..-++-+|.-...+-+-+-..+.++.+-+-|.+.| +|++...
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~--------------C~NlKrV 80 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDK--------------CQNLKSV 80 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGG--------------CSCTHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCcHh--------------hhcHHHH
Confidence 3467788888888887763 3444566666655666677777777777766544433 4444444
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHHhCCC
Q 046194 718 EEFINKMPITPNSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMKEAEV 797 (934)
Q Consensus 718 ~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 797 (934)
..-+-.++. +....+.-+...... |.-+.-..+...++.-+|.+|+...-++++|.+.|...+|.+++++.-++|+
T Consensus 81 i~C~~~~n~--~se~vd~ALd~lv~~--~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 81 VECGVINNT--LNEHVNKALDILVIQ--GKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHTTC--CCHHHHHHHHHHHHT--TCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcc--hHHHHHHHHHHHHHh--ccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 444444321 222334455666667 8888888898888778888899999999999999999999999999998887
Q ss_pred c
Q 046194 798 K 798 (934)
Q Consensus 798 ~ 798 (934)
+
T Consensus 157 k 157 (172)
T 1wy6_A 157 K 157 (172)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=95.72 E-value=0.23 Score=59.53 Aligned_cols=102 Identities=12% Similarity=0.122 Sum_probs=60.8
Q ss_pred HHHhcCCHHHHHHHhccCCCCCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHHHHH
Q 046194 605 MYSKCGRIDYASRFFDLMPVRNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGFKH 684 (934)
Q Consensus 605 ~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 684 (934)
....+|++++|.++.+.+. +...|..+...+.+.|+++.|++.|.++.+ |..+...+...|+.+...++
T Consensus 661 ~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~ 729 (814)
T 3mkq_A 661 LALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTL 729 (814)
T ss_dssp HHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHH
T ss_pred hhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHH
Confidence 3456777777777776653 456777777777778888888777777643 33334444445555554444
Q ss_pred HHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhC
Q 046194 685 FKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKM 724 (934)
Q Consensus 685 ~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m 724 (934)
-+..... ..++.-..+|.+.|++++|.+++.++
T Consensus 730 ~~~a~~~-------~~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 730 AKDAETT-------GKFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHHHHT-------TCHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHc-------CchHHHHHHHHHcCCHHHHHHHHHHc
Confidence 3333221 12334445566667777777766665
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=95.61 E-value=0.23 Score=59.54 Aligned_cols=115 Identities=13% Similarity=0.055 Sum_probs=73.4
Q ss_pred HHHHhcCCHHHHHHHHHhhccCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhchhhHHHHH
Q 046194 502 SCYGKCGEMDDCEKIFARMSERRDEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVATLERGM 581 (934)
Q Consensus 502 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~ 581 (934)
+....+|++++|.++.+.+. +...|..+...+.+.++++.|.+.|.++.. |..+...+...++.+...
T Consensus 660 ~~~l~~~~~~~A~~~~~~~~---~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~ 727 (814)
T 3mkq_A 660 ELALKVGQLTLARDLLTDES---AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLV 727 (814)
T ss_dssp HHHHHHTCHHHHHHHHTTCC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHH
T ss_pred ehhhhcCCHHHHHHHHHhhC---cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHH
Confidence 44567888888888876663 567889999999999999999988887643 223333444455555554
Q ss_pred HHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCCCCcccccHHHHHHHHcCChHHHHHHHHH
Q 046194 582 EVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPVRNVYSWNSMISGYARHGHGDKALTLFSQ 652 (934)
Q Consensus 582 ~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 652 (934)
++-+.+...|. ++.-...|.++|++++|.+++.+ .+++++|+.+-++
T Consensus 728 ~~~~~a~~~~~------~~~A~~~~~~~g~~~~a~~~~~~------------------~~~~~~A~~lA~~ 774 (814)
T 3mkq_A 728 TLAKDAETTGK------FNLAFNAYWIAGDIQGAKDLLIK------------------SQRFSEAAFLGST 774 (814)
T ss_dssp HHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHH------------------TTCHHHHHHHHHH
T ss_pred HHHHHHHHcCc------hHHHHHHHHHcCCHHHHHHHHHH------------------cCChHHHHHHHHH
Confidence 44444444331 13334456667777777666544 4567777766554
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=95.61 E-value=0.036 Score=60.37 Aligned_cols=27 Identities=15% Similarity=0.210 Sum_probs=15.3
Q ss_pred HHHHHHHHHHhccCCCcHHHHHHHHHHHh
Q 046194 732 IWRTVLGACCRANCRKTELGRKAANMLFE 760 (934)
Q Consensus 732 ~~~~ll~~~~~~~~~~~~~a~~~~~~~~~ 760 (934)
+++.|...|... |++++|+..++++++
T Consensus 384 ~l~nLa~~~~~q--g~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 384 MWLKLGRLYMGL--ENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc--cCHHHHHHHHHHHHH
Confidence 455555555555 566666665555544
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.57 E-value=0.061 Score=48.14 Aligned_cols=65 Identities=11% Similarity=-0.036 Sum_probs=38.4
Q ss_pred CCHHHHHHHHHHHHhccCC---CcHHHHHHHHHHHhcC-C-CCCchHHHHHHHHHcCCChHHHHHHHHHHHh
Q 046194 728 PNSLIWRTVLGACCRANCR---KTELGRKAANMLFEME-P-QNAVNYVLLANMYASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 728 p~~~~~~~ll~~~~~~~~~---~~~~a~~~~~~~~~~~-p-~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 794 (934)
++..+...+.+++.+. + ++++|...++.+++.+ | ++...+..|+-.|++.|++++|.+.++.+.+
T Consensus 30 ~~~~~~F~ya~~Lv~S--~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRS--KYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp CCHHHHHHHHHHHHTC--SSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 4555555555555554 4 4456666666666665 4 3355566666666666666666666666553
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=95.45 E-value=0.058 Score=58.81 Aligned_cols=90 Identities=13% Similarity=0.056 Sum_probs=54.8
Q ss_pred HHHHHcCChHHHHHHHHHHHHC---CCCCC----hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhh----C-CCCC-cccH
Q 046194 635 SGYARHGHGDKALTLFSQMKLD---GPLPD----HVTFVGVLSACSHAGLVDEGFKHFKSMSQVY----G-LIPQ-LEQF 701 (934)
Q Consensus 635 ~~~~~~g~~~~A~~l~~~m~~~---g~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~----~-~~p~-~~~y 701 (934)
..+.+.|++++|+.++++..+. -+.|+ ..+++.+..+|...|++++|..++++..+.+ | -.|+ ..+|
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 3445566777777777776642 12233 2346667777777777777777777665432 1 1122 4556
Q ss_pred HHHHHHHhhcCChHHHHHHHHhC
Q 046194 702 SCMVDLLGRAGELDKIEEFINKM 724 (934)
Q Consensus 702 ~~li~~l~~~g~~~~A~~~~~~m 724 (934)
+.|..+|...|++++|+.++++.
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~A 397 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLA 397 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHH
Confidence 66777777777777777666654
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=95.12 E-value=0.05 Score=54.28 Aligned_cols=87 Identities=9% Similarity=0.085 Sum_probs=64.8
Q ss_pred HHHHHHHHhC-CCCCC---HHHHHHHHHHHHhc----cCCCcHHHHHHHHHHHhcCCCC-CchHHHHHHHHHcC-CChHH
Q 046194 715 DKIEEFINKM-PITPN---SLIWRTVLGACCRA----NCRKTELGRKAANMLFEMEPQN-AVNYVLLANMYASG-GKWED 784 (934)
Q Consensus 715 ~~A~~~~~~m-~~~p~---~~~~~~ll~~~~~~----~~~~~~~a~~~~~~~~~~~p~~-~~~y~~l~~~~~~~-g~~~~ 784 (934)
.+|...+++. .+.|+ ...|.+|...|... + |+.+.|++.++++++++|+. ..+++.+++.|+.. |+.++
T Consensus 180 ~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~g-Gd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 180 HAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFG-GGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTT-CCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccC-CCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 3444444443 34554 44566666666551 2 99999999999999999975 99999999999985 99999
Q ss_pred HHHHHHHHHhCCCcCCCc
Q 046194 785 VAKARKAMKEAEVKKEAG 802 (934)
Q Consensus 785 a~~~~~~m~~~~~~~~~~ 802 (934)
+.+.+++......+..|+
T Consensus 259 a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 259 FDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHHcCCCCCCCC
Confidence 999999998876665454
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=93.87 E-value=0.18 Score=42.15 Aligned_cols=68 Identities=9% Similarity=0.051 Sum_probs=45.4
Q ss_pred HHHHHHhhcCChHHHHHHHHhC-----C----CCCCHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHH
Q 046194 703 CMVDLLGRAGELDKIEEFINKM-----P----ITPNSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLL 772 (934)
Q Consensus 703 ~li~~l~~~g~~~~A~~~~~~m-----~----~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l 772 (934)
.|+..+.+.|+++.|...++.. + -.+...++..|..++... |+++.|...++++++++|+++.....+
T Consensus 10 ~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~--g~~~~A~~~~~~al~l~P~~~~~~~n~ 86 (104)
T 2v5f_A 10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQ--GDLDKALLLTKKLLELDPEHQRANGNL 86 (104)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHc--cCHHHHHHHHHHHHhcCCCCHHHHhhH
Confidence 3444444444444444444433 0 123456778888888888 999999999999999999987765444
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=93.45 E-value=0.22 Score=44.53 Aligned_cols=90 Identities=17% Similarity=0.053 Sum_probs=53.7
Q ss_pred hHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhC---cHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHH
Q 046194 643 GDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAG---LVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEE 719 (934)
Q Consensus 643 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g---~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~ 719 (934)
...+.+-|.+..+.|. ++..+...+..++.+.+ ++++|+.+|+...+. . .|+
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-~-~p~---------------------- 68 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-G-SKE---------------------- 68 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-S-CHH----------------------
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-Ccc----------------------
Confidence 3444555555555442 45444444555555555 455666666665553 1 110
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCc
Q 046194 720 FINKMPITPNSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAV 767 (934)
Q Consensus 720 ~~~~m~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 767 (934)
-+...+-.|.-++.+. |+++.|.+.++.+++++|+|..
T Consensus 69 --------~~rd~lY~LAv~~~kl--~~Y~~A~~y~~~lL~ieP~n~Q 106 (152)
T 1pc2_A 69 --------EQRDYVFYLAVGNYRL--KEYEKALKYVRGLLQTEPQNNQ 106 (152)
T ss_dssp --------HHHHHHHHHHHHHHHT--SCHHHHHHHHHHHHHHCTTCHH
T ss_pred --------chHHHHHHHHHHHHHc--cCHHHHHHHHHHHHhcCCCCHH
Confidence 0123344555677777 9999999999999999998643
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=92.77 E-value=0.4 Score=39.06 Aligned_cols=68 Identities=9% Similarity=0.080 Sum_probs=46.6
Q ss_pred CCcccHHHHHHHHhhcCC---hHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCC
Q 046194 696 PQLEQFSCMVDLLGRAGE---LDKIEEFINKM-PITPN-SLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQN 765 (934)
Q Consensus 696 p~~~~y~~li~~l~~~g~---~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~ 765 (934)
+++..+..+..++...++ .++|..++++. ...|+ +..+..+...+... |+++.|...++++++.+|++
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~--g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFIS--FRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHTCCCTT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhhCCCC
Confidence 345666666666654443 67777777776 45554 45556666666677 88888888888888888883
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=92.62 E-value=3.2 Score=41.42 Aligned_cols=111 Identities=9% Similarity=0.077 Sum_probs=74.7
Q ss_pred cCCHHHHHHHhccCCCCCcc--cccHHHH-HHHHc--CC------hHHHHHHHHHHHHCCCCCC---hhhHHHHHHHHHh
Q 046194 609 CGRIDYASRFFDLMPVRNVY--SWNSMIS-GYARH--GH------GDKALTLFSQMKLDGPLPD---HVTFVGVLSACSH 674 (934)
Q Consensus 609 ~g~~~~A~~~~~~~~~~~~~--~~~~li~-~~~~~--g~------~~~A~~l~~~m~~~g~~p~---~~t~~~ll~a~~~ 674 (934)
.|+..+-.+.+......|+. .|..++. .++.. |. ..+|...+++..+ +.|+ ...|..+...|..
T Consensus 134 ~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~ 211 (301)
T 3u64_A 134 SGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAA 211 (301)
T ss_dssp SSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHH
T ss_pred hcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHh
Confidence 34444444555555543332 5666554 33332 32 4567777888877 5676 4567777777777
Q ss_pred -----hCcHHHHHHHHHHhHHhhCCCCC--cccHHHHHHHHhhc-CChHHHHHHHHhC
Q 046194 675 -----AGLVDEGFKHFKSMSQVYGLIPQ--LEQFSCMVDLLGRA-GELDKIEEFINKM 724 (934)
Q Consensus 675 -----~g~~~~a~~~~~~m~~~~~~~p~--~~~y~~li~~l~~~-g~~~~A~~~~~~m 724 (934)
-|+.++|.+.|++..+ +.|+ ..++....+.|++. |+.++|.+.+++.
T Consensus 212 vPp~~gGd~ekA~~~ferAL~---LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kA 266 (301)
T 3u64_A 212 APESFGGGMEKAHTAFEHLTR---YCSAHDPDHHITYADALCIPLNNRAGFDEALDRA 266 (301)
T ss_dssp SCTTTTCCHHHHHHHHHHHHH---HCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred CCCccCCCHHHHHHHHHHHHH---hCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 4889999999888877 5563 77888888888884 8888888888876
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.40 E-value=0.74 Score=53.18 Aligned_cols=55 Identities=16% Similarity=0.059 Sum_probs=49.4
Q ss_pred HHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHH
Q 046194 736 VLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAM 792 (934)
Q Consensus 736 ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m 792 (934)
-..-|... |+++.|..+++++...-|.+..+|..|+.+|...|+|+.|.-.+..+
T Consensus 343 Qa~FLl~K--~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 343 QTNFLLNR--GDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHT--TCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHhcc--CcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 34455666 99999999999999999999999999999999999999999887766
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.39 E-value=1.5 Score=40.19 Aligned_cols=106 Identities=14% Similarity=0.112 Sum_probs=67.4
Q ss_pred HHHhcCCHHHHHHHhccCCCCCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHHHHH
Q 046194 605 MYSKCGRIDYASRFFDLMPVRNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGFKH 684 (934)
Q Consensus 605 ~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 684 (934)
....+|+++.|.++.+.+ .+...|..|......+|+++-|.+.|.+..+ |..+.--|...|+.+.-.++
T Consensus 14 LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kl 82 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKM 82 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHH
Confidence 345678888888777665 3566788888888888888888888877543 33344445556666555544
Q ss_pred HHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhCCCCC
Q 046194 685 FKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKMPITP 728 (934)
Q Consensus 685 ~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~~~p 728 (934)
-+....+ .-++.-...+.-.|+++++.+++.+.+.-|
T Consensus 83 a~iA~~~-------g~~n~af~~~l~lGdv~~~i~lL~~~~r~~ 119 (177)
T 3mkq_B 83 QNIAQTR-------EDFGSMLLNTFYNNSTKERSSIFAEGGSLP 119 (177)
T ss_dssp HHHHHHT-------TCHHHHHHHHHHHTCHHHHHHHHHHTTCHH
T ss_pred HHHHHHC-------ccHHHHHHHHHHcCCHHHHHHHHHHCCChH
Confidence 3333221 124555556666788888888887775433
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.77 E-value=9.7 Score=34.84 Aligned_cols=100 Identities=12% Similarity=0.060 Sum_probs=70.9
Q ss_pred hchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCCCCcccccHHHHHHHHcCChHHHHHHHH
Q 046194 572 ASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPVRNVYSWNSMISGYARHGHGDKALTLFS 651 (934)
Q Consensus 572 ~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 651 (934)
.+.|+++.|.++...+ .+...|..|.+.....|+++-|.+.|..... +..+.-.|...|+.++-..+-+
T Consensus 16 L~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-----~~~L~~Ly~~tg~~e~L~kla~ 84 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS-----FDKLSFLYLVTGDVNKLSKMQN 84 (177)
T ss_dssp HHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-----HHHHHHHHHHHTCHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC-----HHHHHHHHHHhCCHHHHHHHHH
Confidence 4567777777765544 2567888899999999999999999888763 4456666777888877766666
Q ss_pred HHHHCCCCCChhhHHHHHHHHHhhCcHHHHHHHHHHh
Q 046194 652 QMKLDGPLPDHVTFVGVLSACSHAGLVDEGFKHFKSM 688 (934)
Q Consensus 652 ~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 688 (934)
.....| -++.....+...|+++++.++|.+.
T Consensus 85 iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 85 IAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 655554 2444445566789999998887554
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=90.44 E-value=17 Score=37.13 Aligned_cols=110 Identities=15% Similarity=0.074 Sum_probs=70.2
Q ss_pred HHHHHhhccCChhHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHH----HHHHHCCCCCChhhHHHHHHHhhccC
Q 046194 296 GLVNMYAKCGTIDDSRSVFRFMIGKDSVSWNTMISGLDQNGCYEEAIMNF----CAMRRDGLMSSNFSLISTLSSCASLG 371 (934)
Q Consensus 296 ~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~p~~~t~~~ll~a~~~~~ 371 (934)
++..-|.+.+++++|.+++.. -...+.+.|+...|-++- +-+.+.++++|..+...++..+....
T Consensus 40 Ti~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~ 108 (336)
T 3lpz_A 40 LVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQ 108 (336)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSC
T ss_pred HHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Confidence 344568888899999887632 233456667766555544 55566788888888777777666544
Q ss_pred c--h---HHHHHHHHHHhhhC--CCCchhHHHHHHHHHHhcCChHHHHHHHh
Q 046194 372 W--I---MLGQQIHGEGLKLG--LDSDVSVSNALLSLYADAGYLSRCLKVFF 416 (934)
Q Consensus 372 ~--~---~~a~~i~~~~~~~g--~~~~~~~~~~li~~y~~~g~~~~A~~~f~ 416 (934)
. . ........+-.+.| ..-|+.....+...|.+.+++.+|..-|-
T Consensus 109 ~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i 160 (336)
T 3lpz_A 109 PGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV 160 (336)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 2 1 12223333334444 34567777888888888888888877764
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=89.73 E-value=1.8 Score=37.14 Aligned_cols=92 Identities=17% Similarity=0.007 Sum_probs=53.0
Q ss_pred HHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHH---HHHHHHhC-CCC-C-C-HHHHHHHHHHHHhc
Q 046194 671 ACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDK---IEEFINKM-PIT-P-N-SLIWRTVLGACCRA 743 (934)
Q Consensus 671 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~---A~~~~~~m-~~~-p-~-~~~~~~ll~~~~~~ 743 (934)
.-.....+..+.+-|...... +. |+..+--.+..+|.+..+..+ ++.++++. ... | + ....-.|.-++.+.
T Consensus 10 ~~~~~~~l~~~~~~y~~e~~~-~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~ykl 87 (126)
T 1nzn_A 10 ELVSVEDLLKFEKKFQSEKAA-GS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRL 87 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-SC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHHHHHHHHhcc-CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Confidence 333344455555555555442 22 666666666677777765555 66666665 222 3 1 12233444466666
Q ss_pred cCCCcHHHHHHHHHHHhcCCCCC
Q 046194 744 NCRKTELGRKAANMLFEMEPQNA 766 (934)
Q Consensus 744 ~~~~~~~a~~~~~~~~~~~p~~~ 766 (934)
|+++.|.+..+.+++.+|+|.
T Consensus 88 --g~Y~~A~~~~~~lL~~eP~n~ 108 (126)
T 1nzn_A 88 --KEYEKALKYVRGLLQTEPQNN 108 (126)
T ss_dssp --TCHHHHHHHHHHHHHHCTTCH
T ss_pred --hhHHHHHHHHHHHHHhCCCCH
Confidence 777777777777777777753
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=89.42 E-value=0.68 Score=38.58 Aligned_cols=65 Identities=11% Similarity=0.079 Sum_probs=37.6
Q ss_pred HHHHHHHHHhhCcHHHHHHHHHHhHHhhCC-----CCCcccHHHHHHHHhhcCChHHHHHHHHhC-CCCCC
Q 046194 665 FVGVLSACSHAGLVDEGFKHFKSMSQVYGL-----IPQLEQFSCMVDLLGRAGELDKIEEFINKM-PITPN 729 (934)
Q Consensus 665 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~-----~p~~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p~ 729 (934)
...+...+...|+++.|...|+...+...- .+....+..|..+|.+.|++++|...+++. .+.|+
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~ 78 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE 78 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Confidence 334555566666666666666665553211 122455666667777777777777777665 34554
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=88.89 E-value=6.5 Score=34.31 Aligned_cols=67 Identities=9% Similarity=0.003 Sum_probs=33.5
Q ss_pred CCHHHHHHHHHHHHhcc-CCCcHHHHHHHHHHHhcCCC-CCchHHHHHHHHHcCCChHHHHHHHHHHHh
Q 046194 728 PNSLIWRTVLGACCRAN-CRKTELGRKAANMLFEMEPQ-NAVNYVLLANMYASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 728 p~~~~~~~ll~~~~~~~-~~~~~~a~~~~~~~~~~~p~-~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 794 (934)
|+..+--.+.+++.+.. ..+..+|..+++.++.-+|. .-.....|+-.+++.|++++|.+..+.+.+
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 44444444444444431 02334555555555555553 233444556666666666666666555553
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=88.78 E-value=4 Score=34.95 Aligned_cols=88 Identities=14% Similarity=0.032 Sum_probs=58.8
Q ss_pred HcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHH---HHHHHHHhHHhhCCCC--CcccHHHHHHHHhhcCC
Q 046194 639 RHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDE---GFKHFKSMSQVYGLIP--QLEQFSCMVDLLGRAGE 713 (934)
Q Consensus 639 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~---a~~~~~~m~~~~~~~p--~~~~y~~li~~l~~~g~ 713 (934)
.......+.+-|.+....|. |+..+-..+..++.+.....+ |+.+++...+. -.| .....-.|.-++.|.|+
T Consensus 13 ~~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~--~~p~~~Rd~lY~LAvg~yklg~ 89 (126)
T 1nzn_A 13 SVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK--GSKEEQRDYVFYLAVGNYRLKE 89 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT--SCHHHHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHhhh
Confidence 33344556666666666553 666665567777777776555 88888887663 224 24445566778889999
Q ss_pred hHHHHHHHHhC-CCCCC
Q 046194 714 LDKIEEFINKM-PITPN 729 (934)
Q Consensus 714 ~~~A~~~~~~m-~~~p~ 729 (934)
+++|.+.++.+ .++|+
T Consensus 90 Y~~A~~~~~~lL~~eP~ 106 (126)
T 1nzn_A 90 YEKALKYVRGLLQTEPQ 106 (126)
T ss_dssp HHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHhCCC
Confidence 99999988887 55664
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=87.18 E-value=14 Score=31.88 Aligned_cols=68 Identities=6% Similarity=-0.031 Sum_probs=41.8
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhchhhHHHHHHHHHHHHHhCCC
Q 046194 525 DEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVATLERGMEVHACGVRACLE 593 (934)
Q Consensus 525 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~ 593 (934)
+....+..++.....|+-++-.+++.++.. +.+|+...+..+..||.+.|+..++.+++.++-+.|++
T Consensus 90 ~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 90 LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 334445555666666666666666666433 24566666666677777777777777777766666653
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=86.86 E-value=13 Score=40.21 Aligned_cols=94 Identities=9% Similarity=0.128 Sum_probs=66.5
Q ss_pred cHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-----hhHHHHHHHHHhhCcHHHHHHHHHHhHHh-hCCCCC----ccc
Q 046194 631 NSMISGYARHGHGDKALTLFSQMKLDGPLPDH-----VTFVGVLSACSHAGLVDEGFKHFKSMSQV-YGLIPQ----LEQ 700 (934)
Q Consensus 631 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~-~~~~p~----~~~ 700 (934)
..|...|...|++.+|..++.++...-...+. ..+...+..|...+++..|..++.++... +...+. ...
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 35677888889999999998887653122222 23555666788999999999998887532 122222 456
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhC
Q 046194 701 FSCMVDLLGRAGELDKIEEFINKM 724 (934)
Q Consensus 701 y~~li~~l~~~g~~~~A~~~~~~m 724 (934)
|.+++..+...+++.+|...|.+.
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHH
Confidence 788888899999999988777665
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=85.62 E-value=65 Score=38.12 Aligned_cols=215 Identities=8% Similarity=-0.018 Sum_probs=99.1
Q ss_pred HHHhcCCHHHHHHHHHhhccC---CCcc--hHHHHHHHHHhcCChhHHHHHHHHHHHcCC--CCC---H-hHHHHHH-HH
Q 046194 503 CYGKCGEMDDCEKIFARMSER---RDEV--SWNSMISGYIHNELLPKAMNLVWFMMQRGQ--RLD---H-FTFATVL-SA 570 (934)
Q Consensus 503 ~~~~~g~~~~A~~~~~~~~~~---p~~~--~~~~li~~~~~~g~~~~A~~l~~~m~~~g~--~p~---~-~t~~~ll-~a 570 (934)
+....|+.+++..+++..... .+.. .-..+.-|....|..++++.++.......- .-+ . +...+.+ -+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 345667777777777766542 1111 122233455666666677777766554311 000 1 1111111 11
Q ss_pred Hhchhh-HHHHHHHHHHHHHhCCCCcH--hHHHHHHHHHHhcCCHHHHHHHhccCCC-CCcccc--cHHHHHHHHcCChH
Q 046194 571 CASVAT-LERGMEVHACGVRACLEFDV--VIGSALVDMYSKCGRIDYASRFFDLMPV-RNVYSW--NSMISGYARHGHGD 644 (934)
Q Consensus 571 ~~~~~~-~~~a~~i~~~~~~~~~~~~~--~~~~~li~~y~~~g~~~~A~~~~~~~~~-~~~~~~--~~li~~~~~~g~~~ 644 (934)
.+-.|. -+++...+..++...- +.. ...-+|.-.|.-.|+-+....++..+.+ .+.... -++.-|+...|+.+
T Consensus 463 la~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e 541 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQE 541 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGG
T ss_pred HHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChH
Confidence 111221 1233333333333211 111 1122333445566776666666654332 122222 22333444678888
Q ss_pred HHHHHHHHHHHCCCCCCh-hhHHH---HHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHH
Q 046194 645 KALTLFSQMKLDGPLPDH-VTFVG---VLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEF 720 (934)
Q Consensus 645 ~A~~l~~~m~~~g~~p~~-~t~~~---ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~ 720 (934)
.+..+.+.+... +|. +-|.. +.-+|+..|+.....++++.+.++ ...+......+.-++.-.|+.+.+..+
T Consensus 542 ~~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~v~rl 616 (963)
T 4ady_A 542 LADDLITKMLAS---DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTTVPRI 616 (963)
T ss_dssp GGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSSHHHH
T ss_pred HHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHHHHHH
Confidence 888888877763 332 23332 333566777877777787777653 222222222222233334554444555
Q ss_pred HHh
Q 046194 721 INK 723 (934)
Q Consensus 721 ~~~ 723 (934)
++.
T Consensus 617 v~~ 619 (963)
T 4ady_A 617 VQL 619 (963)
T ss_dssp TTT
T ss_pred HHH
Confidence 443
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=85.42 E-value=34 Score=34.69 Aligned_cols=110 Identities=9% Similarity=0.046 Sum_probs=70.7
Q ss_pred HHHHHhhccCChhHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHH----HHHHHHCCCCCChhhHHHHHHHhhccC
Q 046194 296 GLVNMYAKCGTIDDSRSVFRFMIGKDSVSWNTMISGLDQNGCYEEAIMN----FCAMRRDGLMSSNFSLISTLSSCASLG 371 (934)
Q Consensus 296 ~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~p~~~t~~~ll~a~~~~~ 371 (934)
++..-|.+.+++++|.+++.. -...+.+.|+...|-++ .+...+.+++++......++..+....
T Consensus 38 tl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p 106 (312)
T 2wpv_A 38 TIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELD 106 (312)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCC
Confidence 344567788888888887642 23345566776665554 455556678888877777776655432
Q ss_pred -----chHHHHHHHHHHhhhC--CCCchhHHHHHHHHHHhcCChHHHHHHHh
Q 046194 372 -----WIMLGQQIHGEGLKLG--LDSDVSVSNALLSLYADAGYLSRCLKVFF 416 (934)
Q Consensus 372 -----~~~~a~~i~~~~~~~g--~~~~~~~~~~li~~y~~~g~~~~A~~~f~ 416 (934)
..+..........+.| ..-|+.....+...|.+.|++.+|..-|-
T Consensus 107 ~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 107 PSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp TTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 2233333444444443 23477788888888999998888887765
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=85.04 E-value=5 Score=35.39 Aligned_cols=52 Identities=6% Similarity=0.013 Sum_probs=31.8
Q ss_pred CChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCC
Q 046194 712 GELDKIEEFINKM-P-ITPNSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQN 765 (934)
Q Consensus 712 g~~~~A~~~~~~m-~-~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~ 765 (934)
++.++|.++|+.+ . .+-=+.+|-....-=.++ |++..|.++..+++.+.|..
T Consensus 74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRq--gnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQ--GNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTTCBC
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--ccHHHHHHHHHHHhccCCCc
Confidence 4555555555554 0 000155665555555555 88888888888888887765
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=84.46 E-value=49 Score=35.72 Aligned_cols=315 Identities=9% Similarity=-0.004 Sum_probs=151.3
Q ss_pred CChhHHHHHHHHHHHC-----CCCCChhhHHHHHHHhhccCchHHHHHHHHHHhh-hCCCCchh--HHHHHHHHHHhcCC
Q 046194 336 GCYEEAIMNFCAMRRD-----GLMSSNFSLISTLSSCASLGWIMLGQQIHGEGLK-LGLDSDVS--VSNALLSLYADAGY 407 (934)
Q Consensus 336 g~~~~A~~~~~~m~~~-----g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~g~~~~~~--~~~~li~~y~~~g~ 407 (934)
|++++|++.+..+.+. +..-.......++..|...++++...+....+.+ +|..+... ..+.+++.......
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~ 109 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS 109 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence 6788999888776543 2333445577778888888888877665555443 34322221 12222333322332
Q ss_pred hH--HHHHHHhhCCCC-Cccc---------hHHHHHHHHhCCccHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhccCCc
Q 046194 408 LS--RCLKVFFLMPEH-DQVS---------WNSVIGAFADSEALVSEAVKYYLDMRRAGWSPNGVTFINILAAASSFSMG 475 (934)
Q Consensus 408 ~~--~A~~~f~~~~~~-~~~~---------~~~li~~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 475 (934)
.+ .-..+.+....- +-.. ...|...|-..|++ .+|.+++.++...-...+....
T Consensus 110 ~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~-~eA~~iL~~l~~Et~~~~~~~~------------- 175 (445)
T 4b4t_P 110 LDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKI-DEAADILCELQVETYGSMEMSE------------- 175 (445)
T ss_dssp THHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCH-HHHHHHHHHHHHHHCSSSCHHH-------------
T ss_pred hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCH-HHHHHHHHHHHHHHHhcccHHH-------------
Confidence 22 122222222211 1111 13345556666666 6666666665532111111100
Q ss_pred hHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccC----C-C----cchHHHHHHHHHhcCChhHHH
Q 046194 476 KLGHQVHAQVIKYNVANETTIENALLSCYGKCGEMDDCEKIFARMSER----R-D----EVSWNSMISGYIHNELLPKAM 546 (934)
Q Consensus 476 ~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----p-~----~~~~~~li~~~~~~g~~~~A~ 546 (934)
-..++...+..|...+++..|..++..+..+ + + ..-+..++..+...+++.+|.
T Consensus 176 -----------------kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~ 238 (445)
T 4b4t_P 176 -----------------KIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVA 238 (445)
T ss_dssp -----------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHH
T ss_pred -----------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 0123344556677777777777776665321 1 1 123455566666777777777
Q ss_pred HHHHHHHHc-CCCCCHhHHHHHHH-----HHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhc--CCHHHHHHH
Q 046194 547 NLVWFMMQR-GQRLDHFTFATVLS-----ACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKC--GRIDYASRF 618 (934)
Q Consensus 547 ~l~~~m~~~-g~~p~~~t~~~ll~-----a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~--g~~~~A~~~ 618 (934)
+.|.+.... .+.-|...+..++. ........+.. .+.....+..--++...+..|+.+|... .+++.+.+.
T Consensus 239 ~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~-~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~ 317 (445)
T 4b4t_P 239 QYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQN-DLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKT 317 (445)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTH-HHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHH
T ss_pred HHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHH-HHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHH
Confidence 777766442 11112221111111 11111111111 1222222222234677788888888764 467888888
Q ss_pred hccCCCCCcccccHHHHHHHHcCChHHHHHHHHHHHHCCC----CC-ChhhHHHHHHHHHhhCcHHHHHHHHHHhHHh
Q 046194 619 FDLMPVRNVYSWNSMISGYARHGHGDKALTLFSQMKLDGP----LP-DHVTFVGVLSACSHAGLVDEGFKHFKSMSQV 691 (934)
Q Consensus 619 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~----~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 691 (934)
|.....++...... .+.......+.+.+.+.++ +| +.+++..+...+. =..+++..+...|...
T Consensus 318 ~~~~L~~~~~~~~~-------~~~~~~~~~L~~~v~ehnl~~i~k~Ys~I~l~~la~lL~--l~~~evE~~ls~mI~~ 386 (445)
T 4b4t_P 318 YEPVLNEDDLAFGG-------EANKHHWEDLQKRVIEHNLRVISEYYSRITLLRLNELLD--LTESQTETYISDLVNQ 386 (445)
T ss_dssp TCSSTTTCCSSCCC-------SCSSHHHHHHHHHHHHHHHHHHHHHEEEEEHHHHHHHHT--SCHHHHHHHHHHHHHH
T ss_pred HHHHhcccchhhhc-------chhhHHHHHHHHHHHHHHHHHHHHHhceeeHHHHHHHhC--cCHHHHHHHHHHHHHC
Confidence 88776554432110 0000011122222222211 12 3445555544432 2477888888888775
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=84.43 E-value=37 Score=34.36 Aligned_cols=167 Identities=7% Similarity=0.026 Sum_probs=95.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhccCCCcchHHHHHHHHHhcCChhHHHHH----HHHHHHcCCCCCHhHHHHHHHHHhc
Q 046194 498 NALLSCYGKCGEMDDCEKIFARMSERRDEVSWNSMISGYIHNELLPKAMNL----VWFMMQRGQRLDHFTFATVLSACAS 573 (934)
Q Consensus 498 ~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l----~~~m~~~g~~p~~~t~~~ll~a~~~ 573 (934)
.++..-|.+.+++++|.+++..-.. .+.+.|+...|-++ .+-..+.+++++..+...++..+..
T Consensus 37 Rtl~~Ry~~~~~~~eAidlL~~ga~------------~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~ 104 (312)
T 2wpv_A 37 RTIANRYVRSKSYEHAIELISQGAL------------SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAE 104 (312)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH------------HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHH------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 4566678888899988888654322 24455665555444 3444456778887777777766554
Q ss_pred hh-----hHHHHHHHHHHHHHhCC--CCcHhHHHHHHHHHHhcCCHHHHHHHhccCCCCCcccccHHHHHHHHc---CCh
Q 046194 574 VA-----TLERGMEVHACGVRACL--EFDVVIGSALVDMYSKCGRIDYASRFFDLMPVRNVYSWNSMISGYARH---GHG 643 (934)
Q Consensus 574 ~~-----~~~~a~~i~~~~~~~~~--~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~---g~~ 643 (934)
.. +..-..+......+.|- .-|+.....+...|.+.|++.+|+.-|-.-...|...+..|+.-+... |..
T Consensus 105 ~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~ 184 (312)
T 2wpv_A 105 LDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIED 184 (312)
T ss_dssp CCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCH
T ss_pred CCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCc
Confidence 32 11222223333333332 237888889999999999999999877532222333333333333322 222
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHHHHHHHHhHHh
Q 046194 644 DKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGFKHFKSMSQV 691 (934)
Q Consensus 644 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 691 (934)
.++ |...-..++ -|.-.|++..|..+|+...+.
T Consensus 185 ~e~--------------dlf~~RaVL-~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 185 STV--------------AEFFSRLVF-NYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp HHH--------------HHHHHHHHH-HHHHTTBHHHHHHHHHHHHHH
T ss_pred chH--------------HHHHHHHHH-HHHHhcCHHHHHHHHHHHHHH
Confidence 221 111111122 244568899999988877654
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=83.88 E-value=41 Score=34.36 Aligned_cols=166 Identities=14% Similarity=0.072 Sum_probs=93.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhccCCCcchHHHHHHHHHhcCChhHHHHHH----HHHHHcCCCCCHhHHHHHHHHHhc
Q 046194 498 NALLSCYGKCGEMDDCEKIFARMSERRDEVSWNSMISGYIHNELLPKAMNLV----WFMMQRGQRLDHFTFATVLSACAS 573 (934)
Q Consensus 498 ~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~----~~m~~~g~~p~~~t~~~ll~a~~~ 573 (934)
.++..-|.+.+++++|.+++-.-.. .+.+.|+...|-++- +-..+.++++|..+...++..+..
T Consensus 39 RTi~~Ry~~~k~y~eAidLL~~GA~------------~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~ 106 (336)
T 3lpz_A 39 RLVAARYSKQGNWAAAVDILASVSQ------------TLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRL 106 (336)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH------------HHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhcCHHHHHHHHHHHHH------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 4566668889999999887654322 244456555544443 444456778887777777776655
Q ss_pred hhhH--H---HHHHHHHHHHHhCC--CCcHhHHHHHHHHHHhcCCHHHHHHHhccCCCCCcccccHHHHHHHHcCChHHH
Q 046194 574 VATL--E---RGMEVHACGVRACL--EFDVVIGSALVDMYSKCGRIDYASRFFDLMPVRNVYSWNSMISGYARHGHGDKA 646 (934)
Q Consensus 574 ~~~~--~---~a~~i~~~~~~~~~--~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 646 (934)
...- + -..+....-.+.|- .-|+.....+...|.+.+++.+|+.-|-.-.++....+..|+.-+...+...
T Consensus 107 ~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~-- 184 (336)
T 3lpz_A 107 FQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESH-- 184 (336)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGG--
T ss_pred CCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCc--
Confidence 4421 1 11222223333342 3378888889999999999999998874322222234443333333222111
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHHHHHHHHhHH
Q 046194 647 LTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGFKHFKSMSQ 690 (934)
Q Consensus 647 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 690 (934)
.+|...-..++ -|.-.+++..|..+|+...+
T Consensus 185 ------------e~dlfiaRaVL-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 185 ------------TAPLYCARAVL-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp ------------GHHHHHHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred ------------cHHHHHHHHHH-HHHHhCCHHHHHHHHHHHHH
Confidence 11111222222 35556788888887777665
|
| >2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A | Back alignment and structure |
|---|
Probab=83.50 E-value=37 Score=38.48 Aligned_cols=40 Identities=18% Similarity=0.169 Sum_probs=25.8
Q ss_pred HHHHHhhccCChhHHHHHHhcCCC---CCcccHHHHHHHHHhC
Q 046194 296 GLVNMYAKCGTIDDSRSVFRFMIG---KDSVSWNTMISGLDQN 335 (934)
Q Consensus 296 ~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~ 335 (934)
++|--+.+||++++|.++.++... .-...+-..+..|+.+
T Consensus 157 a~IyY~LR~G~~~~A~e~~~~~~~~~~~~d~~F~~~l~~~~~s 199 (661)
T 2qx5_A 157 ALIFYLLRAGLIKEALQVLVENKANIKKVEQSFLTYFKAYASS 199 (661)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHTGGGC-----CHHHHHHHC---
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhhHhhhhHHHHHHHHHHHhC
Confidence 456677899999999999877642 2224677777777743
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=81.25 E-value=9.7 Score=30.55 Aligned_cols=86 Identities=15% Similarity=0.106 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCCCCcccccHHHHHHHHcCChHHHHHHHHHHHHC
Q 046194 577 LERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPVRNVYSWNSMISGYARHGHGDKALTLFSQMKLD 656 (934)
Q Consensus 577 ~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 656 (934)
.++|..|-+.+...+. ...+--.-+..+...|++++|..+.+.+..||+..|-+|-. .+.|..+++..-+.++..+
T Consensus 22 HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~s 97 (115)
T 2uwj_G 22 HEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGGS 97 (115)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhC
Confidence 4455555555444433 22222222334668899999999999999999999977654 4788888888888888887
Q ss_pred CCCCChhhHHH
Q 046194 657 GPLPDHVTFVG 667 (934)
Q Consensus 657 g~~p~~~t~~~ 667 (934)
| .|....|..
T Consensus 98 g-~p~~q~Fa~ 107 (115)
T 2uwj_G 98 S-DPALADFAA 107 (115)
T ss_dssp S-SHHHHHHHH
T ss_pred C-CHHHHHHHH
Confidence 7 666555543
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=80.78 E-value=10 Score=30.47 Aligned_cols=86 Identities=13% Similarity=0.079 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCCCCcccccHHHHHHHHcCChHHHHHHHHHHHHC
Q 046194 577 LERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPVRNVYSWNSMISGYARHGHGDKALTLFSQMKLD 656 (934)
Q Consensus 577 ~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 656 (934)
.++|..|-+.+...+. ...+--.-+..+...|++++|..+.+.+..||+..|-+|-. .+.|..+++..-+.++..+
T Consensus 23 HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~s 98 (116)
T 2p58_C 23 HEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLARS 98 (116)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhC
Confidence 4455555555444433 22222222334568899999999999999999999977654 4778888888888888877
Q ss_pred CCCCChhhHHH
Q 046194 657 GPLPDHVTFVG 667 (934)
Q Consensus 657 g~~p~~~t~~~ 667 (934)
| .|....|..
T Consensus 99 g-~p~~q~Fa~ 108 (116)
T 2p58_C 99 Q-DPRIQTFVN 108 (116)
T ss_dssp C-CHHHHHHHH
T ss_pred C-CHHHHHHHH
Confidence 6 565555543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 934 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 1e-05 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.2 bits (108), Expect = 1e-05
Identities = 46/360 (12%), Positives = 109/360 (30%), Gaps = 17/360 (4%)
Query: 442 EAVKYYLDMRRAGWSPNGVTFINILAAASSFSMGKLGH--QVHAQVIKYNVANETTIENA 499
A ++ + + R P+ + +L++ F +L IK N N
Sbjct: 17 AAERHCMQLWRQ--EPDNTGVLLLLSSIH-FQCRRLDRSAHFSTLAIKQNPLLAEAYSN- 72
Query: 500 LLSCYGKCGEMDDCEKIFARMSERRDEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRL 559
L + Y + G++ + + + + + + + ++
Sbjct: 73 LGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP 132
Query: 560 DHFTFATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFF 619
D + + L + V S L +++ G I A F
Sbjct: 133 DLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHF 192
Query: 620 DL---MPVRNVYSWNSMISGYARHGHGDKALTLFSQM-KLDGPLPDHVTFVGVLSACSHA 675
+ + + ++ ++ + D+A+ + + L +
Sbjct: 193 EKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLAC--VYYEQ 250
Query: 676 GLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKMPITPNSLIWRT 735
GL+D ++ ++ P + + + L G + + E+ N +
Sbjct: 251 GLIDLAIDTYRRAIELQPHFPDA--YCNLANALKEKGSVAEAEDCYNTALRLCPTHADSL 308
Query: 736 VLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMKEA 795
A + E + E+ P+ A + LA++ GK + +A KEA
Sbjct: 309 NNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQ---EALMHYKEA 365
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 934 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.83 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.82 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.35 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.35 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 98.82 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.82 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.74 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.73 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 98.72 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.67 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.65 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.55 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.52 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.46 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.33 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.29 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.25 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.2 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.17 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.1 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.1 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.08 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.05 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.05 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.03 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.96 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.93 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.93 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.85 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.73 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.68 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.67 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.64 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.61 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.59 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.57 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.55 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.54 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.53 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.47 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.33 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.21 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.16 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.14 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.03 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 96.81 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.74 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.74 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.69 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 96.42 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 96.4 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.33 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.32 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.18 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 94.3 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 91.22 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 89.1 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 87.74 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 86.57 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 85.56 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 83.96 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 80.99 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.83 E-value=6.8e-18 Score=183.57 Aligned_cols=370 Identities=10% Similarity=0.032 Sum_probs=253.9
Q ss_pred HhhccCchHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCCC---CCccchHHHHHHHHhCCccHHH
Q 046194 366 SCASLGWIMLGQQIHGEGLKLGLDSDVSVSNALLSLYADAGYLSRCLKVFFLMPE---HDQVSWNSVIGAFADSEALVSE 442 (934)
Q Consensus 366 a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~~ 442 (934)
...+.|+++.|.+++..+++.. +.+...+..+...|.+.|++++|...|++..+ .+..+|..+...|.+.|++ ++
T Consensus 8 ~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~-~~ 85 (388)
T d1w3ba_ 8 REYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL-QE 85 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH-HH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhccc-cc
Confidence 3445566777777666666543 23445566666666666666666666665432 2344555566666666666 66
Q ss_pred HHHHHHHHHHcCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhcc
Q 046194 443 AVKYYLDMRRAGWSPNGVTFINILAAASSFSMGKLGHQVHAQVIKYNVANETTIENALLSCYGKCGEMDDCEKIFARMSE 522 (934)
Q Consensus 443 A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 522 (934)
|+..+........ .... ............+....+.........
T Consensus 86 A~~~~~~~~~~~~-----------------------------------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (388)
T d1w3ba_ 86 AIEHYRHALRLKP-----------------------------------DFID-GYINLAAALVAAGDMEGAVQAYVSALQ 129 (388)
T ss_dssp HHHHHHHHHHHCT-----------------------------------TCHH-HHHHHHHHHHHHSCSSHHHHHHHHHHH
T ss_pred ccccccccccccc-----------------------------------cccc-ccccccccccccccccccccccccccc
Confidence 6666665554321 1111 111222222222222222222222211
Q ss_pred -C-CCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHH
Q 046194 523 -R-RDEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVATLERGMEVHACGVRACLEFDVVIGS 600 (934)
Q Consensus 523 -~-p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~ 600 (934)
. .....+..........+....+...+.+..... +-+...+..+...+...+..+.|...+..+++.. +.+...+.
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~ 207 (388)
T d1w3ba_ 130 YNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYI 207 (388)
T ss_dssp HCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred cccccccccccccccccccchhhhhHHHHHHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHH
Confidence 1 133344444555555666666666666655532 2234555555666667777777777777766643 22566777
Q ss_pred HHHHHHHhcCCHHHHHHHhccCCC---CCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhC
Q 046194 601 ALVDMYSKCGRIDYASRFFDLMPV---RNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPD-HVTFVGVLSACSHAG 676 (934)
Q Consensus 601 ~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g 676 (934)
.+...|...|++++|...|+.... .+...|..+...|.+.|++++|+..|++..+ +.|+ ..++..+...+...|
T Consensus 208 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~ 285 (388)
T d1w3ba_ 208 NLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKG 285 (388)
T ss_dssp HHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHHS
T ss_pred HHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcC
Confidence 888889999999999998887653 4455778888999999999999999999988 4566 567888888999999
Q ss_pred cHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhccCCCcHHHHHH
Q 046194 677 LVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKM-PITPN-SLIWRTVLGACCRANCRKTELGRKA 754 (934)
Q Consensus 677 ~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~~~a~~~ 754 (934)
++++|.+.++..... .+.+...+..+..++.+.|++++|.+.+++. ...|+ ..+|..+...+... |+.++|...
T Consensus 286 ~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--g~~~~A~~~ 361 (388)
T d1w3ba_ 286 SVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQ--GKLQEALMH 361 (388)
T ss_dssp CHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTT--TCCHHHHHH
T ss_pred CHHHHHHHHHhhhcc--CCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--CCHHHHHHH
Confidence 999999999998773 4455788889999999999999999999986 66675 66788888899888 999999999
Q ss_pred HHHHHhcCCCCCchHHHHHHHHHcCCC
Q 046194 755 ANMLFEMEPQNAVNYVLLANMYASGGK 781 (934)
Q Consensus 755 ~~~~~~~~p~~~~~y~~l~~~~~~~g~ 781 (934)
++++++++|+++..|..|+++|.+.|+
T Consensus 362 ~~~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 362 YKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 999999999999999999999998875
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.82 E-value=2.3e-17 Score=179.22 Aligned_cols=371 Identities=12% Similarity=0.070 Sum_probs=277.9
Q ss_pred HHHhCCccHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHH
Q 046194 432 AFADSEALVSEAVKYYLDMRRAGWSPNGVTFINILAAASSFSMGKLGHQVHAQVIKYNVANETTIENALLSCYGKCGEMD 511 (934)
Q Consensus 432 ~~~~~g~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 511 (934)
.+.+.|++ ++|++.|+++.+.. +-+...+..+...+...|+++.|...+..+++.. +.+...+..+...|.+.|+++
T Consensus 8 ~~~~~G~~-~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~~ 84 (388)
T d1w3ba_ 8 REYQAGDF-EAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHTCH-HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHcCCH-HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhcccc
Confidence 34445555 66666666655432 1123344445555566666666666666665543 234567788889999999999
Q ss_pred HHHHHHHhhccC-C-CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhchhhHHHHHHHHHHHHH
Q 046194 512 DCEKIFARMSER-R-DEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVATLERGMEVHACGVR 589 (934)
Q Consensus 512 ~A~~~~~~~~~~-p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~ 589 (934)
+|...+...... | +...+..........+....+............. ...............+....+.........
T Consensus 85 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (388)
T d1w3ba_ 85 EAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccchhhhhHHHHHHhhc
Confidence 999999988764 2 4444555555666677777777776666655333 333344444555566667777777766665
Q ss_pred hCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCC--C-CcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHH
Q 046194 590 ACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPV--R-NVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFV 666 (934)
Q Consensus 590 ~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 666 (934)
.. +.+...+..+...+...|+.++|...++.... | +..+|..+...+...|++++|+..|++....+ ..+...+.
T Consensus 164 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 241 (388)
T d1w3ba_ 164 TQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHG 241 (388)
T ss_dssp HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHH
T ss_pred cC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHH
Confidence 43 33567778888999999999999999987652 3 45588899999999999999999999998854 34466777
Q ss_pred HHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhc
Q 046194 667 GVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGRAGELDKIEEFINKM--PITPNSLIWRTVLGACCRA 743 (934)
Q Consensus 667 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~ 743 (934)
.+...+...|++++|...|++..+ +.|+ ...|..+..+|.+.|++++|.+.++.. ..+.+...+..+...+...
T Consensus 242 ~l~~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 318 (388)
T d1w3ba_ 242 NLACVYYEQGLIDLAIDTYRRAIE---LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQ 318 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH---TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHC
Confidence 788899999999999999999877 4555 778999999999999999999999887 3445677888888888888
Q ss_pred cCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHHhCCCcCCCceeEEEeCCEEEEEEcCCCCCC
Q 046194 744 NCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMKEAEVKKEAGCSWVTMKDGVHVFVAGDESHP 823 (934)
Q Consensus 744 ~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~ 823 (934)
|++++|...++++++++|+++..+..++.+|...|++++|.+.+++..+ .+|
T Consensus 319 --~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--------------------------l~P 370 (388)
T d1w3ba_ 319 --GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--------------------------ISP 370 (388)
T ss_dssp --TCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--------------------------TCT
T ss_pred --CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------------------------hCC
Confidence 9999999999999999999999999999999999999999999988763 345
Q ss_pred ChHHHHHHHHHHHHHH
Q 046194 824 EKDLIYEKLKELNQKM 839 (934)
Q Consensus 824 ~~~~~~~~l~~l~~~m 839 (934)
.....+..+..+..+|
T Consensus 371 ~~~~a~~~lg~~~~~~ 386 (388)
T d1w3ba_ 371 TFADAYSNMGNTLKEM 386 (388)
T ss_dssp TCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHc
Confidence 5666666666666554
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.35 E-value=3.6e-11 Score=126.16 Aligned_cols=264 Identities=9% Similarity=0.026 Sum_probs=170.0
Q ss_pred HHHHHHhcCCHHHHHHHHHhhccC-C-CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhchhh
Q 046194 500 LLSCYGKCGEMDDCEKIFARMSER-R-DEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRL-DHFTFATVLSACASVAT 576 (934)
Q Consensus 500 li~~~~~~g~~~~A~~~~~~~~~~-p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~~~ 576 (934)
....+.+.|++++|...|++..+. | +..+|..+...|...|++++|+..|.+.... .| +...+..+...+...|+
T Consensus 25 ~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~ 102 (323)
T d1fcha_ 25 EGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLEL--KPDNQTALMALAVSFTNESL 102 (323)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcc--cccccccccccccccccccc
Confidence 344566677777777777766553 4 3456666666777777777777777666653 23 33444455555555566
Q ss_pred HHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCCCCcccccHHHHHHHHcCChHHHHHHHHHHHHC
Q 046194 577 LERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPVRNVYSWNSMISGYARHGHGDKALTLFSQMKLD 656 (934)
Q Consensus 577 ~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 656 (934)
+++|.+.+..+........ ........ .....+.......+..+...+...+|...|.+..+.
T Consensus 103 ~~~A~~~~~~~~~~~~~~~-~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~ 165 (323)
T d1fcha_ 103 QRQACEILRDWLRYTPAYA-HLVTPAEE----------------GAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRL 165 (323)
T ss_dssp HHHHHHHHHHHHHTSTTTG-GGCC-------------------------------CTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccchhhHHHhccchH-HHHHhhhh----------------hhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 6666555555544221100 00000000 000011112222334455667788899999988774
Q ss_pred CC-CCChhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHH
Q 046194 657 GP-LPDHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLI 732 (934)
Q Consensus 657 g~-~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~ 732 (934)
.. .++...+..+...+...|++++|+..|+..... .|+ ...|..+..+|.+.|++++|.+.+++. ...| +..+
T Consensus 166 ~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a 242 (323)
T d1fcha_ 166 DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV---RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRS 242 (323)
T ss_dssp STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred hhcccccccchhhHHHHHHHHHHhhhhccccccccc---ccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHH
Confidence 21 223456777778889999999999999998763 355 778889999999999999999999887 5556 4668
Q ss_pred HHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCch-----------HHHHHHHHHcCCChHHHHH
Q 046194 733 WRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVN-----------YVLLANMYASGGKWEDVAK 787 (934)
Q Consensus 733 ~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~-----------y~~l~~~~~~~g~~~~a~~ 787 (934)
|..+..+|... |++++|...++++++++|++... +..+..++...|+++.+..
T Consensus 243 ~~~lg~~~~~~--g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~ 306 (323)
T d1fcha_ 243 RYNLGISCINL--GAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA 306 (323)
T ss_dssp HHHHHHHHHHH--TCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HHHHHHHHHHC--CCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 89999999999 99999999999999999987654 3456777777777766543
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.35 E-value=1.5e-11 Score=129.12 Aligned_cols=241 Identities=12% Similarity=-0.013 Sum_probs=169.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHH
Q 046194 529 WNSMISGYIHNELLPKAMNLVWFMMQRGQRL-DHFTFATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYS 607 (934)
Q Consensus 529 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~ 607 (934)
+-.....+.+.|++++|+..|++.++. .| +..++..+..++...|+++.|...+..+++... -+...+..+...|.
T Consensus 22 ~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~ 98 (323)
T d1fcha_ 22 PFEEGLRRLQEGDLPNAVLLFEAAVQQ--DPKHMEAWQYLGTTQAENEQELLAISALRRCLELKP-DNQTALMALAVSFT 98 (323)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccc-cccccccccccccc
Confidence 334556678889999999999988875 34 355666667777777777777777777766432 24555666666666
Q ss_pred hcCCHHHHHHHhccCCC--CCcc-cccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHHHHH
Q 046194 608 KCGRIDYASRFFDLMPV--RNVY-SWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGFKH 684 (934)
Q Consensus 608 ~~g~~~~A~~~~~~~~~--~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 684 (934)
..|++++|.+.++.... |+.. .+........ ..+.......+..+...+..+++.+.
T Consensus 99 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~a~~~ 158 (323)
T d1fcha_ 99 NESLQRQACEILRDWLRYTPAYAHLVTPAEEGAG--------------------GAGLGPSKRILGSLLSDSLFLEVKEL 158 (323)
T ss_dssp HTTCHHHHHHHHHHHHHTSTTTGGGCC-----------------------------------CTTHHHHHHHHHHHHHHH
T ss_pred ccccccccccchhhHHHhccchHHHHHhhhhhhh--------------------hcccccchhhHHHHHHhhHHHHHHHH
Confidence 77777776666665432 1111 1110000000 00000111122234456778889999
Q ss_pred HHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcC
Q 046194 685 FKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCRANCRKTELGRKAANMLFEME 762 (934)
Q Consensus 685 ~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~ 762 (934)
|....+...-.++...+..+...+.+.|++++|.+.+++. ...| +..+|..+...+... |+.+.|...++++++++
T Consensus 159 ~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~--g~~~~A~~~~~~al~~~ 236 (323)
T d1fcha_ 159 FLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANG--NQSEEAVAAYRRALELQ 236 (323)
T ss_dssp HHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhccccc--ccchhHHHHHHHHHHHh
Confidence 9888764333344677888999999999999999999987 4455 477899999999988 99999999999999999
Q ss_pred CCCCchHHHHHHHHHcCCChHHHHHHHHHHHh
Q 046194 763 PQNAVNYVLLANMYASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 763 p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 794 (934)
|+++..|..++.+|...|++++|.+.+++..+
T Consensus 237 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 237 PGYIRSRYNLGISCINLGAHREAVEHFLEALN 268 (323)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999988765
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=98.82 E-value=2.4e-07 Score=97.36 Aligned_cols=261 Identities=11% Similarity=-0.012 Sum_probs=160.2
Q ss_pred HHHHHhcCCHHHHHHHHHhhccC-CC------cchHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCCHhHHHHHHHHHh
Q 046194 501 LSCYGKCGEMDDCEKIFARMSER-RD------EVSWNSMISGYIHNELLPKAMNLVWFMMQRGQ-RLDHFTFATVLSACA 572 (934)
Q Consensus 501 i~~~~~~g~~~~A~~~~~~~~~~-p~------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~a~~ 572 (934)
...+...|++++|.+.+++.... |+ ...++.+...|...|++++|+..|++...... .++..
T Consensus 19 A~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~---------- 88 (366)
T d1hz4a_ 19 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWH---------- 88 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH----------
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchH----------
Confidence 44556667777777766665432 22 12344555566666666666666666543210 01100
Q ss_pred chhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCC-------CCC----cccccHHHHHHHHcC
Q 046194 573 SVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMP-------VRN----VYSWNSMISGYARHG 641 (934)
Q Consensus 573 ~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-------~~~----~~~~~~li~~~~~~g 641 (934)
.....+..+...|...|++..|...+.... .+. ...+..+...+...|
T Consensus 89 ---------------------~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 147 (366)
T d1hz4a_ 89 ---------------------YALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWA 147 (366)
T ss_dssp ---------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTT
T ss_pred ---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhc
Confidence 012223334455556666666655555432 111 113445566677788
Q ss_pred ChHHHHHHHHHHHHCCCCCC----hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC-----cccHHHHHHHHhhcC
Q 046194 642 HGDKALTLFSQMKLDGPLPD----HVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ-----LEQFSCMVDLLGRAG 712 (934)
Q Consensus 642 ~~~~A~~l~~~m~~~g~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~y~~li~~l~~~g 712 (934)
+++.+...+.+........+ ..++......+...+...++...+........-... ...+..+...+...|
T Consensus 148 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (366)
T d1hz4a_ 148 RLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTG 227 (366)
T ss_dssp CHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred chhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcc
Confidence 88888888887776422211 233444455567788888888887776554322222 234556677788889
Q ss_pred ChHHHHHHHHhC-CCCC-----CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhc------CCCCCchHHHHHHHHHcCC
Q 046194 713 ELDKIEEFINKM-PITP-----NSLIWRTVLGACCRANCRKTELGRKAANMLFEM------EPQNAVNYVLLANMYASGG 780 (934)
Q Consensus 713 ~~~~A~~~~~~m-~~~p-----~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~------~p~~~~~y~~l~~~~~~~g 780 (934)
++++|.+.+++. ...| ....+..+...+... |+.+.|...+++++.. .|.....+..++.+|...|
T Consensus 228 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 305 (366)
T d1hz4a_ 228 DKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILL--GEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAG 305 (366)
T ss_dssp CHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCC
Confidence 999999998876 2222 244566677777777 9999999999887643 3555677899999999999
Q ss_pred ChHHHHHHHHHHHh
Q 046194 781 KWEDVAKARKAMKE 794 (934)
Q Consensus 781 ~~~~a~~~~~~m~~ 794 (934)
++++|.+.+++..+
T Consensus 306 ~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 306 RKSDAQRVLLDALK 319 (366)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999998876643
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.82 E-value=1.3e-07 Score=97.41 Aligned_cols=188 Identities=11% Similarity=0.089 Sum_probs=149.7
Q ss_pred hhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCC--C-C-cccccHHHHHHHHcCChHHHHHHH
Q 046194 575 ATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPV--R-N-VYSWNSMISGYARHGHGDKALTLF 650 (934)
Q Consensus 575 ~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~-~~~~~~li~~~~~~g~~~~A~~l~ 650 (934)
+..+.+..+++.+++...+.+...+..++..+.+.|+++.|..+|+.+.. | + ...|...+....+.|+.++|.++|
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~ 157 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence 45678888999888765555777888889999999999999999998753 2 3 236889999999999999999999
Q ss_pred HHHHHCCCCCChhhHHHHHHH-HHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhC----C
Q 046194 651 SQMKLDGPLPDHVTFVGVLSA-CSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKM----P 725 (934)
Q Consensus 651 ~~m~~~g~~p~~~t~~~ll~a-~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m----~ 725 (934)
+++.+.+ +.+...|...... +...|+.+.|..+|+.+.+. .+.+...|...++.+.+.|++++|..+|++. +
T Consensus 158 ~~al~~~-~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~--~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~ 234 (308)
T d2onda1 158 KKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 234 (308)
T ss_dssp HHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS
T ss_pred HHHHHhC-CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Confidence 9998864 2233344433332 34468999999999999885 3334778999999999999999999999986 3
Q ss_pred CCCC--HHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCc
Q 046194 726 ITPN--SLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAV 767 (934)
Q Consensus 726 ~~p~--~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 767 (934)
..|+ ..+|...+.--..+ |+.+.+..+.+++.++.|.+..
T Consensus 235 ~~~~~~~~iw~~~~~fE~~~--G~~~~~~~~~~r~~~~~~~~~~ 276 (308)
T d2onda1 235 LPPEKSGEIWARFLAFESNI--GDLASILKVEKRRFTAFREEYE 276 (308)
T ss_dssp SCGGGCHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHTTTTTS
T ss_pred CChHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHCccccc
Confidence 4443 56899999988888 9999999999999999887643
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.74 E-value=3.5e-08 Score=101.90 Aligned_cols=186 Identities=7% Similarity=0.044 Sum_probs=87.4
Q ss_pred HHHHHHHhcCCHHHHHHHhccCCC--C-CcccccHHHHHHHHcC-ChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhh
Q 046194 601 ALVDMYSKCGRIDYASRFFDLMPV--R-NVYSWNSMISGYARHG-HGDKALTLFSQMKLDGPLPD-HVTFVGVLSACSHA 675 (934)
Q Consensus 601 ~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~ 675 (934)
.+...+.+.+..++|++.++.+.+ | +..+|+....++...| ++++|+..+++..+. .|+ ..+|..+...+...
T Consensus 48 ~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~--~p~~~~a~~~~~~~~~~l 125 (315)
T d2h6fa1 48 YFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE--QPKNYQVWHHRRVLVEWL 125 (315)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--HHhhhhHHHHHhHHHHhh
Confidence 333444445555555555554432 2 2234444444444443 245555555555542 333 34444444455555
Q ss_pred CcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcc----CCCc
Q 046194 676 GLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCRAN----CRKT 748 (934)
Q Consensus 676 g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~----~~~~ 748 (934)
|++++|+++++.+.+ +.|+ ...|..+..++.+.|++++|++.++++ .+.| +...|+.+...+...+ .++.
T Consensus 126 ~~~~eAl~~~~kal~---~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~~~~ 202 (315)
T d2h6fa1 126 RDPSQELEFIADILN---QDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVL 202 (315)
T ss_dssp TCCTTHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHH
T ss_pred ccHHHHHHHHhhhhh---hhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccchhhhh
Confidence 555555555555544 2233 445555555555555555555555554 3333 3444444443333320 0113
Q ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHH
Q 046194 749 ELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAM 792 (934)
Q Consensus 749 ~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m 792 (934)
+.|...+.++++++|++...|..++.++...| .+++.+.++..
T Consensus 203 ~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~ 245 (315)
T d2h6fa1 203 EREVQYTLEMIKLVPHNESAWNYLKGILQDRG-LSKYPNLLNQL 245 (315)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTC-GGGCHHHHHHH
T ss_pred HHhHHHHHHHHHhCCCchHHHHHHHHHHHhcC-hHHHHHHHHHH
Confidence 44555555555555555555555555544333 34444444433
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.73 E-value=1.7e-08 Score=105.79 Aligned_cols=268 Identities=10% Similarity=-0.047 Sum_probs=186.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhccC-CCc-chHHHHHHH----------HHhcCChhHHHHHHHHHHHcCCCC-CHhHHH
Q 046194 499 ALLSCYGKCGEMDDCEKIFARMSER-RDE-VSWNSMISG----------YIHNELLPKAMNLVWFMMQRGQRL-DHFTFA 565 (934)
Q Consensus 499 ~li~~~~~~g~~~~A~~~~~~~~~~-p~~-~~~~~li~~----------~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~ 565 (934)
.++....+.+..++|.++++..... |+. ..|+..-.. +...|++++|+..|++.... .| +...+.
T Consensus 34 ~~~~~~~~~~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~--~pk~~~~~~ 111 (334)
T d1dcea1 34 AVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWH 111 (334)
T ss_dssp HHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHH
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHh--CCCcHHHHH
Confidence 3333344444457888888877653 543 345443222 23344577888888888764 34 344455
Q ss_pred HHHHHHhch--hhHHHHHHHHHHHHHhCCCCcHhHH-HHHHHHHHhcCCHHHHHHHhccCCCC---CcccccHHHHHHHH
Q 046194 566 TVLSACASV--ATLERGMEVHACGVRACLEFDVVIG-SALVDMYSKCGRIDYASRFFDLMPVR---NVYSWNSMISGYAR 639 (934)
Q Consensus 566 ~ll~a~~~~--~~~~~a~~i~~~~~~~~~~~~~~~~-~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~ 639 (934)
....++... ++.+.+...+..+++.... +...+ ......+...|..++|...++..... +..+|+.+...+.+
T Consensus 112 ~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~ 190 (334)
T d1dcea1 112 HRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQ 190 (334)
T ss_dssp HHHHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHH
T ss_pred HhhHHHHHhccccHHHHHHHHHHHHhhCch-hhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 454444444 4578888888888876433 33333 34556777889999999999988753 45588888899999
Q ss_pred cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHH
Q 046194 640 HGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEE 719 (934)
Q Consensus 640 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~ 719 (934)
.|++++|...+++..+. .|+.. .+...+...+..+++...+..... .-.++...+..++..+...|+.++|.+
T Consensus 191 ~~~~~~A~~~~~~~~~~--~~~~~---~~~~~~~~l~~~~~a~~~~~~~l~--~~~~~~~~~~~l~~~~~~~~~~~~a~~ 263 (334)
T d1dcea1 191 LHPQPDSGPQGRLPENV--LLKEL---ELVQNAFFTDPNDQSAWFYHRWLL--GRAEPLFRCELSVEKSTVLQSELESCK 263 (334)
T ss_dssp HSCCCCSSSCCSSCHHH--HHHHH---HHHHHHHHHCSSCSHHHHHHHHHH--SCCCCSSSCCCCHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHhHHh--HHHHH---HHHHHHHHhcchhHHHHHHHHHHH--hCcchhhHHHHHHHHHHHHhhHHHHHH
Confidence 99998887776665552 33322 233345566777788888777765 234446677778888889999999999
Q ss_pred HHHhC-CCCCC-HHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHc
Q 046194 720 FINKM-PITPN-SLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYAS 778 (934)
Q Consensus 720 ~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~ 778 (934)
.+.+. +..|+ ..+|..+...+... |+.++|...++++++++|.+...|..|+..+.-
T Consensus 264 ~~~~~~~~~p~~~~~~~~l~~~~~~~--~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~~ 322 (334)
T d1dcea1 264 ELQELEPENKWCLLTIILLMRALDPL--LYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLL 322 (334)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHCTG--GGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHhhCchHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHCcccHHHHHHHHHHHhH
Confidence 98876 56664 55777888888877 999999999999999999999999988887764
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=98.72 E-value=3.9e-07 Score=95.62 Aligned_cols=289 Identities=8% Similarity=-0.049 Sum_probs=155.3
Q ss_pred HHHHhccCCchHHHHHHHHHHHhcCCCc----hhHHHHHHHHHHhcCCHHHHHHHHHhhccC----CC----cchHHHHH
Q 046194 466 LAAASSFSMGKLGHQVHAQVIKYNVANE----TTIENALLSCYGKCGEMDDCEKIFARMSER----RD----EVSWNSMI 533 (934)
Q Consensus 466 l~a~~~~~~~~~a~~i~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----p~----~~~~~~li 533 (934)
...+...|+++.|.+++...++.....+ ...++.+...|...|++++|...|++.... ++ ..++..+.
T Consensus 19 A~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 98 (366)
T d1hz4a_ 19 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 98 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 3446788999999999999887643322 245677888999999999999999987652 22 23455566
Q ss_pred HHHHhcCChhHHHHHHHHHHHc----CCCCC--H-hHHHHHHHHHhchhhHHHHHHHHHHHHHhCCC----CcHhHHHHH
Q 046194 534 SGYIHNELLPKAMNLVWFMMQR----GQRLD--H-FTFATVLSACASVATLERGMEVHACGVRACLE----FDVVIGSAL 602 (934)
Q Consensus 534 ~~~~~~g~~~~A~~l~~~m~~~----g~~p~--~-~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~----~~~~~~~~l 602 (934)
..+...|++..|...+.+.... +..+. . ..+..+...+...|+++.+...+......... .....
T Consensus 99 ~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---- 174 (366)
T d1hz4a_ 99 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC---- 174 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHH----
Confidence 7788889999998888776541 11111 1 12222333444445555555554444332111 11222
Q ss_pred HHHHHhcCCHHHHHHHhccCCCCCcccccHHHHHHHHcCChHHHHHHHHHHHHCC--CCCC----hhhHHHHHHHHHhhC
Q 046194 603 VDMYSKCGRIDYASRFFDLMPVRNVYSWNSMISGYARHGHGDKALTLFSQMKLDG--PLPD----HVTFVGVLSACSHAG 676 (934)
Q Consensus 603 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--~~p~----~~t~~~ll~a~~~~g 676 (934)
+..+...+...|+..++...+.+..... .... ...+..+...+...|
T Consensus 175 ---------------------------~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (366)
T d1hz4a_ 175 ---------------------------LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTG 227 (366)
T ss_dssp ---------------------------HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred ---------------------------HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcc
Confidence 2233334444555555555544433210 0111 112333333455566
Q ss_pred cHHHHHHHHHHhHHhhCCCCC--cccHHHHHHHHhhcCChHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhccCC
Q 046194 677 LVDEGFKHFKSMSQVYGLIPQ--LEQFSCMVDLLGRAGELDKIEEFINKM-------PITPN-SLIWRTVLGACCRANCR 746 (934)
Q Consensus 677 ~~~~a~~~~~~m~~~~~~~p~--~~~y~~li~~l~~~g~~~~A~~~~~~m-------~~~p~-~~~~~~ll~~~~~~~~~ 746 (934)
+.++|...++.......-.+. ...+..+...+...|++++|.+.+++. +..|+ ..+|..+...+... |
T Consensus 228 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~--g 305 (366)
T d1hz4a_ 228 DKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQA--G 305 (366)
T ss_dssp CHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--T
T ss_pred cHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHC--C
Confidence 666666665555431110011 223334555666666666666665543 23333 23455555566666 7
Q ss_pred CcHHHHHHHHHHHhcCCCC---------CchHHHHHHHHHcCCChHHHHH
Q 046194 747 KTELGRKAANMLFEMEPQN---------AVNYVLLANMYASGGKWEDVAK 787 (934)
Q Consensus 747 ~~~~a~~~~~~~~~~~p~~---------~~~y~~l~~~~~~~g~~~~a~~ 787 (934)
+.+.|...+++++++.+.. ...+..+...+...++.+++.+
T Consensus 306 ~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~ 355 (366)
T d1hz4a_ 306 RKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQ 355 (366)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHH
T ss_pred CHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHH
Confidence 7777777777666654321 1123334445566677777654
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.67 E-value=4.8e-08 Score=97.86 Aligned_cols=190 Identities=13% Similarity=-0.022 Sum_probs=90.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHhccCC--C-CCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHH
Q 046194 598 IGSALVDMYSKCGRIDYASRFFDLMP--V-RNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPD-HVTFVGVLSACS 673 (934)
Q Consensus 598 ~~~~li~~y~~~g~~~~A~~~~~~~~--~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~ 673 (934)
++..+...|.+.|++++|...|+... . .+..+|+.+..+|.+.|++++|+..|+++.+. .|+ ..++..+..++.
T Consensus 39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~ 116 (259)
T d1xnfa_ 39 LLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAHLNRGIALY 116 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHH--HhhhhhhHHHHHHHHH
Confidence 34444555666666666666666544 1 23445666666666666666666666666653 344 344555555666
Q ss_pred hhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcc--CCCcH
Q 046194 674 HAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGRAGELDKIEEFINKM-PITPNSLIWRTVLGACCRAN--CRKTE 749 (934)
Q Consensus 674 ~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~~--~~~~~ 749 (934)
..|++++|.+.|+...+. .|+ ......+...+.+.+..+.+..+.... ...++...+.. +..+.... .+..+
T Consensus 117 ~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 192 (259)
T d1xnfa_ 117 YGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNI-VEFYLGNISEQTLME 192 (259)
T ss_dssp HTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHH-HHHHTTSSCHHHHHH
T ss_pred HHhhHHHHHHHHHHHHhh---ccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhhhhH-HHHHHHHHHHHHHHH
Confidence 666666666666665542 232 222222333333444333333332222 11111111111 11111000 01122
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHH
Q 046194 750 LGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMK 793 (934)
Q Consensus 750 ~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~ 793 (934)
.+...........|..+..|..|+.+|...|++++|.+.+++..
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 236 (259)
T d1xnfa_ 193 RLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAV 236 (259)
T ss_dssp HHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 22222223333444455556666667777777777766666554
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.65 E-value=2.3e-07 Score=95.60 Aligned_cols=208 Identities=9% Similarity=0.094 Sum_probs=139.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHH
Q 046194 528 SWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYS 607 (934)
Q Consensus 528 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~ 607 (934)
.|+.+-..+.+.+.+++|++++++++.. .|+ +...|+.....+.
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~l--nP~----------------------------------~~~a~~~r~~~l~ 88 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIEL--NAA----------------------------------NYTVWHFRRVLLK 88 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTT----------------------------------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHH--CCC----------------------------------ChHHHHHHHHHHH
Confidence 3455555566667777777777776663 343 3334444555555
Q ss_pred hcC-CHHHHHHHhccCC---CCCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhCcHHHHH
Q 046194 608 KCG-RIDYASRFFDLMP---VRNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPD-HVTFVGVLSACSHAGLVDEGF 682 (934)
Q Consensus 608 ~~g-~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~ 682 (934)
+.| ++++|...++... ..+..+|+.+...+...|++++|++.|+++.+. .|+ ...|..+...+.+.|++++|+
T Consensus 89 ~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~--dp~n~~a~~~~~~~~~~~~~~~~Al 166 (315)
T d2h6fa1 89 SLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNEL 166 (315)
T ss_dssp HTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHH
T ss_pred HhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhh--hhcchHHHHHHHHHHHHHHhhHHHH
Confidence 544 3666666666554 234557777777777888888888888888874 454 667777777888888888888
Q ss_pred HHHHHhHHhhCCCCC-cccHHHHHHHHhhcCC------hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCcHHHHH
Q 046194 683 KHFKSMSQVYGLIPQ-LEQFSCMVDLLGRAGE------LDKIEEFINKM-PITP-NSLIWRTVLGACCRANCRKTELGRK 753 (934)
Q Consensus 683 ~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~------~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~ 753 (934)
+.|+.+.+ +.|+ ...|+.+..++.+.|. +++|++.+.+. ...| +...|..+...+... ..+.+..
T Consensus 167 ~~~~~al~---~~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~---~~~~~~~ 240 (315)
T d2h6fa1 167 QYVDQLLK---EDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDR---GLSKYPN 240 (315)
T ss_dssp HHHHHHHH---HCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTT---CGGGCHH
T ss_pred HHHHHHHH---HCCccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhc---ChHHHHH
Confidence 88888876 3444 5567766666666554 56788877765 4555 577888887766544 4678889
Q ss_pred HHHHHHhcCCCCCch--HHHHHHHHHcC
Q 046194 754 AANMLFEMEPQNAVN--YVLLANMYASG 779 (934)
Q Consensus 754 ~~~~~~~~~p~~~~~--y~~l~~~~~~~ 779 (934)
.++.+.+++|..... +..++.+|...
T Consensus 241 ~~~~~~~l~~~~~~~~~~~~l~~~y~~~ 268 (315)
T d2h6fa1 241 LLNQLLDLQPSHSSPYLIAFLVDIYEDM 268 (315)
T ss_dssp HHHHHHHHTTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcCCHHHHHHHHHHHHHH
Confidence 999999998875544 45667776543
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.55 E-value=2.2e-07 Score=92.87 Aligned_cols=198 Identities=9% Similarity=-0.085 Sum_probs=122.8
Q ss_pred HHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHhccCCC--C-CcccccHHHHHHHH
Q 046194 563 TFATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYASRFFDLMPV--R-NVYSWNSMISGYAR 639 (934)
Q Consensus 563 t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~ 639 (934)
++..+-..+.+.|++++|.+.+..+++.. +.++.+++.+..+|.+.|++++|...|+...+ | +..+|..+...|..
T Consensus 39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 117 (259)
T d1xnfa_ 39 LLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY 117 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHH
Confidence 33344445555666666666666655532 22566777788888888888888888887763 3 44578888888999
Q ss_pred cCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCC----h
Q 046194 640 HGHGDKALTLFSQMKLDGPLPD-HVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGE----L 714 (934)
Q Consensus 640 ~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~----~ 714 (934)
.|++++|+..|++..+. .|+ ......+..++.+.+..+....+...... ..+....+. ++..+..... .
T Consensus 118 ~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~ 191 (259)
T d1xnfa_ 118 GGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK---SDKEQWGWN-IVEFYLGNISEQTLM 191 (259)
T ss_dssp TTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH---SCCCSTHHH-HHHHHTTSSCHHHHH
T ss_pred HhhHHHHHHHHHHHHhh--ccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhc---cchhhhhhh-HHHHHHHHHHHHHHH
Confidence 99999999999998885 454 33333333445555655555555554443 233333333 2233322222 2
Q ss_pred HHHHHHHHhC-CCCCC-HHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchH
Q 046194 715 DKIEEFINKM-PITPN-SLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNY 769 (934)
Q Consensus 715 ~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y 769 (934)
+.+...+... ...|+ ..+|..|...+... |+.+.|...++++++.+|++...|
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~ 246 (259)
T d1xnfa_ 192 ERLKADATDNTSLAEHLSETNFYLGKYYLSL--GDLDSATALFKLAVANNVHNFVEH 246 (259)
T ss_dssp HHHHHHCCSHHHHHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHTTCCTTCHHH
T ss_pred HHHHHHHHHhhhcCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHcCCCCHHHH
Confidence 2222222111 12233 34677777888888 999999999999999999886554
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.52 E-value=5.5e-06 Score=84.75 Aligned_cols=183 Identities=11% Similarity=0.047 Sum_probs=105.6
Q ss_pred CHHHHHHHHHhhccC--C-CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhchhhHHHHHHHHH
Q 046194 509 EMDDCEKIFARMSER--R-DEVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVATLERGMEVHA 585 (934)
Q Consensus 509 ~~~~A~~~~~~~~~~--p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~ 585 (934)
..++|..+|++..+. | +...|...+..+...|+.++|..+|++++..........+...+..+.+.+..+.|.++++
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 346667777765542 2 4445666777777777777777777777654322223456666667777777777777777
Q ss_pred HHHHhCCCCcHhHHHHHHHH-HHhcCCHHHHHHHhccCCC---CCcccccHHHHHHHHcCChHHHHHHHHHHHHCC-CCC
Q 046194 586 CGVRACLEFDVVIGSALVDM-YSKCGRIDYASRFFDLMPV---RNVYSWNSMISGYARHGHGDKALTLFSQMKLDG-PLP 660 (934)
Q Consensus 586 ~~~~~~~~~~~~~~~~li~~-y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p 660 (934)
.+++.+.. +...+...... +...|+.+.|..+|+.+.. .+...|...+..+...|+.++|..+|++..... ..|
T Consensus 159 ~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~ 237 (308)
T d2onda1 159 KAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 237 (308)
T ss_dssp HHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred HHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Confidence 76664332 22222222222 2334566666666666552 234456666666666666666666666665542 233
Q ss_pred C--hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhh
Q 046194 661 D--HVTFVGVLSACSHAGLVDEGFKHFKSMSQVY 692 (934)
Q Consensus 661 ~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 692 (934)
+ ...|...+.--...|+.+.+.++++++.+.+
T Consensus 238 ~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~ 271 (308)
T d2onda1 238 EKSGEIWARFLAFESNIGDLASILKVEKRRFTAF 271 (308)
T ss_dssp GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 2 2235555554455666666666666665544
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.46 E-value=3.4e-08 Score=103.34 Aligned_cols=250 Identities=10% Similarity=-0.059 Sum_probs=176.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHH-H---HHHHH-------HhchhhHHHHHHHHHHHHHhCCCCcHhHHH
Q 046194 532 MISGYIHNELLPKAMNLVWFMMQRGQRLDHFTF-A---TVLSA-------CASVATLERGMEVHACGVRACLEFDVVIGS 600 (934)
Q Consensus 532 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~-~---~ll~a-------~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~ 600 (934)
++......+..++|++++.+.... .|+..+. + .++.. +...+.++++...++.+++... .+...+.
T Consensus 35 ~~~~~~~~~~~~~al~~~~~~l~~--~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~p-k~~~~~~ 111 (334)
T d1dcea1 35 VFQKRQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-KSYGTWH 111 (334)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHH
T ss_pred HHHHHhcccccHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCC-CcHHHHH
Confidence 333333444568999999999874 5765432 2 22222 2345667888888888887542 2556666
Q ss_pred HHHHHHHhcC--CHHHHHHHhccCCC---CCcccccH-HHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHH
Q 046194 601 ALVDMYSKCG--RIDYASRFFDLMPV---RNVYSWNS-MISGYARHGHGDKALTLFSQMKLDGPLPD-HVTFVGVLSACS 673 (934)
Q Consensus 601 ~li~~y~~~g--~~~~A~~~~~~~~~---~~~~~~~~-li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~ 673 (934)
.+...+...+ ++++|...++.+.. ++...|.. +...+...|.+++|+..++++.+. .|+ ...|..+...+.
T Consensus 112 ~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~--~p~~~~a~~~l~~~~~ 189 (334)
T d1dcea1 112 HRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--NFSNYSSWHYRSCLLP 189 (334)
T ss_dssp HHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT--TCCCHHHHHHHHHHHH
T ss_pred HhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHc--CCCCHHHHHHHHHHHH
Confidence 6666666655 58899999888753 34555554 346677789999999999999884 455 566887888888
Q ss_pred hhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhccCCCcHHH
Q 046194 674 HAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKM--PITPNSLIWRTVLGACCRANCRKTELG 751 (934)
Q Consensus 674 ~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~~~~~~~~a 751 (934)
..|++++|...+...... .|+ ...+...+...+..++|...+.+. ...++...+..+...+... ++.+.|
T Consensus 190 ~~~~~~~A~~~~~~~~~~---~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~--~~~~~a 261 (334)
T d1dcea1 190 QLHPQPDSGPQGRLPENV---LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVL--QSELES 261 (334)
T ss_dssp HHSCCCCSSSCCSSCHHH---HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHH--HHHHHH
T ss_pred HhcCHHHHHHHHHHhHHh---HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHH--hhHHHH
Confidence 889888877665554432 122 122334455667777777777665 2233344556666677777 899999
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHHh
Q 046194 752 RKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 752 ~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 794 (934)
...+.++.+.+|.++..|..++++|...|++++|.+.++...+
T Consensus 262 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ 304 (334)
T d1dcea1 262 CKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA 304 (334)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998875
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.33 E-value=4.8e-06 Score=78.14 Aligned_cols=85 Identities=11% Similarity=-0.074 Sum_probs=73.4
Q ss_pred HHHHhcCCHHHHHHHhccCCCCCcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhCcHHHHH
Q 046194 604 DMYSKCGRIDYASRFFDLMPVRNVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPD-HVTFVGVLSACSHAGLVDEGF 682 (934)
Q Consensus 604 ~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~ 682 (934)
..+...|+++.|.+.|+.+..++..+|..+..+|...|++++|++.|++.++. .|+ ...|..+..++.+.|++++|+
T Consensus 13 ~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~l--dp~~~~a~~~~g~~~~~~g~~~~A~ 90 (192)
T d1hh8a_ 13 VLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLYYQTEKYDLAI 90 (192)
T ss_dssp HHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHH--hhhhhhhHHHHHHHHHhhccHHHHH
Confidence 34678899999999999988888888999999999999999999999999884 565 667888888899999999999
Q ss_pred HHHHHhHH
Q 046194 683 KHFKSMSQ 690 (934)
Q Consensus 683 ~~~~~m~~ 690 (934)
..|++...
T Consensus 91 ~~~~kAl~ 98 (192)
T d1hh8a_ 91 KDLKEALI 98 (192)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988875
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.29 E-value=2.4e-06 Score=72.80 Aligned_cols=87 Identities=10% Similarity=0.149 Sum_probs=57.7
Q ss_pred HHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCCh
Q 046194 705 VDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKW 782 (934)
Q Consensus 705 i~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~ 782 (934)
...+.+.|++++|+..|++. ...| ++..|..+..++... |+.+.|...++++++++|+++..|..++.+|...|++
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~--~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~ 87 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKK--GDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRF 87 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhccccccccc--ccccccchhhhhHHHhccchhhHHHHHHHHHHHccCH
Confidence 44555566666666666655 3333 355666666666666 7777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHH
Q 046194 783 EDVAKARKAMK 793 (934)
Q Consensus 783 ~~a~~~~~~m~ 793 (934)
++|...++...
T Consensus 88 ~~A~~~~~~a~ 98 (117)
T d1elwa_ 88 EEAKRTYEEGL 98 (117)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777766665
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.25 E-value=3.8e-06 Score=71.54 Aligned_cols=104 Identities=16% Similarity=0.101 Sum_probs=82.4
Q ss_pred HHHHHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccC
Q 046194 669 LSACSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCRANC 745 (934)
Q Consensus 669 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~ 745 (934)
...+...|++++|+.+|+...+. .|+ ...|..+..+|.+.|++++|++.+++. .+.| ++..|..+..++...
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~-- 84 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKL---DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFL-- 84 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--
T ss_pred HHHHHHcCCHHHHHHHHHHHHhc---CCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHc--
Confidence 44567778888888888888762 344 667888888888888888888888776 3344 567888888888888
Q ss_pred CCcHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 046194 746 RKTELGRKAANMLFEMEPQNAVNYVLLANMYA 777 (934)
Q Consensus 746 ~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~ 777 (934)
|+++.|...++++++++|+++..+..+.++-+
T Consensus 85 ~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~~ 116 (117)
T d1elwa_ 85 NRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 116 (117)
T ss_dssp TCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhC
Confidence 99999999999999999999888888877654
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.20 E-value=2.5e-06 Score=81.06 Aligned_cols=106 Identities=4% Similarity=-0.089 Sum_probs=56.2
Q ss_pred CChhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHH
Q 046194 660 PDHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGRAGELDKIEEFINKM-PITPN-SLIWRTV 736 (934)
Q Consensus 660 p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p~-~~~~~~l 736 (934)
|+...+......+...|++++|+..|+...+. .|+ ...|..+..+|.+.|++++|++.+++. .+.|+ ...|..+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~---~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~l 78 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 78 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHH
Confidence 44555555555566666666666666655542 233 444555555555555555555555554 44443 4445555
Q ss_pred HHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHH
Q 046194 737 LGACCRANCRKTELGRKAANMLFEMEPQNAVNYV 770 (934)
Q Consensus 737 l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~ 770 (934)
..++... |+++.|...++++++++|++...+.
T Consensus 79 g~~~~~l--~~~~~A~~~~~~al~l~p~~~~~~~ 110 (201)
T d2c2la1 79 GQCQLEM--ESYDEAIANLQRAYSLAKEQRLNFG 110 (201)
T ss_dssp HHHHHHT--TCHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHC--CCHHHHHHHHHHHHHhCcccHHHHH
Confidence 5555555 5555555555555555554444333
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.17 E-value=1.2e-05 Score=81.24 Aligned_cols=186 Identities=9% Similarity=-0.025 Sum_probs=110.1
Q ss_pred HHHHHhcCCHHHHHHHhccCCC-----CC----cccccHHHHHHHHcCChHHHHHHHHHHHHCCC---CCC--hhhHHHH
Q 046194 603 VDMYSKCGRIDYASRFFDLMPV-----RN----VYSWNSMISGYARHGHGDKALTLFSQMKLDGP---LPD--HVTFVGV 668 (934)
Q Consensus 603 i~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---~p~--~~t~~~l 668 (934)
...|..+|++++|.+.|.+..+ .+ ..+|+.+..+|.+.|++++|++.+++..+.-. .+. ..++..+
T Consensus 44 a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 123 (290)
T d1qqea_ 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (290)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHH
Confidence 3445556666666655554431 11 13566677777777777777777776554210 111 2335555
Q ss_pred HHHHH-hhCcHHHHHHHHHHhHHhhCCCCC----cccHHHHHHHHhhcCChHHHHHHHHhC-CCC---C----CH-HHHH
Q 046194 669 LSACS-HAGLVDEGFKHFKSMSQVYGLIPQ----LEQFSCMVDLLGRAGELDKIEEFINKM-PIT---P----NS-LIWR 734 (934)
Q Consensus 669 l~a~~-~~g~~~~a~~~~~~m~~~~~~~p~----~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~---p----~~-~~~~ 734 (934)
...|. ..|++++|++.|+...+.+....+ ..+|..+...|.+.|++++|.+.+++. ... + .. ..+.
T Consensus 124 ~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (290)
T d1qqea_ 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL 203 (290)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred HHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHH
Confidence 55564 468999999998887653221222 445777889999999999999999876 111 1 11 1233
Q ss_pred HHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCch--H---HHHHHHHHc--CCChHHHHHHHH
Q 046194 735 TVLGACCRANCRKTELGRKAANMLFEMEPQNAVN--Y---VLLANMYAS--GGKWEDVAKARK 790 (934)
Q Consensus 735 ~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~--y---~~l~~~~~~--~g~~~~a~~~~~ 790 (934)
..+-.+... ++.+.|...+++..+++|..+.. + ..|+.+|.. .+++++|.+.++
T Consensus 204 ~~~~~~l~~--~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~ 264 (290)
T d1qqea_ 204 KKGLCQLAA--TDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFD 264 (290)
T ss_dssp HHHHHHHHT--TCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHT
T ss_pred HHHHHHHHh--ccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 333344455 89999999999999999865443 2 344445544 345777766654
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.10 E-value=3.3e-06 Score=80.22 Aligned_cols=88 Identities=7% Similarity=-0.045 Sum_probs=46.3
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHh
Q 046194 632 SMISGYARHGHGDKALTLFSQMKLDGPLPD-HVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLG 709 (934)
Q Consensus 632 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~ 709 (934)
.....|.+.|++++|+..|++..+. .|+ ...|..+..+|.+.|++++|+..|+...+ +.|+ ...|..+..+|.
T Consensus 9 ~~Gn~~~~~g~~~~Ai~~~~kal~~--~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~---l~p~~~~a~~~lg~~~~ 83 (201)
T d2c2la1 9 EQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALE---LDGQSVKAHFFLGQCQL 83 (201)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHH---hCCCcHHHHHHHHHHHH
Confidence 3444555555555555555555553 233 34455555555555555555555555543 3444 445555555555
Q ss_pred hcCChHHHHHHHHhC
Q 046194 710 RAGELDKIEEFINKM 724 (934)
Q Consensus 710 ~~g~~~~A~~~~~~m 724 (934)
+.|++++|+..+++.
T Consensus 84 ~l~~~~~A~~~~~~a 98 (201)
T d2c2la1 84 EMESYDEAIANLQRA 98 (201)
T ss_dssp HTTCHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHH
Confidence 555555555555543
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.10 E-value=1.3e-05 Score=72.56 Aligned_cols=88 Identities=14% Similarity=0.154 Sum_probs=59.3
Q ss_pred HHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCCh
Q 046194 705 VDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKW 782 (934)
Q Consensus 705 i~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~ 782 (934)
...|.+.|++++|++.|++. ...| +...|..+...+... |+++.|...++++++++|+++..|..++.+|...|++
T Consensus 17 gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~--~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~ 94 (159)
T d1a17a_ 17 ANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRT--ECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 94 (159)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhc--cccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCH
Confidence 44556666666666666665 3344 355666666666666 7777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHh
Q 046194 783 EDVAKARKAMKE 794 (934)
Q Consensus 783 ~~a~~~~~~m~~ 794 (934)
++|.+.++....
T Consensus 95 ~eA~~~~~~a~~ 106 (159)
T d1a17a_ 95 RAALRDYETVVK 106 (159)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777776666653
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.08 E-value=1e-05 Score=75.76 Aligned_cols=115 Identities=10% Similarity=0.036 Sum_probs=65.2
Q ss_pred HhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCcHH
Q 046194 673 SHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCRANCRKTEL 750 (934)
Q Consensus 673 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~~ 750 (934)
...|++++|++.|+.+ .+|+...|..+..+|...|++++|++.|++. .+.| ++..|..+..++... |+.++
T Consensus 16 ~~~~d~~~Al~~~~~i-----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~--g~~~~ 88 (192)
T d1hh8a_ 16 ADKKDWKGALDAFSAV-----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQT--EKYDL 88 (192)
T ss_dssp HHTTCHHHHHHHHHTS-----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--TCHHH
T ss_pred HHCCCHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhh--ccHHH
Confidence 3445555555554432 1233444445555555555555555555544 3333 244555555555555 56666
Q ss_pred HHHHHHHHHhcCCCCC----------------chHHHHHHHHHcCCChHHHHHHHHHHHh
Q 046194 751 GRKAANMLFEMEPQNA----------------VNYVLLANMYASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 751 a~~~~~~~~~~~p~~~----------------~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 794 (934)
|...++++++..|.++ ..+..++.+|.+.|++++|.+.++...+
T Consensus 89 A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~ 148 (192)
T d1hh8a_ 89 AIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 148 (192)
T ss_dssp HHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 6666666555444332 3456788889999999999888776654
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.05 E-value=1.2e-05 Score=72.70 Aligned_cols=115 Identities=7% Similarity=-0.023 Sum_probs=87.0
Q ss_pred HHHHHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccC
Q 046194 669 LSACSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCRANC 745 (934)
Q Consensus 669 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~ 745 (934)
...|.+.|++++|+..|++..+ +.|+ ...|..+..+|.+.|++++|.+.++++ .+.| +..+|..+..++...
T Consensus 17 gn~~~~~~~y~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~-- 91 (159)
T d1a17a_ 17 ANDYFKAKDYENAIKFYSQAIE---LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMAL-- 91 (159)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--
T ss_pred HHHHHHcCCHHHHHHHhhhccc---cchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHc--
Confidence 3456678888888888887776 3344 667777888888888888888888876 4455 456888888888888
Q ss_pred CCcHHHHHHHHHHHhcCCCCCchHHHHHHHHH--cCCChHHHHHH
Q 046194 746 RKTELGRKAANMLFEMEPQNAVNYVLLANMYA--SGGKWEDVAKA 788 (934)
Q Consensus 746 ~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~--~~g~~~~a~~~ 788 (934)
|+.++|...++++++++|+++..+..+..+.. ..+.+++|...
T Consensus 92 g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 92 GKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999988887776643 33446655443
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.05 E-value=5.1e-06 Score=70.07 Aligned_cols=90 Identities=13% Similarity=0.032 Sum_probs=78.7
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHc
Q 046194 701 FSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYAS 778 (934)
Q Consensus 701 y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~ 778 (934)
+-.++..+.+.|++++|...+++. ...| ++.+|..+...+... |+.+.|+..++++++++|+++..+..|+.+|..
T Consensus 19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~--~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~ 96 (112)
T d1hxia_ 19 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAEN--EKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 96 (112)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhh--hhHHHhhcccccccccccccccchHHHHHHHHH
Confidence 344677788889999999888887 4556 477888888888888 999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHH
Q 046194 779 GGKWEDVAKARKAM 792 (934)
Q Consensus 779 ~g~~~~a~~~~~~m 792 (934)
.|++++|.+.+++.
T Consensus 97 ~g~~~~A~~~l~~~ 110 (112)
T d1hxia_ 97 EHNANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 99999999988764
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.03 E-value=0.00012 Score=73.53 Aligned_cols=123 Identities=10% Similarity=-0.016 Sum_probs=60.0
Q ss_pred cCChHHHHHHHHHHHHC----CCCCC-hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCc-----ccHHHHHHHHh
Q 046194 640 HGHGDKALTLFSQMKLD----GPLPD-HVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQL-----EQFSCMVDLLG 709 (934)
Q Consensus 640 ~g~~~~A~~l~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-----~~y~~li~~l~ 709 (934)
.|++++|++.|++..+. +-.+. ..++..+...+...|++++|+.+|+++.....-.+.. ..|..++..+.
T Consensus 131 ~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 210 (290)
T d1qqea_ 131 LHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQL 210 (290)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHH
Confidence 35556666555554331 11111 2335555666667777777777777665531111111 12334444555
Q ss_pred hcCChHHHHHHHHhC-CCCCC------HHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcC
Q 046194 710 RAGELDKIEEFINKM-PITPN------SLIWRTVLGACCRANCRKTELGRKAANMLFEME 762 (934)
Q Consensus 710 ~~g~~~~A~~~~~~m-~~~p~------~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~ 762 (934)
..|+++.|...+++. .+.|+ ......|+.++.....+.++++...++.+.+++
T Consensus 211 ~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~lD 270 (290)
T d1qqea_ 211 AATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLD 270 (290)
T ss_dssp HTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCC
T ss_pred HhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcC
Confidence 667777777777766 33332 223445555554432133455555555544444
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.96 E-value=1.2e-05 Score=68.58 Aligned_cols=105 Identities=17% Similarity=-0.006 Sum_probs=80.3
Q ss_pred HHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhhcCC---hHHHHHHHHhC-CCCCCH---HHHHHHH
Q 046194 666 VGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGRAGE---LDKIEEFINKM-PITPNS---LIWRTVL 737 (934)
Q Consensus 666 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~---~~~A~~~~~~m-~~~p~~---~~~~~ll 737 (934)
..+++.+...+++++|.+.|+...+ +.|+ +.++..+..+|.+.++ +++|+++++++ ...|+. .+|..|.
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~---~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg 79 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKA---AGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLA 79 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---HSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHh---hCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHH
Confidence 3567777888888899988888877 3344 6788888888877554 45688888886 444543 3677888
Q ss_pred HHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 046194 738 GACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANM 775 (934)
Q Consensus 738 ~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~ 775 (934)
.+|... |+++.|+..++++++++|++......+..+
T Consensus 80 ~~y~~~--g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I 115 (122)
T d1nzna_ 80 VGNYRL--KEYEKALKYVRGLLQTEPQNNQAKELERLI 115 (122)
T ss_dssp HHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHH--hhhHHHHHHHHHHHHhCcCCHHHHHHHHHH
Confidence 888888 999999999999999999987666555444
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.93 E-value=2.4e-05 Score=71.55 Aligned_cols=84 Identities=14% Similarity=-0.013 Sum_probs=72.6
Q ss_pred cHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 046194 700 QFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYA 777 (934)
Q Consensus 700 ~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~ 777 (934)
.|+.+..+|.+.|++++|+..+++. .+.| ++..|..+..++... |+++.|...++++++++|+|+.....+..++.
T Consensus 64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~--g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~ 141 (170)
T d1p5qa1 64 SHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAV--NDFELARADFQKVLQLYPNNKAAKTQLAVCQQ 141 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHh--hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 4667888999999999999999887 5566 677888888889888 99999999999999999999999999999987
Q ss_pred cCCChHHH
Q 046194 778 SGGKWEDV 785 (934)
Q Consensus 778 ~~g~~~~a 785 (934)
..+...+.
T Consensus 142 ~~~~~~~~ 149 (170)
T d1p5qa1 142 RIRRQLAR 149 (170)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77666654
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.93 E-value=5.2e-05 Score=69.20 Aligned_cols=110 Identities=5% Similarity=-0.015 Sum_probs=80.6
Q ss_pred hHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 046194 664 TFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKMPITPNSLIWRTVLGACCRA 743 (934)
Q Consensus 664 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~ 743 (934)
.+......+...|++++|+..|+.........+....- .......+ ...+|..+..+|...
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~------------~~~~~~~~-------~~~~~~nla~~y~k~ 75 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNE------------EAQKAQAL-------RLASHLNLAMCHLKL 75 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSH------------HHHHHHHH-------HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchH------------HHhhhchh-------HHHHHHHHHHHHHhh
Confidence 34455567788888888888888887643222221110 00000000 123566677777788
Q ss_pred cCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHHh
Q 046194 744 NCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 744 ~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 794 (934)
|+++.|+..++++++++|+++..|..++.+|...|++++|...++...+
T Consensus 76 --~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 124 (170)
T d1p5qa1 76 --QAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQ 124 (170)
T ss_dssp --TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --hhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998875
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.85 E-value=7.9e-05 Score=66.55 Aligned_cols=132 Identities=8% Similarity=0.016 Sum_probs=91.7
Q ss_pred hHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 046194 664 TFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKMPITPNSLIWRTVLGACCRA 743 (934)
Q Consensus 664 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~ 743 (934)
.+..-...+.+.|++++|+..|..........+.... ......... ....++..+..++...
T Consensus 19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~--------------~~~~~~~~~----~~~~~~~Nla~~~~~l 80 (153)
T d2fbna1 19 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDD--------------QILLDKKKN----IEISCNLNLATCYNKN 80 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCC--------------HHHHHHHHH----HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhh--------------HHHHHhhhh----HHHHHHhhHHHHHHHh
Confidence 3444555677778888888887777653211111000 000000000 0124667777788888
Q ss_pred cCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHHhCCCcCCCceeEEEeCCEEEEEEcCCCCCC
Q 046194 744 NCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMKEAEVKKEAGCSWVTMKDGVHVFVAGDESHP 823 (934)
Q Consensus 744 ~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~ 823 (934)
|+++.|...++++++++|.++..|..++.+|...|++++|...++...+ .+|
T Consensus 81 --~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~--------------------------l~P 132 (153)
T d2fbna1 81 --KDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAAS--------------------------LNP 132 (153)
T ss_dssp --TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--------------------------HST
T ss_pred --cccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHH--------------------------hCC
Confidence 9999999999999999999999999999999999999999999888764 346
Q ss_pred ChHHHHHHHHHHHHHHHH
Q 046194 824 EKDLIYEKLKELNQKMRD 841 (934)
Q Consensus 824 ~~~~~~~~l~~l~~~m~~ 841 (934)
.+..+...+..+..+|++
T Consensus 133 ~n~~~~~~l~~~~~kl~~ 150 (153)
T d2fbna1 133 NNLDIRNSYELCVNKLKE 150 (153)
T ss_dssp TCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 677777777777777764
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.73 E-value=6.6e-05 Score=63.77 Aligned_cols=94 Identities=12% Similarity=0.010 Sum_probs=77.1
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcc-CCCcHHHHHHHHHHHhcCCCC--CchHHHHHHH
Q 046194 701 FSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCRAN-CRKTELGRKAANMLFEMEPQN--AVNYVLLANM 775 (934)
Q Consensus 701 y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~-~~~~~~a~~~~~~~~~~~p~~--~~~y~~l~~~ 775 (934)
...+++.+...+++++|.+.|++. ...| ++.++..+..++...+ .++.+.|...++++++.+|.+ ...+..|+.+
T Consensus 2 ~~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 2 MEAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 456788889999999999999988 4555 5678888888887641 145667999999999998765 3478999999
Q ss_pred HHcCCChHHHHHHHHHHHh
Q 046194 776 YASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 776 ~~~~g~~~~a~~~~~~m~~ 794 (934)
|.+.|++++|.+.++.+.+
T Consensus 82 y~~~g~~~~A~~~~~~aL~ 100 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQ 100 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHH
Confidence 9999999999999998875
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.68 E-value=0.015 Score=58.23 Aligned_cols=277 Identities=10% Similarity=0.079 Sum_probs=157.1
Q ss_pred CCcccHHHHHHHHhccCCchHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccCCCcchHHHHHHHH
Q 046194 457 PNGVTFINILAAASSFSMGKLGHQVHAQVIKYNVANETTIENALLSCYGKCGEMDDCEKIFARMSERRDEVSWNSMISGY 536 (934)
Q Consensus 457 p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~ 536 (934)
||..-...+..-|.+.|.++.|..++..+.. +..++..|.+.++++.|.+++.... +..+|..+...+
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~k~~---~~~~~k~~~~~l 79 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARKAN---STRTWKEVCFAC 79 (336)
T ss_dssp C----------------CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHHHHT---CHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC---------HHHHHHHHHhhccHHHHHHHHHHcC---CHHHHHHHHHHH
Confidence 4545555566666777777777777764432 2467777888888888888776553 667888888888
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHH
Q 046194 537 IHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVATLERGMEVHACGVRACLEFDVVIGSALVDMYSKCGRIDYAS 616 (934)
Q Consensus 537 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~ 616 (934)
.+.....-| .+.......+......++..|...|..+....+++..... -..+..+++-++..|++.+. +.-.
T Consensus 80 ~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~~-~kl~ 152 (336)
T d1b89a_ 80 VDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFKP-QKMR 152 (336)
T ss_dssp HHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTCH-HHHH
T ss_pred HhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhCh-HHHH
Confidence 877665433 2223334455566677888888888888888888876532 24467778888888888754 3333
Q ss_pred HHhccCCC-C----------CcccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHHHHHH
Q 046194 617 RFFDLMPV-R----------NVYSWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGFKHF 685 (934)
Q Consensus 617 ~~~~~~~~-~----------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 685 (934)
+.+..... - ....|.-++-.|.+.|++++|+.+. .+ -.|+.......+..+.+.++.+...+..
T Consensus 153 e~l~~~s~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~---i~--~~~~~~~~~~f~e~~~k~~N~e~~~~~i 227 (336)
T d1b89a_ 153 EHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM---MN--HPTDAWKEGQFKDIITKVANVELYYRAI 227 (336)
T ss_dssp HHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHH---HH--STTTTCCHHHHHHHHHHCSSTHHHHHHH
T ss_pred HHHHhccccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHH---HH--cchhhhhHHHHHHHHHccCChHHHHHHH
Confidence 33333211 0 1123455555555666666555432 22 1344444445555666666666655555
Q ss_pred HHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCC
Q 046194 686 KSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKMPITPNSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQN 765 (934)
Q Consensus 686 ~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~ 765 (934)
....+. ++...+.++......-+..+..+.+++- +++.......+...+.+ +
T Consensus 228 ~~yL~~-----~p~~i~~lL~~v~~~~d~~r~V~~~~k~---------------------~~l~li~p~Le~v~~~n--~ 279 (336)
T d1b89a_ 228 QFYLEF-----KPLLLNDLLMVLSPRLDHTRAVNYFSKV---------------------KQLPLVKPYLRSVQNHN--N 279 (336)
T ss_dssp HHHHHH-----CGGGHHHHHHHHGGGCCHHHHHHHHHHT---------------------TCTTTTHHHHHHHHTTC--C
T ss_pred HHHHHc-----CHHHHHHHHHHhccCCCHHHHHHHHHhc---------------------CCcHHHHHHHHHHHHcC--h
Confidence 544431 2344556666666666666666666554 44444555555543322 3
Q ss_pred CchHHHHHHHHHcCCChHHH
Q 046194 766 AVNYVLLANMYASGGKWEDV 785 (934)
Q Consensus 766 ~~~y~~l~~~~~~~g~~~~a 785 (934)
...+..|..+|...++++.-
T Consensus 280 ~~vn~al~~lyie~~d~~~l 299 (336)
T d1b89a_ 280 KSVNESLNNLFITEEDYQAL 299 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhCcchhHHH
Confidence 46788888888888886543
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.67 E-value=0.00021 Score=64.92 Aligned_cols=93 Identities=14% Similarity=0.047 Sum_probs=75.6
Q ss_pred cHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 046194 700 QFSCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYA 777 (934)
Q Consensus 700 ~y~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~ 777 (934)
.|..+..+|.+.|++++|++.+++. .+.| +...|..+..++... |+++.|...++++++++|+++.+...+..+..
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l--~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~ 143 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLM--NEFESAKGDFEKVLEVNPQNKAARLQIFMCQK 143 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 4666788899999999999999887 4444 577888888899999 99999999999999999999999999999887
Q ss_pred cCCChHH-HHHHHHHHHh
Q 046194 778 SGGKWED-VAKARKAMKE 794 (934)
Q Consensus 778 ~~g~~~~-a~~~~~~m~~ 794 (934)
..+...+ ..+++..|.+
T Consensus 144 ~~~~~~e~~kk~~~~~f~ 161 (168)
T d1kt1a1 144 KAKEHNERDRRTYANMFK 161 (168)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHh
Confidence 7775544 4455555543
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.64 E-value=0.00013 Score=62.79 Aligned_cols=90 Identities=13% Similarity=0.127 Sum_probs=72.1
Q ss_pred HHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCc-------hHHHH
Q 046194 702 SCMVDLLGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAV-------NYVLL 772 (934)
Q Consensus 702 ~~li~~l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~-------~y~~l 772 (934)
-.+++.+.+.|++++|++.|++. .+.| +...|..+..++... |+++.|...++++++++|+++. +|..+
T Consensus 8 k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~--~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~l 85 (128)
T d1elra_ 8 KELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEK--GDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (128)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHc--CchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 34667777888888888888776 4444 467788888888888 9999999999999999988776 45567
Q ss_pred HHHHHcCCChHHHHHHHHHHH
Q 046194 773 ANMYASGGKWEDVAKARKAMK 793 (934)
Q Consensus 773 ~~~~~~~g~~~~a~~~~~~m~ 793 (934)
+.++...+++++|.+.++...
T Consensus 86 g~~~~~~~~~~~A~~~~~kal 106 (128)
T d1elra_ 86 GNSYFKEEKYKDAIHFYNKSL 106 (128)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHH
Confidence 778899999999999987665
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.61 E-value=0.0003 Score=63.84 Aligned_cols=111 Identities=5% Similarity=-0.014 Sum_probs=76.8
Q ss_pred hhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 046194 663 VTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKMPITPNSLIWRTVLGACCR 742 (934)
Q Consensus 663 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~ 742 (934)
..+......+...|++++|+..|+.........+.... +.. ...+.+ ...++..+..++..
T Consensus 16 ~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~--------------~~~-~~~~~~----~~~~~~Nla~~~~~ 76 (168)
T d1kt1a1 16 AIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSE--------------KES-KASESF----LLAAFLNLAMCYLK 76 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCH--------------HHH-HHHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccch--------------hhh-hhcchh----HHHHHHhHHHHHHH
Confidence 34555555667777777777777666553221111100 000 000000 12345566667777
Q ss_pred ccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHHh
Q 046194 743 ANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 743 ~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 794 (934)
. |+++.|...++++++++|.++..|..++.+|...|++++|.+.++.+.+
T Consensus 77 l--~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~ 126 (168)
T d1kt1a1 77 L--REYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE 126 (168)
T ss_dssp T--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred h--hhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7 9999999999999999999999999999999999999999999998874
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.59 E-value=0.00017 Score=65.62 Aligned_cols=109 Identities=9% Similarity=0.022 Sum_probs=74.9
Q ss_pred HHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhCCCCC-CHHHHHHHHHHHHhc
Q 046194 665 FVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKMPITP-NSLIWRTVLGACCRA 743 (934)
Q Consensus 665 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~~~p-~~~~~~~ll~~~~~~ 743 (934)
+......+...|++++|++.|+++.+.. ..........+. ..+.| +...|..+...+...
T Consensus 30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~~-------------~~~~~~~~~~~~------~~~~~~~~~~~~nla~~~~~~ 90 (169)
T d1ihga1 30 LKNIGNTFFKSQNWEMAIKKYTKVLRYV-------------EGSRAAAEDADG------AKLQPVALSCVLNIGACKLKM 90 (169)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH-------------HHHHHHSCHHHH------GGGHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhh-------------hhhhhhhhhHHH------HHhChhhHHHHHHHHHHHHhh
Confidence 4455556777888888888887765410 000000011110 01223 344666777777777
Q ss_pred cCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHHh
Q 046194 744 NCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 744 ~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 794 (934)
|+++.|...++++++++|+++..|..++.+|...|++++|.+.++...+
T Consensus 91 --~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~ 139 (169)
T d1ihga1 91 --SDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE 139 (169)
T ss_dssp --TCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --cccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999888887775
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.57 E-value=0.00015 Score=66.11 Aligned_cols=132 Identities=10% Similarity=0.038 Sum_probs=96.7
Q ss_pred cccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHH
Q 046194 629 SWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDL 707 (934)
Q Consensus 629 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~ 707 (934)
.+......+...|++++|+..|+++.+. +..........+.. .+.|. ...|..+..+
T Consensus 29 ~~~~~~~~~~~~~~y~~Ai~~y~~al~~------------~~~~~~~~~~~~~~----------~~~~~~~~~~~nla~~ 86 (169)
T d1ihga1 29 DLKNIGNTFFKSQNWEMAIKKYTKVLRY------------VEGSRAAAEDADGA----------KLQPVALSCVLNIGAC 86 (169)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH------------HHHHHHHSCHHHHG----------GGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh------------hhhhhhhhhhHHHH----------HhChhhHHHHHHHHHH
Confidence 3445666788899999999999987651 11111111111111 12232 5567788899
Q ss_pred HhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHH
Q 046194 708 LGRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWED 784 (934)
Q Consensus 708 l~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~ 784 (934)
|.+.|++++|+..+++. .+.| ++..|..+..++... |+++.|...++++++++|+++..+..|..++.......+
T Consensus 87 ~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l--~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~~ 163 (169)
T d1ihga1 87 KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGL--KEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKD 163 (169)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHc--cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999987 6666 467899999999999 999999999999999999999998888887665444433
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.55 E-value=1.5e-05 Score=87.42 Aligned_cols=145 Identities=10% Similarity=-0.006 Sum_probs=74.8
Q ss_pred hHHHHHHHHHHHHCCCCCChhhHHHHHHHH--HhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhhcCChHHHHH
Q 046194 643 GDKALTLFSQMKLDGPLPDHVTFVGVLSAC--SHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGRAGELDKIEE 719 (934)
Q Consensus 643 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~--~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~ 719 (934)
+..+++.+++..+....|+..-....+..+ ...+.++.++..+... +++.|+ ...+..+...+.+.|+.++|..
T Consensus 65 y~~~ie~~r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~---~~l~~~~~~~~~~lg~~~~~~~~~~~A~~ 141 (497)
T d1ya0a1 65 FKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTV---FNVDLPCRVKSSQLGIISNKQTHTSAIVK 141 (497)
T ss_dssp THHHHHHHHHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC---------------------------------
T ss_pred HHHHHHHHHHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HCCChhhHHHHHHhHHHHHhCCCHHHHHH
Confidence 345666677666544444433332222221 2233444444433332 345554 6667778888888888888877
Q ss_pred HHHhCCCCCC-HHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHH
Q 046194 720 FINKMPITPN-SLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMK 793 (934)
Q Consensus 720 ~~~~m~~~p~-~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~ 793 (934)
.+++. +.++ ...+..|...++.. |+++.|...++++++++|+++..|..||.+|...|+..+|...+.+..
T Consensus 142 ~~~~a-l~~~~~~~~~~LG~l~~~~--~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral 213 (497)
T d1ya0a1 142 PQSSS-CSYICQHCLVHLGDIARYR--NQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSI 213 (497)
T ss_dssp -CCHH-HHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHH-hCCCHHHHHHHHHHHHHHc--ccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 66543 1122 24667777888888 899999999999999999999999999999999999999888877665
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.54 E-value=0.016 Score=57.90 Aligned_cols=212 Identities=13% Similarity=0.097 Sum_probs=134.2
Q ss_pred HHHHHHhhccCChhHHHHHHhcCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCchH
Q 046194 295 NGLVNMYAKCGTIDDSRSVFRFMIGKDSVSWNTMISGLDQNGCYEEAIMNFCAMRRDGLMSSNFSLISTLSSCASLGWIM 374 (934)
Q Consensus 295 ~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~ 374 (934)
..+.+.|.+.|.++.|..++..+. -|.-++..+.+.+++..|.+++.+.. +..+|..+..+|.......
T Consensus 18 ~~i~~~c~~~~lye~A~~lY~~~~-----d~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~~~~l~~~~e~~ 86 (336)
T d1b89a_ 18 QQVGDRCYDEKMYDAAKLLYNNVS-----NFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACVDGKEFR 86 (336)
T ss_dssp -----------CTTTHHHHHHHTT-----CHHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCC-----CHHHHHHHHHhhccHHHHHHHHHHcC------CHHHHHHHHHHHHhCcHHH
Confidence 344567778899999999998554 58888999999999999999887552 5568888888888776665
Q ss_pred HHHHHHHHHhhhCCCCchhHHHHHHHHHHhcCChHHHHHHHhhCC---CCCccchHHHHHHHHhCCccHHHHHHHHHHHH
Q 046194 375 LGQQIHGEGLKLGLDSDVSVSNALLSLYADAGYLSRCLKVFFLMP---EHDQVSWNSVIGAFADSEALVSEAVKYYLDMR 451 (934)
Q Consensus 375 ~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~~A~~l~~~m~ 451 (934)
.+. +.......+..-...++..|-..|.+++...+++... ..+...++.++..|++.+. ++.++.++..
T Consensus 87 la~-----i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~~--~kl~e~l~~~- 158 (336)
T d1b89a_ 87 LAQ-----MCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKP--QKMREHLELF- 158 (336)
T ss_dssp HHH-----HTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCH--HHHHHHHHHH-
T ss_pred HHH-----HHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhCh--HHHHHHHHhc-
Confidence 432 2223334455566789999999999999999998643 3466678899999998654 4555554433
Q ss_pred HcCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccCCCcchHHH
Q 046194 452 RAGWSPNGVTFINILAAASSFSMGKLGHQVHAQVIKYNVANETTIENALLSCYGKCGEMDDCEKIFARMSERRDEVSWNS 531 (934)
Q Consensus 452 ~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ 531 (934)
+ +......+++.|...+-+ ..++-.|.+.|.+++|..+.-.-. +++.....
T Consensus 159 --s---~~y~~~k~~~~c~~~~l~----------------------~elv~Ly~~~~~~~~A~~~~i~~~--~~~~~~~~ 209 (336)
T d1b89a_ 159 --W---SRVNIPKVLRAAEQAHLW----------------------AELVFLYDKYEEYDNAIITMMNHP--TDAWKEGQ 209 (336)
T ss_dssp --S---TTSCHHHHHHHHHTTTCH----------------------HHHHHHHHHTTCHHHHHHHHHHST--TTTCCHHH
T ss_pred --c---ccCCHHHHHHHHHHcCCh----------------------HHHHHHHHhcCCHHHHHHHHHHcc--hhhhhHHH
Confidence 1 233344455566554443 345666778888887766543322 24444455
Q ss_pred HHHHHHhcCChhHHHHHHHHHHH
Q 046194 532 MISGYIHNELLPKAMNLVWFMMQ 554 (934)
Q Consensus 532 li~~~~~~g~~~~A~~l~~~m~~ 554 (934)
.+..+.+..+++...++.....+
T Consensus 210 f~e~~~k~~N~e~~~~~i~~yL~ 232 (336)
T d1b89a_ 210 FKDIITKVANVELYYRAIQFYLE 232 (336)
T ss_dssp HHHHHHHCSSTHHHHHHHHHHHH
T ss_pred HHHHHHccCChHHHHHHHHHHHH
Confidence 56666666666655555554443
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.53 E-value=0.00012 Score=61.30 Aligned_cols=87 Identities=6% Similarity=-0.033 Sum_probs=60.2
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHh
Q 046194 632 SMISGYARHGHGDKALTLFSQMKLDGPLPD-HVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLG 709 (934)
Q Consensus 632 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~ 709 (934)
.+...+.+.|++++|+..|++..+. .|+ ...|..+..++.+.|++++|+..|+...+ +.|+ ...|..+...|.
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~---~~p~~~~a~~~la~~y~ 95 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARM---LDPKDIAVHAALAVSHT 95 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhccc--ccccchhhhhhhhhhhhhhhHHHhhcccccccc---cccccccchHHHHHHHH
Confidence 3455666777777777777777773 454 55566666677777777777777777765 3444 666777777777
Q ss_pred hcCChHHHHHHHHh
Q 046194 710 RAGELDKIEEFINK 723 (934)
Q Consensus 710 ~~g~~~~A~~~~~~ 723 (934)
..|++++|.+.+++
T Consensus 96 ~~g~~~~A~~~l~~ 109 (112)
T d1hxia_ 96 NEHNANAALASLRA 109 (112)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHH
Confidence 77777777777665
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.47 E-value=0.00056 Score=60.76 Aligned_cols=125 Identities=8% Similarity=-0.062 Sum_probs=91.7
Q ss_pred cccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHH
Q 046194 629 SWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLL 708 (934)
Q Consensus 629 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l 708 (934)
.+......+.+.|++.+|+..|++..+. -|...... -......... ....+|+.+..+|
T Consensus 19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~--~~~~~~~~-----------~~~~~~~~~~--------~~~~~~~Nla~~~ 77 (153)
T d2fbna1 19 DIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEWD-----------DQILLDKKKN--------IEISCNLNLATCY 77 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTCC-----------CHHHHHHHHH--------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh--Ccchhhhh-----------hHHHHHhhhh--------HHHHHHhhHHHHH
Confidence 5666777889999999999999998873 22211100 0000000000 1123567788899
Q ss_pred hhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 046194 709 GRAGELDKIEEFINKM-PITP-NSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMY 776 (934)
Q Consensus 709 ~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~ 776 (934)
.+.|++++|++.+++. .+.| +..+|..+..++... |+++.|...++++++++|+|+.....+..+.
T Consensus 78 ~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~l--g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~ 145 (153)
T d2fbna1 78 NKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYF--GFLEEAKENLYKAASLNPNNLDIRNSYELCV 145 (153)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHhcccchhhhhhhccccccchhhhhhHHhHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 9999999999999887 5556 578999999999999 9999999999999999999988877766554
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.33 E-value=0.0056 Score=59.83 Aligned_cols=226 Identities=9% Similarity=-0.065 Sum_probs=125.2
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhc----hhhHHHHHHHHHHHHHhCCCCcHhHHHH
Q 046194 526 EVSWNSMISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACAS----VATLERGMEVHACGVRACLEFDVVIGSA 601 (934)
Q Consensus 526 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~~~~~~a~~i~~~~~~~~~~~~~~~~~~ 601 (934)
+..+..+-..+.+.+++++|++.|++..+.| +...+..+-..+.. ..+...+...+....+.+
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---------- 68 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---------- 68 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc----------
Confidence 3455666666677788888888888877665 22222222222221 223444444444433332
Q ss_pred HHHHHHhcCCHHHHHHHhccCCCCCcccccHHHHHHHH----cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHH----
Q 046194 602 LVDMYSKCGRIDYASRFFDLMPVRNVYSWNSMISGYAR----HGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACS---- 673 (934)
Q Consensus 602 li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~---- 673 (934)
+...+..+...+.. .++.+.|...+++..+.|..+ ....+...+.
T Consensus 69 ------------------------~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~---a~~~l~~~~~~~~~ 121 (265)
T d1ouva_ 69 ------------------------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAE---GCASLGGIYHDGKV 121 (265)
T ss_dssp ------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHH---HHHHHHHHHHHCSS
T ss_pred ------------------------ccchhhccccccccccccchhhHHHHHHHhhhhhhhhhh---HHHhhcccccCCCc
Confidence 11222222222221 345566777777766655211 1111211211
Q ss_pred hhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcc--CCC
Q 046194 674 HAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGR----AGELDKIEEFINKMPITPNSLIWRTVLGACCRAN--CRK 747 (934)
Q Consensus 674 ~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~----~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~--~~~ 747 (934)
.......+...+...... .+...+..|...|.. ..+...+..+++...-..+...+..|...+.... ..|
T Consensus 122 ~~~~~~~a~~~~~~~~~~----~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d 197 (265)
T d1ouva_ 122 VTRDFKKAVEYFTKACDL----NDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKN 197 (265)
T ss_dssp SCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCC
T ss_pred ccchhHHHHHHhhhhhcc----cccchhhhhhhhhccCCCcccccccchhhhhccccccccccccchhhhcccCcccccc
Confidence 233455666665555442 345556666666654 3456666666666532335555555555544310 168
Q ss_pred cHHHHHHHHHHHhcCCCCCchHHHHHHHHHc----CCChHHHHHHHHHHHhCCC
Q 046194 748 TELGRKAANMLFEMEPQNAVNYVLLANMYAS----GGKWEDVAKARKAMKEAEV 797 (934)
Q Consensus 748 ~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~----~g~~~~a~~~~~~m~~~~~ 797 (934)
.+.|...++++.+.. ++..+..|+.+|.. ..+.++|.+.+++.-+.|.
T Consensus 198 ~~~A~~~~~~aa~~g--~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 198 FKEALARYSKACELE--NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp HHHHHHHHHHHHHTT--CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred hhhhhhhHhhhhccc--CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence 888999999988874 56788889999886 4478889999988876653
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.21 E-value=0.00092 Score=57.16 Aligned_cols=91 Identities=11% Similarity=0.020 Sum_probs=62.4
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC-----cccHHHHH
Q 046194 632 SMISGYARHGHGDKALTLFSQMKLDGPLPD-HVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ-----LEQFSCMV 705 (934)
Q Consensus 632 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~y~~li 705 (934)
.+...|.+.|++++|+..|++.++. .|+ ...+..+..+|.+.|++++|++.++.+.+...-.+. ..+|..+.
T Consensus 9 ~~G~~~~~~~~y~~Ai~~y~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 9 ELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 4556677788888888888888874 444 566777777888888888888888887653111111 13455666
Q ss_pred HHHhhcCChHHHHHHHHhC
Q 046194 706 DLLGRAGELDKIEEFINKM 724 (934)
Q Consensus 706 ~~l~~~g~~~~A~~~~~~m 724 (934)
+.+...+++++|.+.+++.
T Consensus 87 ~~~~~~~~~~~A~~~~~ka 105 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKS 105 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHH
Confidence 6777777777777777654
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.16 E-value=0.00077 Score=61.44 Aligned_cols=112 Identities=12% Similarity=0.030 Sum_probs=79.9
Q ss_pred HHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhccCCCc
Q 046194 669 LSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDKIEEFINKMPITPNSLIWRTVLGACCRANCRKT 748 (934)
Q Consensus 669 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~ 748 (934)
.......|++++|.+.|.....-+.-.+-.. +...........-++.. ....|..+...+... |+.
T Consensus 18 g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~--------~~~~~w~~~~r~~l~~~----~~~a~~~la~~~~~~--g~~ 83 (179)
T d2ff4a2 18 GVHAAAAGRFEQASRHLSAALREWRGPVLDD--------LRDFQFVEPFATALVED----KVLAHTAKAEAEIAC--GRA 83 (179)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCSSTTGG--------GTTSTTHHHHHHHHHHH----HHHHHHHHHHHHHHT--TCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCccccccc--------CcchHHHHHHHHHHHHH----HHHHHHHHHHHHHHC--CCc
Confidence 3457788999999999998876322111000 00000111111111111 234678888889999 999
Q ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHHh
Q 046194 749 ELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 749 ~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 794 (934)
+.|...++++++++|.+...|..++.+|...|++++|.+.++.+.+
T Consensus 84 ~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~ 129 (179)
T d2ff4a2 84 SAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 129 (179)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999988743
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.14 E-value=0.00015 Score=63.97 Aligned_cols=126 Identities=10% Similarity=0.055 Sum_probs=76.5
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhh----------CcHHHHHHHHHHhHHhhCCCCC-cccHHHH
Q 046194 637 YARHGHGDKALTLFSQMKLDGPLPD-HVTFVGVLSACSHA----------GLVDEGFKHFKSMSQVYGLIPQ-LEQFSCM 704 (934)
Q Consensus 637 ~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~----------g~~~~a~~~~~~m~~~~~~~p~-~~~y~~l 704 (934)
|-+.+.+++|+..|++..+. .|+ ...+..+..+|... +.+++|+..|++..+ +.|+ ...|..+
T Consensus 7 ~~r~~~fe~A~~~~e~al~~--~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~---l~P~~~~a~~~l 81 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL---IDPKKDEAVWCI 81 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhh--CCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH---hcchhhHHHhhH
Confidence 45566788888888888774 565 44555555555533 334556666666554 3444 4455555
Q ss_pred HHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHH
Q 046194 705 VDLLGRAGELDKIEEFINKMPITPNSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWED 784 (934)
Q Consensus 705 i~~l~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~ 784 (934)
..+|...|++. ++... .. ++++.|...++++++++|++...+..|+.. ..
T Consensus 82 G~~y~~~g~~~------------~~~~~---------~~--~~~~~A~~~~~kal~l~P~~~~~~~~L~~~-------~k 131 (145)
T d1zu2a1 82 GNAYTSFAFLT------------PDETE---------AK--HNFDLATQFFQQAVDEQPDNTHYLKSLEMT-------AK 131 (145)
T ss_dssp HHHHHHHHHHC------------CCHHH---------HH--HHHHHHHHHHHHHHHHCTTCHHHHHHHHHH-------HT
T ss_pred HHHHHHcccch------------hhHHH---------HH--HhHHHhhhhhhcccccCCCHHHHHHHHHHH-------HH
Confidence 55554443221 11100 11 356889999999999999998888777665 45
Q ss_pred HHHHHHHHHhCCC
Q 046194 785 VAKARKAMKEAEV 797 (934)
Q Consensus 785 a~~~~~~m~~~~~ 797 (934)
|.++..+..++|+
T Consensus 132 a~~~~~e~~k~~~ 144 (145)
T d1zu2a1 132 APQLHAEAYKQGL 144 (145)
T ss_dssp HHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHhc
Confidence 5566666655553
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.03 E-value=0.018 Score=55.98 Aligned_cols=97 Identities=9% Similarity=0.007 Sum_probs=52.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhccCCCcchHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHhHHHHH-HHH
Q 046194 496 IENALLSCYGKCGEMDDCEKIFARMSERRDEVSWNSMISGYIH----NELLPKAMNLVWFMMQRGQRLDHFTFATV-LSA 570 (934)
Q Consensus 496 ~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~l-l~a 570 (934)
.+..|-..+.+.+++++|.+.|++..+..|..++..|-..|.. ..+...|...+......+...-...+..+ ...
T Consensus 4 ~~~~lG~~~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~~~a~~~l~~~~~~~ 83 (265)
T d1ouva_ 4 ELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSG 83 (265)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccccccchhhccccccccc
Confidence 3344555566677777777777776554466666556555554 45667777777766655422111111111 111
Q ss_pred HhchhhHHHHHHHHHHHHHhCC
Q 046194 571 CASVATLERGMEVHACGVRACL 592 (934)
Q Consensus 571 ~~~~~~~~~a~~i~~~~~~~~~ 592 (934)
.....+.+.+...+....+.|.
T Consensus 84 ~~~~~~~~~a~~~~~~a~~~g~ 105 (265)
T d1ouva_ 84 QGVSQNTNKALQYYSKACDLKY 105 (265)
T ss_dssp SSSCCCHHHHHHHHHHHHHTTC
T ss_pred cccchhhHHHHHHHhhhhhhhh
Confidence 2224456666666666665543
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=96.81 E-value=0.00071 Score=59.34 Aligned_cols=96 Identities=8% Similarity=0.058 Sum_probs=63.0
Q ss_pred HHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhccCCCcHH
Q 046194 672 CSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGRAGELDKIEEFINKMPITPNSLIWRTVLGACCRANCRKTEL 750 (934)
Q Consensus 672 ~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~~~ 750 (934)
|.+.+.+++|++.|+...+ +.|+ ...+..+..+|...+++..+.+ .. +.++.
T Consensus 7 ~~r~~~fe~A~~~~e~al~---~~P~~~~~~~~~g~~l~~~~~~~~~~e----------------------~~--~~~~~ 59 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYK---SNPLDADNLTRWGGVLLELSQFHSISD----------------------AK--QMIQE 59 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHSCHHH----------------------HH--HHHHH
T ss_pred HHHHccHHHHHHHHHHHHh---hCCcchHHHHHHHHHHHHhhhhhhhhH----------------------HH--HHHHH
Confidence 3444555556665555544 2333 4445555555444444333322 12 55688
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHHcCCC-----------hHHHHHHHHHHHh
Q 046194 751 GRKAANMLFEMEPQNAVNYVLLANMYASGGK-----------WEDVAKARKAMKE 794 (934)
Q Consensus 751 a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~-----------~~~a~~~~~~m~~ 794 (934)
|...++++++++|+++..|..++++|...|+ +++|.+.+++..+
T Consensus 60 Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~ 114 (145)
T d1zu2a1 60 AITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD 114 (145)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccc
Confidence 9999999999999999999999999988765 5777777776654
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.74 E-value=0.0019 Score=57.40 Aligned_cols=62 Identities=11% Similarity=-0.011 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCC-------C----CchHHHHHHHHHcCCChHHHHHHHHHHHh
Q 046194 731 LIWRTVLGACCRANCRKTELGRKAANMLFEMEPQ-------N----AVNYVLLANMYASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 731 ~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~-------~----~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 794 (934)
..|+.+..++... |+++.|...+++++++.|. . ...|..++.+|...|++++|.+.+++..+
T Consensus 56 ~~~~nlg~~~~~l--g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 56 FCHAGLAEALAGL--RSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc--CccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555 6666666666666554332 1 22578899999999999999999988764
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.74 E-value=0.0011 Score=64.66 Aligned_cols=124 Identities=12% Similarity=0.038 Sum_probs=82.2
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhhcCChH
Q 046194 638 ARHGHGDKALTLFSQMKLDGPLPD-HVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGRAGELD 715 (934)
Q Consensus 638 ~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~ 715 (934)
.+.|++++|+..+++.++. .|+ ...+..+...++..|++++|.+.|+...+ +.|+ ...+..+..++...+..+
T Consensus 7 L~~G~l~eAl~~l~~al~~--~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~---l~P~~~~~~~~l~~ll~a~~~~~ 81 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIK---LFPEYLPGASQLRHLVKAAQARK 81 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHhccccH
Confidence 3568888888888888884 555 56677788888888999999888888876 4565 444545555555555555
Q ss_pred HHHHHHHhC--CCCCCH-HHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCch
Q 046194 716 KIEEFINKM--PITPNS-LIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVN 768 (934)
Q Consensus 716 ~A~~~~~~m--~~~p~~-~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 768 (934)
++..-.... ...|+. ..+......+... |+.+.|...++++.+..|..+..
T Consensus 82 ~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~--gd~~~A~~~~~~a~e~~p~~~~~ 135 (264)
T d1zbpa1 82 DFAQGAATAKVLGENEELTKSLVSFNLSMVS--QDYEQVSELALQIEELRQEKGFL 135 (264)
T ss_dssp HHTTSCCCEECCCSCHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHCCCCCEE
T ss_pred HHHHHhhhhhcccCchHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHhcCCCCCcc
Confidence 544332221 123332 2333344455556 88888888888888888887655
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.69 E-value=0.0017 Score=51.88 Aligned_cols=71 Identities=10% Similarity=0.054 Sum_probs=50.1
Q ss_pred HHHHHHhhcCChHHHHHHHHhC----C----CCCC-HHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHH
Q 046194 703 CMVDLLGRAGELDKIEEFINKM----P----ITPN-SLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLA 773 (934)
Q Consensus 703 ~li~~l~~~g~~~~A~~~~~~m----~----~~p~-~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~ 773 (934)
.++..+.+.|++++|.+.+++. + ..++ ..++..|..++... |+++.|...++++++++|+++.++..+.
T Consensus 10 ~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~--g~~~~A~~~y~~aL~l~P~~~~a~~Nl~ 87 (95)
T d1tjca_ 10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQ--GDLDKALLLTKKLLELDPEHQRANGNLK 87 (95)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhc--CChHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence 3445555555555555555443 1 1222 45788888899998 9999999999999999999988877765
Q ss_pred HH
Q 046194 774 NM 775 (934)
Q Consensus 774 ~~ 775 (934)
.+
T Consensus 88 ~~ 89 (95)
T d1tjca_ 88 YF 89 (95)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.42 E-value=0.0092 Score=53.95 Aligned_cols=56 Identities=5% Similarity=-0.012 Sum_probs=29.1
Q ss_pred HHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhhcCChHHHHHHHHh
Q 046194 665 FVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGRAGELDKIEEFINK 723 (934)
Q Consensus 665 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~ 723 (934)
+..+..++...|++++|+..++.+.+ +.|. ...|..++.+|.+.|+.++|++.|++
T Consensus 70 ~~~la~~~~~~g~~~~Al~~~~~al~---~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~ 126 (179)
T d2ff4a2 70 HTAKAEAEIACGRASAVIAELEALTF---EHPYREPLWTQLITAYYLSDRQSDALGAYRR 126 (179)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCchHHHHHHHHHHH---hCCccHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 33444455555555555555555554 2232 44455555555555555555555544
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.40 E-value=0.0012 Score=71.73 Aligned_cols=113 Identities=10% Similarity=-0.083 Sum_probs=54.5
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHhccCCCCCc-ccccHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHH
Q 046194 595 DVVIGSALVDMYSKCGRIDYASRFFDLMPVRNV-YSWNSMISGYARHGHGDKALTLFSQMKLDGPLPD-HVTFVGVLSAC 672 (934)
Q Consensus 595 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~ 672 (934)
+...+..+...+.+.|+.++|...+.....++. .++..+...+...|++++|+..|++..+ +.|+ ...|+.+...+
T Consensus 119 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~--l~P~~~~~~~~Lg~~~ 196 (497)
T d1ya0a1 119 CRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQ--LVPSNGQPYNQLAILA 196 (497)
T ss_dssp ------------------------CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTBSHHHHHHHHHH
T ss_pred hHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcccHHHHHHHHHHHHH--HCCCchHHHHHHHHHH
Confidence 344455566666666777666666655443332 2455566666677777777777777776 3555 45677777777
Q ss_pred HhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhc
Q 046194 673 SHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRA 711 (934)
Q Consensus 673 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~ 711 (934)
...|+..+|...|.+... --.|-...+..|..++.+.
T Consensus 197 ~~~~~~~~A~~~y~ral~--~~~~~~~a~~nL~~~~~~~ 233 (497)
T d1ya0a1 197 SSKGDHLTTIFYYCRSIA--VKFPFPAASTNLQKALSKA 233 (497)
T ss_dssp HHTTCHHHHHHHHHHHHS--SSBCCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHh--CCCCCHHHHHHHHHHHHHh
Confidence 777777777777766654 1234455666666655543
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.33 E-value=0.0085 Score=47.55 Aligned_cols=60 Identities=7% Similarity=-0.110 Sum_probs=51.3
Q ss_pred HHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCC-------CchHHHHHHHHHcCCChHHHHHHHHHHHh
Q 046194 733 WRTVLGACCRANCRKTELGRKAANMLFEMEPQN-------AVNYVLLANMYASGGKWEDVAKARKAMKE 794 (934)
Q Consensus 733 ~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~-------~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 794 (934)
+-.+...+... |+++.|...+++++++.|.+ +.+|..|+.+|.+.|++++|.+.++++.+
T Consensus 8 c~~lG~~~~~~--g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~ 74 (95)
T d1tjca_ 8 SFELGKVAYTE--ADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (95)
T ss_dssp HHHHHHHHHHT--TCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHC--CCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHH
Confidence 44567778888 99999999999999887654 34688999999999999999999998875
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.32 E-value=0.0093 Score=52.63 Aligned_cols=66 Identities=9% Similarity=-0.041 Sum_probs=41.8
Q ss_pred cHHHHHHHHhhcCChHHHHHHHHhC--------CCCCC-----HHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCC
Q 046194 700 QFSCMVDLLGRAGELDKIEEFINKM--------PITPN-----SLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNA 766 (934)
Q Consensus 700 ~y~~li~~l~~~g~~~~A~~~~~~m--------~~~p~-----~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 766 (934)
.|+.+..+|...|++++|.+.+++. ...++ ..++..+..++... |+.++|...+++++++.|+..
T Consensus 57 ~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~l--g~~eeA~~~~~~Al~l~~~~~ 134 (156)
T d2hr2a1 57 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGL--GRGAEAMPEFKKVVEMIEERK 134 (156)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHH--HHHHHHHHHHHHHHHhhHHhh
Confidence 3445555566666666655555443 12222 22456677788888 899999999999888876553
Q ss_pred c
Q 046194 767 V 767 (934)
Q Consensus 767 ~ 767 (934)
.
T Consensus 135 ~ 135 (156)
T d2hr2a1 135 G 135 (156)
T ss_dssp S
T ss_pred c
Confidence 3
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.18 E-value=0.001 Score=64.76 Aligned_cols=118 Identities=13% Similarity=0.122 Sum_probs=85.9
Q ss_pred HhhCcHHHHHHHHHHhHHhhCCCCC-cccHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhccCCCcH
Q 046194 673 SHAGLVDEGFKHFKSMSQVYGLIPQ-LEQFSCMVDLLGRAGELDKIEEFINKM-PITPN-SLIWRTVLGACCRANCRKTE 749 (934)
Q Consensus 673 ~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~~ 749 (934)
.+.|++++|+..+++..+ ..|+ ...+..++.+|++.|++++|.+.++.. ...|+ ...+..+...+... +..+
T Consensus 7 L~~G~l~eAl~~l~~al~---~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~--~~~~ 81 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIK---ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAA--QARK 81 (264)
T ss_dssp TTTTCHHHHHHHHHHHHH---TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH--HHHH
T ss_pred HHCCCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc--cccH
Confidence 467999999999999987 4455 889999999999999999999999988 56775 44555555555444 3333
Q ss_pred HHHHHHHH-HHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 046194 750 LGRKAANM-LFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMKEA 795 (934)
Q Consensus 750 ~a~~~~~~-~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~ 795 (934)
.+...... ....+|++...+...+.++...|+.++|.+.++.+.+.
T Consensus 82 ~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 82 DFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp HHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 22222112 12224555566777889999999999999999888764
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=94.30 E-value=0.99 Score=36.08 Aligned_cols=141 Identities=11% Similarity=0.047 Sum_probs=100.0
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHHHHhhcCChHH
Q 046194 637 YARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVDLLGRAGELDK 716 (934)
Q Consensus 637 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~ 716 (934)
+...|..++..++..+.... .+..-|+-++.-....-+-+...+.++.+-+-|.+.|-.. .-.++.++.+.+...+
T Consensus 12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~C~N-lk~vv~C~~~~n~~se 87 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQN-LKSVVECGVINNTLNE 87 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSC-THHHHHHHHHTTCCCH
T ss_pred HHHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhhcCchhhhc-HHHHHHHHHHhcchHH
Confidence 44568888888888888763 3444566666666667777777888888876555554422 2334555555544322
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHHHhCC
Q 046194 717 IEEFINKMPITPNSLIWRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWEDVAKARKAMKEAE 796 (934)
Q Consensus 717 A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~ 796 (934)
..+--+...... |.-+.-...++.+++-+..+|+....++++|.+.|...++-+++.+.-++|
T Consensus 88 ---------------~vdlALd~lv~~--~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G 150 (161)
T d1wy6a1 88 ---------------HVNKALDILVIQ--GKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKG 150 (161)
T ss_dssp ---------------HHHHHHHHHHHT--TCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred ---------------HHHHHHHHHHHh--ccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHh
Confidence 233445566666 888888889999888888889999999999999999999999999998888
Q ss_pred Cc
Q 046194 797 VK 798 (934)
Q Consensus 797 ~~ 798 (934)
++
T Consensus 151 ~K 152 (161)
T d1wy6a1 151 EK 152 (161)
T ss_dssp CH
T ss_pred HH
Confidence 75
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=91.22 E-value=9 Score=39.06 Aligned_cols=54 Identities=6% Similarity=-0.079 Sum_probs=31.0
Q ss_pred HHHHHHhcCCHHHHHHHHHhhccCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 046194 500 LLSCYGKCGEMDDCEKIFARMSERR-DEVSWNSMISGYIHNELLPKAMNLVWFMMQRG 556 (934)
Q Consensus 500 li~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 556 (934)
.+..+.+.++++.....+. ..| +...-.....+....|+.++|...+..+-..|
T Consensus 78 ~l~~L~~~~~w~~~~~~~~---~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~ 132 (450)
T d1qsaa1 78 FVNELARREDWRGLLAFSP---EKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG 132 (450)
T ss_dssp HHHHHHHTTCHHHHHHHCC---SCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS
T ss_pred HHHHHHhccCHHHHHHhcc---CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Confidence 3445566677665444332 223 33333455566677788888877777766554
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.10 E-value=0.99 Score=36.50 Aligned_cols=50 Identities=12% Similarity=0.147 Sum_probs=23.8
Q ss_pred hHHHHHHHHhC-CCCC-CH-HHHHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCC
Q 046194 714 LDKIEEFINKM-PITP-NS-LIWRTVLGACCRANCRKTELGRKAANMLFEMEPQN 765 (934)
Q Consensus 714 ~~~A~~~~~~m-~~~p-~~-~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~ 765 (934)
+++++.++++. ...| +. ..|-.|.-+|.+. |+++.|...++++++++|+|
T Consensus 54 ~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yykl--gdy~~A~~~~~~~L~ieP~n 106 (124)
T d2pqrb1 54 ERLGVKILTDIYKEAESRRRECLYYLTIGCYKL--GEYSMAKRYVDTLFEHERNN 106 (124)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHH--hhHHHHHHHHHHHHccCCCc
Confidence 34455555444 1222 21 2344444455555 55555555555555555554
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.74 E-value=1.2 Score=35.90 Aligned_cols=68 Identities=9% Similarity=0.018 Sum_probs=40.8
Q ss_pred CChhhHHHHHHHHHhh---CcHHHHHHHHHHhHHhhCCCCC--cccHHHHHHHHhhcCChHHHHHHHHhC-CCCCCH
Q 046194 660 PDHVTFVGVLSACSHA---GLVDEGFKHFKSMSQVYGLIPQ--LEQFSCMVDLLGRAGELDKIEEFINKM-PITPNS 730 (934)
Q Consensus 660 p~~~t~~~ll~a~~~~---g~~~~a~~~~~~m~~~~~~~p~--~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p~~ 730 (934)
|...|-....-++.+. .++++|+.+|+...+. .|. ...+-.|.-+|.+.|++++|.+.++.+ .+.|+.
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~---~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n 106 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE---AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 106 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc---CchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCc
Confidence 3333433344455443 4556777777777652 232 345556677777888888888887776 556653
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=86.57 E-value=2.4 Score=34.88 Aligned_cols=46 Identities=11% Similarity=-0.108 Sum_probs=21.6
Q ss_pred ChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----hCcHHHHHHHHHHhHH
Q 046194 642 HGDKALTLFSQMKLDGPLPDHVTFVGVLSACSH----AGLVDEGFKHFKSMSQ 690 (934)
Q Consensus 642 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~ 690 (934)
+.++|+++|++..+.| .| .....|...|.+ ..+.++|.++|+...+
T Consensus 74 d~~~A~~~~~~aa~~g-~~--~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~ 123 (133)
T d1klxa_ 74 DLRKAAQYYSKACGLN-DQ--DGCLILGYKQYAGKGVVKNEKQAVKTFEKACR 123 (133)
T ss_dssp CHHHHHHHHHHHHHTT-CH--HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHhhhhccC-cc--hHHHHHHHHHHcCCccCCCHHHHHHHHHHHHH
Confidence 3455666666655544 12 222223333332 2356666666665544
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=85.56 E-value=21 Score=36.14 Aligned_cols=350 Identities=12% Similarity=-0.010 Sum_probs=181.9
Q ss_pred HHHHHHHhcCChHHHHHHHhhCCCCCccchHHHHHHHHhCCccHHHHHHHHHHHHHcCC-CCCcccHHHHHHHHhccCCc
Q 046194 397 ALLSLYADAGYLSRCLKVFFLMPEHDQVSWNSVIGAFADSEALVSEAVKYYLDMRRAGW-SPNGVTFINILAAASSFSMG 475 (934)
Q Consensus 397 ~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~a~~~~~~~ 475 (934)
..+..+.+.++++.....+..-+ .+...--....+..+.|+. .+|...+...-..|. .|+
T Consensus 77 ~~l~~L~~~~~w~~~~~~~~~~p-~~~~~~c~~~~A~~~~g~~-~~a~~~~~~lW~~~~~~p~----------------- 137 (450)
T d1qsaa1 77 RFVNELARREDWRGLLAFSPEKP-GTTEAQCNYYYAKWNTGQS-EEAWQGAKELWLTGKSQPN----------------- 137 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHCCSCC-SSHHHHHHHHHHHHHTTCH-HHHHHHHHHHHSCSSCCCT-----------------
T ss_pred HHHHHHHhccCHHHHHHhccCCC-CCHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhcCCCCch-----------------
Confidence 34456667777777666554322 2333333556677778888 888888777765542 222
Q ss_pred hHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 046194 476 KLGHQVHAQVIKYNVANETTIENALLSCYGKCGEMDDCEKIFARMSERRDEVSWNSMISGYIHNELLPKAMNLVWFMMQR 555 (934)
Q Consensus 476 ~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 555 (934)
....++....+.|... ....-.-+......|+...|..+...+... ........+..... ...+..... .
T Consensus 138 -~c~~l~~~~~~~~~lt-~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~-~~~~~~a~~~l~~~---p~~~~~~~~---~- 207 (450)
T d1qsaa1 138 -ACDKLFSVWRASGKQD-PLAYLERIRLAMKAGNTGLVTVLAGQMPAD-YQTIASAIISLANN---PNTVLTFAR---T- 207 (450)
T ss_dssp -HHHHHHHHHHHTTCSC-HHHHHHHHHHHHHTTCHHHHHHHHHTCCGG-GHHHHHHHHHHHHC---GGGHHHHHH---H-
T ss_pred -HHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcCChhhHHHHHhhCChh-HHHHHHHHHHHHhC---hHhHHHHHh---c-
Confidence 2233444444444333 333334555666678888888888776553 33333444444322 222222211 1
Q ss_pred CCCCCHhHHHHHHHHHhch--hhHHHHHHHHHHHHHhCCCCcHhHH---HHHHHHHHhcCCHHHHHHHhccCCC--CCcc
Q 046194 556 GQRLDHFTFATVLSACASV--ATLERGMEVHACGVRACLEFDVVIG---SALVDMYSKCGRIDYASRFFDLMPV--RNVY 628 (934)
Q Consensus 556 g~~p~~~t~~~ll~a~~~~--~~~~~a~~i~~~~~~~~~~~~~~~~---~~li~~y~~~g~~~~A~~~~~~~~~--~~~~ 628 (934)
..++......+..+..+. .+.+.+..++............... ..+...+...+..+.|...++.... .+..
T Consensus 208 -~~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~ 286 (450)
T d1qsaa1 208 -TGATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTS 286 (450)
T ss_dssp -SCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHH
T ss_pred -CCCChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccchH
Confidence 223333333333343332 4556666666665543222221111 1222223345556666666654431 2222
Q ss_pred cccHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhCcHHHHHHHHHHhHHhhCCCCCcccHHHHHH-H
Q 046194 629 SWNSMISGYARHGHGDKALTLFSQMKLDGPLPDHVTFVGVLSACSHAGLVDEGFKHFKSMSQVYGLIPQLEQFSCMVD-L 707 (934)
Q Consensus 629 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~-~ 707 (934)
...-.+......+++..+...|+.|..... -...-.--+..+....|+.++|..+|...... ++ -|.-|.. .
T Consensus 287 ~~~w~~~~al~~~~~~~~~~~~~~l~~~~~-~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~----~~--fYG~LAa~~ 359 (450)
T d1qsaa1 287 LIERRVRMALGTGDRRGLNTWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQQ----RG--FYPMVAAQR 359 (450)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS----CS--HHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHhcCcccc-cHHHHHHHHHHHHHHcCChhhHHHHHHHHhcC----CC--hHHHHHHHH
Confidence 222234445567888888888887743211 11222234567788889999999998887541 32 3444432 2
Q ss_pred HhhcCChHHHHHHHHhCCCCCCHH-H---HHHHHHHHHhccCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChH
Q 046194 708 LGRAGELDKIEEFINKMPITPNSL-I---WRTVLGACCRANCRKTELGRKAANMLFEMEPQNAVNYVLLANMYASGGKWE 783 (934)
Q Consensus 708 l~~~g~~~~A~~~~~~m~~~p~~~-~---~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~ 783 (934)
++..-.+.. ...+..+... . -..-+..+... |....|++.+..+.+.- ++.-...++.+..+.|.++
T Consensus 360 Lg~~~~~~~-----~~~~~~~~~~~~~~~~~~ra~~L~~~--g~~~~A~~e~~~l~~~~--~~~~~~~la~lA~~~g~~~ 430 (450)
T d1qsaa1 360 IGEEYELKI-----DKAPQNVDSALTQGPEMARVRELMYW--NLDNTARSEWANLVKSK--SKTEQAQLARYAFNNQWWD 430 (450)
T ss_dssp TTCCCCCCC-----CCCCSCCCCHHHHSHHHHHHHHHHHT--TCHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTTCHH
T ss_pred cCCCCCCCc-----CCCCccHHHhhhcChHHHHHHHHHHc--CCchHHHHHHHHHHhCC--CHHHHHHHHHHHHHCCChh
Confidence 221111000 0001111111 0 01123344556 88999999888776543 4566778899999999999
Q ss_pred HHHHHHHHH
Q 046194 784 DVAKARKAM 792 (934)
Q Consensus 784 ~a~~~~~~m 792 (934)
.|.......
T Consensus 431 ~aI~a~~~~ 439 (450)
T d1qsaa1 431 LSVQATIAG 439 (450)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 988765444
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=83.96 E-value=6.4 Score=32.04 Aligned_cols=14 Identities=21% Similarity=0.546 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHcC
Q 046194 441 SEAVKYYLDMRRAG 454 (934)
Q Consensus 441 ~~A~~l~~~m~~~g 454 (934)
++|+++|++..+.|
T Consensus 10 ~~A~~~~~kaa~~g 23 (133)
T d1klxa_ 10 KKAIQYYVKACELN 23 (133)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCC
Confidence 67777777766655
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=80.99 E-value=12 Score=29.82 Aligned_cols=117 Identities=6% Similarity=-0.037 Sum_probs=60.6
Q ss_pred cCCchHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccCC--------------------CcchHHH
Q 046194 472 FSMGKLGHQVHAQVIKYNVANETTIENALLSCYGKCGEMDDCEKIFARMSERR--------------------DEVSWNS 531 (934)
Q Consensus 472 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p--------------------~~~~~~~ 531 (934)
.|.++++.++.....++. +..-||.+|--....-+-+....+++.+..-- +....+.
T Consensus 15 dG~ve~Gveii~k~~~ss---~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~C~Nlk~vv~C~~~~n~~se~vdl 91 (161)
T d1wy6a1 15 DGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINNTLNEHVNK 91 (161)
T ss_dssp TTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTTCCCHHHHH
T ss_pred hhhHHhHHHHHHHHcccC---CccccceeeeecccccchHHHHHHHHHHhhhcCchhhhcHHHHHHHHHHhcchHHHHHH
Confidence 455666666666655442 22223333333333334444444444443310 2333444
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHhHHHHHHHHHhchhhHHHHHHHHHHHHHhCC
Q 046194 532 MISGYIHNELLPKAMNLVWFMMQRGQRLDHFTFATVLSACASVATLERGMEVHACGVRACL 592 (934)
Q Consensus 532 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~ 592 (934)
.++...++|+-++-.++++++.+. -+|++..+..+..||.+.|+..++.+++.++-+.|+
T Consensus 92 ALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~ 151 (161)
T d1wy6a1 92 ALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 151 (161)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence 555566666666666666665543 355555566666666666666666666666666554
|