Citrus Sinensis ID: 046225


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70---
MKVRVYTASEVESELEVAKREYLQAAVGISSEKLAIPKLLDWYLLDFAKDFESLLDWICLQSVVVTVLYSARE
cEEEEEcHHHHHHHHHHHHHHHHHHHHcccccEEEHHHHHHHHHHHHHccHHHHHHHHHccHHHHHHHHHHcc
cEEEEEcHHHHHHHHHHHHHHHHHHHHccccccEEHHHHHHHHHHHHHHcHHHHHHHHHHcccEEEEEEEccc
MKVRVYTASEVESELEVAKREYLQAAvgisseklaiPKLLDWYLLDFAKDFESLLDWICLQSVVVTVLYSARE
mkvrvytaseveseleVAKREYLQAavgisseklaIPKLLDWYLLDFAKDFESLLDWICLQSVVVTVLYSARE
MKVRVYTASEVESELEVAKREYLQAAVGISSEKLAIPKLLDWYLLDFAKDFESLLDWICLQSVVVTVLYSARE
***************EVAKREYLQAAVGISSEKLAIPKLLDWYLLDFAKDFESLLDWICLQSVVVTVLY****
*KVRVYTASEVESELEVAKREYLQAAVGISSEKLAIPKLLDWYLLDFAKDFESLLDWICLQSVVVTVLYSAR*
***************EVAKREYLQAAVGISSEKLAIPKLLDWYLLDFAKDFESLLDWICLQSVVVTVLYSARE
MKVRVYTASEVESELEVAKREYLQAAVGISSEKLAIPKLLDWYLLDFAKDFESLLDWICLQSVVVTVLYSAR*
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHii
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MKVRVYTASEVESELEVAKREYLQAAVGISSEKLAIPKLLDWYLLDFAKDFESLLDWICLQSVVVTVLYSARE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query73
359492067 573 PREDICTED: uncharacterized protein LOC10 0.808 0.102 0.9 4e-23
255538406 533 transcription factor, putative [Ricinus 0.808 0.110 0.864 2e-22
388514917 189 unknown [Lotus japonicus] 0.808 0.312 0.847 2e-22
356552174 522 PREDICTED: uncharacterized protein LOC10 0.808 0.113 0.847 2e-22
356562303 525 PREDICTED: uncharacterized protein LOC10 0.808 0.112 0.847 3e-22
449446973 547 PREDICTED: uncharacterized protein LOC10 0.808 0.107 0.830 4e-22
356509716 609 PREDICTED: uncharacterized protein LOC10 0.808 0.096 0.847 7e-22
224137374 445 predicted protein [Populus trichocarpa] 0.808 0.132 0.813 8e-22
357437941 547 hypothetical protein MTR_1g021040 [Medic 0.808 0.107 0.830 1e-21
357465441 540 hypothetical protein MTR_3g101340 [Medic 0.808 0.109 0.830 1e-21
>gi|359492067|ref|XP_002282310.2| PREDICTED: uncharacterized protein LOC100266128 [Vitis vinifera] gi|302142367|emb|CBI19570.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 54/60 (90%), Positives = 57/60 (95%), Gaps = 1/60 (1%)

Query: 3   VRVYTASEVESELEVAKREYLQAAVGISSEKL-AIPKLLDWYLLDFAKDFESLLDWICLQ 61
           VRVYTAS+VE+ELEVAKREYLQAAVGIS+ KL AIPKLLDWYLLDFAKDFES LDWICLQ
Sbjct: 473 VRVYTASQVENELEVAKREYLQAAVGISTTKLFAIPKLLDWYLLDFAKDFESFLDWICLQ 532




Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255538406|ref|XP_002510268.1| transcription factor, putative [Ricinus communis] gi|223550969|gb|EEF52455.1| transcription factor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|388514917|gb|AFK45520.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|356552174|ref|XP_003544444.1| PREDICTED: uncharacterized protein LOC100817917 [Glycine max] Back     alignment and taxonomy information
>gi|356562303|ref|XP_003549411.1| PREDICTED: uncharacterized protein LOC100801978 [Glycine max] Back     alignment and taxonomy information
>gi|449446973|ref|XP_004141244.1| PREDICTED: uncharacterized protein LOC101211254 [Cucumis sativus] Back     alignment and taxonomy information
>gi|356509716|ref|XP_003523592.1| PREDICTED: uncharacterized protein LOC100807554 [Glycine max] Back     alignment and taxonomy information
>gi|224137374|ref|XP_002327110.1| predicted protein [Populus trichocarpa] gi|222835425|gb|EEE73860.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357437941|ref|XP_003589246.1| hypothetical protein MTR_1g021040 [Medicago truncatula] gi|355478294|gb|AES59497.1| hypothetical protein MTR_1g021040 [Medicago truncatula] Back     alignment and taxonomy information
>gi|357465441|ref|XP_003603005.1| hypothetical protein MTR_3g101340 [Medicago truncatula] gi|355492053|gb|AES73256.1| hypothetical protein MTR_3g101340 [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query73
TAIR|locus:2115164610 AT4G37080 "AT4G37080" [Arabido 0.808 0.096 0.766 1.8e-19
TAIR|locus:2165487540 AT5G42690 [Arabidopsis thalian 0.808 0.109 0.779 1.3e-18
TAIR|locus:2043235498 AT2G39690 "AT2G39690" [Arabido 0.808 0.118 0.55 7.3e-12
TAIR|locus:2101242505 AT3G12540 [Arabidopsis thalian 0.808 0.116 0.5 1.4e-09
TAIR|locus:2089220582 AT3G13000 [Arabidopsis thalian 0.753 0.094 0.421 3.5e-05
TAIR|locus:2171499618 AT5G47380 "AT5G47380" [Arabido 0.767 0.090 0.333 0.0001
TAIR|locus:2015666529 AT1G16750 "AT1G16750" [Arabido 0.753 0.103 0.403 0.0001
TAIR|locus:2011661527 AT1G76620 "AT1G76620" [Arabido 0.739 0.102 0.345 0.00059
TAIR|locus:2049008707 AT2G23700 "AT2G23700" [Arabido 0.794 0.082 0.344 0.00067
TAIR|locus:2115164 AT4G37080 "AT4G37080" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 241 (89.9 bits), Expect = 1.8e-19, P = 1.8e-19
 Identities = 46/60 (76%), Positives = 53/60 (88%)

Query:     3 VRVYTASEVESELEVAKREYLQAAVGIS-SEKLAIPKLLDWYLLDFAKDFESLLDWICLQ 61
             VRVYTA+ VE ELE AKR+YLQA+VGIS + KL +PK+LDWYLLDFAKD ESLLDW+CLQ
Sbjct:   511 VRVYTAANVEEELEAAKRDYLQASVGISKNNKLMLPKVLDWYLLDFAKDLESLLDWVCLQ 570




GO:0003674 "molecular_function" evidence=ND
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
TAIR|locus:2165487 AT5G42690 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2043235 AT2G39690 "AT2G39690" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2101242 AT3G12540 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2089220 AT3G13000 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2171499 AT5G47380 "AT5G47380" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2015666 AT1G16750 "AT1G16750" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2011661 AT1G76620 "AT1G76620" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2049008 AT2G23700 "AT2G23700" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Fail to connect to STRING server


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query73
pfam04784112 pfam04784, DUF547, Protein of unknown function, DU 0.003
>gnl|CDD|218263 pfam04784, DUF547, Protein of unknown function, DUF547 Back     alignment and domain information
 Score = 32.9 bits (76), Expect = 0.003
 Identities = 8/23 (34%), Positives = 15/23 (65%)

Query: 1   MKVRVYTASEVESELEVAKREYL 23
           ++   YTA  ++ +LE A RE++
Sbjct: 90  LRPEAYTAENLDEQLEEAAREFI 112


Family of uncharacterized proteins from C. elegans and A. thaliana. Length = 112

Conserved Domains Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00