Citrus Sinensis ID: 046217

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------29
Protein Sequence
MDDSRRNKYGQSSDEIPEPPPPTRQYFEPQQPAPFPPLPPAMGYPPAMGYPPGYRNGYDQQHYQQGPPPSPDMYYAPPHCPHQDPGPPSSFAILTTMMLFVFFTFIVGLVLMFLIARPKFPIFHVETLAVTNFSVANDDFTSAWEINLVVENRNFGANVHFDRIQSFIYFNTDDLLASSHFDHPTKDVTVKANEKGTIDIKLSTADYKQSVPAPGKRVMEEMRNIRETGVVPFSLRAFAWSQIETGLFYTETKHIQSRIICEDLKVHFEGDTGNGKLNGKSKDCVVDL
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHEEEEEEccccEEEEEEEEEEEEEcccccEEEEEEEEEEEEccccEEEEEEccEEEEEEEccccccccccccccccccEEEcccccEEEEEEEccccccccccccHHHHHHHHHHHHcccEEEEEEEEEEEEEEEcEEEEcEEEEEEEEEEccEEEEcccccccccccccccccEEcc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEEEEEEcccccEEEEEEEEEEEEEccccEEEEEEcEEEEEEEEccccccccccccccccccEEccccccEEEEEEccccccccccHHHHHHHHHHHHHHcccEEEEEEEEEEEEEEEccccccccEEEEEEEEEccEEEEEEccccccccccccccEEccc
Coil and Loop (DISEMBL)
mddsrrnkygqssdeipepppptrqyfepqqpapfpplppamgyppamgyppgyrngydqqhyqqgpppspdmyyapphcphqdpgppssFAILTTMMLFVFFTFIVGLVLMFLIarpkfpifhVETLAVTnfsvanddftsAWEINLVVEnrnfganvhfdriqsfiyfntddllasshfdhptkdvtvkanekgtidiklstadykqsvpapgkrVMEEMRNIRETGVVPFSLRAFAWSQIETGLFYTETKHIQSRIICEdlkvhfegdtgngklngkskdcvvdl
Flexible Loop (DISEMBL)
mddsrrnkygqssdeipeppppTRQYFEPQQPAPFPPLPPAMGYPPAMGYPPGYRNGYDQQHYQQGPPPSPDMYYAPPHCPHQDPGPPSSFAILTTMMLFVFFTFIVGLVLMFLIARPKFPIFHVETLAVTNFSVANDDFTSAWEINLVVENRNFGANVHFDRIQSFIYFNTDDLLASSHFDhptkdvtvkanekgtidiklstadykqsvpapgkrVMEEMRNIRETGVVPFSLRAFAWSQIETGLFYTETKHIQSRIICEDLKVHFegdtgngklngkskdcvvdl
Low Complexity Region (SEG)
MDDSRRNKYGQSSDEIPEPPPPTRQYFEpqqpapfpplppamgyppamgyppgyRNGYDQQHYQQGpppspdmyyapphcphqdpgppSSFAilttmmlfvfftfivGLVLMFLIARPKFPIFHVETLAVTNFSVANDDFTSAWEINLVVENRNFGANVHFDRIQSFIYFNTDDLLASSHFDHPTKDVTVKANEKGTIDIKLSTADYKQSVPAPGKRVMEEMRNIRETGVVPFSLRAFAWSQIETGLFYTETKHIQSRIICEDLKVHFEGDTGNGKLNGKSKDCVVDL
Disordered region (IsUnstruct)
******************************************************************************************FAILTTMMLFVFFTFIVGLVLMFLIARPKFPIFHVETLAVTNFSVANDDFTSAWEINLVVENRNFGANVHFDRIQSFIYFNTDDLLASSHFDHPTKDVTVKA***GTIDIKL********************RNIRETGVVPFSLRAFAWSQIETGLFYTETKHIQSRIICEDLKVHFEG******************
Disordered Region (DISOPRED)
**************************************************************************************PPSSFAILTTMMLFVFFTFIVGLVLMFLIARPKFPIFHVETLAVTNFSVANDDFTSAWEINLVVENRNFGANVHFDRIQSFIYFNTDDLLASSHFDHPTKDVTVKANEKGTIDIKLSTAD******************IRETGVVPFSLRAFAWSQIETGLFYTETKHIQSRIICEDLKVHF*************KDCVVDL
Disordered Region (DISEMBL)
*******************PPPTRQYFEPQQPAPFPPLPPAMGYPPAMGYPPGYRNGYDQQHYQQGPPPSPDMYYAPPHCPHQDPGPPSSFAILTTMMLFVFFTFIVGLVLMFLIARPKFPIFHVETLAVTNFSVANDDFTSAWEINLVVENRNFGANVHFDRIQSFIYFNTDDLLASSHFDHPTKDVTVKANEKGTIDIKLSTADYKQSVPAPGKRVMEEMRNIRETGVVPFSLRAFAWSQIETGLFYTETKHIQSRIICEDLKVHFEGDTGNGKLNGKSKDCVVDL
Disordered Region (DISPRO)
**************EIPEPPPPTRQYFEPQQPAPFPPLPPAMGYPPAMGYPPGYRNGYDQQHYQQGPPPSPDMYYAPPHCPHQDPGPPSSFAILTTMMLFVFFTFIVGLVLMFLIARPKFPIFHVETLAVTNFSVANDDFTSAWEINLVVENRNFGANVHFDRIQSFIYFNTDDLLASSHFDHPTKDVTVKANEKGTIDIKLSTADYKQSVPAPGKRVMEEMRNIRETGVVPFSLRAFAWSQIETGLFYTETKHIQSRIICEDLKVHFEGDTG***************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDDSRRNKYGQSSDEIPEPPPPTRQYFEPQQPAPFPPLPPAMGYPPAMGYPPGYRNGYDQQHYQQGPPPSPDMYYAPPHCPHQDPGPPSSFAILTTMMLFVFFTFIVGLVLMFLIARPKFPIFHVETLAVTNFSVANDDFTSAWEINLVVENRNFGANVHFDRIQSFIYFNTDDLLASSHFDHPTKDVTVKANEKGTIDIKLSTADYKQSVPAPGKRVMEEMRNIRETGVVPFSLRAFAWSQIETGLFYTETKHIQSRIICEDLKVHFEGDTGNGKLNGKSKDCVVDL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	288
255583572	305	conserved hypothetical protein [Ricinus	0.725	0.685	0.339	3e-25
224138350	273	predicted protein [Populus trichocarpa]	0.854	0.901	0.295	4e-23
297816524	295	hypothetical protein ARALYDRAFT_906612 [	0.791	0.772	0.326	8e-23
15231224	300	hydroxyproline-rich glycoprotein family	0.746	0.716	0.334	2e-22
224091415	270	predicted protein [Populus trichocarpa]	0.781	0.833	0.296	2e-19
449534456	241	PREDICTED: uncharacterized protein LOC10	0.739	0.883	0.263	2e-17
255638614	281	unknown [Glycine max]	0.857	0.879	0.272	5e-14
356572613	281	PREDICTED: uncharacterized protein LOC10	0.861	0.882	0.266	6e-13
225464826	239	PREDICTED: uncharacterized protein LOC10	0.670	0.807	0.247	2e-11
356537184	283	PREDICTED: uncharacterized protein LOC10	0.677	0.689	0.281	1e-10

>gi|255583572|ref|XP_002532542.1| conserved hypothetical protein [Ricinus communis] gi|223527731|gb|EEF29836.1| conserved hypothetical protein [Ricinus communis]

 Score =  121 bits (304), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 78/230 (33%), Positives = 125/230 (54%), Gaps = 21/230 (9%)

Query: 65  QGPPPS---PDMYYAPPHCPHQDPGPPSSF--AILTTMMLFVFFTFIVGLVLMFLIARPK 119
           Q PP +     MY   P C        + F   I+  ++  +  T  +  + M++I RP 
Sbjct: 87  QAPPTAYYNTQMYQTQPECR------INGFLRGIIGGLVFLLILTCAIS-IFMWIILRPV 139

Query: 120 FPIFHVETLAVTNFSVAND-DFTSAWEINLVVENRNFGANVHFDRIQSFIYFNTDDLLAS 178
            P+FHV  L+V+NF++++   F + W+ N+ V N N    V+FD+I+ FIY+N DDLLA+
Sbjct: 140 IPVFHVNNLSVSNFNLSSSPTFHANWDANITVGNPNTKLKVYFDQIEVFIYYNEDDLLAT 199

Query: 179 SHFDHPTKDVTVKANEKGTIDIKLSTADYKQSVPAPGKRVMEEM-RNIRETGVVPFSLRA 237
           S F +P   +    N      ++ + AD KQ+    G  V+++M ++   TG V F +R 
Sbjct: 200 S-FSNPFF-LETGGNSVVQAKLEANNADRKQA--GVGSWVVDKMAKDKSTTGNVTFDIRM 255

Query: 238 FAWSQIETGLFYTETKHIQSRIICEDLKVHFEGDTGNGKL-NGKSKDCVV 286
             WS  ++G ++   +H+  R+ CEDL V F G++G     NGKSKDC+V
Sbjct: 256 ALWSTFKSGSWW--ARHVTIRVYCEDLVVSFMGNSGTANFANGKSKDCLV 303

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224138350|ref|XP_002322792.1| predicted protein [Populus trichocarpa] gi|222867422|gb|EEF04553.1| predicted protein [Populus trichocarpa]

 Score =  114 bits (285), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 80/271 (29%), Positives = 132/271 (48%), Gaps = 25/271 (9%)

Query: 28  EPQQPAPFPP----LPPAMGYPPAMGYPPGYRNGYDQQHY----QQGPPPSPDMYYAPPH 79
           +P +   FP      PP M YPP +GY P   +            + PPP+   YY    
Sbjct: 14  QPSESTLFPSGRHKRPPPMSYPPTLGYAPPPPHSAYPPPGYYPYARAPPPA---YYVNST 70

Query: 80  CPHQDPGPPSSF--AILTTMMLFVFFTFIVGLVLMFLIARPKFPIFHVETLAVTNFSVAN 137
              Q     SSF   IL+T++  V F F + L+ M L  RP+ P+FHVE  +V NF+   
Sbjct: 71  VHQQGCQKSSSFLQGILSTIIFLVMFIFTLQLI-MLLALRPELPVFHVEDFSVLNFNATM 129

Query: 138 DDFTSAWEINLVVENRNFGANVHFDRIQSFIYFNTDDLLASSHFDHPTKDVTVKANEKGT 197
             FT+ WE  + V+N N    + F  I S +Y++ D +LAS++    +   +++   +  
Sbjct: 130 PTFTAIWEAYVSVKNPNTRLKIDFGPIHSHMYYDKDYILASAN----SPKFSMETKTRNV 185

Query: 198 IDIKLSTADYKQSVPAPGKRVMEEMRNIRETGVVPFSLR-AFAWSQIETGLFYTETKHIQ 256
           I  +LS  +   SV +   RV++++   R  G V F  R  F+        F +  + ++
Sbjct: 186 IHARLSANNTDNSVES---RVVDKLAKERSNGAVGFHFRMVFSTCSRSGSWFRSNPRSME 242

Query: 257 SRIICEDLKVHFEGDTGNGKLNGKS-KDCVV 286
             ++CED+K+ F G +G+G +   + +DC+V
Sbjct: 243 --VVCEDIKIAFAGASGDGNIAASADRDCLV 271

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297816524|ref|XP_002876145.1| hypothetical protein ARALYDRAFT_906612 [Arabidopsis lyrata subsp. lyrata] gi|297321983|gb|EFH52404.1| hypothetical protein ARALYDRAFT_906612 [Arabidopsis lyrata subsp. lyrata]

 Score =  113 bits (283), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 85/260 (32%), Positives = 124/260 (47%), Gaps = 32/260 (12%)

Query: 47  AMGYPPGYRNGYD---------QQH-YQQGPPPSPDMYYAPPHCPHQDP---GPPSSFAI 93
            MGYP GY              QQ+ Y Q PP S   YY   +   Q+P    P SS  +
Sbjct: 46  VMGYP-GYHQAPPYPNYPNAPYQQYPYAQAPPAS---YYGSSYPAQQNPVYQRPASSGFV 101

Query: 94  --LTTMMLFVFFTFIVGLVLMFLIARPKFPIFHVETLAVTNFSVANDDFTSAWEINLVVE 151
             + T ++ +     +   + +LI RP+ P+F V   +V+NF++    F++ W  NL +E
Sbjct: 102 RGIFTGLIVIVVLLCISTTITWLILRPRIPLFSVNNFSVSNFNLTGPVFSAQWTANLTIE 161

Query: 152 NRNFGANVHFDRIQSFIY----FNTDDLLASSHFDHPTKDVTVKANEKGTIDIKLSTADY 207
           N+N     +FDRIQ  IY       DD LA++ F      V V+  +   I   L+  D 
Sbjct: 162 NQNTKLKGYFDRIQGLIYHQNAVGEDDFLATAFFP----PVFVETKKSVVIGETLTAGDK 217

Query: 208 KQSVPAPGKRVMEEMRNIRETGVVPFSLRAFAWSQIETGLFYTETKHIQSRIICEDLKVH 267
           +Q  P     V EEM+  R+TG V F+LR   W   +T  +    + +  ++ C  LKV 
Sbjct: 218 EQ--PKVPSWVGEEMKKERDTGTVSFNLRMAVWVTFKTDGWAARERGL--KVFCGKLKVG 273

Query: 268 FEGDTGNGK-LNGKSKDCVV 286
           FEG++GNG  L  K   CVV
Sbjct: 274 FEGNSGNGAVLLPKPLPCVV 293

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15231224|ref|NP_190814.1| hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana] gi|4886281|emb|CAB43432.1| putative protein [Arabidopsis thaliana] gi|332645427|gb|AEE78948.1| hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana]

 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 80/239 (33%), Positives = 118/239 (49%), Gaps = 24/239 (10%)

Query: 60  QQH-YQQGPPPSPDMYYAPPHCPHQDP---GPPSS---FAILTTMMLFVFFTFIVGLVLM 112
           QQ+ Y Q PP S   YY   +   Q+P    P SS     I T +++ V     +   + 
Sbjct: 72  QQYPYAQAPPAS---YYGSSYPAQQNPVYQRPASSGFVRGIFTGLIVLVVL-LCISTTIT 127

Query: 113 FLIARPKFPIFHVETLAVTNFSVANDDFTSAWEINLVVENRNFGANVHFDRIQSFIY--- 169
           +L+ RP+ P+F V   +V+NF+V    F++ W  NL +EN+N     +FDRIQ  +Y   
Sbjct: 128 WLVLRPQIPLFSVNNFSVSNFNVTGPVFSAQWTANLTIENQNTKLKGYFDRIQGLVYHQN 187

Query: 170 -FNTDDLLASSHFDHPTKDVTVKANEKGTIDIKLSTADYKQSVPAPGKRVMEEMRNIRET 228
               D+ LA++ F    + V V+  +   I   L+  D +Q  P     V++EM+  RET
Sbjct: 188 AVGEDEFLATAFF----QPVFVETKKSVVIGETLTAGDKEQ--PKVPSWVVDEMKKERET 241

Query: 229 GVVPFSLRAFAWSQIETGLFYTETKHIQSRIICEDLKVHFEGDTGNGK-LNGKSKDCVV 286
           G V FSLR   W   +T  +      +  ++ C  LKV FEG +GNG  L  K   CVV
Sbjct: 242 GTVTFSLRMAVWVTFKTDGWAARESGL--KVFCGKLKVGFEGISGNGAVLLPKPLPCVV 298

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224091415|ref|XP_002309246.1| predicted protein [Populus trichocarpa] gi|222855222|gb|EEE92769.1| predicted protein [Populus trichocarpa]

 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/246 (29%), Positives = 117/246 (47%), Gaps = 21/246 (8%)

Query: 32  PAPFPPLPPAMGYPPAMGYPPGYRNGYDQQHYQQGPPPSPDMYYAPPH--------CPHQ 83
           P+    L P  GYPPAMGYPP             G PP     YA             HQ
Sbjct: 27  PSASHDLNPGAGYPPAMGYPPSMDYPPPPPGQYPGYPPPGYYPYAQAPPAAAYYNATVHQ 86

Query: 84  DPG--PPSSFA--ILTTMMLFVFFTFIVGLVLMFLIARPKFPIFHVETLAVTNFSVANDD 139
             G    S F+   LTT++      F   ++ M+L+ RP+ P+FHV+  +V+N +     
Sbjct: 87  QQGYERSSGFSRCFLTTIIFLTLLIFTSSII-MWLVLRPQLPVFHVDNFSVSNLNATLPT 145

Query: 140 FTSAWEINLVVENRNFGANVHFDRIQSFIYFNTDDLLASSHFDHPTKDVTVKANEKGTID 199
           FT+ WE NL V N N    + F  +Q+F+++  D LLAS+    P    +++    G I+
Sbjct: 146 FTANWEANLTVRNPNTRLKIEFSELQNFVFYEEDYLLASAITSRP---FSLETKTSGVIN 202

Query: 200 IKLSTADYKQSVPAPGKRVMEEMRNIRETGVVPFSLRAFAWSQIETGLFYTETKHIQSRI 259
            KLS  +    V      V++++   R  G V F+ R   W+   +GL++   +++  ++
Sbjct: 203 AKLSENNKDNLVE---NWVVDKLAKERSNGSVSFNFRMLVWTTFRSGLWW--KRNLSIKV 257

Query: 260 ICEDLK 265
           +CED++
Sbjct: 258 MCEDIQ 263

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449534456|ref|XP_004174178.1| PREDICTED: uncharacterized protein LOC101227635 [Cucumis sativus]

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 60/228 (26%), Positives = 113/228 (49%), Gaps = 15/228 (6%)

Query: 62  HYQQGPPPSPDMYYAPPHCPHQDPGPPSSFAILTTMMLFVFFTFIVGLVLMFLIARPKFP 121
           +Y Q PP +   YY  P               + T ++ +     +  ++ +++ RP+ P
Sbjct: 24  YYAQAPPAA---YYNNPQNYRAQTVSAGFLRGIVTALILLVAVMTLSSIITWIVLRPQIP 80

Query: 122 IFHVETLAVTNFSVANDDFTSAWEINLVVENRNFGANVHFDRIQSFIYFNTDDLLASSHF 181
           +F V++ +V+NF+++  +++  W  +L VEN N    V+ +RIQSF+ +  ++ LA S+ 
Sbjct: 81  VFKVDSFSVSNFNISKLNYSGNWNGSLTVENPNHKLTVNIERIQSFVNYK-ENTLAMSYA 139

Query: 182 DHPTKDVTVKANEKGTIDIKLSTADYKQSVPAPGKRVMEEMRNIRETGVVPFSLRAFAWS 241
           D    DV     +   + +KL+++      P       E++   + +G V F+LR FAW+
Sbjct: 140 DPFFIDV----EKSSQMRVKLTSSSPDD--PGNWLETEEKVGQEKASGTVSFNLRFFAWT 193

Query: 242 QIETGLFYTETKHIQSRIICEDLKVHFEGDTGNGKL---NGKSKDCVV 286
              +G ++  T+ I  ++ CEDLK+ F G      +   +  SK C V
Sbjct: 194 AFRSGSWW--TRRIVMKVFCEDLKLAFTGPAATHGVYLADAHSKTCSV 239

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255638614|gb|ACU19613.1| unknown [Glycine max]

 Score = 84.7 bits (208), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 75/275 (27%), Positives = 118/275 (42%), Gaps = 28/275 (10%)

Query: 17  PEPPPPTRQYFEPQQPAPFPPLPPAMGYPPAMGYPPGYRNGYDQQ--HYQQGPPPSPDMY 74
           P   PP   Y+ PQ  AP P   P  GYPP  GY P Y N Y QQ  HY  GP      Y
Sbjct: 30  PTVAPPQMMYYYPQGYAPQPM--PHQGYPP--GYAP-YPNEYHQQPYHYPAGP------Y 78

Query: 75  YAPPHCPHQDPGPPSSFAILTTMMLFVFFTFIVGLVLMFLIARPKFPIFHVETLAVTNFS 134
           ++ P   H   G  +           +F    V  ++M L+  P+ P++ + +L+V NF+
Sbjct: 79  FSTPPTYHNGGGSKAFIRGFIMCSCLIFTCLFVATLIMALVLHPQLPVYTINSLSVANFN 138

Query: 135 VANDDFTSAWEINLVVENRNFGANVHFDRIQSFIYFNTDDLLASSHFDHPTKDVTVKANE 194
                 T+ W  ++++ N N       +R+     +   DLL  ++    +     + N+
Sbjct: 139 TT-QLLTANWNTSIMIHNIN-------NRLIGLFSYFKVDLLHKNYIVAVSYVPNFELNK 190

Query: 195 KGTIDIKLSTADYKQSVPAPGKRVMEEMRNIRETGVVPFSLRAFAWSQIETGLFYT-ETK 253
                I  +      S P   K  +++M   +  G V F+LR    + + T +F T  T+
Sbjct: 191 NEVKRIDATPLSNGFSFP---KSNLDDMAKEQAGGSVTFALR---MTSMVTFMFSTMSTR 244

Query: 254 HIQSRIICEDLKVHFEGDTGNGKLNGKSKDCVVDL 288
           +     +C  LKV F+ +TGNG L+   K     L
Sbjct: 245 NTLILALCSGLKVVFQNNTGNGVLDNAGKPISCQL 279

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356572613|ref|XP_003554462.1| PREDICTED: uncharacterized protein LOC100808758 [Glycine max]

 Score = 80.9 bits (198), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 73/274 (26%), Positives = 113/274 (41%), Gaps = 26/274 (9%)

Query: 17  PEPPPPTRQYFEPQQPAPFPPLPPAMGYPPAMGYPPGYRNGYDQQ--HYQQGPPPSPDMY 74
           P   PP   Y+ PQ  AP P   P  GYPP  GY P Y N Y QQ  HY  GP      Y
Sbjct: 30  PTVAPPQMMYYYPQGYAPQPM--PHQGYPP--GYAP-YPNEYHQQPYHYPAGP------Y 78

Query: 75  YAPPHCPHQDPGPPSSFAILTTMMLFVFFTFIVGLVLMFLIARPKFPIFHVETLAVTNFS 134
           ++ P   H   G  +           +F    V  ++M L+  P+ P++ + +L+V NF+
Sbjct: 79  FSTPPTYHNGGGSKAFIRGFIMCSCLIFTCLFVATLIMALVLHPQLPVYTINSLSVANFN 138

Query: 135 VANDDFTSAWEINLVVENRNFGANVHFDRIQSFIYFNTDDLLASSHFDHPTKDVTVKANE 194
                 T+ W  ++++ N N       +R+         DLL  ++    +     + N+
Sbjct: 139 TT-QLLTANWNTSIMIHNIN-------NRLIGLFSDFKVDLLHKNYIVAVSYVPNFELNK 190

Query: 195 KGTIDIKLSTADYKQSVPAPGKRVMEEMRNIRETGVVPFSLRAFAWSQIETGLFYTETKH 254
                I  +      S P   K  +++M   +  G V F+LR  +     +    T    
Sbjct: 191 NEVKRIDATPLSNGFSFP---KSNLDDMAKEQAGGSVTFALRMTSMVTFMSSTMSTRNTL 247

Query: 255 IQSRIICEDLKVHFEGDTGNGKLNGKSKDCVVDL 288
           I +  +C  LKV F+ +TGNG L+   K     L
Sbjct: 248 ILA--LCSGLKVVFQNNTGNGVLDNAGKPISCQL 279

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225464826|ref|XP_002272164.1| PREDICTED: uncharacterized protein LOC100258714 [Vitis vinifera]

 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/218 (24%), Positives = 103/218 (47%), Gaps = 25/218 (11%)

Query: 74  YYAPPHCPHQDPGPPSSFAILTTMMLFVFFTFIVGLVL--MFLIARPKFPIFHVETLAVT 131
           Y+APP+       P ++F       +  FF  IVG ++  ++L+ RP+ P F V + +++
Sbjct: 44  YHAPPYS-----SPRATFLRRFLAAMIAFF-IIVGTIIFIVWLVLRPRLPYFSVASASLS 97

Query: 132 NFSVANDDFTSAWEINLVVENRNFGANVHFDRIQSFIYFNTDDLLASSHFDHPTKDVTVK 191
           +F+V+    +  W I+  V N N   ++ +DRI+S I + +  L             T+ 
Sbjct: 98  SFNVSASQLSGEWNISFDVRNPNKKISISYDRIESSIAYKSATL----------SQTTIA 147

Query: 192 ANEKGTIDIKLSTADYKQSVPAPGKRV-MEEMRNIRETGVVPFSLRAFAWSQIETGLFYT 250
              +GT +    TA +     A G  V +  +   R  G V F+++ FA    ++G++  
Sbjct: 148 PFYQGTKNETTVTATFA----AIGAYVDVLAINAERTRGSVSFTVKVFARVSFKSGVWKA 203

Query: 251 ETKHIQSRIICEDLKVHFEGDTGNGKLNGKSKDCVVDL 288
            ++ + ++  C D+ +    +   G L G S++C V L
Sbjct: 204 RSRFLSAQ--CNDIALGLPSNASRGSLVGGSRECRVGL 239

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356537184|ref|XP_003537109.1| PREDICTED: uncharacterized protein LOC100780240 [Glycine max]

 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 62/220 (28%), Positives = 102/220 (46%), Gaps = 25/220 (11%)

Query: 74  YYAPPHCPHQDPGPPSSFA---ILTTMMLFVFFTFIVGLVLMFLIARPKFPIFHVETLAV 130
           YY PP   +Q   P + F    IL  MM+  FF F+  LVL  ++ RP+ P++ V +  V
Sbjct: 76  YYGPPPT-YQTSSPGTRFIRSFILCFMMILTFF-FLSSLVLALML-RPELPVYKVVSFNV 132

Query: 131 TNFSVANDDFTSAWEINLVVENRNFGANVHFDRIQSFIYFNTDDLLASSH---FDHPTKD 187
            NF+         W+  + ++N N     +F   +  + +  D ++A +H   F   T D
Sbjct: 133 NNFTTT-PTLAGQWDTKISIDNPNDKLVAYFSNFKVDVAYK-DGVMAINHAPGFVLNTND 190

Query: 188 VTVKANEKGTIDIKLSTADYKQSVPAPGKRVMEEMRNIRETGVVPFSLRAFAWSQIETGL 247
                     +D+ ++    + +V    K  M+++   R TG V F+LR  + +  ++G 
Sbjct: 191 ---------HMDVNVAGLSNQGNVNLLEKTTMDDLVKERSTGSVTFTLRVSSVNMFKSGS 241

Query: 248 FYTETKHIQSRIICEDLKVHFEGD---TGNGKLNGKSKDC 284
             T T+ I +  ICE LKV F+ +   TG     GK  DC
Sbjct: 242 ISTRTEEIVA--ICEGLKVVFQNNNATTGTMDNRGKPADC 279

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	288
TAIR|locus:2079974	300	AT3G52460 "AT3G52460" [Arabido	0.583	0.56	0.353	2.4e-24
TAIR|locus:2039632	243	AT2G27260 "AT2G27260" [Arabido	0.565	0.670	0.292	7.9e-14

TAIR|locus:2079974 AT3G52460 "AT3G52460" [Arabidopsis thaliana (taxid:3702)]

 Score = 248 (92.4 bits), Expect = 2.4e-24, Sum P(2) = 2.4e-24
 Identities = 64/181 (35%), Positives = 94/181 (51%)

Query:   111 LMFLIARPKFPIFHVETLAVTNFSVANDDFTSAWEINLVVENRNFGANVHFDRIQSFIYF 170
             + +L+ RP+ P+F V   +V+NF+V    F++ W  NL +EN+N     +FDRIQ  +Y 
Sbjct:   126 ITWLVLRPQIPLFSVNNFSVSNFNVTGPVFSAQWTANLTIENQNTKLKGYFDRIQGLVYH 185

Query:   171 NT----DDLLASSHFDHPTKDVTVKANEKGTIDIKLSTADYKQSVPAPGKRVMEEMRNIR 226
                   D+ LA++ F  P   V V+  +   I   L+  D +Q  P     V++EM+  R
Sbjct:   186 QNAVGEDEFLATAFFQ-P---VFVETKKSVVIGETLTAGDKEQ--PKVPSWVVDEMKKER 239

Query:   227 ETGVVPFSLRAFAWSQIETGLFYTETKHIQSRIICEDLKVHFEGDTGNGK-LNGKSKDCV 285
             ETG V FSLR   W   +T  +      +  ++ C  LKV FEG +GNG  L  K   CV
Sbjct:   240 ETGTVTFSLRMAVWVTFKTDGWAARESGL--KVFCGKLKVGFEGISGNGAVLLPKPLPCV 297

Query:   286 V 286
             V
Sbjct:   298 V 298

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2039632 AT2G27260 "AT2G27260" [Arabidopsis thaliana (taxid:3702)]

 Score = 179 (68.1 bits), Expect = 7.9e-14, P = 7.9e-14
 Identities = 53/181 (29%), Positives = 91/181 (50%)

Query:   108 GLVLM--FLIARPKFPIFHVETLAVTNFSVANDDFTSAWEINLVVENRNFGANVHFDRIQ 165
             GL+L   FLI RP+ P  ++ +L+V+NF+V+N+  +  W++ L   N N   ++H++   
Sbjct:    74 GLILFIFFLIVRPQLPDVNLNSLSVSNFNVSNNQVSGKWDLQLQFRNPNSKMSLHYETAL 133

Query:   166 SFIYFNTDDLLAS--SHFDHPTKDVTVKANEKGTIDIKLSTADYKQSVPAPGKRVMEEMR 223
               +Y+N   L  +    FD   KD TV  N   T+ +  +  D +  V + GK      R
Sbjct:   134 CAMYYNRVSLSETRLQPFDQGKKDQTV-VN--ATLSVSGTYVDGRL-VDSIGKE-----R 184

Query:   224 NIRETGVVPFSLRAFAWSQIETGLFYTETKHIQSRIICEDLKVHFEGDTGNGKLNGKSKD 283
             +++  G V F LR  ++     G F    +++   + C+D+ V     +G GK+ G SK 
Sbjct:   185 SVK--GNVEFDLRMISYVTFRYGAF-RRRRYVT--VYCDDVAVGVPVSSGEGKMVGSSKR 239

Query:   284 C 284
             C
Sbjct:   240 C 240


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.135   0.403    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      288       225   0.00077  113 3  11 22  0.40    33
                                                     32  0.41    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  602 (64 KB)
  Total size of DFA:  191 KB (2109 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  19.35u 0.08s 19.43t   Elapsed:  00:00:01
  Total cpu time:  19.35u 0.08s 19.43t   Elapsed:  00:00:01
  Start:  Sat May 11 01:46:39 2013   End:  Sat May 11 01:46:40 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009506 "plasmodesma" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	288
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	0.001
pfam12868	135	pfam12868, DUF3824, Domain of unknwon function (DU	0.001
PRK14086	617	PRK14086, dnaA, chromosomal replication initiation	0.003

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 40.1 bits (94), Expect = 0.001
 Identities = 22/76 (28%), Positives = 29/76 (38%), Gaps = 2/76 (2%)

Query: 11  QSSDEIPEPPPPTRQYFEPQQPAPFPPLPPAMGYPPAMGYPPGYRNGYDQ-QHYQQGPPP 69
           Q + ++P+PP        P + A FP   P    PP    PP       Q Q +   P  
Sbjct: 167 QQAPQLPQPPQQVLPQGMPPRQAAFPQQGP-PEQPPGYPQPPQGHPEQVQPQQFLPAPSQ 225

Query: 70  SPDMYYAPPHCPHQDP 85
           +P     PP  P Q P
Sbjct: 226 APAQPPLPPQLPQQPP 241

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|221818 pfam12868, DUF3824, Domain of unknwon function (DUF3824)

 Score = 37.9 bits (88), Expect = 0.001
 Identities = 27/87 (31%), Positives = 33/87 (37%), Gaps = 11/87 (12%)

Query: 2   DDSRRNKYGQSSDEIPEPPPPT---RQYFE-------PQQPAPFPPLPPAMGYPPAMGYP 51
            D+  + Y +  D  P PP P     +Y+        P    P PP  P  GY PA  YP
Sbjct: 43  HDAYSDSYEEPYDPTPYPPSPPVSDPRYYPNSNYFPPPPGSTPVPPPGPQPGYNPA-DYP 101

Query: 52  PGYRNGYDQQHYQQGPPPSPDMYYAPP 78
           P        Q+Y   P P  D Y   P
Sbjct: 102 PPPGAVPPPQNYPYPPGPGQDPYAPRP 128

This is a repeating domain found in fungal proteins. It is proline-rich, and the function is not known. Length = 135

>gnl|CDD|237605 PRK14086, dnaA, chromosomal replication initiation protein; Provisional

 Score = 38.7 bits (90), Expect = 0.003
 Identities = 26/97 (26%), Positives = 32/97 (32%), Gaps = 16/97 (16%)

Query: 12  SSDEIPEPPPPTRQYFEPQQPAPFPPLPPAMGYPPAMGYPPGY---------RNGY--DQ 60
           S+ E   PPP  R+  EP+ P P        G P A   PPG          R  Y   Q
Sbjct: 91  SAGEPAPPPPHARRTSEPELPRPGRRPYEGYGGPRADDRPPGLPRQDQLPTARPAYPAYQ 150

Query: 61  QHYQQGPPPSPDMYYAPPHCPH-----QDPGPPSSFA 92
           Q  + G  P     Y                 P+S+A
Sbjct: 151 QRPEPGAWPRAADDYGWQQQRLGFPPRAPYASPASYA 187

Length = 617

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	288
PLN03160	219	uncharacterized protein; Provisional	99.97
PF03168	101	LEA_2: Late embryogenesis abundant protein; InterP	99.24
smart00769	100	WHy Water Stress and Hypersensitive response.	97.98
PF07092	238	DUF1356: Protein of unknown function (DUF1356); In	97.88
PF12751	387	Vac7: Vacuolar segregation subunit 7; InterPro: IP	96.5
KOG1924	1102	consensus RhoA GTPase effector DIA/Diaphanous [Sig	96.18
COG5608	161	LEA14-like dessication related protein [Defense me	95.41
KOG1924	1102	consensus RhoA GTPase effector DIA/Diaphanous [Sig	94.53
KOG4849	498	consensus mRNA cleavage factor I subunit/CPSF subu	94.13
KOG2199	462	consensus Signal transducing adaptor protein STAM/	89.91
PF02162	15	XYPPX: XYPPX repeat (two copies); InterPro: IPR006	89.22
COG5178	2365	PRP8 U5 snRNP spliceosome subunit [RNA processing	84.47
PLN03160	219	uncharacterized protein; Provisional	83.9

>PLN03160 uncharacterized protein; Provisional

Probab=99.97  E-value=4.7e-30  Score=230.72  Aligned_cols=178  Identities=15%  Similarity=0.251  Sum_probs=142.3

Q ss_pred             CCCcE-EehhHHHHHHHHHHHHHHheeeEEeecCCCEEEEeeEEEeeeecCC-----CCceeEEEEEEEEEeCCCeeeEE
Q 046217           87 PPSSF-AILTTMMLFVFFTFIVGLVLMFLIARPKFPIFHVETLAVTNFSVAN-----DDFTSAWEINLVVENRNFGANVH  160 (288)
Q Consensus        87 ~r~~~-~l~~~li~lvlllgii~~lIlwLvlrPk~P~f~V~s~svs~fnvs~-----~~L~a~l~~~Lsv~NPN~k~~i~  160 (288)
                      +|+|+ ||+++++++++|++++ +.++|++||||+|+|+|++++|++|++++     ..+|++++++++++|||. ++|+
T Consensus        33 r~~~~~c~~~~~a~~l~l~~v~-~~l~~~vfrPk~P~~~v~~v~l~~~~~~~~~~~~~~~n~tl~~~v~v~NPN~-~~~~  110 (219)
T PLN03160         33 RRNCIKCCGCITATLLILATTI-LVLVFTVFRVKDPVIKMNGVTVTKLELINNTTLRPGTNITLIADVSVKNPNV-ASFK  110 (219)
T ss_pred             cccceEEHHHHHHHHHHHHHHH-HheeeEEEEccCCeEEEEEEEEeeeeeccCCCCceeEEEEEEEEEEEECCCc-eeEE
Confidence            44555 5545554555555555 88999999999999999999999999864     257888899999999999 8999


Q ss_pred             EcceEEEEEECCceeeeEeeecCCCcceEecCCceEEEEEEEEeccccccCCCCChHHHHHHHhhhcCCeEEEEEEEEEE
Q 046217          161 FDRIQSFIYFNTDDLLASSHFDHPTKDVTVKANEKGTIDIKLSTADYKQSVPAPGKRVMEEMRNIRETGVVPFSLRAFAW  240 (288)
Q Consensus       161 Yd~~~~~v~Y~g~~~lg~a~vp~p~~~F~q~~k~tt~v~v~l~~~~~~~~~~~l~~~~~~~l~~d~~~G~V~~~v~v~~r  240 (288)
                      |+++++.++|+|+ .+|++.+| +   |+|++++++.+++++.....+    .+.   ..+|.+|.++|.++|+++++.+
T Consensus       111 Y~~~~~~v~Y~g~-~vG~a~~p-~---g~~~ar~T~~l~~tv~~~~~~----~~~---~~~L~~D~~~G~v~l~~~~~v~  178 (219)
T PLN03160        111 YSNTTTTIYYGGT-VVGEARTP-P---GKAKARRTMRMNVTVDIIPDK----ILS---VPGLLTDISSGLLNMNSYTRIG  178 (219)
T ss_pred             EcCeEEEEEECCE-EEEEEEcC-C---cccCCCCeEEEEEEEEEEece----ecc---chhHHHHhhCCeEEEEEEEEEE
Confidence            9999999999887 89999999 8   999999999999998766542    122   2468889999999999877777


Q ss_pred             EEEEEeEEEEccceeEEEEEeCceEEeeeCCCCCcccccCCCCceec
Q 046217          241 SQIETGLFYTETKHIQSRIICEDLKVHFEGDTGNGKLNGKSKDCVVD  287 (288)
Q Consensus       241 vr~kvG~~~t~~~~~~~~v~C~~l~V~l~~~~~~G~l~~~~~~C~v~  287 (288)
                      .+.++|.+++  +++.++++|+ +.|.+.+    ..  .+..+|+.+
T Consensus       179 gkVkv~~i~k--~~v~~~v~C~-v~V~~~~----~~--i~~~~C~~~  216 (219)
T PLN03160        179 GKVKILKIIK--KHVVVKMNCT-MTVNITS----QA--IQGQKCKRH  216 (219)
T ss_pred             EEEEEEEEEE--EEEEEEEEeE-EEEECCC----CE--EeccEeccc
Confidence            7777777766  8999999999 8886622    22  245569865

>PF03168 LEA_2: Late embryogenesis abundant protein; InterPro: IPR004864 Different types of LEA proteins are expressed at different stages of late embryogenesis in higher plant seed embryos and under conditions of dehydration stress [, ]

Probab=99.24  E-value=4.9e-11  Score=92.72  Aligned_cols=98  Identities=20%  Similarity=0.348  Sum_probs=70.6

Q ss_pred             EEEEEeCCCeeeEEEcceEEEEEECCceeee-EeeecCCCcceEecCCceEEEEEEEEeccccccCCCCChHHHHHHHhh
Q 046217          147 NLVVENRNFGANVHFDRIQSFIYFNTDDLLA-SSHFDHPTKDVTVKANEKGTIDIKLSTADYKQSVPAPGKRVMEEMRNI  225 (288)
Q Consensus       147 ~Lsv~NPN~k~~i~Yd~~~~~v~Y~g~~~lg-~a~vp~p~~~F~q~~k~tt~v~v~l~~~~~~~~~~~l~~~~~~~l~~d  225 (288)
                      +|+++|||. ++++|+++++.++|+|. .+| ....+ +   |.|++++++.+.+.+..+..     .+    .+.+.++
T Consensus         1 ~l~v~NPN~-~~i~~~~~~~~v~~~g~-~v~~~~~~~-~---~~i~~~~~~~v~~~v~~~~~-----~l----~~~l~~~   65 (101)
T PF03168_consen    1 TLSVRNPNS-FGIRYDSIEYDVYYNGQ-RVGTGGSLP-P---FTIPARSSTTVPVPVSVDYS-----DL----PRLLKDL   65 (101)
T ss_dssp             EEEEEESSS-S-EEEEEEEEEEEESSS-EEEEEEECE-----EEESSSCEEEEEEEEEEEHH-----HH----HHHHHHH
T ss_pred             CEEEECCCc-eeEEEeCEEEEEEECCE-EEECccccC-C---eEECCCCcEEEEEEEEEcHH-----HH----HHHHHhh
Confidence            589999999 99999999999999887 788 55566 7   99999999999998887654     22    4556666


Q ss_pred             hcCCeEEEEEEEEEEEEEEE-eEEEEccceeEEEEEeC
Q 046217          226 RETGVVPFSLRAFAWSQIET-GLFYTETKHIQSRIICE  262 (288)
Q Consensus       226 ~~~G~V~~~v~v~~rvr~kv-G~~~t~~~~~~~~v~C~  262 (288)
                      . +|...+++.++++.++++ +.+..  ++..+.++|+
T Consensus        66 ~-~~~~~~~v~~~~~g~~~v~~~~~~--~~~~v~~~~~  100 (101)
T PF03168_consen   66 L-AGRVPFDVTYRIRGTFKVLGTPIF--GSVRVPVSCE  100 (101)
T ss_dssp             H-HTTSCEEEEEEEEEEEE-EE-TTT--SCEEEEEEEE
T ss_pred             h-ccccceEEEEEEEEEEEEccccee--eeEEEeEEeE
Confidence            6 556666666777777774 43333  4555555554

The function of these proteins is unknown. ; PDB: 3BUT_A 1XO8_A 1YYC_A.

>smart00769 WHy Water Stress and Hypersensitive response

Probab=97.98  E-value=0.00011  Score=57.97  Aligned_cols=62  Identities=16%  Similarity=0.225  Sum_probs=56.4

Q ss_pred             CceeEEEEEEEEEeCCCeeeEEEcceEEEEEECCceeeeEeeecCCCcceEecCCceEEEEEEEEec
Q 046217          139 DFTSAWEINLVVENRNFGANVHFDRIQSFIYFNTDDLLASSHFDHPTKDVTVKANEKGTIDIKLSTA  205 (288)
Q Consensus       139 ~L~a~l~~~Lsv~NPN~k~~i~Yd~~~~~v~Y~g~~~lg~a~vp~p~~~F~q~~k~tt~v~v~l~~~  205 (288)
                      .++.++.+.|.+.|||. +.+.++.++..++++|. .+|++..+.+   +..++++++.+.+.+..+
T Consensus        12 ~~~~~~~l~l~v~NPN~-~~l~~~~~~y~l~~~g~-~v~~g~~~~~---~~ipa~~~~~v~v~~~~~   73 (100)
T smart00769       12 GLEIEIVLKVKVQNPNP-FPIPVNGLSYDLYLNGV-ELGSGEIPDS---GTLPGNGRTVLDVPVTVN   73 (100)
T ss_pred             ceEEEEEEEEEEECCCC-CccccccEEEEEEECCE-EEEEEEcCCC---cEECCCCcEEEEEEEEee
Confidence            56789999999999999 99999999999999886 8999998646   999999999999998884

>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length

Probab=97.88  E-value=0.0016  Score=59.36  Aligned_cols=83  Identities=10%  Similarity=0.127  Sum_probs=60.9

Q ss_pred             ecCCCEEEEeeEEEee--eecCCCCceeEEEEEEEEEeCCCeeeEEEcceEEEEEECCceeeeEeeecCCCcceEecCCc
Q 046217          117 RPKFPIFHVETLAVTN--FSVANDDFTSAWEINLVVENRNFGANVHFDRIQSFIYFNTDDLLASSHFDHPTKDVTVKANE  194 (288)
Q Consensus       117 rPk~P~f~V~s~svs~--fnvs~~~L~a~l~~~Lsv~NPN~k~~i~Yd~~~~~v~Y~g~~~lg~a~vp~p~~~F~q~~k~  194 (288)
                      -||.-.++-.++....  |+-.++.+..+++-.|.++|+|. ..+...++.+.+.|... .+|.+... .  ....++++
T Consensus        97 fPRsV~v~~~gv~s~~V~f~~~~~~v~l~itn~lNIsN~NF-y~V~Vt~~s~qv~~~~~-VVG~~~~~-~--~~~I~Prs  171 (238)
T PF07092_consen   97 FPRSVTVSPVGVKSVTVSFNPDKSTVQLNITNTLNISNPNF-YPVTVTNLSIQVLYMKT-VVGKGKNS-N--ITVIGPRS  171 (238)
T ss_pred             eCcEEEEecCcEEEEEEEEeCCCCEEEEEEEEEEEccCCCE-EEEEEEeEEEEEEEEEe-EEeeeEec-c--eEEecccC
Confidence            4776444433333222  33344568899999999999999 99999999999999765 89988776 3  26788888


Q ss_pred             eEEEEEEEEe
Q 046217          195 KGTIDIKLST  204 (288)
Q Consensus       195 tt~v~v~l~~  204 (288)
                      .+.+..++..
T Consensus       172 ~~q~~~tV~t  181 (238)
T PF07092_consen  172 SKQVNYTVKT  181 (238)
T ss_pred             CceEEEEeeE
Confidence            8877776665

The function of this family is unknown.

>PF12751 Vac7: Vacuolar segregation subunit 7; InterPro: IPR024260 Vac7 is localised at the vacuole membrane, a location which is consistent with its involvement in vacuole morphology and inheritance []

Probab=96.50  E-value=0.0071  Score=58.65  Aligned_cols=40  Identities=13%  Similarity=0.248  Sum_probs=32.6

Q ss_pred             CceeEEEEEEEEEeCCCeeeEEEcceEEEEEECCceeeeEee
Q 046217          139 DFTSAWEINLVVENRNFGANVHFDRIQSFIYFNTDDLLASSH  180 (288)
Q Consensus       139 ~L~a~l~~~Lsv~NPN~k~~i~Yd~~~~~v~Y~g~~~lg~a~  180 (288)
                      .--.-|++++.+.|||. +.|..++.++.|+-+.. .+++-.
T Consensus       345 ~qELmfdl~V~A~NPn~-~~V~I~d~dldIFAKS~-yvg~D~  384 (387)
T PF12751_consen  345 EQELMFDLTVEAFNPNW-FTVTIDDMDLDIFAKSR-YVGTDS  384 (387)
T ss_pred             cceEEEeeEEEEECCCe-EEEEeccceeeeEecCC-ccCccc
Confidence            34567889999999999 99999999999998775 555543

Vac7 has been shown to function as an upstream regulator of the Fab1 lipid kinase pathway []. The Fab1 lipid pathway is important for correct regulation of membrane trafficking events.

>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]

Probab=96.18  E-value=0.013  Score=61.07  Aligned_cols=13  Identities=38%  Similarity=0.672  Sum_probs=6.6

Q ss_pred             CCCCCCCCCCCCC
Q 046217           39 PPAMGYPPAMGYP   51 (288)
Q Consensus        39 ~~~~~~~~~~~~~   51 (288)
                      ||+++-|+-+|-|
T Consensus       558 PPPpplPg~aG~P  570 (1102)
T KOG1924|consen  558 PPPPPLPGIAGGP  570 (1102)
T ss_pred             ccCCCCCcccCCC
Confidence            4445555555544

>COG5608 LEA14-like dessication related protein [Defense mechanisms]

Probab=95.41  E-value=1.3  Score=38.02  Aligned_cols=80  Identities=18%  Similarity=0.140  Sum_probs=60.7

Q ss_pred             CCCEEEEeeEEEeeeecCCCCceeEEEEEEEEEeCCCeeeEEEcceEEEEEECCceeeeEeeecCCCcceEecCCceEEE
Q 046217          119 KFPIFHVETLAVTNFSVANDDFTSAWEINLVVENRNFGANVHFDRIQSFIYFNTDDLLASSHFDHPTKDVTVKANEKGTI  198 (288)
Q Consensus       119 k~P~f~V~s~svs~fnvs~~~L~a~l~~~Lsv~NPN~k~~i~Yd~~~~~v~Y~g~~~lg~a~vp~p~~~F~q~~k~tt~v  198 (288)
                      +.|.+.--.+..-...    .....+-.++.++|||. +.|-...++..++-++ ..+|.+....+   +..++++..++
T Consensus        31 ~~p~ve~~ka~wGkvt----~s~~EiV~t~KiyNPN~-fPipVtgl~y~vymN~-Iki~eG~~~k~---~~v~p~S~~tv  101 (161)
T COG5608          31 KKPGVESMKAKWGKVT----NSETEIVGTLKIYNPNP-FPIPVTGLQYAVYMND-IKIGEGEILKG---TTVPPNSRETV  101 (161)
T ss_pred             CCCCceEEEEEEEEEe----ccceEEEEEEEecCCCC-cceeeeceEEEEEEcc-eEeeccccccc---eEECCCCeEEE
Confidence            3454444444443332    23467889999999999 9999999999998866 58999987645   99999999999


Q ss_pred             EEEEEeccc
Q 046217          199 DIKLSTADY  207 (288)
Q Consensus       199 ~v~l~~~~~  207 (288)
                      ++.+..+..
T Consensus       102 dv~l~~d~~  110 (161)
T COG5608         102 DVPLRLDNS  110 (161)
T ss_pred             EEEEEEehH
Confidence            999887654

>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]

Probab=94.53  E-value=0.07  Score=55.97  Aligned_cols=17  Identities=47%  Similarity=0.731  Sum_probs=7.2

Q ss_pred             CCCCCCCCCCCCCCCCC
Q 046217           38 LPPAMGYPPAMGYPPGY   54 (288)
Q Consensus        38 ~~~~~~~~~~~~~~~~~   54 (288)
                      .|+-+|-||.-+.|||.
T Consensus       563 lPg~aG~PPpPppppg~  579 (1102)
T KOG1924|consen  563 LPGIAGGPPPPPPPPGG  579 (1102)
T ss_pred             CCcccCCCCccCCCCCC
Confidence            33344444444444443

>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]

Probab=94.13  E-value=0.19  Score=48.38  Aligned_cols=39  Identities=44%  Similarity=0.686  Sum_probs=23.6

Q ss_pred             CCCCCCCCCC---------CCCCCCCCCCCCccc--cCCCCCC-------CCCccccCC
Q 046217           38 LPPAMGYPPA---------MGYPPGYRNGYDQQH--YQQGPPP-------SPDMYYAPP   78 (288)
Q Consensus        38 ~~~~~~~~~~---------~~~~~~~~~~~~~~~--~~~~p~~-------~~~~y~~~~   78 (288)
                      .+|+||.||-         ||.|||-++  +.-|  .++.|||       +|+|||.-.
T Consensus       283 p~pp~~~ppRP~m~l~phl~gppPga~p--Paph~NpaffpPP~~~s~GppP~~~~~~~  339 (498)
T KOG4849|consen  283 PQPPMGQPPRPMMQLSPHLMGPPPGAGP--PAPHNNPAFFPPPQLGSMGPPPQMNTAMR  339 (498)
T ss_pred             CCCCCCCCCCcccccCcccCCCCCCCCC--CCcccCcccCCCCCcCcCCCCCCCccCCC
Confidence            4666677766         677777653  2223  4555555       569999654

>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]

Probab=89.91  E-value=0.67  Score=45.44  Aligned_cols=18  Identities=22%  Similarity=0.414  Sum_probs=12.8

Q ss_pred             CCCCCCCCCCCCCCCCCC
Q 046217           34 PFPPLPPAMGYPPAMGYP   51 (288)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~   51 (288)
                      ||+.+|-.++|.|+.+|+
T Consensus       419 Pp~~~~~~p~~~~q~~Y~  436 (462)
T KOG2199|consen  419 PPNSNPATPQQQPQLSYS  436 (462)
T ss_pred             CCccCCCCCCCCcccccc
Confidence            555566667788888887

>PF02162 XYPPX: XYPPX repeat (two copies); InterPro: IPR006031 This repeat is found in a wide variety of proteins and generally consists of the motif XYPPX where X can be any amino acid

Probab=89.22  E-value=0.28  Score=25.78  Aligned_cols=9  Identities=33%  Similarity=0.316  Sum_probs=3.4

Q ss_pred             CCCCCCCCC
Q 046217           31 QPAPFPPLP   39 (288)
Q Consensus        31 ~~~~~~~~~   39 (288)
                      |++|||.+|
T Consensus         5 qG~pPQ~~P   13 (15)
T PF02162_consen    5 QGYPPQGYP   13 (15)
T ss_pred             cCCCCCCCC
Confidence            333333333

The family includes annexin VII ANX7_DICDI, the carboxy tail of certain rhodopsins OPSD_LOLSU. This family also includes plaque matrix proteins, however this motif is embedded in a ten residue repeat in FP1_MYTED. The molecular function of this repeat is unknown. It is also not clear is all the members of this family share a common evolutionary ancestor due to its short length and biased amino acid composition.

>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]

Probab=84.47  E-value=0.7  Score=50.74  Aligned_cols=21  Identities=43%  Similarity=0.872  Sum_probs=15.6

Q ss_pred             CCCCCCCCCCCCCCCCCCCCC
Q 046217           15 EIPEPPPPTRQYFEPQQPAPF   35 (288)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~   35 (288)
                      +-|.||||+|+|-||+||+||
T Consensus         7 g~ppppppppg~epps~pppP   27 (2365)
T COG5178           7 GNPPPPPPPPGFEPPSQPPPP   27 (2365)
T ss_pred             CCCcccccCCCCCCCCCCCCc
Confidence            347888888888888875543

>PLN03160 uncharacterized protein; Provisional

Probab=83.90  E-value=4.1  Score=36.81  Aligned_cols=81  Identities=10%  Similarity=0.093  Sum_probs=48.8

Q ss_pred             CCCCCCCcEEehhHHHHHHHHHHHHHHheeeEEeecC--CCEEEEeeEEEee-------eecCC----CCceeEEEEEEE
Q 046217           83 QDPGPPSSFAILTTMMLFVFFTFIVGLVLMFLIARPK--FPIFHVETLAVTN-------FSVAN----DDFTSAWEINLV  149 (288)
Q Consensus        83 ~~~~~r~~~~l~~~li~lvlllgii~~lIlwLvlrPk--~P~f~V~s~svs~-------fnvs~----~~L~a~l~~~Ls  149 (288)
                      ++.+-++|.|+|+++++++++++++ +++++-.=.|+  .-.++|+++.++.       +|++-    ..-|-|. +.+.
T Consensus        33 r~~~~~c~~~~~a~~l~l~~v~~~l-~~~vfrPk~P~~~v~~v~l~~~~~~~~~~~~~~~n~tl~~~v~v~NPN~-~~~~  110 (219)
T PLN03160         33 RRNCIKCCGCITATLLILATTILVL-VFTVFRVKDPVIKMNGVTVTKLELINNTTLRPGTNITLIADVSVKNPNV-ASFK  110 (219)
T ss_pred             cccceEEHHHHHHHHHHHHHHHHhe-eeEEEEccCCeEEEEEEEEeeeeeccCCCCceeEEEEEEEEEEEECCCc-eeEE
Confidence            3556778888888888877777777 66666656664  4556666666532       23221    0123444 4444


Q ss_pred             EEeCCCeeeEEEcceEEE
Q 046217          150 VENRNFGANVHFDRIQSF  167 (288)
Q Consensus       150 v~NPN~k~~i~Yd~~~~~  167 (288)
                      ..  |..+.++|+...+.
T Consensus       111 Y~--~~~~~v~Y~g~~vG  126 (219)
T PLN03160        111 YS--NTTTTIYYGGTVVG  126 (219)
T ss_pred             Ec--CeEEEEEECCEEEE
Confidence            43  45578888776553

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	288
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	1e-06
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	1e-05
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	1e-04
1dx0_A	219	Prion protein; brain, repeat; NMR {Bos taurus} SCO	1e-04
1dx0_A	219	Prion protein; brain, repeat; NMR {Bos taurus} SCO	4e-04

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 48.7 bits (115), Expect = 1e-06
 Identities = 16/95 (16%), Positives = 28/95 (29%), Gaps = 3/95 (3%)

Query: 1  MDDSRRNKYGQSSDEIPEPPPPTRQ---YFEPQQPAPFPPLPPAMGYPPAMGYPPGYRNG 57
          M   ++  Y Q+  +  +   P +Q   +  PQ PA        MG PP    P   +  
Sbjct: 1  MSHHKKRVYPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQ 60

Query: 58 YDQQHYQQGPPPSPDMYYAPPHCPHQDPGPPSSFA 92
          +     +Q          +       +       A
Sbjct: 61 FLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNA 95

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 45.6 bits (107), Expect = 1e-05
 Identities = 14/82 (17%), Positives = 19/82 (23%)

Query: 9   YGQSSDEIPEPPPPTRQYFEPQQPAPFPPLPPAMGYPPAMGYPPGYRNGYDQQHYQQGPP 68
            GQ     P      +Q  +         L       P     P           QQ  P
Sbjct: 56  MGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQP 115

Query: 69  PSPDMYYAPPHCPHQDPGPPSS 90
            +   Y  P     Q+  P + 
Sbjct: 116 MAAPAYGQPSAAMGQNMRPMNQ 137

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 42.5 bits (99), Expect = 1e-04
 Identities = 10/82 (12%), Positives = 19/82 (23%), Gaps = 2/82 (2%)

Query: 17  PEPPPPTRQYFEPQQPAPFPPLPPAMGYPPAMGYPPGYRNGYDQQHYQQGPPPSPDMYYA 76
           P+   P+    +   PA             +M     +              P   +   
Sbjct: 49  PQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLH--NVPLVDPNAYMQPQVPVQMG 106

Query: 77  PPHCPHQDPGPPSSFAILTTMM 98
            P    Q P    ++   +  M
Sbjct: 107 TPLQQQQQPMAAPAYGQPSAAM 128

>1dx0_A Prion protein; brain, repeat; NMR {Bos taurus} SCOP: d.6.1.1 PDB: 1dx1_A 1qlx_A 1qlz_A Length = 219

 Score = 41.0 bits (95), Expect = 1e-04
 Identities = 14/77 (18%), Positives = 20/77 (25%), Gaps = 2/77 (2%)

Query: 17 PEPPPPTRQYFEPQQPAPFPPLPPAMGYPPAMGYP--PGYRNGYDQQHYQQGPPPSPDMY 74
           + P P   +       P    P    YPP  G      +  G+ Q H      P    +
Sbjct: 3  KKRPKPGGGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGGW 62

Query: 75 YAPPHCPHQDPGPPSSF 91
            P       P     +
Sbjct: 63 GQPHGGGWGQPHGGGGW 79

>1dx0_A Prion protein; brain, repeat; NMR {Bos taurus} SCOP: d.6.1.1 PDB: 1dx1_A 1qlx_A 1qlz_A Length = 219

 Score = 39.8 bits (92), Expect = 4e-04
 Identities = 13/87 (14%), Positives = 24/87 (27%), Gaps = 4/87 (4%)

Query: 9  YGQSSDEIPEPPPPTRQYFEPQQPAPF-PPLPPAMGYPPAMGYPPGYRNGYDQQH---YQ 64
          +       P    P    + PQ    +  P     G P   G+   +  G+ Q H   + 
Sbjct: 12 WNTGGSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHGGGWG 71

Query: 65 QGPPPSPDMYYAPPHCPHQDPGPPSSF 91
          Q                ++   P ++ 
Sbjct: 72 QPHGGGGWGQGGTHGQWNKPSKPKTNM 98

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	288
1yyc_A	174	LEA protein, putative late embryogenesis abundant	97.96
1xo8_A	151	AT1G01470; structural genomics, protein structure	97.81
3but_A	136	Uncharacterized protein AF_0446; lipid binding pro	97.27

>1yyc_A LEA protein, putative late embryogenesis abundant protein; structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana}

Probab=97.96  E-value=5.6e-05  Score=64.82  Aligned_cols=78  Identities=14%  Similarity=0.194  Sum_probs=70.6

Q ss_pred             CCCEEEEeeEEEeeeecCCCCceeEEEEEEEEEeCCCeeeEEEcceEEEEEECCceeeeEeeecCCCcceEecCCceEEE
Q 046217          119 KFPIFHVETLAVTNFSVANDDFTSAWEINLVVENRNFGANVHFDRIQSFIYFNTDDLLASSHFDHPTKDVTVKANEKGTI  198 (288)
Q Consensus       119 k~P~f~V~s~svs~fnvs~~~L~a~l~~~Lsv~NPN~k~~i~Yd~~~~~v~Y~g~~~lg~a~vp~p~~~F~q~~k~tt~v  198 (288)
                      +.|+++|.++++.+++..    ..++.+.|+++|||. +.|.++.++..+.-+|. .++++..+++   +..++++++.+
T Consensus        43 ~~PeV~v~~v~~~~~~l~----~~~~~l~LrV~NPN~-~pLpi~gi~Y~L~vnG~-~lasG~s~~~---~tIpa~g~~~v  113 (174)
T 1yyc_A           43 PTPEATVDDVDFKGVTRD----GVDYHAKVSVKNPYS-QSIPICQISYILKSATR-TIASGTIPDP---GSLVGSGTTVL  113 (174)
T ss_dssp             CCCEEEEEEEEEEEECSS----SEEEEEEEEEEECSS-SCCBCCSEEEEEEESSS-CEEEEEESCC---CBCCSSEEEEE
T ss_pred             CCCEEEEEEeEEeccccc----eEEEEEEEEEECCCC-CCccccceEEEEEECCE-EEEEEecCCC---ceECCCCcEEE
Confidence            789999999999888654    488999999999999 99999999999999776 8999999867   99999999999


Q ss_pred             EEEEEec
Q 046217          199 DIKLSTA  205 (288)
Q Consensus       199 ~v~l~~~  205 (288)
                      .+.++..
T Consensus       114 ~Vpv~v~  120 (174)
T 1yyc_A          114 DVPVKVA  120 (174)
T ss_dssp             EEEEEES
T ss_pred             EEEEEEE
Confidence            9998875

>1xo8_A AT1G01470; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, unknown function; NMR {Arabidopsis thaliana} SCOP: b.1.25.1

Probab=97.81  E-value=5.2e-05  Score=63.44  Aligned_cols=78  Identities=13%  Similarity=0.115  Sum_probs=68.2

Q ss_pred             CCCEEEEeeEEEeeeecCCCCceeEEEEEEEEEeCCCeeeEEEcceEEEEEECCceeeeEeeecCCCcceEecCCceEEE
Q 046217          119 KFPIFHVETLAVTNFSVANDDFTSAWEINLVVENRNFGANVHFDRIQSFIYFNTDDLLASSHFDHPTKDVTVKANEKGTI  198 (288)
Q Consensus       119 k~P~f~V~s~svs~fnvs~~~L~a~l~~~Lsv~NPN~k~~i~Yd~~~~~v~Y~g~~~lg~a~vp~p~~~F~q~~k~tt~v  198 (288)
                      +.|+++|.++++.+++.    ...++.+.|+++|||. ..|.++.++..+.-+|. .++++..+++   +..++++++.+
T Consensus        20 ~~P~v~v~~v~~~~~~~----~~~~~~~~l~V~NPN~-~~lpi~gi~y~l~vng~-~lasG~~~~~---~~ipa~g~~~v   90 (151)
T 1xo8_A           20 PKPEGSVTDVDLKDVNR----DSVEYLAKVSVTNPYS-HSIPICEISFTFHSAGR-EIGKGKIPDP---GSLKAKDMTAL   90 (151)
T ss_dssp             CSCCCBCSEEEECCCTT----TEECEEEEEEEECSSS-SCCCCEEEEEEEESSSS-CEEEEEEEEC---CCCSSSSEEEE
T ss_pred             CCCEEEEEEeEEeccCc----ceeEEEEEEEEECCCC-CCcccccEEEEEEECCE-EEEEEecCCC---cEECCCCcEEE
Confidence            67999999999887743    4678999999999999 99999999999988776 8999999867   99999999999


Q ss_pred             EEEEEec
Q 046217          199 DIKLSTA  205 (288)
Q Consensus       199 ~v~l~~~  205 (288)
                      .+.++..
T Consensus        91 ~vpv~v~   97 (151)
T 1xo8_A           91 DIPVVVP   97 (151)
T ss_dssp             EECCCEE
T ss_pred             EEEEEEE
Confidence            9887765

>3but_A Uncharacterized protein AF_0446; lipid binding protein, beta barrel, protein structure initia PSI-2; 1.91A {Archaeoglobus fulgidus dsm 4304}

Probab=97.27  E-value=0.0034  Score=51.56  Aligned_cols=63  Identities=19%  Similarity=0.133  Sum_probs=55.2

Q ss_pred             ceeEEEEEEEEEeCCCeeeEEEcceEEEEEECCceeeeEeeecCCCcceEecCCceEEEEEEEEeccc
Q 046217          140 FTSAWEINLVVENRNFGANVHFDRIQSFIYFNTDDLLASSHFDHPTKDVTVKANEKGTIDIKLSTADY  207 (288)
Q Consensus       140 L~a~l~~~Lsv~NPN~k~~i~Yd~~~~~v~Y~g~~~lg~a~vp~p~~~F~q~~k~tt~v~v~l~~~~~  207 (288)
                      -...+.+.|.+.|||. +.+.++.++..|...|. .+|++.....   +..++.+++.+.+.+..+..
T Consensus        16 ~~t~~~~~l~V~NPN~-~~l~i~gl~y~v~lng~-~la~G~s~~~---~~I~~~g~~~v~v~~~i~~~   78 (136)
T 3but_A           16 SQTEIVALAKVRNEDV-VPIVVSGYHYTIEMNGV-KVADGYENSP---VTVKPASATTLKFSLRLNNS   78 (136)
T ss_dssp             SEEEEEEEEEEECCSS-SCEEEEEEEEEEEETTE-EEEEEEECCC---EEECTTCEEEEEEEEEEEHH
T ss_pred             cEEEEEEEEEEeCCCC-cceeeeceEEEEEECCE-EEEeeeecCc---eEECCCCcEEEEEEEEEchH
Confidence            4678999999999998 99999999999999775 8999886635   99999999999999888765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	288
d1xo8a_	151	Putative dessication related protein LEA14 {Thale	97.92

>d1xo8a_ b.1.25.1 (A:) Putative dessication related protein LEA14 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: LEA14-like
family: LEA14-like
domain: Putative dessication related protein LEA14
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.92  E-value=1.1e-05  Score=65.62  Aligned_cols=80  Identities=13%  Similarity=0.117  Sum_probs=69.8

Q ss_pred             ecCCCEEEEeeEEEeeeecCCCCceeEEEEEEEEEeCCCeeeEEEcceEEEEEECCceeeeEeeecCCCcceEecCCceE
Q 046217          117 RPKFPIFHVETLAVTNFSVANDDFTSAWEINLVVENRNFGANVHFDRIQSFIYFNTDDLLASSHFDHPTKDVTVKANEKG  196 (288)
Q Consensus       117 rPk~P~f~V~s~svs~fnvs~~~L~a~l~~~Lsv~NPN~k~~i~Yd~~~~~v~Y~g~~~lg~a~vp~p~~~F~q~~k~tt  196 (288)
                      +=+.|++++.++++.+++..    .+++.+.|+++|||. +.+..+.++..++.+|. .++++..+++   +..++++++
T Consensus        18 ~~~kPev~l~~v~i~~v~~~----~~~l~~~l~V~NPN~-~~l~i~~l~y~l~~~g~-~ia~G~~~~~---~~ipa~~~~   88 (151)
T d1xo8a_          18 AIPKPEGSVTDVDLKDVNRD----SVEYLAKVSVTNPYS-HSIPICEISFTFHSAGR-EIGKGKIPDP---GSLKAKDMT   88 (151)
T ss_dssp             CCCSCCCBCSEEEECCCTTT----EECEEEEEEEECSSS-SCCCCEEEEEEEESSSS-CEEEEEEEEC---CCCSSSSEE
T ss_pred             CCCCCeEEEEEEEeeecccc----eEEEEEEEEEECCCC-CceeeeeEEEEEEECCE-EEEeEecCCC---cEEcCCCcE
Confidence            45679999999999888543    688999999999999 99999999999999776 7999988767   999999999


Q ss_pred             EEEEEEEec
Q 046217          197 TIDIKLSTA  205 (288)
Q Consensus       197 ~v~v~l~~~  205 (288)
                      .+.+.++..
T Consensus        89 ~v~vpv~v~   97 (151)
T d1xo8a_          89 ALDIPVVVP   97 (151)
T ss_dssp             EEEECCCEE
T ss_pred             EEEEEEEEE
Confidence            999887764