Citrus Sinensis ID: 046257
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 838 | 2.2.26 [Sep-21-2011] | |||||||
| Q9ZUW3 | 868 | Pentatricopeptide repeat- | yes | no | 0.963 | 0.929 | 0.635 | 0.0 | |
| Q9SS60 | 882 | Pentatricopeptide repeat- | no | no | 0.957 | 0.909 | 0.372 | 1e-157 | |
| Q9SVP7 | 1064 | Pentatricopeptide repeat- | no | no | 0.958 | 0.754 | 0.343 | 1e-151 | |
| Q9SUH6 | 792 | Pentatricopeptide repeat- | no | no | 0.880 | 0.931 | 0.359 | 1e-149 | |
| Q9FIB2 | 995 | Putative pentatricopeptid | no | no | 0.948 | 0.798 | 0.369 | 1e-148 | |
| Q9SMZ2 | 990 | Pentatricopeptide repeat- | no | no | 0.924 | 0.782 | 0.363 | 1e-148 | |
| Q9CAA8 | 743 | Putative pentatricopeptid | no | no | 0.739 | 0.834 | 0.400 | 1e-147 | |
| Q5G1T1 | 850 | Pentatricopeptide repeat- | no | no | 0.910 | 0.897 | 0.357 | 1e-146 | |
| Q3E6Q1 | 809 | Pentatricopeptide repeat- | no | no | 0.880 | 0.912 | 0.363 | 1e-145 | |
| Q9SN39 | 871 | Pentatricopeptide repeat- | no | no | 0.900 | 0.866 | 0.357 | 1e-144 |
| >sp|Q9ZUW3|PP172_ARATH Pentatricopeptide repeat-containing protein At2g27610 OS=Arabidopsis thaliana GN=PCMP-H60 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 1098 bits (2841), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 522/822 (63%), Positives = 640/822 (77%), Gaps = 15/822 (1%)
Query: 32 QSLFDRSPQRNFVEYNRLLFEYCRDSLHQEALNLFLGIRRLGLPLFGSTLSSVLKTCGCL 91
+LFD+SP R+ Y LLF + RD QEA LFL I RLG+ + S SSVLK L
Sbjct: 47 HNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLGMEMDCSIFSSVLKVSATL 106
Query: 92 FDHVFGRQVHCECVKSGFARDVNVSTSLVDLYMRTNNVEDGRRVFDDMNESNVVSWTSLL 151
D +FGRQ+HC+C+K GF DV+V TSLVD YM+ +N +DGR+VFD+M E NVV+WT+L+
Sbjct: 107 CDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVTWTTLI 166
Query: 152 SGYARNKMNDRVLELFHRMQVEGIKPNSFTFSTVLGVLADEGIVATAVQVHTMVIKNGGE 211
SGYARN MND VL LF RMQ EG +PNSFTF+ LGVLA+EG+ +QVHT+V+KNG +
Sbjct: 167 SGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLD 226
Query: 212 VVTSVCNALISMYLKSKMVRDARAVFDGMEDRDSITWNSMVAGYVTNELHMEAFETFNNM 271
V N+LI++YLK VR AR +FD E + +TWNSM++GY N L +EA F +M
Sbjct: 227 KTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSM 286
Query: 272 GLAGAELTRSTFVSVIKLCATTKELRLARQLHSQVLKNGIDFDHNIRTGLMVAYSKCGKM 331
L L+ S+F SVIKLCA KELR QLH V+K G FD NIRT LMVAYSKC M
Sbjct: 287 RLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCTAM 346
Query: 332 EDASKIFSMMREMKDVVSWTAMISGHLQNGAIDLAVNFFCQMTREGVRPNGFTYSIILTA 391
DA ++F + + +VVSWTAMISG LQN + AV+ F +M R+GVRPN FTYS+ILTA
Sbjct: 347 LDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTA 406
Query: 392 QPAVSPFQVHAHIIKTNYEKSFSVGTALLNAYVKKGILDEAAKVFELIDEKDIVAWSAML 451
P +SP +VHA ++KTNYE+S +VGTALL+AYVK G ++EAAKVF ID+KDIVAWSAML
Sbjct: 407 LPVISPSEVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAML 466
Query: 452 AGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFHACSIKAKL 511
AGYAQ G+TE A+K++ +LT G+KPNEFTFSS++N C A +A++ QGKQFH +IK++L
Sbjct: 467 AGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRL 526
Query: 512 NNALCVSSALVTMYSKKGNIESASEVFKRQRKRDLVSWNSMICGYAQHGHTKKALEVFKE 571
+++LCVSSAL+TMY+KKGNIESA EVFKRQR++DLVSWNSMI GYAQHG KAL+VFKE
Sbjct: 527 DSSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKE 586
Query: 572 MRRQDLEFDGITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAG 631
M+++ ++ DG+TFIGV ACTHAGLV+EG++YFDIMV + I PT EH SCMVDLYSRAG
Sbjct: 587 MKKRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAG 646
Query: 632 MLEKAMDIINRMPFAASATVWRTVLAACR--------------LISLQPHDSAIYVLLSN 677
LEKAM +I MP A +T+WRT+LAACR +I+++P DSA YVLLSN
Sbjct: 647 QLEKAMKVIENMPNPAGSTIWRTILAACRVHKKTELGRLAAEKIIAMKPEDSAAYVLLSN 706
Query: 678 MYAATGHWQERARVRKLMNDRKVKKEAGYSWIEVKNKTYSFLAGDISHPQSNQIYSKLEE 737
MYA +G WQERA+VRKLMN+R VKKE GYSWIEVKNKTYSFLAGD SHP +QIY KLE+
Sbjct: 707 MYAESGDWQERAKVRKLMNERNVKKEPGYSWIEVKNKTYSFLAGDRSHPLKDQIYMKLED 766
Query: 738 LSTRLKDAGYKPDTSYVLQDIDDEHKEAILSQHSERLAIAFGLVATPAGAPLQIVKNLRV 797
LSTRLKD GY+PDTSYVLQDIDDEHKEA+L+QHSERLAIAFGL+ATP G+PL I+KNLRV
Sbjct: 767 LSTRLKDLGYEPDTSYVLQDIDDEHKEAVLAQHSERLAIAFGLIATPKGSPLLIIKNLRV 826
Query: 798 CGDCHTVIKLISKLERRDIVVRDTNRFHHF-KEGLCSCGDYW 838
CGDCH VIKLI+K+E R+IVVRD+NRFHHF +G+CSCGD+W
Sbjct: 827 CGDCHLVIKLIAKIEEREIVVRDSNRFHHFSSDGVCSCGDFW 868
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SS60|PP210_ARATH Pentatricopeptide repeat-containing protein At3g03580 OS=Arabidopsis thaliana GN=PCMP-H23 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 555 bits (1429), Expect = e-157, Method: Compositional matrix adjust.
Identities = 308/827 (37%), Positives = 472/827 (57%), Gaps = 25/827 (3%)
Query: 33 SLFDR-SPQRNFVEYNRLLFEYCRDSLHQEALNLFLGIRRLGLPLFGSTLSSVLKTCGCL 91
S+F R SP +N +N ++ + ++ L EAL + +R + T SV+K C L
Sbjct: 60 SVFRRVSPAKNVYLWNSIIRAFSKNGLFPEALEFYGKLRESKVSPDKYTFPSVIKACAGL 119
Query: 92 FDHVFGRQVHCECVKSGFARDVNVSTSLVDLYMRTNNVEDGRRVFDDMNESNVVSWTSLL 151
FD G V+ + + GF D+ V +LVD+Y R + R+VFD+M ++VSW SL+
Sbjct: 120 FDAEMGDLVYEQILDMGFESDLFVGNALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLI 179
Query: 152 SGYARNKMNDRVLELFHRMQVEGIKPNSFTFSTVLGVLADEGIVATAVQVHTMVIKNGGE 211
SGY+ + + LE++H ++ I P+SFT S+VL + +V +H +K+G
Sbjct: 180 SGYSSHGYYEEALEIYHELKNSWIVPDSFTVSSVLPAFGNLLVVKQGQGLHGFALKSGVN 239
Query: 212 VVTSVCNALISMYLKSKMVRDARAVFDGMEDRDSITWNSMVAGYVTNELHMEAFETF-NN 270
V V N L++MYLK + DAR VFD M+ RDS+++N+M+ GY+ E+ E+ F N
Sbjct: 240 SVVVVNNGLVAMYLKFRRPTDARRVFDEMDVRDSVSYNTMICGYLKLEMVEESVRMFLEN 299
Query: 271 MGLAGAELTRSTFVSVIKLCATTKELRLARQLHSQVLKNGIDFDHNIRTGLMVAYSKCGK 330
+ +L T SV++ C ++L LA+ +++ +LK G + +R L+ Y+KCG
Sbjct: 300 LDQFKPDLL--TVSSVLRACGHLRDLSLAKYIYNYMLKAGFVLESTVRNILIDVYAKCGD 357
Query: 331 MEDASKIFSMMREMKDVVSWTAMISGHLQNGAIDLAVNFFCQMTREGVRPNGFTYSIILT 390
M A +F+ M E KD VSW ++ISG++Q+G + A+ F M + + TY ++++
Sbjct: 358 MITARDVFNSM-ECKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLIS 416
Query: 391 AQPAVSPFQ----VHAHIIKTNYEKSFSVGTALLNAYVKKGILDEAAKVFELIDEKDIVA 446
++ + +H++ IK+ SV AL++ Y K G + ++ K+F + D V
Sbjct: 417 VSTRLADLKFGKGLHSNGIKSGICIDLSVSNALIDMYAKCGEVGDSLKIFSSMGTGDTVT 476
Query: 447 WSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFHACS 506
W+ +++ + GD +++ Q+ V P+ TF + C A AA GK+ H C
Sbjct: 477 WNTVISACVRFGDFATGLQVTTQMRKSEVVPDMATFLVTLPMC-ASLAAKRLGKEIHCCL 535
Query: 507 IKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQRKRDLVSWNSMICGYAQHGHTKKAL 566
++ + L + +AL+ MYSK G +E++S VF+R +RD+V+W MI Y +G +KAL
Sbjct: 536 LRFGYESELQIGNALIEMYSKCGCLENSSRVFERMSRRDVVTWTGMIYAYGMYGEGEKAL 595
Query: 567 EVFKEMRRQDLEFDGITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDL 626
E F +M + + D + FI +I AC+H+GLVDEG F+ M + I P +EHY+C+VDL
Sbjct: 596 ETFADMEKSGIVPDSVVFIAIIYACSHSGLVDEGLACFEKMKTHYKIDPMIEHYACVVDL 655
Query: 627 YSRAGMLEKAMDIINRMPFAASATVWRTVLAAC--------------RLISLQPHDSAIY 672
SR+ + KA + I MP A++W +VL AC R+I L P D
Sbjct: 656 LSRSQKISKAEEFIQAMPIKPDASIWASVLRACRTSGDMETAERVSRRIIELNPDDPGYS 715
Query: 673 VLLSNMYAATGHWQERARVRKLMNDRKVKKEAGYSWIEVKNKTYSFLAGDISHPQSNQIY 732
+L SN YAA W + + +RK + D+ + K GYSWIEV + F +GD S PQS IY
Sbjct: 716 ILASNAYAALRKWDKVSLIRKSLKDKHITKNPGYSWIEVGKNVHVFSSGDDSAPQSEAIY 775
Query: 733 SKLEELSTRLKDAGYKPDTSYVLQDI-DDEHKEAILSQHSERLAIAFGLVATPAGAPLQI 791
LE L + + GY PD V Q++ ++E K ++ HSERLAIAFGL+ T G PLQ+
Sbjct: 776 KSLEILYSLMAKEGYIPDPREVSQNLEEEEEKRRLICGHSERLAIAFGLLNTEPGTPLQV 835
Query: 792 VKNLRVCGDCHTVIKLISKLERRDIVVRDTNRFHHFKEGLCSCGDYW 838
+KNLRVCGDCH V KLISK+ R+I+VRD NRFH FK+G CSC D W
Sbjct: 836 MKNLRVCGDCHEVTKLISKIVGREILVRDANRFHLFKDGTCSCKDRW 882
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SVP7|PP307_ARATH Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana GN=PCMP-H42 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 535 bits (1378), Expect = e-151, Method: Compositional matrix adjust.
Identities = 288/839 (34%), Positives = 463/839 (55%), Gaps = 36/839 (4%)
Query: 34 LFDRSPQRNFVEYNRLLFEYCRDSLHQ----------------EALNLFLGIRRLGLPLF 77
L D + FV+ R +F+ R H EA+ LF + LG+
Sbjct: 228 LIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPT 287
Query: 78 GSTLSSVLKTCGCLFDHVFGRQVHCECVKSGFARDVNVSTSLVDLYMRTNNVEDGRRVFD 137
SSVL C + G Q+H +K GF+ D V +LV LY N+ +F
Sbjct: 288 PYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFS 347
Query: 138 DMNESNVVSWTSLLSGYARNKMNDRVLELFHRMQVEGIKPNSFTFSTVLGVLADEGIVAT 197
+M++ + V++ +L++G ++ ++ +ELF RM ++G++P+S T ++++ + +G +
Sbjct: 348 NMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFR 407
Query: 198 AVQVHTMVIKNGGEVVTSVCNALISMYLKSKMVRDARAVFDGMEDRDSITWNSMVAGYVT 257
Q+H K G + AL+++Y K + A F E + + WN M+ Y
Sbjct: 408 GQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGL 467
Query: 258 NELHMEAFETFNNMGLAGAELTRSTFVSVIKLCATTKELRLARQLHSQVLKNGIDFDHNI 317
+ +F F M + + T+ S++K C +L L Q+HSQ++K + +
Sbjct: 468 LDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYV 527
Query: 318 RTGLMVAYSKCGKMEDASKIFSMMREMKDVVSWTAMISGHLQNGAIDLAVNFFCQMTREG 377
+ L+ Y+K GK++ A I + KDVVSWT MI+G+ Q D A+ F QM G
Sbjct: 528 CSVLIDMYAKLGKLDTAWDIL-IRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRG 586
Query: 378 VRPN--GFTYSIILTA--QPAVSPFQVHAHIIKTNYEKSFSVGTALLNAYVKKGILDEAA 433
+R + G T ++ A Q Q+HA + + AL+ Y + G ++E+
Sbjct: 587 IRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESY 646
Query: 434 KVFELIDEKDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPS 493
FE + D +AW+A+++G+ Q G+ E A++++ ++ EG+ N FTF S + A + +
Sbjct: 647 LAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKA-ASET 705
Query: 494 AAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQRKRDLVSWNSMI 553
A ++QGKQ HA K ++ V +AL++MY+K G+I A + F ++ VSWN++I
Sbjct: 706 ANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAII 765
Query: 554 CGYAQHGHTKKALEVFKEMRRQDLEFDGITFIGVITACTHAGLVDEGQQYFDIMVNEHHI 613
Y++HG +AL+ F +M ++ + +T +GV++AC+H GLVD+G YF+ M +E+ +
Sbjct: 766 NAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGL 825
Query: 614 YPTMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAAC-------------- 659
P EHY C+VD+ +RAG+L +A + I MP A VWRT+L+AC
Sbjct: 826 SPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGEFAAH 885
Query: 660 RLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMNDRKVKKEAGYSWIEVKNKTYSFL 719
L+ L+P DSA YVLLSN+YA + W R R+ M ++ VKKE G SWIEVKN +SF
Sbjct: 886 HLLELEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSFY 945
Query: 720 AGDISHPQSNQIYSKLEELSTRLKDAGYKPDTSYVLQDIDDEHKEAILSQHSERLAIAFG 779
GD +HP +++I+ ++L+ R + GY D +L ++ E K+ I+ HSE+LAI+FG
Sbjct: 946 VGDQNHPLADEIHEYFQDLTKRASEIGYVQDCFSLLNELQHEQKDPIIFIHSEKLAISFG 1005
Query: 780 LVATPAGAPLQIVKNLRVCGDCHTVIKLISKLERRDIVVRDTNRFHHFKEGLCSCGDYW 838
L++ PA P+ ++KNLRVC DCH IK +SK+ R+I+VRD RFHHF+ G CSC DYW
Sbjct: 1006 LLSLPATVPINVMKNLRVCNDCHAWIKFVSKVSNREIIVRDAYRFHHFEGGACSCKDYW 1064
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SUH6|PP341_ARATH Pentatricopeptide repeat-containing protein At4g30700 OS=Arabidopsis thaliana GN=DYW9 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 530 bits (1366), Expect = e-149, Method: Compositional matrix adjust.
Identities = 272/757 (35%), Positives = 437/757 (57%), Gaps = 19/757 (2%)
Query: 99 QVHCECVKSGFARDVNVSTSLVDLYMRTNNVEDGRRVFDDMNESNVVSWTSLLSGYARNK 158
Q H + + GF D+++ T L + R +F + +V + L+ G++ N+
Sbjct: 38 QTHAQIILHGFRNDISLLTKLTQRLSDLGAIYYARDIFLSVQRPDVFLFNVLMRGFSVNE 97
Query: 159 MNDRVLELF-HRMQVEGIKPNSFTFSTVLGVLADEGIVATAVQVHTMVIKNGGEVVTSVC 217
L +F H + +KPNS T++ + + +H + +G + +
Sbjct: 98 SPHSSLSVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRAGRVIHGQAVVDGCDSELLLG 157
Query: 218 NALISMYLKSKMVRDARAVFDGMEDRDSITWNSMVAGYVTNELHMEAFETFNNM-GLAGA 276
+ ++ MY K V DAR VFD M ++D+I WN+M++GY NE+++E+ + F ++ +
Sbjct: 158 SNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESCT 217
Query: 277 ELTRSTFVSVIKLCATTKELRLARQLHSQVLKNGIDFDHNIRTGLMVAYSKCGKMEDASK 336
L +T + ++ A +ELRL Q+HS K G + TG + YSKCGK++ S
Sbjct: 218 RLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMGSA 277
Query: 337 IFSMMREMKDVVSWTAMISGHLQNGAIDLAVNFFCQMTREGVRPNGFTY-SIILTAQPAV 395
+F R+ D+V++ AMI G+ NG +L+++ F ++ G R T S++ + +
Sbjct: 278 LFREFRK-PDIVAYNAMIHGYTSNGETELSLSLFKELMLSGARLRSSTLVSLVPVSGHLM 336
Query: 396 SPFQVHAHIIKTNYEKSFSVGTALLNAYVKKGILDEAAKVFELIDEKDIVAWSAMLAGYA 455
+ +H + +K+N+ SV TAL Y K ++ A K+F+ EK + +W+AM++GY
Sbjct: 337 LIYAIHGYCLKSNFLSHASVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYT 396
Query: 456 QIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFHACSIKAKLNNAL 515
Q G TE A+ ++R++ PN T + +++AC A A+ GK H +++
Sbjct: 397 QNGLTEDAISLFREMQKSEFSPNPVTITCILSAC-AQLGALSLGKWVHDLVRSTDFESSI 455
Query: 516 CVSSALVTMYSKKGNIESASEVFKRQRKRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQ 575
VS+AL+ MY+K G+I A +F K++ V+WN+MI GY HG ++AL +F EM
Sbjct: 456 YVSTALIGMYAKCGSIAEARRLFDLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNS 515
Query: 576 DLEFDGITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEK 635
+ +TF+ V+ AC+HAGLV EG + F+ M++ + P+++HY+CMVD+ RAG L++
Sbjct: 516 GITPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACMVDILGRAGHLQR 575
Query: 636 AMDIINRMPFAASATVWRTVLAACR--------------LISLQPHDSAIYVLLSNMYAA 681
A+ I M ++VW T+L ACR L L P + +VLLSN+++A
Sbjct: 576 ALQFIEAMSIEPGSSVWETLLGACRIHKDTNLARTVSEKLFELDPDNVGYHVLLSNIHSA 635
Query: 682 TGHWQERARVRKLMNDRKVKKEAGYSWIEVKNKTYSFLAGDISHPQSNQIYSKLEELSTR 741
++ + A VR+ RK+ K GY+ IE+ + F +GD SHPQ +IY KLE+L +
Sbjct: 636 DRNYPQAATVRQTAKKRKLAKAPGYTLIEIGETPHVFTSGDQSHPQVKEIYEKLEKLEGK 695
Query: 742 LKDAGYKPDTSYVLQDIDDEHKEAILSQHSERLAIAFGLVATPAGAPLQIVKNLRVCGDC 801
+++AGY+P+T L D+++E +E ++ HSERLAIAFGL+AT G ++I+KNLRVC DC
Sbjct: 696 MREAGYQPETELALHDVEEEERELMVKVHSERLAIAFGLIATEPGTEIRIIKNLRVCLDC 755
Query: 802 HTVIKLISKLERRDIVVRDTNRFHHFKEGLCSCGDYW 838
HTV KLISK+ R IVVRD NRFHHFK+G+CSCGDYW
Sbjct: 756 HTVTKLISKITERVIVVRDANRFHHFKDGVCSCGDYW 792
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FIB2|PP373_ARATH Putative pentatricopeptide repeat-containing protein At5g09950 OS=Arabidopsis thaliana GN=PCMP-H35 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 528 bits (1359), Expect = e-148, Method: Compositional matrix adjust.
Identities = 307/830 (36%), Positives = 469/830 (56%), Gaps = 35/830 (4%)
Query: 41 RNFVEYNRLLFEYCRDSLHQEALNLFLGIRRLGLPLFGSTLSSVLKTCGCLF--DHVFGR 98
+N V +N ++ Y + + A +F ++ G T S++ T L D
Sbjct: 169 KNSVSWNSIISVYSQAGDQRSAFRIFSSMQYDGSRPTEYTFGSLVTTACSLTEPDVRLLE 228
Query: 99 QVHCECVKSGFARDVNVSTSLVDLYMRTNNVEDGRRVFDDMNESNVVSWTSLLSGYARNK 158
Q+ C KSG D+ V + LV + ++ ++ R+VF+ M N V+ L+ G R K
Sbjct: 229 QIMCTIQKSGLLTDLFVGSGLVSAFAKSGSLSYARKVFNQMETRNAVTLNGLMVGLVRQK 288
Query: 159 MNDRVLELFHRMQ-VEGIKPNSFTF---STVLGVLADEGIVATAVQVHTMVIKNG-GEVV 213
+ +LF M + + P S+ S LA+E + +VH VI G + +
Sbjct: 289 WGEEATKLFMDMNSMIDVSPESYVILLSSFPEYSLAEEVGLKKGREVHGHVITTGLVDFM 348
Query: 214 TSVCNALISMYLKSKMVRDARAVFDGMEDRDSITWNSMVAGYVTNELHMEAFETFNNMGL 273
+ N L++MY K + DAR VF M D+DS++WNSM+ G N +EA E + +M
Sbjct: 349 VGIGNGLVNMYAKCGSIADARRVFYFMTDKDSVSWNSMITGLDQNGCFIEAVERYKSMRR 408
Query: 274 AGAELTRSTFVSVIKLCATTKELRLARQLHSQVLKNGIDFDHNIRTGLMVAYSKCGKMED 333
T +S + CA+ K +L +Q+H + LK GID + ++ LM Y++ G + +
Sbjct: 409 HDILPGSFTLISSLSSCASLKWAKLGQQIHGESLKLGIDLNVSVSNALMTLYAETGYLNE 468
Query: 334 ASKIFSMMREMKDVVSWTAMISGHLQNGAIDL--AVNFFCQMTREGVRPNGFTYSIILTA 391
KIFS M E D VSW ++I G L L AV F R G + N T+S +L+A
Sbjct: 469 CRKIFSSMPE-HDQVSWNSII-GALARSERSLPEAVVCFLNAQRAGQKLNRITFSSVLSA 526
Query: 392 QPAVS----PFQVHAHIIKTNYEKSFSVGTALLNAYVKKGILDEAAKVF-ELIDEKDIVA 446
++S Q+H +K N + AL+ Y K G +D K+F + + +D V
Sbjct: 527 VSSLSFGELGKQIHGLALKNNIADEATTENALIACYGKCGEMDGCEKIFSRMAERRDNVT 586
Query: 447 WSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFHACS 506
W++M++GY A+ + + G + + F +++V++A A A +E+G + HACS
Sbjct: 587 WNSMISGYIHNELLAKALDLVWFMLQTGQRLDSFMYATVLSA-FASVATLERGMEVHACS 645
Query: 507 IKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQRKRDLVSWNSMICGYAQHGHTKKAL 566
++A L + + V SALV MYSK G ++ A F R+ SWNSMI GYA+HG ++AL
Sbjct: 646 VRACLESDVVVGSALVDMYSKCGRLDYALRFFNTMPVRNSYSWNSMISGYARHGQGEEAL 705
Query: 567 EVFKEMRRQ-DLEFDGITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVD 625
++F+ M+ D +TF+GV++AC+HAGL++EG ++F+ M + + + P +EH+SCM D
Sbjct: 706 KLFETMKLDGQTPPDHVTFVGVLSACSHAGLLEEGFKHFESMSDSYGLAPRIEHFSCMAD 765
Query: 626 LYSRAGMLEKAMDIINRMPFAASATVWRTVLAAC----------------RLISLQPHDS 669
+ RAG L+K D I +MP + +WRTVL AC L L+P ++
Sbjct: 766 VLGRAGELDKLEDFIEKMPMKPNVLIWRTVLGACCRANGRKAELGKKAAEMLFQLEPENA 825
Query: 670 AIYVLLSNMYAATGHWQERARVRKLMNDRKVKKEAGYSWIEVKNKTYSFLAGDISHPQSN 729
YVLL NMYAA G W++ + RK M D VKKEAGYSW+ +K+ + F+AGD SHP ++
Sbjct: 826 VNYVLLGNMYAAGGRWEDLVKARKKMKDADVKKEAGYSWVTMKDGVHMFVAGDKSHPDAD 885
Query: 730 QIYSKLEELSTRLKDAGYKPDTSYVLQDIDDEHKEAILSQHSERLAIAFGLVATPAGA-P 788
IY KL+EL+ +++DAGY P T + L D++ E+KE ILS HSE+LA+AF L A + P
Sbjct: 886 VIYKKLKELNRKMRDAGYVPQTGFALYDLEQENKEEILSYHSEKLAVAFVLAAQRSSTLP 945
Query: 789 LQIVKNLRVCGDCHTVIKLISKLERRDIVVRDTNRFHHFKEGLCSCGDYW 838
++I+KNLRVCGDCH+ K ISK+E R I++RD+NRFHHF++G CSC D+W
Sbjct: 946 IRIMKNLRVCGDCHSAFKYISKIEGRQIILRDSNRFHHFQDGACSCSDFW 995
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SMZ2|PP347_ARATH Pentatricopeptide repeat-containing protein At4g33170 OS=Arabidopsis thaliana GN=PCMP-H53 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 525 bits (1353), Expect = e-148, Method: Compositional matrix adjust.
Identities = 301/829 (36%), Positives = 466/829 (56%), Gaps = 54/829 (6%)
Query: 29 KKDQSLFDRSPQRNFVEYNRLLFEYCRDSLHQEALNLFLGIRRLGLPLFGSTLSSVLKTC 88
K+ + LF+ P R+ V +N +L Y +EA++L GL TL
Sbjct: 197 KEGKVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAFHSSGLNPNEITLR------ 250
Query: 89 GCLFDHVFGRQVHCECVKSGFARDVNVSTSLVDLYMRTNNVEDGRRVFDDMNESNVVSWT 148
L + G VKS FA N ++S+ ++ R
Sbjct: 251 --LLARISGDDSDAGQVKS-FANG-NDASSVSEIIFRNKG-------------------- 286
Query: 149 SLLSGYARNKMNDRVLELFHRMQVEGIKPNSFTFSTVLGVLADEGIVATAVQVHTMVIKN 208
LS Y + +L+ F M ++ + TF +L +A QVH M +K
Sbjct: 287 --LSEYLHSGQYSALLKCFADMVESDVECDQVTFILMLATAVKVDSLALGQQVHCMALKL 344
Query: 209 GGEVVTSVCNALISMYLKSKMVRDARAVFDGMEDRDSITWNSMVAGYVTNELHMEAFETF 268
G +++ +V N+LI+MY K + AR VFD M +RD I+WNS++AG N L +EA F
Sbjct: 345 GLDLMLTVSNSLINMYCKLRKFGFARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCLF 404
Query: 269 NNMGLAGAELTRSTFVSVIKLCATTKE-LRLARQLHSQVLKNGIDFDHNIRTGLMVAYSK 327
+ G + + T SV+K ++ E L L++Q+H +K D + T L+ AYS+
Sbjct: 405 MQLLRCGLKPDQYTMTSVLKAASSLPEGLSLSKQVHVHAIKINNVSDSFVSTALIDAYSR 464
Query: 328 CGKMEDASKIFSMMREMKDVVSWTAMISGHLQNGAIDLAVNFFCQMTREGVRPNGFTYSI 387
M++A +F R D+V+W AM++G+ Q+ + F M ++G R + FT +
Sbjct: 465 NRCMKEAEILFE--RHNFDLVAWNAMMAGYTQSHDGHKTLKLFALMHKQGERSDDFTLAT 522
Query: 388 ILTAQPAVSPF----QVHAHIIKTNYEKSFSVGTALLNAYVKKGILDEAAKVFELIDEKD 443
+ + QVHA+ IK+ Y+ V + +L+ YVK G + A F+ I D
Sbjct: 523 VFKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPD 582
Query: 444 IVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFH 503
VAW+ M++G + G+ E A ++ Q+ GV P+EFT +++ A + +A +EQG+Q H
Sbjct: 583 DVAWTTMISGCIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKASSCLTA-LEQGRQIH 641
Query: 504 ACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQRKRDLVSWNSMICGYAQHGHTK 563
A ++K N V ++LV MY+K G+I+ A +FKR ++ +WN+M+ G AQHG K
Sbjct: 642 ANALKLNCTNDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGK 701
Query: 564 KALEVFKEMRRQDLEFDGITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCM 623
+ L++FK+M+ ++ D +TFIGV++AC+H+GLV E ++ M ++ I P +EHYSC+
Sbjct: 702 ETLQLFKQMKSLGIKPDKVTFIGVLSACSHSGLVSEAYKHMRSMHGDYGIKPEIEHYSCL 761
Query: 624 VDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACR--------------LISLQPHDS 669
D RAG++++A ++I M ASA+++RT+LAACR L+ L+P DS
Sbjct: 762 ADALGRAGLVKQAENLIESMSMEASASMYRTLLAACRVQGDTETGKRVATKLLELEPLDS 821
Query: 670 AIYVLLSNMYAATGHWQERARVRKLMNDRKVKKEAGYSWIEVKNKTYSFLAGDISHPQSN 729
+ YVLLSNMYAA W E R +M KVKK+ G+SWIEVKNK + F+ D S+ Q+
Sbjct: 822 SAYVLLSNMYAAASKWDEMKLARTMMKGHKVKKDPGFSWIEVKNKIHIFVVDDRSNRQTE 881
Query: 730 QIYSKLEELSTRLKDAGYKPDTSYVLQDIDDEHKEAILSQHSERLAIAFGLVATPAGAPL 789
IY K++++ +K GY P+T + L D+++E KE L HSE+LA+AFGL++TP P+
Sbjct: 882 LIYRKVKDMIRDIKQEGYVPETDFTLVDVEEEEKERALYYHSEKLAVAFGLLSTPPSTPI 941
Query: 790 QIVKNLRVCGDCHTVIKLISKLERRDIVVRDTNRFHHFKEGLCSCGDYW 838
+++KNLRVCGDCH +K I+K+ R+IV+RD NRFH FK+G+CSCGDYW
Sbjct: 942 RVIKNLRVCGDCHNAMKYIAKVYNREIVLRDANRFHRFKDGICSCGDYW 990
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CAA8|PP108_ARATH Putative pentatricopeptide repeat-containing protein At1g68930 OS=Arabidopsis thaliana GN=PCMP-H22 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 524 bits (1349), Expect = e-147, Method: Compositional matrix adjust.
Identities = 268/669 (40%), Positives = 404/669 (60%), Gaps = 49/669 (7%)
Query: 218 NALISMYLKSKMVRDARAVFDGMEDRDSITWNSMVAGYVTNELHMEAFETFNNMGLA-GA 276
N L+ Y K+ ++ + + F+ + DRD +TWN ++ GY + L A + +N M A
Sbjct: 76 NNLLLAYSKAGLISEMESTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMRDFSA 135
Query: 277 ELTRSTFVSVIKLCATTKELRLARQLHSQVLKNGIDFDHNIRTGLMVAYSKCGKMEDASK 336
LTR T ++++KL ++ + L +Q+H QV+K G + + + L+ Y+ G + DA K
Sbjct: 136 NLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKK 195
Query: 337 IF----------------------------SMMREM-KDVVSWTAMISGHLQNGAIDLAV 367
+F + R M KD VSW AMI G QNG A+
Sbjct: 196 VFYGLDDRNTVMYNSLMGGLLACGMIEDALQLFRGMEKDSVSWAAMIKGLAQNGLAKEAI 255
Query: 368 NFFCQMTREGVRPNGFTYSIILTAQPAVSPF----QVHAHIIKTNYEKSFSVGTALLNAY 423
F +M +G++ + + + +L A + Q+HA II+TN++ VG+AL++ Y
Sbjct: 256 ECFREMKVQGLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMY 315
Query: 424 VKKGILDEAAKVFELIDEKDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFS 483
K L A VF+ + +K++V+W+AM+ GY Q G E AVKI+ + G+ P+ +T
Sbjct: 316 CKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLG 375
Query: 484 SVINACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQRK 543
I+AC A +++E+G QFH +I + L + + VS++LVT+Y K G+I+ ++ +F
Sbjct: 376 QAISAC-ANVSSLEEGSQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNV 434
Query: 544 RDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGITFIGVITACTHAGLVDEGQQY 603
RD VSW +M+ YAQ G + +++F +M + L+ DG+T GVI+AC+ AGLV++GQ+Y
Sbjct: 435 RDAVSWTAMVSAYAQFGRAVETIQLFDKMVQHGLKPDGVTLTGVISACSRAGLVEKGQRY 494
Query: 604 FDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACR--- 660
F +M +E+ I P++ HYSCM+DL+SR+G LE+AM IN MPF A W T+L+ACR
Sbjct: 495 FKLMTSEYGIVPSIGHYSCMIDLFSRSGRLEEAMRFINGMPFPPDAIGWTTLLSACRNKG 554
Query: 661 -----------LISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMNDRKVKKEAGYSWI 709
LI L PH A Y LLS++YA+ G W A++R+ M ++ VKKE G SWI
Sbjct: 555 NLEIGKWAAESLIELDPHHPAGYTLLSSIYASKGKWDSVAQLRRGMREKNVKKEPGQSWI 614
Query: 710 EVKNKTYSFLAGDISHPQSNQIYSKLEELSTRLKDAGYKPDTSYVLQDIDDEHKEAILSQ 769
+ K K +SF A D S P +QIY+KLEEL+ ++ D GYKPDTS+V D+++ K +L+
Sbjct: 615 KWKGKLHSFSADDESSPYLDQIYAKLEELNNKIIDNGYKPDTSFVHHDVEEAVKVKMLNY 674
Query: 770 HSERLAIAFGLVATPAGAPLQIVKNLRVCGDCHTVIKLISKLERRDIVVRDTNRFHHFKE 829
HSERLAIAFGL+ P+G P+++ KNLRVC DCH K IS + R+I+VRD RFH FK+
Sbjct: 675 HSERLAIAFGLIFVPSGQPIRVGKNLRVCVDCHNATKHISSVTGREILVRDAVRFHRFKD 734
Query: 830 GLCSCGDYW 838
G CSCGD+W
Sbjct: 735 GTCSCGDFW 743
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q5G1T1|PP272_ARATH Pentatricopeptide repeat-containing protein At3g49170, chloroplastic OS=Arabidopsis thaliana GN=EMB2261 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 520 bits (1340), Expect = e-146, Method: Compositional matrix adjust.
Identities = 287/803 (35%), Positives = 462/803 (57%), Gaps = 40/803 (4%)
Query: 68 GIRRLGLPLFGSTLSSVLKTCGCLFDHVFGRQVHCECVKSGFARDVNVSTSLVDLYMRTN 127
GIR P+ T SS+LK+C D G+ VH ++ D + SL+ LY ++
Sbjct: 56 GIR----PMDSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYNSLISLYSKSG 111
Query: 128 NVEDGRRVFDDM---NESNVVSWTSLLSGYARNKMNDRVLELFHRMQVEGIKPNSFTFST 184
+ VF+ M + +VVSW+++++ Y N +++F G+ PN + ++
Sbjct: 112 DSAKAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVPNDYCYTA 171
Query: 185 VLGVLADEGIVATAVQVHTMVIKNGG-EVVTSVCNALISMYLKSK-MVRDARAVFDGMED 242
V+ ++ V ++K G E V +LI M++K + +A VFD M +
Sbjct: 172 VIRACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSE 231
Query: 243 RDSITWNSMVAGYVTNELHMEAFETFNNMGLAGAELTRSTFVSVIKLCATTKELRLARQL 302
+ +TW M+ + EA F +M L+G E + T SV CA + L L +QL
Sbjct: 232 LNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGKQL 291
Query: 303 HSQVLKNGIDFDHNIRTGLMVAYSKC---GKMEDASKIFSMMREMKDVVSWTAMISGHLQ 359
HS +++G+ D + L+ Y+KC G ++D K+F M E V+SWTA+I+G+++
Sbjct: 292 HSWAIRSGLVDD--VECSLVDMYAKCSADGSVDDCRKVFDRM-EDHSVMSWTALITGYMK 348
Query: 360 NGAIDL-AVNFFCQMTREG-VRPNGFTYSIILTAQPAVSPFQVHAHIIKTNYEKSF---- 413
N + A+N F +M +G V PN FT+S A +S +V ++ +++
Sbjct: 349 NCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRVGKQVLGQAFKRGLASNS 408
Query: 414 SVGTALLNAYVKKGILDEAAKVFELIDEKDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSE 473
SV ++++ +VK +++A + FE + EK++V+++ L G + + E A K+ ++T
Sbjct: 409 SVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFKLLSEITER 468
Query: 474 GVKPNEFTFSSVINACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIES 533
+ + FTF+S+++ A ++ +G+Q H+ +K L+ V +AL++MYSK G+I++
Sbjct: 469 ELGVSAFTFASLLSG-VANVGSIRKGEQIHSQVVKLGLSCNQPVCNALISMYSKCGSIDT 527
Query: 534 ASEVFKRQRKRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGITFIGVITACTH 593
AS VF R+++SW SMI G+A+HG + LE F +M + ++ + +T++ +++AC+H
Sbjct: 528 ASRVFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNEVTYVAILSACSH 587
Query: 594 AGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWR 653
GLV EG ++F+ M +H I P MEHY+CMVDL RAG+L A + IN MPF A VWR
Sbjct: 588 VGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEFINTMPFQADVLVWR 647
Query: 654 TVLAACR--------------LISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMNDRK 699
T L ACR ++ L P++ A Y+ LSN+YA G W+E +R+ M +R
Sbjct: 648 TFLGACRVHSNTELGKLAARKILELDPNEPAAYIQLSNIYACAGKWEESTEMRRKMKERN 707
Query: 700 VKKEAGYSWIEVKNKTYSFLAGDISHPQSNQIYSKLEELSTRLKDAGYKPDTSYVLQDID 759
+ KE G SWIEV +K + F GD +HP ++QIY +L+ L T +K GY PDT VL ++
Sbjct: 708 LVKEGGCSWIEVGDKIHKFYVGDTAHPNAHQIYDELDRLITEIKRCGYVPDTDLVLHKLE 767
Query: 760 DEHKEA----ILSQHSERLAIAFGLVATPAGAPLQIVKNLRVCGDCHTVIKLISKLERRD 815
+E+ EA +L QHSE++A+AFGL++T P+++ KNLRVCGDCH +K IS + R+
Sbjct: 768 EENDEAEKERLLYQHSEKIAVAFGLISTSKSRPVRVFKNLRVCGDCHNAMKYISTVSGRE 827
Query: 816 IVVRDTNRFHHFKEGLCSCGDYW 838
IV+RD NRFHHFK+G CSC DYW
Sbjct: 828 IVLRDLNRFHHFKDGKCSCNDYW 850
|
May play a role in embryogenesis. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290 OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 515 bits (1326), Expect = e-145, Method: Compositional matrix adjust.
Identities = 276/759 (36%), Positives = 441/759 (58%), Gaps = 21/759 (2%)
Query: 98 RQVHCECVKSGFARDVNVSTSLVDLYMRTNNVEDGRRVFDDMNESNVVSWTSLLSGYARN 157
RQ+ K+G ++ T LV L+ R +V++ RVF+ ++ V + ++L G+A+
Sbjct: 54 RQILPLVFKNGLYQEHFFQTKLVSLFCRYGSVDEAARVFEPIDSKLNVLYHTMLKGFAKV 113
Query: 158 KMNDRVLELFHRMQVEGIKPNSFTFSTVLGVLADEGIVATAVQVHTMVIKNGGEVVTSVC 217
D+ L+ F RM+ + ++P + F+ +L V DE + ++H +++K+G +
Sbjct: 114 SDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAM 173
Query: 218 NALISMYLKSKMVRDARAVFDGMEDRDSITWNSMVAGYVTNELHMEAFETFNNMGLAGAE 277
L +MY K + V +AR VFD M +RD ++WN++VAGY N + A E +M +
Sbjct: 174 TGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLK 233
Query: 278 LTRSTFVSVIKLCATTKELRLARQLHSQVLKNGIDFDHNIRTGLMVAYSKCGKMEDASKI 337
+ T VSV+ + + + + +++H +++G D NI T L+ Y+KCG +E A ++
Sbjct: 234 PSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQL 293
Query: 338 FSMMREMKDVVSWTAMISGHLQNGAIDLAVNFFCQMTREGVRPNGFTYSIILTAQPAVSP 397
F M E ++VVSW +MI ++QN A+ F +M EGV+P + L A +
Sbjct: 294 FDGMLE-RNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGD 352
Query: 398 FQ----VHAHIIKTNYEKSFSVGTALLNAYVKKGILDEAAKVFELIDEKDIVAWSAMLAG 453
+ +H ++ +++ SV +L++ Y K +D AA +F + + +V+W+AM+ G
Sbjct: 353 LERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILG 412
Query: 454 YAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFHACSIKAKLNN 513
+AQ G A+ + Q+ S VKP+ FT+ SVI A A + K H +++ L+
Sbjct: 413 FAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITA-IAELSITHHAKWIHGVVMRSCLDK 471
Query: 514 ALCVSSALVTMYSKKGNIESASEVFKRQRKRDLVSWNSMICGYAQHGHTKKALEVFKEMR 573
+ V++ALV MY+K G I A +F +R + +WN+MI GY HG K ALE+F+EM+
Sbjct: 472 NVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQ 531
Query: 574 RQDLEFDGITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGML 633
+ ++ +G+TF+ VI+AC+H+GLV+ G + F +M + I +M+HY MVDL RAG L
Sbjct: 532 KGTIKPNGVTFLSVISACSHSGLVEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRL 591
Query: 634 EKAMDIINRMPFAASATVWRTVLAAC--------------RLISLQPHDSAIYVLLSNMY 679
+A D I +MP + V+ +L AC RL L P D +VLL+N+Y
Sbjct: 592 NEAWDFIMQMPVKPAVNVYGAMLGACQIHKNVNFAEKAAERLFELNPDDGGYHVLLANIY 651
Query: 680 AATGHWQERARVRKLMNDRKVKKEAGYSWIEVKNKTYSFLAGDISHPQSNQIYSKLEELS 739
A W++ +VR M + ++K G S +E+KN+ +SF +G +HP S +IY+ LE+L
Sbjct: 652 RAASMWEKVGQVRVSMLRQGLRKTPGCSMVEIKNEVHSFFSGSTAHPDSKKIYAFLEKLI 711
Query: 740 TRLKDAGYKPDTSYVLQDIDDEHKEAILSQHSERLAIAFGLVATPAGAPLQIVKNLRVCG 799
+K+AGY PDT+ VL ++++ KE +LS HSE+LAI+FGL+ T AG + + KNLRVC
Sbjct: 712 CHIKEAGYVPDTNLVL-GVENDVKEQLLSTHSEKLAISFGLLNTTAGTTIHVRKNLRVCA 770
Query: 800 DCHTVIKLISKLERRDIVVRDTNRFHHFKEGLCSCGDYW 838
DCH K IS + R+IVVRD RFHHFK G CSCGDYW
Sbjct: 771 DCHNATKYISLVTGREIVVRDMQRFHHFKNGACSCGDYW 809
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein At4g18750, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 512 bits (1318), Expect = e-144, Method: Compositional matrix adjust.
Identities = 279/780 (35%), Positives = 444/780 (56%), Gaps = 25/780 (3%)
Query: 80 TLSSVLKTCGCLFDHVFGRQVHCECVKSGFARDVNVSTSLVDLYMRTNNVEDGRRVFDDM 139
TL SVL+ C G++V +GF D N+ + L +Y ++++ RVFD++
Sbjct: 96 TLCSVLQLCADSKSLKDGKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVFDEV 155
Query: 140 NESNVVSWTSLLSGYARNKMNDRVLELFHRMQVEGIKPNSFTFSTVLGVLADEGIVATAV 199
+ W L++ A++ + LF +M G++ +S+TFS V + V
Sbjct: 156 KIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGE 215
Query: 200 QVHTMVIKNGGEVVTSVCNALISMYLKSKMVRDARAVFDGMEDRDSITWNSMVAGYVTNE 259
Q+H ++K+G SV N+L++ YLK++ V AR VFD M +RD I+WNS++ GYV+N
Sbjct: 216 QLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNG 275
Query: 260 LHMEAFETFNNMGLAGAELTRSTFVSVIKLCATTKELRLARQLHSQVLKNGIDFDHNIRT 319
L + F M ++G E+ +T VSV CA ++ + L R +HS +K +
Sbjct: 276 LAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCN 335
Query: 320 GLMVAYSKCGKMEDASKIFSMMREMKD--VVSWTAMISGHLQNGAIDLAVNFFCQMTREG 377
L+ YSKCG ++ A +F REM D VVS+T+MI+G+ + G AV F +M EG
Sbjct: 336 TLLDMYSKCGDLDSAKAVF---REMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEG 392
Query: 378 VRPNGFTYSIILTAQPAVSPF----QVHAHIIKTNYEKSFSVGTALLNAYVKKGILDEAA 433
+ P+ +T + +L +VH I + + V AL++ Y K G + EA
Sbjct: 393 ISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAE 452
Query: 434 KVFELIDEKDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEG-VKPNEFTFSSVINACTAP 492
VF + KDI++W+ ++ GY++ A+ ++ L E P+E T + V+ AC +
Sbjct: 453 LVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASL 512
Query: 493 SAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQRKRDLVSWNSM 552
SA ++G++ H ++ + V+++LV MY+K G + A +F +DLVSW M
Sbjct: 513 SA-FDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVM 571
Query: 553 ICGYAQHGHTKKALEVFKEMRRQDLEFDGITFIGVITACTHAGLVDEGQQYFDIMVNEHH 612
I GY HG K+A+ +F +MR+ +E D I+F+ ++ AC+H+GLVDEG ++F+IM +E
Sbjct: 572 IAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECK 631
Query: 613 IYPTMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRL----------- 661
I PT+EHY+C+VD+ +R G L KA I MP AT+W +L CR+
Sbjct: 632 IEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVA 691
Query: 662 ---ISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMNDRKVKKEAGYSWIEVKNKTYSF 718
L+P ++ YVL++N+YA W++ R+RK + R ++K G SWIE+K + F
Sbjct: 692 EKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIF 751
Query: 719 LAGDISHPQSNQIYSKLEELSTRLKDAGYKPDTSYVLQDIDDEHKEAILSQHSERLAIAF 778
+AGD S+P++ I + L ++ R+ + GY P T Y L D ++ KE L HSE+LA+A
Sbjct: 752 VAGDSSNPETENIEAFLRKVRARMIEEGYSPLTKYALIDAEEMEKEEALCGHSEKLAMAL 811
Query: 779 GLVATPAGAPLQIVKNLRVCGDCHTVIKLISKLERRDIVVRDTNRFHHFKEGLCSCGDYW 838
G++++ G +++ KNLRVCGDCH + K +SKL RR+IV+RD+NRFH FK+G CSC +W
Sbjct: 812 GIISSGHGKIIRVTKNLRVCGDCHEMAKFMSKLTRREIVLRDSNRFHQFKDGHCSCRGFW 871
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 838 | ||||||
| 225436683 | 866 | PREDICTED: pentatricopeptide repeat-cont | 0.963 | 0.931 | 0.691 | 0.0 | |
| 356542011 | 876 | PREDICTED: pentatricopeptide repeat-cont | 0.963 | 0.921 | 0.640 | 0.0 | |
| 15226200 | 868 | pentatricopeptide repeat-containing prot | 0.963 | 0.929 | 0.635 | 0.0 | |
| 297822535 | 872 | pentatricopeptide repeat-containing prot | 0.963 | 0.925 | 0.630 | 0.0 | |
| 357453021 | 867 | Pentatricopeptide repeat-containing prot | 0.963 | 0.930 | 0.641 | 0.0 | |
| 449443608 | 878 | PREDICTED: pentatricopeptide repeat-cont | 0.990 | 0.945 | 0.595 | 0.0 | |
| 449510623 | 878 | PREDICTED: LOW QUALITY PROTEIN: pentatri | 0.990 | 0.945 | 0.595 | 0.0 | |
| 125552577 | 874 | hypothetical protein OsI_20194 [Oryza sa | 0.959 | 0.919 | 0.545 | 0.0 | |
| 115464255 | 874 | Os05g0455900 [Oryza sativa Japonica Grou | 0.959 | 0.919 | 0.543 | 0.0 | |
| 242090705 | 878 | hypothetical protein SORBIDRAFT_09g02188 | 0.957 | 0.913 | 0.539 | 0.0 |
| >gi|225436683|ref|XP_002262885.1| PREDICTED: pentatricopeptide repeat-containing protein At2g27610-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1217 bits (3148), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 568/821 (69%), Positives = 682/821 (83%), Gaps = 14/821 (1%)
Query: 32 QSLFDRSPQRNFVEYNRLLFEYCRDSLHQEALNLFLGIRRLGLPLFGSTLSSVLKTCGCL 91
Q LFD +PQ+ N LLFE+ R+ ++EALNLFLG+RR G P GS+LS VLK CGCL
Sbjct: 46 QQLFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCGCL 105
Query: 92 FDHVFGRQVHCECVKSGFARDVNVSTSLVDLYMRTNNVEDGRRVFDDMNESNVVSWTSLL 151
FD + G+QVHC+C+K GF DV+V TSLVD+YM+T +VEDG RVFD+M NVVSWTSLL
Sbjct: 106 FDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSLL 165
Query: 152 SGYARNKMNDRVLELFHRMQVEGIKPNSFTFSTVLGVLADEGIVATAVQVHTMVIKNGGE 211
+GY +N +N++ L+LF +MQ+EGIKPN FTF+ VLG LA +G V VQVHTMVIK+G +
Sbjct: 166 AGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLD 225
Query: 212 VVTSVCNALISMYLKSKMVRDARAVFDGMEDRDSITWNSMVAGYVTNELHMEAFETFNNM 271
V N++++MY KS MV DA+AVFD ME+R++++WNSM+AG+VTN L +EAFE F M
Sbjct: 226 STIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRM 285
Query: 272 GLAGAELTRSTFVSVIKLCATTKELRLARQLHSQVLKNGIDFDHNIRTGLMVAYSKCGKM 331
L G +LT++ F +VIKLCA KE+ A+QLH QV+KNG DFD NI+T LMVAYSKC ++
Sbjct: 286 RLEGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEI 345
Query: 332 EDASKIFSMMREMKDVVSWTAMISGHLQNGAIDLAVNFFCQMTREGVRPNGFTYSIILTA 391
+DA K+F MM +++VVSWTA+ISG++QNG D A+N FCQM REGVRPN FTYS ILTA
Sbjct: 346 DDAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREGVRPNHFTYSTILTA 405
Query: 392 QPAVSPFQVHAHIIKTNYEKSFSVGTALLNAYVKKGILDEAAKVFELIDEKDIVAWSAML 451
AVSP Q+HA ++KTNYE S SVGTAL ++Y K G +EAAK+FELIDEKDIVAWSAML
Sbjct: 406 NAAVSPSQIHALVVKTNYENSPSVGTALSDSYSKIGDANEAAKIFELIDEKDIVAWSAML 465
Query: 452 AGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFHACSIKAKL 511
+GYAQ+GD EGAVKI+ QL EGV+PNEFTFSSV+NAC AP+A+VEQGKQFH+CSIK+
Sbjct: 466 SGYAQMGDIEGAVKIFLQLAKEGVEPNEFTFSSVLNACAAPTASVEQGKQFHSCSIKSGF 525
Query: 512 NNALCVSSALVTMYSKKGNIESASEVFKRQRKRDLVSWNSMICGYAQHGHTKKALEVFKE 571
+NALCVSSALVTMY+K+GNIESA+EVFKRQ RDLVSWNSMI GYAQHG KK+L++F+E
Sbjct: 526 SNALCVSSALVTMYAKRGNIESANEVFKRQVDRDLVSWNSMISGYAQHGCGKKSLKIFEE 585
Query: 572 MRRQDLEFDGITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAG 631
MR ++LE DGITFIGVI+ACTHAGLV+EGQ+YFD+MV ++HI PTMEHYSCMVDLYSRAG
Sbjct: 586 MRSKNLELDGITFIGVISACTHAGLVNEGQRYFDLMVKDYHIVPTMEHYSCMVDLYSRAG 645
Query: 632 MLEKAMDIINRMPFAASATVWRTVLAACR--------------LISLQPHDSAIYVLLSN 677
MLEKAMD+IN+MPF A AT+WRT+LAACR LISLQP DSA YVLLSN
Sbjct: 646 MLEKAMDLINKMPFPAGATIWRTLLAACRVHLNVQLGELAAEKLISLQPQDSAAYVLLSN 705
Query: 678 MYAATGHWQERARVRKLMNDRKVKKEAGYSWIEVKNKTYSFLAGDISHPQSNQIYSKLEE 737
+YA G+WQERA+VRKLM+ +KVKKEAGYSWIEVKNKT+SF+AGD+SHPQS++IY KLEE
Sbjct: 706 IYATAGNWQERAKVRKLMDMKKVKKEAGYSWIEVKNKTFSFMAGDLSHPQSDRIYLKLEE 765
Query: 738 LSTRLKDAGYKPDTSYVLQDIDDEHKEAILSQHSERLAIAFGLVATPAGAPLQIVKNLRV 797
LS RLKDAGY PDT YVL D+++EHKE ILSQHSERLAIAFGL+ATP G P+QIVKNLRV
Sbjct: 766 LSIRLKDAGYYPDTKYVLHDVEEEHKEVILSQHSERLAIAFGLIATPPGTPIQIVKNLRV 825
Query: 798 CGDCHTVIKLISKLERRDIVVRDTNRFHHFKEGLCSCGDYW 838
CGDCHTVIKLISK+E RDIVVRD+NRFHHFK G CSCGDYW
Sbjct: 826 CGDCHTVIKLISKIEGRDIVVRDSNRFHHFKGGSCSCGDYW 866
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356542011|ref|XP_003539465.1| PREDICTED: pentatricopeptide repeat-containing protein At2g27610-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1106 bits (2860), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 526/821 (64%), Positives = 643/821 (78%), Gaps = 14/821 (1%)
Query: 32 QSLFDRSPQRNFVEYNRLLFEYCRDSLHQEALNLFLGIRRLGLPLFGSTLSSVLKTCGCL 91
Q LFD++P R+ ++N+LLF Y R QEAL+LF+ + R GL T+S VL C
Sbjct: 56 QQLFDQTPLRDLKQHNQLLFRYSRCDQTQEALHLFVSLYRSGLSPDSYTMSCVLSVCAGS 115
Query: 92 FDHVFGRQVHCECVKSGFARDVNVSTSLVDLYMRTNNVEDGRRVFDDMNESNVVSWTSLL 151
F+ G QVHC+CVK G ++V SLVD+Y +T NV DGRRVFD+M + +VVSW SLL
Sbjct: 116 FNGTVGEQVHCQCVKCGLVHHLSVGNSLVDMYTKTGNVRDGRRVFDEMGDRDVVSWNSLL 175
Query: 152 SGYARNKMNDRVLELFHRMQVEGIKPNSFTFSTVLGVLADEGIVATAVQVHTMVIKNGGE 211
+GY+ N+ ND+V ELF MQVEG +P+ +T STV+ LA++G VA +Q+H +V+K G E
Sbjct: 176 TGYSWNRFNDQVWELFCLMQVEGYRPDYYTVSTVIAALANQGAVAIGMQIHALVVKLGFE 235
Query: 212 VVTSVCNALISMYLKSKMVRDARAVFDGMEDRDSITWNSMVAGYVTNELHMEAFETFNNM 271
VCN+LISM KS M+RDAR VFD ME++DS++WNSM+AG+V N +EAFETFNNM
Sbjct: 236 TERLVCNSLISMLSKSGMLRDARVVFDNMENKDSVSWNSMIAGHVINGQDLEAFETFNNM 295
Query: 272 GLAGAELTRSTFVSVIKLCATTKELRLARQLHSQVLKNGIDFDHNIRTGLMVAYSKCGKM 331
LAGA+ T +TF SVIK CA+ KEL L R LH + LK+G+ + N+ T LMVA +KC ++
Sbjct: 296 QLAGAKPTHATFASVIKSCASLKELGLVRVLHCKTLKSGLSTNQNVLTALMVALTKCKEI 355
Query: 332 EDASKIFSMMREMKDVVSWTAMISGHLQNGAIDLAVNFFCQMTREGVRPNGFTYSIILTA 391
+DA +FS+M ++ VVSWTAMISG+LQNG D AVN F M REGV+PN FTYS ILT
Sbjct: 356 DDAFSLFSLMHGVQSVVSWTAMISGYLQNGDTDQAVNLFSLMRREGVKPNHFTYSTILTV 415
Query: 392 QPAVSPFQVHAHIIKTNYEKSFSVGTALLNAYVKKGILDEAAKVFELIDEKDIVAWSAML 451
Q AV ++HA +IKTNYEKS SVGTALL+A+VK G + +A KVFELI+ KD++AWSAML
Sbjct: 416 QHAVFISEIHAEVIKTNYEKSSSVGTALLDAFVKIGNISDAVKVFELIETKDVIAWSAML 475
Query: 452 AGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFHACSIKAKL 511
AGYAQ G+TE A KI+ QLT EG+KPNEFTF S+INACTAP+A+VEQGKQFHA +IK +L
Sbjct: 476 AGYAQAGETEEAAKIFHQLTREGIKPNEFTFCSIINACTAPTASVEQGKQFHAYAIKLRL 535
Query: 512 NNALCVSSALVTMYSKKGNIESASEVFKRQRKRDLVSWNSMICGYAQHGHTKKALEVFKE 571
NNALCVSS+LVT+Y+K+GNIESA E+FKRQ++RDLVSWNSMI GYAQHG KKALEVF+E
Sbjct: 536 NNALCVSSSLVTLYAKRGNIESAHEIFKRQKERDLVSWNSMISGYAQHGQAKKALEVFEE 595
Query: 572 MRRQDLEFDGITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAG 631
M++++LE D ITFIGVI+AC HAGLV +GQ YF+IM+N+HHI PTMEHYSCM+DLYSRAG
Sbjct: 596 MQKRNLEVDAITFIGVISACAHAGLVGKGQNYFNIMINDHHINPTMEHYSCMIDLYSRAG 655
Query: 632 MLEKAMDIINRMPFAASATVWRTVLAACR--------------LISLQPHDSAIYVLLSN 677
ML KAMDIIN MPF +ATVWR VLAA R +ISL+P SA YVLLSN
Sbjct: 656 MLGKAMDIINGMPFPPAATVWRIVLAASRVHRNIELGKLAAEKIISLEPQHSAAYVLLSN 715
Query: 678 MYAATGHWQERARVRKLMNDRKVKKEAGYSWIEVKNKTYSFLAGDISHPQSNQIYSKLEE 737
+YAA G+W E+ VRKLM+ R+VKKE GYSWIEVKNKTYSFLAGD+SHP S+ IYSKL E
Sbjct: 716 IYAAAGNWHEKVNVRKLMDKRRVKKEPGYSWIEVKNKTYSFLAGDLSHPLSDHIYSKLSE 775
Query: 738 LSTRLKDAGYKPDTSYVLQDIDDEHKEAILSQHSERLAIAFGLVATPAGAPLQIVKNLRV 797
L+TRL+D GY+PDT+YV DI+DE KE ILS HSERLAIAFGL+AT PLQIVKNLRV
Sbjct: 776 LNTRLRDVGYQPDTNYVFHDIEDEQKETILSHHSERLAIAFGLIATLPEIPLQIVKNLRV 835
Query: 798 CGDCHTVIKLISKLERRDIVVRDTNRFHHFKEGLCSCGDYW 838
CGDCH+ IKL+S +E+R IVVRD+NRFHHFK GLCSCGDYW
Sbjct: 836 CGDCHSFIKLVSLVEKRYIVVRDSNRFHHFKGGLCSCGDYW 876
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15226200|ref|NP_180329.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75216862|sp|Q9ZUW3.1|PP172_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g27610 gi|3860271|gb|AAC73039.1| putative selenium-binding protein [Arabidopsis thaliana] gi|330252926|gb|AEC08020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1098 bits (2841), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 522/822 (63%), Positives = 640/822 (77%), Gaps = 15/822 (1%)
Query: 32 QSLFDRSPQRNFVEYNRLLFEYCRDSLHQEALNLFLGIRRLGLPLFGSTLSSVLKTCGCL 91
+LFD+SP R+ Y LLF + RD QEA LFL I RLG+ + S SSVLK L
Sbjct: 47 HNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLGMEMDCSIFSSVLKVSATL 106
Query: 92 FDHVFGRQVHCECVKSGFARDVNVSTSLVDLYMRTNNVEDGRRVFDDMNESNVVSWTSLL 151
D +FGRQ+HC+C+K GF DV+V TSLVD YM+ +N +DGR+VFD+M E NVV+WT+L+
Sbjct: 107 CDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVTWTTLI 166
Query: 152 SGYARNKMNDRVLELFHRMQVEGIKPNSFTFSTVLGVLADEGIVATAVQVHTMVIKNGGE 211
SGYARN MND VL LF RMQ EG +PNSFTF+ LGVLA+EG+ +QVHT+V+KNG +
Sbjct: 167 SGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLD 226
Query: 212 VVTSVCNALISMYLKSKMVRDARAVFDGMEDRDSITWNSMVAGYVTNELHMEAFETFNNM 271
V N+LI++YLK VR AR +FD E + +TWNSM++GY N L +EA F +M
Sbjct: 227 KTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSM 286
Query: 272 GLAGAELTRSTFVSVIKLCATTKELRLARQLHSQVLKNGIDFDHNIRTGLMVAYSKCGKM 331
L L+ S+F SVIKLCA KELR QLH V+K G FD NIRT LMVAYSKC M
Sbjct: 287 RLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCTAM 346
Query: 332 EDASKIFSMMREMKDVVSWTAMISGHLQNGAIDLAVNFFCQMTREGVRPNGFTYSIILTA 391
DA ++F + + +VVSWTAMISG LQN + AV+ F +M R+GVRPN FTYS+ILTA
Sbjct: 347 LDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTA 406
Query: 392 QPAVSPFQVHAHIIKTNYEKSFSVGTALLNAYVKKGILDEAAKVFELIDEKDIVAWSAML 451
P +SP +VHA ++KTNYE+S +VGTALL+AYVK G ++EAAKVF ID+KDIVAWSAML
Sbjct: 407 LPVISPSEVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAML 466
Query: 452 AGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFHACSIKAKL 511
AGYAQ G+TE A+K++ +LT G+KPNEFTFSS++N C A +A++ QGKQFH +IK++L
Sbjct: 467 AGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRL 526
Query: 512 NNALCVSSALVTMYSKKGNIESASEVFKRQRKRDLVSWNSMICGYAQHGHTKKALEVFKE 571
+++LCVSSAL+TMY+KKGNIESA EVFKRQR++DLVSWNSMI GYAQHG KAL+VFKE
Sbjct: 527 DSSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKE 586
Query: 572 MRRQDLEFDGITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAG 631
M+++ ++ DG+TFIGV ACTHAGLV+EG++YFDIMV + I PT EH SCMVDLYSRAG
Sbjct: 587 MKKRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAG 646
Query: 632 MLEKAMDIINRMPFAASATVWRTVLAACR--------------LISLQPHDSAIYVLLSN 677
LEKAM +I MP A +T+WRT+LAACR +I+++P DSA YVLLSN
Sbjct: 647 QLEKAMKVIENMPNPAGSTIWRTILAACRVHKKTELGRLAAEKIIAMKPEDSAAYVLLSN 706
Query: 678 MYAATGHWQERARVRKLMNDRKVKKEAGYSWIEVKNKTYSFLAGDISHPQSNQIYSKLEE 737
MYA +G WQERA+VRKLMN+R VKKE GYSWIEVKNKTYSFLAGD SHP +QIY KLE+
Sbjct: 707 MYAESGDWQERAKVRKLMNERNVKKEPGYSWIEVKNKTYSFLAGDRSHPLKDQIYMKLED 766
Query: 738 LSTRLKDAGYKPDTSYVLQDIDDEHKEAILSQHSERLAIAFGLVATPAGAPLQIVKNLRV 797
LSTRLKD GY+PDTSYVLQDIDDEHKEA+L+QHSERLAIAFGL+ATP G+PL I+KNLRV
Sbjct: 767 LSTRLKDLGYEPDTSYVLQDIDDEHKEAVLAQHSERLAIAFGLIATPKGSPLLIIKNLRV 826
Query: 798 CGDCHTVIKLISKLERRDIVVRDTNRFHHF-KEGLCSCGDYW 838
CGDCH VIKLI+K+E R+IVVRD+NRFHHF +G+CSCGD+W
Sbjct: 827 CGDCHLVIKLIAKIEEREIVVRDSNRFHHFSSDGVCSCGDFW 868
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297822535|ref|XP_002879150.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297324989|gb|EFH55409.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1090 bits (2820), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 518/822 (63%), Positives = 635/822 (77%), Gaps = 15/822 (1%)
Query: 32 QSLFDRSPQRNFVEYNRLLFEYCRDSLHQEALNLFLGIRRLGLPLFGSTLSSVLKTCGCL 91
+LFD+SP R+ Y LLF + RD QEA LFL I+ LG+ + S SSVLK L
Sbjct: 51 HNLFDKSPDRDRESYTSLLFGFSRDGRTQEATRLFLNIQHLGMEMDCSIFSSVLKVSATL 110
Query: 92 FDHVFGRQVHCECVKSGFARDVNVSTSLVDLYMRTNNVEDGRRVFDDMNESNVVSWTSLL 151
D +FGRQ+HC+C+K GF DV+V TSLVD YM+ +N +DGR VFD+M E NVV+WT+L+
Sbjct: 111 CDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRNVFDEMKERNVVTWTTLI 170
Query: 152 SGYARNKMNDRVLELFHRMQVEGIKPNSFTFSTVLGVLADEGIVATAVQVHTMVIKNGGE 211
SGYARN +N+ VL LF RMQ EG +PNSFTF+ LGVLA+EG+ +QVHT+V+KNG +
Sbjct: 171 SGYARNSLNEEVLTLFMRMQDEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLD 230
Query: 212 VVTSVCNALISMYLKSKMVRDARAVFDGMEDRDSITWNSMVAGYVTNELHMEAFETFNNM 271
V N+LI++YLK VR AR +FD E + +TWNSM++GY N L +EA F +M
Sbjct: 231 KTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSM 290
Query: 272 GLAGAELTRSTFVSVIKLCATTKELRLARQLHSQVLKNGIDFDHNIRTGLMVAYSKCGKM 331
L L+ S+F S+IKLCA KELR QLH V+K G FD NIRT LMVAYSKC M
Sbjct: 291 RLNHVRLSESSFASIIKLCANLKELRFTEQLHCSVVKYGFVFDQNIRTALMVAYSKCMAM 350
Query: 332 EDASKIFSMMREMKDVVSWTAMISGHLQNGAIDLAVNFFCQMTREGVRPNGFTYSIILTA 391
DA ++F + +VVSWTAMISG LQN + AV F +M R+GVRPN FTYS+ILTA
Sbjct: 351 LDALRLFKETGFLGNVVSWTAMISGFLQNDGKEEAVGLFSEMKRKGVRPNEFTYSVILTA 410
Query: 392 QPAVSPFQVHAHIIKTNYEKSFSVGTALLNAYVKKGILDEAAKVFELIDEKDIVAWSAML 451
P +SP +VHA ++KTNYE+S +VGTALL+AYVK G +DEAAKVF ID KDIVAWSAML
Sbjct: 411 LPVISPSEVHAQVVKTNYERSSTVGTALLDAYVKLGKVDEAAKVFSGIDNKDIVAWSAML 470
Query: 452 AGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFHACSIKAKL 511
AGYAQ G+TE A+KI+ +LT GVKPNEFTFSS++N C A +A++ QGKQFH +IK++L
Sbjct: 471 AGYAQAGETEAAIKIFSELTKGGVKPNEFTFSSILNVCAATTASMGQGKQFHGFAIKSRL 530
Query: 512 NNALCVSSALVTMYSKKGNIESASEVFKRQRKRDLVSWNSMICGYAQHGHTKKALEVFKE 571
+++LCVSSAL+TMY+KKG+IESA EVFKRQR++DLVSWNSMI GYAQHG KAL+VFKE
Sbjct: 531 DSSLCVSSALLTMYAKKGHIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKE 590
Query: 572 MRRQDLEFDGITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAG 631
M+++ ++ D +TFIGV ACTHAGLV+EG++YFDIMV + I PT EH SCMVDLYSRAG
Sbjct: 591 MKKRKVKMDSVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAG 650
Query: 632 MLEKAMDIINRMPFAASATVWRTVLAACR--------------LISLQPHDSAIYVLLSN 677
LEKAM +I+ MP A +T+WRT+LAACR +I++ P DSA YVLLSN
Sbjct: 651 QLEKAMKVIDNMPNLAGSTIWRTILAACRVHKKTELGRLAAEKIIAMIPEDSAAYVLLSN 710
Query: 678 MYAATGHWQERARVRKLMNDRKVKKEAGYSWIEVKNKTYSFLAGDISHPQSNQIYSKLEE 737
MYA +G WQERA+VRKLMN+R VKKE GYSWIEVKNKTY+FLAGD SHP +QIY KLE+
Sbjct: 711 MYAESGDWQERAKVRKLMNERNVKKEPGYSWIEVKNKTYAFLAGDRSHPLKDQIYMKLED 770
Query: 738 LSTRLKDAGYKPDTSYVLQDIDDEHKEAILSQHSERLAIAFGLVATPAGAPLQIVKNLRV 797
LSTRLKD GY+PDTSYVLQDIDDEHKEA+L+QHSERLAIAFGL+ATP G+PL I+KNLRV
Sbjct: 771 LSTRLKDLGYEPDTSYVLQDIDDEHKEAVLAQHSERLAIAFGLIATPKGSPLLIIKNLRV 830
Query: 798 CGDCHTVIKLISKLERRDIVVRDTNRFHHF-KEGLCSCGDYW 838
CGDCH VIKLI+K+E R+IVVRD+NRFHHF +G+CSCGD+W
Sbjct: 831 CGDCHVVIKLIAKIEEREIVVRDSNRFHHFSSDGVCSCGDFW 872
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357453021|ref|XP_003596787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355485835|gb|AES67038.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1088 bits (2815), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 528/823 (64%), Positives = 626/823 (76%), Gaps = 16/823 (1%)
Query: 32 QSLFDRSPQR--NFVEYNRLLFEYCRDSLHQEALNLFLGIRRLGLPLFGSTLSSVLKTCG 89
+LFD+ P R E+N+LLF Y RD +EALNLF+ + L STLS V C
Sbjct: 45 HNLFDKIPHRPTTLKEHNQLLFSYSRDKQTKEALNLFVSLLHSSLQPDESTLSCVFNICA 104
Query: 90 CLFDHVFGRQVHCECVKSGFARDVNVSTSLVDLYMRTNNVEDGRRVFDDMNESNVVSWTS 149
D GRQVHC+CVK G V+V TSLVD+YM+T NV DGRRVFD+M E NVVSWTS
Sbjct: 105 GSLDGKLGRQVHCQCVKFGLVDHVSVGTSLVDMYMKTENVNDGRRVFDEMGERNVVSWTS 164
Query: 150 LLSGYARNKMNDRVLELFHRMQVEGIKPNSFTFSTVLGVLADEGIVATAVQVHTMVIKNG 209
LL+GY+ N + V ELF +MQ EG+ PN +T STV+ L +EG+V +QVH MV+K+G
Sbjct: 165 LLAGYSWNGLYGYVWELFCQMQYEGVLPNRYTVSTVIAALVNEGVVGIGLQVHAMVVKHG 224
Query: 210 GEVVTSVCNALISMYLKSKMVRDARAVFDGMEDRDSITWNSMVAGYVTNELHMEAFETFN 269
E V N+LIS+Y + M+RDAR VFD ME RD +TWNSM+AGYV N +E FE FN
Sbjct: 225 FEEAIPVFNSLISLYSRLGMLRDARDVFDKMEIRDWVTWNSMIAGYVRNGQDLEVFEIFN 284
Query: 270 NMGLAGAELTRSTFVSVIKLCATTKELRLARQLHSQVLKNGIDFDHNIRTGLMVAYSKCG 329
M LAG + T TF SVIK CA+ +EL L + + + LK+G D + T LMVA SKC
Sbjct: 285 KMQLAGVKPTHMTFASVIKSCASLRELALVKLMQCKALKSGFTTDQIVITALMVALSKCK 344
Query: 330 KMEDASKIFSMMREMKDVVSWTAMISGHLQNGAIDLAVNFFCQMTREGVRPNGFTYSIIL 389
+M+DA +FS+M E K+VVSWTAMISG LQNG D AVN F QM REGV+PN FTYS IL
Sbjct: 345 EMDDALSLFSLMEEGKNVVSWTAMISGCLQNGGNDQAVNLFSQMRREGVKPNHFTYSAIL 404
Query: 390 TAQPAVSPFQVHAHIIKTNYEKSFSVGTALLNAYVKKGILDEAAKVFELIDEKDIVAWSA 449
T V ++HA +IKTNYE+S SVGTALL+AYVK G +A KVFE+I+ KD++AWSA
Sbjct: 405 TVHYPVFVSEMHAEVIKTNYERSSSVGTALLDAYVKLGNTIDAVKVFEIIEAKDLMAWSA 464
Query: 450 MLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFHACSIKA 509
MLAGYAQ G+TE A K++ QL EG+KPNEFTFSSVINAC +P+AA EQGKQFHA +IK
Sbjct: 465 MLAGYAQTGETEEAAKLFHQLIKEGIKPNEFTFSSVINACASPTAAAEQGKQFHAYAIKM 524
Query: 510 KLNNALCVSSALVTMYSKKGNIESASEVFKRQRKRDLVSWNSMICGYAQHGHTKKALEVF 569
+LNNALCVSSALVTMY+K+GNI+SA EVFKRQ++RDLVSWNSMI GY+QHG KKALEVF
Sbjct: 525 RLNNALCVSSALVTMYAKRGNIDSAHEVFKRQKERDLVSWNSMISGYSQHGQAKKALEVF 584
Query: 570 KEMRRQDLEFDGITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSR 629
EM++++++ D +TFIGVITACTHAGLV++GQ+YF+ M+N+HHI PTM+HYSCM+DLYSR
Sbjct: 585 DEMQKRNMDVDAVTFIGVITACTHAGLVEKGQKYFNSMINDHHINPTMKHYSCMIDLYSR 644
Query: 630 AGMLEKAMDIINRMPFAASATVWRTVLAACR--------------LISLQPHDSAIYVLL 675
AGMLEKAM IIN MPF ATVWRT+L A R LISLQP DSA YVLL
Sbjct: 645 AGMLEKAMGIINEMPFPPGATVWRTLLGAARVHRNVELGELAAEKLISLQPEDSAAYVLL 704
Query: 676 SNMYAATGHWQERARVRKLMNDRKVKKEAGYSWIEVKNKTYSFLAGDISHPQSNQIYSKL 735
SNMYAA G+WQER VRKLM+ RKVKKE GYSWIEVKNKTYSFLAGD++HP SNQIYSKL
Sbjct: 705 SNMYAAAGNWQERTNVRKLMDKRKVKKEPGYSWIEVKNKTYSFLAGDLTHPLSNQIYSKL 764
Query: 736 EELSTRLKDAGYKPDTSYVLQDIDDEHKEAILSQHSERLAIAFGLVATPAGAPLQIVKNL 795
ELS RLKDAGY+PDT V DI+DE KE ILS HSERLAIAFGL+ATP P+QIVKNL
Sbjct: 765 SELSIRLKDAGYQPDTKNVFHDIEDEQKETILSHHSERLAIAFGLIATPPEIPIQIVKNL 824
Query: 796 RVCGDCHTVIKLISKLERRDIVVRDTNRFHHFKEGLCSCGDYW 838
RVCGDCH KL+S +E+R IVVRD+NRFHHFK+GLCSCGDYW
Sbjct: 825 RVCGDCHNFTKLVSLVEQRYIVVRDSNRFHHFKDGLCSCGDYW 867
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449443608|ref|XP_004139569.1| PREDICTED: pentatricopeptide repeat-containing protein At2g27610-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1068 bits (2761), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 507/851 (59%), Positives = 642/851 (75%), Gaps = 21/851 (2%)
Query: 7 LKSLINPQTKQPPKSLRSPFYS-----KKDQSLFDRSPQRNFVEYNRLLFEYCRDSLHQE 61
+K ++P +SL PF S + LFD +P ++ YNRLLF++ R++ +E
Sbjct: 30 IKHFLHPHGFLYHQSL--PFISLPSRPRYAHQLFDETPLKDISHYNRLLFDFSRNNHDRE 87
Query: 62 ALNLFLGIRRLGLPLFGSTLSSVLKTCGCLFDHVFGRQVHCECVKSGFARDVNVSTSLVD 121
AL+LF + GL + G TLS LK CG LFD V GRQVHC+ +KSGF DV+V TSLVD
Sbjct: 88 ALHLFKDLHSSGLGVDGLTLSCALKVCGVLFDQVVGRQVHCQSLKSGFLEDVSVGTSLVD 147
Query: 122 LYMRTNNVEDGRRVFDDMNESNVVSWTSLLSGYARNKMNDRVLELFHRMQVEGIKPNSFT 181
+YM+T + EDGR +FD+M NVVSWTSLLSGYARN +ND V+ L ++MQ+EG+ PN FT
Sbjct: 148 MYMKTEDFEDGRGIFDEMGIKNVVSWTSLLSGYARNGLNDEVIHLINQMQMEGVNPNGFT 207
Query: 182 FSTVLGVLADEGIVATAVQVHTMVIKNGGEVVTSVCNALISMYLKSKMVRDARAVFDGME 241
F+TVLG LADE I+ VQVH M++KNG E T VCNALI MYLKS+MV DA AVFD M
Sbjct: 208 FATVLGALADESIIEGGVQVHAMIVKNGFEFTTFVCNALICMYLKSEMVGDAEAVFDSMV 267
Query: 242 DRDSITWNSMVAGYVTNELHMEAFETFNNMGLAGAELTRSTFVSVIKLCATTKELRLARQ 301
RDS+TWN M+ GY ++E F+ F+ M LAG +L+R+ F + +KLC+ +EL +Q
Sbjct: 268 VRDSVTWNIMIGGYAAIGFYLEGFQMFHRMRLAGVKLSRTVFCTALKLCSQQRELNFTKQ 327
Query: 302 LHSQVLKNGIDFDHNIRTGLMVAYSKCGKMEDASKIFSMMREMKDVVSWTAMISGHLQNG 361
LH V+KNG +F +IRT LMV YSKC +++A K+FSM +VV+WTAMI G +QN
Sbjct: 328 LHCGVVKNGYEFAQDIRTALMVTYSKCSSVDEAFKLFSMADAAHNVVTWTAMIGGFVQNN 387
Query: 362 AIDLAVNFFCQMTREGVRPNGFTYSIILTAQPAVSPFQVHAHIIKTNYEKSFSVGTALLN 421
+ AV+ FCQM+REGVRPN FTYS +L +P+ Q+HA IIK YEK SV TALL+
Sbjct: 388 NNEKAVDLFCQMSREGVRPNHFTYSTVLAGKPSSLLSQLHAQIIKAYYEKVPSVATALLD 447
Query: 422 AYVKKGILDEAAKVFELIDEKDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFT 481
AYVK G + E+A+VF I KDIVAWSAML G AQ D+E A++++ QL EGVKPNE+T
Sbjct: 448 AYVKTGNVVESARVFYSIPAKDIVAWSAMLTGLAQTRDSEKAMEVFIQLVKEGVKPNEYT 507
Query: 482 FSSVINACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQ 541
FSSVINAC++ +A VE GKQ HA ++K+ +NALCVSSAL+TMYSKKGNIESA +VF RQ
Sbjct: 508 FSSVINACSSSAATVEHGKQIHATAVKSGKSNALCVSSALLTMYSKKGNIESAEKVFTRQ 567
Query: 542 RKRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGITFIGVITACTHAGLVDEGQ 601
+RD+VSWNSMI GY QHG KKALEVF+ M+ Q L D +TFIGV+TACTHAGLV+EG+
Sbjct: 568 EERDIVSWNSMITGYGQHGDAKKALEVFQIMQNQGLPLDDVTFIGVLTACTHAGLVEEGE 627
Query: 602 QYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACR- 660
+YF+IM+ ++HI +EHYSCMVDLYSRAGM +KAMDIIN MPF AS T+WRT+LAACR
Sbjct: 628 KYFNIMIKDYHIDKKIEHYSCMVDLYSRAGMFDKAMDIINGMPFPASPTIWRTLLAACRV 687
Query: 661 -------------LISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMNDRKVKKEAGYS 707
L+SLQP+D+ YVLLSN++A G+W+E+A VRKLM++RKVKKEAG S
Sbjct: 688 HRNLELGKLAAEKLVSLQPNDAVGYVLLSNIHAVAGNWEEKAHVRKLMDERKVKKEAGCS 747
Query: 708 WIEVKNKTYSFLAGDISHPQSNQIYSKLEELSTRLKDAGYKPDTSYVLQDIDDEHKEAIL 767
WIE+KN+ +SFLAGD+SHP S+ +Y+KLEELS +LKD GY+PDT+YV D+++EHKEAIL
Sbjct: 748 WIEIKNRIFSFLAGDVSHPFSDLVYAKLEELSIKLKDMGYQPDTNYVFHDVEEEHKEAIL 807
Query: 768 SQHSERLAIAFGLVATPAGAPLQIVKNLRVCGDCHTVIKLISKLERRDIVVRDTNRFHHF 827
SQHSERLAIA+GL+A P GAP+QI KNLR+CGDCH VI+LIS +E R ++VRD+NRFHHF
Sbjct: 808 SQHSERLAIAYGLIALPPGAPIQIEKNLRICGDCHNVIELISLIEERTLIVRDSNRFHHF 867
Query: 828 KEGLCSCGDYW 838
K G+CSCG YW
Sbjct: 868 KGGVCSCGGYW 878
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449510623|ref|XP_004163716.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At2g27610-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1066 bits (2757), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 507/851 (59%), Positives = 640/851 (75%), Gaps = 21/851 (2%)
Query: 7 LKSLINPQTKQPPKSLRSPFYS-----KKDQSLFDRSPQRNFVEYNRLLFEYCRDSLHQE 61
+K ++P +SL PF S + LFD +P ++ YNRLLF++ R++ +E
Sbjct: 30 IKHFLHPHGFLYHQSL--PFISLPSRPRYAHQLFDETPLKDISHYNRLLFDFSRNNHDRE 87
Query: 62 ALNLFLGIRRLGLPLFGSTLSSVLKTCGCLFDHVFGRQVHCECVKSGFARDVNVSTSLVD 121
AL+LF + GL + G TLS LK CG LFD V GRQVHC+ +KSGF DV+V TSLVD
Sbjct: 88 ALHLFKDLHSSGLGVDGLTLSCALKVCGVLFDQVVGRQVHCQSLKSGFLEDVSVGTSLVD 147
Query: 122 LYMRTNNVEDGRRVFDDMNESNVVSWTSLLSGYARNKMNDRVLELFHRMQVEGIKPNSFT 181
+YM+T + EDGR +FD+M NVVSWTSLLSGYARN +ND V+ L ++MQ+EG+ PN FT
Sbjct: 148 MYMKTEDFEDGRGIFDEMGIKNVVSWTSLLSGYARNGLNDEVIHLINQMQMEGVNPNGFT 207
Query: 182 FSTVLGVLADEGIVATAVQVHTMVIKNGGEVVTSVCNALISMYLKSKMVRDARAVFDGME 241
F+TVLG LADE I+ VQVH M++KNG E T VCNALI MYLKS+MV DA AVFD M
Sbjct: 208 FATVLGALADESIIEGGVQVHAMIVKNGFEFTTFVCNALICMYLKSEMVGDAEAVFDSMV 267
Query: 242 DRDSITWNSMVAGYVTNELHMEAFETFNNMGLAGAELTRSTFVSVIKLCATTKELRLARQ 301
RDS+TWN M+ GY ++E F+ F+ M LAG +L+R+ F + +KLC+ +EL +Q
Sbjct: 268 VRDSVTWNIMIGGYAAIGFYLEGFQMFHRMRLAGVKLSRTVFCTALKLCSQQRELNFTKQ 327
Query: 302 LHSQVLKNGIDFDHNIRTGLMVAYSKCGKMEDASKIFSMMREMKDVVSWTAMISGHLQNG 361
LH V+KNG +F +IRT LMV YSKC +++A K+FSM +VV+WTAMI G +QN
Sbjct: 328 LHCGVVKNGYEFAQDIRTALMVTYSKCSSVDEAFKLFSMADAAHNVVTWTAMIGGFVQNN 387
Query: 362 AIDLAVNFFCQMTREGVRPNGFTYSIILTAQPAVSPFQVHAHIIKTNYEKSFSVGTALLN 421
AV+ FCQM+REGVRPN FTYS +L +P+ Q+HA IIK YEK SV TALL+
Sbjct: 388 NNKKAVDLFCQMSREGVRPNHFTYSTVLAGKPSSLLSQLHAQIIKAYYEKVPSVATALLD 447
Query: 422 AYVKKGILDEAAKVFELIDEKDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFT 481
AYVK G + E+A+VF I KDIVAWSAML G AQ D+E A++++ QL EGVKPNE+T
Sbjct: 448 AYVKTGNVVESARVFYSIPAKDIVAWSAMLTGLAQTRDSEKAMEVFIQLVKEGVKPNEYT 507
Query: 482 FSSVINACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQ 541
FSSVINAC++ +A VE GKQ HA ++K+ +NALCVSSAL+TMYSKKGNIESA +VF RQ
Sbjct: 508 FSSVINACSSSAATVEHGKQIHATAVKSGKSNALCVSSALLTMYSKKGNIESAEKVFTRQ 567
Query: 542 RKRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGITFIGVITACTHAGLVDEGQ 601
+RD+VSWNSMI GY QHG KKALEVF+ M+ Q L D +TFIGV+TACTHAGLV+EG+
Sbjct: 568 EERDIVSWNSMITGYGQHGDAKKALEVFQIMQNQGLPLDDVTFIGVLTACTHAGLVEEGE 627
Query: 602 QYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACR- 660
+YF+IM+ ++HI EHYSCMVDLYSRAGM +KAMDIIN MPF AS T+WRT+LAACR
Sbjct: 628 KYFNIMIKDYHIDKKXEHYSCMVDLYSRAGMFDKAMDIINGMPFPASPTIWRTLLAACRV 687
Query: 661 -------------LISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMNDRKVKKEAGYS 707
L+SLQP+D+ YVLLSN++A G+W+E+A VRKLM++RKVKKEAG S
Sbjct: 688 HRNLELGKLAAEKLVSLQPNDAVGYVLLSNIHAVAGNWEEKAHVRKLMDERKVKKEAGCS 747
Query: 708 WIEVKNKTYSFLAGDISHPQSNQIYSKLEELSTRLKDAGYKPDTSYVLQDIDDEHKEAIL 767
WIE+KN+ +SFLAGD+SHP S+ +Y+KLEELS +LKD GY+PDT+YV D+++EHKEAIL
Sbjct: 748 WIEIKNRIFSFLAGDVSHPFSDLVYAKLEELSIKLKDMGYQPDTNYVFHDVEEEHKEAIL 807
Query: 768 SQHSERLAIAFGLVATPAGAPLQIVKNLRVCGDCHTVIKLISKLERRDIVVRDTNRFHHF 827
SQHSERLAIA+GL+A P GAP+QI KNLR+CGDCH VI+LIS +E R ++VRD+NRFHHF
Sbjct: 808 SQHSERLAIAYGLIALPPGAPIQIEKNLRICGDCHNVIELISLIEERTLIVRDSNRFHHF 867
Query: 828 KEGLCSCGDYW 838
K G+CSCG YW
Sbjct: 868 KGGVCSCGGYW 878
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|125552577|gb|EAY98286.1| hypothetical protein OsI_20194 [Oryza sativa Indica Group] | Back alignment and taxonomy information |
|---|
Score = 924 bits (2387), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 447/820 (54%), Positives = 588/820 (71%), Gaps = 16/820 (1%)
Query: 35 FDRSPQRNF-VEYNRLLFEYCRDSLHQEALNLFLGIRRLGLPLFGSTLSSVLKTCGCLFD 93
D P+R+ V NR+LF+Y R + E L+ F RR G+ + +TLS VLK C + D
Sbjct: 55 LDEIPRRDAAVGANRVLFDYARRGMVPEVLDQFSVARRGGVLVDSATLSCVLKACRSVPD 114
Query: 94 HVFGRQVHCECVKSGFAR-DVNVSTSLVDLYMRTNNVEDGRRVFDDMNESNVVSWTSLLS 152
V G Q+HC CVK G R +V+ TSLVD+YM+ +V +G VF+ M + NVV+WTSLL+
Sbjct: 115 RVLGEQLHCLCVKCGHDRGEVSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWTSLLT 174
Query: 153 GYARNKMNDRVLELFHRMQVEGIKPNSFTFSTVLGVLADEGIVATAVQVHTMVIKNGGEV 212
G A +M+ V+ LF RM+ EGI PN FTF++VL +A +G + +VH +K G
Sbjct: 175 GCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVASQGALDLGQRVHAQSVKFGCRS 234
Query: 213 VTSVCNALISMYLKSKMVRDARAVFDGMEDRDSITWNSMVAGYVTNELHMEAFETFNNMG 272
VCN+L++MY K +V DA++VF+ ME RD ++WN+++AG NE +EA + F+
Sbjct: 235 SVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWNTLMAGLQLNECELEALQLFHESR 294
Query: 273 LAGAELTRSTFVSVIKLCATTKELRLARQLHSQVLKNGIDFDHNIRTGLMVAYSKCGKME 332
++T+ST+ +VIKLCA K+L LARQLHS VLK+G N+ T L AYSKCG++
Sbjct: 295 ATMGKMTQSTYATVIKLCANLKQLALARQLHSCVLKHGFHLTGNVMTALADAYSKCGELA 354
Query: 333 DASKIFSMMREMKDVVSWTAMISGHLQNGAIDLAVNFFCQMTREGVRPNGFTYSIILTAQ 392
DA IFSM ++VVSWTA+ISG +QNG I LAV F +M + V PN FTYS +L A
Sbjct: 355 DALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLAVVLFSRMREDRVMPNEFTYSAMLKAS 414
Query: 393 PAVSPFQVHAHIIKTNYEKSFSVGTALLNAYVKKGILDEAAKVFELIDEKDIVAWSAMLA 452
++ P Q+HA +IKTNY+ SVGTALL +Y K G ++A +F++I++KD+VAWSAML+
Sbjct: 415 LSILPPQIHAQVIKTNYQHIPSVGTALLASYSKFGSTEDALSIFKMIEQKDVVAWSAMLS 474
Query: 453 GYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFHACSIKAKLN 512
+AQ GD EGA ++ ++ +G+KPNEFT SSVI+AC PSA V+QG+QFHA SIK + +
Sbjct: 475 CHAQAGDCEGATYLFNKMAIQGIKPNEFTISSVIDACACPSAGVDQGRQFHAISIKYRYH 534
Query: 513 NALCVSSALVTMYSKKGNIESASEVFKRQRKRDLVSWNSMICGYAQHGHTKKALEVFKEM 572
+A+CVSSALV+MYS+KGNI+SA VF+RQ RDLVSWNSMI GYAQHG++ KA+E F++M
Sbjct: 535 DAICVSSALVSMYSRKGNIDSAQIVFERQTDRDLVSWNSMISGYAQHGYSMKAIETFRQM 594
Query: 573 RRQDLEFDGITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGM 632
++ DG+TF+ VI CTH GLV EGQQYFD MV +H I PTMEHY+CMVDLYSRAG
Sbjct: 595 EASGIQMDGVTFLAVIMGCTHNGLVVEGQQYFDSMVRDHKINPTMEHYACMVDLYSRAGK 654
Query: 633 LEKAMDIINRMPFAASATVWRTVLAACR--------------LISLQPHDSAIYVLLSNM 678
L++ M +I MPF A A VWRT+L ACR L+SL+PHDS+ YVLLSN+
Sbjct: 655 LDETMSLIRDMPFPAGAMVWRTLLGACRVHKNVELGKFSADKLLSLEPHDSSTYVLLSNI 714
Query: 679 YAATGHWQERARVRKLMNDRKVKKEAGYSWIEVKNKTYSFLAGDISHPQSNQIYSKLEEL 738
YAA G W+ER VRKLM+ RKVKKEAG SWI++KNK +SF+A D SHP S+QIY KL+ +
Sbjct: 715 YAAAGKWKERDEVRKLMDYRKVKKEAGCSWIQIKNKVHSFIAFDKSHPMSDQIYKKLKVI 774
Query: 739 STRLKDAGYKPDTSYVLQDIDDEHKEAILSQHSERLAIAFGLVATPAGAPLQIVKNLRVC 798
TRLK GY P+TS+VL DI ++ KEA+L HSERLA+AFGL+ATP G PLQIVKNLRVC
Sbjct: 775 ITRLKQDGYSPNTSFVLHDIAEDQKEAMLVAHSERLALAFGLIATPPGTPLQIVKNLRVC 834
Query: 799 GDCHTVIKLISKLERRDIVVRDTNRFHHFKEGLCSCGDYW 838
GDCH V+K++S +E R+I++RD +RFHHF G CSCGD+W
Sbjct: 835 GDCHMVMKMVSMIEDREIIMRDCSRFHHFNGGACSCGDFW 874
|
Source: Oryza sativa Indica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|115464255|ref|NP_001055727.1| Os05g0455900 [Oryza sativa Japonica Group] gi|53749358|gb|AAU90217.1| unknow protein [Oryza sativa Japonica Group] gi|113579278|dbj|BAF17641.1| Os05g0455900 [Oryza sativa Japonica Group] gi|222631826|gb|EEE63958.1| hypothetical protein OsJ_18783 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 920 bits (2378), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 446/820 (54%), Positives = 587/820 (71%), Gaps = 16/820 (1%)
Query: 35 FDRSPQRNF-VEYNRLLFEYCRDSLHQEALNLFLGIRRLGLPLFGSTLSSVLKTCGCLFD 93
D P+R+ V NR+LF+Y R + E L+ F RR G+ + +TLS VLK C + D
Sbjct: 55 LDEIPRRDAAVGANRVLFDYARRGMVLEVLDQFSVARRGGVLVDSATLSCVLKACRSVPD 114
Query: 94 HVFGRQVHCECVKSGFAR-DVNVSTSLVDLYMRTNNVEDGRRVFDDMNESNVVSWTSLLS 152
V G Q+HC CVK G R +V+ TSLVD+YM+ +V +G VF+ M + NVV+WTSLL+
Sbjct: 115 RVLGEQLHCLCVKCGHDRGEVSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWTSLLT 174
Query: 153 GYARNKMNDRVLELFHRMQVEGIKPNSFTFSTVLGVLADEGIVATAVQVHTMVIKNGGEV 212
G A +M+ V+ LF RM+ EGI PN FTF++VL +A +G + +VH +K G
Sbjct: 175 GCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVASQGALDLGQRVHAQSVKFGCRS 234
Query: 213 VTSVCNALISMYLKSKMVRDARAVFDGMEDRDSITWNSMVAGYVTNELHMEAFETFNNMG 272
VCN+L++MY K +V DA++VF+ ME RD ++WN+++AG NE +EA + F+
Sbjct: 235 SVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWNTLMAGLQLNECELEALQLFHESR 294
Query: 273 LAGAELTRSTFVSVIKLCATTKELRLARQLHSQVLKNGIDFDHNIRTGLMVAYSKCGKME 332
++T+ST+ +VIKLCA K+L LARQLHS VLK+G N+ T L AYSKCG++
Sbjct: 295 ATMGKMTQSTYATVIKLCANLKQLALARQLHSCVLKHGFHLTGNVMTALADAYSKCGELA 354
Query: 333 DASKIFSMMREMKDVVSWTAMISGHLQNGAIDLAVNFFCQMTREGVRPNGFTYSIILTAQ 392
DA IFSM ++VVSWTA+ISG +QNG I LAV F +M + V PN FTYS +L A
Sbjct: 355 DALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLAVVLFSRMREDRVMPNEFTYSAMLKAS 414
Query: 393 PAVSPFQVHAHIIKTNYEKSFSVGTALLNAYVKKGILDEAAKVFELIDEKDIVAWSAMLA 452
++ P Q+HA +IKTNY+ VGTALL +Y K G ++A +F++I++KD+VAWSAML+
Sbjct: 415 LSILPPQIHAQVIKTNYQHIPFVGTALLASYSKFGSTEDALSIFKMIEQKDVVAWSAMLS 474
Query: 453 GYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFHACSIKAKLN 512
+AQ GD EGA ++ ++ +G+KPNEFT SSVI+AC PSA V+QG+QFHA SIK + +
Sbjct: 475 CHAQAGDCEGATYLFNKMAIQGIKPNEFTISSVIDACACPSAGVDQGRQFHAISIKYRYH 534
Query: 513 NALCVSSALVTMYSKKGNIESASEVFKRQRKRDLVSWNSMICGYAQHGHTKKALEVFKEM 572
+A+CVSSALV+MYS+KGNI+SA VF+RQ RDLVSWNSMI GYAQHG++ KA+E F++M
Sbjct: 535 DAICVSSALVSMYSRKGNIDSAQIVFERQTDRDLVSWNSMISGYAQHGYSMKAIETFRQM 594
Query: 573 RRQDLEFDGITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGM 632
++ DG+TF+ VI CTH GLV EGQQYFD MV +H I PTMEHY+CMVDLYSRAG
Sbjct: 595 EASGIQMDGVTFLAVIMGCTHNGLVVEGQQYFDSMVRDHKINPTMEHYACMVDLYSRAGK 654
Query: 633 LEKAMDIINRMPFAASATVWRTVLAACR--------------LISLQPHDSAIYVLLSNM 678
L++ M +I MPF A A VWRT+L ACR L+SL+PHDS+ YVLLSN+
Sbjct: 655 LDETMSLIRDMPFPAGAMVWRTLLGACRVHKNVELGKFSADKLLSLEPHDSSTYVLLSNI 714
Query: 679 YAATGHWQERARVRKLMNDRKVKKEAGYSWIEVKNKTYSFLAGDISHPQSNQIYSKLEEL 738
YAA G W+ER VRKLM+ RKVKKEAG SWI++KNK +SF+A D SHP S+QIY KL+ +
Sbjct: 715 YAAAGKWKERDEVRKLMDYRKVKKEAGCSWIQIKNKVHSFIAFDKSHPMSDQIYKKLKVI 774
Query: 739 STRLKDAGYKPDTSYVLQDIDDEHKEAILSQHSERLAIAFGLVATPAGAPLQIVKNLRVC 798
TRLK GY P+TS+VL DI ++ KEA+L HSERLA+AFGL+ATP G PLQIVKNLRVC
Sbjct: 775 ITRLKQDGYSPNTSFVLHDIAEDQKEAMLVAHSERLALAFGLIATPPGTPLQIVKNLRVC 834
Query: 799 GDCHTVIKLISKLERRDIVVRDTNRFHHFKEGLCSCGDYW 838
GDCH V+K++S +E R+I++RD +RFHHF G CSCGD+W
Sbjct: 835 GDCHMVMKMVSMIEDREIIMRDCSRFHHFNGGACSCGDFW 874
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|242090705|ref|XP_002441185.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor] gi|241946470|gb|EES19615.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor] | Back alignment and taxonomy information |
|---|
Score = 913 bits (2359), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 442/820 (53%), Positives = 592/820 (72%), Gaps = 18/820 (2%)
Query: 35 FDRSPQRNFVEYNRLLFEYCRDSLHQEALNLFLGIRRL-GLPLFGSTLSSVLKTCGCLFD 93
FD P RN +++ LF++ R +AL+ FL + R G + G L VLK CG + D
Sbjct: 61 FDEIPHRNTLDHA--LFDHARRGSVHQALDHFLDVHRCHGGRVGGGALVGVLKVCGSVPD 118
Query: 94 HVFGRQVHCECVKSGFAR-DVNVSTSLVDLYMRTNNVEDGRRVFDDMNESNVVSWTSLLS 152
V G+Q+H C++ G R DV V TSLVD+YM+ ++V DGR+VF+ M + NVV+WTSLL+
Sbjct: 119 RVLGKQLHGLCIRCGHDRGDVGVGTSLVDMYMKWHSVVDGRKVFEAMPKRNVVTWTSLLT 178
Query: 153 GYARNKMNDRVLELFHRMQVEGIKPNSFTFSTVLGVLADEGIVATAVQVHTMVIKNGGEV 212
GY ++ V+ELF RM+ EG+ PNS TF++VL V+A +G+V +VH +K G
Sbjct: 179 GYIQDGALSDVMELFFRMRAEGVWPNSVTFASVLSVVASQGMVDLGRRVHAQSVKFGCCS 238
Query: 213 VTSVCNALISMYLKSKMVRDARAVFDGMEDRDSITWNSMVAGYVTNELHMEAFETFNNMG 272
VCN+L++MY K +V +AR VF GME RD ++WN+++AG V N +EA + F++
Sbjct: 239 TVFVCNSLMNMYAKCGLVEEARVVFCGMETRDMVSWNTLMAGLVLNGHDLEALQLFHDSR 298
Query: 273 LAGAELTRSTFVSVIKLCATTKELRLARQLHSQVLKNGIDFDHNIRTGLMVAYSKCGKME 332
+ LT+ST+ +VIKLCA K+L LARQLHS VLK G N+ T LM AYSK G++
Sbjct: 299 SSITMLTQSTYATVIKLCANIKQLGLARQLHSSVLKRGFHSYGNVMTALMDAYSKAGQLG 358
Query: 333 DASKIFSMMREMKDVVSWTAMISGHLQNGAIDLAVNFFCQMTREGVRPNGFTYSIILTAQ 392
+A IF +M ++VVSWTAMI+G +QNG + LA F +M +GV PN FTYS ILTA
Sbjct: 359 NALDIFLLMSGSQNVVSWTAMINGCIQNGDVPLAAALFSRMREDGVAPNDFTYSTILTAS 418
Query: 393 PAVSPFQVHAHIIKTNYEKSFSVGTALLNAYVKKGILDEAAKVFELIDEKDIVAWSAMLA 452
A P Q+HA +IKTNYE + VGTALL +Y K +EA +F++ID+KD+V+WSAML
Sbjct: 419 VASLPPQIHAQVIKTNYECTSIVGTALLASYSKLCNTEEALSIFKMIDQKDVVSWSAMLT 478
Query: 453 GYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFHACSIKAKLN 512
YAQ GD++GA I+ ++T G+KPNEFT SSVI+AC +P+A V+ G+QFHA SIK + +
Sbjct: 479 CYAQAGDSDGATNIFIKMTMHGLKPNEFTISSVIDACASPTAGVDLGRQFHAISIKHRCH 538
Query: 513 NALCVSSALVTMYSKKGNIESASEVFKRQRKRDLVSWNSMICGYAQHGHTKKALEVFKEM 572
+ALCVSSALV+MY++KG+IESA +F+RQ RDLVSWNSM+ GYAQHG+++KAL+VF++M
Sbjct: 539 DALCVSSALVSMYARKGSIESAQCIFERQTDRDLVSWNSMLSGYAQHGYSQKALDVFRQM 598
Query: 573 RRQDLEFDGITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGM 632
+ +E DG+TF+ VI C HAGLV+EGQ+YFD M ++ I PTMEHY+CMVDLYSRAG
Sbjct: 599 EAEGIEMDGVTFLSVIMGCAHAGLVEEGQRYFDSMARDYGITPTMEHYACMVDLYSRAGK 658
Query: 633 LEKAMDIINRMPFAASATVWRTVLAAC--------------RLISLQPHDSAIYVLLSNM 678
L++AM +I M F A VWRT+L AC +L+SL+P DSA YVLLSN+
Sbjct: 659 LDEAMSLIEGMSFPAGPMVWRTLLGACKVHKNVELGKLAAEKLLSLEPFDSATYVLLSNI 718
Query: 679 YAATGHWQERARVRKLMNDRKVKKEAGYSWIEVKNKTYSFLAGDISHPQSNQIYSKLEEL 738
Y+A G W+E+ VRKLM+ +KVKKEAG SWI++KNK +SF+A D SHP S QIY+KL +
Sbjct: 719 YSAAGKWKEKDEVRKLMDTKKVKKEAGCSWIQIKNKVHSFIASDKSHPLSEQIYAKLRAM 778
Query: 739 STRLKDAGYKPDTSYVLQDIDDEHKEAILSQHSERLAIAFGLVATPAGAPLQIVKNLRVC 798
+T+LK GY PDTS+ L ++ +E KEA+L+ HSERLA+AFGL+ATP GAPL I KNLRVC
Sbjct: 779 TTKLKQEGYCPDTSFALHEVAEEQKEAMLAMHSERLALAFGLIATPPGAPLHIFKNLRVC 838
Query: 799 GDCHTVIKLISKLERRDIVVRDTNRFHHFKEGLCSCGDYW 838
GDCHTVIK++SK+E R+IV+RD +RFHHF G+CSCGD+W
Sbjct: 839 GDCHTVIKMVSKIEDREIVMRDCSRFHHFNSGVCSCGDFW 878
|
Source: Sorghum bicolor Species: Sorghum bicolor Genus: Sorghum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 838 | ||||||
| TAIR|locus:2038603 | 868 | AT2G27610 "AT2G27610" [Arabido | 0.961 | 0.928 | 0.635 | 1.1e-284 | |
| TAIR|locus:2178188 | 995 | MEF7 "AT5G09950" [Arabidopsis | 0.733 | 0.618 | 0.332 | 2.2e-163 | |
| TAIR|locus:2096414 | 882 | AT3G03580 [Arabidopsis thalian | 0.957 | 0.909 | 0.372 | 2.2e-146 | |
| TAIR|locus:2125899 | 990 | AT4G33170 [Arabidopsis thalian | 0.832 | 0.705 | 0.386 | 2.1e-139 | |
| TAIR|locus:2131939 | 792 | MEF29 "AT4G30700" [Arabidopsis | 0.879 | 0.930 | 0.360 | 1.1e-137 | |
| TAIR|locus:2202074 | 809 | CRR22 "CHLORORESPIRATORY REDUC | 0.880 | 0.912 | 0.363 | 9.1e-132 | |
| TAIR|locus:2205425 | 743 | AT1G68930 "AT1G68930" [Arabido | 0.630 | 0.710 | 0.415 | 1.8e-131 | |
| TAIR|locus:2183931 | 822 | AT5G13230 [Arabidopsis thalian | 0.941 | 0.959 | 0.351 | 6.4e-131 | |
| TAIR|locus:2103483 | 890 | OTP84 "ORGANELLE TRANSCRIPT PR | 0.445 | 0.419 | 0.403 | 6.2e-129 | |
| TAIR|locus:2119440 | 1064 | AT4G13650 [Arabidopsis thalian | 0.958 | 0.754 | 0.328 | 4.6e-128 |
| TAIR|locus:2038603 AT2G27610 "AT2G27610" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2715 (960.8 bits), Expect = 1.1e-284, Sum P(2) = 1.1e-284
Identities = 522/821 (63%), Positives = 640/821 (77%)
Query: 33 SLFDRSPQRNFVEYNRLLFEYCRDSLHQEALNLFLGIRRLGLPLFGSTLSSVLKTCGCLF 92
+LFD+SP R+ Y LLF + RD QEA LFL I RLG+ + S SSVLK L
Sbjct: 48 NLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLGMEMDCSIFSSVLKVSATLC 107
Query: 93 DHVFGRQVHCECVKSGFARDVNVSTSLVDLYMRTNNVEDGRRVFDDMNESNVVSWTSLLS 152
D +FGRQ+HC+C+K GF DV+V TSLVD YM+ +N +DGR+VFD+M E NVV+WT+L+S
Sbjct: 108 DELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVTWTTLIS 167
Query: 153 GYARNKMNDRVLELFHRMQVEGIKPNSFTFSTVLGVLADEGIVATAVQVHTMVIKNGGEV 212
GYARN MND VL LF RMQ EG +PNSFTF+ LGVLA+EG+ +QVHT+V+KNG +
Sbjct: 168 GYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDK 227
Query: 213 VTSVCNALISMYLKSKMVRDARAVFDGMEDRDSITWNSMVAGYVTNELHMEAFETFNNMG 272
V N+LI++YLK VR AR +FD E + +TWNSM++GY N L +EA F +M
Sbjct: 228 TIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMR 287
Query: 273 LAGAELTRSTFVSVIKLCATTKELRLARQLHSQVLKNGIDFDHNIRTGLMVAYSKCGKME 332
L L+ S+F SVIKLCA KELR QLH V+K G FD NIRT LMVAYSKC M
Sbjct: 288 LNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCTAML 347
Query: 333 DASKIFSMMREMKDVVSWTAMISGHLQNGAIDLAVNFFCQMTREGVRPNGFTYSIILTAQ 392
DA ++F + + +VVSWTAMISG LQN + AV+ F +M R+GVRPN FTYS+ILTA
Sbjct: 348 DALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTAL 407
Query: 393 PAVSPFQVHAHIIKTNYEKSFSVGTALLNAYVKKGILDEAAKVFELIDEKDIVAWSAMLA 452
P +SP +VHA ++KTNYE+S +VGTALL+AYVK G ++EAAKVF ID+KDIVAWSAMLA
Sbjct: 408 PVISPSEVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLA 467
Query: 453 GYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFHACSIKAKLN 512
GYAQ G+TE A+K++ +LT G+KPNEFTFSS++N C A +A++ QGKQFH +IK++L+
Sbjct: 468 GYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLD 527
Query: 513 NALCVSSALVTMYSKKGNIESASEVFKRQRKRDLVSWNSMICGYAQHGHTKKALEVFKEM 572
++LCVSSAL+TMY+KKGNIESA EVFKRQR++DLVSWNSMI GYAQHG KAL+VFKEM
Sbjct: 528 SSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEM 587
Query: 573 RRQDLEFDGITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGM 632
+++ ++ DG+TFIGV ACTHAGLV+EG++YFDIMV + I PT EH SCMVDLYSRAG
Sbjct: 588 KKRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQ 647
Query: 633 LEKAMDIINRMPFAASATVWRTVLAACR--------------LISLQPHDSAIYVLLSNM 678
LEKAM +I MP A +T+WRT+LAACR +I+++P DSA YVLLSNM
Sbjct: 648 LEKAMKVIENMPNPAGSTIWRTILAACRVHKKTELGRLAAEKIIAMKPEDSAAYVLLSNM 707
Query: 679 YAATGHWQERARVRKLMNDRKVKKEAGYSWIEVKNKTYSFLAGDISHPQSNQIYSKLEEL 738
YA +G WQERA+VRKLMN+R VKKE GYSWIEVKNKTYSFLAGD SHP +QIY KLE+L
Sbjct: 708 YAESGDWQERAKVRKLMNERNVKKEPGYSWIEVKNKTYSFLAGDRSHPLKDQIYMKLEDL 767
Query: 739 STRLKDAGYKPDTSYVLQDIDDEHKEAILSQHSERLAIAFGLVATPAGAPLQIVKNLRVC 798
STRLKD GY+PDTSYVLQDIDDEHKEA+L+QHSERLAIAFGL+ATP G+PL I+KNLRVC
Sbjct: 768 STRLKDLGYEPDTSYVLQDIDDEHKEAVLAQHSERLAIAFGLIATPKGSPLLIIKNLRVC 827
Query: 799 GDCHTVIKLISKLERRDIVVRDTNRFHHFK-EGLCSCGDYW 838
GDCH VIKLI+K+E R+IVVRD+NRFHHF +G+CSCGD+W
Sbjct: 828 GDCHLVIKLIAKIEEREIVVRDSNRFHHFSSDGVCSCGDFW 868
|
|
| TAIR|locus:2178188 MEF7 "AT5G09950" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 869 (311.0 bits), Expect = 2.2e-163, Sum P(2) = 2.2e-163
Identities = 211/635 (33%), Positives = 337/635 (53%)
Query: 41 RNFVEYNRLLFEYCRDSLHQEALNLFLGIRRLGLPLFGSTLSSVLKT-CGCLFDHV-FGR 98
+N V +N ++ Y + + A +F ++ G T S++ T C V
Sbjct: 169 KNSVSWNSIISVYSQAGDQRSAFRIFSSMQYDGSRPTEYTFGSLVTTACSLTEPDVRLLE 228
Query: 99 QVHCECVKSGFARDVNVSTSLVDLYMRTNNVEDGRRVFDDMNESNVVSWTSLLSGYARNK 158
Q+ C KSG D+ V + LV + ++ ++ R+VF+ M N V+ L+ G R K
Sbjct: 229 QIMCTIQKSGLLTDLFVGSGLVSAFAKSGSLSYARKVFNQMETRNAVTLNGLMVGLVRQK 288
Query: 159 MNDRVLELFHRMQ-VEGIKPNSFTF---STVLGVLADEGIVATAVQVHTMVIKNG-GEVV 213
+ +LF M + + P S+ S LA+E + +VH VI G + +
Sbjct: 289 WGEEATKLFMDMNSMIDVSPESYVILLSSFPEYSLAEEVGLKKGREVHGHVITTGLVDFM 348
Query: 214 TSVCNALISMYLKSKMVRDARAVFDGMEDRDSITWNSMVAGYVTNELHMEAFETFNNMGL 273
+ N L++MY K + DAR VF M D+DS++WNSM+ G N +EA E + +M
Sbjct: 349 VGIGNGLVNMYAKCGSIADARRVFYFMTDKDSVSWNSMITGLDQNGCFIEAVERYKSMRR 408
Query: 274 AGAELTRSTFVSVIKLCATTKELRLARQLHSQVLKNGIDFDHNIRTGLMVAYSKCGKMED 333
T +S + CA+ K +L +Q+H + LK GID + ++ LM Y++ G + +
Sbjct: 409 HDILPGSFTLISSLSSCASLKWAKLGQQIHGESLKLGIDLNVSVSNALMTLYAETGYLNE 468
Query: 334 ASKIFSMMREMKDVVSWTAMISGHLQNGAIDL--AVNFFCQMTREGVRPNGFTYSIILTA 391
KIFS M E D VSW ++I G L L AV F R G + N T+S +L+A
Sbjct: 469 CRKIFSSMPE-HDQVSWNSII-GALARSERSLPEAVVCFLNAQRAGQKLNRITFSSVLSA 526
Query: 392 QPAVSPF-----QVHAHIIKTNYEKSFSVGTALLNAYVKKGILDEAAKVFE-LIDEKDIV 445
++S F Q+H +K N + AL+ Y K G +D K+F + + +D V
Sbjct: 527 VSSLS-FGELGKQIHGLALKNNIADEATTENALIACYGKCGEMDGCEKIFSRMAERRDNV 585
Query: 446 AWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFHAC 505
W++M++GY A+ + + G + + F +++V++A A A +E+G + HAC
Sbjct: 586 TWNSMISGYIHNELLAKALDLVWFMLQTGQRLDSFMYATVLSAF-ASVATLERGMEVHAC 644
Query: 506 SIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQRKRDLVSWNSMICGYAQHGHTKKA 565
S++A L + + V SALV MYSK G ++ A F R+ SWNSMI GYA+HG ++A
Sbjct: 645 SVRACLESDVVVGSALVDMYSKCGRLDYALRFFNTMPVRNSYSWNSMISGYARHGQGEEA 704
Query: 566 LEVFKEMRRQ-DLEFDGITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMV 624
L++F+ M+ D +TF+GV++AC+HAGL++EG ++F+ M + + + P +EH+SCM
Sbjct: 705 LKLFETMKLDGQTPPDHVTFVGVLSACSHAGLLEEGFKHFESMSDSYGLAPRIEHFSCMA 764
Query: 625 DLYSRAGMLEKAMDIINRMPFAASATVWRTVLAAC 659
D+ RAG L+K D I +MP + +WRTVL AC
Sbjct: 765 DVLGRAGELDKLEDFIEKMPMKPNVLIWRTVLGAC 799
|
|
| TAIR|locus:2096414 AT3G03580 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1430 (508.4 bits), Expect = 2.2e-146, P = 2.2e-146
Identities = 308/827 (37%), Positives = 472/827 (57%)
Query: 33 SLFDR-SPQRNFVEYNRLLFEYCRDSLHQEALNLFLGIRRLGLPLFGSTLSSVLKTCGCL 91
S+F R SP +N +N ++ + ++ L EAL + +R + T SV+K C L
Sbjct: 60 SVFRRVSPAKNVYLWNSIIRAFSKNGLFPEALEFYGKLRESKVSPDKYTFPSVIKACAGL 119
Query: 92 FDHVFGRQVHCECVKSGFARDVNVSTSLVDLYMRTNNVEDGRRVFDDMNESNVVSWTSLL 151
FD G V+ + + GF D+ V +LVD+Y R + R+VFD+M ++VSW SL+
Sbjct: 120 FDAEMGDLVYEQILDMGFESDLFVGNALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLI 179
Query: 152 SGYARNKMNDRVLELFHRMQVEGIKPNSFTFSTVLGVLADEGIVATAVQVHTMVIKNGGE 211
SGY+ + + LE++H ++ I P+SFT S+VL + +V +H +K+G
Sbjct: 180 SGYSSHGYYEEALEIYHELKNSWIVPDSFTVSSVLPAFGNLLVVKQGQGLHGFALKSGVN 239
Query: 212 VVTSVCNALISMYLKSKMVRDARAVFDGMEDRDSITWNSMVAGYVTNELHMEAFETF-NN 270
V V N L++MYLK + DAR VFD M+ RDS+++N+M+ GY+ E+ E+ F N
Sbjct: 240 SVVVVNNGLVAMYLKFRRPTDARRVFDEMDVRDSVSYNTMICGYLKLEMVEESVRMFLEN 299
Query: 271 MGLAGAELTRSTFVSVIKLCATTKELRLARQLHSQVLKNGIDFDHNIRTGLMVAYSKCGK 330
+ +L T SV++ C ++L LA+ +++ +LK G + +R L+ Y+KCG
Sbjct: 300 LDQFKPDLL--TVSSVLRACGHLRDLSLAKYIYNYMLKAGFVLESTVRNILIDVYAKCGD 357
Query: 331 MEDASKIFSMMREMKDVVSWTAMISGHLQNGAIDLAVNFFCQMTREGVRPNGFTYSIILT 390
M A +F+ M E KD VSW ++ISG++Q+G + A+ F M + + TY ++++
Sbjct: 358 MITARDVFNSM-ECKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLIS 416
Query: 391 AQPAVSPFQ----VHAHIIKTNYEKSFSVGTALLNAYVKKGILDEAAKVFELIDEKDIVA 446
++ + +H++ IK+ SV AL++ Y K G + ++ K+F + D V
Sbjct: 417 VSTRLADLKFGKGLHSNGIKSGICIDLSVSNALIDMYAKCGEVGDSLKIFSSMGTGDTVT 476
Query: 447 WSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFHACS 506
W+ +++ + GD +++ Q+ V P+ TF + C A AA GK+ H C
Sbjct: 477 WNTVISACVRFGDFATGLQVTTQMRKSEVVPDMATFLVTLPMC-ASLAAKRLGKEIHCCL 535
Query: 507 IKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQRKRDLVSWNSMICGYAQHGHTKKAL 566
++ + L + +AL+ MYSK G +E++S VF+R +RD+V+W MI Y +G +KAL
Sbjct: 536 LRFGYESELQIGNALIEMYSKCGCLENSSRVFERMSRRDVVTWTGMIYAYGMYGEGEKAL 595
Query: 567 EVFKEMRRQDLEFDGITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDL 626
E F +M + + D + FI +I AC+H+GLVDEG F+ M + I P +EHY+C+VDL
Sbjct: 596 ETFADMEKSGIVPDSVVFIAIIYACSHSGLVDEGLACFEKMKTHYKIDPMIEHYACVVDL 655
Query: 627 YSRAGMLEKAMDIINRMPFAASATVWRTVLAACR--------------LISLQPHDSAIY 672
SR+ + KA + I MP A++W +VL ACR +I L P D
Sbjct: 656 LSRSQKISKAEEFIQAMPIKPDASIWASVLRACRTSGDMETAERVSRRIIELNPDDPGYS 715
Query: 673 VLLSNMYAATGHWQERARVRKLMNDRKVKKEAGYSWIEVKNKTYSFLAGDISHPQSNQIY 732
+L SN YAA W + + +RK + D+ + K GYSWIEV + F +GD S PQS IY
Sbjct: 716 ILASNAYAALRKWDKVSLIRKSLKDKHITKNPGYSWIEVGKNVHVFSSGDDSAPQSEAIY 775
Query: 733 SKLEELSTRLKDAGYKPDTSYVLQDIDDEH-KEAILSQHSERLAIAFGLVATPAGAPLQI 791
LE L + + GY PD V Q++++E K ++ HSERLAIAFGL+ T G PLQ+
Sbjct: 776 KSLEILYSLMAKEGYIPDPREVSQNLEEEEEKRRLICGHSERLAIAFGLLNTEPGTPLQV 835
Query: 792 VKNLRVCGDCHTVIKLISKLERRDIVVRDTNRFHHFKEGLCSCGDYW 838
+KNLRVCGDCH V KLISK+ R+I+VRD NRFH FK+G CSC D W
Sbjct: 836 MKNLRVCGDCHEVTKLISKIVGREILVRDANRFHLFKDGTCSCKDRW 882
|
|
| TAIR|locus:2125899 AT4G33170 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1327 (472.2 bits), Expect = 2.1e-139, Sum P(2) = 2.1e-139
Identities = 279/722 (38%), Positives = 434/722 (60%)
Query: 137 DDMNESNVVSWTSLLSGYARNKMNDRVLELFHRMQVEGIKPNSFTFSTVLGVLADEGIVA 196
D + S ++ LS Y + +L+ F M ++ + TF +L +A
Sbjct: 273 DASSVSEIIFRNKGLSEYLHSGQYSALLKCFADMVESDVECDQVTFILMLATAVKVDSLA 332
Query: 197 TAVQVHTMVIKNGGEVVTSVCNALISMYLKSKMVRDARAVFDGMEDRDSITWNSMVAGYV 256
QVH M +K G +++ +V N+LI+MY K + AR VFD M +RD I+WNS++AG
Sbjct: 333 LGQQVHCMALKLGLDLMLTVSNSLINMYCKLRKFGFARTVFDNMSERDLISWNSVIAGIA 392
Query: 257 TNELHMEAFETFNNMGLAGAELTRSTFVSVIKLCATTKE-LRLARQLHSQVLK-NGIDFD 314
N L +EA F + G + + T SV+K ++ E L L++Q+H +K N + D
Sbjct: 393 QNGLEVEAVCLFMQLLRCGLKPDQYTMTSVLKAASSLPEGLSLSKQVHVHAIKINNVS-D 451
Query: 315 HNIRTGLMVAYSKCGKMEDASKIFSMMREMKDVVSWTAMISGHLQNGAIDLAVNFFCQMT 374
+ T L+ AYS+ M++A +F R D+V+W AM++G+ Q+ + F M
Sbjct: 452 SFVSTALIDAYSRNRCMKEAEILFE--RHNFDLVAWNAMMAGYTQSHDGHKTLKLFALMH 509
Query: 375 REGVRPNGFTYSIILTAQP---AVSPF-QVHAHIIKTNYEKSFSVGTALLNAYVKKGILD 430
++G R + FT + + A++ QVHA+ IK+ Y+ V + +L+ YVK G +
Sbjct: 510 KQGERSDDFTLATVFKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMS 569
Query: 431 EAAKVFELIDEKDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACT 490
A F+ I D VAW+ M++G + G+ E A ++ Q+ GV P+EFT +++ A +
Sbjct: 570 AAQFAFDSIPVPDDVAWTTMISGCIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKASS 629
Query: 491 APSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQRKRDLVSWN 550
+A +EQG+Q HA ++K N V ++LV MY+K G+I+ A +FKR ++ +WN
Sbjct: 630 CLTA-LEQGRQIHANALKLNCTNDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWN 688
Query: 551 SMICGYAQHGHTKKALEVFKEMRRQDLEFDGITFIGVITACTHAGLVDEGQQYFDIMVNE 610
+M+ G AQHG K+ L++FK+M+ ++ D +TFIGV++AC+H+GLV E ++ M +
Sbjct: 689 AMLVGLAQHGEGKETLQLFKQMKSLGIKPDKVTFIGVLSACSHSGLVSEAYKHMRSMHGD 748
Query: 611 HHIYPTMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACR---------- 660
+ I P +EHYSC+ D RAG++++A ++I M ASA+++RT+LAACR
Sbjct: 749 YGIKPEIEHYSCLADALGRAGLVKQAENLIESMSMEASASMYRTLLAACRVQGDTETGKR 808
Query: 661 ----LISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMNDRKVKKEAGYSWIEVKNKTY 716
L+ L+P DS+ YVLLSNMYAA W E R +M KVKK+ G+SWIEVKNK +
Sbjct: 809 VATKLLELEPLDSSAYVLLSNMYAAASKWDEMKLARTMMKGHKVKKDPGFSWIEVKNKIH 868
Query: 717 SFLAGDISHPQSNQIYSKLEELSTRLKDAGYKPDTSYVLQDIDDEHKEAILSQHSERLAI 776
F+ D S+ Q+ IY K++++ +K GY P+T + L D+++E KE L HSE+LA+
Sbjct: 869 IFVVDDRSNRQTELIYRKVKDMIRDIKQEGYVPETDFTLVDVEEEEKERALYYHSEKLAV 928
Query: 777 AFGLVATPAGAPLQIVKNLRVCGDCHTVIKLISKLERRDIVVRDTNRFHHFKEGLCSCGD 836
AFGL++TP P++++KNLRVCGDCH +K I+K+ R+IV+RD NRFH FK+G+CSCGD
Sbjct: 929 AFGLLSTPPSTPIRVIKNLRVCGDCHNAMKYIAKVYNREIVLRDANRFHRFKDGICSCGD 988
Query: 837 YW 838
YW
Sbjct: 989 YW 990
|
|
| TAIR|locus:2131939 MEF29 "AT4G30700" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1348 (479.6 bits), Expect = 1.1e-137, P = 1.1e-137
Identities = 273/758 (36%), Positives = 440/758 (58%)
Query: 99 QVHCECVKSGFARDVNVSTSLVDLYMRTNNVEDGRRVFDDMNESNVVSWTSLLSGYARNK 158
Q H + + GF D+++ T L + R +F + +V + L+ G++ N+
Sbjct: 38 QTHAQIILHGFRNDISLLTKLTQRLSDLGAIYYARDIFLSVQRPDVFLFNVLMRGFSVNE 97
Query: 159 MNDRVLELF-HRMQVEGIKPNSFTFSTVLGVLADEGIVATAVQVHTMVIKNGGEVVTSVC 217
L +F H + +KPNS T++ + + +H + +G + +
Sbjct: 98 SPHSSLSVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRAGRVIHGQAVVDGCDSELLLG 157
Query: 218 NALISMYLKSKMVRDARAVFDGMEDRDSITWNSMVAGYVTNELHMEAFETFNNM-GLAGA 276
+ ++ MY K V DAR VFD M ++D+I WN+M++GY NE+++E+ + F ++ +
Sbjct: 158 SNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESCT 217
Query: 277 ELTRSTFVSVIKLCATTKELRLARQLHSQVLKNGIDFDHN-IRTGLMVAYSKCGKMEDAS 335
L +T + ++ A +ELRL Q+HS K G + H+ + TG + YSKCGK++ S
Sbjct: 218 RLDTTTLLDILPAVAELQELRLGMQIHSLATKTGC-YSHDYVLTGFISLYSKCGKIKMGS 276
Query: 336 KIFSMMREMKDVVSWTAMISGHLQNGAIDLAVNFFCQMTREGVRPNGFTY-SIILTAQPA 394
+F R+ D+V++ AMI G+ NG +L+++ F ++ G R T S++ +
Sbjct: 277 ALFREFRK-PDIVAYNAMIHGYTSNGETELSLSLFKELMLSGARLRSSTLVSLVPVSGHL 335
Query: 395 VSPFQVHAHIIKTNYEKSFSVGTALLNAYVKKGILDEAAKVFELIDEKDIVAWSAMLAGY 454
+ + +H + +K+N+ SV TAL Y K ++ A K+F+ EK + +W+AM++GY
Sbjct: 336 MLIYAIHGYCLKSNFLSHASVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGY 395
Query: 455 AQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFHACSIKAKLNNA 514
Q G TE A+ ++R++ PN T + +++AC A A+ GK H ++
Sbjct: 396 TQNGLTEDAISLFREMQKSEFSPNPVTITCILSAC-AQLGALSLGKWVHDLVRSTDFESS 454
Query: 515 LCVSSALVTMYSKKGNIESASEVFKRQRKRDLVSWNSMICGYAQHGHTKKALEVFKEMRR 574
+ VS+AL+ MY+K G+I A +F K++ V+WN+MI GY HG ++AL +F EM
Sbjct: 455 IYVSTALIGMYAKCGSIAEARRLFDLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLN 514
Query: 575 QDLEFDGITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLE 634
+ +TF+ V+ AC+HAGLV EG + F+ M++ + P+++HY+CMVD+ RAG L+
Sbjct: 515 SGITPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACMVDILGRAGHLQ 574
Query: 635 KAMDIINRMPFAASATVWRTVLAACR--------------LISLQPHDSAIYVLLSNMYA 680
+A+ I M ++VW T+L ACR L L P + +VLLSN+++
Sbjct: 575 RALQFIEAMSIEPGSSVWETLLGACRIHKDTNLARTVSEKLFELDPDNVGYHVLLSNIHS 634
Query: 681 ATGHWQERARVRKLMNDRKVKKEAGYSWIEVKNKTYSFLAGDISHPQSNQIYSKLEELST 740
A ++ + A VR+ RK+ K GY+ IE+ + F +GD SHPQ +IY KLE+L
Sbjct: 635 ADRNYPQAATVRQTAKKRKLAKAPGYTLIEIGETPHVFTSGDQSHPQVKEIYEKLEKLEG 694
Query: 741 RLKDAGYKPDTSYVLQDIDDEHKEAILSQHSERLAIAFGLVATPAGAPLQIVKNLRVCGD 800
++++AGY+P+T L D+++E +E ++ HSERLAIAFGL+AT G ++I+KNLRVC D
Sbjct: 695 KMREAGYQPETELALHDVEEEERELMVKVHSERLAIAFGLIATEPGTEIRIIKNLRVCLD 754
Query: 801 CHTVIKLISKLERRDIVVRDTNRFHHFKEGLCSCGDYW 838
CHTV KLISK+ R IVVRD NRFHHFK+G+CSCGDYW
Sbjct: 755 CHTVTKLISKITERVIVVRDANRFHHFKDGVCSCGDYW 792
|
|
| TAIR|locus:2202074 CRR22 "CHLORORESPIRATORY REDUCTION22" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1292 (459.9 bits), Expect = 9.1e-132, P = 9.1e-132
Identities = 276/759 (36%), Positives = 441/759 (58%)
Query: 98 RQVHCECVKSGFARDVNVSTSLVDLYMRTNNVEDGRRVFDDMNESNVVSWTSLLSGYARN 157
RQ+ K+G ++ T LV L+ R +V++ RVF+ ++ V + ++L G+A+
Sbjct: 54 RQILPLVFKNGLYQEHFFQTKLVSLFCRYGSVDEAARVFEPIDSKLNVLYHTMLKGFAKV 113
Query: 158 KMNDRVLELFHRMQVEGIKPNSFTFSTVLGVLADEGIVATAVQVHTMVIKNGGEVVTSVC 217
D+ L+ F RM+ + ++P + F+ +L V DE + ++H +++K+G +
Sbjct: 114 SDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAM 173
Query: 218 NALISMYLKSKMVRDARAVFDGMEDRDSITWNSMVAGYVTNELHMEAFETFNNMGLAGAE 277
L +MY K + V +AR VFD M +RD ++WN++VAGY N + A E +M +
Sbjct: 174 TGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLK 233
Query: 278 LTRSTFVSVIKLCATTKELRLARQLHSQVLKNGIDFDHNIRTGLMVAYSKCGKMEDASKI 337
+ T VSV+ + + + + +++H +++G D NI T L+ Y+KCG +E A ++
Sbjct: 234 PSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQL 293
Query: 338 FSMMREMKDVVSWTAMISGHLQNGAIDLAVNFFCQMTREGVRPNGFTYSIILTAQPAVSP 397
F M E ++VVSW +MI ++QN A+ F +M EGV+P + L A +
Sbjct: 294 FDGMLE-RNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGD 352
Query: 398 FQ----VHAHIIKTNYEKSFSVGTALLNAYVKKGILDEAAKVFELIDEKDIVAWSAMLAG 453
+ +H ++ +++ SV +L++ Y K +D AA +F + + +V+W+AM+ G
Sbjct: 353 LERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILG 412
Query: 454 YAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFHACSIKAKLNN 513
+AQ G A+ + Q+ S VKP+ FT+ SVI A A + K H +++ L+
Sbjct: 413 FAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAI-AELSITHHAKWIHGVVMRSCLDK 471
Query: 514 ALCVSSALVTMYSKKGNIESASEVFKRQRKRDLVSWNSMICGYAQHGHTKKALEVFKEMR 573
+ V++ALV MY+K G I A +F +R + +WN+MI GY HG K ALE+F+EM+
Sbjct: 472 NVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQ 531
Query: 574 RQDLEFDGITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGML 633
+ ++ +G+TF+ VI+AC+H+GLV+ G + F +M + I +M+HY MVDL RAG L
Sbjct: 532 KGTIKPNGVTFLSVISACSHSGLVEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRL 591
Query: 634 EKAMDIINRMPFAASATVWRTVLAAC--------------RLISLQPHDSAIYVLLSNMY 679
+A D I +MP + V+ +L AC RL L P D +VLL+N+Y
Sbjct: 592 NEAWDFIMQMPVKPAVNVYGAMLGACQIHKNVNFAEKAAERLFELNPDDGGYHVLLANIY 651
Query: 680 AATGHWQERARVRKLMNDRKVKKEAGYSWIEVKNKTYSFLAGDISHPQSNQIYSKLEELS 739
A W++ +VR M + ++K G S +E+KN+ +SF +G +HP S +IY+ LE+L
Sbjct: 652 RAASMWEKVGQVRVSMLRQGLRKTPGCSMVEIKNEVHSFFSGSTAHPDSKKIYAFLEKLI 711
Query: 740 TRLKDAGYKPDTSYVLQDIDDEHKEAILSQHSERLAIAFGLVATPAGAPLQIVKNLRVCG 799
+K+AGY PDT+ VL ++++ KE +LS HSE+LAI+FGL+ T AG + + KNLRVC
Sbjct: 712 CHIKEAGYVPDTNLVL-GVENDVKEQLLSTHSEKLAISFGLLNTTAGTTIHVRKNLRVCA 770
Query: 800 DCHTVIKLISKLERRDIVVRDTNRFHHFKEGLCSCGDYW 838
DCH K IS + R+IVVRD RFHHFK G CSCGDYW
Sbjct: 771 DCHNATKYISLVTGREIVVRDMQRFHHFKNGACSCGDYW 809
|
|
| TAIR|locus:2205425 AT1G68930 "AT1G68930" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1096 (390.9 bits), Expect = 1.8e-131, Sum P(2) = 1.8e-131
Identities = 227/546 (41%), Positives = 332/546 (60%)
Query: 310 GIDFDHNIR-TGLMVAYSKCGKMEDASKIFSMMRE--MKDVVSWTAMISGHLQNGAIDLA 366
G+D + + LM CG +EDA ++F M + + + L AI+
Sbjct: 199 GLDDRNTVMYNSLMGGLLACGMIEDALQLFRGMEKDSVSWAAMIKGLAQNGLAKEAIECF 258
Query: 367 VNFFCQMTREGVRPNGFTYSIILTAQPAVSPFQVHAHIIKTNYEKSFSVGTALLNAYVKK 426
Q + P G Q+HA II+TN++ VG+AL++ Y K
Sbjct: 259 REMKVQGLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCKC 318
Query: 427 GILDEAAKVFELIDEKDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVI 486
L A VF+ + +K++V+W+AM+ GY Q G E AVKI+ + G+ P+ +T I
Sbjct: 319 KCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAI 378
Query: 487 NACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQRKRDL 546
+AC A +++E+G QFH +I + L + + VS++LVT+Y K G+I+ ++ +F RD
Sbjct: 379 SAC-ANVSSLEEGSQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNVRDA 437
Query: 547 VSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGITFIGVITACTHAGLVDEGQQYFDI 606
VSW +M+ YAQ G + +++F +M + L+ DG+T GVI+AC+ AGLV++GQ+YF +
Sbjct: 438 VSWTAMVSAYAQFGRAVETIQLFDKMVQHGLKPDGVTLTGVISACSRAGLVEKGQRYFKL 497
Query: 607 MVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACR------ 660
M +E+ I P++ HYSCM+DL+SR+G LE+AM IN MPF A W T+L+ACR
Sbjct: 498 MTSEYGIVPSIGHYSCMIDLFSRSGRLEEAMRFINGMPFPPDAIGWTTLLSACRNKGNLE 557
Query: 661 --------LISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMNDRKVKKEAGYSWIEVK 712
LI L PH A Y LLS++YA+ G W A++R+ M ++ VKKE G SWI+ K
Sbjct: 558 IGKWAAESLIELDPHHPAGYTLLSSIYASKGKWDSVAQLRRGMREKNVKKEPGQSWIKWK 617
Query: 713 NKTYSFLAGDISHPQSNQIYSKLEELSTRLKDAGYKPDTSYVLQDIDDEHKEAILSQHSE 772
K +SF A D S P +QIY+KLEEL+ ++ D GYKPDTS+V D+++ K +L+ HSE
Sbjct: 618 GKLHSFSADDESSPYLDQIYAKLEELNNKIIDNGYKPDTSFVHHDVEEAVKVKMLNYHSE 677
Query: 773 RLAIAFGLVATPAGAPLQIVKNLRVCGDCHTVIKLISKLERRDIVVRDTNRFHHFKEGLC 832
RLAIAFGL+ P+G P+++ KNLRVC DCH K IS + R+I+VRD RFH FK+G C
Sbjct: 678 RLAIAFGLIFVPSGQPIRVGKNLRVCVDCHNATKHISSVTGREILVRDAVRFHRFKDGTC 737
Query: 833 SCGDYW 838
SCGD+W
Sbjct: 738 SCGDFW 743
|
|
| TAIR|locus:2183931 AT5G13230 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1284 (457.0 bits), Expect = 6.4e-131, P = 6.4e-131
Identities = 288/819 (35%), Positives = 447/819 (54%)
Query: 40 QRNFVEYNRLLFEYCRDSLHQEALNLFLGIRRL-GLPLFGSTLSSVLKTCGCLFDHVFGR 98
+R + NR+ C S+ AL+L + GL ++L+ C D + +
Sbjct: 14 RRLMIRCNRI--RQCGFSVKTAALDLESSDSIIPGLD--SHAYGAMLRRCIQKNDPISAK 69
Query: 99 QVHCECVKSGFARDVNVSTSLVDLYMRTNNVEDGRRVFDDMNESNVVSWTSLLSGYARNK 158
+HC+ +K G D+ + L++ Y++ +D +FD+M E N VS+ +L GYA
Sbjct: 70 AIHCDILKKGSCLDLFATNILLNAYVKAGFDKDALNLFDEMPERNNVSFVTLAQGYA--- 126
Query: 159 MNDRVLELFHRMQVEGIKPNSFTFSTVLGVLADEGIVATAVQVHTMVIKNGGEVVTSVCN 218
D + L+ R+ EG + N F++ L + +H+ ++K G + V
Sbjct: 127 CQDPI-GLYSRLHREGHELNPHVFTSFLKLFVSLDKAEICPWLHSPIVKLGYDSNAFVGA 185
Query: 219 ALISMYLKSKMVRDARAVFDGMEDRDSITWNSMVAGYVTNELHMEAFETFNNMGLAGAEL 278
ALI+ Y V AR VF+G+ +D + W +V+ YV N ++ + + M +AG
Sbjct: 186 ALINAYSVCGSVDSARTVFEGILCKDIVVWAGIVSCYVENGYFEDSLKLLSCMRMAGFMP 245
Query: 279 TRSTFVSVIKLCATTKELRLARQLHSQVLKNGIDFDHNIRTGLMVAYSKCGKMEDASKIF 338
TF + +K A+ +H Q+LK D + GL+ Y++ G M DA K+F
Sbjct: 246 NNYTFDTALKASIGLGAFDFAKGVHGQILKTCYVLDPRVGVGLLQLYTQLGDMSDAFKVF 305
Query: 339 SMMREMKDVVSWTAMISGHLQNGAIDLAVNFFCQMTREGVRPNGFTYSIILT--AQPAVS 396
+ M + DVV W+ MI+ QNG + AV+ F +M V PN FT S IL A S
Sbjct: 306 NEMPK-NDVVPWSFMIARFCQNGFCNEAVDLFIRMREAFVVPNEFTLSSILNGCAIGKCS 364
Query: 397 PF--QVHAHIIKTNYEKSFSVGTALLNAYVKKGILDEAAKVFELIDEKDIVAWSAMLAGY 454
Q+H ++K ++ V AL++ Y K +D A K+F + K+ V+W+ ++ GY
Sbjct: 365 GLGEQLHGLVVKVGFDLDIYVSNALIDVYAKCEKMDTAVKLFAELSSKNEVSWNTVIVGY 424
Query: 455 AQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFHACSIKAKLNNA 514
+G+ A ++R+ V E TFSS + AC A A+++ G Q H +IK
Sbjct: 425 ENLGEGGKAFSMFREALRNQVSVTEVTFSSALGAC-ASLASMDLGVQVHGLAIKTNNAKK 483
Query: 515 LCVSSALVTMYSKKGNIESASEVFKRQRKRDLVSWNSMICGYAQHGHTKKALEVFKEMRR 574
+ VS++L+ MY+K G+I+ A VF D+ SWN++I GY+ HG ++AL + M+
Sbjct: 484 VAVSNSLIDMYAKCGDIKFAQSVFNEMETIDVASWNALISGYSTHGLGRQALRILDIMKD 543
Query: 575 QDLEFDGITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLE 634
+D + +G+TF+GV++ C++AGL+D+GQ+ F+ M+ +H I P +EHY+CMV L R+G L+
Sbjct: 544 RDCKPNGLTFLGVLSGCSNAGLIDQGQECFESMIRDHGIEPCLEHYTCMVRLLGRSGQLD 603
Query: 635 KAMDIINRMPFAASATVWRTVLAAC--------------RLISLQPHDSAIYVLLSNMYA 680
KAM +I +P+ S +WR +L+A ++ + P D A YVL+SNMYA
Sbjct: 604 KAMKLIEGIPYEPSVMIWRAMLSASMNQNNEEFARRSAEEILKINPKDEATYVLVSNMYA 663
Query: 681 ATGHWQERARVRKLMNDRKVKKEAGYSWIEVKNKTYSFLAGDISHPQSNQIYSKLEELST 740
W A +RK M + VKKE G SWIE + + F G HP I LE L+
Sbjct: 664 GAKQWANVASIRKSMKEMGVKKEPGLSWIEHQGDVHYFSVGLSDHPDMKLINGMLEWLNM 723
Query: 741 RLKDAGYKPDTSYVLQDIDDEHKEAILSQHSERLAIAFGLVATPAGAP-LQIVKNLRVCG 799
+ AGY PD + VL D+DDE K+ L HSERLA+A+GLV P+ + I+KNLR+C
Sbjct: 724 KATRAGYVPDRNAVLLDMDDEEKDKRLWVHSERLALAYGLVRMPSSRNRILIMKNLRICS 783
Query: 800 DCHTVIKLISKLERRDIVVRDTNRFHHFKEGLCSCGDYW 838
DCH+ +K+IS + +RD+V+RD NRFHHF G+CSCGD+W
Sbjct: 784 DCHSAMKVISSIVQRDLVIRDMNRFHHFHAGVCSCGDHW 822
|
|
| TAIR|locus:2103483 OTP84 "ORGANELLE TRANSCRIPT PROCESSING 84" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 818 (293.0 bits), Expect = 6.2e-129, Sum P(2) = 6.2e-129
Identities = 157/389 (40%), Positives = 251/389 (64%)
Query: 465 KIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTM 524
K+ + + +KPN T +++ +C A SA + +GK+ HA +IK L + V SALV M
Sbjct: 503 KVSKGASRVSLKPNSITLMTILPSCAALSA-LAKGKEIHAYAIKNNLATDVAVGSALVDM 561
Query: 525 YSKKGNIESASEVFKRQRKRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGITF 584
Y+K G ++ + +VF + ++++++WN +I Y HG+ ++A+++ + M Q ++ + +TF
Sbjct: 562 YAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTF 621
Query: 585 IGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDIINRMP 644
I V AC+H+G+VDEG + F +M ++ + P+ +HY+C+VDL RAG +++A ++N MP
Sbjct: 622 ISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMP 681
Query: 645 FAAS-ATVWRTVLAACR--------------LISLQPHDSAIYVLLSNMYAATGHWQERA 689
+ A W ++L A R LI L+P+ ++ YVLL+N+Y++ G W +
Sbjct: 682 RDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKAT 741
Query: 690 RVRKLMNDRKVKKEAGYSWIEVKNKTYSFLAGDISHPQSNQIYSKLEELSTRLKDAGYKP 749
VR+ M ++ V+KE G SWIE ++ + F+AGD SHPQS ++ LE L R++ GY P
Sbjct: 742 EVRRNMKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLSGYLETLWERMRKEGYVP 801
Query: 750 DTSYVLQDIDDEHKEAILSQHSERLAIAFGLVATPAGAPLQIVKNLRVCGDCHTVIKLIS 809
DTS VL +++++ KE +L HSE+LAIAFG++ T G +++ KNLRVC DCH K IS
Sbjct: 802 DTSCVLHNVEEDEKEILLCGHSEKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLATKFIS 861
Query: 810 KLERRDIVVRDTNRFHHFKEGLCSCGDYW 838
K+ R+I++RD RFH FK G CSCGDYW
Sbjct: 862 KIVDREIILRDVRRFHRFKNGTCSCGDYW 890
|
|
| TAIR|locus:2119440 AT4G13650 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1257 (447.5 bits), Expect = 4.6e-128, P = 4.6e-128
Identities = 270/823 (32%), Positives = 447/823 (54%)
Query: 34 LFDRSPQRNFVEYNRLLFEYCRDSLHQEALNLFLGIRRLGLPLFGSTLSSVLKTCGCLFD 93
+FD ++ + ++ ++ EA+ LF + LG+ SSVL C +
Sbjct: 244 VFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIES 303
Query: 94 HVFGRQVHCECVKSGFARDVNVSTSLVDLYMRTNNVEDGRRVFDDMNESNVVSWTSLLSG 153
G Q+H +K GF+ D V +LV LY N+ +F +M++ + V++ +L++G
Sbjct: 304 LEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLING 363
Query: 154 YARNKMNDRVLELFHRMQVEGIKPNSFTFSTVLGVLADEGIVATAVQVHTMVIKNGGEVV 213
++ ++ +ELF RM ++G++P+S T ++++ + +G + Q+H K G
Sbjct: 364 LSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASN 423
Query: 214 TSVCNALISMYLKSKMVRDARAVFDGMEDRDSITWNSMVAGY-VTNELHMEAFETFNNMG 272
+ AL+++Y K + A F E + + WN M+ Y + ++L +F F M
Sbjct: 424 NKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLR-NSFRIFRQMQ 482
Query: 273 LAGAELTRSTFVSVIKLCATTKELRLARQLHSQVLKNGIDFDHNIRTGLMVAYSKCGKME 332
+ + T+ S++K C +L L Q+HSQ++K + + + L+ Y+K GK++
Sbjct: 483 IEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLD 542
Query: 333 DASKIFSMMREMKDVVSWTAMISGHLQNGAIDLAVNFFCQMTREGVRPN-GFTYSIILTA 391
A I V T + N F + R G T ++ A
Sbjct: 543 TAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACA 602
Query: 392 --QPAVSPFQVHAHIIKTNYEKSFSVGTALLNAYVKKGILDEAAKVFELIDEKDIVAWSA 449
Q Q+HA + + AL+ Y + G ++E+ FE + D +AW+A
Sbjct: 603 GLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNA 662
Query: 450 MLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFHACSIKA 509
+++G+ Q G+ E A++++ ++ EG+ N FTF S + A + +A ++QGKQ HA K
Sbjct: 663 LVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASE-TANMKQGKQVHAVITKT 721
Query: 510 KLNNALCVSSALVTMYSKKGNIESASEVFKRQRKRDLVSWNSMICGYAQHGHTKKALEVF 569
++ V +AL++MY+K G+I A + F ++ VSWN++I Y++HG +AL+ F
Sbjct: 722 GYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSF 781
Query: 570 KEMRRQDLEFDGITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSR 629
+M ++ + +T +GV++AC+H GLVD+G YF+ M +E+ + P EHY C+VD+ +R
Sbjct: 782 DQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTR 841
Query: 630 AGMLEKAMDIINRMPFAASATVWRTVLAAC--------------RLISLQPHDSAIYVLL 675
AG+L +A + I MP A VWRT+L+AC L+ L+P DSA YVLL
Sbjct: 842 AGLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLL 901
Query: 676 SNMYAATGHWQERARVRKLMNDRKVKKEAGYSWIEVKNKTYSFLAGDISHPQSNQIYSKL 735
SN+YA + W R R+ M ++ VKKE G SWIEVKN +SF GD +HP +++I+
Sbjct: 902 SNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSFYVGDQNHPLADEIHEYF 961
Query: 736 EELSTRLKDAGYKPDTSYVLQDIDDEHKEAILSQHSERLAIAFGLVATPAGAPLQIVKNL 795
++L+ R + GY D +L ++ E K+ I+ HSE+LAI+FGL++ PA P+ ++KNL
Sbjct: 962 QDLTKRASEIGYVQDCFSLLNELQHEQKDPIIFIHSEKLAISFGLLSLPATVPINVMKNL 1021
Query: 796 RVCGDCHTVIKLISKLERRDIVVRDTNRFHHFKEGLCSCGDYW 838
RVC DCH IK +SK+ R+I+VRD RFHHF+ G CSC DYW
Sbjct: 1022 RVCNDCHAWIKFVSKVSNREIIVRDAYRFHHFEGGACSCKDYW 1064
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9ZUW3 | PP172_ARATH | No assigned EC number | 0.6350 | 0.9630 | 0.9297 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 838 | |||
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 0.0 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-146 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 8e-82 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-48 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-42 | |
| pfam14432 | 116 | pfam14432, DYW_deaminase, DYW family of nucleic ac | 1e-26 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-25 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-15 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-11 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-10 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 8e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-08 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-08 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 3e-07 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 6e-07 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 3e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 4e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-04 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 2e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 7e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 7e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 8e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 0.001 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 0.001 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.001 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.001 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 549 bits (1417), Expect = 0.0
Identities = 283/808 (35%), Positives = 428/808 (52%), Gaps = 23/808 (2%)
Query: 47 NRLLFEYCRDSLHQEALNLFLGIRRLGLPLFGSTLSSVLKTCGCLFDHVFGRQVHCECVK 106
N L C ++AL L ++ L +P+ ++ + C G +V +
Sbjct: 55 NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALS 114
Query: 107 SGFARDVNVSTSLVDLYMRTNNVEDGRRVFDDMNESNVVSWTSLLSGYARNKMNDRVLEL 166
S + V + +++ +++R + VF M E ++ SW L+ GYA+ D L L
Sbjct: 115 SHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCL 174
Query: 167 FHRMQVEGIKPNSFTFSTVLGVLADEGIVATAVQVHTMVIKNGGEVVTSVCNALISMYLK 226
+HRM G++P+ +TF VL +A +VH V++ G E+ V NALI+MY+K
Sbjct: 175 YHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVK 234
Query: 227 SKMVRDARAVFDGMEDRDSITWNSMVAGYVTNELHMEAFETFNNMGLAGAELTRSTFVSV 286
V AR VFD M RD I+WN+M++GY N +E E F M + T SV
Sbjct: 235 CGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSV 294
Query: 287 IKLCATTKELRLARQLHSQVLKNGIDFDHNIRTGLMVAYSKCGKMEDASKIFSMMREMKD 346
I C + RL R++H V+K G D ++ L+ Y G +A K+FS M E KD
Sbjct: 295 ISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRM-ETKD 353
Query: 347 VVSWTAMISGHLQNGAIDLAVNFFCQMTREGVRPNGFTYSIILTAQPAVSPFQV----HA 402
VSWTAMISG+ +NG D A+ + M ++ V P+ T + +L+A + V H
Sbjct: 354 AVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHE 413
Query: 403 HIIKTNYEKSFSVGTALLNAYVKKGILDEAAKVFELIDEKDIVAWSAMLAGYAQIGDTEG 462
+ V AL+ Y K +D+A +VF I EKD+++W++++AG
Sbjct: 414 LAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFE 473
Query: 463 AVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALV 522
A+ +RQ+ +KPN T + ++AC A A+ GK+ HA ++ + + +AL+
Sbjct: 474 ALIFFRQMLLT-LKPNSVTLIAALSAC-ARIGALMCGKEIHAHVLRTGIGFDGFLPNALL 531
Query: 523 TMYSKKGNIESASEVFKRQRKRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGI 582
+Y + G + A F K D+VSWN ++ GY HG A+E+F M + D +
Sbjct: 532 DLYVRCGRMNYAWNQFNSHEK-DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEV 590
Query: 583 TFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDIINR 642
TFI ++ AC+ +G+V +G +YF M ++ I P ++HY+C+VDL RAG L +A + IN+
Sbjct: 591 TFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINK 650
Query: 643 MPFAASATVWRTVLAACRL--------------ISLQPHDSAIYVLLSNMYAATGHWQER 688
MP VW +L ACR+ L P+ Y+LL N+YA G W E
Sbjct: 651 MPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEV 710
Query: 689 ARVRKLMNDRKVKKEAGYSWIEVKNKTYSFLAGDISHPQSNQIYSKLEELSTRLKDAGYK 748
ARVRK M + + + G SW+EVK K ++FL D SHPQ +I + LE ++K +G
Sbjct: 711 ARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLA 770
Query: 749 PDTSYVLQDIDDEHKEAILSQHSERLAIAFGLVATPAGAPLQIVKNLRVCGDCHTVIKLI 808
S + +I+ K+ I HSERLAIAFGL+ T G P+ + KNL +C +CH +K I
Sbjct: 771 GSESSSMDEIEVS-KDDIFCGHSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFI 829
Query: 809 SKLERRDIVVRDTNRFHHFKEGLCSCGD 836
SK+ RR+I VRDT +FHHFK+G CSCGD
Sbjct: 830 SKIVRREISVRDTEQFHHFKDGECSCGD 857
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 448 bits (1153), Expect = e-146
Identities = 212/597 (35%), Positives = 338/597 (56%), Gaps = 21/597 (3%)
Query: 261 HMEAFETFNNMGLAGA-ELTRSTFVSVIKLCATTKELRLARQLHSQVLKNGIDFDHNIRT 319
H EA E F + L ST+ ++++ C K +R + ++ V +G + D +
Sbjct: 103 HREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMN 162
Query: 320 GLMVAYSKCGKMEDASKIFSMMREMKDVVSWTAMISGHLQNGAIDLAVNFFCQMTREGVR 379
+++ + KCG + DA ++F M E +++ SW +I G + G A F +M +G
Sbjct: 163 RVLLMHVKCGMLIDARRLFDEMPE-RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSD 221
Query: 380 PNGFTYSIILTAQPAVSPF----QVHAHIIKTNYEKSFSVGTALLNAYVKKGILDEAAKV 435
T+ ++L A + Q+H ++KT V AL++ Y K G +++A V
Sbjct: 222 AEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCV 281
Query: 436 FELIDEKDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAA 495
F+ + EK VAW++MLAGYA G +E A+ +Y ++ GV ++FTFS +I + A
Sbjct: 282 FDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSR-LAL 340
Query: 496 VEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQRKRDLVSWNSMICG 555
+E KQ HA I+ + ++ALV +YSK G +E A VF R +++L+SWN++I G
Sbjct: 341 LEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAG 400
Query: 556 YAQHGHTKKALEVFKEMRRQDLEFDGITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYP 615
Y HG KA+E+F+ M + + + +TF+ V++AC ++GL ++G + F M H I P
Sbjct: 401 YGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKP 460
Query: 616 TMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACR--------------L 661
HY+CM++L R G+L++A +I R PF + +W +L ACR L
Sbjct: 461 RAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKL 520
Query: 662 ISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMNDRKVKKEAGYSWIEVKNKTYSFLAG 721
+ P YV+L N+Y ++G E A+V + + + + +WIEVK + +SF +G
Sbjct: 521 YGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSG 580
Query: 722 DISHPQSNQIYSKLEELSTRLKDAGYKPDTSYVLQDIDDEHKEAILSQHSERLAIAFGLV 781
D HPQS +IY KL+EL + + GY + + +L D+D++ ++ HSE+LAIAFGL+
Sbjct: 581 DRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLI 640
Query: 782 ATPAGAPLQIVKNLRVCGDCHTVIKLISKLERRDIVVRDTNRFHHFKEGLCSCGDYW 838
T PLQI ++ R+C DCH VIK I+ + +R+IVVRD +RFHHFK G CSCGDYW
Sbjct: 641 NTSEWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 280 bits (718), Expect = 8e-82
Identities = 166/537 (30%), Positives = 271/537 (50%), Gaps = 16/537 (2%)
Query: 34 LFDRSPQRNFVEYNRLLFEYCRDSLHQEALNLFLGIRRLGLPLFGSTLSSVLKTCGCLFD 93
+F + P+R+ +N L+ Y + EAL L+ + G+ T VL+TCG + D
Sbjct: 143 VFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPD 202
Query: 94 HVFGRQVHCECVKSGFARDVNVSTSLVDLYMRTNNVEDGRRVFDDMNESNVVSWTSLLSG 153
GR+VH V+ GF DV+V +L+ +Y++ +V R VFD M + +SW +++SG
Sbjct: 203 LARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISG 262
Query: 154 YARNKMNDRVLELFHRMQVEGIKPNSFTFSTVL---GVLADEGIVATAVQVHTMVIKNGG 210
Y N LELF M+ + P+ T ++V+ +L DE + ++H V+K G
Sbjct: 263 YFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERL---GREMHGYVVKTGF 319
Query: 211 EVVTSVCNALISMYLKSKMVRDARAVFDGMEDRDSITWNSMVAGYVTNELHMEAFETFNN 270
V SVCN+LI MYL +A VF ME +D+++W +M++GY N L +A ET+
Sbjct: 320 AVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYAL 379
Query: 271 MGLAGAELTRSTFVSVIKLCATTKELRLARQLHSQVLKNGIDFDHNIRTGLMVAYSKCGK 330
M T SV+ CA +L + +LH + G+ + L+ YSKC
Sbjct: 380 MEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKC 439
Query: 331 MEDASKIFSMMREMKDVVSWTAMISGHLQNGAIDLAVNFFCQMTREGVRPNGFTYSIILT 390
++ A ++F + E KDV+SWT++I+G N A+ FF QM ++PN T L+
Sbjct: 440 IDKALEVFHNIPE-KDVISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALS 497
Query: 391 AQPAVSPF----QVHAHIIKTNYEKSFSVGTALLNAYVKKGILDEAAKVFELIDEKDIVA 446
A + ++HAH+++T + ALL+ YV+ G ++ A F EKD+V+
Sbjct: 498 ACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNS-HEKDVVS 556
Query: 447 WSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQ-FHAC 505
W+ +L GY G AV+++ ++ GV P+E TF S++ AC+ S V QG + FH+
Sbjct: 557 WNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSR-SGMVTQGLEYFHSM 615
Query: 506 SIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQR-KRDLVSWNSMICGYAQHGH 561
K + L + +V + + G + A + D W +++ H H
Sbjct: 616 EEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRH 672
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 182 bits (464), Expect = 2e-48
Identities = 116/389 (29%), Positives = 189/389 (48%), Gaps = 2/389 (0%)
Query: 4 SPALKSLINPQTKQPPKSLRSPFYSKKDQSLFDRSPQRNFVEYNRLLFEYCRDSLHQEAL 63
+++ + P+ + P+ +R KD L D +++ V + + H+EAL
Sbjct: 48 CSSVEQGLKPRPRLKPEPIRIEVSESKDARLDDTQIRKSGVSLCSQIEKLVACGRHREAL 107
Query: 64 NLFLGIR-RLGLPLFGSTLSSVLKTCGCLFDHVFGRQVHCECVKSGFARDVNVSTSLVDL 122
LF + L ST ++++ C L + V+ SGF D + ++ +
Sbjct: 108 ELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLM 167
Query: 123 YMRTNNVEDGRRVFDDMNESNVVSWTSLLSGYARNKMNDRVLELFHRMQVEGIKPNSFTF 182
+++ + D RR+FD+M E N+ SW +++ G LF M +G TF
Sbjct: 168 HVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTF 227
Query: 183 STVLGVLADEGIVATAVQVHTMVIKNGGEVVTSVCNALISMYLKSKMVRDARAVFDGMED 242
+L A G Q+H V+K G T V ALI MY K + DAR VFDGM +
Sbjct: 228 VVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE 287
Query: 243 RDSITWNSMVAGYVTNELHMEAFETFNNMGLAGAELTRSTFVSVIKLCATTKELRLARQL 302
+ ++ WNSM+AGY + EA + M +G + + TF +I++ + L A+Q
Sbjct: 288 KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQA 347
Query: 303 HSQVLKNGIDFDHNIRTGLMVAYSKCGKMEDASKIFSMMREMKDVVSWTAMISGHLQNGA 362
H+ +++ G D T L+ YSK G+MEDA +F M K+++SW A+I+G+ +G
Sbjct: 348 HAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRM-PRKNLISWNALIAGYGNHGR 406
Query: 363 IDLAVNFFCQMTREGVRPNGFTYSIILTA 391
AV F +M EGV PN T+ +L+A
Sbjct: 407 GTKAVEMFERMIAEGVAPNHVTFLAVLSA 435
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 165 bits (418), Expect = 2e-42
Identities = 113/420 (26%), Positives = 183/420 (43%), Gaps = 53/420 (12%)
Query: 34 LFDRSPQRNFVEYNRLLFEYCRDSLHQEALNLFLGIRRLGLPLFGSTLSSVLKTCGCLFD 93
LFD P+RN + ++ ++EA LF + G T +L+ L
Sbjct: 180 LFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGS 239
Query: 94 HVFGRQVHCECVKSGFARDVNVSTSLVDLYMRTNNVEDGRRVFDDMNESNVVSWTSLLSG 153
G+Q+HC +K+G D VS +L+D+Y + ++ED R VFD M E V+W S+L+G
Sbjct: 240 ARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAG 299
Query: 154 YARNKMNDRVLELFHRMQVEGIKPNSFTFSTVLGVLADEGIVATAVQVHTMVIKNGGEVV 213
YA + ++ L L++ M+ G+ + FTFS ++ + + ++ A Q H +I+ G +
Sbjct: 300 YALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLD 359
Query: 214 TSVCNALISMYLKSKMVRDARAVFDGMEDRDSITWNSMVAGYVTNELHMEAFETFNNMGL 273
AL+ +Y K + DAR VFD M ++ I+WN+++AGY + +A E F M
Sbjct: 360 IVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIA 419
Query: 274 AGAELTRSTFVSVIKLCATTKELRLARQLHSQVLKNGIDFDHNIRTGLMVAYSKCGKMED 333
G TF++V+ C YS G E
Sbjct: 420 EGVAPNHVTFLAVLSAC---------------------------------RYS--GLSEQ 444
Query: 334 ASKIFSMMREMKDV----VSWTAMISGHLQNGAIDLAVNFFCQMTREGVRPNGFTYSIIL 389
+IF M E + + + MI + G +D A + R +P ++ +L
Sbjct: 445 GWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAM---IRRAPFKPTVNMWAALL 501
Query: 390 TAQPAVSPFQVHAHIIKTNYEKSFSVG-------TALLNAYVKKGILDEAAKVFELIDEK 442
TA + + + EK + +G LLN Y G EAAKV E + K
Sbjct: 502 TA----CRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557
|
Length = 697 |
| >gnl|CDD|222749 pfam14432, DYW_deaminase, DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 1e-26
Identities = 52/131 (39%), Positives = 72/131 (54%), Gaps = 23/131 (17%)
Query: 705 GYSWIEVKNKTYSFLAGDISHPQSNQIYSKLEELSTRLKDAGYKPDTSYVLQDIDDEH-- 762
G W E L+GD SHP S EEL R+K G P+T + D+D E
Sbjct: 2 GCVWSEG----KKTLSGDGSHPTS------KEELFQRIKVEGVVPETKEIGHDVDAEEFR 51
Query: 763 ----KEAILSQHSERLAIAFGLVATPAGAPLQIVKNL-RVCGDCHTVIKLISKLERRDIV 817
K +L+ H+E+ A+A+GL+ T +I+K L R+CGDCH + I+K R+I+
Sbjct: 52 DNGIKGKLLASHAEKQALAYGLLTT------RIIKVLKRMCGDCHEFFRYIAKYTGREII 105
Query: 818 VRDTNRFHHFK 828
VRD +RFHHFK
Sbjct: 106 VRDPSRFHHFK 116
|
A family of nucleic acid deaminases prototyped by the plant PPR DYW proteins that are implicated in chloroplast and mitochondrial RNA transcript maturation by numerous C to U editing events. The name derives from the DYW motif present at the C-terminus of the classical plant PPR DYW deaminases. Members of this family are present in bacteria, plants, Naegleria, and fungi. Plants and Naegleria show lineage-specific expansions of this family. The classical DYW family contain an additional C-terminal metal-binding cluster composed of 2 histidines and a CxC motif and are often fused to PPR repeats. Ascomycete versions, which are independent lateral transfers, contain a large insert within the domain and are often fused to ankyrin repeats. Bacterial versions are predicted to function as toxins in polymorphic toxin systems. Length = 116 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 112 bits (281), Expect = 2e-25
Identities = 53/164 (32%), Positives = 87/164 (53%)
Query: 32 QSLFDRSPQRNFVEYNRLLFEYCRDSLHQEALNLFLGIRRLGLPLFGSTLSSVLKTCGCL 91
+ +FD P++ V +N +L Y +EAL L+ +R G+ + T S +++ L
Sbjct: 279 RCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRL 338
Query: 92 FDHVFGRQVHCECVKSGFARDVNVSTSLVDLYMRTNNVEDGRRVFDDMNESNVVSWTSLL 151
+Q H +++GF D+ +T+LVDLY + +ED R VFD M N++SW +L+
Sbjct: 339 ALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALI 398
Query: 152 SGYARNKMNDRVLELFHRMQVEGIKPNSFTFSTVLGVLADEGIV 195
+GY + + +E+F RM EG+ PN TF VL G+
Sbjct: 399 AGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLS 442
|
Length = 697 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 80.7 bits (199), Expect = 2e-15
Identities = 102/389 (26%), Positives = 177/389 (45%), Gaps = 49/389 (12%)
Query: 279 TRSTFVSVIKLCATTKELRLARQLHSQVLKNGIDFDHNIRTGLMVAYSKCGKMEDASKIF 338
T STF ++ +CA+++++ A ++ V + G+ D + T L+ +K GK+ DA +F
Sbjct: 436 TLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKV-DA--MF 492
Query: 339 SMMREMK------DVVSWTAMISGHLQNGAIDLAVNFFCQMTREGVRPNGFTYSIILTA- 391
+ EM +V ++ A+I G + G + A + M + V+P+ ++ +++A
Sbjct: 493 EVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISAC 552
Query: 392 --QPAVS-PFQV------HAHIIKTNYEKSFSVGTALLNAYVKKGILDEAAKVFELIDEK 442
AV F V H I ++ +VG AL+ A G +D A +V+++I E
Sbjct: 553 GQSGAVDRAFDVLAEMKAETHPIDPDH---ITVG-ALMKACANAGQVDRAKEVYQMIHEY 608
Query: 443 DI----VAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQ 498
+I ++ + +Q GD + A+ IY + +GVKP+E FS++++ A
Sbjct: 609 NIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVD------VAGHA 662
Query: 499 GKQFHACSI-----KAKLNNALCVSSALVTMYSKKGNIESASEVF---KRQRKRDLVS-W 549
G A I K + S+L+ S N + A E++ K + R VS
Sbjct: 663 GDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTM 722
Query: 550 NSMICGYAQHGHTKKALEVFKEMRRQDLEFDGITFIGVITACTHAGLVDEGQQYFDIM-- 607
N++I + KALEV EM+R L + IT+ ++ A D G D++
Sbjct: 723 NALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVG---LDLLSQ 779
Query: 608 VNEHHIYPTMEHYSCMVDLYSRAGMLEKA 636
E I P + C+ L R EKA
Sbjct: 780 AKEDGIKPNLVMCRCITGLCLR--RFEKA 806
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 59.7 bits (146), Expect = 1e-11
Identities = 16/47 (34%), Positives = 31/47 (65%)
Query: 345 KDVVSWTAMISGHLQNGAIDLAVNFFCQMTREGVRPNGFTYSIILTA 391
DVV++ +I G+ + G ++ A+ F +M + G++PN +TYSI++
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDG 47
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 58.6 bits (143), Expect = 4e-11
Identities = 17/49 (34%), Positives = 31/49 (63%)
Query: 143 NVVSWTSLLSGYARNKMNDRVLELFHRMQVEGIKPNSFTFSTVLGVLAD 191
+VV++ +L+ GY + + L+LF+ M+ GIKPN +T+S ++ L
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 58.2 bits (142), Expect = 5e-11
Identities = 15/48 (31%), Positives = 31/48 (64%)
Query: 442 KDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINAC 489
D+V ++ ++ GY + G E A+K++ ++ G+KPN +T+S +I+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 63.7 bits (155), Expect = 3e-10
Identities = 76/368 (20%), Positives = 148/368 (40%), Gaps = 68/368 (18%)
Query: 147 WTSLLSGYARNKMNDRVLELFHRMQVEGIKPNSFTFSTVLGVLADEGIVATAVQVHTMVI 206
+T+L+S A++ D + E+FH M G++ N TF ++ A G VA A + ++
Sbjct: 475 YTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMR 534
Query: 207 KNGGEVVTSVCNALISMYLKSKMVRDARAVFDGMEDRDSITWNSMVAGYVTNELHMEAFE 266
+ V NALIS +S V DR AF+
Sbjct: 535 SKNVKPDRVVFNALISACGQSGAV-----------DR--------------------AFD 563
Query: 267 TFNNMGLAGAELT-----RSTFVSVIKLCATTKELRLARQLHSQVLKNGIDFDHNIRTGL 321
M AE T +++K CA ++ A++++ + + I + T
Sbjct: 564 VLAEM---KAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIA 620
Query: 322 MVAYSKCGKMEDASKIFSMMREMKDV----VSWTAMI--SGHLQNGAIDLAVNFFCQMTR 375
+ + S+ G + A I+ M++ K V V ++A++ +GH G +D A +
Sbjct: 621 VNSCSQKGDWDFALSIYDDMKK-KGVKPDEVFFSALVDVAGH--AGDLDKAFEILQDARK 677
Query: 376 EGVRPNGFTYSIILTA-------QPAVSPFQVHAHIIKTNYEKSFSVGTALLNAYVKKGI 428
+G++ +YS ++ A + A+ +++ I + S AL+ A +
Sbjct: 678 QGIKLGTVSYSSLMGACSNAKNWKKAL---ELYEDIKSIKLRPTVSTMNALITALCEG-- 732
Query: 429 LDEAAKVFELIDE-------KDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFT 481
++ K E++ E + + +S +L + D + + + Q +G+KPN
Sbjct: 733 -NQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVM 791
Query: 482 FSSVINAC 489
+ C
Sbjct: 792 CRCITGLC 799
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 59.1 bits (143), Expect = 8e-09
Identities = 47/226 (20%), Positives = 102/226 (45%), Gaps = 16/226 (7%)
Query: 430 DEAAKVFELIDEK----DIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSV 485
D A +V L+ E D ++ +++ A+ G + +++ ++ + GV+ N TF ++
Sbjct: 454 DGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGAL 513
Query: 486 INACTAPSAAVEQGKQFHACSI--KAKLNNALCVSSALVTMYSKKGNIESASEVFKRQR- 542
I+ C + A + K F A I + V +AL++ + G ++ A +V +
Sbjct: 514 IDGC---ARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKA 570
Query: 543 -----KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGITFIGVITACTHAGLV 597
D ++ +++ A G +A EV++ + +++ + + +C+ G
Sbjct: 571 ETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDW 630
Query: 598 DEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDIINRM 643
D +D M + + P +S +VD+ AG L+KA +I+
Sbjct: 631 DFALSIYDDM-KKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDA 675
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 51.3 bits (124), Expect = 1e-08
Identities = 14/47 (29%), Positives = 32/47 (68%)
Query: 545 DLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGITFIGVITAC 591
D+V++N++I GY + G ++AL++F EM+++ ++ + T+ +I
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 57.6 bits (139), Expect = 2e-08
Identities = 58/234 (24%), Positives = 115/234 (49%), Gaps = 16/234 (6%)
Query: 420 LNAYVKKGILDEAAKVFELIDEKDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNE 479
A K+ + EA + +LI + ++ +++ A D +GA+++ R + G+K +
Sbjct: 413 FKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADC 472
Query: 480 FTFSSVINACTAPSAAVEQGKQ-FHACS---IKAKLNNALCVSSALVTMYSKKGNIESAS 535
++++I+ C A S V+ + FH ++A ++ AL+ ++ G + A
Sbjct: 473 KLYTTLISTC-AKSGKVDAMFEVFHEMVNAGVEANVHTF----GALIDGCARAGQVAKAF 527
Query: 536 EVFKRQR----KRDLVSWNSMICGYAQHGHTKKALEVFKEMR--RQDLEFDGITFIGVIT 589
+ R K D V +N++I Q G +A +V EM+ ++ D IT ++
Sbjct: 528 GAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMK 587
Query: 590 ACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDIINRM 643
AC +AG VD ++ + M++E++I T E Y+ V+ S+ G + A+ I + M
Sbjct: 588 ACANAGQVDRAKEVYQ-MIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDM 640
|
Length = 1060 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 47.1 bits (113), Expect = 3e-07
Identities = 14/31 (45%), Positives = 24/31 (77%)
Query: 547 VSWNSMICGYAQHGHTKKALEVFKEMRRQDL 577
V++NS+I GY + G ++ALE+FKEM+ + +
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 45.9 bits (110), Expect = 6e-07
Identities = 14/34 (41%), Positives = 25/34 (73%)
Query: 547 VSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD 580
V++N++I G + G ++ALE+FKEM+ + +E D
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 3e-05
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 145 VSWTSLLSGYARNKMNDRVLELFHRMQVEGI 175
V++ SL+SGY + + LELF M+ +G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 40.8 bits (97), Expect = 4e-05
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 543 KRDLVSWNSMICGYAQHGHTKKALEVFKEMR 573
K D+V++N++I G + G +A+E+ EM
Sbjct: 4 KPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 41.2 bits (98), Expect = 5e-05
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 6/48 (12%)
Query: 212 VVTSVCNALISMYLKSKMVRDARAVFDGMEDR----DSITWNSMVAGY 255
VVT N LI Y K V +A +F+ M+ R + T++ ++ G
Sbjct: 3 VVT--YNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 1e-04
Identities = 11/35 (31%), Positives = 20/35 (57%)
Query: 145 VSWTSLLSGYARNKMNDRVLELFHRMQVEGIKPNS 179
V++ +L+ G + + LELF M+ GI+P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.7 bits (101), Expect = 2e-04
Identities = 33/254 (12%), Positives = 89/254 (35%), Gaps = 21/254 (8%)
Query: 404 IIKTNYEKSFSVGTALLNAYVKKGILDEAAKVFELI-----DEKDIVAWSAMLAGYAQIG 458
+ ++ ++ A L G L EA ++ E + + ++G
Sbjct: 14 ALAKLLAEALALLEAGLALLELLGELAEALELLEEALELLPNSDLAGLLLLLALALLKLG 73
Query: 459 DTEGAVKIYRQLTSEGVKPN----EFTFSSVINACTAPSAAVEQGKQFHACSIKAKLNNA 514
E A+++ + + PN ++ A A+E ++ + +
Sbjct: 74 RLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKA----LALDPDPD 129
Query: 515 LCVSSALVTMYSKKGNIESASEVFKR------QRKRDLVSWNSMICGYAQHGHTKKALEV 568
L + + + G+ E A E++++ + + ++ G ++ALE+
Sbjct: 130 LAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALEL 189
Query: 569 FKEMRRQDLEFDGITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYS 628
++ + + + D + + G +E +Y++ + E + L
Sbjct: 190 LEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDP--DNAEALYNLALLLL 247
Query: 629 RAGMLEKAMDIINR 642
G E+A++ + +
Sbjct: 248 ELGRYEEALEALEK 261
|
Length = 291 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 7e-04
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 244 DSITWNSMVAGYVTNELHMEAFETFNNMGLAGAELTRSTFVSVIK-LC 290
D +T+N+++ GY EA + FN M G + T+ +I LC
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 37.5 bits (88), Expect = 7e-04
Identities = 9/34 (26%), Positives = 17/34 (50%)
Query: 144 VVSWTSLLSGYARNKMNDRVLELFHRMQVEGIKP 177
+ ++ +LL A+ D L + M+ G+KP
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.0 bits (87), Expect = 8e-04
Identities = 10/31 (32%), Positives = 21/31 (67%)
Query: 348 VSWTAMISGHLQNGAIDLAVNFFCQMTREGV 378
V++ ++ISG+ + G ++ A+ F +M +GV
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 0.001
Identities = 11/44 (25%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Query: 117 TSLVDLYMRTNNVEDGRRVFDDMNES----NVVSWTSLLSGYAR 156
+L+D Y + VE+ ++F++M + NV +++ L+ G +
Sbjct: 7 NTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 37.0 bits (87), Expect = 0.001
Identities = 13/40 (32%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
Query: 321 LMVAYSKCGKMEDASKIFSMMREMK---DVVSWTAMISGH 357
L+ Y K GK+E+A K+F+ M++ +V +++ +I G
Sbjct: 9 LIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 36.7 bits (86), Expect = 0.001
Identities = 7/35 (20%), Positives = 22/35 (62%)
Query: 445 VAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNE 479
V ++ ++ G + G E A+++++++ G++P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 36.8 bits (86), Expect = 0.001
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 546 LVSWNSMICGYAQHGHTKKALEVFKEMRRQDLE 578
L ++N+++ A+ G AL V +EM+ L+
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLK 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 838 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PF14432 | 116 | DYW_deaminase: DYW family of nucleic acid deaminas | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.95 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.93 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.91 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.9 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.82 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.82 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.8 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.79 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.78 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.76 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.72 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.72 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.71 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.7 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.69 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.69 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.68 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.68 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.67 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.63 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.62 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.6 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.5 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.48 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.48 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.47 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.47 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.41 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.32 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.3 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.28 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.27 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.25 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.24 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.24 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.24 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.21 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.21 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.21 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.2 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.2 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.2 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.2 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.17 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.16 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.14 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.13 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.1 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.05 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.04 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.03 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.03 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.01 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.0 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 98.98 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 98.97 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.92 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 98.91 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.91 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.91 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.88 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.88 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.85 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.85 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 98.84 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 98.84 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.84 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.83 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.81 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.79 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 98.76 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.75 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.71 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 98.68 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.61 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 98.61 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.6 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.52 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.5 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 98.48 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.47 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.43 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.42 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.4 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.38 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.38 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.37 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.36 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.36 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.35 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.34 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.32 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.31 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.29 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.28 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.28 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.25 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.24 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.19 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.17 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.14 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.14 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.12 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.09 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.08 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.08 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.03 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.01 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.01 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.0 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.99 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 97.98 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.98 | |
| PLN02789 | 320 | farnesyltranstransferase | 97.94 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.93 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.9 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.89 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.88 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.84 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 97.82 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 97.79 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 97.77 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 97.76 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.74 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 97.74 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 97.72 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 97.67 | |
| PLN02789 | 320 | farnesyltranstransferase | 97.59 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.55 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.54 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.53 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.52 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 97.48 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.46 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.41 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.41 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.35 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.31 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.3 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.29 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.27 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.26 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 97.25 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.21 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.19 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.19 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.19 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.18 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 97.13 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.12 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.12 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.11 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.11 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.08 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.03 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.93 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 96.89 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 96.87 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 96.85 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.83 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 96.8 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 96.79 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.75 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 96.74 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 96.72 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 96.69 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.66 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 96.65 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.64 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 96.63 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.61 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 96.6 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.59 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.58 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.56 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 96.56 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.53 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 96.52 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.46 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 96.46 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 96.44 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.44 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 96.43 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 96.38 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.32 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 96.27 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.13 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.06 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.04 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.01 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 95.97 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 95.9 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 95.9 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 95.88 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 95.79 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 95.77 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 95.69 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 95.62 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.57 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 95.49 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 95.36 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.12 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.1 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 95.05 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 95.04 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 94.95 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 94.89 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 94.84 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.79 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 94.69 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 94.56 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 94.54 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 94.16 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 94.16 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 94.02 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 93.98 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 93.97 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 93.85 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 93.83 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 93.63 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 93.58 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 92.98 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 92.9 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 92.87 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 92.8 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 92.79 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 92.72 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 92.6 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 92.55 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 92.5 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 92.44 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 92.26 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 91.68 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 91.41 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 91.15 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 91.06 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 91.02 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 90.61 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 90.38 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 90.04 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 89.97 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 89.86 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 89.4 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 89.31 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 89.31 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 89.29 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 89.26 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 89.03 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 88.99 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 88.99 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 88.9 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 88.89 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 88.85 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 88.46 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 88.43 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 88.41 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 88.07 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 87.39 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 87.11 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 86.86 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 86.53 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 86.16 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 85.95 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 85.9 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 85.39 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 85.16 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 85.1 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 84.84 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 84.61 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 84.39 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 84.2 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 84.14 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 84.05 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 83.63 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 83.59 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 82.74 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 82.54 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 82.12 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 82.1 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 81.42 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 81.1 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 80.81 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 80.43 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 80.13 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-154 Score=1384.14 Aligned_cols=794 Identities=35% Similarity=0.618 Sum_probs=782.2
Q ss_pred CCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcccHHHHHHHhccCCChhhHHHHHHHHHHhCCCCChhHHH
Q 046257 38 SPQRNFVEYNRLLFEYCRDSLHQEALNLFLGIRRLGLPLFGSTLSSVLKTCGCLFDHVFGRQVHCECVKSGFARDVNVST 117 (838)
Q Consensus 38 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 117 (838)
.+.++..++|.++.+|++.|++.+|+.+|+.|.+.|++|+..+|..++++|.+.+.+..|.++|..+.+.+..+++.++|
T Consensus 46 ~~~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n 125 (857)
T PLN03077 46 SSSSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGN 125 (857)
T ss_pred hcccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHH
Confidence 34567888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCChHHHHHHHccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHH
Q 046257 118 SLVDLYMRTNNVEDGRRVFDDMNESNVVSWTSLLSGYARNKMNDRVLELFHRMQVEGIKPNSFTFSTVLGVLADEGIVAT 197 (838)
Q Consensus 118 ~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 197 (838)
+|+.+|+++|+++.|+++|++|++||+++||+||.+|++.|++++|+++|++|...|+.||.+||+.++++|+..+++..
T Consensus 126 ~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~ 205 (857)
T PLN03077 126 AMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLAR 205 (857)
T ss_pred HHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHhHcCCChhHHHHHHhcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHhhhCCCC
Q 046257 198 AVQVHTMVIKNGGEVVTSVCNALISMYLKSKMVRDARAVFDGMEDRDSITWNSMVAGYVTNELHMEAFETFNNMGLAGAE 277 (838)
Q Consensus 198 a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~ 277 (838)
+.++|..+++.|+.||..++|+||++|+++|++++|.++|++|+++|+++||+||.+|++.|++++|+++|++|.+.|+.
T Consensus 206 ~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~ 285 (857)
T PLN03077 206 GREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVD 285 (857)
T ss_pred HHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHHhcccCCCeeehHHHHHHH
Q 046257 278 LTRSTFVSVIKLCATTKELRLARQLHSQVLKNGIDFDHNIRTGLMVAYSKCGKMEDASKIFSMMREMKDVVSWTAMISGH 357 (838)
Q Consensus 278 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~li~~~ 357 (838)
||..||+.++.+|++.|+++.|+++|..+.+.|+.||..+||+|+.+|+++|++++|.++|++|. .+|+++||+||.+|
T Consensus 286 Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-~~d~~s~n~li~~~ 364 (857)
T PLN03077 286 PDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME-TKDAVSWTAMISGY 364 (857)
T ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC-CCCeeeHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999 89999999999999
Q ss_pred HHcCChHHHHHHHHHhhhcCCCCCcccHHHHHhhCCCCChh----HHHHHHHHhhccCCcchhhHHHHHHHHcCCHHHHH
Q 046257 358 LQNGAIDLAVNFFCQMTREGVRPNGFTYSIILTAQPAVSPF----QVHAHIIKTNYEKSFSVGTALLNAYVKKGILDEAA 433 (838)
Q Consensus 358 ~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~----~~~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~ 433 (838)
++.|++++|+++|++|.+.|+.||..||++++.+|++.+++ ++|..+.+.|+.++..++|+|+++|+++|++++|.
T Consensus 365 ~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~ 444 (857)
T PLN03077 365 EKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKAL 444 (857)
T ss_pred HhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999999999999999999999999999988 99999999999999999999999999999999999
Q ss_pred HHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCC
Q 046257 434 KVFELIDEKDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFHACSIKAKLNN 513 (838)
Q Consensus 434 ~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (838)
++|++|.++|+++||+||.+|+++|+.++|+++|++|.. +++||..||+++|.+|++. +.++.++++|..+.+.|+.+
T Consensus 445 ~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~-g~l~~~~~i~~~~~~~g~~~ 522 (857)
T PLN03077 445 EVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARI-GALMCGKEIHAHVLRTGIGF 522 (857)
T ss_pred HHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhh-chHHHhHHHHHHHHHhCCCc
Confidence 999999999999999999999999999999999999986 6999999999999999999 99999999999999999999
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHhc
Q 046257 514 ALCVSSALVTMYSKKGNIESASEVFKRQRKRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGITFIGVITACTH 593 (838)
Q Consensus 514 ~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~ 593 (838)
|..++|+|+++|+|+|++++|.++|+.+ .+|+++||+||.+|+++|+.++|+++|++|.+.|+.||.+||+.+|.+|++
T Consensus 523 ~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~ 601 (857)
T PLN03077 523 DGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSR 601 (857)
T ss_pred cceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhh
Confidence 9999999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHH-------------
Q 046257 594 AGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACR------------- 660 (838)
Q Consensus 594 ~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~------------- 660 (838)
.|++++|.++|+.|.+++|+.|+.+||+||+++|+|+|++++|++++++||++||..+|++|+++|+
T Consensus 602 ~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~ 681 (857)
T PLN03077 602 SGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQ 681 (857)
T ss_pred cChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 9999999999999998899999999999999999999999999999999999999999999999998
Q ss_pred -HhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhhCCCccCCceeEEEECCEEEEEeeCCCCCCChHHHHHHHHHHH
Q 046257 661 -LISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMNDRKVKKEAGYSWIEVKNKTYSFLAGDISHPQSNQIYSKLEELS 739 (838)
Q Consensus 661 -~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~~~~~s~i~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~ 739 (838)
+++++|++++.|++|+|+|+..|+|++|.++|+.|+++|++|+|||||||+++++|.|++||.+||+.++||.+|++|.
T Consensus 682 ~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~ 761 (857)
T PLN03077 682 HIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFY 761 (857)
T ss_pred HHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHH
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCccCCCCcccccCChHHHhhhhhhhhHHHHHHHHhccCCCCCcEEEEecccccCcchhhHHHhhhhhcceEEEe
Q 046257 740 TRLKDAGYKPDTSYVLQDIDDEHKEAILSQHSERLAIAFGLVATPAGAPLQIVKNLRVCGDCHTVIKLISKLERRDIVVR 819 (838)
Q Consensus 740 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~~~~~~~~~~~~~~~~~n~~~c~~ch~~~k~~s~~~~r~~~~r 819 (838)
.+|++.||+||+.++++ +++++|+..+++||||||+|||||+||||+||||+||||||+|||+++||||++++||||||
T Consensus 762 ~~~~~~g~~~~~~~~~~-~~~~~k~~~~~~hse~la~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~r 840 (857)
T PLN03077 762 EKMKASGLAGSESSSMD-EIEVSKDDIFCGHSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVRREISVR 840 (857)
T ss_pred HHHHhCCcCCCcchhcc-ccHHHHHHHHHhccHHHHHHHhhhcCCCCCeEEEeCCCEeCccHHHHHHHHHHHhCeEEEEe
Confidence 99999999999999885 47889999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccccCCccccCCC
Q 046257 820 DTNRFHHFKEGLCSCGD 836 (838)
Q Consensus 820 d~~~~h~~~~g~csc~~ 836 (838)
|++|||||+||+|||||
T Consensus 841 d~~rfh~f~~g~csc~d 857 (857)
T PLN03077 841 DTEQFHHFKDGECSCGD 857 (857)
T ss_pred cCCcceeCCCCcccCCC
Confidence 99999999999999998
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-124 Score=1097.01 Aligned_cols=595 Identities=36% Similarity=0.661 Sum_probs=586.2
Q ss_pred CCCcchHHHHHHHHHhCCChHHHHHHHHHhhhCC-CCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCChhHHHH
Q 046257 242 DRDSITWNSMVAGYVTNELHMEAFETFNNMGLAG-AELTRSTFVSVIKLCATTKELRLARQLHSQVLKNGIDFDHNIRTG 320 (838)
Q Consensus 242 ~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 320 (838)
.++.++|+.+|.+|.+.|++++|+++|+.|...+ +.||..||+.++.+|++.++++.+.++|..|.+.|+.||..+++.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 3577899999999999999999999999998765 789999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCChHHHHHHHHhcccCCCeeehHHHHHHHHHcCChHHHHHHHHHhhhcCCCCCcccHHHHHhhCCCCChh--
Q 046257 321 LMVAYSKCGKMEDASKIFSMMREMKDVVSWTAMISGHLQNGAIDLAVNFFCQMTREGVRPNGFTYSIILTAQPAVSPF-- 398 (838)
Q Consensus 321 Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~-- 398 (838)
|+++|+++|++++|.++|++|+ .||+++||++|.+|++.|++++|+++|++|.+.|+.||..||++++.+|+..+..
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~-~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~ 242 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMP-ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARA 242 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCC-CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHH
Confidence 9999999999999999999999 8999999999999999999999999999999999999999999999999999887
Q ss_pred --HHHHHHHHhhccCCcchhhHHHHHHHHcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCC
Q 046257 399 --QVHAHIIKTNYEKSFSVGTALLNAYVKKGILDEAAKVFELIDEKDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVK 476 (838)
Q Consensus 399 --~~~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 476 (838)
++|..+.+.|+.+|..++|+|+++|+++|++++|.++|++|.++|+++||+||.+|++.|+.++|+++|++|.+.|+.
T Consensus 243 ~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~ 322 (697)
T PLN03081 243 GQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVS 322 (697)
T ss_pred HHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHhhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 046257 477 PNEFTFSSVINACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQRKRDLVSWNSMICGY 556 (838)
Q Consensus 477 p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~ 556 (838)
||..||++++.+|+.. +.++.|+++|..+.+.|+.+|..++|+|+++|+|+|++++|.++|++|.+||+++||+||.+|
T Consensus 323 pd~~t~~~ll~a~~~~-g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y 401 (697)
T PLN03081 323 IDQFTFSIMIRIFSRL-ALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGY 401 (697)
T ss_pred CCHHHHHHHHHHHHhc-cchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHH
Confidence 9999999999999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHhcCCHHHH
Q 046257 557 AQHGHTKKALEVFKEMRRQDLEFDGITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKA 636 (838)
Q Consensus 557 ~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A 636 (838)
+++|+.++|+++|++|.+.|+.||.+||++++.+|++.|++++|.++|+.|.+++|+.|+..||++||++|+|+|++++|
T Consensus 402 ~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA 481 (697)
T PLN03081 402 GNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEA 481 (697)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHH
Confidence 99999999999999999999999999999999999999999999999999998899999999999999999999999999
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHH--------------HhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhhCCCcc
Q 046257 637 MDIINRMPFAASATVWRTVLAACR--------------LISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMNDRKVKK 702 (838)
Q Consensus 637 ~~~~~~m~~~~~~~~w~~ll~~c~--------------~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~ 702 (838)
.++|++||+.|+..+|++|+++|+ +++++|++..+|+.|+++|++.|+|++|.++++.|+++|++|
T Consensus 482 ~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k 561 (697)
T PLN03081 482 YAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSM 561 (697)
T ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCcc
Confidence 999999999999999999999997 678999999999999999999999999999999999999999
Q ss_pred CCceeEEEECCEEEEEeeCCCCCCChHHHHHHHHHHHHHHHHcCccCCCCcccccCChHHHhhhhhhhhHHHHHHHHhcc
Q 046257 703 EAGYSWIEVKNKTYSFLAGDISHPQSNQIYSKLEELSTRLKDAGYKPDTSYVLQDIDDEHKEAILSQHSERLAIAFGLVA 782 (838)
Q Consensus 703 ~~~~s~i~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~~~~~~ 782 (838)
.||||||++++++|.|++||.+||+.++||.+|++|..+|++.||+||+.+++||+++++|+..+++||||||+|||||+
T Consensus 562 ~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~hsekla~a~~l~~ 641 (697)
T PLN03081 562 HPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLIN 641 (697)
T ss_pred CCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccHHHHHHHHHhccHHHHHHhhCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcEEEEecccccCcchhhHHHhhhhhcceEEEecCCcccccCCccccCCCCC
Q 046257 783 TPAGAPLQIVKNLRVCGDCHTVIKLISKLERRDIVVRDTNRFHHFKEGLCSCGDYW 838 (838)
Q Consensus 783 ~~~~~~~~~~~n~~~c~~ch~~~k~~s~~~~r~~~~rd~~~~h~~~~g~csc~~~~ 838 (838)
||||.||||+||||||+|||+|+||||++++|||||||++|||||+||+|||||||
T Consensus 642 ~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d~w 697 (697)
T PLN03081 642 TSEWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697 (697)
T ss_pred CCCCCeEEEecCCEECCCchhhHHHHhhhcceEEEEecCCccccCCCCcccccccC
Confidence 99999999999999999999999999999999999999999999999999999999
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-86 Score=792.45 Aligned_cols=585 Identities=29% Similarity=0.458 Sum_probs=570.2
Q ss_pred chhhHHhhccCCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcccHHHHHHHhccCCChhhHHHHHHHHHHh
Q 046257 28 SKKDQSLFDRSPQRNFVEYNRLLFEYCRDSLHQEALNLFLGIRRLGLPLFGSTLSSVLKTCGCLFDHVFGRQVHCECVKS 107 (838)
Q Consensus 28 ~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 107 (838)
.+.|+++|++|+.||+++||.+|.+|++.|++++|+++|++|...|+.||.+||+.++++|+..+++..++++|..+.+.
T Consensus 137 ~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~ 216 (857)
T PLN03077 137 LVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRF 216 (857)
T ss_pred hHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHc
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChhHHHHHHHHHHhCCChHHHHHHHccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHH
Q 046257 108 GFARDVNVSTSLVDLYMRTNNVEDGRRVFDDMNESNVVSWTSLLSGYARNKMNDRVLELFHRMQVEGIKPNSFTFSTVLG 187 (838)
Q Consensus 108 g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 187 (838)
|+.||+.++|+||.+|+++|++++|+++|++|++||+++||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.
T Consensus 217 g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~ 296 (857)
T PLN03077 217 GFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVIS 296 (857)
T ss_pred CCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHcCCChhHHHHHHhcCCCCCcchHHHHHHHHHhCCChHHHHHH
Q 046257 188 VLADEGIVATAVQVHTMVIKNGGEVVTSVCNALISMYLKSKMVRDARAVFDGMEDRDSITWNSMVAGYVTNELHMEAFET 267 (838)
Q Consensus 188 ~~~~~g~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~l 267 (838)
+|++.|+++.|+++|..+.+.|+.||..+||+||.+|+++|++++|.++|++|..+|+++||+||.+|++.|++++|+++
T Consensus 297 a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~l 376 (857)
T PLN03077 297 ACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALET 376 (857)
T ss_pred HHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHHhcccCCCe
Q 046257 268 FNNMGLAGAELTRSTFVSVIKLCATTKELRLARQLHSQVLKNGIDFDHNIRTGLMVAYSKCGKMEDASKIFSMMREMKDV 347 (838)
Q Consensus 268 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~ 347 (838)
|++|.+.|+.||..||++++.+|++.|+++.|.++|+.+.+.|+.++..++++||++|+++|++++|.++|++|. .+|+
T Consensus 377 f~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~-~~d~ 455 (857)
T PLN03077 377 YALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP-EKDV 455 (857)
T ss_pred HHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCe
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999 8999
Q ss_pred eehHHHHHHHHHcCChHHHHHHHHHhhhcCCCCCcccHHHHHhhCCCCChh----HHHHHHHHhhccCCcchhhHHHHHH
Q 046257 348 VSWTAMISGHLQNGAIDLAVNFFCQMTREGVRPNGFTYSIILTAQPAVSPF----QVHAHIIKTNYEKSFSVGTALLNAY 423 (838)
Q Consensus 348 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~----~~~~~~~~~~~~~~~~~~~~Li~~y 423 (838)
++||+||.+|+++|+.++|+.+|++|.. ++.||..||+++|.+|++.+.+ ++|..+++.|+.++..++|+|+++|
T Consensus 456 vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y 534 (857)
T PLN03077 456 ISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLY 534 (857)
T ss_pred eeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHH
Confidence 9999999999999999999999999985 6999999999999999999988 9999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCChhhHHHHHHHH
Q 046257 424 VKKGILDEAAKVFELIDEKDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFH 503 (838)
Q Consensus 424 ~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~ 503 (838)
+|+|++++|.++|+.+ .+|+++||+||.+|++.|+.++|+++|++|.+.|+.||..||+++|.+|++. |.+++|.+++
T Consensus 535 ~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~-g~v~ea~~~f 612 (857)
T PLN03077 535 VRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRS-GMVTQGLEYF 612 (857)
T ss_pred HHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhc-ChHHHHHHHH
Confidence 9999999999999999 8999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred HHHH-HhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh
Q 046257 504 ACSI-KAKLNNALCVSSALVTMYSKKGNIESASEVFKRQR-KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDG 581 (838)
Q Consensus 504 ~~~~-~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~ 581 (838)
..|. +.|+.|+..+|++++++|+++|++++|.+++++|+ +||..+|++|+.+|..+|+.+.+....+++.+ +.|+.
T Consensus 613 ~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~--l~p~~ 690 (857)
T PLN03077 613 HSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFE--LDPNS 690 (857)
T ss_pred HHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--hCCCC
Confidence 9998 78999999999999999999999999999999997 99999999999999999999999999999988 67875
Q ss_pred -hHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCCch
Q 046257 582 -ITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEH 619 (838)
Q Consensus 582 -~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~ 619 (838)
..|..+.+.|+..|+++++.++.+.|+ +.|+++++..
T Consensus 691 ~~~y~ll~n~ya~~g~~~~a~~vr~~M~-~~g~~k~~g~ 728 (857)
T PLN03077 691 VGYYILLCNLYADAGKWDEVARVRKTMR-ENGLTVDPGC 728 (857)
T ss_pred cchHHHHHHHHHHCCChHHHHHHHHHHH-HcCCCCCCCc
Confidence 557777789999999999999999997 6699887753
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-69 Score=630.01 Aligned_cols=476 Identities=25% Similarity=0.412 Sum_probs=429.1
Q ss_pred CCCCcccHHHHHHHHHccCChHHHHHHHHHHHHcC-CCCCcccHHHHHHHhccCCChhhHHHHHHHHHHhCCCCChhHHH
Q 046257 39 PQRNFVEYNRLLFEYCRDSLHQEALNLFLGIRRLG-LPLFGSTLSSVLKTCGCLFDHVFGRQVHCECVKSGFARDVNVST 117 (838)
Q Consensus 39 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 117 (838)
..++.++|+++|.+|.+.|++.+|+++|+.|...+ +.||..+|+.++.+|++.++++.+.++|..+.+.|+.||+.++|
T Consensus 83 ~~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n 162 (697)
T PLN03081 83 IRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMN 162 (697)
T ss_pred CCCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHH
Confidence 34577899999999999999999999999998864 78999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCChHHHHHHHccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHH
Q 046257 118 SLVDLYMRTNNVEDGRRVFDDMNESNVVSWTSLLSGYARNKMNDRVLELFHRMQVEGIKPNSFTFSTVLGVLADEGIVAT 197 (838)
Q Consensus 118 ~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 197 (838)
.|+.+|+++|++++|+++|++|++||.++||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|..+.
T Consensus 163 ~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~ 242 (697)
T PLN03081 163 RVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARA 242 (697)
T ss_pred HHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHhHcCCChhHHHHHHhcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHhhhCCCC
Q 046257 198 AVQVHTMVIKNGGEVVTSVCNALISMYLKSKMVRDARAVFDGMEDRDSITWNSMVAGYVTNELHMEAFETFNNMGLAGAE 277 (838)
Q Consensus 198 a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~ 277 (838)
++++|..+.+.|+.+|..++|+||++|+++|++++|.++|++|+++|+++||+||.+|++.|++++|+++|++|.+.|+.
T Consensus 243 ~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~ 322 (697)
T PLN03081 243 GQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVS 322 (697)
T ss_pred HHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHHhcccCCCeeehHHHHHHH
Q 046257 278 LTRSTFVSVIKLCATTKELRLARQLHSQVLKNGIDFDHNIRTGLMVAYSKCGKMEDASKIFSMMREMKDVVSWTAMISGH 357 (838)
Q Consensus 278 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~li~~~ 357 (838)
||..||++++.+|++.|+++.|+++|+.|.+.|+.+|..++++||++|+++|++++|.++|++|. .+
T Consensus 323 pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~-~~------------ 389 (697)
T PLN03081 323 IDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP-RK------------ 389 (697)
T ss_pred CCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC-CC------------
Confidence 99999999999999999999999999999999988887777777777777777776666666666 44
Q ss_pred HHcCChHHHHHHHHHhhhcCCCCCcccHHHHHhhCCCCChhHHHHHHHHhhccCCcchhhHHHHHHHHcCCHHHHHHHHH
Q 046257 358 LQNGAIDLAVNFFCQMTREGVRPNGFTYSIILTAQPAVSPFQVHAHIIKTNYEKSFSVGTALLNAYVKKGILDEAAKVFE 437 (838)
Q Consensus 358 ~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~ 437 (838)
T Consensus 390 -------------------------------------------------------------------------------- 389 (697)
T PLN03081 390 -------------------------------------------------------------------------------- 389 (697)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCChhhHHHHHHHHHHHHH-hcCCCchh
Q 046257 438 LIDEKDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFHACSIK-AKLNNALC 516 (838)
Q Consensus 438 ~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 516 (838)
|+++||+||.+|++.|+.++|+++|++|.+.|+.||..||+++|.+|++. |.+++|.+++..|.+ .|+.|+..
T Consensus 390 -----d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~-g~~~~a~~~f~~m~~~~g~~p~~~ 463 (697)
T PLN03081 390 -----NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYS-GLSEQGWEIFQSMSENHRIKPRAM 463 (697)
T ss_pred -----CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHhcCCCCCcc
Confidence 44455555555666666666666666666667777777777777777777 777777777777764 57888888
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhcc
Q 046257 517 VSSALVTMYSKKGNIESASEVFKRQR-KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITACTHA 594 (838)
Q Consensus 517 ~~~~li~~y~k~g~~~~A~~~f~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~ 594 (838)
+|++++++|+++|++++|.++|++|. .|+..+|++|+.+|..+|+.+.|..+++++.+ +.|+ ..+|+.+++.|++.
T Consensus 464 ~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~ 541 (697)
T PLN03081 464 HYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSS 541 (697)
T ss_pred chHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhC
Confidence 88889999999999999999999997 78999999999999999999999999999976 6776 56899999999999
Q ss_pred CCHHHHHHHHHHHHhcCCccCC
Q 046257 595 GLVDEGQQYFDIMVNEHHIYPT 616 (838)
Q Consensus 595 g~~~~a~~~~~~m~~~~~~~p~ 616 (838)
|++++|.++++.|. +.|+...
T Consensus 542 G~~~~A~~v~~~m~-~~g~~k~ 562 (697)
T PLN03081 542 GRQAEAAKVVETLK-RKGLSMH 562 (697)
T ss_pred CCHHHHHHHHHHHH-HcCCccC
Confidence 99999999999997 5577543
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-67 Score=617.39 Aligned_cols=530 Identities=15% Similarity=0.184 Sum_probs=474.3
Q ss_pred CCCCcccHHHHHHHhccCCChhhHHHHHHHHHHhCC-CCChhHHHHHHHHHHhCCChHHHHHHHccCCCCCcchHHHHHH
Q 046257 74 LPLFGSTLSSVLKTCGCLFDHVFGRQVHCECVKSGF-ARDVNVSTSLVDLYMRTNNVEDGRRVFDDMNESNVVSWTSLLS 152 (838)
Q Consensus 74 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~ 152 (838)
..++...|..++..|.+.|+++.|.++++.|.+.|+ .++..+++.++..|.+.|.+++|.++|+.|+.||..+||.+|.
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~ 445 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMS 445 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 355667788888889899999999999999998885 4677788889999999999999999999999999999999999
Q ss_pred HHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHcCCChhH
Q 046257 153 GYARNKMNDRVLELFHRMQVEGIKPNSFTFSTVLGVLADEGIVATAVQVHTMVIKNGGEVVTSVCNALISMYLKSKMVRD 232 (838)
Q Consensus 153 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~ 232 (838)
+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++
T Consensus 446 a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ee 525 (1060)
T PLN03218 446 VCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAK 525 (1060)
T ss_pred HHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCC----CCcchHHHHHHHHHhCCChHHHHHHHHHhhh--CCCCCChhhHHHHHHHHhccCcHHHHHHHHHHH
Q 046257 233 ARAVFDGMED----RDSITWNSMVAGYVTNELHMEAFETFNNMGL--AGAELTRSTFVSVIKLCATTKELRLARQLHSQV 306 (838)
Q Consensus 233 A~~~f~~m~~----~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~--~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 306 (838)
|.++|++|.+ ||.++||+||.+|++.|++++|.++|++|.. .|+.||..||+++|.+|++.|++++|.++|+.|
T Consensus 526 Al~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M 605 (1060)
T PLN03218 526 AFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMI 605 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999999963 7899999999999999999999999999976 578999999999999999999999999999999
Q ss_pred HHhCCCCChhHHHHHHHHHHcCCChHHHHHHHHhccc---CCCeeehHHHHHHHHHcCChHHHHHHHHHhhhcCCCCCcc
Q 046257 307 LKNGIDFDHNIRTGLMVAYSKCGKMEDASKIFSMMRE---MKDVVSWTAMISGHLQNGAIDLAVNFFCQMTREGVRPNGF 383 (838)
Q Consensus 307 ~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ 383 (838)
.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.. .||..+|+++|.+|++.|+.++|.++|++|.+.|+.||..
T Consensus 606 ~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~ 685 (1060)
T PLN03218 606 HEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTV 685 (1060)
T ss_pred HHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH
Confidence 9999999999999999999999999999999999975 5788999999999999999999999999999999999888
Q ss_pred cHHHHHhhCCCCChhHHHHHHHHhhccCCcchhhHHHHHHHHcCCHHHHHHHHHhcC----CCCcchHHHHHHHHHhcCC
Q 046257 384 TYSIILTAQPAVSPFQVHAHIIKTNYEKSFSVGTALLNAYVKKGILDEAAKVFELID----EKDIVAWSAMLAGYAQIGD 459 (838)
Q Consensus 384 t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~ 459 (838)
+| ++||++|+++|++++|.++|++|. .||.++||+||.+|++.|+
T Consensus 686 ty-------------------------------nsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~ 734 (1060)
T PLN03218 686 SY-------------------------------SSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQ 734 (1060)
T ss_pred HH-------------------------------HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCC
Confidence 88 578999999999999999999995 5899999999999999999
Q ss_pred chHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHH----HhcCCHHHHH
Q 046257 460 TEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMY----SKKGNIESAS 535 (838)
Q Consensus 460 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y----~k~g~~~~A~ 535 (838)
+++|+++|++|...|+.||..||++++.+|++. +.++.|.++|..+.+.|+.||..++++|+++| .++++..++.
T Consensus 735 ~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~-G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v 813 (1060)
T PLN03218 735 LPKALEVLSEMKRLGLCPNTITYSILLVASERK-DDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPV 813 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 999999999999999999999999999999999 99999999999999999999999999999874 4455554444
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccC
Q 046257 536 EVFKRQRKRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYP 615 (838)
Q Consensus 536 ~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p 615 (838)
..|+.+...+...|+ ++|+.+|++|++.|+.||.+||+.+|.+++..+..+.+..+++.|. ..+..|
T Consensus 814 ~~f~~g~~~~~n~w~------------~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~-~~~~~~ 880 (1060)
T PLN03218 814 VSFDSGRPQIENKWT------------SWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLG-ISADSQ 880 (1060)
T ss_pred hhhhccccccccchH------------HHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhc-cCCCCc
Confidence 455444444444454 5699999999999999999999999977778888888888887775 446677
Q ss_pred CCchHHHHHHHHHhcCCHHHHHHHHhhC---CCCCCHH
Q 046257 616 TMEHYSCMVDLYSRAGMLEKAMDIINRM---PFAASAT 650 (838)
Q Consensus 616 ~~~~y~~lv~~l~r~G~~~~A~~~~~~m---~~~~~~~ 650 (838)
+..+|+++++.+++. .++|..++++| .+.|+..
T Consensus 881 ~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 881 KQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred chhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 788999999998542 46899999998 3556643
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-64 Score=588.24 Aligned_cols=546 Identities=17% Similarity=0.275 Sum_probs=414.9
Q ss_pred CCChhHHHHHHHHHHhCCChHHHHHHHccCCCCCcc-----hHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHH
Q 046257 110 ARDVNVSTSLVDLYMRTNNVEDGRRVFDDMNESNVV-----SWTSLLSGYARNKMNDRVLELFHRMQVEGIKPNSFTFST 184 (838)
Q Consensus 110 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~-----~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 184 (838)
.++...|..++..++++|++++|.++|++|++++.+ .++.++.+|.+.|..++|+.+|+.|.. ||..||+.
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~ 442 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNM 442 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHH
Confidence 466778889999999999999999999999886655 455677789999999999999999974 99999999
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHcCCChhHHHHHHhcCC----CCCcchHHHHHHHHHhCCC
Q 046257 185 VLGVLADEGIVATAVQVHTMVIKNGGEVVTSVCNALISMYLKSKMVRDARAVFDGME----DRDSITWNSMVAGYVTNEL 260 (838)
Q Consensus 185 ll~~~~~~g~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~----~~~~~~~n~li~~~~~~g~ 260 (838)
+|.+|++.|+++.|.++|+.|.+.|+.||..+|++||.+|+++|++++|.++|++|. .||.++||+||.+|++.|+
T Consensus 443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~ 522 (1060)
T PLN03218 443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ 522 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcC
Confidence 999999999999999999999999999999999999999999999999999999998 4799999999999999999
Q ss_pred hHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHH--hCCCCChhHHHHHHHHHHcCCChHHHHHHH
Q 046257 261 HMEAFETFNNMGLAGAELTRSTFVSVIKLCATTKELRLARQLHSQVLK--NGIDFDHNIRTGLMVAYSKCGKMEDASKIF 338 (838)
Q Consensus 261 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~--~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f 338 (838)
+++|+++|++|...|+.||..||+.+|.+|++.|+++.|.++|++|.+ .|+.||..+|++||.+|+++|++++|.++|
T Consensus 523 ~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf 602 (1060)
T PLN03218 523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY 602 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999986 678999999999999999999999999999
Q ss_pred Hhccc---CCCeeehHHHHHHHHHcCChHHHHHHHHHhhhcCCCCCcccHHHHHhhCCCCChhHHHHHHHHhhccCCcch
Q 046257 339 SMMRE---MKDVVSWTAMISGHLQNGAIDLAVNFFCQMTREGVRPNGFTYSIILTAQPAVSPFQVHAHIIKTNYEKSFSV 415 (838)
Q Consensus 339 ~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~ 415 (838)
+.|.+ .++..+||.+|.+|++.|++++|+++|++|.+.|+.||..||+
T Consensus 603 ~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~Tyn----------------------------- 653 (1060)
T PLN03218 603 QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFS----------------------------- 653 (1060)
T ss_pred HHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH-----------------------------
Confidence 99975 4677899999999999999999999999999999888877773
Q ss_pred hhHHHHHHHHcCCHHHHHHHHHhcCC----CCcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcC
Q 046257 416 GTALLNAYVKKGILDEAAKVFELIDE----KDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTA 491 (838)
Q Consensus 416 ~~~Li~~y~~~g~~~~A~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 491 (838)
+|+++|++.|++++|.++|+.|.+ +|..+|++||.+|++.|++++|.++|++|.+.|+.||..+|++
T Consensus 654 --sLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~------- 724 (1060)
T PLN03218 654 --ALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNA------- 724 (1060)
T ss_pred --HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHH-------
Confidence 455555555555555555555542 3445555555555555555555555555555555555555555
Q ss_pred ChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCChHHHHH
Q 046257 492 PSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQR----KRDLVSWNSMICGYAQHGHTKKALE 567 (838)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~A~~ 567 (838)
||++|++.|++++|.++|++|. .||..+|+++|.+|++.|+.++|.+
T Consensus 725 -----------------------------LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~ 775 (1060)
T PLN03218 725 -----------------------------LITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLD 775 (1060)
T ss_pred -----------------------------HHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 4555555555555555555543 3455555555555555555555555
Q ss_pred HHHHHHHcCCCCChhHHHHHHHHHhc-----------------------cCCHHHHHHHHHHHHhcCCccCCCchHHHHH
Q 046257 568 VFKEMRRQDLEFDGITFIGVITACTH-----------------------AGLVDEGQQYFDIMVNEHHIYPTMEHYSCMV 624 (838)
Q Consensus 568 l~~~m~~~g~~pd~~t~~~ll~a~~~-----------------------~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv 624 (838)
+|++|.+.|+.||..+|++++..|.+ .+..++|..+|++|+ +.|+.|+..+|+.++
T Consensus 776 l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~-~~Gi~Pd~~T~~~vL 854 (1060)
T PLN03218 776 LLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETI-SAGTLPTMEVLSQVL 854 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHH-HCCCCCCHHHHHHHH
Confidence 55555555555555555555544321 233578999999998 669999999999999
Q ss_pred HHHHhcCCHHHHHHHHhhCCC---CCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCc-hHHHHHHHHHhhCCC
Q 046257 625 DLYSRAGMLEKAMDIINRMPF---AASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHW-QERARVRKLMNDRKV 700 (838)
Q Consensus 625 ~~l~r~G~~~~A~~~~~~m~~---~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~-~~a~~~~~~m~~~g~ 700 (838)
..+.+.+..+.+..+++.|.. .|+..+|++|+.+ + |++ ++|..++++|.+.|+
T Consensus 855 ~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g--------------------~---~~~~~~A~~l~~em~~~Gi 911 (1060)
T PLN03218 855 GCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDG--------------------F---GEYDPRAFSLLEEAASLGV 911 (1060)
T ss_pred HHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHh--------------------h---ccChHHHHHHHHHHHHcCC
Confidence 999999999999999998843 3445555555544 4 333 589999999999999
Q ss_pred ccCCceeEEEECCEEEEEeeCCCCCCChHH--HHHHHHHHHHHHHHcC-ccCCCCccccc
Q 046257 701 KKEAGYSWIEVKNKTYSFLAGDISHPQSNQ--IYSKLEELSTRLKDAG-YKPDTSYVLQD 757 (838)
Q Consensus 701 ~~~~~~s~i~~~~~~~~f~~~~~~~~~~~~--i~~~l~~l~~~~~~~g-~~~~~~~~~~~ 757 (838)
.+.....-..+--.+++|- +...+ +...|..|...+. .| ..|.....++.
T Consensus 912 ~p~~~~~~~~~~~d~~~~~------~~aa~~~l~~wl~~~~~~~~-~g~~lp~~~~~~~~ 964 (1060)
T PLN03218 912 VPSVSFKKSPIVIDAEELP------VFAAEVYLLTILKGLKHRLA-AGAKLPNVTILLPT 964 (1060)
T ss_pred CCCcccccCceEEEcccCc------chhHHHHHHHHHHHHHHHHh-ccCcCCcceeeecc
Confidence 8765421112222333332 23333 3445556655553 45 45554444554
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-32 Score=333.60 Aligned_cols=655 Identities=12% Similarity=0.010 Sum_probs=352.4
Q ss_pred CchhhHHhhccCC---CCCcccHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcccHHHHHHHhccCCChhhHHHHHHH
Q 046257 27 YSKKDQSLFDRSP---QRNFVEYNRLLFEYCRDSLHQEALNLFLGIRRLGLPLFGSTLSSVLKTCGCLFDHVFGRQVHCE 103 (838)
Q Consensus 27 ~~~~a~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 103 (838)
..++|...|+... ..+...|..++..+...|++++|...++++.+.. +.+...+......+...|+++.|...+..
T Consensus 208 ~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 286 (899)
T TIGR02917 208 NIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEKHADALLKKA-PNSPLAHYLKALVDFQKKNYEDARETLQD 286 (899)
T ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 3456766666542 2345567777777777788888887777776653 22222222222333455666666666666
Q ss_pred HHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHccCCC---CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChh
Q 046257 104 CVKSGFARDVNVSTSLVDLYMRTNNVEDGRRVFDDMNE---SNVVSWTSLLSGYARNKMNDRVLELFHRMQVEGIKPNSF 180 (838)
Q Consensus 104 ~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 180 (838)
+.+.+.. +...+..+...+...|++++|...|+...+ .+...+..+...+.+.|++++|...++.+.... +.+..
T Consensus 287 ~l~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~ 364 (899)
T TIGR02917 287 ALKSAPE-YLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPA 364 (899)
T ss_pred HHHhCCC-chhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHH
Confidence 6554422 122223334445556666666666655432 233445555556666666666666666655433 22444
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHcCCChhHHHHHHhcCCCC---CcchHHHHHHHHHh
Q 046257 181 TFSTVLGVLADEGIVATAVQVHTMVIKNGGEVVTSVCNALISMYLKSKMVRDARAVFDGMEDR---DSITWNSMVAGYVT 257 (838)
Q Consensus 181 t~~~ll~~~~~~g~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~---~~~~~n~li~~~~~ 257 (838)
.+..+...+...|++++|.+++..+.+.. +.+...+..+...+...|+.++|.+.|+.+.+. +...+..++..+.+
T Consensus 365 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 443 (899)
T TIGR02917 365 ALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLR 443 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHh
Confidence 55555556666666666666666655543 234445555555566666666666666554331 22334445555556
Q ss_pred CCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHH
Q 046257 258 NELHMEAFETFNNMGLAGAELTRSTFVSVIKLCATTKELRLARQLHSQVLKNGIDFDHNIRTGLMVAYSKCGKMEDASKI 337 (838)
Q Consensus 258 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~ 337 (838)
.|++++|.++++++... .+++..++..+...+...|++++|.+.+..+++.. +.+...+..+...+...|++++|.+.
T Consensus 444 ~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~ 521 (899)
T TIGR02917 444 SGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQR 521 (899)
T ss_pred cCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 66666666666555442 22334455555555555566666666665555443 23344455555555556666666665
Q ss_pred HHhccc--CCCeeehHHHHHHHHHcCChHHHHHHHHHhhhcCCCCCcccHHHHHhhCCCCChh----HHHHHHHHhhccC
Q 046257 338 FSMMRE--MKDVVSWTAMISGHLQNGAIDLAVNFFCQMTREGVRPNGFTYSIILTAQPAVSPF----QVHAHIIKTNYEK 411 (838)
Q Consensus 338 f~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~----~~~~~~~~~~~~~ 411 (838)
|+.+.. +.+..+++.+...+.+.|+.++|..+|+++...+ ..+...+..+...+...++. .....+.+ ..+.
T Consensus 522 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~ 599 (899)
T TIGR02917 522 FEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAAD-AAPD 599 (899)
T ss_pred HHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHH-cCCC
Confidence 555532 2234445555555555566666666665554432 11223333444444444444 11111111 1223
Q ss_pred CcchhhHHHHHHHHcCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHH
Q 046257 412 SFSVGTALLNAYVKKGILDEAAKVFELIDE---KDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINA 488 (838)
Q Consensus 412 ~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 488 (838)
+..++..+...|.+.|++++|...|+.+.+ .+...|..+...|.+.|++++|+..|+++.+.. +.+..++..+...
T Consensus 600 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 678 (899)
T TIGR02917 600 SPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQL 678 (899)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 344555555666666666666666655432 233455555555666666666666665555421 1223444444444
Q ss_pred hcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCChHHHH
Q 046257 489 CTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQR--KRDLVSWNSMICGYAQHGHTKKAL 566 (838)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~ 566 (838)
+... +..+.+..++..+.+.. +.+...+..+...|.+.|++++|.+.|+.+. .|+..++..++..|.+.|+.++|.
T Consensus 679 ~~~~-~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 756 (899)
T TIGR02917 679 LLAA-KRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAV 756 (899)
T ss_pred HHHc-CCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHH
Confidence 4444 55555655555555443 2344445555555556666666666655543 333344555555555666666666
Q ss_pred HHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHhcCCHHHHHHHHhhC-CC
Q 046257 567 EVFKEMRRQDLEFDGITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDIINRM-PF 645 (838)
Q Consensus 567 ~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~~m-~~ 645 (838)
+.++++.+.. +.+...+..+...|...|+.++|.++|+.+.+.. +++...+..+..++.+.|+ ++|++.++++ ..
T Consensus 757 ~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~ 832 (899)
T TIGR02917 757 KTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA--PDNAVVLNNLAWLYLELKD-PRALEYAEKALKL 832 (899)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh
Confidence 6666555531 2233445555555555566666666665555321 2234455555555555555 5555555543 12
Q ss_pred CCC-HHHHHHHHHHHH--------------HhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHh
Q 046257 646 AAS-ATVWRTVLAACR--------------LISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMN 696 (838)
Q Consensus 646 ~~~-~~~w~~ll~~c~--------------~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~ 696 (838)
.|+ ...|..+-..+. .++.+|.++.++..++.+|.+.|++++|.+++++|.
T Consensus 833 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 833 APNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 222 222322222211 478899999999999999999999999999999885
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-31 Score=325.51 Aligned_cols=656 Identities=12% Similarity=0.029 Sum_probs=309.3
Q ss_pred hhhHHhhccCCC----CCcccHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcccHHHHHHHhccCCChhhHHHHHHHH
Q 046257 29 KKDQSLFDRSPQ----RNFVEYNRLLFEYCRDSLHQEALNLFLGIRRLGLPLFGSTLSSVLKTCGCLFDHVFGRQVHCEC 104 (838)
Q Consensus 29 ~~a~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 104 (838)
++|..+|..... .....+..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|..++..+
T Consensus 107 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 185 (899)
T TIGR02917 107 QQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAID-PRSLYAKLGLAQLALAENRFDEARALIDEV 185 (899)
T ss_pred HHHHHhhcccccCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 445555544431 122334445555555666666666666555433 223344555555555555666666665555
Q ss_pred HHhCCCCChhHHHHHHHHHHhCCChHHHHHHHccCCC---CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhh
Q 046257 105 VKSGFARDVNVSTSLVDLYMRTNNVEDGRRVFDDMNE---SNVVSWTSLLSGYARNKMNDRVLELFHRMQVEGIKPNSFT 181 (838)
Q Consensus 105 ~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 181 (838)
++.. +.+...+..+...+...|++++|...|+...+ .+..+|..++..+...|++++|...++.+.+.... +...
T Consensus 186 ~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~ 263 (899)
T TIGR02917 186 LTAD-PGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEKHADALLKKAPN-SPLA 263 (899)
T ss_pred HHhC-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchH
Confidence 5432 23444555555555555666666665555432 23345555555555555555555555555443211 1111
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHcCCChhHHHHHHhcCCC---CCcchHHHHHHHHHhC
Q 046257 182 FSTVLGVLADEGIVATAVQVHTMVIKNGGEVVTSVCNALISMYLKSKMVRDARAVFDGMED---RDSITWNSMVAGYVTN 258 (838)
Q Consensus 182 ~~~ll~~~~~~g~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~n~li~~~~~~ 258 (838)
+......+...|++++|...+..+++.+. .+...+..+...+...|++++|...|+...+ .+...+..+...+...
T Consensus 264 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~ 342 (899)
T TIGR02917 264 HYLKALVDFQKKNYEDARETLQDALKSAP-EYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRL 342 (899)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHC
Confidence 11222222344455555555555444431 1122222233334444555555544444322 1223344444444444
Q ss_pred CChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHH
Q 046257 259 ELHMEAFETFNNMGLAGAELTRSTFVSVIKLCATTKELRLARQLHSQVLKNGIDFDHNIRTGLMVAYSKCGKMEDASKIF 338 (838)
Q Consensus 259 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f 338 (838)
|++++|...+.++.... ..+...+..+...+.+.|++++|.++++.+.+.. +.+...+..+...+...|+.++|.+.|
T Consensus 343 g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 420 (899)
T TIGR02917 343 GRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADL 420 (899)
T ss_pred CCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHH
Confidence 55555544444444321 1223334444444444444555544444444432 123334444444444444444444444
Q ss_pred Hhccc--CCCeeehHHHHHHHHHcCChHHHHHHHHHhhhcCCCCCcccHHHHHhhCCCCChh----HHHHHHHHhhccCC
Q 046257 339 SMMRE--MKDVVSWTAMISGHLQNGAIDLAVNFFCQMTREGVRPNGFTYSIILTAQPAVSPF----QVHAHIIKTNYEKS 412 (838)
Q Consensus 339 ~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~----~~~~~~~~~~~~~~ 412 (838)
+.+.. ..+...+..++..+.+.|++++|+.+++++... ..++..++..+...+...++. +.+...++. .+.+
T Consensus 421 ~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~~ 498 (899)
T TIGR02917 421 ETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSI-EPDF 498 (899)
T ss_pred HHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhh-CCCc
Confidence 44331 111222333444444444444444444444432 112233333333333333333 111111111 1112
Q ss_pred cchhhHHHHHHHHcCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHh
Q 046257 413 FSVGTALLNAYVKKGILDEAAKVFELIDE---KDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINAC 489 (838)
Q Consensus 413 ~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 489 (838)
...+..+...+.+.|++++|.+.|+.+.+ .+..++..+...|.+.|+.++|...|.++...+ ..+...+..+...+
T Consensus 499 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 577 (899)
T TIGR02917 499 FPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYY 577 (899)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHH
Confidence 23334444555555555555555554432 233445555555555555555555555554321 12223333444444
Q ss_pred cCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHH
Q 046257 490 TAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKAL 566 (838)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~ 566 (838)
... +..+.+..++..+.+.. +.+...+..+...|.+.|++++|...|+++. +.+...|..+...|.+.|++++|+
T Consensus 578 ~~~-~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 655 (899)
T TIGR02917 578 LGK-GQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAI 655 (899)
T ss_pred HHC-CCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHH
Confidence 444 55555555555444322 2334445555555555555555555555443 223444555555555555555555
Q ss_pred HHHHHHHHcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHhcCCHHHHHHHHhhC-C
Q 046257 567 EVFKEMRRQDLEFD-GITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDIINRM-P 644 (838)
Q Consensus 567 ~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~~m-~ 644 (838)
+.|+++.+ ..|+ ..++..+...+...|++++|.++++.+.+.. .++...+..+...+.+.|++++|.+.++++ .
T Consensus 656 ~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 731 (899)
T TIGR02917 656 TSLKRALE--LKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH--PKAALGFELEGDLYLRQKDYPAAIQAYRKALK 731 (899)
T ss_pred HHHHHHHh--cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 55555554 2333 3444455555555555555555555554221 223334444555555555555555555543 1
Q ss_pred CCCCHHHHHHHHHHHH--------------HhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhhCC
Q 046257 645 FAASATVWRTVLAACR--------------LISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMNDRK 699 (838)
Q Consensus 645 ~~~~~~~w~~ll~~c~--------------~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~~g 699 (838)
..|+..++..+...+. .++.+|+++..+..++.+|...|++++|.+.++++.+..
T Consensus 732 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 800 (899)
T TIGR02917 732 RAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA 800 (899)
T ss_pred hCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC
Confidence 2333333333322221 367789899999999999999999999999999987643
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PF14432 DYW_deaminase: DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-36 Score=257.64 Aligned_cols=106 Identities=65% Similarity=1.094 Sum_probs=99.3
Q ss_pred ceeEEEECCEEEEEeeCCCCCCChHHHHHHHHHHHHHHHHcCccCCCCcccccCChHHH--------hhhhhhhhHHHHH
Q 046257 705 GYSWIEVKNKTYSFLAGDISHPQSNQIYSKLEELSTRLKDAGYKPDTSYVLQDIDDEHK--------EAILSQHSERLAI 776 (838)
Q Consensus 705 ~~s~i~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~~~~~~~~~--------~~~~~~~~e~~a~ 776 (838)
||||+++ |.|++||.+||+. ++..++...||.|++..+.|+++++++ +..+++||||||+
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAi 69 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAI 69 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHH
Confidence 8999988 9999999999998 566778889999999999998888766 5689999999999
Q ss_pred HHHhccCCCCCcEEEEecc-cccCcchhhHHHhhhhhcceEEEecCCcccccC
Q 046257 777 AFGLVATPAGAPLQIVKNL-RVCGDCHTVIKLISKLERRDIVVRDTNRFHHFK 828 (838)
Q Consensus 777 ~~~~~~~~~~~~~~~~~n~-~~c~~ch~~~k~~s~~~~r~~~~rd~~~~h~~~ 828 (838)
||||+++ ||+||+ |||+|||+|+|+||++++|+|+|||++|||||+
T Consensus 70 afgli~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 70 AFGLINT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred Hhcccce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 9999999 899999 999999999999999999999999999999997
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-22 Score=249.47 Aligned_cols=623 Identities=12% Similarity=0.017 Sum_probs=421.3
Q ss_pred CCCCchhhHHhhccCC--CC-CcccHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCccc----------------HHHH
Q 046257 24 SPFYSKKDQSLFDRSP--QR-NFVEYNRLLFEYCRDSLHQEALNLFLGIRRLGLPLFGST----------------LSSV 84 (838)
Q Consensus 24 ~~~~~~~a~~~f~~~~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~----------------~~~l 84 (838)
.....+.|+..+++.. .| +...+..++..+.+.|+.++|...++++.+.. |.+... ....
T Consensus 40 ~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~-P~~~~~~~~~~~~~~~~~~~~~~l~~ 118 (1157)
T PRK11447 40 ATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA-PDSNAYRSSRTTMLLSTPEGRQALQQ 118 (1157)
T ss_pred hhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHhcCCchhhHHHH
Confidence 3455567777777652 23 55667888888899999999999999998765 222222 1223
Q ss_pred HHHhccCCChhhHHHHHHHHHHhCCCCChhH-HHHHHHHHHhCCChHHHHHHHccCCC--C-CcchHHHHHHHHHhCCCc
Q 046257 85 LKTCGCLFDHVFGRQVHCECVKSGFARDVNV-STSLVDLYMRTNNVEDGRRVFDDMNE--S-NVVSWTSLLSGYARNKMN 160 (838)
Q Consensus 85 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~-~~~li~~y~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~ 160 (838)
.+.+...|+.++|.+.+..+++... ++... ...+.......|+.++|++.|+.+.+ | +...+..+...+...|+.
T Consensus 119 A~ll~~~g~~~eA~~~~~~~l~~~p-~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~ 197 (1157)
T PRK11447 119 ARLLATTGRTEEALASYDKLFNGAP-PELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRR 197 (1157)
T ss_pred HHHHHhCCCHHHHHHHHHHHccCCC-CChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCH
Confidence 3456788999999999998876543 33221 11112222345899999999998875 3 445788888899999999
Q ss_pred hHHHHHHHHHHHCCCC----------------CChh---hHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHH
Q 046257 161 DRVLELFHRMQVEGIK----------------PNSF---TFSTVLGVLADEGIVATAVQVHTMVIKNGGEVVTSVCNALI 221 (838)
Q Consensus 161 ~~A~~l~~~m~~~g~~----------------p~~~---t~~~ll~~~~~~g~~~~a~~l~~~~~~~g~~~~~~~~~~li 221 (838)
++|+..|+++.+.... ++.. .+...+..+-.......+...+....+....|+.. ...+.
T Consensus 198 ~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~-~~~~G 276 (1157)
T PRK11447 198 DEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFR-ARAQG 276 (1157)
T ss_pred HHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchH-HHHHH
Confidence 9999999998653210 0000 11111112222223344445554444332223221 22345
Q ss_pred HHhHcCCChhHHHHHHhcCCC---CCcchHHHHHHHHHhCCChHHHHHHHHHhhhCCCCC-Chhh---------HH---H
Q 046257 222 SMYLKSKMVRDARAVFDGMED---RDSITWNSMVAGYVTNELHMEAFETFNNMGLAGAEL-TRST---------FV---S 285 (838)
Q Consensus 222 ~~y~~~g~~~~A~~~f~~m~~---~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t---------~~---~ 285 (838)
..+...|++++|+..|++..+ .+...+..+...|.+.|++++|++.|++..+..... +... |. .
T Consensus 277 ~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~ 356 (1157)
T PRK11447 277 LAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQ 356 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHH
Confidence 567778999999999987654 366778888889999999999999999887653211 1111 11 1
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHHhccc--CCCeeehHHHHHHHHHcCCh
Q 046257 286 VIKLCATTKELRLARQLHSQVLKNGIDFDHNIRTGLMVAYSKCGKMEDASKIFSMMRE--MKDVVSWTAMISGHLQNGAI 363 (838)
Q Consensus 286 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~~li~~~~~~g~~ 363 (838)
.-..+.+.|++++|...++++++.. +.+...+..|...|...|++++|.+.|++... ..+...+..+...|. .++.
T Consensus 357 ~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~ 434 (1157)
T PRK11447 357 QGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQSP 434 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCH
Confidence 2335667889999999999988875 34566777788899999999999999988763 223445666666664 4577
Q ss_pred HHHHHHHHHhhhcCCCCCcccHHHHHhhCCCCChhHHHHHHHHhhccCCcchhhHHHHHHHHcCCHHHHHHHHHhcCCC-
Q 046257 364 DLAVNFFCQMTREGVRPNGFTYSIILTAQPAVSPFQVHAHIIKTNYEKSFSVGTALLNAYVKKGILDEAAKVFELIDEK- 442 (838)
Q Consensus 364 ~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~- 442 (838)
++|+.+++.+.... +.. ...... .+ ....+..+...+...|++++|.+.|++..+.
T Consensus 435 ~~A~~~l~~l~~~~--~~~--~~~~~~-----------------~l--~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~ 491 (1157)
T PRK11447 435 EKALAFIASLSASQ--RRS--IDDIER-----------------SL--QNDRLAQQAEALENQGKWAQAAELQRQRLALD 491 (1157)
T ss_pred HHHHHHHHhCCHHH--HHH--HHHHHH-----------------Hh--hhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 88888887664431 100 000000 00 0112345677888999999999999987643
Q ss_pred --CcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhh-HHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCch----
Q 046257 443 --DIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFT-FSSVINACTAPSAAVEQGKQFHACSIKAKLNNAL---- 515 (838)
Q Consensus 443 --~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 515 (838)
+...+..+...|.+.|++++|+..|+++.+. .|+... +..+....... +..+.+...+..+......++.
T Consensus 492 P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~--~P~~~~~~~a~al~l~~~-~~~~~Al~~l~~l~~~~~~~~~~~l~ 568 (1157)
T PRK11447 492 PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQ--KPNDPEQVYAYGLYLSGS-DRDRAALAHLNTLPRAQWNSNIQELA 568 (1157)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHhC-CCHHHHHHHHHhCCchhcChhHHHHH
Confidence 4456778889999999999999999998763 344322 22221222334 6777777766554332222111
Q ss_pred -----hHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHH
Q 046257 516 -----CVSSALVTMYSKKGNIESASEVFKRQRKRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVIT 589 (838)
Q Consensus 516 -----~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~ 589 (838)
.....+.+.|...|+.++|.++++. .+.+...+..+...|.+.|+.++|++.|++..+ ..|+ ...+..+..
T Consensus 569 ~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~--~~P~~~~a~~~la~ 645 (1157)
T PRK11447 569 QRLQSDQVLETANRLRDSGKEAEAEALLRQ-QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLT--REPGNADARLGLIE 645 (1157)
T ss_pred HHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 1223456778899999999999984 344666778899999999999999999999999 5676 567888999
Q ss_pred HHhccCCHHHHHHHHHHHHhcCCccCC-CchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCC
Q 046257 590 ACTHAGLVDEGQQYFDIMVNEHHIYPT-MEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHD 668 (838)
Q Consensus 590 a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~ 668 (838)
.+...|+.++|.+.++...+ ..|+ ...+..+..++.+.|++++|.++++++ ++..|++
T Consensus 646 ~~~~~g~~~eA~~~l~~ll~---~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~a------------------l~~~~~~ 704 (1157)
T PRK11447 646 VDIAQGDLAAARAQLAKLPA---TANDSLNTQRRVALAWAALGDTAAAQRTFNRL------------------IPQAKSQ 704 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHhc---cCCCChHHHHHHHHHHHhCCCHHHHHHHHHHH------------------hhhCccC
Confidence 99999999999999998763 3443 455677888999999999999999987 3444433
Q ss_pred c------hhHHHHHHHHHhcCCchHHHHHHHHHh-hCCCc
Q 046257 669 S------AIYVLLSNMYAATGHWQERARVRKLMN-DRKVK 701 (838)
Q Consensus 669 ~------~~y~~l~~~y~~~g~~~~a~~~~~~m~-~~g~~ 701 (838)
+ ..+..++.+|...|++++|...++... ..|+.
T Consensus 705 ~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~ 744 (1157)
T PRK11447 705 PPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGIT 744 (1157)
T ss_pred CcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Confidence 3 356677999999999999999988774 33443
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.9e-20 Score=229.24 Aligned_cols=583 Identities=10% Similarity=0.022 Sum_probs=421.7
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCCCCCcccHHHHHHHhccCCChhhHHHHHHHHHHhCCCCChhH-------------
Q 046257 49 LLFEYCRDSLHQEALNLFLGIRRLGLPLFGSTLSSVLKTCGCLFDHVFGRQVHCECVKSGFARDVNV------------- 115 (838)
Q Consensus 49 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~------------- 115 (838)
..+.....++.+.|...++++.... +.++..+..+...+...|+.++|.+.++.+.+..+. +...
T Consensus 34 q~~~~~~~~~~d~a~~~l~kl~~~~-p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~-~~~~~~~~~~~~~~~~~ 111 (1157)
T PRK11447 34 QVRLGEATHREDLVRQSLYRLELID-PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPD-SNAYRSSRTTMLLSTPE 111 (1157)
T ss_pred HHHHHHhhCChHHHHHHHHHHHccC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHhcCCc
Confidence 3455668899999999999988653 446677888888899999999999999999887643 2222
Q ss_pred ---HHHHHHHHHhCCChHHHHHHHccCCCCC--cchHH--HHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 046257 116 ---STSLVDLYMRTNNVEDGRRVFDDMNESN--VVSWT--SLLSGYARNKMNDRVLELFHRMQVEGIKPNSFTFSTVLGV 188 (838)
Q Consensus 116 ---~~~li~~y~~~g~~~~A~~~f~~m~~~~--~~~~~--~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~ 188 (838)
...+...+.+.|++++|.+.|+...+.+ ..... .........|++++|++.|+++.+... -+...+..+...
T Consensus 112 ~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P-~~~~~~~~LA~l 190 (1157)
T PRK11447 112 GRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYP-GNTGLRNTLALL 190 (1157)
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 1233446888999999999999876532 22111 111222346899999999999988642 245567788888
Q ss_pred HhcCCChHHHHHHHHHHHHhCCCC-------------------chhHHHHHHHHhHcCCChhHHHHHHhcCCC--CCcc-
Q 046257 189 LADEGIVATAVQVHTMVIKNGGEV-------------------VTSVCNALISMYLKSKMVRDARAVFDGMED--RDSI- 246 (838)
Q Consensus 189 ~~~~g~~~~a~~l~~~~~~~g~~~-------------------~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~~~~- 246 (838)
+...|+.++|.+.++.+.+..... ....+...+..+-.....+.|...+..... .|..
T Consensus 191 l~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~ 270 (1157)
T PRK11447 191 LFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAF 270 (1157)
T ss_pred HHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcch
Confidence 889999999999999987642110 001111222222222334455555544322 1111
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHhhhCCCCC-ChhhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCh-hHH------
Q 046257 247 TWNSMVAGYVTNELHMEAFETFNNMGLAGAEL-TRSTFVSVIKLCATTKELRLARQLHSQVLKNGIDFDH-NIR------ 318 (838)
Q Consensus 247 ~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~-~~~------ 318 (838)
........+...|++++|+..|++..+. .| +...+..+..++.+.|++++|...++..++....... ..+
T Consensus 271 ~~~~~G~~~~~~g~~~~A~~~l~~aL~~--~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~ 348 (1157)
T PRK11447 271 RARAQGLAAVDSGQGGKAIPELQQAVRA--NPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKV 348 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHh
Confidence 1123356677899999999999998875 34 5667888888999999999999999999887543221 111
Q ss_pred ------HHHHHHHHcCCChHHHHHHHHhccc--CCCeeehHHHHHHHHHcCChHHHHHHHHHhhhcCCCCCcccHHHHHh
Q 046257 319 ------TGLMVAYSKCGKMEDASKIFSMMRE--MKDVVSWTAMISGHLQNGAIDLAVNFFCQMTREGVRPNGFTYSIILT 390 (838)
Q Consensus 319 ------~~Li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~ 390 (838)
..+...+.+.|++++|...|++... +.+...+..+...+...|++++|++.|++..+. .|+....
T Consensus 349 ~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~--~p~~~~a----- 421 (1157)
T PRK11447 349 NRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRM--DPGNTNA----- 421 (1157)
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHH-----
Confidence 2234567789999999999998864 335566777888999999999999999998874 3433211
Q ss_pred hCCCCChhHHHHHHHHhhccCCcchhhHHHHHHHHcCCHHHHHHHHHhcCCCC------------cchHHHHHHHHHhcC
Q 046257 391 AQPAVSPFQVHAHIIKTNYEKSFSVGTALLNAYVKKGILDEAAKVFELIDEKD------------IVAWSAMLAGYAQIG 458 (838)
Q Consensus 391 a~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~------------~~~~~~li~~~~~~g 458 (838)
...+...|. .++.++|...++.+.... ...+..+...+...|
T Consensus 422 -------------------------~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g 475 (1157)
T PRK11447 422 -------------------------VRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQG 475 (1157)
T ss_pred -------------------------HHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCC
Confidence 123445553 457888988887765321 224556778888999
Q ss_pred CchHHHHHHHHhhcCCCCCCH-hhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 046257 459 DTEGAVKIYRQLTSEGVKPNE-FTFSSVINACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEV 537 (838)
Q Consensus 459 ~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~ 537 (838)
++++|++.|++..+. .|+. ..+..+...+... +..+.+...+..+++... .+.....++.-.+.+.|+.++|...
T Consensus 476 ~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~-G~~~~A~~~l~~al~~~P-~~~~~~~a~al~l~~~~~~~~Al~~ 551 (1157)
T PRK11447 476 KWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQA-GQRSQADALMRRLAQQKP-NDPEQVYAYGLYLSGSDRDRAALAH 551 (1157)
T ss_pred CHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 999999999999874 5654 3445555666677 999999999999887543 3444455555567889999999999
Q ss_pred HHhcCCC----CHH---------HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHHH
Q 046257 538 FKRQRKR----DLV---------SWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGITFIGVITACTHAGLVDEGQQYF 604 (838)
Q Consensus 538 f~~~~~~----~~~---------~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~ 604 (838)
++.+... +.. .+..+...+...|+.++|+++++. ..++...+..+...+...|+.++|...|
T Consensus 552 l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y 626 (1157)
T PRK11447 552 LNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAY 626 (1157)
T ss_pred HHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHH
Confidence 9988632 111 123456778899999999999872 2334556777888899999999999999
Q ss_pred HHHHhcCCccC-CCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcC
Q 046257 605 DIMVNEHHIYP-TMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATG 683 (838)
Q Consensus 605 ~~m~~~~~~~p-~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g 683 (838)
+...+. .| +...+..++.+|...|++++|++.+++. ++..|+++..+..++.+|...|
T Consensus 627 ~~al~~---~P~~~~a~~~la~~~~~~g~~~eA~~~l~~l------------------l~~~p~~~~~~~~la~~~~~~g 685 (1157)
T PRK11447 627 QRVLTR---EPGNADARLGLIEVDIAQGDLAAARAQLAKL------------------PATANDSLNTQRRVALAWAALG 685 (1157)
T ss_pred HHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH------------------hccCCCChHHHHHHHHHHHhCC
Confidence 999843 45 4677888999999999999999999977 5678889999999999999999
Q ss_pred CchHHHHHHHHHhhCC
Q 046257 684 HWQERARVRKLMNDRK 699 (838)
Q Consensus 684 ~~~~a~~~~~~m~~~g 699 (838)
++++|.++++.+....
T Consensus 686 ~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 686 DTAAAQRTFNRLIPQA 701 (1157)
T ss_pred CHHHHHHHHHHHhhhC
Confidence 9999999999987643
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.5e-19 Score=212.41 Aligned_cols=599 Identities=11% Similarity=0.013 Sum_probs=329.3
Q ss_pred cHHHHHHHHH--ccCChHHHHHHHHHHHHcCCCCCcccHHHHHHHhccCCChhhHHHHHHHHHHhCCCCChhHHHHHHHH
Q 046257 45 EYNRLLFEYC--RDSLHQEALNLFLGIRRLGLPLFGSTLSSVLKTCGCLFDHVFGRQVHCECVKSGFARDVNVSTSLVDL 122 (838)
Q Consensus 45 ~~~~li~~~~--~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 122 (838)
++..+..++. ..|++++|+..|++..+.. |-+..++..+.+++...|+.++|....+..++... .|...+..| .
T Consensus 44 ~~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~d-P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP-~n~~~~~~L-a- 119 (987)
T PRK09782 44 IYPRLDKALKAQKNNDEATAIREFEYIHQQV-PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHP-GDARLERSL-A- 119 (987)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-ccHHHHHHH-H-
Confidence 4444554433 4599999999999998765 44567788899999999999999999988887653 455555544 2
Q ss_pred HHhCCChHHHHHHHccCCC--CC-cchHHHHHHH--------HHhCCCchHHHHHHHHHHHCCCCCChhhHHHH-HHHHh
Q 046257 123 YMRTNNVEDGRRVFDDMNE--SN-VVSWTSLLSG--------YARNKMNDRVLELFHRMQVEGIKPNSFTFSTV-LGVLA 190 (838)
Q Consensus 123 y~~~g~~~~A~~~f~~m~~--~~-~~~~~~li~~--------~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l-l~~~~ 190 (838)
..++.++|..+++++.. |+ ...+..+... |.+. ++|.+.++ .......|+..+.... .+.+.
T Consensus 120 --~i~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~ 193 (987)
T PRK09782 120 --AIPVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAI 193 (987)
T ss_pred --HhccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHH
Confidence 22889999999999864 33 3344444443 6665 44554444 4333344555555555 88999
Q ss_pred cCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHc-CCChhHHHHHHhcCCCCCcchHHHHHHHHHhCCChHHHHHHHH
Q 046257 191 DEGIVATAVQVHTMVIKNGGEVVTSVCNALISMYLK-SKMVRDARAVFDGMEDRDSITWNSMVAGYVTNELHMEAFETFN 269 (838)
Q Consensus 191 ~~g~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~-~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~l~~ 269 (838)
..++++++..++..+.+.+ +.+......|-.+|.. .++ +.|..++....+.|...+..+...|.+.|+.++|.++++
T Consensus 194 ~l~dw~~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~ 271 (987)
T PRK09782 194 YLKQWSQADTLYNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLI 271 (987)
T ss_pred HHhCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999999999999997 4455556777778887 467 888888776555688899999999999999999999999
Q ss_pred HhhhCCCC-CChhhHHHHHHHHh------------------------------ccCcHHHHHHHHHHHHHhCCCCChhHH
Q 046257 270 NMGLAGAE-LTRSTFVSVIKLCA------------------------------TTKELRLARQLHSQVLKNGIDFDHNIR 318 (838)
Q Consensus 270 ~m~~~g~~-p~~~t~~~ll~~~~------------------------------~~~~~~~a~~~~~~~~~~g~~~~~~~~ 318 (838)
++...-.. |...++.-++.-.. +.++++.++++. .+.|....
T Consensus 272 ~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~- 344 (987)
T PRK09782 272 ENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLL------ATLPANEM- 344 (987)
T ss_pred hCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHh------cCCCcchH-
Confidence 98655322 54444443332221 222222111110 11222221
Q ss_pred HHHHHHHH-cCCChHHHHHHHHhcccC--CCeeehHHHHHHHHHcCChHHHHHHHHHhhhc-C-CCCCcccHHHHHhhCC
Q 046257 319 TGLMVAYS-KCGKMEDASKIFSMMREM--KDVVSWTAMISGHLQNGAIDLAVNFFCQMTRE-G-VRPNGFTYSIILTAQP 393 (838)
Q Consensus 319 ~~Li~~y~-~~g~~~~A~~~f~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g-~~pd~~t~~~ll~a~~ 393 (838)
..+-.++. ..+...++.+....|-.. .+....--+--...++|+.++|..+|++.... + ..++.....-+...+.
T Consensus 345 ~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 424 (987)
T PRK09782 345 LEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLE 424 (987)
T ss_pred HHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHH
Confidence 11111111 113333333333333211 12222222233345667777777777776552 1 1111111112233332
Q ss_pred CCChhHHHHHHHHhhccCCcchhhHHHHHHHHcCCHH---HHHHHHHhcCC---C--CcchHHHHHHHHHhcCCchHHHH
Q 046257 394 AVSPFQVHAHIIKTNYEKSFSVGTALLNAYVKKGILD---EAAKVFELIDE---K--DIVAWSAMLAGYAQIGDTEGAVK 465 (838)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~---~A~~~f~~~~~---~--~~~~~~~li~~~~~~g~~~~A~~ 465 (838)
..+.+.-...+...+-..+.... ..-.|+.. .+...+..... . +...|..+...+.. +++++|+.
T Consensus 425 ~~~~~~~~~~~~~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~ 497 (987)
T PRK09782 425 SHPYLATPAKVAILSKPLPLAEQ------RQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALY 497 (987)
T ss_pred hCCcccchHHHHHhccccccchh------HHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHH
Confidence 22221000000000000000000 00011111 11111111111 1 33455555555554 56666666
Q ss_pred HHHHhhcCCCCCCHhhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC
Q 046257 466 IYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQRKRD 545 (838)
Q Consensus 466 l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~ 545 (838)
.|.+.... .|+......+..++... +..+.+...+..+... +++...+..+...+.+.|++++|...|++....+
T Consensus 498 a~~~Al~~--~Pd~~~~L~lA~al~~~-Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~ 572 (987)
T PRK09782 498 AWLQAEQR--QPDAWQHRAVAYQAYQV-EDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG 572 (987)
T ss_pred HHHHHHHh--CCchHHHHHHHHHHHHC-CCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 55555442 34443322222222334 6666666666554333 2222333444555666666666666666554222
Q ss_pred HH---HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCC-CchHH
Q 046257 546 LV---SWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPT-MEHYS 621 (838)
Q Consensus 546 ~~---~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~ 621 (838)
.. .+..+.......|++++|+..|++..+ ..|+...+..+..++.+.|+.++|...++.... +.|+ ...+.
T Consensus 573 P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~---l~Pd~~~a~~ 647 (987)
T PRK09782 573 LGDNALYWWLHAQRYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAALE---LEPNNSNYQA 647 (987)
T ss_pred CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHH
Confidence 21 122222223334667777777766666 456655666666666666777777776666652 2343 34555
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhh
Q 046257 622 CMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMND 697 (838)
Q Consensus 622 ~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~ 697 (838)
.+...|...|++++|++.+++. ++++|+++.++..++.+|...|+.++|...+++..+
T Consensus 648 nLG~aL~~~G~~eeAi~~l~~A------------------L~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~ 705 (987)
T PRK09782 648 ALGYALWDSGDIAQSREMLERA------------------HKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVID 705 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHH------------------HHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 5666666667777776666665 566666777777777777777777777766666654
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.8e-18 Score=199.84 Aligned_cols=610 Identities=10% Similarity=-0.026 Sum_probs=422.3
Q ss_pred hhHHhhccCC--CC-CcccHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcccHHHHHHHhccCCChhhHHHHHHHHHH
Q 046257 30 KDQSLFDRSP--QR-NFVEYNRLLFEYCRDSLHQEALNLFLGIRRLGLPLFGSTLSSVLKTCGCLFDHVFGRQVHCECVK 106 (838)
Q Consensus 30 ~a~~~f~~~~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 106 (838)
.|...|...- .| +...+..|...|...|++++|+..+++..+. .|+...|..++... ++...|..+++++.+
T Consensus 62 ~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~La~i---~~~~kA~~~ye~l~~ 136 (987)
T PRK09782 62 TAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERSLAAI---PVEVKSVTTVEELLA 136 (987)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHh---ccChhHHHHHHHHHH
Confidence 5666666542 23 4667888999999999999999999998875 34544454444333 888899999999988
Q ss_pred hCCCCChhHHHHHHHH--------HHhCCChHHHHHHHccCCCCC--cchHH-HHHHHHHhCCCchHHHHHHHHHHHCCC
Q 046257 107 SGFARDVNVSTSLVDL--------YMRTNNVEDGRRVFDDMNESN--VVSWT-SLLSGYARNKMNDRVLELFHRMQVEGI 175 (838)
Q Consensus 107 ~g~~~~~~~~~~li~~--------y~~~g~~~~A~~~f~~m~~~~--~~~~~-~li~~~~~~g~~~~A~~l~~~m~~~g~ 175 (838)
..+ .+..++..+... |.+.+....|.+ .....|+ ..+.. .+...|.+.|++++|++++.++.+.++
T Consensus 137 ~~P-~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~p 213 (987)
T PRK09782 137 QQK-ACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNT 213 (987)
T ss_pred hCC-CChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCC
Confidence 763 445555555555 787766667776 3333343 44344 448999999999999999999999864
Q ss_pred CCChhhHHHHHHHHhc-CCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHcCCChhHHHHHHhcCCC-----CCcchHH
Q 046257 176 KPNSFTFSTVLGVLAD-EGIVATAVQVHTMVIKNGGEVVTSVCNALISMYLKSKMVRDARAVFDGMED-----RDSITWN 249 (838)
Q Consensus 176 ~p~~~t~~~ll~~~~~-~g~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~-----~~~~~~n 249 (838)
. +..-...+-.++.. .++ +.+..++.. .+..+..+..++...|.+.|+.++|.+++.+++. ++..+|-
T Consensus 214 l-~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~ 287 (987)
T PRK09782 214 L-SAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWL 287 (987)
T ss_pred C-CHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHH
Confidence 3 33335556566666 355 667777543 3346888999999999999999999999998874 2222221
Q ss_pred H------------------------------HHHHHHhCCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHh--ccCcHH
Q 046257 250 S------------------------------MVAGYVTNELHMEAFETFNNMGLAGAELTRSTFVSVIKLCA--TTKELR 297 (838)
Q Consensus 250 ~------------------------------li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~--~~~~~~ 297 (838)
- .+..+.+.+.++-+.++. ...|.... ..++... ..+...
T Consensus 288 ~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~--~~~r~~~~~~~~~~~ 359 (987)
T PRK09782 288 YLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLL------ATLPANEM--LEERYAVSVATRNKA 359 (987)
T ss_pred HHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHh------cCCCcchH--HHHHHhhccccCchh
Confidence 1 244556666666555441 13444333 2333332 336666
Q ss_pred HHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHHhccc-CCCe----eehHHHHHHHHHcCC---hHHHHHH
Q 046257 298 LARQLHSQVLKNGIDFDHNIRTGLMVAYSKCGKMEDASKIFSMMRE-MKDV----VSWTAMISGHLQNGA---IDLAVNF 369 (838)
Q Consensus 298 ~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~-~~~~----~~~~~li~~~~~~g~---~~~A~~l 369 (838)
++.+.+..+.+.. +-+....--+.-...+.|+.++|.++|...-. .++. ..-+-++..|.+.+. ..+++.+
T Consensus 360 ~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l 438 (987)
T PRK09782 360 EALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAIL 438 (987)
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHh
Confidence 7777777776653 33555555556667789999999999998874 2222 234567788888877 4444444
Q ss_pred HHHhhhcCCCCCcccHHHHHhhCCCCChhHHHHHHHHhhc---cC--CcchhhHHHHHHHHcCCHHHHHHHHHhcCCCCc
Q 046257 370 FCQMTREGVRPNGFTYSIILTAQPAVSPFQVHAHIIKTNY---EK--SFSVGTALLNAYVKKGILDEAAKVFELIDEKDI 444 (838)
Q Consensus 370 ~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~---~~--~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~ 444 (838)
-..+-. .+-..++...... +-........+ ++ +...+..+...+.. ++.++|...|.+......
T Consensus 439 ~~~~~~-------~~~~~~~~~~~~~---~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~P 507 (987)
T PRK09782 439 SKPLPL-------AEQRQWQSQLPGI---ADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQP 507 (987)
T ss_pred cccccc-------chhHHHHhhhhhh---hhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCC
Confidence 322211 1111111111100 00011111111 12 44556667777766 889999997777655434
Q ss_pred chHHHHHHHH--HhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHH
Q 046257 445 VAWSAMLAGY--AQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALV 522 (838)
Q Consensus 445 ~~~~~li~~~--~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 522 (838)
..|+.+..++ .+.|++++|...|+++... .|+...+..+..++... ++.+.+...+...++.. +.+...+..+.
T Consensus 508 d~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~-Gd~~eA~~~l~qAL~l~-P~~~~l~~~La 583 (987)
T PRK09782 508 DAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAA-GNGAARDRWLQQAEQRG-LGDNALYWWLH 583 (987)
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHC-CCHHHHHHHHHHHHhcC-CccHHHHHHHH
Confidence 4566655555 5899999999999998653 45544555555556666 89999999999888765 22333333343
Q ss_pred HHHHhcCCHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh-hHHHHHHHHHhccCCHHH
Q 046257 523 TMYSKKGNIESASEVFKRQR--KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDG-ITFIGVITACTHAGLVDE 599 (838)
Q Consensus 523 ~~y~k~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~ 599 (838)
....+.|++++|...|++.. .|+...|..+...+.+.|+.++|++.|++..+ ..|+. ..+..+..++...|+.++
T Consensus 584 ~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~--l~Pd~~~a~~nLG~aL~~~G~~ee 661 (987)
T PRK09782 584 AQRYIPGQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALE--LEPNNSNYQAALGYALWDSGDIAQ 661 (987)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHH
Confidence 44445699999999999887 57788999999999999999999999999999 67875 466777778999999999
Q ss_pred HHHHHHHHHhcCCccC-CCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHH
Q 046257 600 GQQYFDIMVNEHHIYP-TMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNM 678 (838)
Q Consensus 600 a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~ 678 (838)
|...++...+ +.| +...+..+..++.+.|++++|+..+++. ++++|++..+....+++
T Consensus 662 Ai~~l~~AL~---l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~A------------------l~l~P~~a~i~~~~g~~ 720 (987)
T PRK09782 662 SREMLERAHK---GLPDDPALIRQLAYVNQRLDDMAATQHYARLV------------------IDDIDNQALITPLTPEQ 720 (987)
T ss_pred HHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH------------------HhcCCCCchhhhhhhHH
Confidence 9999999884 345 4567888999999999999999999987 78999999999999999
Q ss_pred HHhcCCchHHHHHHHHHhhCCC
Q 046257 679 YAATGHWQERARVRKLMNDRKV 700 (838)
Q Consensus 679 y~~~g~~~~a~~~~~~m~~~g~ 700 (838)
.....+++.|.+-++..-.-.+
T Consensus 721 ~~~~~~~~~a~~~~~r~~~~~~ 742 (987)
T PRK09782 721 NQQRFNFRRLHEEVGRRWTFSF 742 (987)
T ss_pred HHHHHHHHHHHHHHHHHhhcCc
Confidence 9999999999887776654433
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.1e-17 Score=169.67 Aligned_cols=444 Identities=17% Similarity=0.201 Sum_probs=297.6
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHcC
Q 046257 148 TSLLSGYARNKMNDRVLELFHRMQVEGIKPNSFTFSTVLGVLADEGIVATAVQVHTMVIKNGGEVVTSVCNALISMYLKS 227 (838)
Q Consensus 148 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~ 227 (838)
..|..-..+.|++.+|.+.-...-+++ ..+..+...+-..+....+++...+--...++.. +.-..+|+.+.+.+-..
T Consensus 52 l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 52 LELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKER 129 (966)
T ss_pred HHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHHh
Confidence 444555567788888877554433322 1222233333333444444444333333333322 23345566666666666
Q ss_pred CChhHHHHHHhcCCC---CCcchHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHH
Q 046257 228 KMVRDARAVFDGMED---RDSITWNSMVAGYVTNELHMEAFETFNNMGLAGAELTRSTFVSVIKLCATTKELRLARQLHS 304 (838)
Q Consensus 228 g~~~~A~~~f~~m~~---~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 304 (838)
|++++|...+..+.+ ..+..|-.+..++...|+.+.|.+.|.+..+ +.|+.+...+
T Consensus 130 g~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s------------------- 188 (966)
T KOG4626|consen 130 GQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARS------------------- 188 (966)
T ss_pred chHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhc-------------------
Confidence 666666666665543 2345566666666666666666666655543 2333332211
Q ss_pred HHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHHhccc-CC-CeeehHHHHHHHHHcCChHHHHHHHHHhhhcCCCCCc
Q 046257 305 QVLKNGIDFDHNIRTGLMVAYSKCGKMEDASKIFSMMRE-MK-DVVSWTAMISGHLQNGAIDLAVNFFCQMTREGVRPNG 382 (838)
Q Consensus 305 ~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~-~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~ 382 (838)
-+-......|++.+|...+.+..+ .| =.+.|+.|...+-.+|+...|+..|++... +.|+.
T Consensus 189 ---------------~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk--ldP~f 251 (966)
T KOG4626|consen 189 ---------------DLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK--LDPNF 251 (966)
T ss_pred ---------------chhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhc--CCCcc
Confidence 122222334555555555444332 22 235677777777777777777777777655 23331
Q ss_pred ccHHHHHhhCCCCChhHHHHHHHHhhccCCcchhhHHHHHHHHcCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCC
Q 046257 383 FTYSIILTAQPAVSPFQVHAHIIKTNYEKSFSVGTALLNAYVKKGILDEAAKVFELIDE---KDIVAWSAMLAGYAQIGD 459 (838)
Q Consensus 383 ~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~ 459 (838)
. ..|-.|...|...+.++.|...+..... ...+.+..|...|-..|.
T Consensus 252 ~------------------------------dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ 301 (966)
T KOG4626|consen 252 L------------------------------DAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGL 301 (966)
T ss_pred h------------------------------HHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEecccc
Confidence 1 1122455666666677777666654432 244566667777777888
Q ss_pred chHHHHHHHHhhcCCCCCCH-hhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 046257 460 TEGAVKIYRQLTSEGVKPNE-FTFSSVINACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVF 538 (838)
Q Consensus 460 ~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f 538 (838)
.+-|+..|++..+ +.|+- ..|+.+-.|.... |++.+|...+...+.... ......+-|...|...|.+++|..+|
T Consensus 302 ldlAI~~Ykral~--~~P~F~~Ay~NlanALkd~-G~V~ea~~cYnkaL~l~p-~hadam~NLgni~~E~~~~e~A~~ly 377 (966)
T KOG4626|consen 302 LDLAIDTYKRALE--LQPNFPDAYNNLANALKDK-GSVTEAVDCYNKALRLCP-NHADAMNNLGNIYREQGKIEEATRLY 377 (966)
T ss_pred HHHHHHHHHHHHh--cCCCchHHHhHHHHHHHhc-cchHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhccchHHHHHH
Confidence 8888888887776 45663 5677777777777 888888888777776542 34556677889999999999999999
Q ss_pred HhcC--CCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh-hHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcc
Q 046257 539 KRQR--KRD-LVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDG-ITFIGVITACTHAGLVDEGQQYFDIMVNEHHIY 614 (838)
Q Consensus 539 ~~~~--~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~ 614 (838)
.... .|+ ....|.|...|-++|+.++|+..|++.+. ++|+. ..|+.+...+-..|++++|.+.+...+ .+.
T Consensus 378 ~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI---~~n 452 (966)
T KOG4626|consen 378 LKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAI---QIN 452 (966)
T ss_pred HHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHH---hcC
Confidence 8776 333 45789999999999999999999999999 99994 689999999999999999999999888 466
Q ss_pred CCC-chHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHH
Q 046257 615 PTM-EHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQER 688 (838)
Q Consensus 615 p~~-~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a 688 (838)
|.. +..+.|..+|-.+|++.+|++-+++. +.++|+-+.+|..|.-.+.--..|.+-
T Consensus 453 Pt~AeAhsNLasi~kDsGni~~AI~sY~~a------------------LklkPDfpdA~cNllh~lq~vcdw~D~ 509 (966)
T KOG4626|consen 453 PTFAEAHSNLASIYKDSGNIPEAIQSYRTA------------------LKLKPDFPDAYCNLLHCLQIVCDWTDY 509 (966)
T ss_pred cHHHHHHhhHHHHhhccCCcHHHHHHHHHH------------------HccCCCCchhhhHHHHHHHHHhcccch
Confidence 764 57888999999999999999999987 899999999999999888888888883
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.8e-18 Score=188.66 Aligned_cols=301 Identities=16% Similarity=0.182 Sum_probs=228.6
Q ss_pred HHHHcCCChHHHHHHHHhccc--CCCeeehHHHHHHHHHcCChHHHHHHHHHhhhcCCCCCcccHHHHHhhCCCCChhHH
Q 046257 323 VAYSKCGKMEDASKIFSMMRE--MKDVVSWTAMISGHLQNGAIDLAVNFFCQMTREGVRPNGFTYSIILTAQPAVSPFQV 400 (838)
Q Consensus 323 ~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~ 400 (838)
..+...|++++|...|.++.+ +.+..+|..+...+.+.|++++|..+++.+...+..++....
T Consensus 43 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~--------------- 107 (389)
T PRK11788 43 LNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRL--------------- 107 (389)
T ss_pred HHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHH---------------
Confidence 345667788888888888763 223446777888888888888888888888764322111110
Q ss_pred HHHHHHhhccCCcchhhHHHHHHHHcCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCC
Q 046257 401 HAHIIKTNYEKSFSVGTALLNAYVKKGILDEAAKVFELIDE---KDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKP 477 (838)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 477 (838)
.++..+...|.+.|++++|..+|+.+.+ .+..+++.++..|.+.|++++|++.|+++.+.+..+
T Consensus 108 -------------~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 174 (389)
T PRK11788 108 -------------LALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDS 174 (389)
T ss_pred -------------HHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCc
Confidence 1235678888899999999999988865 356688899999999999999999999987653222
Q ss_pred CHhhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHH
Q 046257 478 NEFTFSSVINACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMIC 554 (838)
Q Consensus 478 ~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~ 554 (838)
+.... ...+..+...|.+.|++++|.+.|+++. +.+...|..+..
T Consensus 175 ~~~~~--------------------------------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 222 (389)
T PRK11788 175 LRVEI--------------------------------AHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGD 222 (389)
T ss_pred chHHH--------------------------------HHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHH
Confidence 11100 0123345667889999999999999876 335668888999
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCC--hhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHhcCC
Q 046257 555 GYAQHGHTKKALEVFKEMRRQDLEFD--GITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGM 632 (838)
Q Consensus 555 ~~~~~g~~~~A~~l~~~m~~~g~~pd--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~ 632 (838)
.|.+.|++++|+++|+++.+. .|+ ..++..+..++...|++++|.+.++.+.+. .|+...+..++.++.+.|+
T Consensus 223 ~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~~la~~~~~~g~ 297 (389)
T PRK11788 223 LALAQGDYAAAIEALERVEEQ--DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE---YPGADLLLALAQLLEEQEG 297 (389)
T ss_pred HHHHCCCHHHHHHHHHHHHHH--ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCchHHHHHHHHHHHhCC
Confidence 999999999999999999984 454 456788999999999999999999999843 5777778889999999999
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHh---cCCchHHHHHHHHHhhCCCccCCcee
Q 046257 633 LEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAA---TGHWQERARVRKLMNDRKVKKEAGYS 707 (838)
Q Consensus 633 ~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~---~g~~~~a~~~~~~m~~~g~~~~~~~s 707 (838)
+++|.++++++ ++..|++.. +..+...+.. .|+.+++..+++.|.++++++.|.+.
T Consensus 298 ~~~A~~~l~~~------------------l~~~P~~~~-~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~ 356 (389)
T PRK11788 298 PEAAQALLREQ------------------LRRHPSLRG-FHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRYR 356 (389)
T ss_pred HHHHHHHHHHH------------------HHhCcCHHH-HHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCEE
Confidence 99999999987 455665443 3333333432 56999999999999999999999744
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.6e-17 Score=179.84 Aligned_cols=296 Identities=14% Similarity=0.091 Sum_probs=179.9
Q ss_pred HHhCCChHHHHHHHHHhhhCCCCCC-hhhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCC---hhHHHHHHHHHHcCCC
Q 046257 255 YVTNELHMEAFETFNNMGLAGAELT-RSTFVSVIKLCATTKELRLARQLHSQVLKNGIDFD---HNIRTGLMVAYSKCGK 330 (838)
Q Consensus 255 ~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~Li~~y~~~g~ 330 (838)
+...|++++|++.|.++.+. .|+ ..++..+...+...|+++.|..+++.+++.+..++ ..++..+...|.+.|+
T Consensus 45 ~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKV--DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHhcCChHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 44556666666666666654 232 33555566666666666666666666665432111 2456677778888888
Q ss_pred hHHHHHHHHhccc--CCCeeehHHHHHHHHHcCChHHHHHHHHHhhhcCCCCCcccHHHHHhhCCCCChhHHHHHHHHhh
Q 046257 331 MEDASKIFSMMRE--MKDVVSWTAMISGHLQNGAIDLAVNFFCQMTREGVRPNGFTYSIILTAQPAVSPFQVHAHIIKTN 408 (838)
Q Consensus 331 ~~~A~~~f~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~ 408 (838)
+++|.++|+++.+ ..+..+++.++..+.+.|++++|.+.++++...+..++.....
T Consensus 123 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~---------------------- 180 (389)
T PRK11788 123 LDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIA---------------------- 180 (389)
T ss_pred HHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHH----------------------
Confidence 8888888888763 2455678888888888888888888888887654322211110
Q ss_pred ccCCcchhhHHHHHHHHcCCHHHHHHHHHhcCCC---CcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHH
Q 046257 409 YEKSFSVGTALLNAYVKKGILDEAAKVFELIDEK---DIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSV 485 (838)
Q Consensus 409 ~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 485 (838)
..+..+...+.+.|++++|.+.|+++.+. +...+..+...|.+.|++++|+++|+++...+ |+..
T Consensus 181 -----~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--p~~~----- 248 (389)
T PRK11788 181 -----HFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQD--PEYL----- 248 (389)
T ss_pred -----HHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--hhhH-----
Confidence 01234666777888888888888876542 34567778888888888888888888887532 2211
Q ss_pred HHHhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCChH
Q 046257 486 INACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQR--KRDLVSWNSMICGYAQHGHTK 563 (838)
Q Consensus 486 l~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~ 563 (838)
..+++.++..|.+.|++++|.+.++++. .|+...++.++..+.+.|+++
T Consensus 249 -----------------------------~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~ 299 (389)
T PRK11788 249 -----------------------------SEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPE 299 (389)
T ss_pred -----------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHH
Confidence 1122334445555666666666665543 344444455566666666666
Q ss_pred HHHHHHHHHHHcCCCCChhHHHHHHHHHhc---cCCHHHHHHHHHHHHhcCCccCCCc
Q 046257 564 KALEVFKEMRRQDLEFDGITFIGVITACTH---AGLVDEGQQYFDIMVNEHHIYPTME 618 (838)
Q Consensus 564 ~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~---~g~~~~a~~~~~~m~~~~~~~p~~~ 618 (838)
+|+++|+++.+ ..|+..++..++..+.. .|+.+++...++.|. +.++.|++.
T Consensus 300 ~A~~~l~~~l~--~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~-~~~~~~~p~ 354 (389)
T PRK11788 300 AAQALLREQLR--RHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLV-GEQLKRKPR 354 (389)
T ss_pred HHHHHHHHHHH--hCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHH-HHHHhCCCC
Confidence 66666666655 35665555555554432 335566666666665 334555554
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.4e-14 Score=159.29 Aligned_cols=621 Identities=14% Similarity=0.096 Sum_probs=401.8
Q ss_pred hhHHhhccCCCCCcccHHHHH---HHHHccCC--hHHHHHHHHHHHHcCCCCCcccHHHHHHHhc--cCCChhhHHHHHH
Q 046257 30 KDQSLFDRSPQRNFVEYNRLL---FEYCRDSL--HQEALNLFLGIRRLGLPLFGSTLSSVLKTCG--CLFDHVFGRQVHC 102 (838)
Q Consensus 30 ~a~~~f~~~~~~~~~~~~~li---~~~~~~g~--~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~--~~~~~~~a~~~~~ 102 (838)
.|..+|+....-+...+..++ ..|...|. .+.|...|...++.. +++ ....+.+||. ..+++..+..+|.
T Consensus 112 ~at~~~~~A~ki~m~~~~~l~~~~~~~l~~~~~~~~~A~a~F~~Vl~~s-p~N--il~LlGkA~i~ynkkdY~~al~yyk 188 (1018)
T KOG2002|consen 112 KATLLFDLADKIDMYEDSHLLVQRGFLLLEGDKSMDDADAQFHFVLKQS-PDN--ILALLGKARIAYNKKDYRGALKYYK 188 (1018)
T ss_pred HHHHHhhHHHHhhccCcchhhhhhhhhhhcCCccHHHHHHHHHHHHhhC-Ccc--hHHHHHHHHHHhccccHHHHHHHHH
Confidence 455666654333333333222 12333443 478888888887653 222 3445666664 5568999999999
Q ss_pred HHHHhC--CCCChhHHHHHHHHHHhCCChHHHHHHHccCCCCCcchHHHHHHHHH------hCCCchHHHHHHHHHHHCC
Q 046257 103 ECVKSG--FARDVNVSTSLVDLYMRTNNVEDGRRVFDDMNESNVVSWTSLLSGYA------RNKMNDRVLELFHRMQVEG 174 (838)
Q Consensus 103 ~~~~~g--~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~------~~g~~~~A~~l~~~m~~~g 174 (838)
.++... ..+|+.+. +-..+.++|+.+.|...|....+-|+..-++++.... ....+..++.++...-...
T Consensus 189 ~al~inp~~~aD~rIg--ig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n 266 (1018)
T KOG2002|consen 189 KALRINPACKADVRIG--IGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN 266 (1018)
T ss_pred HHHhcCcccCCCccch--hhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc
Confidence 876654 34555543 3356678899999999999888766655555444321 1223445566665554332
Q ss_pred CCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCC--chhHHHHHHHHhHcCCChhHHHHHHhcCCCC--C--cchH
Q 046257 175 IKPNSFTFSTVLGVLADEGIVATAVQVHTMVIKNGGEV--VTSVCNALISMYLKSKMVRDARAVFDGMEDR--D--SITW 248 (838)
Q Consensus 175 ~~p~~~t~~~ll~~~~~~g~~~~a~~l~~~~~~~g~~~--~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~--~--~~~~ 248 (838)
.-|+...+.|.+-+.-.|++..+..+...++...... -...|--+..+|-..|+++.|...|.+..+. | +..+
T Consensus 267 -~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~ 345 (1018)
T KOG2002|consen 267 -NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPL 345 (1018)
T ss_pred -CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccc
Confidence 2366777888888888999999999988888765211 1234666888999999999999999876542 2 3445
Q ss_pred HHHHHHHHhCCChHHHHHHHHHhhhCCCCCCh-hhHHHHHHHHhccC----cHHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 046257 249 NSMVAGYVTNELHMEAFETFNNMGLAGAELTR-STFVSVIKLCATTK----ELRLARQLHSQVLKNGIDFDHNIRTGLMV 323 (838)
Q Consensus 249 n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~~~~~~~----~~~~a~~~~~~~~~~g~~~~~~~~~~Li~ 323 (838)
--+...|...|+.+.+...|+..... .||. .|...+-..|+..+ ..+.|..+.....+.- +.|...|-.+..
T Consensus 346 ~GlgQm~i~~~dle~s~~~fEkv~k~--~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laq 422 (1018)
T KOG2002|consen 346 VGLGQMYIKRGDLEESKFCFEKVLKQ--LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQ 422 (1018)
T ss_pred cchhHHHHHhchHHHHHHHHHHHHHh--CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHH
Confidence 56788899999999999999988765 4544 45555555555543 4566777777766654 456777777777
Q ss_pred HHHcCCChH------HHHHHHHhcccCCCeeehHHHHHHHHHcCChHHHHHHHHHhhhc---CCCCCcc-cHHHHHhhCC
Q 046257 324 AYSKCGKME------DASKIFSMMREMKDVVSWTAMISGHLQNGAIDLAVNFFCQMTRE---GVRPNGF-TYSIILTAQP 393 (838)
Q Consensus 324 ~y~~~g~~~------~A~~~f~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~pd~~-t~~~ll~a~~ 393 (838)
+|-...-+. .|..++........+...|.+.......|.+++|...|.+.... -..+|.. +.
T Consensus 423 l~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~-------- 494 (1018)
T KOG2002|consen 423 LLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKST-------- 494 (1018)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccc--------
Confidence 776554432 33333333221455667899999999999999999999988764 2333432 11
Q ss_pred CCChhHHHHHHHHhhccCCcchhhHHHHHHHHcCCHHHHHHHHHhcCCCCcchHHHHHHHHHh-------cCCchHHHHH
Q 046257 394 AVSPFQVHAHIIKTNYEKSFSVGTALLNAYVKKGILDEAAKVFELIDEKDIVAWSAMLAGYAQ-------IGDTEGAVKI 466 (838)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~-------~g~~~~A~~l 466 (838)
++.+.-.|...+-..++.+.|.+.+..+....+ ..|.+|.+ .+...+|..+
T Consensus 495 ------------------~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp----~YId~ylRl~~ma~~k~~~~ea~~~ 552 (1018)
T KOG2002|consen 495 ------------------NLTLKYNLARLLEELHDTEVAEEMYKSILKEHP----GYIDAYLRLGCMARDKNNLYEASLL 552 (1018)
T ss_pred ------------------hhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCc----hhHHHHHHhhHHHHhccCcHHHHHH
Confidence 011112344455566777888888877765322 12333333 3566778888
Q ss_pred HHHhhcC-CCCCCHhhHHHHHHHhcCChhhHHHHHHHHHHHHHhc-CCCchhHHHHHHHHHH------------hcCCHH
Q 046257 467 YRQLTSE-GVKPNEFTFSSVINACTAPSAAVEQGKQFHACSIKAK-LNNALCVSSALVTMYS------------KKGNIE 532 (838)
Q Consensus 467 ~~~m~~~-g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~li~~y~------------k~g~~~ 532 (838)
+++.... .-.|+..++..-+ +-.. .....++.-+..+.+.- -.+|+...-+|.+.|. ..+..+
T Consensus 553 lk~~l~~d~~np~arsl~G~~--~l~k-~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~ 629 (1018)
T KOG2002|consen 553 LKDALNIDSSNPNARSLLGNL--HLKK-SEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQE 629 (1018)
T ss_pred HHHHHhcccCCcHHHHHHHHH--HHhh-hhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHH
Confidence 8776552 3445555543211 1111 23333333333333321 1256666666666553 235678
Q ss_pred HHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 046257 533 SASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGITFIGVITACTHAGLVDEGQQYFDIMVN 609 (838)
Q Consensus 533 ~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 609 (838)
.|.++|.++. ++|...-|.+...++..|++.+|..+|.+.++... -+.-+|..+...|...|++-.|.+.|+...+
T Consensus 630 KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lk 708 (1018)
T KOG2002|consen 630 KALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLK 708 (1018)
T ss_pred HHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999998776 56888889999999999999999999999999753 3455788999999999999999999999888
Q ss_pred cCCccCCCchHHHHHHHHHhcCCHHHHHHHHhhC-CCCCC--HHHHHHHHHHHH----HhccCCCCchhHHHHHHHHHhc
Q 046257 610 EHHIYPTMEHYSCMVDLYSRAGMLEKAMDIINRM-PFAAS--ATVWRTVLAACR----LISLQPHDSAIYVLLSNMYAAT 682 (838)
Q Consensus 610 ~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~~m-~~~~~--~~~w~~ll~~c~----~~~l~P~~~~~y~~l~~~y~~~ 682 (838)
++.-.-+.+...+|..++.++|.+.+|.+..... ...|. .+.++..+-.-+ ++..++ ..+=.+....
T Consensus 709 kf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k------~t~eev~~a~ 782 (1018)
T KOG2002|consen 709 KFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEK------RTLEEVLEAV 782 (1018)
T ss_pred HhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhccc------ccHHHHHHHH
Confidence 8876677889999999999999999999887654 12222 234444333322 333333 2233345566
Q ss_pred CCchHHHHHHHHHhhCC
Q 046257 683 GHWQERARVRKLMNDRK 699 (838)
Q Consensus 683 g~~~~a~~~~~~m~~~g 699 (838)
+..+.|.++|..|...+
T Consensus 783 ~~le~a~r~F~~ls~~~ 799 (1018)
T KOG2002|consen 783 KELEEARRLFTELSKNG 799 (1018)
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 77788888888887654
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.5e-14 Score=157.40 Aligned_cols=627 Identities=12% Similarity=0.088 Sum_probs=405.9
Q ss_pred CCcccHHHHHHHHHccCChHHHHHHHHHHHHcC------CCCCcccHHHHHHHhc-cCC------C-----hhhHHHHHH
Q 046257 41 RNFVEYNRLLFEYCRDSLHQEALNLFLGIRRLG------LPLFGSTLSSVLKTCG-CLF------D-----HVFGRQVHC 102 (838)
Q Consensus 41 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g------~~~~~~~~~~ll~~~~-~~~------~-----~~~a~~~~~ 102 (838)
.....|..+...|...|..++.+.+++.-...+ +..+...-..++.+|- ..+ + ...+..+|.
T Consensus 39 a~le~wi~~AleYy~~gk~eefi~iLE~g~~~~~~~y~d~~~~~~~a~~~laay~s~~a~kek~~~~k~e~~~~at~~~~ 118 (1018)
T KOG2002|consen 39 APLEAWIEIALEYYKQGKTEEFIKILESGLIDANEEYADVKSDQMKALDILAAYYSQLAMKEKKKDEKDELFDKATLLFD 118 (1018)
T ss_pred CchhHHHHHHHHHHhcccHHHHHHHHHhhhhcccchhcchHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhh
Confidence 345689999999999999999998887654111 1111111111222221 111 0 111222222
Q ss_pred HHHHhCCCCCh-hHHHHHHHHHHhCCC--hHHHHHHHccCCCCCcc-hHHHHHHHH--HhCCCchHHHHHHHHHHHC--C
Q 046257 103 ECVKSGFARDV-NVSTSLVDLYMRTNN--VEDGRRVFDDMNESNVV-SWTSLLSGY--ARNKMNDRVLELFHRMQVE--G 174 (838)
Q Consensus 103 ~~~~~g~~~~~-~~~~~li~~y~~~g~--~~~A~~~f~~m~~~~~~-~~~~li~~~--~~~g~~~~A~~l~~~m~~~--g 174 (838)
.+-+-....++ .++.. ..|...|+ ++.|...|....+.++. ..-.+.+++ ...|++..|+.+|...... .
T Consensus 119 ~A~ki~m~~~~~l~~~~--~~~l~~~~~~~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~ 196 (1018)
T KOG2002|consen 119 LADKIDMYEDSHLLVQR--GFLLLEGDKSMDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPA 196 (1018)
T ss_pred HHHHhhccCcchhhhhh--hhhhhcCCccHHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcc
Confidence 21111111111 11111 11223343 48898888887652221 122333333 4568999999999996543 3
Q ss_pred CCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHcCC---ChhHHHHHHhcCC---CCCcchH
Q 046257 175 IKPNSFTFSTVLGVLADEGIVATAVQVHTMVIKNGGEVVTSVCNALISMYLKSK---MVRDARAVFDGME---DRDSITW 248 (838)
Q Consensus 175 ~~p~~~t~~~ll~~~~~~g~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g---~~~~A~~~f~~m~---~~~~~~~ 248 (838)
..||.. ..+-.++.+.++.+.|+..|.++++.. +.++.++-.|--.-.... .+..+..++...- ..|++..
T Consensus 197 ~~aD~r--Igig~Cf~kl~~~~~a~~a~~ralqLd-p~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l 273 (1018)
T KOG2002|consen 197 CKADVR--IGIGHCFWKLGMSEKALLAFERALQLD-PTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVAL 273 (1018)
T ss_pred cCCCcc--chhhhHHHhccchhhHHHHHHHHHhcC-hhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHH
Confidence 445543 233356678999999999999998875 222323222222222222 2344444444332 3588999
Q ss_pred HHHHHHHHhCCChHHHHHHHHHhhhCCC-C-CChhhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 046257 249 NSMVAGYVTNELHMEAFETFNNMGLAGA-E-LTRSTFVSVIKLCATTKELRLARQLHSQVLKNGIDFDHNIRTGLMVAYS 326 (838)
Q Consensus 249 n~li~~~~~~g~~~~A~~l~~~m~~~g~-~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~ 326 (838)
|.|..-|.-.|++..++.+...+..... . .-...|-.+-+++-..|+++.|...|-+..+......+..+..|..+|.
T Consensus 274 ~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i 353 (1018)
T KOG2002|consen 274 NHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYI 353 (1018)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHH
Confidence 9999999999999999999988876431 1 1223577888999999999999999988887653333445567889999
Q ss_pred cCCChHHHHHHHHhccc--CCCeeehHHHHHHHHHcC----ChHHHHHHHHHhhhcCCCCCcccHHHHHhhCCCCChh--
Q 046257 327 KCGKMEDASKIFSMMRE--MKDVVSWTAMISGHLQNG----AIDLAVNFFCQMTREGVRPNGFTYSIILTAQPAVSPF-- 398 (838)
Q Consensus 327 ~~g~~~~A~~~f~~~~~--~~~~~~~~~li~~~~~~g----~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~-- 398 (838)
+.|+++.+...|+.+.. +.+..+.-.+...|+..+ ..+.|..++.+..+.- .-|...|..+-..+-.....
T Consensus 354 ~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~s 432 (1018)
T KOG2002|consen 354 KRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWAS 432 (1018)
T ss_pred HhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHHH
Confidence 99999999999998864 234455556666677665 3455666655555432 22333443333332222211
Q ss_pred -----HHHHHHHHhhccCCcchhhHHHHHHHHcCCHHHHHHHHHhcCCC-------Ccc------hHHHHHHHHHhcCCc
Q 046257 399 -----QVHAHIIKTNYEKSFSVGTALLNAYVKKGILDEAAKVFELIDEK-------DIV------AWSAMLAGYAQIGDT 460 (838)
Q Consensus 399 -----~~~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~-------~~~------~~~~li~~~~~~g~~ 460 (838)
.....+...+-...+.+.|.+...+...|.+++|...|+..... |.. +--.+...+-..+++
T Consensus 433 L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~ 512 (1018)
T KOG2002|consen 433 LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDT 512 (1018)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhh
Confidence 23334455566688889999999999999999999999876532 221 122245555667899
Q ss_pred hHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHh
Q 046257 461 EGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKR 540 (838)
Q Consensus 461 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~ 540 (838)
+.|.+.|..+.+. .|+-++-..=+.+.+...+.+..+...+..+.... ..++.+++-+.+.|.+...+..|.+-|..
T Consensus 513 ~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~ 589 (1018)
T KOG2002|consen 513 EVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFET 589 (1018)
T ss_pred hHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHH
Confidence 9999999999874 57766544444344444356666766666665533 45667777777789998888888886654
Q ss_pred cC-----CCCHHHHHHHHHHHHH------------cCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHhccCCHHHHHH
Q 046257 541 QR-----KRDLVSWNSMICGYAQ------------HGHTKKALEVFKEMRRQDLEF-DGITFIGVITACTHAGLVDEGQQ 602 (838)
Q Consensus 541 ~~-----~~~~~~~~~li~~~~~------------~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~ 602 (838)
+. .+|..+.-+|.+.|.+ .+..++|+++|.+.++ ..| |-..-+++.-.+++.|++.+|..
T Consensus 590 i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~yAANGIgiVLA~kg~~~~A~d 667 (1018)
T KOG2002|consen 590 ILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR--NDPKNMYAANGIGIVLAEKGRFSEARD 667 (1018)
T ss_pred HHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh--cCcchhhhccchhhhhhhccCchHHHH
Confidence 43 3466666666665542 2457899999999998 455 45677788888899999999999
Q ss_pred HHHHHHhcCCccCCCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhcc-CCCCchhHHHHHHHHHh
Q 046257 603 YFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISL-QPHDSAIYVLLSNMYAA 681 (838)
Q Consensus 603 ~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l-~P~~~~~y~~l~~~y~~ 681 (838)
+|.+.++.. .-...+|-.+...|..+|++-.|.++++..- -.. .-+++.....|+.++.+
T Consensus 668 IFsqVrEa~--~~~~dv~lNlah~~~e~~qy~~AIqmYe~~l-----------------kkf~~~~~~~vl~~Lara~y~ 728 (1018)
T KOG2002|consen 668 IFSQVREAT--SDFEDVWLNLAHCYVEQGQYRLAIQMYENCL-----------------KKFYKKNRSEVLHYLARAWYE 728 (1018)
T ss_pred HHHHHHHHH--hhCCceeeeHHHHHHHHHHHHHHHHHHHHHH-----------------HHhcccCCHHHHHHHHHHHHH
Confidence 999998542 2455678889999999999999999998651 111 23477888899999999
Q ss_pred cCCchHHHHHHHHHhh
Q 046257 682 TGHWQERARVRKLMND 697 (838)
Q Consensus 682 ~g~~~~a~~~~~~m~~ 697 (838)
.|+|.+|.+.......
T Consensus 729 ~~~~~eak~~ll~a~~ 744 (1018)
T KOG2002|consen 729 AGKLQEAKEALLKARH 744 (1018)
T ss_pred hhhHHHHHHHHHHHHH
Confidence 9999999888776654
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.2e-15 Score=170.93 Aligned_cols=245 Identities=10% Similarity=0.080 Sum_probs=197.4
Q ss_pred cCCHHHHHHHHHhcCCC------CcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCH-hhHHHHHHHhcCChhhHHH
Q 046257 426 KGILDEAAKVFELIDEK------DIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNE-FTFSSVINACTAPSAAVEQ 498 (838)
Q Consensus 426 ~g~~~~A~~~f~~~~~~------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~~ 498 (838)
.+.+++|.+.|+...+. +...|+.+...+...|++++|+..|++..+. .|+. ..|..+-..+... +.++.
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~-g~~~e 383 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLEL-GDPDK 383 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHC-CCHHH
Confidence 47889999999877642 3456888888899999999999999998863 5653 4555555566666 89999
Q ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 046257 499 GKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQ 575 (838)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 575 (838)
+...+..+++.. +.+..++..+...|...|++++|...|++.. +.+...|..+...+.+.|++++|+..|++.++
T Consensus 384 A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~- 461 (615)
T TIGR00990 384 AEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKK- 461 (615)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-
Confidence 999999887764 4467788889999999999999999999876 44677888899999999999999999999988
Q ss_pred CCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCC-c-hH------HHHHHHHHhcCCHHHHHHHHhhCCCC
Q 046257 576 DLEFD-GITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTM-E-HY------SCMVDLYSRAGMLEKAMDIINRMPFA 646 (838)
Q Consensus 576 g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~-~y------~~lv~~l~r~G~~~~A~~~~~~m~~~ 646 (838)
..|+ ...+..+..++...|++++|.+.|+.... +.|+. . +. +.....+...|++++|.+++++.
T Consensus 462 -~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~---l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kA--- 534 (615)
T TIGR00990 462 -NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE---LEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKA--- 534 (615)
T ss_pred -hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHh---cCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHH---
Confidence 4666 56788888899999999999999999873 33432 1 11 11222344579999999999986
Q ss_pred CCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhh
Q 046257 647 ASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMND 697 (838)
Q Consensus 647 ~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~ 697 (838)
++++|++..++..|+.+|...|++++|.+.+++..+
T Consensus 535 ---------------l~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 535 ---------------LIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred ---------------HhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 678898999999999999999999999999998765
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.72 E-value=9.1e-15 Score=152.43 Aligned_cols=353 Identities=15% Similarity=0.193 Sum_probs=251.0
Q ss_pred hhHHHHHHHHHHcCCChHHHHHHHHhccc--CCCeeehHHHHHHHHHcCChHHHHHHHHHhhhcCCCCCcccHH----HH
Q 046257 315 HNIRTGLMVAYSKCGKMEDASKIFSMMRE--MKDVVSWTAMISGHLQNGAIDLAVNFFCQMTREGVRPNGFTYS----II 388 (838)
Q Consensus 315 ~~~~~~Li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~----~l 388 (838)
..+|..+.+.+-..|++++|..+++.+.+ ...+..|..+..++...|+.+.|.+.|.+..+ +.|+.+... .+
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lgnL 193 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLGNL 193 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchhHH
Confidence 44555566666666666666666666543 23445566666666666666666666665554 334333221 22
Q ss_pred HhhCCCCChhHHHHHHHHhhccCC-cchhhHHHHHHHHcCCHHHHHHHHHhcCCCCc---chHHHHHHHHHhcCCchHHH
Q 046257 389 LTAQPAVSPFQVHAHIIKTNYEKS-FSVGTALLNAYVKKGILDEAAKVFELIDEKDI---VAWSAMLAGYAQIGDTEGAV 464 (838)
Q Consensus 389 l~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~g~~~~A~ 464 (838)
+++..+.... ..+++..-...|. ..+|+.|...+-..|++..|...|++...-|. ..|-.|...|-..+.+++|+
T Consensus 194 lka~Grl~ea-~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Av 272 (966)
T KOG4626|consen 194 LKAEGRLEEA-KACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAV 272 (966)
T ss_pred HHhhcccchh-HHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHH
Confidence 2222111111 1111111112222 34567778888888999999998888765443 46777888888888899999
Q ss_pred HHHHHhhcCCCCCCHh-hHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC-
Q 046257 465 KIYRQLTSEGVKPNEF-TFSSVINACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQR- 542 (838)
Q Consensus 465 ~l~~~m~~~g~~p~~~-t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~- 542 (838)
..|.+... .+|+.. .+..+-..|... |.++.+...+...+.... .=+..|+-|..++-..|++.+|...+.+..
T Consensus 273 s~Y~rAl~--lrpn~A~a~gNla~iYyeq-G~ldlAI~~Ykral~~~P-~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~ 348 (966)
T KOG4626|consen 273 SCYLRALN--LRPNHAVAHGNLACIYYEQ-GLLDLAIDTYKRALELQP-NFPDAYNNLANALKDKGSVTEAVDCYNKALR 348 (966)
T ss_pred HHHHHHHh--cCCcchhhccceEEEEecc-ccHHHHHHHHHHHHhcCC-CchHHHhHHHHHHHhccchHHHHHHHHHHHH
Confidence 88887765 467754 344444445555 888888888888776542 225567788888888899999999988765
Q ss_pred --CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCC-c
Q 046257 543 --KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTM-E 618 (838)
Q Consensus 543 --~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~ 618 (838)
..-..+.+.|...|...|..++|..+|....+ +.|. ...++.|...+-+.|++++|...++..+ .|.|+. .
T Consensus 349 l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAd 423 (966)
T KOG4626|consen 349 LCPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFAD 423 (966)
T ss_pred hCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHH
Confidence 33456788888999999999999999998888 7887 4678888888999999999999998876 578875 5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhh
Q 046257 619 HYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMND 697 (838)
Q Consensus 619 ~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~ 697 (838)
.|+.|...|-..|+.++|.+.+.+. +.++|.-..++..|+.+|..+|+..+|..-++...+
T Consensus 424 a~~NmGnt~ke~g~v~~A~q~y~rA------------------I~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk 484 (966)
T KOG4626|consen 424 ALSNMGNTYKEMGDVSAAIQCYTRA------------------IQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK 484 (966)
T ss_pred HHHhcchHHHHhhhHHHHHHHHHHH------------------HhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc
Confidence 7888888898899999999888877 788998999999999999999999999999888754
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.8e-14 Score=165.81 Aligned_cols=406 Identities=10% Similarity=0.004 Sum_probs=234.2
Q ss_pred chhHHHHHHHHhHcCCChhHHHHHHhcCCC---CCcchHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCC-hhhHHHHHH
Q 046257 213 VTSVCNALISMYLKSKMVRDARAVFDGMED---RDSITWNSMVAGYVTNELHMEAFETFNNMGLAGAELT-RSTFVSVIK 288 (838)
Q Consensus 213 ~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~ 288 (838)
+.....-.+......|+.++|++++..... .+...+..+...+...|++++|.++|++..+. .|+ ......+..
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~ 91 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--EPQNDDYQRGLIL 91 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 334444455555566666666666665543 12223566666666666666666666665543 232 233444445
Q ss_pred HHhccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHHhccc--CCCeeehHHHHHHHHHcCChHHH
Q 046257 289 LCATTKELRLARQLHSQVLKNGIDFDHNIRTGLMVAYSKCGKMEDASKIFSMMRE--MKDVVSWTAMISGHLQNGAIDLA 366 (838)
Q Consensus 289 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~~li~~~~~~g~~~~A 366 (838)
.+...|+.++|...++.+++.. +.+.. +..+..++...|+.++|...++++.+ +.+...+..+...+...|..++|
T Consensus 92 ~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~A 169 (765)
T PRK10049 92 TLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPA 169 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHH
Confidence 5555666666666666655552 22333 55555555555555555555555542 12233334444455555555555
Q ss_pred HHHHHHhhhcCCCCCcccHHHHHhhCCCCChhHHHHHHHHhhccCCcchhhHHHHHHHHcCCHHHHHHHHHhcCCCCcch
Q 046257 367 VNFFCQMTREGVRPNGFTYSIILTAQPAVSPFQVHAHIIKTNYEKSFSVGTALLNAYVKKGILDEAAKVFELIDEKDIVA 446 (838)
Q Consensus 367 ~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~ 446 (838)
++.++.... .|+..... . ......++..+...
T Consensus 170 l~~l~~~~~---~p~~~~~l-----------------------~--~~~~~~~~r~~~~~-------------------- 201 (765)
T PRK10049 170 LGAIDDANL---TPAEKRDL-----------------------E--ADAAAELVRLSFMP-------------------- 201 (765)
T ss_pred HHHHHhCCC---CHHHHHHH-----------------------H--HHHHHHHHHhhccc--------------------
Confidence 555544332 22200000 0 00000111111100
Q ss_pred HHHHHHHHHhcCCc---hHHHHHHHHhhcC-CCCCCHh-hHHH----HHHHhcCChhhHHHHHHHHHHHHHhcCC-Cchh
Q 046257 447 WSAMLAGYAQIGDT---EGAVKIYRQLTSE-GVKPNEF-TFSS----VINACTAPSAAVEQGKQFHACSIKAKLN-NALC 516 (838)
Q Consensus 447 ~~~li~~~~~~g~~---~~A~~l~~~m~~~-g~~p~~~-t~~~----ll~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 516 (838)
.....+++ ++|++.++.+.+. ...|+.. .+.. .+.++... +..+.+...+..+.+.+.+ |+ .
T Consensus 202 ------~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~-g~~~eA~~~~~~ll~~~~~~P~-~ 273 (765)
T PRK10049 202 ------TRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLAR-DRYKDVISEYQRLKAEGQIIPP-W 273 (765)
T ss_pred ------ccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHh-hhHHHHHHHHHHhhccCCCCCH-H
Confidence 00111122 4555555555532 1122211 1100 01222233 5556666666665554421 11 1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC--CC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-----------CC
Q 046257 517 VSSALVTMYSKKGNIESASEVFKRQRK--RD-----LVSWNSMICGYAQHGHTKKALEVFKEMRRQD-----------LE 578 (838)
Q Consensus 517 ~~~~li~~y~k~g~~~~A~~~f~~~~~--~~-----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-----------~~ 578 (838)
....+.+.|...|++++|+..|+++.. |. ...+..+..++...|++++|+++++++.+.. -.
T Consensus 274 a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~ 353 (765)
T PRK10049 274 AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSI 353 (765)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCC
Confidence 112245678889999999999988752 21 2345667778889999999999999998742 11
Q ss_pred CCh---hHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHH
Q 046257 579 FDG---ITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTV 655 (838)
Q Consensus 579 pd~---~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~l 655 (838)
|+. ..+..+...+...|+.++|.++++.+.... +.+...+..+..++.+.|+.++|++.+++.
T Consensus 354 p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~--P~n~~l~~~lA~l~~~~g~~~~A~~~l~~a------------ 419 (765)
T PRK10049 354 PNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA--PGNQGLRIDYASVLQARGWPRAAENELKKA------------ 419 (765)
T ss_pred CCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH------------
Confidence 232 234556677888999999999999987442 234567888889999999999999999987
Q ss_pred HHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 046257 656 LAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMNDR 698 (838)
Q Consensus 656 l~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~~ 698 (838)
++++|+++..++.++..+...|+|++|..+++.+.+.
T Consensus 420 ------l~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 420 ------EVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred ------HhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 7889999999999999999999999999999998764
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=9.3e-14 Score=164.08 Aligned_cols=397 Identities=10% Similarity=0.000 Sum_probs=225.1
Q ss_pred HhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHcCCChhHHHHHHhcCCC---CCcchHHHHHHHHHhCCChHHHH
Q 046257 189 LADEGIVATAVQVHTMVIKNGGEVVTSVCNALISMYLKSKMVRDARAVFDGMED---RDSITWNSMVAGYVTNELHMEAF 265 (838)
Q Consensus 189 ~~~~g~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~n~li~~~~~~g~~~~A~ 265 (838)
....|+.++|.+++....... +.+...+..+...+.+.|++++|..+|++..+ .+...+..+...+...|++++|+
T Consensus 25 a~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~ 103 (765)
T PRK10049 25 ALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEAL 103 (765)
T ss_pred HHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 334444444444444444321 22333344444555555555555555554221 23334445555555566666666
Q ss_pred HHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHHhcccCC
Q 046257 266 ETFNNMGLAGAELTRSTFVSVIKLCATTKELRLARQLHSQVLKNGIDFDHNIRTGLMVAYSKCGKMEDASKIFSMMREMK 345 (838)
Q Consensus 266 ~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~ 345 (838)
..+++..+. .|+...+..+..++...|+.+.|...++.+++.. +.+..++..+...+.+.|..+.|.+.++.....|
T Consensus 104 ~~l~~~l~~--~P~~~~~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p 180 (765)
T PRK10049 104 VKAKQLVSG--APDKANLLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANLTP 180 (765)
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCH
Confidence 666655543 2222114445555555666666666666666554 2244445556666667777777777777665322
Q ss_pred Ce------eehHHHHHHH-----HHcCCh---HHHHHHHHHhhhc-CCCCCccc-HHHHHhhCCCCChhHHHHHHHHhhc
Q 046257 346 DV------VSWTAMISGH-----LQNGAI---DLAVNFFCQMTRE-GVRPNGFT-YSIILTAQPAVSPFQVHAHIIKTNY 409 (838)
Q Consensus 346 ~~------~~~~~li~~~-----~~~g~~---~~A~~l~~~m~~~-g~~pd~~t-~~~ll~a~~~~~~~~~~~~~~~~~~ 409 (838)
+. .....++... ...+++ ++|++.++.+.+. ...|+... +.. +
T Consensus 181 ~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~---a------------------ 239 (765)
T PRK10049 181 AEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQR---A------------------ 239 (765)
T ss_pred HHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHH---H------------------
Confidence 20 0011111111 112223 6777788877754 22333211 110 0
Q ss_pred cCCcchhhHHHHHHHHcCCHHHHHHHHHhcCCCC--cch--HHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHH
Q 046257 410 EKSFSVGTALLNAYVKKGILDEAAKVFELIDEKD--IVA--WSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSV 485 (838)
Q Consensus 410 ~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~--~~~--~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 485 (838)
....+..+...|++++|...|+.+.+.+ ... --.+...|...|++++|+..|+++... .|....
T Consensus 240 ------~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~--~p~~~~---- 307 (765)
T PRK10049 240 ------RIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYH--PETIAD---- 307 (765)
T ss_pred ------HHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhc--CCCCCC----
Confidence 0011223346688888888888877542 111 122466788888888888888887653 222100
Q ss_pred HHHhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-------------C---HH
Q 046257 486 INACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQRK--R-------------D---LV 547 (838)
Q Consensus 486 l~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~--~-------------~---~~ 547 (838)
........|..++.+.|++++|.++++.+.. | + ..
T Consensus 308 ---------------------------~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~ 360 (765)
T PRK10049 308 ---------------------------LSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQ 360 (765)
T ss_pred ---------------------------CChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHH
Confidence 0011122233446677788888777776652 1 1 12
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh-hHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCC-CchHHHHHH
Q 046257 548 SWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDG-ITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPT-MEHYSCMVD 625 (838)
Q Consensus 548 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~ 625 (838)
.+..+...+...|+.++|+++++++.. ..|+. ..+..+...+...|+.++|.+.++.... +.|+ ...+..++.
T Consensus 361 a~~~~a~~l~~~g~~~eA~~~l~~al~--~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~---l~Pd~~~l~~~~a~ 435 (765)
T PRK10049 361 GQSLLSQVAKYSNDLPQAEMRARELAY--NAPGNQGLRIDYASVLQARGWPRAAENELKKAEV---LEPRNINLEVEQAW 435 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---hCCCChHHHHHHHH
Confidence 345667778888999999999999887 45654 5567777788888999999999988873 3465 455666677
Q ss_pred HHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhH
Q 046257 626 LYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIY 672 (838)
Q Consensus 626 ~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y 672 (838)
.+.+.|++++|+.+++++ ++.+|+++.+.
T Consensus 436 ~al~~~~~~~A~~~~~~l------------------l~~~Pd~~~~~ 464 (765)
T PRK10049 436 TALDLQEWRQMDVLTDDV------------------VAREPQDPGVQ 464 (765)
T ss_pred HHHHhCCHHHHHHHHHHH------------------HHhCCCCHHHH
Confidence 888889999999999887 66777776543
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=8e-14 Score=161.06 Aligned_cols=341 Identities=9% Similarity=0.021 Sum_probs=233.4
Q ss_pred cCCChhHHHHHHhcCCCC------CcchHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHH
Q 046257 226 KSKMVRDARAVFDGMEDR------DSITWNSMVAGYVTNELHMEAFETFNNMGLAGAELTRSTFVSVIKLCATTKELRLA 299 (838)
Q Consensus 226 ~~g~~~~A~~~f~~m~~~------~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 299 (838)
+..+++.-.-.|..-++. +..-.-.++..+.+.|++++|+.+++........+.. .+..+..+....|+++.|
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~-~l~~l~~~~l~~g~~~~A 95 (656)
T PRK15174 17 KQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRD-LLRRWVISPLASSQPDAV 95 (656)
T ss_pred hhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchh-HHHHHhhhHhhcCCHHHH
Confidence 455666655566555541 2233445677788889999999999888776433333 344444556678999999
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHHhccc--CCCeeehHHHHHHHHHcCChHHHHHHHHHhhhcC
Q 046257 300 RQLHSQVLKNGIDFDHNIRTGLMVAYSKCGKMEDASKIFSMMRE--MKDVVSWTAMISGHLQNGAIDLAVNFFCQMTREG 377 (838)
Q Consensus 300 ~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 377 (838)
.+.++.+++.. +.+...+..+...+...|+.++|...|++... +.+...|..+...+...|++++|...++++....
T Consensus 96 ~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~ 174 (656)
T PRK15174 96 LQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV 174 (656)
T ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC
Confidence 99999888775 34566777788888888999999888888764 3455677788888888888888888888776542
Q ss_pred CCCCcccHHHHHhhCCCCChhHHHHHHHHhhccCCcchhhHHHHHHHHcCCHHHHHHHHHhcCCC----CcchHHHHHHH
Q 046257 378 VRPNGFTYSIILTAQPAVSPFQVHAHIIKTNYEKSFSVGTALLNAYVKKGILDEAAKVFELIDEK----DIVAWSAMLAG 453 (838)
Q Consensus 378 ~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~----~~~~~~~li~~ 453 (838)
|+..... ..+ ..+...|++++|...++.+.+. +...+..+...
T Consensus 175 --P~~~~a~------------------------------~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~ 221 (656)
T PRK15174 175 --PPRGDMI------------------------------ATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDT 221 (656)
T ss_pred --CCCHHHH------------------------------HHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHH
Confidence 3222211 011 2255677777777777765442 22233444566
Q ss_pred HHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHH
Q 046257 454 YAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIES 533 (838)
Q Consensus 454 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~ 533 (838)
+.+.|++++|+..|+++... .|+ +...+..+...|.+.|++++
T Consensus 222 l~~~g~~~eA~~~~~~al~~--~p~-----------------------------------~~~~~~~Lg~~l~~~G~~~e 264 (656)
T PRK15174 222 LCAVGKYQEAIQTGESALAR--GLD-----------------------------------GAALRRSLGLAYYQSGRSRE 264 (656)
T ss_pred HHHCCCHHHHHHHHHHHHhc--CCC-----------------------------------CHHHHHHHHHHHHHcCCchh
Confidence 67777777777777776653 233 23344456667778888875
Q ss_pred ----HHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh-hHHHHHHHHHhccCCHHHHHHHHH
Q 046257 534 ----ASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDG-ITFIGVITACTHAGLVDEGQQYFD 605 (838)
Q Consensus 534 ----A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~ 605 (838)
|...|++.. +.+...|..+...+...|++++|+..+++..+ ..|+. ..+..+..++...|++++|...|+
T Consensus 265 A~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~--l~P~~~~a~~~La~~l~~~G~~~eA~~~l~ 342 (656)
T PRK15174 265 AKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLA--THPDLPYVRAMYARALRQVGQYTAASDEFV 342 (656)
T ss_pred hHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 677787665 34567888888888888888888888888887 56664 456667778888888888888888
Q ss_pred HHHhcCCccCCCch-HHHHHHHHHhcCCHHHHHHHHhhC
Q 046257 606 IMVNEHHIYPTMEH-YSCMVDLYSRAGMLEKAMDIINRM 643 (838)
Q Consensus 606 ~m~~~~~~~p~~~~-y~~lv~~l~r~G~~~~A~~~~~~m 643 (838)
.+... .|+... +..+..+|...|+.++|.+.+++.
T Consensus 343 ~al~~---~P~~~~~~~~~a~al~~~G~~deA~~~l~~a 378 (656)
T PRK15174 343 QLARE---KGVTSKWNRYAAAALLQAGKTSEAESVFEHY 378 (656)
T ss_pred HHHHh---CccchHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 87743 354322 334567788888889888888876
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.8e-14 Score=163.73 Aligned_cols=325 Identities=10% Similarity=-0.000 Sum_probs=233.1
Q ss_pred hHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHHhccc--CCCeeehHHHHHHHHH
Q 046257 282 TFVSVIKLCATTKELRLARQLHSQVLKNGIDFDHNIRTGLMVAYSKCGKMEDASKIFSMMRE--MKDVVSWTAMISGHLQ 359 (838)
Q Consensus 282 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~~li~~~~~ 359 (838)
-...++..+.+.|+++.|..++...+.....+ ......++......|+.++|...|+++.. +.+...|..+...+.+
T Consensus 44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~ 122 (656)
T PRK15174 44 NIILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLK 122 (656)
T ss_pred CHHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 45556677778888888888888887775443 33444444555668888888888887753 3345567777777778
Q ss_pred cCChHHHHHHHHHhhhcCCCCCcccHHHHHhhCCCCChhHHHHHHHHhhccCCcchhhHHHHHHHHcCCHHHHHHHHHhc
Q 046257 360 NGAIDLAVNFFCQMTREGVRPNGFTYSIILTAQPAVSPFQVHAHIIKTNYEKSFSVGTALLNAYVKKGILDEAAKVFELI 439 (838)
Q Consensus 360 ~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~ 439 (838)
.|++++|+..|++.... .|+.... +..+...|...|++++|...++.+
T Consensus 123 ~g~~~~Ai~~l~~Al~l--~P~~~~a------------------------------~~~la~~l~~~g~~~eA~~~~~~~ 170 (656)
T PRK15174 123 SKQYATVADLAEQAWLA--FSGNSQI------------------------------FALHLRTLVLMDKELQAISLARTQ 170 (656)
T ss_pred cCCHHHHHHHHHHHHHh--CCCcHHH------------------------------HHHHHHHHHHCCChHHHHHHHHHH
Confidence 88888888888777653 3443222 234566667777777777776655
Q ss_pred CC--C-CcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCchh
Q 046257 440 DE--K-DIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFHACSIKAKLNNALC 516 (838)
Q Consensus 440 ~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 516 (838)
.. + +...+..+ ..+.+.|++++|+..++++......+ +..
T Consensus 171 ~~~~P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~------------------------------------~~~ 213 (656)
T PRK15174 171 AQEVPPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALE------------------------------------RQE 213 (656)
T ss_pred HHhCCCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCc------------------------------------chh
Confidence 32 2 22223222 23566677777777776665432111 111
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHH----HHHHHHHHHHcCCCCCh-hHHHHHH
Q 046257 517 VSSALVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKK----ALEVFKEMRRQDLEFDG-ITFIGVI 588 (838)
Q Consensus 517 ~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~----A~~l~~~m~~~g~~pd~-~t~~~ll 588 (838)
....+...|.+.|++++|...|++.. +.+...+..+...|...|+.++ |+..|++..+ ..|+. ..+..+.
T Consensus 214 ~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~--l~P~~~~a~~~lg 291 (656)
T PRK15174 214 SAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ--FNSDNVRIVTLYA 291 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh--hCCCCHHHHHHHH
Confidence 22233456778999999999998876 4467889999999999999986 8999999998 67774 5788889
Q ss_pred HHHhccCCHHHHHHHHHHHHhcCCccCC-CchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCC
Q 046257 589 TACTHAGLVDEGQQYFDIMVNEHHIYPT-MEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPH 667 (838)
Q Consensus 589 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~ 667 (838)
..+...|++++|..+++..... .|+ ...+..+..+|.+.|++++|.+.++++ ++.+|+
T Consensus 292 ~~l~~~g~~~eA~~~l~~al~l---~P~~~~a~~~La~~l~~~G~~~eA~~~l~~a------------------l~~~P~ 350 (656)
T PRK15174 292 DALIRTGQNEKAIPLLQQSLAT---HPDLPYVRAMYARALRQVGQYTAASDEFVQL------------------AREKGV 350 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH------------------HHhCcc
Confidence 9999999999999999998843 454 445677889999999999999999987 567887
Q ss_pred CchhHHHHHHHHHhcCCchHHHHHHHHHhhCC
Q 046257 668 DSAIYVLLSNMYAATGHWQERARVRKLMNDRK 699 (838)
Q Consensus 668 ~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~~g 699 (838)
++..+..++.+|...|++++|...++...+..
T Consensus 351 ~~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 351 TSKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 77777778889999999999999998876553
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.1e-13 Score=158.17 Aligned_cols=417 Identities=11% Similarity=0.026 Sum_probs=215.1
Q ss_pred HHHHHHHHhCCChHHHHHHHccCCC--CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCC
Q 046257 117 TSLVDLYMRTNNVEDGRRVFDDMNE--SNVVSWTSLLSGYARNKMNDRVLELFHRMQVEGIKPNSFTFSTVLGVLADEGI 194 (838)
Q Consensus 117 ~~li~~y~~~g~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 194 (838)
..+...|.+.|+++.|...|+.... |+...|..+..+|.+.|++++|++.++...+... .+...+..+..++...|+
T Consensus 131 k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p-~~~~a~~~~a~a~~~lg~ 209 (615)
T TIGR00990 131 KEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDP-DYSKALNRRANAYDGLGK 209 (615)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCC
Confidence 3445667777888888888877543 6666777777777778888888888777766431 234566677777777788
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHhHcCCChhHHHHHHhcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHhhhC
Q 046257 195 VATAVQVHTMVIKNGGEVVTSVCNALISMYLKSKMVRDARAVFDGMEDRDSITWNSMVAGYVTNELHMEAFETFNNMGLA 274 (838)
Q Consensus 195 ~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~ 274 (838)
+++|..-+..+...+-..+.... .++.-+........+...++.-+ .+..+|..+. .|........+..-+.+-.+
T Consensus 210 ~~eA~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~a~~~~~~~l~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~- 285 (615)
T TIGR00990 210 YADALLDLTASCIIDGFRNEQSA-QAVERLLKKFAESKAKEILETKP-ENLPSVTFVG-NYLQSFRPKPRPAGLEDSNE- 285 (615)
T ss_pred HHHHHHHHHHHHHhCCCccHHHH-HHHHHHHHHHHHHHHHHHHhcCC-CCCCCHHHHH-HHHHHccCCcchhhhhcccc-
Confidence 87777766655444311111111 11111111111223333332221 1222332221 12221111111111111000
Q ss_pred CCCCCh-hhHHHHHH---HHhccCcHHHHHHHHHHHHHhC-C-CCChhHHHHHHHHHHcCCChHHHHHHHHhccc-CC-C
Q 046257 275 GAELTR-STFVSVIK---LCATTKELRLARQLHSQVLKNG-I-DFDHNIRTGLMVAYSKCGKMEDASKIFSMMRE-MK-D 346 (838)
Q Consensus 275 g~~p~~-~t~~~ll~---~~~~~~~~~~a~~~~~~~~~~g-~-~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~-~~-~ 346 (838)
..|.. ..+..+.. -....+++++|.+.++..++.+ . +.....++.+...|...|++++|...|++..+ .| +
T Consensus 286 -~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~ 364 (615)
T TIGR00990 286 -LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRV 364 (615)
T ss_pred -cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 01110 00000000 0122355666666666666554 1 22344556666666666777777776666542 22 2
Q ss_pred eeehHHHHHHHHHcCChHHHHHHHHHhhhcCCCCCcccHHHHHhhCCCCChhHHHHHHHHhhccCCcchhhHHHHHHHHc
Q 046257 347 VVSWTAMISGHLQNGAIDLAVNFFCQMTREGVRPNGFTYSIILTAQPAVSPFQVHAHIIKTNYEKSFSVGTALLNAYVKK 426 (838)
Q Consensus 347 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~y~~~ 426 (838)
...|..+...+...|++++|+..|++..+. .|+.. .++..+...|...
T Consensus 365 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~p~~~------------------------------~~~~~lg~~~~~~ 412 (615)
T TIGR00990 365 TQSYIKRASMNLELGDPDKAEEDFDKALKL--NSEDP------------------------------DIYYHRAQLHFIK 412 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCH------------------------------HHHHHHHHHHHHc
Confidence 335566666666677777777777666553 22211 1223455556666
Q ss_pred CCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCC-HhhHHHHHHHhcCChhhHHHHHHH
Q 046257 427 GILDEAAKVFELIDE---KDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPN-EFTFSSVINACTAPSAAVEQGKQF 502 (838)
Q Consensus 427 g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~~~~~~ 502 (838)
|++++|...|+...+ .+...|..+...+.+.|++++|+..|++.... .|+ ...+..+-..+... +.++.+...
T Consensus 413 g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~-g~~~~A~~~ 489 (615)
T TIGR00990 413 GEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQ-NKFDEAIEK 489 (615)
T ss_pred CCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHc-cCHHHHHHH
Confidence 777777776665543 23445556666666677777777777666542 333 34444444455555 666666666
Q ss_pred HHHHHHhcCCCchh------HHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 046257 503 HACSIKAKLNNALC------VSSALVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMR 573 (838)
Q Consensus 503 ~~~~~~~~~~~~~~------~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 573 (838)
+...+......+.. .++.....|...|++++|.+++++.. +.+...|..+...|.+.|++++|++.|++..
T Consensus 490 ~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~ 569 (615)
T TIGR00990 490 FDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAA 569 (615)
T ss_pred HHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 66665543221111 11111222334466666666666543 2334456666666666777777777666665
Q ss_pred H
Q 046257 574 R 574 (838)
Q Consensus 574 ~ 574 (838)
+
T Consensus 570 ~ 570 (615)
T TIGR00990 570 E 570 (615)
T ss_pred H
Confidence 5
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.7e-12 Score=130.20 Aligned_cols=441 Identities=14% Similarity=0.137 Sum_probs=259.1
Q ss_pred ccHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcccHHHHHHHhc--cCCChhh-HHHHHHHHHHhCCCCChhHHHHHH
Q 046257 44 VEYNRLLFEYCRDSLHQEALNLFLGIRRLGLPLFGSTLSSVLKTCG--CLFDHVF-GRQVHCECVKSGFARDVNVSTSLV 120 (838)
Q Consensus 44 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~--~~~~~~~-a~~~~~~~~~~g~~~~~~~~~~li 120 (838)
.+=|.|+.. ...|...++.-+|++|...|++.+...-..+++.-+ ...++.. -.+-|-.|.+.|- .+..+|
T Consensus 117 ~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E-~S~~sW---- 190 (625)
T KOG4422|consen 117 ETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGE-DSTSSW---- 190 (625)
T ss_pred cchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccc-cccccc----
Confidence 355666654 457888899999999999998888776555544322 2222222 1222333333332 222222
Q ss_pred HHHHhCCChHHHHHHHccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHH
Q 046257 121 DLYMRTNNVEDGRRVFDDMNESNVVSWTSLLSGYARNKMNDRVLELFHRMQVEGIKPNSFTFSTVLGVLADEGIVATAVQ 200 (838)
Q Consensus 121 ~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~ 200 (838)
|.|.+.+ -+|+. ..++..+|..||.|+++--..+.|.++|++-.....+.+..+||.+|.+-.- ..+++
T Consensus 191 ----K~G~vAd--L~~E~-~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~ 259 (625)
T KOG4422|consen 191 ----KSGAVAD--LLFET-LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKK 259 (625)
T ss_pred ----ccccHHH--HHHhh-cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHH
Confidence 4465544 44444 4456678999999999999999999999999988889999999999988653 34589
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHhHcCCChhHHHHHHhcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCCh
Q 046257 201 VHTMVIKNGGEVVTSVCNALISMYLKSKMVRDARAVFDGMEDRDSITWNSMVAGYVTNELHMEAFETFNNMGLAGAELTR 280 (838)
Q Consensus 201 l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 280 (838)
+..+|+...+.||.+++|+++...++.|+++.|++.+ ++++.+|++-|+.|..
T Consensus 260 Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aa---------------------------lqil~EmKeiGVePsL 312 (625)
T KOG4422|consen 260 LVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAA---------------------------LQILGEMKEIGVEPSL 312 (625)
T ss_pred HHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHH---------------------------HHHHHHHHHhCCCcch
Confidence 9999999999999999999999999999988876543 3344445555555555
Q ss_pred hhHHHHHHHHhccCcHHH-HHHHHHHHHHh----CCCC----ChhHHHHHHHHHHcCCChHHHHHHHHhccc-------C
Q 046257 281 STFVSVIKLCATTKELRL-ARQLHSQVLKN----GIDF----DHNIRTGLMVAYSKCGKMEDASKIFSMMRE-------M 344 (838)
Q Consensus 281 ~t~~~ll~~~~~~~~~~~-a~~~~~~~~~~----g~~~----~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~-------~ 344 (838)
.+|..+|..+++.++... +..+..++... .+.| |...+..-++.+.+..+.+-|.++-.-+.. .
T Consensus 313 sSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig 392 (625)
T KOG4422|consen 313 SSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIG 392 (625)
T ss_pred hhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcC
Confidence 555555554444443322 22222222211 1111 222333334444444444444444333321 1
Q ss_pred CC---eeehHHHHHHHHHcCChHHHHHHHHHhhhcCCCCCcccHHHHHhhCCCCChhHHHHHHHHhhccCCcchhhHHHH
Q 046257 345 KD---VVSWTAMISGHLQNGAIDLAVNFFCQMTREGVRPNGFTYSIILTAQPAVSPFQVHAHIIKTNYEKSFSVGTALLN 421 (838)
Q Consensus 345 ~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~ 421 (838)
++ .+-|..+....++....+.-+..|+.|.-.-.-|+..+..-+++|....+
T Consensus 393 ~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~------------------------- 447 (625)
T KOG4422|consen 393 PDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVAN------------------------- 447 (625)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcC-------------------------
Confidence 11 12255666777888888888889998888777788888776666544333
Q ss_pred HHHHcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHh---hHHHHHHHhcCChhhHHH
Q 046257 422 AYVKKGILDEAAKVFELIDEKDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEF---TFSSVINACTAPSAAVEQ 498 (838)
Q Consensus 422 ~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~---t~~~ll~a~~~~~~~~~~ 498 (838)
.++-..+++..+.. |...-+.+--++++..|......|+.. -+.....-|+ .+..+
T Consensus 448 ------~~e~ipRiw~D~~~------------~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~a---ad~~e 506 (625)
T KOG4422|consen 448 ------RLEVIPRIWKDSKE------------YGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCA---ADIKE 506 (625)
T ss_pred ------cchhHHHHHHHHHH------------hhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHH---HHHHH
Confidence 33333333322211 110111112233444444443444332 3444333332 22222
Q ss_pred HHHH-HHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC-C----CCHHHHHHHH---HHHHHcCChHHHHHHH
Q 046257 499 GKQF-HACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQR-K----RDLVSWNSMI---CGYAQHGHTKKALEVF 569 (838)
Q Consensus 499 ~~~~-~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~-~----~~~~~~~~li---~~~~~~g~~~~A~~l~ 569 (838)
+-+. -..+.+ ........+...-.+.+.|+.++|.++|..+. + |.....|+|+ ..-.+..++..|+..+
T Consensus 507 ~~e~~~~R~r~--~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~l 584 (625)
T KOG4422|consen 507 AYESQPIRQRA--QDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVL 584 (625)
T ss_pred HHHhhHHHHHh--ccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHH
Confidence 2221 222222 33445556666777889999999999998773 2 2233455444 4555667788888888
Q ss_pred HHHHHcC
Q 046257 570 KEMRRQD 576 (838)
Q Consensus 570 ~~m~~~g 576 (838)
+-|...+
T Consensus 585 Q~a~~~n 591 (625)
T KOG4422|consen 585 QLASAFN 591 (625)
T ss_pred HHHHHcC
Confidence 8886644
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.4e-13 Score=146.59 Aligned_cols=257 Identities=12% Similarity=0.052 Sum_probs=167.8
Q ss_pred HHHHHHHHcCCCCCcccHHHHHHHhccCCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHccCCCCC
Q 046257 64 NLFLGIRRLGLPLFGSTLSSVLKTCGCLFDHVFGRQVHCECVKSGFARDVNVSTSLVDLYMRTNNVEDGRRVFDDMNESN 143 (838)
Q Consensus 64 ~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~ 143 (838)
.++..|...|+.|+.+||.+++..|+..|+.+.|- ++..|.-...+.+..+++.++......++.+.+. +|-
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 45666777888888888888888888888888888 8888877777777788888888888888877665 677
Q ss_pred cchHHHHHHHHHhCCCchHHHHHHHH-HH-------HCCCCCChhhHHHHHHHHhcCC-Ch------HHHHHHHHHHHHh
Q 046257 144 VVSWTSLLSGYARNKMNDRVLELFHR-MQ-------VEGIKPNSFTFSTVLGVLADEG-IV------ATAVQVHTMVIKN 208 (838)
Q Consensus 144 ~~~~~~li~~~~~~g~~~~A~~l~~~-m~-------~~g~~p~~~t~~~ll~~~~~~g-~~------~~a~~l~~~~~~~ 208 (838)
..+|+.|..+|.+.|+... ++..++ |. ..|+.--..-|-..+++|-..- +. .--+.+++..++.
T Consensus 83 aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkl 161 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKL 161 (1088)
T ss_pred hhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHH
Confidence 7788888888888888654 222222 21 1222212222222222221110 00 0011222333333
Q ss_pred CCCCchhHHH--H--HHHHhHc-CCChhHHHHHHhcCC-CCCcchHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCChhh
Q 046257 209 GGEVVTSVCN--A--LISMYLK-SKMVRDARAVFDGME-DRDSITWNSMVAGYVTNELHMEAFETFNNMGLAGAELTRST 282 (838)
Q Consensus 209 g~~~~~~~~~--~--li~~y~~-~g~~~~A~~~f~~m~-~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 282 (838)
+...-+..++ . .++-... ...+++-........ .++..++.+.+..-..+|+.+.|..++.+|.+.|+..+.+-
T Consensus 162 l~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~Hy 241 (1088)
T KOG4318|consen 162 LAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHY 241 (1088)
T ss_pred HhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCccccc
Confidence 2100000000 0 1111111 122333333333333 37889999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChH
Q 046257 283 FVSVIKLCATTKELRLARQLHSQVLKNGIDFDHNIRTGLMVAYSKCGKME 332 (838)
Q Consensus 283 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~ 332 (838)
|..++-+ .++...+..+..-|...|+.|+..|+...+-...+.|...
T Consensus 242 FwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~ 288 (1088)
T KOG4318|consen 242 FWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTK 288 (1088)
T ss_pred chhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhh
Confidence 9988866 7888889999999999999999999988887777765533
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.1e-12 Score=151.95 Aligned_cols=190 Identities=11% Similarity=0.045 Sum_probs=147.3
Q ss_pred HhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---------CHHHHHHHHHHHHH
Q 046257 488 ACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQRKR---------DLVSWNSMICGYAQ 558 (838)
Q Consensus 488 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~---------~~~~~~~li~~~~~ 558 (838)
+.... +....+...+..+...+.+....+--++.++|...++.++|+.++.++... +......|.-+|..
T Consensus 301 aL~~r-~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld 379 (822)
T PRK14574 301 ALLVR-HQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNE 379 (822)
T ss_pred HHHHh-hhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHh
Confidence 33344 667777777777777776656667778888999999999999999876421 23335678888999
Q ss_pred cCChHHHHHHHHHHHHcCC-----------CCCh---hHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCCchHHHHH
Q 046257 559 HGHTKKALEVFKEMRRQDL-----------EFDG---ITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMV 624 (838)
Q Consensus 559 ~g~~~~A~~l~~~m~~~g~-----------~pd~---~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv 624 (838)
.+++++|..+++++.+.-. .||. ..+..++..+...|++.+|++.++.+.... +-|......+.
T Consensus 380 ~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a--P~n~~l~~~~A 457 (822)
T PRK14574 380 SEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA--PANQNLRIALA 457 (822)
T ss_pred cccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHH
Confidence 9999999999999987311 1222 234455667788999999999999997432 33677888899
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 046257 625 DLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMNDR 698 (838)
Q Consensus 625 ~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~~ 698 (838)
+++...|+..+|++.++.. ..++|++....+.++..+...|+|++|.++.+...+.
T Consensus 458 ~v~~~Rg~p~~A~~~~k~a------------------~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~ 513 (822)
T PRK14574 458 SIYLARDLPRKAEQELKAV------------------ESLAPRSLILERAQAETAMALQEWHQMELLTDDVISR 513 (822)
T ss_pred HHHHhcCCHHHHHHHHHHH------------------hhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 9999999999999999766 5679999999999999999999999999988877664
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.3e-11 Score=143.08 Aligned_cols=430 Identities=10% Similarity=0.093 Sum_probs=256.3
Q ss_pred HHHhCCChHHHHHHHccCCCCCcc---hHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhh---HHHHHHHHhcCCCh
Q 046257 122 LYMRTNNVEDGRRVFDDMNESNVV---SWTSLLSGYARNKMNDRVLELFHRMQVEGIKPNSFT---FSTVLGVLADEGIV 195 (838)
Q Consensus 122 ~y~~~g~~~~A~~~f~~m~~~~~~---~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t---~~~ll~~~~~~g~~ 195 (838)
...+.|+++.|+..|++..+.++. ....++..+...|+.++|+..+++.. .|+... ...+...+...|++
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~~gdy 118 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRNEKRW 118 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCCH
Confidence 457789999999999888753332 23378888888899999998888876 333222 22234566777888
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHhHcCCChhHHHHHHhcCCCCCcchHHHHHHHHHh--CCChHHHHHHHHHhhh
Q 046257 196 ATAVQVHTMVIKNGGEVVTSVCNALISMYLKSKMVRDARAVFDGMEDRDSITWNSMVAGYVT--NELHMEAFETFNNMGL 273 (838)
Q Consensus 196 ~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~--~g~~~~A~~l~~~m~~ 273 (838)
++|.++++.+++.. +.+..++..++..|...++.++|++.++++...+......+..+|.. .++..+|++.++++.+
T Consensus 119 d~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~ 197 (822)
T PRK14574 119 DQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVR 197 (822)
T ss_pred HHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 88888888888876 44466667777888888888888888887776444332223334443 4445457777777766
Q ss_pred CCCCCC-hhhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHHhcccCCCeeehHH
Q 046257 274 AGAELT-RSTFVSVIKLCATTKELRLARQLHSQVLKNGIDFDHNIRTGLMVAYSKCGKMEDASKIFSMMREMKDVVSWTA 352 (838)
Q Consensus 274 ~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~ 352 (838)
. .|+ ...+.....+..+.|-...|.++... .|+.++-...... ..+.|.+..+... .++.
T Consensus 198 ~--~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~------~p~~f~~~~~~~l-----~~~~~a~~vr~a~-~~~~----- 258 (822)
T PRK14574 198 L--APTSEEVLKNHLEILQRNRIVEPALRLAKE------NPNLVSAEHYRQL-----ERDAAAEQVRMAV-LPTR----- 258 (822)
T ss_pred h--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHh------CccccCHHHHHHH-----HHHHHHHHHhhcc-cccc-----
Confidence 5 343 33445555555555555555544433 1221111111100 0111111111110 0000
Q ss_pred HHHHHHHcCC---hHHHHHHHHHhhhc-CCCCCc-ccHHHHHhhCCCCChhHHHHHHHHhhccCCcchhhHHHHHHHHcC
Q 046257 353 MISGHLQNGA---IDLAVNFFCQMTRE-GVRPNG-FTYSIILTAQPAVSPFQVHAHIIKTNYEKSFSVGTALLNAYVKKG 427 (838)
Q Consensus 353 li~~~~~~g~---~~~A~~l~~~m~~~-g~~pd~-~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~y~~~g 427 (838)
....+ .+.|+.-++.+... +-.|.. .-|.. ..--.+-++.+.|
T Consensus 259 -----~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~---------------------------~~~Drl~aL~~r~ 306 (822)
T PRK14574 259 -----SETERFDIADKALADYQNLLTRWGKDPEAQADYQR---------------------------ARIDRLGALLVRH 306 (822)
T ss_pred -----cchhhHHHHHHHHHHHHHHHhhccCCCccchHHHH---------------------------HHHHHHHHHHHhh
Confidence 00111 24455555554431 222221 11110 0012344566778
Q ss_pred CHHHHHHHHHhcCCCC--cc--hHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCChhhHHHHHHHH
Q 046257 428 ILDEAAKVFELIDEKD--IV--AWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFH 503 (838)
Q Consensus 428 ~~~~A~~~f~~~~~~~--~~--~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~ 503 (838)
++.++.+.|+.+.... +. .--++.++|...+++++|+.+|++.....-.+.
T Consensus 307 r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~------------------------- 361 (822)
T PRK14574 307 QTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTF------------------------- 361 (822)
T ss_pred hHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcccccc-------------------------
Confidence 8888888888887432 23 345677888888888888888888755321000
Q ss_pred HHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----------------CCHH-HHHHHHHHHHHcCChHHH
Q 046257 504 ACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQRK-----------------RDLV-SWNSMICGYAQHGHTKKA 565 (838)
Q Consensus 504 ~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~-----------------~~~~-~~~~li~~~~~~g~~~~A 565 (838)
..+++......|.-+|...+++++|..+++++.+ ||-. ....++..+...|+..+|
T Consensus 362 ------~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~A 435 (822)
T PRK14574 362 ------RNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTA 435 (822)
T ss_pred ------CCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHH
Confidence 0011222233455556666777777776666542 1212 233456678888999999
Q ss_pred HHHHHHHHHcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCC-CchHHHHHHHHHhcCCHHHHHHHHhhC
Q 046257 566 LEVFKEMRRQDLEFD-GITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPT-MEHYSCMVDLYSRAGMLEKAMDIINRM 643 (838)
Q Consensus 566 ~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~G~~~~A~~~~~~m 643 (838)
.+.++++.. ..|. ......+...+...|...+|.+.++... .+.|+ .......+..+...|++++|..++++.
T Consensus 436 e~~le~l~~--~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~---~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l 510 (822)
T PRK14574 436 QKKLEDLSS--TAPANQNLRIALASIYLARDLPRKAEQELKAVE---SLAPRSLILERAQAETAMALQEWHQMELLTDDV 510 (822)
T ss_pred HHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh---hhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 999999987 4564 5667778888889999999999997665 34564 345666777788889999999998876
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.3e-12 Score=126.71 Aligned_cols=439 Identities=16% Similarity=0.174 Sum_probs=274.2
Q ss_pred cchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHHh--cCCChHHH-HHHHHHHHHhCCCCchhHHHHH
Q 046257 144 VVSWTSLLSGYARNKMNDRVLELFHRMQVEGIKPNSFTFSTVLGVLA--DEGIVATA-VQVHTMVIKNGGEVVTSVCNAL 220 (838)
Q Consensus 144 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~--~~g~~~~a-~~l~~~~~~~g~~~~~~~~~~l 220 (838)
+++=|.|+.. ..+|...++.-+|+.|++.|+......-..|++..+ ...++-.+ .+.|-.|.+.| +.+..+|
T Consensus 116 V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW--- 190 (625)
T KOG4422|consen 116 VETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW--- 190 (625)
T ss_pred hcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc---
Confidence 3455666554 457889999999999999998777666555555433 22233222 22333344444 2222333
Q ss_pred HHHhHcCCChhHHHHHHhcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHH
Q 046257 221 ISMYLKSKMVRDARAVFDGMEDRDSITWNSMVAGYVTNELHMEAFETFNNMGLAGAELTRSTFVSVIKLCATTKELRLAR 300 (838)
Q Consensus 221 i~~y~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 300 (838)
+.|++.+ -+|+..+ +...++..||.|+++--..+.|.++|++-.....+.+..+|+.+|.+.+- ..++
T Consensus 191 -----K~G~vAd--L~~E~~P-KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K 258 (625)
T KOG4422|consen 191 -----KSGAVAD--LLFETLP-KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGK 258 (625)
T ss_pred -----ccccHHH--HHHhhcC-CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccH
Confidence 3344433 4454444 46678999999999999999999999999998899999999999987653 3448
Q ss_pred HHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHHhcccCCCeeehHHHHHHHHHcCChHHHHHHHHHhhhcCCCC
Q 046257 301 QLHSQVLKNGIDFDHNIRTGLMVAYSKCGKMEDASKIFSMMREMKDVVSWTAMISGHLQNGAIDLAVNFFCQMTREGVRP 380 (838)
Q Consensus 301 ~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 380 (838)
.+..+|....+.||..++|+++....+.|+++.|++.+ ++++.+|++-|+.|
T Consensus 259 ~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aa----------------------------lqil~EmKeiGVeP 310 (625)
T KOG4422|consen 259 KLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAA----------------------------LQILGEMKEIGVEP 310 (625)
T ss_pred HHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHH----------------------------HHHHHHHHHhCCCc
Confidence 88999999999999999999999999999888776543 33344555555555
Q ss_pred CcccHHHHHhhCCCCChh---------HHHHHHHHhhccC----CcchhhHHHHHHHHcCCHHHHHHHHHhcCCC-----
Q 046257 381 NGFTYSIILTAQPAVSPF---------QVHAHIIKTNYEK----SFSVGTALLNAYVKKGILDEAAKVFELIDEK----- 442 (838)
Q Consensus 381 d~~t~~~ll~a~~~~~~~---------~~~~~~~~~~~~~----~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~----- 442 (838)
...+|..++..+.+.++. .|...+....+.| |...+.+-++.+.+..+.+-|.++-.-....
T Consensus 311 sLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ 390 (625)
T KOG4422|consen 311 SLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKF 390 (625)
T ss_pred chhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhh
Confidence 555555555544444433 1111111122222 2233445566666777777777776655432
Q ss_pred ------CcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCchh
Q 046257 443 ------DIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFHACSIKAKLNNALC 516 (838)
Q Consensus 443 ------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 516 (838)
...-|..+....++....+.-+.+|+.|.-.-+-|+..+...+++|.... +.++....++..++..|......
T Consensus 391 ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~-~~~e~ipRiw~D~~~~ght~r~~ 469 (625)
T KOG4422|consen 391 IGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVA-NRLEVIPRIWKDSKEYGHTFRSD 469 (625)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhc-CcchhHHHHHHHHHHhhhhhhHH
Confidence 22346677888889999999999999999888899999999999988777 88888888888887766443322
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcC-CCCHHHHHHHHHHHHHc-CChHHH-HHHHHHHHHcCCCCChhHHHHHHHHHhc
Q 046257 517 VSSALVTMYSKKGNIESASEVFKRQR-KRDLVSWNSMICGYAQH-GHTKKA-LEVFKEMRRQDLEFDGITFIGVITACTH 593 (838)
Q Consensus 517 ~~~~li~~y~k~g~~~~A~~~f~~~~-~~~~~~~~~li~~~~~~-g~~~~A-~~l~~~m~~~g~~pd~~t~~~ll~a~~~ 593 (838)
+..-+ +.++-.-+ .|+...-..+-.+.++. -++.++ ...-.+|.+..+.| ...+.++..+.+
T Consensus 470 l~eei-------------l~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~--t~l~~ia~Ll~R 534 (625)
T KOG4422|consen 470 LREEI-------------LMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWPA--TSLNCIAILLLR 534 (625)
T ss_pred HHHHH-------------HHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCCh--hHHHHHHHHHHH
Confidence 22222 22222222 22222111111111111 012222 22233455544443 345555556678
Q ss_pred cCCHHHHHHHHHHHHhcCCccCCCchHHHHH---HHHHhcCCHHHHHHHHhhC
Q 046257 594 AGLVDEGQQYFDIMVNEHHIYPTMEHYSCMV---DLYSRAGMLEKAMDIINRM 643 (838)
Q Consensus 594 ~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv---~~l~r~G~~~~A~~~~~~m 643 (838)
.|..++|+++|....+.+.-.|.....++|+ |.-.+....-.|...++-|
T Consensus 535 ~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a 587 (625)
T KOG4422|consen 535 AGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLA 587 (625)
T ss_pred cchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 8899999998888865555455555555443 4444555566666666544
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.60 E-value=6.6e-10 Score=117.59 Aligned_cols=595 Identities=12% Similarity=0.105 Sum_probs=334.1
Q ss_pred ChHHHHHHHHHHHHcCCCCCcccHHHHHHHhccCCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHc
Q 046257 58 LHQEALNLFLGIRRLGLPLFGSTLSSVLKTCGCLFDHVFGRQVHCECVKSGFARDVNVSTSLVDLYMRTNNVEDGRRVFD 137 (838)
Q Consensus 58 ~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~ 137 (838)
+...|..++...++.+ |.++..|.+-.+.=-..|.+..|+.+ +..|.+-.+..-..-+. -++....+.|..+..
T Consensus 266 DikKaR~llKSvretn-P~hp~gWIAsArLEEvagKl~~Ar~~----I~~GCe~cprSeDvWLe-aiRLhp~d~aK~vvA 339 (913)
T KOG0495|consen 266 DIKKARLLLKSVRETN-PKHPPGWIASARLEEVAGKLSVARNL----IMKGCEECPRSEDVWLE-AIRLHPPDVAKTVVA 339 (913)
T ss_pred HHHHHHHHHHHHHhcC-CCCCchHHHHHHHHHHhhHHHHHHHH----HHHHHhhCCchHHHHHH-HHhcCChHHHHHHHH
Confidence 4566777777777665 34444554444433344455555544 33343322221111111 123344455555554
Q ss_pred cCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHH
Q 046257 138 DMNESNVVSWTSLLSGYARNKMNDRVLELFHRMQVEGIKPNSFTFSTVLGVLADEGIVATAVQVHTMVIKNGGEVVTSVC 217 (838)
Q Consensus 138 ~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~l~~~~~~~g~~~~~~~~ 217 (838)
......+.+-..-+.+---..+...=..+++...+. -|+.+. |=.+.....+.+.|+-++..+++.- +.+..
T Consensus 340 ~Avr~~P~Sv~lW~kA~dLE~~~~~K~RVlRKALe~--iP~sv~---LWKaAVelE~~~darilL~rAvecc-p~s~d-- 411 (913)
T KOG0495|consen 340 NAVRFLPTSVRLWLKAADLESDTKNKKRVLRKALEH--IPRSVR---LWKAAVELEEPEDARILLERAVECC-PQSMD-- 411 (913)
T ss_pred HHHHhCCCChhhhhhHHhhhhHHHHHHHHHHHHHHh--CCchHH---HHHHHHhccChHHHHHHHHHHHHhc-cchHH--
Confidence 443311111111111111111222223344444432 244332 2334445556666777777777653 22233
Q ss_pred HHHHHHhHcCCChhHHHHHHhcCCC---CCcchHHHHHHHHHhCCChHHHHHHHHH----hhhCCCCCChhhHHHHHHHH
Q 046257 218 NALISMYLKSKMVRDARAVFDGMED---RDSITWNSMVAGYVTNELHMEAFETFNN----MGLAGAELTRSTFVSVIKLC 290 (838)
Q Consensus 218 ~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~n~li~~~~~~g~~~~A~~l~~~----m~~~g~~p~~~t~~~ll~~~ 290 (838)
|.-+|++..-++.|.++++...+ .+...|-+-...--++|+.+....+..+ +...|+..+..-|..=..+|
T Consensus 412 --LwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~ 489 (913)
T KOG0495|consen 412 --LWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEAC 489 (913)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHH
Confidence 34455666677778887776554 3666776666656677777777666654 45567888888887777788
Q ss_pred hccCcHHHHHHHHHHHHHhCCCCC--hhHHHHHHHHHHcCCChHHHHHHHHhccc--CCCeeehHHHHHHHHHcCChHHH
Q 046257 291 ATTKELRLARQLHSQVLKNGIDFD--HNIRTGLMVAYSKCGKMEDASKIFSMMRE--MKDVVSWTAMISGHLQNGAIDLA 366 (838)
Q Consensus 291 ~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~Li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~~li~~~~~~g~~~~A 366 (838)
-..|..-.+..+...++..|++.. ..+++.-...+.+.+.++-|+.+|....+ ..+...|...+..=-..|..++.
T Consensus 490 e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl 569 (913)
T KOG0495|consen 490 EDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESL 569 (913)
T ss_pred hhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHH
Confidence 888888888888888887776543 45666777778888888888888776653 34556677777666677888888
Q ss_pred HHHHHHhhhcCCCCCcccHHHHHhhCCCCChhHHHHHHHHhhccCCcchhhHHHHHHHHcCCHHHHHHHHHhcCC---CC
Q 046257 367 VNFFCQMTREGVRPNGFTYSIILTAQPAVSPFQVHAHIIKTNYEKSFSVGTALLNAYVKKGILDEAAKVFELIDE---KD 443 (838)
Q Consensus 367 ~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~ 443 (838)
..+|++....- |....+ |-....-+-..|++..|+.++++.-+ .+
T Consensus 570 ~Allqkav~~~--pkae~l------------------------------wlM~ake~w~agdv~~ar~il~~af~~~pns 617 (913)
T KOG0495|consen 570 EALLQKAVEQC--PKAEIL------------------------------WLMYAKEKWKAGDVPAARVILDQAFEANPNS 617 (913)
T ss_pred HHHHHHHHHhC--CcchhH------------------------------HHHHHHHHHhcCCcHHHHHHHHHHHHhCCCc
Confidence 88887777642 211111 11223334455666666666665543 23
Q ss_pred cchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHH
Q 046257 444 IVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVT 523 (838)
Q Consensus 444 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~ 523 (838)
...|-+-+..-..+..+++|..+|.+... ..|+...|.--..---.+ +..+.++++....++. ++.-...|-.+..
T Consensus 618 eeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~l-d~~eeA~rllEe~lk~-fp~f~Kl~lmlGQ 693 (913)
T KOG0495|consen 618 EEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYL-DNVEEALRLLEEALKS-FPDFHKLWLMLGQ 693 (913)
T ss_pred HHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHh-hhHHHHHHHHHHHHHh-CCchHHHHHHHhH
Confidence 34566666666666666666666666654 334444433222222222 5566666666555543 2223445555666
Q ss_pred HHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHH
Q 046257 524 MYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGITFIGVITACTHAGLVDEG 600 (838)
Q Consensus 524 ~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a 600 (838)
.|-..++++.|.+.|..-. +..+..|-.+...=-+.|+..+|..++++.+-.+ +-|...|...|..-.+.|+.++|
T Consensus 694 i~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a 772 (913)
T KOG0495|consen 694 IEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQA 772 (913)
T ss_pred HHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHH
Confidence 6666666666666665544 2234456555555556666666666666666532 11345566666666666666666
Q ss_pred HHHHHHHHhcCCccCCCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHH---------HH-----HhccCC
Q 046257 601 QQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAA---------CR-----LISLQP 666 (838)
Q Consensus 601 ~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~---------c~-----~~~l~P 666 (838)
..+..+..++. +.+-..|..-|.+..+.++-..+.+.+++-...|.+. -+.-.. || .+..+|
T Consensus 773 ~~lmakALQec--p~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVl--laia~lfw~e~k~~kar~Wf~Ravk~d~ 848 (913)
T KOG0495|consen 773 ELLMAKALQEC--PSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVL--LAIAKLFWSEKKIEKAREWFERAVKKDP 848 (913)
T ss_pred HHHHHHHHHhC--CccchhHHHHHHhccCcccchHHHHHHHhccCCchhH--HHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 66666555432 2223345555555555555555555555543223221 111000 11 478999
Q ss_pred CCchhHHHHHHHHHhcCCchHHHHHHHHHhhCCCccCCceeEEEE
Q 046257 667 HDSAIYVLLSNMYAATGHWQERARVRKLMNDRKVKKEAGYSWIEV 711 (838)
Q Consensus 667 ~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~~~~~s~i~~ 711 (838)
++..++..+-..+..+|.-++-.+++++.... .|.-|-.|+-+
T Consensus 849 d~GD~wa~fykfel~hG~eed~kev~~~c~~~--EP~hG~~W~av 891 (913)
T KOG0495|consen 849 DNGDAWAWFYKFELRHGTEEDQKEVLKKCETA--EPTHGELWQAV 891 (913)
T ss_pred ccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCCCcHHHHH
Confidence 99999999999999999999999999887653 23346666543
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.50 E-value=6.7e-11 Score=129.16 Aligned_cols=123 Identities=14% Similarity=0.115 Sum_probs=91.4
Q ss_pred chhhHHHHHHHHcCCHHHHHHHHHhcCCCCc------chHHHHHHHHHhcCCchHHHHHHHHhhcCCC-CCC-HhhHHHH
Q 046257 414 SVGTALLNAYVKKGILDEAAKVFELIDEKDI------VAWSAMLAGYAQIGDTEGAVKIYRQLTSEGV-KPN-EFTFSSV 485 (838)
Q Consensus 414 ~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~-~~t~~~l 485 (838)
..|..||+.+......+.|..+.+++..++. .-+..+.+...+.+....+..++.+|.+.-. .|+ ..++-.+
T Consensus 492 g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~ 571 (1088)
T KOG4318|consen 492 GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPL 571 (1088)
T ss_pred hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHH
Confidence 5678899999999999999999999987644 4578889999999999999999999987422 222 3444455
Q ss_pred HHHhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 046257 486 INACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQ 541 (838)
Q Consensus 486 l~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~ 541 (838)
++.-+.. +..+.-++.++.+...|+..+ .-|+....+.++...|.++++..
T Consensus 572 lns~a~a-gqqe~Lkkl~d~lvslgl~et----gPl~~vhLrkdd~s~a~ea~e~~ 622 (1088)
T KOG4318|consen 572 LNSGAPA-GQQEKLKKLADILVSLGLSET----GPLWMVHLRKDDQSAAQEAPEPE 622 (1088)
T ss_pred Hhhhhhc-cCHHHHHHHHHHHHHhhhhhc----ccceEEEeeccchhhhhhcchHH
Confidence 6666666 888999999999888887553 22333345667777777776543
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.6e-08 Score=107.34 Aligned_cols=473 Identities=14% Similarity=0.131 Sum_probs=284.9
Q ss_pred cCCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHccCCC---CCcchHHHHHHHHHhCCCchHHHHH
Q 046257 90 CLFDHVFGRQVHCECVKSGFARDVNVSTSLVDLYMRTNNVEDGRRVFDDMNE---SNVVSWTSLLSGYARNKMNDRVLEL 166 (838)
Q Consensus 90 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l 166 (838)
...+.+.|+.++....+.= +.+.. |.-+|++...++.|.++++...+ .+...|.+-...=-.+|+.+...++
T Consensus 388 elE~~~darilL~rAvecc-p~s~d----LwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~ki 462 (913)
T KOG0495|consen 388 ELEEPEDARILLERAVECC-PQSMD----LWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKI 462 (913)
T ss_pred hccChHHHHHHHHHHHHhc-cchHH----HHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHH
Confidence 4445555676666655542 22223 44456677778888888876654 4666777776666777877777776
Q ss_pred HHH----HHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCC--chhHHHHHHHHhHcCCChhHHHHHHhcC
Q 046257 167 FHR----MQVEGIKPNSFTFSTVLGVLADEGIVATAVQVHTMVIKNGGEV--VTSVCNALISMYLKSKMVRDARAVFDGM 240 (838)
Q Consensus 167 ~~~----m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~l~~~~~~~g~~~--~~~~~~~li~~y~~~g~~~~A~~~f~~m 240 (838)
..+ +...|+..|...|..=..+|-..|.+-.+..+....+..|++. -..+|+.-...+.+.+.++-|+.+|...
T Consensus 463 i~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~a 542 (913)
T KOG0495|consen 463 IDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHA 542 (913)
T ss_pred HHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHH
Confidence 654 4567777787777777777777777777777777777766533 2346666666777777777777777654
Q ss_pred CC---CCcchHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCChhH
Q 046257 241 ED---RDSITWNSMVAGYVTNELHMEAFETFNNMGLAGAELTRSTFVSVIKLCATTKELRLARQLHSQVLKNGIDFDHNI 317 (838)
Q Consensus 241 ~~---~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 317 (838)
.+ .+...|...+..--..|..++-..+|++.... .+-....+....+..-..|++..|+.++..+.+... .+..+
T Consensus 543 lqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~p-nseei 620 (913)
T KOG0495|consen 543 LQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANP-NSEEI 620 (913)
T ss_pred HhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCC-CcHHH
Confidence 43 24455665555555556666666666666543 111222233333344445666666666666655542 24555
Q ss_pred HHHHHHHHHcCCChHHHHHHHHhccc-CCCeeehHHHHHHHHHcCChHHHHHHHHHhhhcCCCCCcccHHHHHhhCCCCC
Q 046257 318 RTGLMVAYSKCGKMEDASKIFSMMRE-MKDVVSWTAMISGHLQNGAIDLAVNFFCQMTREGVRPNGFTYSIILTAQPAVS 396 (838)
Q Consensus 318 ~~~Li~~y~~~g~~~~A~~~f~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~ 396 (838)
+-+-+..-.....++.|+.+|.+... .++...|..-+..---.+..++|++++++..+. -|+..
T Consensus 621 wlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~------------- 685 (913)
T KOG0495|consen 621 WLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFH------------- 685 (913)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchH-------------
Confidence 55556666666666666666655542 333444444444444445555555555544432 12211
Q ss_pred hhHHHHHHHHhhccCCcchhhHHHHHHHHcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCC
Q 046257 397 PFQVHAHIIKTNYEKSFSVGTALLNAYVKKGILDEAAKVFELIDEKDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVK 476 (838)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 476 (838)
..|-.+...+-+.++.+.|.+.|..-.+ ..
T Consensus 686 ------------------------------------------------Kl~lmlGQi~e~~~~ie~aR~aY~~G~k--~c 715 (913)
T KOG0495|consen 686 ------------------------------------------------KLWLMLGQIEEQMENIEMAREAYLQGTK--KC 715 (913)
T ss_pred ------------------------------------------------HHHHHHhHHHHHHHHHHHHHHHHHhccc--cC
Confidence 1344444444455555555555543322 23
Q ss_pred CCHhhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHH
Q 046257 477 PNEFTFSSVINACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMI 553 (838)
Q Consensus 477 p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li 553 (838)
|+..-+=.++.-.-...+.+-.|+.++......+ +.+...|-..|.|-.+.|+.+.|..+..+.. +.+-..|..-|
T Consensus 716 P~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI 794 (913)
T KOG0495|consen 716 PNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAI 794 (913)
T ss_pred CCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHH
Confidence 4443333333222222234445555555444433 3456677778888888899998888776654 33556788888
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCC-chHHHHHHHHHhcCC
Q 046257 554 CGYAQHGHTKKALEVFKEMRRQDLEFDGITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTM-EHYSCMVDLYSRAGM 632 (838)
Q Consensus 554 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~y~~lv~~l~r~G~ 632 (838)
....+.++-.++...+++ ..-|+.....+...+-....++.|++.|.+.++ +.|+. .+|.-+...+.+.|.
T Consensus 795 ~le~~~~rkTks~DALkk-----ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk---~d~d~GD~wa~fykfel~hG~ 866 (913)
T KOG0495|consen 795 WLEPRPQRKTKSIDALKK-----CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVK---KDPDNGDAWAWFYKFELRHGT 866 (913)
T ss_pred HhccCcccchHHHHHHHh-----ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHc---cCCccchHHHHHHHHHHHhCC
Confidence 777777776666655544 344777777777888888889999999998873 45654 567777788889998
Q ss_pred HHHHHHHHhhC
Q 046257 633 LEKAMDIINRM 643 (838)
Q Consensus 633 ~~~A~~~~~~m 643 (838)
-++-.+++.+.
T Consensus 867 eed~kev~~~c 877 (913)
T KOG0495|consen 867 EEDQKEVLKKC 877 (913)
T ss_pred HHHHHHHHHHH
Confidence 88878887765
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.5e-11 Score=120.62 Aligned_cols=124 Identities=8% Similarity=0.042 Sum_probs=58.4
Q ss_pred HHHHHhccCCChhhHHHHHHHHHHhCCCCChhHH-HHHHHHHHhCCChHHHHHHHccC----CCCC----cchHHHHHHH
Q 046257 83 SVLKTCGCLFDHVFGRQVHCECVKSGFARDVNVS-TSLVDLYMRTNNVEDGRRVFDDM----NESN----VVSWTSLLSG 153 (838)
Q Consensus 83 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~-~~li~~y~~~g~~~~A~~~f~~m----~~~~----~~~~~~li~~ 153 (838)
.|...|.......+|+..++-+.+...-|+.-.. -.+-+.|.+...+..|.+.+.-. |.-+ .-..|.+--.
T Consensus 206 nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvt 285 (840)
T KOG2003|consen 206 NLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVT 285 (840)
T ss_pred HHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCee
Confidence 3444444444555555555555554443433221 12223455555555555544322 2111 1123333334
Q ss_pred HHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 046257 154 YARNKMNDRVLELFHRMQVEGIKPNSFTFSTVLGVLADEGIVATAVQVHTMVIKN 208 (838)
Q Consensus 154 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~l~~~~~~~ 208 (838)
+.+.|.+++|+.-|+...+. .||..+-..|+-++...|+-++.++.|..++..
T Consensus 286 fiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~i 338 (840)
T KOG2003|consen 286 FIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDI 338 (840)
T ss_pred EEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcC
Confidence 45566666666666555443 355554444444444555666666666655544
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.47 E-value=6.2e-09 Score=114.97 Aligned_cols=603 Identities=10% Similarity=0.030 Sum_probs=368.9
Q ss_pred HHccCChHHHHHHHHHHHHcCCCCCcccHHHHHHHhccCCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHH
Q 046257 53 YCRDSLHQEALNLFLGIRRLGLPLFGSTLSSVLKTCGCLFDHVFGRQVHCECVKSGFARDVNVSTSLVDLYMRTNNVEDG 132 (838)
Q Consensus 53 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A 132 (838)
+...|+.++|.+++.+..+.. +.....|.+|-..|-..|+.+.+...+-.+.... +.|...|-.+-....+.|.++.|
T Consensus 149 lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA 226 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQA 226 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHH
Confidence 334599999999999998765 5667789999999999999998887654433333 45668899999999999999999
Q ss_pred HHHHccCCCCCcchHHH---HHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHH----HHHHHhcCCChHHHHHHHHHH
Q 046257 133 RRVFDDMNESNVVSWTS---LLSGYARNKMNDRVLELFHRMQVEGIKPNSFTFST----VLGVLADEGIVATAVQVHTMV 205 (838)
Q Consensus 133 ~~~f~~m~~~~~~~~~~---li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~----ll~~~~~~g~~~~a~~l~~~~ 205 (838)
+-.|.+..+.++.-|-. -...|-+.|+...|++-|.++.+.....|-.-+.. +++.+...++-+.|.+.+...
T Consensus 227 ~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~ 306 (895)
T KOG2076|consen 227 RYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGA 306 (895)
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 99999887644433433 45678899999999999999987654333333333 344555666668888877777
Q ss_pred HHhC-CCCchhHHHHHHHHhHcCCChhHHHHHHhcCCC----C----------------------CcchHHH----HHHH
Q 046257 206 IKNG-GEVVTSVCNALISMYLKSKMVRDARAVFDGMED----R----------------------DSITWNS----MVAG 254 (838)
Q Consensus 206 ~~~g-~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~----~----------------------~~~~~n~----li~~ 254 (838)
...+ -..+...++.++.+|.+...++.|......+.. + +..+|+. +.-+
T Consensus 307 ~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~ic 386 (895)
T KOG2076|consen 307 LSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMIC 386 (895)
T ss_pred HhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhh
Confidence 6632 244566788888889988888888877655443 1 1122221 2233
Q ss_pred HHhCCChHHHHHHHHHhhhCC--CCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChH
Q 046257 255 YVTNELHMEAFETFNNMGLAG--AELTRSTFVSVIKLCATTKELRLARQLHSQVLKNGIDFDHNIRTGLMVAYSKCGKME 332 (838)
Q Consensus 255 ~~~~g~~~~A~~l~~~m~~~g--~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~ 332 (838)
+++....+....+.....+.. +.-+...|.-+..++...|.+.+|..++..+......-+..+|-.+..+|...|..+
T Consensus 387 L~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e 466 (895)
T KOG2076|consen 387 LVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYE 466 (895)
T ss_pred hhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHH
Confidence 344443344444444444555 333455788899999999999999999999998876667889999999999999999
Q ss_pred HHHHHHHhccc--CCCeeehHHHHHHHHHcCChHHHHHHHHHhhhcCCCCCcccHHHHHhhCCCCChhHHHHHHHHhhcc
Q 046257 333 DASKIFSMMRE--MKDVVSWTAMISGHLQNGAIDLAVNFFCQMTREGVRPNGFTYSIILTAQPAVSPFQVHAHIIKTNYE 410 (838)
Q Consensus 333 ~A~~~f~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~ 410 (838)
+|...|..+.. +.+...--+|-..+.+.|+.++|++.+..|. .||..+- .+| +.+
T Consensus 467 ~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~----~~D~~~~----e~~---------------a~~ 523 (895)
T KOG2076|consen 467 EAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQII----NPDGRNA----EAC---------------AWE 523 (895)
T ss_pred HHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhccc----CCCccch----hhc---------------ccc
Confidence 99999998863 2234445556677889999999999999886 3443321 111 122
Q ss_pred CCcchhhHHHHHHHHcCCHHHHHHHHHhcCCCCcchHHHHH-----------HHHHhcCCchHHHHHHHHhhcCCCCCCH
Q 046257 411 KSFSVGTALLNAYVKKGILDEAAKVFELIDEKDIVAWSAML-----------AGYAQIGDTEGAVKIYRQLTSEGVKPNE 479 (838)
Q Consensus 411 ~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li-----------~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 479 (838)
++..+.--..+.|.+.|+.++-..+-..|..+ .....++ .+-...+...+-......|...+. +.
T Consensus 524 ~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~--~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~--~~ 599 (895)
T KOG2076|consen 524 PERRILAHRCDILFQVGKREEFINTASTLVDD--FLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKAT--DD 599 (895)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccC--ch
Confidence 22223334556666777766633332222110 0000000 000001111111111111211110 00
Q ss_pred hhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCch--hHHHHHHHHHHhcCCHHHHHHHHHhcCCC-----CH----HH
Q 046257 480 FTFSSVINACTAPSAAVEQGKQFHACSIKAKLNNAL--CVSSALVTMYSKKGNIESASEVFKRQRKR-----DL----VS 548 (838)
Q Consensus 480 ~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~li~~y~k~g~~~~A~~~f~~~~~~-----~~----~~ 548 (838)
.+...- ...+ .........++.-+. ..+.-++...+|.|+.++|..+...+..- +. ..
T Consensus 600 ~~~~~~----------l~d~-~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l 668 (895)
T KOG2076|consen 600 NVMEKA----------LSDG-TEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKEL 668 (895)
T ss_pred HHhhhc----------ccch-hhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHH
Confidence 000000 0000 000111111222111 23445777889999999999998876632 21 12
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHc-CC--CCCh-hHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCCchHHHH-
Q 046257 549 WNSMICGYAQHGHTKKALEVFKEMRRQ-DL--EFDG-ITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCM- 623 (838)
Q Consensus 549 ~~~li~~~~~~g~~~~A~~l~~~m~~~-g~--~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~l- 623 (838)
-+.++.+....+++.+|.+.++.|... +. .|.. ..|+...+..+..|+-.-=.+++.... -..|+-.++-++
T Consensus 669 ~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~---~~~~~~~~~l~~i 745 (895)
T KOG2076|consen 669 QFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLL---VKNKDDTPPLALI 745 (895)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccCccCCcceeee
Confidence 345667778899999999999999874 22 2332 345545555555544332223322221 222333233222
Q ss_pred -HHHHHhcCCHHHHHHHHhhC-CCCCCHHHHHHHHHHHH-------------------------HhccCC--CCchhHHH
Q 046257 624 -VDLYSRAGMLEKAMDIINRM-PFAASATVWRTVLAACR-------------------------LISLQP--HDSAIYVL 674 (838)
Q Consensus 624 -v~~l~r~G~~~~A~~~~~~m-~~~~~~~~w~~ll~~c~-------------------------~~~l~P--~~~~~y~~ 674 (838)
...+...|.+.-|...+-+. ...||.+..+-+++..- ..++.- +-..+.+.
T Consensus 746 ~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YN 825 (895)
T KOG2076|consen 746 YGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYN 825 (895)
T ss_pred echhHhhccchHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 24556778888887765432 23456555555554431 122222 35678889
Q ss_pred HHHHHHhcCCchHHHHHHHHHhhC
Q 046257 675 LSNMYAATGHWQERARVRKLMNDR 698 (838)
Q Consensus 675 l~~~y~~~g~~~~a~~~~~~m~~~ 698 (838)
++.+|-..|-..-|...+++..+-
T Consensus 826 igRayh~~gl~~LA~~YYekvL~~ 849 (895)
T KOG2076|consen 826 IGRAYHQIGLVHLAVSYYEKVLEV 849 (895)
T ss_pred HHHHHHHcccHHHHHHHHHHHhCC
Confidence 999999999999999999988764
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.47 E-value=7.7e-09 Score=114.22 Aligned_cols=505 Identities=13% Similarity=0.146 Sum_probs=331.5
Q ss_pred cCCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHccC---CCCCcchHHHHHHHHHhCCCchHHHHH
Q 046257 90 CLFDHVFGRQVHCECVKSGFARDVNVSTSLVDLYMRTNNVEDGRRVFDDM---NESNVVSWTSLLSGYARNKMNDRVLEL 166 (838)
Q Consensus 90 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m---~~~~~~~~~~li~~~~~~g~~~~A~~l 166 (838)
..|+++.|..++.++++.. +.....|-.|...|-..|+.+++...+--. ...|..-|-.+.....+.|++++|.-.
T Consensus 151 arg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~c 229 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYC 229 (895)
T ss_pred HhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHH
Confidence 3499999999999999886 466778999999999999999998877443 345678899999999999999999999
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHH----HHHhHcCCChhHHHHHHhcCCC
Q 046257 167 FHRMQVEGIKPNSFTFSTVLGVLADEGIVATAVQVHTMVIKNGGEVVTSVCNAL----ISMYLKSKMVRDARAVFDGMED 242 (838)
Q Consensus 167 ~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~l~~~~~~~g~~~~~~~~~~l----i~~y~~~g~~~~A~~~f~~m~~ 242 (838)
|.+..+... ++...+---...|-+.|+...|..-+.++.....+.|..-...+ +..|...++-+.|.+.++....
T Consensus 230 y~rAI~~~p-~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s 308 (895)
T KOG2076|consen 230 YSRAIQANP-SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALS 308 (895)
T ss_pred HHHHHhcCC-cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 999988642 34444455566788899999999999999887643343333333 4455666777888888887654
Q ss_pred --C---CcchHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCCh----------------------hhHH----HHHHHHh
Q 046257 243 --R---DSITWNSMVAGYVTNELHMEAFETFNNMGLAGAELTR----------------------STFV----SVIKLCA 291 (838)
Q Consensus 243 --~---~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----------------------~t~~----~ll~~~~ 291 (838)
. +...+|.++..|.+...++.|......+.....++|. ..|. -+.-+..
T Consensus 309 ~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~ 388 (895)
T KOG2076|consen 309 KEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLV 388 (895)
T ss_pred hccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhh
Confidence 2 4556899999999999999999999888762222221 1111 1222334
Q ss_pred ccCcHHHHHHHHHHHHHhC--CCCChhHHHHHHHHHHcCCChHHHHHHHHhccc---CCCeeehHHHHHHHHHcCChHHH
Q 046257 292 TTKELRLARQLHSQVLKNG--IDFDHNIRTGLMVAYSKCGKMEDASKIFSMMRE---MKDVVSWTAMISGHLQNGAIDLA 366 (838)
Q Consensus 292 ~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~~li~~~~~~g~~~~A 366 (838)
..+..+....+...+.+.. +..+...+.-+.++|...|++.+|.++|..+.. ..+...|-.+..+|...|..++|
T Consensus 389 ~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A 468 (895)
T KOG2076|consen 389 HLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEA 468 (895)
T ss_pred cccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHH
Confidence 5566666667777777776 445677899999999999999999999999975 23567899999999999999999
Q ss_pred HHHHHHhhhcCCCCCcccHHHHHhhCCCCChhHHHHHHHHhhccCCcchhhHHHHHHHHcCCHHHHHHHHHhcCCCCcc-
Q 046257 367 VNFFCQMTREGVRPNGFTYSIILTAQPAVSPFQVHAHIIKTNYEKSFSVGTALLNAYVKKGILDEAAKVFELIDEKDIV- 445 (838)
Q Consensus 367 ~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~- 445 (838)
.+.|...... .|+..-- ..+|...|.+.|+.++|.+++..+..+|..
T Consensus 469 ~e~y~kvl~~--~p~~~D~------------------------------Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~ 516 (895)
T KOG2076|consen 469 IEFYEKVLIL--APDNLDA------------------------------RITLASLYQQLGNHEKALETLEQIINPDGRN 516 (895)
T ss_pred HHHHHHHHhc--CCCchhh------------------------------hhhHHHHHHhcCCHHHHHHHHhcccCCCccc
Confidence 9999999873 4443322 236777899999999999999998766521
Q ss_pred ----hH-------HHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCc
Q 046257 446 ----AW-------SAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFHACSIKAKLNNA 514 (838)
Q Consensus 446 ----~~-------~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (838)
.| -.....|.+.|+.++=+.+-.+|..... ....+ + ......+.. .....+....
T Consensus 517 ~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~------~~~~~--f----~~~~k~r~~--~~~~~~~~~~ 582 (895)
T KOG2076|consen 517 AEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFL------KKRYI--F----PRNKKKRRR--AIAGTTSKRY 582 (895)
T ss_pred hhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH------HHHHh--c----chHHHHHHH--hhcccccccc
Confidence 11 2234556667777775555555543210 00000 0 000000000 0000001111
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHH--------hcCCCCHHHH----HHHHHHHHHcCChHHHHHHHHHHHHcCCC--CC
Q 046257 515 LCVSSALVTMYSKKGNIESASEVFK--------RQRKRDLVSW----NSMICGYAQHGHTKKALEVFKEMRRQDLE--FD 580 (838)
Q Consensus 515 ~~~~~~li~~y~k~g~~~~A~~~f~--------~~~~~~~~~~----~~li~~~~~~g~~~~A~~l~~~m~~~g~~--pd 580 (838)
......++.+-.+.++....++-.. ....-...-| .-+|..+++.|++++|+.+...+.+.... ++
T Consensus 583 ~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~ 662 (895)
T KOG2076|consen 583 SELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDS 662 (895)
T ss_pred chhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccH
Confidence 2222223333333333222221111 1111122223 44677889999999999999988875432 22
Q ss_pred h-h-HHH-HHHHHHhccCCHHHHHHHHHHHHhcCCccCCC---chHHHHHHHHHhcCCHHHHHHHHhh
Q 046257 581 G-I-TFI-GVITACTHAGLVDEGQQYFDIMVNEHHIYPTM---EHYSCMVDLYSRAGMLEKAMDIINR 642 (838)
Q Consensus 581 ~-~-t~~-~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~---~~y~~lv~~l~r~G~~~~A~~~~~~ 642 (838)
. . .+- ..+.++...+++..|..++..|....+...++ ..|++....+.+.|+-.-=..++..
T Consensus 663 ~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~ 730 (895)
T KOG2076|consen 663 EIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMR 730 (895)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 1 232 34556678999999999999998664443332 2456555555555554444444443
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.1e-12 Score=136.63 Aligned_cols=252 Identities=16% Similarity=0.259 Sum_probs=115.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHh-cCC----CCcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCC
Q 046257 418 ALLNAYVKKGILDEAAKVFEL-IDE----KDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAP 492 (838)
Q Consensus 418 ~Li~~y~~~g~~~~A~~~f~~-~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 492 (838)
.+..++.+.|++++|.++++. +.. .|..-|..+.......++.++|++.++++...+.. +...+..++.- ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 456778899999999999954 322 35566777777777899999999999999875432 33444444444 344
Q ss_pred hhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC-----CCCHHHHHHHHHHHHHcCChHHHHH
Q 046257 493 SAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQR-----KRDLVSWNSMICGYAQHGHTKKALE 567 (838)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~ 567 (838)
+..+.+..+.....+.. +++..+..++..|.+.|+++++.++++... +.+...|..+...+.+.|+.++|++
T Consensus 91 -~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~ 167 (280)
T PF13429_consen 91 -GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALR 167 (280)
T ss_dssp ------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHH
T ss_pred -ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 78888887766554432 456677788899999999999999998854 4577889999999999999999999
Q ss_pred HHHHHHHcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHhcCCHHHHHHHHhhCCCC
Q 046257 568 VFKEMRRQDLEFD-GITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDIINRMPFA 646 (838)
Q Consensus 568 l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~ 646 (838)
.|++.++ ..|+ ......++..+...|+.+++.++++...+.. +.++..+..+..+|...|+.++|...+++.
T Consensus 168 ~~~~al~--~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~--~~~~~~~~~la~~~~~lg~~~~Al~~~~~~--- 240 (280)
T PF13429_consen 168 DYRKALE--LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA--PDDPDLWDALAAAYLQLGRYEEALEYLEKA--- 240 (280)
T ss_dssp HHHHHHH--H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHH---
T ss_pred HHHHHHH--cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--cCHHHHHHHHHHHhcccccccccccccccc---
Confidence 9999999 6786 5667889999999999999999998887543 556778889999999999999999999987
Q ss_pred CCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHh
Q 046257 647 ASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMN 696 (838)
Q Consensus 647 ~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~ 696 (838)
+..+|+|+.....++.++...|+.++|.++++..-
T Consensus 241 ---------------~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 241 ---------------LKLNPDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp ---------------HHHSTT-HHHHHHHHHHHT----------------
T ss_pred ---------------ccccccccccccccccccccccccccccccccccc
Confidence 78899999999999999999999999999988653
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.8e-09 Score=109.49 Aligned_cols=213 Identities=13% Similarity=0.121 Sum_probs=130.7
Q ss_pred cCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHH
Q 046257 457 IGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASE 536 (838)
Q Consensus 457 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~ 536 (838)
.|+.-.|.+-|+..+.....++.. |.-+-..+... .+.+.....+....+.+ +.++.+|-.-..++.-.+++++|..
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~-~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~a 415 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPAFNSL-YIKRAAAYADE-NQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIA 415 (606)
T ss_pred cCCchhhhhhHHHHHhcCcccchH-HHHHHHHHhhh-hccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHH
Confidence 567777777777776644333331 33333344444 55555666666665544 2244445445555555666777777
Q ss_pred HHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHHHhcCC
Q 046257 537 VFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITACTHAGLVDEGQQYFDIMVNEHH 612 (838)
Q Consensus 537 ~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 612 (838)
=|++.. +.++..|-.+..+.-+.+++++++..|++..++ -|+ ...|+.....+...++++.|.+.|+..++
T Consensus 416 DF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~--- 490 (606)
T KOG0547|consen 416 DFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE--- 490 (606)
T ss_pred HHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh---
Confidence 666554 234455555555555666677777777776663 343 45566666666667777777777766652
Q ss_pred ccCCC---------chHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcC
Q 046257 613 IYPTM---------EHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATG 683 (838)
Q Consensus 613 ~~p~~---------~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g 683 (838)
++|+. -+-..++-+-.+ +++..|.+++++. +++||....+|..|+.+-...|
T Consensus 491 LE~~~~~~~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA------------------~e~Dpkce~A~~tlaq~~lQ~~ 551 (606)
T KOG0547|consen 491 LEPREHLIIVNAAPLVHKALLVLQWK-EDINQAENLLRKA------------------IELDPKCEQAYETLAQFELQRG 551 (606)
T ss_pred hccccccccccchhhhhhhHhhhchh-hhHHHHHHHHHHH------------------HccCchHHHHHHHHHHHHHHHh
Confidence 23331 111111111122 6666666666665 8999999999999999999999
Q ss_pred CchHHHHHHHHHh
Q 046257 684 HWQERARVRKLMN 696 (838)
Q Consensus 684 ~~~~a~~~~~~m~ 696 (838)
+.++|.++|++--
T Consensus 552 ~i~eAielFEksa 564 (606)
T KOG0547|consen 552 KIDEAIELFEKSA 564 (606)
T ss_pred hHHHHHHHHHHHH
Confidence 9999999998754
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.30 E-value=7.5e-09 Score=104.87 Aligned_cols=249 Identities=14% Similarity=0.203 Sum_probs=178.3
Q ss_pred HHHHHcCCHHHHHHHHHhcCCCCcchHHH----H-HHHHHhcC-CchHHHHHHHHhhcCCCCCCHhhHHHHHH--HhcCC
Q 046257 421 NAYVKKGILDEAAKVFELIDEKDIVAWSA----M-LAGYAQIG-DTEGAVKIYRQLTSEGVKPNEFTFSSVIN--ACTAP 492 (838)
Q Consensus 421 ~~y~~~g~~~~A~~~f~~~~~~~~~~~~~----l-i~~~~~~g-~~~~A~~l~~~m~~~g~~p~~~t~~~ll~--a~~~~ 492 (838)
.-|.+.|+++.|.+++.-...+|..+-++ | +--|.+.| ++.+|-+.-+..... |.+.-..+.+ ..+-.
T Consensus 427 ~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~----dryn~~a~~nkgn~~f~ 502 (840)
T KOG2003|consen 427 GELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNI----DRYNAAALTNKGNIAFA 502 (840)
T ss_pred HHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcc----cccCHHHhhcCCceeee
Confidence 35789999999999988887665543322 2 22233333 566666655544331 1111111111 00112
Q ss_pred hhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHH
Q 046257 493 SAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVF 569 (838)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~ 569 (838)
+|+++.+.+.+...+...-.-....+|. .-.|-+.|++++|++.|-++. ..++...-.+.+.|-...+..+|++++
T Consensus 503 ngd~dka~~~ykeal~ndasc~ealfni-glt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~ 581 (840)
T KOG2003|consen 503 NGDLDKAAEFYKEALNNDASCTEALFNI-GLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELL 581 (840)
T ss_pred cCcHHHHHHHHHHHHcCchHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 3899999999988876543323333332 224778999999999997665 567777778888999999999999999
Q ss_pred HHHHHcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHhcCCHHHHHHHHhhC-CCCC
Q 046257 570 KEMRRQDLEF-DGITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDIINRM-PFAA 647 (838)
Q Consensus 570 ~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~~m-~~~~ 647 (838)
.+... +-| |+..++-|...|-+.|+-.+|.+++-.-- .-++-+.++...|..-|....-.++|..+|++. -+.|
T Consensus 582 ~q~~s--lip~dp~ilskl~dlydqegdksqafq~~ydsy--ryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp 657 (840)
T KOG2003|consen 582 MQANS--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSY--RYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQP 657 (840)
T ss_pred HHhcc--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcc--cccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCc
Confidence 88776 555 56788889999999999999999886532 124457888888888889999999999999987 4789
Q ss_pred CHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhh
Q 046257 648 SATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMND 697 (838)
Q Consensus 648 ~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~ 697 (838)
+.+-|.-++++| +.+.|++..|..+++....
T Consensus 658 ~~~kwqlmiasc-------------------~rrsgnyqka~d~yk~~hr 688 (840)
T KOG2003|consen 658 NQSKWQLMIASC-------------------FRRSGNYQKAFDLYKDIHR 688 (840)
T ss_pred cHHHHHHHHHHH-------------------HHhcccHHHHHHHHHHHHH
Confidence 999999999998 7888888888888887764
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.6e-07 Score=93.78 Aligned_cols=114 Identities=15% Similarity=0.180 Sum_probs=57.2
Q ss_pred cCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHH
Q 046257 457 IGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASE 536 (838)
Q Consensus 457 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~ 536 (838)
+.+...|.+++.... |..|-..+|...|.-=-++ +.++..+.++...+..+ +.+..+|.-....=...|+.+.|..
T Consensus 417 q~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL-~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRa 492 (677)
T KOG1915|consen 417 QLNLTGARKILGNAI--GKCPKDKLFKGYIELELQL-REFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARA 492 (677)
T ss_pred HcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHH-hhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHH
Confidence 344444444444333 3344444444444433333 44444444444444433 2233444444444445566666666
Q ss_pred HHHhcC-CC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 046257 537 VFKRQR-KR----DLVSWNSMICGYAQHGHTKKALEVFKEMRR 574 (838)
Q Consensus 537 ~f~~~~-~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 574 (838)
+|+-.. +| ....|-+.|.-=...|.+++|..+|+++++
T Consensus 493 ifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~ 535 (677)
T KOG1915|consen 493 IFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLD 535 (677)
T ss_pred HHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHH
Confidence 666443 22 234566666666666666666666666666
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.27 E-value=4.4e-09 Score=115.37 Aligned_cols=254 Identities=13% Similarity=0.038 Sum_probs=167.8
Q ss_pred HHHHHHcCCHHHHHHHHHhcCC--CCc--chHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCH-hhHHHHHHHhcCChh
Q 046257 420 LNAYVKKGILDEAAKVFELIDE--KDI--VAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNE-FTFSSVINACTAPSA 494 (838)
Q Consensus 420 i~~y~~~g~~~~A~~~f~~~~~--~~~--~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~~~ 494 (838)
...+...|+.+.|.+.+....+ ++. ...-.....+.+.|++++|++.++++.+. .|+. .....+...+... +
T Consensus 125 A~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~--~P~~~~~l~ll~~~~~~~-~ 201 (409)
T TIGR00540 125 AEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEM--APRHKEVLKLAEEAYIRS-G 201 (409)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHH-h
Confidence 3445566777777777776532 222 12222356666677777777777777764 3433 3444555555555 7
Q ss_pred hHHHHHHHHHHHHHhcCCCchhHHH-------HHHHHHHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHHcCChHH
Q 046257 495 AVEQGKQFHACSIKAKLNNALCVSS-------ALVTMYSKKGNIESASEVFKRQRK---RDLVSWNSMICGYAQHGHTKK 564 (838)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~~~~~~~-------~li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~ 564 (838)
+.+.+......+.+.+..+...... .+++.-......+...++++..+. .+...+..+...+...|+.++
T Consensus 202 d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~ 281 (409)
T TIGR00540 202 AWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDS 281 (409)
T ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHH
Confidence 7777777777777765443322211 111111222234455555666653 488899999999999999999
Q ss_pred HHHHHHHHHHcCCCCChhHH---HHHHHHHhccCCHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHhcCCHHHHHHHHh
Q 046257 565 ALEVFKEMRRQDLEFDGITF---IGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDIIN 641 (838)
Q Consensus 565 A~~l~~~m~~~g~~pd~~t~---~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~ 641 (838)
|.+++++..+ ..||.... ..........++.+.+.+.++...+...-.|+.....++..++.+.|++++|.+.|+
T Consensus 282 A~~~l~~~l~--~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le 359 (409)
T TIGR00540 282 AQEIIFDGLK--KLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFK 359 (409)
T ss_pred HHHHHHHHHh--hCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 9999999999 45665421 222222344688899999998887554333332556789999999999999999999
Q ss_pred hCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHH
Q 046257 642 RMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLM 695 (838)
Q Consensus 642 ~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m 695 (838)
+.. .++.+| ++..+..++.++.+.|+.++|.+++++-
T Consensus 360 ~a~----------------a~~~~p-~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 360 NVA----------------ACKEQL-DANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HhH----------------HhhcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 421 156677 5555779999999999999999999875
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=6e-09 Score=113.64 Aligned_cols=281 Identities=10% Similarity=0.029 Sum_probs=158.0
Q ss_pred CCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCChh--HHHHHHHHHHcCCChHHHH
Q 046257 258 NELHMEAFETFNNMGLAGAELTRSTFVSVIKLCATTKELRLARQLHSQVLKNGIDFDHN--IRTGLMVAYSKCGKMEDAS 335 (838)
Q Consensus 258 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~Li~~y~~~g~~~~A~ 335 (838)
.|++++|.+.+....+..-.| ...|.....+..+.|+.+.+.+.+..+.+. .|+.. ........+...|+.++|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 466666666655543321111 222333344446667777777777777654 33332 2223456777888888888
Q ss_pred HHHHhccc--CCCeeehHHHHHHHHHcCChHHHHHHHHHhhhcCCCCCcccHHHHHhhCCCCChhHHHHHHHHhhccCCc
Q 046257 336 KIFSMMRE--MKDVVSWTAMISGHLQNGAIDLAVNFFCQMTREGVRPNGFTYSIILTAQPAVSPFQVHAHIIKTNYEKSF 413 (838)
Q Consensus 336 ~~f~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~ 413 (838)
..++.+.+ +.+......+...|.+.|++++|.+++..+.+.+..++. .+..+-.
T Consensus 174 ~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l~~----------------------- 229 (398)
T PRK10747 174 HGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAMLEQ----------------------- 229 (398)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHHHH-----------------------
Confidence 88877754 345566777888888888888888888888876544322 1110000
Q ss_pred chhhHHHHHHHHcCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhc
Q 046257 414 SVGTALLNAYVKKGILDEAAKVFELIDE---KDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACT 490 (838)
Q Consensus 414 ~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 490 (838)
.++..++.......+.+...++++.++. .+......+...+...|+.++|.+++++..+. .||.....
T Consensus 230 ~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~~------- 300 (398)
T PRK10747 230 QAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLVL------- 300 (398)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHH-------
Confidence 0001122223333445556666666653 35556677777777777777777777766652 33331110
Q ss_pred CChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHH
Q 046257 491 APSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALE 567 (838)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~ 567 (838)
+......++.+++.+..++.. +.|...+..+...+.+.|++++|.+
T Consensus 301 -------------------------------l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~ 349 (398)
T PRK10747 301 -------------------------------LIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASL 349 (398)
T ss_pred -------------------------------HHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 001112355555555555443 2244455555666666666666666
Q ss_pred HHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHH
Q 046257 568 VFKEMRRQDLEFDGITFIGVITACTHAGLVDEGQQYFDIM 607 (838)
Q Consensus 568 l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m 607 (838)
.|++..+ ..|+..++..+..++.+.|+.++|.+++++-
T Consensus 350 ~le~al~--~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 350 AFRAALK--QRPDAYDYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred HHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6666665 4566666556666666666666666665544
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.1e-09 Score=115.88 Aligned_cols=246 Identities=8% Similarity=-0.027 Sum_probs=149.1
Q ss_pred HhCCChHHHHHHHccCCC--CCcchHH--HHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHH
Q 046257 124 MRTNNVEDGRRVFDDMNE--SNVVSWT--SLLSGYARNKMNDRVLELFHRMQVEGIKPNSFTFSTVLGVLADEGIVATAV 199 (838)
Q Consensus 124 ~~~g~~~~A~~~f~~m~~--~~~~~~~--~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~ 199 (838)
.+.|+++.|...|.++.+ |+....- .....+...|++++|...++++.+... -+...+..+...+.+.|+++++.
T Consensus 129 ~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P-~~~~al~ll~~~~~~~gdw~~a~ 207 (398)
T PRK10747 129 QQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAP-RHPEVLRLAEQAYIRTGAWSSLL 207 (398)
T ss_pred HHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHhHHHHH
Confidence 455666666666655543 2221111 123445555666666666666555431 13344555555555556666666
Q ss_pred HHHHHHHHhCCCCch-------hHHHHHHHHhHcCCChhHHHHHHhcCCC---CCcchHHHHHHHHHhCCChHHHHHHHH
Q 046257 200 QVHTMVIKNGGEVVT-------SVCNALISMYLKSKMVRDARAVFDGMED---RDSITWNSMVAGYVTNELHMEAFETFN 269 (838)
Q Consensus 200 ~l~~~~~~~g~~~~~-------~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~n~li~~~~~~g~~~~A~~l~~ 269 (838)
.++..+.+.+..++. .++..++....+..+.+...++++.+++ .++.....+...+...|+.++|.+.++
T Consensus 208 ~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~ 287 (398)
T PRK10747 208 DILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIIL 287 (398)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 666666555432211 1233334444444555666666666654 356667777777888888888888887
Q ss_pred HhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHHhccc-CCCee
Q 046257 270 NMGLAGAELTRSTFVSVIKLCATTKELRLARQLHSQVLKNGIDFDHNIRTGLMVAYSKCGKMEDASKIFSMMRE-MKDVV 348 (838)
Q Consensus 270 ~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~-~~~~~ 348 (838)
+..+. .|+.. ..++.+....++.+.+.+..+...+.. +.|......+...+.+.+++++|.+.|+...+ .|+..
T Consensus 288 ~~l~~--~~~~~--l~~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~ 362 (398)
T PRK10747 288 DGLKR--QYDER--LVLLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAY 362 (398)
T ss_pred HHHhc--CCCHH--HHHHHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHH
Confidence 77653 34432 122333345577777777777777664 45666777888888888888888888888754 46767
Q ss_pred ehHHHHHHHHHcCChHHHHHHHHHhhh
Q 046257 349 SWTAMISGHLQNGAIDLAVNFFCQMTR 375 (838)
Q Consensus 349 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 375 (838)
.+-.+...+.+.|+.++|.+++++-..
T Consensus 363 ~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 363 DYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 777788888888888888888876643
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.9e-11 Score=89.14 Aligned_cols=50 Identities=32% Similarity=0.631 Sum_probs=48.3
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHhc
Q 046257 544 RDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGITFIGVITACTH 593 (838)
Q Consensus 544 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~ 593 (838)
||+++||++|.+|+++|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 79999999999999999999999999999999999999999999999974
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.24 E-value=6.7e-10 Score=118.81 Aligned_cols=264 Identities=15% Similarity=0.171 Sum_probs=205.6
Q ss_pred CHHHHHHHHHhcCCC--Ccc-hHHHHHHHHHhcCCchHHHHHHHHhhcCC-C-CCCHhhHHHHHHHhcCChhhHHHHHHH
Q 046257 428 ILDEAAKVFELIDEK--DIV-AWSAMLAGYAQIGDTEGAVKIYRQLTSEG-V-KPNEFTFSSVINACTAPSAAVEQGKQF 502 (838)
Q Consensus 428 ~~~~A~~~f~~~~~~--~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~-~p~~~t~~~ll~a~~~~~~~~~~~~~~ 502 (838)
+..+|...|..+++. |+. ....+..+|-..+++++|.++|+...+.. . .-+..+|+++|--.- ..++. ..
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq---~~v~L--s~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQ---DEVAL--SY 408 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHH---hhHHH--HH
Confidence 467899999887653 443 23446788889999999999999987631 1 124467777764321 11211 11
Q ss_pred HHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC
Q 046257 503 HACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQRK--R-DLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEF 579 (838)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 579 (838)
...-+-..-+..+.+|-++.+.|+-+++.+.|++.|++... | ...+|+.+..-+.....+|+|...|+..+. +.|
T Consensus 409 Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~ 486 (638)
T KOG1126|consen 409 LAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDP 486 (638)
T ss_pred HHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCc
Confidence 22212222355789999999999999999999999998873 3 568888888889999999999999999887 777
Q ss_pred Ch-hHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCC-CchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHH
Q 046257 580 DG-ITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPT-MEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLA 657 (838)
Q Consensus 580 d~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~ 657 (838)
++ ..|-++...|.+.++++.|.-.|+.++ .+.|. .....++...+-+.|+.|+|+++++++
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A-------------- 549 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKA-------------- 549 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHH--------------
Confidence 75 478888999999999999999999887 56774 556777888999999999999999988
Q ss_pred HHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhhCCCccCCceeEEEECCEEEEEeeCCCCCCChHHHHHHHHH
Q 046257 658 ACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMNDRKVKKEAGYSWIEVKNKTYSFLAGDISHPQSNQIYSKLEE 737 (838)
Q Consensus 658 ~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~~~~~s~i~~~~~~~~f~~~~~~~~~~~~i~~~l~~ 737 (838)
+-++|.|+-.-+..+.++...|++++|...+++.++- -|+-.-++..+.+
T Consensus 550 ----~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~--------------------------vP~es~v~~llgk 599 (638)
T KOG1126|consen 550 ----IHLDPKNPLCKYHRASILFSLGRYVEALQELEELKEL--------------------------VPQESSVFALLGK 599 (638)
T ss_pred ----HhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHh--------------------------CcchHHHHHHHHH
Confidence 7889999999999999999999999999999999862 3566667777777
Q ss_pred HHHHHHHc
Q 046257 738 LSTRLKDA 745 (838)
Q Consensus 738 l~~~~~~~ 745 (838)
+.++|+..
T Consensus 600 i~k~~~~~ 607 (638)
T KOG1126|consen 600 IYKRLGNT 607 (638)
T ss_pred HHHHHccc
Confidence 77766543
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.21 E-value=6.3e-08 Score=99.20 Aligned_cols=354 Identities=15% Similarity=0.159 Sum_probs=214.3
Q ss_pred CCCCchhHHHHHHHHhHcCCChhHHHHHHhcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCChhhH--HHH
Q 046257 209 GGEVVTSVCNALISMYLKSKMVRDARAVFDGMEDRDSITWNSMVAGYVTNELHMEAFETFNNMGLAGAELTRSTF--VSV 286 (838)
Q Consensus 209 g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~--~~l 286 (838)
+...|.+.+-...-.+-+.|....|+..|-.....-+.-|.+-+...--..+.+.+..+. .|...|..-+ -.+
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~-----~~l~~~~h~M~~~F~ 233 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILV-----VGLPSDMHWMKKFFL 233 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHH-----hcCcccchHHHHHHH
Confidence 335555555444555666788888888887766555555655444322222222222211 1122221111 123
Q ss_pred HHHHhccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHHhcccCCC------eeehHHHHHHHHHc
Q 046257 287 IKLCATTKELRLARQLHSQVLKNGIDFDHNIRTGLMVAYSKCGKMEDASKIFSMMREMKD------VVSWTAMISGHLQN 360 (838)
Q Consensus 287 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~------~~~~~~li~~~~~~ 360 (838)
..++......+++.+=.......|++.+...-+-...++-...++++|+.+|+++. ..| ..+|..++ |+++
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~-knDPYRl~dmdlySN~L--Yv~~ 310 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIR-KNDPYRLDDMDLYSNVL--YVKN 310 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHH-hcCCCcchhHHHHhHHH--HHHh
Confidence 44555666777788877888888877777766666677777788888888888887 323 33444433 2222
Q ss_pred CChHHHHHHHHHhhh--cCCCCCcccHHHHHhhCCCCChhHHHHHHHHhhccCCcchhhHHHHHHHHcCCHHHHHHHHHh
Q 046257 361 GAIDLAVNFFCQMTR--EGVRPNGFTYSIILTAQPAVSPFQVHAHIIKTNYEKSFSVGTALLNAYVKKGILDEAAKVFEL 438 (838)
Q Consensus 361 g~~~~A~~l~~~m~~--~g~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~ 438 (838)
.+.. +.++.+-.. ...+| .++..+.+-|+-.++.++|...|+.
T Consensus 311 ~~sk--Ls~LA~~v~~idKyR~---------------------------------ETCCiIaNYYSlr~eHEKAv~YFkR 355 (559)
T KOG1155|consen 311 DKSK--LSYLAQNVSNIDKYRP---------------------------------ETCCIIANYYSLRSEHEKAVMYFKR 355 (559)
T ss_pred hhHH--HHHHHHHHHHhccCCc---------------------------------cceeeehhHHHHHHhHHHHHHHHHH
Confidence 2211 111111110 11222 2334566778888999999999998
Q ss_pred cCCC---CcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCch
Q 046257 439 IDEK---DIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFHACSIKAKLNNAL 515 (838)
Q Consensus 439 ~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (838)
..+- -...|+.|..-|....+...|++-++...+-. +.|-..|-.
T Consensus 356 ALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYG------------------------------- 403 (559)
T KOG1155|consen 356 ALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYG------------------------------- 403 (559)
T ss_pred HHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhh-------------------------------
Confidence 7653 45689999999999999999999999887631 223333433
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHh
Q 046257 516 CVSSALVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGITFIGVITACT 592 (838)
Q Consensus 516 ~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~ 592 (838)
|..+|.-.+...-|+-.|++.. +.|...|.+|..+|.+.++.++|++.|......| +.+...+..|...+-
T Consensus 404 -----LGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye 477 (559)
T KOG1155|consen 404 -----LGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYE 477 (559)
T ss_pred -----hhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHH
Confidence 4445555566666666676554 4477778888888888888888888887777765 335567777777777
Q ss_pred ccCCHHHHHHHHHHHHhcC---C-ccC-CCchHHHHHHHHHhcCCHHHHHHHHhhC
Q 046257 593 HAGLVDEGQQYFDIMVNEH---H-IYP-TMEHYSCMVDLYSRAGMLEKAMDIINRM 643 (838)
Q Consensus 593 ~~g~~~~a~~~~~~m~~~~---~-~~p-~~~~y~~lv~~l~r~G~~~~A~~~~~~m 643 (838)
+.++.++|.++|..-++.. | +.| ....-.-|..-+-+.+++++|.......
T Consensus 478 ~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~ 533 (559)
T KOG1155|consen 478 ELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLV 533 (559)
T ss_pred HHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 7778888877776655422 1 222 1122222445566777777777765543
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.1e-08 Score=100.12 Aligned_cols=306 Identities=15% Similarity=0.163 Sum_probs=222.2
Q ss_pred HcCChHHHHHHHHHhhhcCCCCCcccHHHHHhhCCCCChhHHHHHHHHhhccCCcchhhHHHHHHHHcCCHHHHHHHHHh
Q 046257 359 QNGAIDLAVNFFCQMTREGVRPNGFTYSIILTAQPAVSPFQVHAHIIKTNYEKSFSVGTALLNAYVKKGILDEAAKVFEL 438 (838)
Q Consensus 359 ~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~ 438 (838)
-+.+.++|.++|-+|.+. |..||-. --+|.+.|.+.|.+|.|.++.+.
T Consensus 47 Ls~Q~dKAvdlF~e~l~~----d~~t~e~----------------------------~ltLGnLfRsRGEvDRAIRiHQ~ 94 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQE----DPETFEA----------------------------HLTLGNLFRSRGEVDRAIRIHQT 94 (389)
T ss_pred hhcCcchHHHHHHHHHhc----CchhhHH----------------------------HHHHHHHHHhcchHHHHHHHHHH
Confidence 357889999999999873 4444421 13688889999999999999988
Q ss_pred cCCCCcch-------HHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCChhhHHHHHHHHHHHHHhcC
Q 046257 439 IDEKDIVA-------WSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFHACSIKAKL 511 (838)
Q Consensus 439 ~~~~~~~~-------~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~ 511 (838)
+.++...| .-.|..-|...|-++.|.++|..+.+.|.. -......++.-|-.. ...+.|...-..+.+.+-
T Consensus 95 L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~ef-a~~AlqqLl~IYQ~t-reW~KAId~A~~L~k~~~ 172 (389)
T COG2956 95 LLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEF-AEGALQQLLNIYQAT-REWEKAIDVAERLVKLGG 172 (389)
T ss_pred HhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhh-hHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHcCC
Confidence 76543333 344667778889999999999998875422 223455566666666 888888888887777665
Q ss_pred CCc----hhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC--hh
Q 046257 512 NNA----LCVSSALVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD--GI 582 (838)
Q Consensus 512 ~~~----~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd--~~ 582 (838)
.+. ...|--|...+.-..+.+.|..++.+.. ++++..--.+...+...|++++|++.++...+. .|+ ..
T Consensus 173 q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ--n~~yl~e 250 (389)
T COG2956 173 QTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQ--NPEYLSE 250 (389)
T ss_pred ccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHh--ChHHHHH
Confidence 443 2334456666666788999999998876 334444445667888999999999999999995 455 45
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHhcCCHHHHHHHH-hhCCCCCCHHHHHHHHHHHHH
Q 046257 583 TFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDII-NRMPFAASATVWRTVLAACRL 661 (838)
Q Consensus 583 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~-~~m~~~~~~~~w~~ll~~c~~ 661 (838)
+...|..+|.+.|+.+++...+..+.+. .+..+.-..+.+.-....-.++|...+ +...-+|+...+..|+..
T Consensus 251 vl~~L~~~Y~~lg~~~~~~~fL~~~~~~---~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~--- 324 (389)
T COG2956 251 VLEMLYECYAQLGKPAEGLNFLRRAMET---NTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDY--- 324 (389)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHc---cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHh---
Confidence 6778889999999999999999988743 456666666666655555556666655 445556766555555443
Q ss_pred hccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhhCCCccCCceeEEEECCEEEEEee
Q 046257 662 ISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMNDRKVKKEAGYSWIEVKNKTYSFLA 720 (838)
Q Consensus 662 ~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~~~~~s~i~~~~~~~~f~~ 720 (838)
.-. =+..|+|++...+.+.|....++..|.+..-..+-++|+|.-
T Consensus 325 ---~l~-----------daeeg~~k~sL~~lr~mvge~l~~~~~YRC~~CGF~a~~l~W 369 (389)
T COG2956 325 ---HLA-----------DAEEGRAKESLDLLRDMVGEQLRRKPRYRCQNCGFTAHTLYW 369 (389)
T ss_pred ---hhc-----------cccccchhhhHHHHHHHHHHHHhhcCCceecccCCcceeeee
Confidence 111 134578999999999999999999999999999999999873
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.21 E-value=5.6e-11 Score=123.68 Aligned_cols=255 Identities=15% Similarity=0.064 Sum_probs=98.3
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHcCCCCCc-ccHHHHHHHhccCCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhC
Q 046257 48 RLLFEYCRDSLHQEALNLFLGIRRLGLPLFG-STLSSVLKTCGCLFDHVFGRQVHCECVKSGFARDVNVSTSLVDLYMRT 126 (838)
Q Consensus 48 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 126 (838)
.+...+.+.|++++|++++.+......+|+. .-|..+...+...++.+.|.+.++.+...+.. ++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 3456777899999999999665444323443 34444445566778999999999998877643 66677777777 688
Q ss_pred CChHHHHHHHccCCC--CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCC-CCCChhhHHHHHHHHhcCCChHHHHHHHH
Q 046257 127 NNVEDGRRVFDDMNE--SNVVSWTSLLSGYARNKMNDRVLELFHRMQVEG-IKPNSFTFSTVLGVLADEGIVATAVQVHT 203 (838)
Q Consensus 127 g~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~~~~~~g~~~~a~~l~~ 203 (838)
+++++|.+++...-+ ++...|..++..+.+.++++++.++++...... .+++...|..+...+.+.|+.++|...++
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999988876543 566678888888999999999999998876533 34566677778888888999999999999
Q ss_pred HHHHhCCCCchhHHHHHHHHhHcCCChhHHHHHHhcCC---CCCcchHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCCh
Q 046257 204 MVIKNGGEVVTSVCNALISMYLKSKMVRDARAVFDGME---DRDSITWNSMVAGYVTNELHMEAFETFNNMGLAGAELTR 280 (838)
Q Consensus 204 ~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~---~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 280 (838)
.+++.. +.|..+.+.++..+...|+.+++.+++.... ..|...|..+..+|...|+.++|+..|++..... +.|.
T Consensus 171 ~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~ 248 (280)
T PF13429_consen 171 KALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDP 248 (280)
T ss_dssp HHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-H
T ss_pred HHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccc-cccc
Confidence 998886 4467788888888888888888777776543 3466777888888888888888888888876531 2244
Q ss_pred hhHHHHHHHHhccCcHHHHHHHHHHH
Q 046257 281 STFVSVIKLCATTKELRLARQLHSQV 306 (838)
Q Consensus 281 ~t~~~ll~~~~~~~~~~~a~~~~~~~ 306 (838)
.+...+..++...|+.++|.++..++
T Consensus 249 ~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 249 LWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHHHHHHHT---------------
T ss_pred cccccccccccccccccccccccccc
Confidence 45555566666666666666655544
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.20 E-value=6.4e-06 Score=88.04 Aligned_cols=513 Identities=15% Similarity=0.175 Sum_probs=303.3
Q ss_pred CcccHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcccHHHHHHH--------hccCCChhhHHHHHHHHHHhCCCCCh
Q 046257 42 NFVEYNRLLFEYCRDSLHQEALNLFLGIRRLGLPLFGSTLSSVLKT--------CGCLFDHVFGRQVHCECVKSGFARDV 113 (838)
Q Consensus 42 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~--------~~~~~~~~~a~~~~~~~~~~g~~~~~ 113 (838)
++-+|-.-|..-.. .-..+-.-+|++..+. ++-+-..|..-|++ |--...+......|+..+... ..-+
T Consensus 26 svk~W~RYIe~k~~-sp~k~~~~lYERal~~-lp~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er~lv~m-Hkmp 102 (835)
T KOG2047|consen 26 SVKCWLRYIEHKAG-SPDKQRNLLYERALKE-LPGSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFERCLVFM-HKMP 102 (835)
T ss_pred hHHHHHHHHHHHcc-CChHHHHHHHHHHHHH-CCCchHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHH-hcCC
Confidence 45567777765443 2233344556665543 22233333333321 111111222223333322211 1345
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHccCCC-----CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 046257 114 NVSTSLVDLYMRTNNVEDGRRVFDDMNE-----SNVVSWTSLLSGYARNKMNDRVLELFHRMQVEGIKPNSFTFSTVLGV 188 (838)
Q Consensus 114 ~~~~~li~~y~~~g~~~~A~~~f~~m~~-----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~ 188 (838)
.+|-..+....+.|++..-+..|+.... .....|...+.-....|-++-++.+|++..+- ++..-.--+.-
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~ 178 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEY 178 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHH
Confidence 6777788888889999999999987543 23346888888888899999999999998763 33335566777
Q ss_pred HhcCCChHHHHHHHHHHHHhC------CCCchhHHHHHHHHhHcCCC---hhHHHHHHhcCCCC--C--cchHHHHHHHH
Q 046257 189 LADEGIVATAVQVHTMVIKNG------GEVVTSVCNALISMYLKSKM---VRDARAVFDGMEDR--D--SITWNSMVAGY 255 (838)
Q Consensus 189 ~~~~g~~~~a~~l~~~~~~~g------~~~~~~~~~~li~~y~~~g~---~~~A~~~f~~m~~~--~--~~~~n~li~~~ 255 (838)
++..+++++|.+.+..++... .+.+-..|.-+-+..++.-+ --....++..+..+ | ...|++|..-|
T Consensus 179 L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYY 258 (835)
T KOG2047|consen 179 LAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYY 258 (835)
T ss_pred HHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHH
Confidence 788899999999888776431 14455566666666665432 23344555555542 3 34689999999
Q ss_pred HhCCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHhCC-CCChhHHHHHHHHHHcCCChHHH
Q 046257 256 VTNELHMEAFETFNNMGLAGAELTRSTFVSVIKLCATTKELRLARQLHSQVLKNGI-DFDHNIRTGLMVAYSKCGKMEDA 334 (838)
Q Consensus 256 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~Li~~y~~~g~~~~A 334 (838)
.+.|.+++|.++|++-... ..+..-|+.+..+|++...-..+..+- ...+.+. .-+.. +++-.
T Consensus 259 Ir~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me-~a~~~~~n~ed~~-------------dl~~~ 322 (835)
T KOG2047|consen 259 IRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKME-LADEESGNEEDDV-------------DLELH 322 (835)
T ss_pred HHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHh-hhhhcccChhhhh-------------hHHHH
Confidence 9999999999999887654 234444666666666543322222211 0111111 11111 12222
Q ss_pred HHHHHhccc--------------CCCeeehHHHHHHHHHcCChHHHHHHHHHhhhcCCCCCcccHHHHHhhCCCCChhHH
Q 046257 335 SKIFSMMRE--------------MKDVVSWTAMISGHLQNGAIDLAVNFFCQMTREGVRPNGFTYSIILTAQPAVSPFQV 400 (838)
Q Consensus 335 ~~~f~~~~~--------------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~ 400 (838)
..-|+.+.+ ..++..|..-+.. ..|+..+-...|.+.... +.|-...
T Consensus 323 ~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~-vdP~ka~---------------- 383 (835)
T KOG2047|consen 323 MARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT-VDPKKAV---------------- 383 (835)
T ss_pred HHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc-cCcccCC----------------
Confidence 222333221 2344455544332 346667777777776653 3332211
Q ss_pred HHHHHHhhccCCcchhhHHHHHHHHcCCHHHHHHHHHhcCCCCcch-------HHHHHHHHHhcCCchHHHHHHHHhhcC
Q 046257 401 HAHIIKTNYEKSFSVGTALLNAYVKKGILDEAAKVFELIDEKDIVA-------WSAMLAGYAQIGDTEGAVKIYRQLTSE 473 (838)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~-------~~~li~~~~~~g~~~~A~~l~~~m~~~ 473 (838)
..-...|..+.+.|-..|+++.|+.+|++...-+-.+ |..-...=.++.+++.|+++.++....
T Consensus 384 ---------Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~v 454 (835)
T KOG2047|consen 384 ---------GSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHV 454 (835)
T ss_pred ---------CChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC
Confidence 1122355678899999999999999999988754443 444444445677889999988877543
Q ss_pred CCCCC-----------------HhhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHH
Q 046257 474 GVKPN-----------------EFTFSSVINACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASE 536 (838)
Q Consensus 474 g~~p~-----------------~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~ 536 (838)
.-.|. ...|+..++---.. |.++..+.++..+++..+.....+.| ..-.+-...-++++.+
T Consensus 455 P~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~-gtfestk~vYdriidLriaTPqii~N-yAmfLEeh~yfeesFk 532 (835)
T KOG2047|consen 455 PTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESL-GTFESTKAVYDRIIDLRIATPQIIIN-YAMFLEEHKYFEESFK 532 (835)
T ss_pred CCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHhcCCHHHHHH-HHHHHHhhHHHHHHHH
Confidence 21211 11222222222223 77788888888888877654443333 1223445667888999
Q ss_pred HHHhcC----CCCH-HHHHHHHHHHHHc---CChHHHHHHHHHHHHcCCCCChhHHHHHHHHH--hccCCHHHHHHHHHH
Q 046257 537 VFKRQR----KRDL-VSWNSMICGYAQH---GHTKKALEVFKEMRRQDLEFDGITFIGVITAC--THAGLVDEGQQYFDI 606 (838)
Q Consensus 537 ~f~~~~----~~~~-~~~~~li~~~~~~---g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~--~~~g~~~~a~~~~~~ 606 (838)
++++.. -|++ ..||..+.-+.+. -..+.|..+|++.++ |.+|...-+.-|+.|- -.-|....|..++++
T Consensus 533 ~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyer 611 (835)
T KOG2047|consen 533 AYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYER 611 (835)
T ss_pred HHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 998765 4554 4688877655432 257899999999998 7777765444444432 345888888888887
Q ss_pred HH
Q 046257 607 MV 608 (838)
Q Consensus 607 m~ 608 (838)
..
T Consensus 612 at 613 (835)
T KOG2047|consen 612 AT 613 (835)
T ss_pred HH
Confidence 65
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.20 E-value=4.5e-09 Score=115.31 Aligned_cols=280 Identities=9% Similarity=-0.052 Sum_probs=175.0
Q ss_pred cCCChhhHHHHHHHHHHhCCCCChh-HHHHHHHHHHhCCChHHHHHHHccCCC--CCc--chHHHHHHHHHhCCCchHHH
Q 046257 90 CLFDHVFGRQVHCECVKSGFARDVN-VSTSLVDLYMRTNNVEDGRRVFDDMNE--SNV--VSWTSLLSGYARNKMNDRVL 164 (838)
Q Consensus 90 ~~~~~~~a~~~~~~~~~~g~~~~~~-~~~~li~~y~~~g~~~~A~~~f~~m~~--~~~--~~~~~li~~~~~~g~~~~A~ 164 (838)
..|++..|.+......+.. |+.. .+-....++.+.|+.+.|.+.|....+ |+. ...-+....+.+.|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 4567777777666554443 2222 222233455666777777777766432 332 12223355666677777777
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhH-------HHHHHHHhHcCCChhHHHHHH
Q 046257 165 ELFHRMQVEGIKPNSFTFSTVLGVLADEGIVATAVQVHTMVIKNGGEVVTSV-------CNALISMYLKSKMVRDARAVF 237 (838)
Q Consensus 165 ~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~l~~~~~~~g~~~~~~~-------~~~li~~y~~~g~~~~A~~~f 237 (838)
..++.+.+... -+...+..+...+...|+++.+.+++..+.+.+..+.... +..++..-......+...+.+
T Consensus 174 ~~l~~l~~~~P-~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~ 252 (409)
T TIGR00540 174 HGVDKLLEMAP-RHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW 252 (409)
T ss_pred HHHHHHHHhCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 77777766542 1444566666667777777777777777777653322211 111121112223344555566
Q ss_pred hcCCC---CCcchHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCChhhHH-HHHH--HHhccCcHHHHHHHHHHHHHhCC
Q 046257 238 DGMED---RDSITWNSMVAGYVTNELHMEAFETFNNMGLAGAELTRSTFV-SVIK--LCATTKELRLARQLHSQVLKNGI 311 (838)
Q Consensus 238 ~~m~~---~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~-~ll~--~~~~~~~~~~a~~~~~~~~~~g~ 311 (838)
+..++ .+...+-.+...+...|+.++|.+++++..+. .||..... .++. .....++.+.+.+.++...+..
T Consensus 253 ~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~- 329 (409)
T TIGR00540 253 KNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV- 329 (409)
T ss_pred HHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC-
Confidence 66664 36777888888888899999999988888765 34443210 1222 2234577778888887777663
Q ss_pred CCCh--hHHHHHHHHHHcCCChHHHHHHHHh--cc-cCCCeeehHHHHHHHHHcCChHHHHHHHHHhhh
Q 046257 312 DFDH--NIRTGLMVAYSKCGKMEDASKIFSM--MR-EMKDVVSWTAMISGHLQNGAIDLAVNFFCQMTR 375 (838)
Q Consensus 312 ~~~~--~~~~~Li~~y~~~g~~~~A~~~f~~--~~-~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 375 (838)
+-|. ....++...+.+.|++++|.+.|+. .. ..|+...+..+...+.+.|+.++|.+++++-..
T Consensus 330 p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 330 DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3344 5667888899999999999999993 42 267777788888999999999999999987643
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.1e-07 Score=94.28 Aligned_cols=209 Identities=14% Similarity=0.196 Sum_probs=156.0
Q ss_pred CcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHh-------hHHHHHHHh---cCChhhHHHHHHHHHHHHHhcCC
Q 046257 443 DIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEF-------TFSSVINAC---TAPSAAVEQGKQFHACSIKAKLN 512 (838)
Q Consensus 443 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-------t~~~ll~a~---~~~~~~~~~~~~~~~~~~~~~~~ 512 (838)
|-.+|--.+..--..|+.+...++|++.... ++|-.. .|.-+=-+| ... .+.+..++++...++ -++
T Consensus 321 nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~-ed~ertr~vyq~~l~-lIP 397 (677)
T KOG1915|consen 321 NYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEA-EDVERTRQVYQACLD-LIP 397 (677)
T ss_pred CchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHh-hcC
Confidence 5567777788777889999999999998864 555321 111111111 122 678888999988888 345
Q ss_pred CchhHHHHHHHHHH----hcCCHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHH
Q 046257 513 NALCVSSALVTMYS----KKGNIESASEVFKRQR--KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFI 585 (838)
Q Consensus 513 ~~~~~~~~li~~y~----k~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~ 585 (838)
...+++.-+--||+ ++-++..|.+++.... .|..-++...|..=.+.++++....+|++.++ ..|. -.+|.
T Consensus 398 HkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle--~~Pe~c~~W~ 475 (677)
T KOG1915|consen 398 HKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLE--FSPENCYAWS 475 (677)
T ss_pred cccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh--cChHhhHHHH
Confidence 55667766666665 6789999999998776 56777888888888899999999999999999 6665 57888
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHhcCCHHHHHHHHhhC-CCCCCHHHHHHHH
Q 046257 586 GVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDIINRM-PFAASATVWRTVL 656 (838)
Q Consensus 586 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~~m-~~~~~~~~w~~ll 656 (838)
.....-...|+.|.|..+|+..+..-.+......+.+.||.=...|.++.|..++++. ...+...+|-++-
T Consensus 476 kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA 547 (677)
T KOG1915|consen 476 KYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFA 547 (677)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHH
Confidence 8887778899999999999999854333333345788888889999999999999876 2345566787763
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.1e-11 Score=87.95 Aligned_cols=50 Identities=34% Similarity=0.721 Sum_probs=48.0
Q ss_pred CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHHhc
Q 046257 142 SNVVSWTSLLSGYARNKMNDRVLELFHRMQVEGIKPNSFTFSTVLGVLAD 191 (838)
Q Consensus 142 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~ 191 (838)
||+++||++|++|++.|++++|+++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 79999999999999999999999999999999999999999999999874
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.17 E-value=4.3e-09 Score=112.73 Aligned_cols=281 Identities=14% Similarity=0.104 Sum_probs=181.8
Q ss_pred hHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHhCC--CCChhHHHHHHHHHHcCCChH-HHHHH
Q 046257 261 HMEAFETFNNMGLAGAELTRSTFVSVIKLCATTKELRLARQLHSQVLKNGI--DFDHNIRTGLMVAYSKCGKME-DASKI 337 (838)
Q Consensus 261 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~Li~~y~~~g~~~-~A~~~ 337 (838)
..+|+.+|...... +.-+......+-++|...+++++++.+|+.+.+... .-+..+|.+.+.-+-+.=.+. -|..+
T Consensus 335 ~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~L 413 (638)
T KOG1126|consen 335 CREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDL 413 (638)
T ss_pred HHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHH
Confidence 34555555553322 222223344455556666666666666666655431 224445555443332221111 12233
Q ss_pred HHhcccCCCeeehHHHHHHHHHcCChHHHHHHHHHhhhcCCCC-CcccHHHHHhhCCCCChhHHHHHHHHhhccCCcchh
Q 046257 338 FSMMREMKDVVSWTAMISGHLQNGAIDLAVNFFCQMTREGVRP-NGFTYSIILTAQPAVSPFQVHAHIIKTNYEKSFSVG 416 (838)
Q Consensus 338 f~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (838)
.+.. ...+.+|-++..+|.-+++.+.|++.|++... +.| ..++|
T Consensus 414 i~~~--~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYay------------------------------- 458 (638)
T KOG1126|consen 414 IDTD--PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAY------------------------------- 458 (638)
T ss_pred HhhC--CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhh-------------------------------
Confidence 3332 24567888888888888888888888887765 233 23333
Q ss_pred hHHHHHHHHcCCHHHHHHHHHhcCCCCcchHH---HHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCCh
Q 046257 417 TALLNAYVKKGILDEAAKVFELIDEKDIVAWS---AMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPS 493 (838)
Q Consensus 417 ~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~---~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~ 493 (838)
+-+..-+.....+|.|...|+.....|...|| -+...|.+.++++.|.-.|++..+ +.|......
T Consensus 459 TLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--INP~nsvi~---------- 526 (638)
T KOG1126|consen 459 TLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE--INPSNSVIL---------- 526 (638)
T ss_pred hhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhc--CCccchhHH----------
Confidence 33444455667788888888877766655444 467788889999999888888775 455543222
Q ss_pred hhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 046257 494 AAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFK 570 (838)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~ 570 (838)
..+..+|-++|+.|+|+.+|++.. .+|+.+---.+..+...++.++|+..++
T Consensus 527 -------------------------~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LE 581 (638)
T KOG1126|consen 527 -------------------------CHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELE 581 (638)
T ss_pred -------------------------hhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHH
Confidence 123345778899999999998765 5677776667777888899999999999
Q ss_pred HHHHcCCCCCh-hHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCCch
Q 046257 571 EMRRQDLEFDG-ITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEH 619 (838)
Q Consensus 571 ~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~ 619 (838)
++++ +.|+. ..|..+...|.+.|+.+.|+.-|.-|. .+.|....
T Consensus 582 eLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~---~ldpkg~~ 626 (638)
T KOG1126|consen 582 ELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFSWAL---DLDPKGAQ 626 (638)
T ss_pred HHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhHHHh---cCCCccch
Confidence 9999 78886 457777788999999999999998876 34555443
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.4e-06 Score=90.09 Aligned_cols=516 Identities=12% Similarity=0.128 Sum_probs=277.1
Q ss_pred cHHHHHHHHHccCChHHHHHHHHHHHHc-CCCCCcccHHHHHHHhccCCChhhHHHHHHHHHHhCCCCChhHHHHHHHHH
Q 046257 45 EYNRLLFEYCRDSLHQEALNLFLGIRRL-GLPLFGSTLSSVLKTCGCLFDHVFGRQVHCECVKSGFARDVNVSTSLVDLY 123 (838)
Q Consensus 45 ~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 123 (838)
.|-.-+.-+...|+...-...|++.+.. -+.-....|...++.....+-++.+..++++-++.. +...+-.|..+
T Consensus 104 Iwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~----P~~~eeyie~L 179 (835)
T KOG2047|consen 104 IWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVA----PEAREEYIEYL 179 (835)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcC----HHHHHHHHHHH
Confidence 3444445555666666666666665443 223334456666776666777777777777665542 33356666777
Q ss_pred HhCCChHHHHHHHccCCCC----------CcchHHHHHHHHHhCCCchHHHH---HHHHHHHCCCCCCh--hhHHHHHHH
Q 046257 124 MRTNNVEDGRRVFDDMNES----------NVVSWTSLLSGYARNKMNDRVLE---LFHRMQVEGIKPNS--FTFSTVLGV 188 (838)
Q Consensus 124 ~~~g~~~~A~~~f~~m~~~----------~~~~~~~li~~~~~~g~~~~A~~---l~~~m~~~g~~p~~--~t~~~ll~~ 188 (838)
++.+++++|.+.+...... +-..|+-+-...+++.+.-..+. +++.+.. .-||. .-|.+|.+-
T Consensus 180 ~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~--rftDq~g~Lw~SLAdY 257 (835)
T KOG2047|consen 180 AKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIR--RFTDQLGFLWCSLADY 257 (835)
T ss_pred HhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcc--cCcHHHHHHHHHHHHH
Confidence 7777777777777665431 22345555555444433222221 2222211 12332 235555666
Q ss_pred HhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHcCC----------------------ChhHHHHHHhcCCC----
Q 046257 189 LADEGIVATAVQVHTMVIKNGGEVVTSVCNALISMYLKSK----------------------MVRDARAVFDGMED---- 242 (838)
Q Consensus 189 ~~~~g~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g----------------------~~~~A~~~f~~m~~---- 242 (838)
|.+.|.++.|+.++++.+..- ..+.-++.+-+.|+... +++-...-|+.+..
T Consensus 258 YIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~ 335 (835)
T KOG2047|consen 258 YIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPL 335 (835)
T ss_pred HHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccch
Confidence 666666666666666655442 12222222222332211 12222333333222
Q ss_pred -----------CCcchHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCCh------hhHHHHHHHHhccCcHHHHHHHHHH
Q 046257 243 -----------RDSITWNSMVAGYVTNELHMEAFETFNNMGLAGAELTR------STFVSVIKLCATTKELRLARQLHSQ 305 (838)
Q Consensus 243 -----------~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~------~t~~~ll~~~~~~~~~~~a~~~~~~ 305 (838)
.++..|..-+. ...|+..+-...|.+.... +.|-. ..|..+.+.|-..|+++.|+.+|++
T Consensus 336 ~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifek 412 (835)
T KOG2047|consen 336 LLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEK 412 (835)
T ss_pred HHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 13444544333 3456677777777777653 23321 2466677778888999999999998
Q ss_pred HHHhCCCCC---hhHHHHHHHHHHcCCChHHHHHHHHhcccCCCe--------------------eehHHHHHHHHHcCC
Q 046257 306 VLKNGIDFD---HNIRTGLMVAYSKCGKMEDASKIFSMMREMKDV--------------------VSWTAMISGHLQNGA 362 (838)
Q Consensus 306 ~~~~g~~~~---~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~--------------------~~~~~li~~~~~~g~ 362 (838)
..+..++.- ..+|..-..+-.+..+++.|.++.+.....|.. ..|...++.--..|-
T Consensus 413 a~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gt 492 (835)
T KOG2047|consen 413 ATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGT 492 (835)
T ss_pred hhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 887654332 456666667777778888888888776432211 124444444444455
Q ss_pred hHHHHHHHHHhhhcCCCCCcccHHHHHhhCCCCChhHHHHHHHHhhccCCcchhhHHHHHHHHcCCHHHHHHHHHhcCC-
Q 046257 363 IDLAVNFFCQMTREGVRPNGFTYSIILTAQPAVSPFQVHAHIIKTNYEKSFSVGTALLNAYVKKGILDEAAKVFELIDE- 441 (838)
Q Consensus 363 ~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~- 441 (838)
++....+|+++.+..+.......| ..-.+-...-++++.+++++-..
T Consensus 493 festk~vYdriidLriaTPqii~N--------------------------------yAmfLEeh~yfeesFk~YErgI~L 540 (835)
T KOG2047|consen 493 FESTKAVYDRIIDLRIATPQIIIN--------------------------------YAMFLEEHKYFEESFKAYERGISL 540 (835)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHH--------------------------------HHHHHHhhHHHHHHHHHHHcCCcc
Confidence 555555555555543322111111 01112233345666666654332
Q ss_pred ---CCc-chHHHHHHHHHh---cCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCc
Q 046257 442 ---KDI-VAWSAMLAGYAQ---IGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFHACSIKAKLNNA 514 (838)
Q Consensus 442 ---~~~-~~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (838)
|++ ..|++.+.-+.+ .-.++.|..+|++..+ |.+|...-+.-++ |+.
T Consensus 541 Fk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLl--YA~----------------------- 594 (835)
T KOG2047|consen 541 FKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLL--YAK----------------------- 594 (835)
T ss_pred CCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHH--HHH-----------------------
Confidence 222 256665555544 2246666777766665 4444432222221 111
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHH---HH
Q 046257 515 LCVSSALVTMYSKKGNIESASEVFKRQRKR-----DLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGITF---IG 586 (838)
Q Consensus 515 ~~~~~~li~~y~k~g~~~~A~~~f~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~---~~ 586 (838)
.=-+-|-...|.+++++.... -...||..|.--+..=-+....++|++..+ .-||...- .-
T Consensus 595 ---------lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe--~Lp~~~~r~mclr 663 (835)
T KOG2047|consen 595 ---------LEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIE--SLPDSKAREMCLR 663 (835)
T ss_pred ---------HHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHH--hCChHHHHHHHHH
Confidence 112335666677777765421 235688888654443335566788888888 46775432 22
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHhcCCHHHHHHHH
Q 046257 587 VITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDII 640 (838)
Q Consensus 587 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~ 640 (838)
....-++.|.++.|+.++.--.+-....-+.+.|.+.=+-=.|-|+-+--.+++
T Consensus 664 FAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGnedT~keML 717 (835)
T KOG2047|consen 664 FADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNEDTYKEML 717 (835)
T ss_pred HHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHHHHHHHH
Confidence 334457889999999999876543333334566777777778899844444443
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.14 E-value=8e-08 Score=97.20 Aligned_cols=291 Identities=11% Similarity=0.016 Sum_probs=202.4
Q ss_pred CCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHH
Q 046257 258 NELHMEAFETFNNMGLAGAELTRSTFVSVIKLCATTKELRLARQLHSQVLKNGIDFDHNIRTGLMVAYSKCGKMEDASKI 337 (838)
Q Consensus 258 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~ 337 (838)
.|++.+|.++..+-.+.+-.| ...|..-..+.-+.|+.+.+-+++.++.+..-.++..+.-+........|+.+.|+.-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 578888888887766665443 2345666677778889999988888888775567778888888888899999988877
Q ss_pred HHhccc--CCCeeehHHHHHHHHHcCChHHHHHHHHHhhhcCCCCCcccHHHHHhhCCCCChhHHHHHHHHhhccCCcch
Q 046257 338 FSMMRE--MKDVVSWTAMISGHLQNGAIDLAVNFFCQMTREGVRPNGFTYSIILTAQPAVSPFQVHAHIIKTNYEKSFSV 415 (838)
Q Consensus 338 f~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~ 415 (838)
.+++.+ ..++........+|.+.|++.+...++.+|.+.|+--|+..-.. ...+
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~l------------------------e~~a 231 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARL------------------------EQQA 231 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHH------------------------HHHH
Confidence 776643 56777888899999999999999999999999876554322100 0112
Q ss_pred hhHHHHHHHHcCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCC
Q 046257 416 GTALLNAYVKKGILDEAAKVFELIDE---KDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAP 492 (838)
Q Consensus 416 ~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 492 (838)
++.+++-....+..+.-...++..+. .++..-.+++.-+.+.|+.++|.++..+..+.+..|+..++. .|...
T Consensus 232 ~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~----~~l~~ 307 (400)
T COG3071 232 WEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLI----PRLRP 307 (400)
T ss_pred HHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHH----hhcCC
Confidence 23344433334444444456666664 356677788888999999999999999999888777733332 33344
Q ss_pred hhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 046257 493 SAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQR--KRDLVSWNSMICGYAQHGHTKKALEVFK 570 (838)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~ 570 (838)
.+....-+.+-..+.+.+- ++..+.+|...|.|.+.+.+|.+.|+... .++..+|+-+..+|.+.|+.++|.+.++
T Consensus 308 ~d~~~l~k~~e~~l~~h~~--~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~ 385 (400)
T COG3071 308 GDPEPLIKAAEKWLKQHPE--DPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRR 385 (400)
T ss_pred CCchHHHHHHHHHHHhCCC--ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHH
Confidence 1233333333344444443 33777778888888888888888887654 6677888888888888888888888887
Q ss_pred HHHHcCCCC
Q 046257 571 EMRRQDLEF 579 (838)
Q Consensus 571 ~m~~~g~~p 579 (838)
+.+..-..|
T Consensus 386 e~L~~~~~~ 394 (400)
T COG3071 386 EALLLTRQP 394 (400)
T ss_pred HHHHHhcCC
Confidence 766443333
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.3e-07 Score=95.24 Aligned_cols=215 Identities=18% Similarity=0.225 Sum_probs=160.7
Q ss_pred HhcCCchHHHHHHHHhhcCC-CC-CCHhhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHH
Q 046257 455 AQIGDTEGAVKIYRQLTSEG-VK-PNEFTFSSVINACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIE 532 (838)
Q Consensus 455 ~~~g~~~~A~~l~~~m~~~g-~~-p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~ 532 (838)
-...++++|+.+|+++.+.. .+ -|..||+.+|-.-... ..+..--+....+ ..+. +.+...+.+-|+-.++-+
T Consensus 273 y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~-skLs~LA~~v~~i--dKyR--~ETCCiIaNYYSlr~eHE 347 (559)
T KOG1155|consen 273 YNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDK-SKLSYLAQNVSNI--DKYR--PETCCIIANYYSLRSEHE 347 (559)
T ss_pred hhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhh-HHHHHHHHHHHHh--ccCC--ccceeeehhHHHHHHhHH
Confidence 34556777777777776642 11 1345666665432211 1111100111111 1222 344555677888899999
Q ss_pred HHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHHH
Q 046257 533 SASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEF-DGITFIGVITACTHAGLVDEGQQYFDIMV 608 (838)
Q Consensus 533 ~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 608 (838)
+|...|++.. +.-...|+.|..-|....+...|++-|+..++ +.| |...|-+|..+|.-.+...-|+-+|++..
T Consensus 348 KAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd--i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~ 425 (559)
T KOG1155|consen 348 KAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD--INPRDYRAWYGLGQAYEIMKMHFYALYYFQKAL 425 (559)
T ss_pred HHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh--cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHH
Confidence 9999999876 34567899999999999999999999999999 666 67899999999999999999999999886
Q ss_pred hcCCccC-CCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchH
Q 046257 609 NEHHIYP-TMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQE 687 (838)
Q Consensus 609 ~~~~~~p-~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~ 687 (838)
..+| |...|.+|.+.|.+.++++||++-+.+. +...--+..+|+.|+++|-..++.++
T Consensus 426 ---~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykra------------------i~~~dte~~~l~~LakLye~l~d~~e 484 (559)
T KOG1155|consen 426 ---ELKPNDSRLWVALGECYEKLNRLEEAIKCYKRA------------------ILLGDTEGSALVRLAKLYEELKDLNE 484 (559)
T ss_pred ---hcCCCchHHHHHHHHHHHHhccHHHHHHHHHHH------------------HhccccchHHHHHHHHHHHHHHhHHH
Confidence 4567 5678999999999999999999999876 33333367899999999999999999
Q ss_pred HHHHHHHHhh
Q 046257 688 RARVRKLMND 697 (838)
Q Consensus 688 a~~~~~~m~~ 697 (838)
|...+++-.+
T Consensus 485 Aa~~yek~v~ 494 (559)
T KOG1155|consen 485 AAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHH
Confidence 9999987754
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.2e-07 Score=97.78 Aligned_cols=256 Identities=14% Similarity=0.101 Sum_probs=141.3
Q ss_pred CCChhHHHHHHHHHHcCCChHHHHHHHHhccc--CCCeeehHHHHHHHHHcCChHHHHHHHHHhhhcCCCCCcccHHHHH
Q 046257 312 DFDHNIRTGLMVAYSKCGKMEDASKIFSMMRE--MKDVVSWTAMISGHLQNGAIDLAVNFFCQMTREGVRPNGFTYSIIL 389 (838)
Q Consensus 312 ~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll 389 (838)
..++.+...-.+-+...+++.+..++++.+.+ +.+...+..-|..+...|+..+-..+=.+|.+. -|
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~--yP--------- 309 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL--YP--------- 309 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh--CC---------
Confidence 44555666666777777888888888877763 234444555667777778777776666666653 12
Q ss_pred hhCCCCChhHHHHHHHHhhccCCcchhhHHHHHHHHcCCHHHHHHHHHhcCCCCc---chHHHHHHHHHhcCCchHHHHH
Q 046257 390 TAQPAVSPFQVHAHIIKTNYEKSFSVGTALLNAYVKKGILDEAAKVFELIDEKDI---VAWSAMLAGYAQIGDTEGAVKI 466 (838)
Q Consensus 390 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~g~~~~A~~l 466 (838)
....+|-++.--|...|+..+|++.|.....-|. ..|-.....|+-.|..++|+..
T Consensus 310 ---------------------~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaa 368 (611)
T KOG1173|consen 310 ---------------------SKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAA 368 (611)
T ss_pred ---------------------CCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHH
Confidence 2223334566667777899999999987665433 5788889999999999999888
Q ss_pred HHHhhcC--C-CCCCHhhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 046257 467 YRQLTSE--G-VKPNEFTFSSVINACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQRK 543 (838)
Q Consensus 467 ~~~m~~~--g-~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~ 543 (838)
+...-+- | -.|.-+ ..+ -|... ++++.+.+++..+.... +.|+.+.+-+.-++-+.+.+.+|...|+....
T Consensus 369 Y~tAarl~~G~hlP~LY--lgm--ey~~t-~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~ 442 (611)
T KOG1173|consen 369 YFTAARLMPGCHLPSLY--LGM--EYMRT-NNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALE 442 (611)
T ss_pred HHHHHHhccCCcchHHH--HHH--HHHHh-ccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHH
Confidence 7665431 1 112111 111 12222 44455555544444322 33444444444444444555555555543320
Q ss_pred ----------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHH
Q 046257 544 ----------RDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEF-DGITFIGVITACTHAGLVDEGQQYFDIM 607 (838)
Q Consensus 544 ----------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m 607 (838)
.-..+|+.|..+|.+.+..++|+..|++.+. ..| |..|+.++.-.+...|+++.|...|...
T Consensus 443 ~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~--l~~k~~~~~asig~iy~llgnld~Aid~fhKa 515 (611)
T KOG1173|consen 443 VIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALL--LSPKDASTHASIGYIYHLLGNLDKAIDHFHKA 515 (611)
T ss_pred HhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHH--cCCCchhHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 0112344444455555555555555555444 222 2334444444444445555555544443
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.9e-05 Score=88.33 Aligned_cols=564 Identities=14% Similarity=0.160 Sum_probs=288.5
Q ss_pred HHHHHHHHHhCCChHHHHHHHccCCC--CCcchHHHH-----HHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 046257 116 STSLVDLYMRTNNVEDGRRVFDDMNE--SNVVSWTSL-----LSGYARNKMNDRVLELFHRMQVEGIKPNSFTFSTVLGV 188 (838)
Q Consensus 116 ~~~li~~y~~~g~~~~A~~~f~~m~~--~~~~~~~~l-----i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~ 188 (838)
+..+.+.+.+.|-+..|.+.+.++.. +.++ .+.+ +-.|.-.-.++++++.++.|...+++-|..+...+..-
T Consensus 609 ra~IAqLCEKAGL~qraLehytDl~DIKR~vV-hth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatk 687 (1666)
T KOG0985|consen 609 RAEIAQLCEKAGLLQRALEHYTDLYDIKRVVV-HTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATK 687 (1666)
T ss_pred HHHHHHHHHhcchHHHHHHhcccHHHHHHHHH-HhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 45566777888999999988887764 2222 1111 22344444678899999999888888887776666666
Q ss_pred HhcCCChHHHHHHHHHHHH-----------hCCCCchhHHHHHHHHhHcCCChhHHHHHHhcCCC---------------
Q 046257 189 LADEGIVATAVQVHTMVIK-----------NGGEVVTSVCNALISMYLKSKMVRDARAVFDGMED--------------- 242 (838)
Q Consensus 189 ~~~~g~~~~a~~l~~~~~~-----------~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--------------- 242 (838)
|...=..+...++|+.... -++..|+.+.-..|.+-++.|++.+.+++..+-.-
T Consensus 688 y~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL 767 (1666)
T KOG0985|consen 688 YHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKL 767 (1666)
T ss_pred HHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhccc
Confidence 5544444444555544322 13466777778889999999999999888765431
Q ss_pred C----------------CcchH------HHHHHHHHhCCChHHHHHHHHHhhhCCCC-----------CChhhHHHHHHH
Q 046257 243 R----------------DSITW------NSMVAGYVTNELHMEAFETFNNMGLAGAE-----------LTRSTFVSVIKL 289 (838)
Q Consensus 243 ~----------------~~~~~------n~li~~~~~~g~~~~A~~l~~~m~~~g~~-----------p~~~t~~~ll~~ 289 (838)
+ |.+.| -..|..|++.-++...-.+.-.+...... -..+...-+..-
T Consensus 768 ~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~deLv~E 847 (1666)
T KOG0985|consen 768 TDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFPVDELVEE 847 (1666)
T ss_pred cccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHHhccCChHHHHHH
Confidence 0 11221 12345555543332222222211111000 001112234445
Q ss_pred HhccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHH-H---HHH-----hcccCCCee----e-------
Q 046257 290 CATTKELRLARQLHSQVLKNGIDFDHNIRTGLMVAYSKCGKMEDAS-K---IFS-----MMREMKDVV----S------- 349 (838)
Q Consensus 290 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~-~---~f~-----~~~~~~~~~----~------- 349 (838)
+.+.+++..-..+++..+..| ..|..++|+|...|...++-.+-. + .++ +.-+.+|+. .
T Consensus 848 vEkRNRLklLlp~LE~~i~eG-~~d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD 926 (1666)
T KOG0985|consen 848 VEKRNRLKLLLPWLESLIQEG-SQDPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQCD 926 (1666)
T ss_pred HHhhhhHHHHHHHHHHHHhcc-CcchHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccCCc
Confidence 566777777778888888888 468899999999988776544321 0 111 111122211 1
Q ss_pred --------hHHHH----HHHHHcCCh---HHHH--------HHHHHhhhcCCC--CCcccHHHHHhhCCCCChh-HHHHH
Q 046257 350 --------WTAMI----SGHLQNGAI---DLAV--------NFFCQMTREGVR--PNGFTYSIILTAQPAVSPF-QVHAH 403 (838)
Q Consensus 350 --------~~~li----~~~~~~g~~---~~A~--------~l~~~m~~~g~~--pd~~t~~~ll~a~~~~~~~-~~~~~ 403 (838)
=|+|. ..+.+..+. .+.+ .+.++....++. .|+...+..++|+-..+-. ++...
T Consensus 927 ~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIEL 1006 (1666)
T KOG0985|consen 927 LELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIEL 1006 (1666)
T ss_pred HHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHH
Confidence 12332 223333332 2222 344444443332 1222222223332222211 33333
Q ss_pred HHHhhccCCcc-----hhhHHHHHHHHcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCC
Q 046257 404 IIKTNYEKSFS-----VGTALLNAYVKKGILDEAAKVFELIDEKDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPN 478 (838)
Q Consensus 404 ~~~~~~~~~~~-----~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 478 (838)
+.+--++++.+ ..|.|+-.-.|. +.....+..+++..-|.. .+......++-++||..+|++..
T Consensus 1007 LEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyDa~---~ia~iai~~~LyEEAF~ifkkf~------- 1075 (1666)
T KOG0985|consen 1007 LEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYDAP---DIAEIAIENQLYEEAFAIFKKFD------- 1075 (1666)
T ss_pred HHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCCch---hHHHHHhhhhHHHHHHHHHHHhc-------
Confidence 33322333222 222222222221 112222222222221111 11222333444455555554432
Q ss_pred HhhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 046257 479 EFTFSSVINACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQRKRDLVSWNSMICGYAQ 558 (838)
Q Consensus 479 ~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~ 558 (838)
.+....+.|++ .-++++.|.+.-++..+|. .|..+..+-.+
T Consensus 1076 ----------------------------------~n~~A~~VLie---~i~~ldRA~efAe~~n~p~--vWsqlakAQL~ 1116 (1666)
T KOG0985|consen 1076 ----------------------------------MNVSAIQVLIE---NIGSLDRAYEFAERCNEPA--VWSQLAKAQLQ 1116 (1666)
T ss_pred ----------------------------------ccHHHHHHHHH---HhhhHHHHHHHHHhhCChH--HHHHHHHHHHh
Confidence 12222222332 3456777777766665543 47778888888
Q ss_pred cCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHhcCCHHHHHH
Q 046257 559 HGHTKKALEVFKEMRRQDLEFDGITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMD 638 (838)
Q Consensus 559 ~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~ 638 (838)
.|...+|++-|-+. -|+..|..++.++++.|.+++-.+++...+ +..-+|.++ +.|+-+|++.|++.|-++
T Consensus 1117 ~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaR-kk~~E~~id--~eLi~AyAkt~rl~elE~ 1187 (1666)
T KOG0985|consen 1117 GGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMAR-KKVREPYID--SELIFAYAKTNRLTELEE 1187 (1666)
T ss_pred cCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHH-HhhcCccch--HHHHHHHHHhchHHHHHH
Confidence 88888887776321 245668888888888888888888776554 334445444 467777888888888777
Q ss_pred HHhhCCCCCCHHHHHHHHHHHH------HhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhhCCCccCCceeEEEEC
Q 046257 639 IINRMPFAASATVWRTVLAACR------LISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMNDRKVKKEAGYSWIEVK 712 (838)
Q Consensus 639 ~~~~m~~~~~~~~w~~ll~~c~------~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~~~~~s~i~~~ 712 (838)
++. .||..-...+=.-|- .-++-=.+.+.|..|+..+...|.+..|...-++......-|+-+...|+-+
T Consensus 1188 fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~ 1263 (1666)
T KOG0985|consen 1188 FIA----GPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKE 1263 (1666)
T ss_pred Hhc----CCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchh
Confidence 775 233322222222221 0001112556777888888888888888776666555444444443333211
Q ss_pred CEEEEEeeCCCCCCChHHHHHHHHHHHHHHHHcCcc
Q 046257 713 NKTYSFLAGDISHPQSNQIYSKLEELSTRLKDAGYK 748 (838)
Q Consensus 713 ~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~~~g~~ 748 (838)
.|.....+.-..----+.|++|...-++.||-
T Consensus 1264 ----EFrlAQiCGL~iivhadeLeeli~~Yq~rGyF 1295 (1666)
T KOG0985|consen 1264 ----EFRLAQICGLNIIVHADELEELIEYYQDRGYF 1295 (1666)
T ss_pred ----hhhHHHhcCceEEEehHhHHHHHHHHHhcCcH
Confidence 11100000000000025677777766777764
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.1e-07 Score=91.91 Aligned_cols=356 Identities=11% Similarity=0.112 Sum_probs=194.4
Q ss_pred HHHHhccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHHhccc-CCCeeehHHHH-HHHHHcCChH
Q 046257 287 IKLCATTKELRLARQLHSQVLKNGIDFDHNIRTGLMVAYSKCGKMEDASKIFSMMRE-MKDVVSWTAMI-SGHLQNGAID 364 (838)
Q Consensus 287 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~-~~~~~~~~~li-~~~~~~g~~~ 364 (838)
+...-+.++-+.-..+++.+... ..-..+|..+.-..-.+++|..++.++.. .|+-...|.-+ -+|.+..-++
T Consensus 128 fhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYyd 202 (557)
T KOG3785|consen 128 FHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYD 202 (557)
T ss_pred HHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhh
Confidence 33334445555555555444322 12222333333334456667777666542 33444444433 3455666666
Q ss_pred HHHHHHHHhhhcCCCCCcccHHHHHhhCCCCChh--HHHHHHHHhhccCCcchhhHHHHHHHHc-----CCHHHHHHHHH
Q 046257 365 LAVNFFCQMTREGVRPNGFTYSIILTAQPAVSPF--QVHAHIIKTNYEKSFSVGTALLNAYVKK-----GILDEAAKVFE 437 (838)
Q Consensus 365 ~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~--~~~~~~~~~~~~~~~~~~~~Li~~y~~~-----g~~~~A~~~f~ 437 (838)
-+.+++.--.+. -|| .|+..-+.+|....-+ .....- +..+..+....-..+.-.++. ..-+.|.+++-
T Consensus 203 vsqevl~vYL~q--~pd-StiA~NLkacn~fRl~ngr~ae~E-~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP 278 (557)
T KOG3785|consen 203 VSQEVLKVYLRQ--FPD-STIAKNLKACNLFRLINGRTAEDE-KKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLP 278 (557)
T ss_pred hHHHHHHHHHHh--CCC-cHHHHHHHHHHHhhhhccchhHHH-HHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhch
Confidence 666665554442 233 2333334444332221 000000 000000000000111111221 12244555544
Q ss_pred hcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHh-----cCChhhHHHHHHHHHHHHHhcCC
Q 046257 438 LIDEKDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINAC-----TAPSAAVEQGKQFHACSIKAKLN 512 (838)
Q Consensus 438 ~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~-----~~~~~~~~~~~~~~~~~~~~~~~ 512 (838)
.+...=+..--.++--|.+.++..+|..+.+++.- ..|-......+..+- ... ..+..+++++..+-.++..
T Consensus 279 ~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSr-eHlKiAqqffqlVG~Sa~e 355 (557)
T KOG3785|consen 279 SLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSR-EHLKIAQQFFQLVGESALE 355 (557)
T ss_pred HHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcH-HHHHHHHHHHHHhcccccc
Confidence 33322222333455568889999999999887753 456555555554432 122 4566677888877777766
Q ss_pred CchhHH-HHHHHHHHhcCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHH
Q 046257 513 NALCVS-SALVTMYSKKGNIESASEVFKRQR----KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGITFIGV 587 (838)
Q Consensus 513 ~~~~~~-~~li~~y~k~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~l 587 (838)
-|..-. -++...+.-.-++++.+-.++.+. ..|...+| +..+++..|++.+|.++|-+.....++ |..+|.++
T Consensus 356 cDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~ 433 (557)
T KOG3785|consen 356 CDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSM 433 (557)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHH
Confidence 554333 345555556667888888877776 44555554 778899999999999999877654444 55666655
Q ss_pred H-HHHhccCCHHHHHHHHHHHHhcCCccCCCc-hHHHHHHHHHhcCCHHHHHHHHhhC-CCCCCHHHHHHHHHHHH
Q 046257 588 I-TACTHAGLVDEGQQYFDIMVNEHHIYPTME-HYSCMVDLYSRAGMLEKAMDIINRM-PFAASATVWRTVLAACR 660 (838)
Q Consensus 588 l-~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~-~y~~lv~~l~r~G~~~~A~~~~~~m-~~~~~~~~w~~ll~~c~ 660 (838)
+ .++.+.|..+-||.++-.+. -..+.. ....+..-+.++|.+--|-+.|+.+ ...|+.--|..--+||.
T Consensus 434 LArCyi~nkkP~lAW~~~lk~~----t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~pEnWeGKRGACa 505 (557)
T KOG3785|consen 434 LARCYIRNKKPQLAWDMMLKTN----TPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTPENWEGKRGACA 505 (557)
T ss_pred HHHHHHhcCCchHHHHHHHhcC----CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCccccCCccchHH
Confidence 4 56789999999999886653 111222 2333457788889886555554443 23788889999999997
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.8e-07 Score=91.65 Aligned_cols=218 Identities=11% Similarity=0.067 Sum_probs=147.2
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCcccHHHHHHHhccCCChhhHHHHHHHHHHhCCCCC---hhHHHHHHHHHHhCCChHH
Q 046257 55 RDSLHQEALNLFLGIRRLGLPLFGSTLSSVLKTCGCLFDHVFGRQVHCECVKSGFARD---VNVSTSLVDLYMRTNNVED 131 (838)
Q Consensus 55 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~y~~~g~~~~ 131 (838)
-+.++++|+++|-+|.+.. +-+..+-.+|-+.+.+.|..+.|..+|+.+.++.--+. ....-.|-.-|...|-+|.
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 4678899999999998742 22333455667778889999999999998876522111 1234455667888999999
Q ss_pred HHHHHccCCCCCc---chHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChh----hHHHHHHHHhcCCChHHHHHHHHH
Q 046257 132 GRRVFDDMNESNV---VSWTSLLSGYARNKMNDRVLELFHRMQVEGIKPNSF----TFSTVLGVLADEGIVATAVQVHTM 204 (838)
Q Consensus 132 A~~~f~~m~~~~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----t~~~ll~~~~~~g~~~~a~~l~~~ 204 (838)
|+.+|..+.+-.. .+.-.|+..|-+..+|++|++.-+++.+.+-.+... -|.-+........+++.|+.++..
T Consensus 126 AE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 126 AEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 9999998876333 356678899999999999999999888766554432 234444455556677777777777
Q ss_pred HHHhCCCCchhHHHHHHHHhHcCCChhHHHHHHhcCCCCCcc----hHHHHHHHHHhCCChHHHHHHHHHhhhC
Q 046257 205 VIKNGGEVVTSVCNALISMYLKSKMVRDARAVFDGMEDRDSI----TWNSMVAGYVTNELHMEAFETFNNMGLA 274 (838)
Q Consensus 205 ~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~----~~n~li~~~~~~g~~~~A~~l~~~m~~~ 274 (838)
+.+.+ +..+..--.+.+.+...|+++.|.+.++.+.+.|.. +-..+..+|.+.|+.++....+.++.+.
T Consensus 206 Alqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~ 278 (389)
T COG2956 206 ALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET 278 (389)
T ss_pred HHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 77665 334444455556666667777777766666654432 3445556666666666666666666554
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.03 E-value=4.4e-08 Score=98.81 Aligned_cols=195 Identities=18% Similarity=0.208 Sum_probs=152.9
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHH
Q 046257 445 VAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTM 524 (838)
Q Consensus 445 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 524 (838)
..+..+...|...|++++|.+.|++..+. .|+. ...+..+...
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~-----------------------------------~~~~~~la~~ 74 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEH--DPDD-----------------------------------YLAYLALALY 74 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--Cccc-----------------------------------HHHHHHHHHH
Confidence 45677788888899999999999887653 2332 2233345566
Q ss_pred HHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccCCHHHH
Q 046257 525 YSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITACTHAGLVDEG 600 (838)
Q Consensus 525 y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a 600 (838)
|...|++++|.+.|++.. +.+...|..+...|...|++++|++.|++..+....|. ...+..+..++...|++++|
T Consensus 75 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 154 (234)
T TIGR02521 75 YQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKA 154 (234)
T ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHH
Confidence 788899999999988765 44667888889999999999999999999987433333 34566677788899999999
Q ss_pred HHHHHHHHhcCCccC-CCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHH
Q 046257 601 QQYFDIMVNEHHIYP-TMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMY 679 (838)
Q Consensus 601 ~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y 679 (838)
...++...+. .| +...+..+...+...|++++|.+.+++. ++..|.++..+..++.++
T Consensus 155 ~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~------------------~~~~~~~~~~~~~~~~~~ 213 (234)
T TIGR02521 155 EKYLTRALQI---DPQRPESLLELAELYYLRGQYKDARAYLERY------------------QQTYNQTAESLWLGIRIA 213 (234)
T ss_pred HHHHHHHHHh---CcCChHHHHHHHHHHHHcCCHHHHHHHHHHH------------------HHhCCCCHHHHHHHHHHH
Confidence 9999988743 34 3557788889999999999999999987 455677888888899999
Q ss_pred HhcCCchHHHHHHHHHhh
Q 046257 680 AATGHWQERARVRKLMND 697 (838)
Q Consensus 680 ~~~g~~~~a~~~~~~m~~ 697 (838)
...|++++|..+.+.+..
T Consensus 214 ~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 214 RALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHhhHHHHHHHHHHHHh
Confidence 999999999998888764
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.1e-08 Score=101.24 Aligned_cols=166 Identities=17% Similarity=0.236 Sum_probs=139.4
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 046257 514 ALCVSSALVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGITFIGVITA 590 (838)
Q Consensus 514 ~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a 590 (838)
....+..+...|.+.|++++|.+.|++.. +.+...|..+...|...|++++|++.|++..+.+ +.+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 35566778889999999999999999765 3457788999999999999999999999999843 2235667778888
Q ss_pred HhccCCHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCch
Q 046257 591 CTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSA 670 (838)
Q Consensus 591 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~ 670 (838)
+...|++++|.++++..............+..+...+.+.|++++|.+.+++. ++.+|+++.
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~------------------~~~~~~~~~ 170 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRA------------------LQIDPQRPE 170 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHH------------------HHhCcCChH
Confidence 99999999999999999843222223456777889999999999999999987 677898999
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 046257 671 IYVLLSNMYAATGHWQERARVRKLMNDR 698 (838)
Q Consensus 671 ~y~~l~~~y~~~g~~~~a~~~~~~m~~~ 698 (838)
.+..++.+|...|++++|.+.+++..+.
T Consensus 171 ~~~~la~~~~~~~~~~~A~~~~~~~~~~ 198 (234)
T TIGR02521 171 SLLELAELYYLRGQYKDARAYLERYQQT 198 (234)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999988764
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.3e-06 Score=90.86 Aligned_cols=227 Identities=12% Similarity=0.161 Sum_probs=133.2
Q ss_pred HHHHHHHhCCChHHHHHHHccCC--CCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCCh
Q 046257 118 SLVDLYMRTNNVEDGRRVFDDMN--ESNVVSWTSLLSGYARNKMNDRVLELFHRMQVEGIKPNSFTFSTVLGVLADEGIV 195 (838)
Q Consensus 118 ~li~~y~~~g~~~~A~~~f~~m~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 195 (838)
+-|+.|.+.|....|.+.-..-. ..|......+..++.+..-++.|=.+|+.+.. +...+..+.+-..+
T Consensus 620 aaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki~d---------~dkale~fkkgdaf 690 (1636)
T KOG3616|consen 620 AAIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHD---------FDKALECFKKGDAF 690 (1636)
T ss_pred HHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhC---------HHHHHHHHHcccHH
Confidence 45677888888777766543221 23444445555555555555666666665532 11222333333333
Q ss_pred HHHHHHHHHHHHhCCCCchhH-HHHHHHHhHcCCChhHHHHHHhcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHhhhC
Q 046257 196 ATAVQVHTMVIKNGGEVVTSV-CNALISMYLKSKMVRDARAVFDGMEDRDSITWNSMVAGYVTNELHMEAFETFNNMGLA 274 (838)
Q Consensus 196 ~~a~~l~~~~~~~g~~~~~~~-~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~ 274 (838)
.+|.++-+.. ++..++. -..--..+...|+++.|..-|-+.. ..-.-|.+......+.+|+.+++.++..
T Consensus 691 ~kaielarfa----fp~evv~lee~wg~hl~~~~q~daainhfiea~-----~~~kaieaai~akew~kai~ildniqdq 761 (1636)
T KOG3616|consen 691 GKAIELARFA----FPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN-----CLIKAIEAAIGAKEWKKAISILDNIQDQ 761 (1636)
T ss_pred HHHHHHHHhh----CcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh-----hHHHHHHHHhhhhhhhhhHhHHHHhhhh
Confidence 4444433222 1111111 1122223344566666665553321 1122345566778888999988888765
Q ss_pred CCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHHhcccC-CCeeehHHH
Q 046257 275 GAELTRSTFVSVIKLCATTKELRLARQLHSQVLKNGIDFDHNIRTGLMVAYSKCGKMEDASKIFSMMREM-KDVVSWTAM 353 (838)
Q Consensus 275 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~-~~~~~~~~l 353 (838)
. .-.-.|..+...|+..|+++.|+++|-+. ..++.-|+||.+.|++++|.++-.+...+ ..+.+|-+-
T Consensus 762 k--~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiak 830 (1636)
T KOG3616|consen 762 K--TASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAK 830 (1636)
T ss_pred c--cccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHh
Confidence 3 22345777888899999999999888542 34567789999999999999988877622 233446666
Q ss_pred HHHHHHcCChHHHHHHHHHh
Q 046257 354 ISGHLQNGAIDLAVNFFCQM 373 (838)
Q Consensus 354 i~~~~~~g~~~~A~~l~~~m 373 (838)
..-+-++|++.+|.++|-.+
T Consensus 831 aedldehgkf~eaeqlyiti 850 (1636)
T KOG3616|consen 831 AEDLDEHGKFAEAEQLYITI 850 (1636)
T ss_pred HHhHHhhcchhhhhheeEEc
Confidence 66677788888888877544
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.98 E-value=6.9e-07 Score=92.33 Aligned_cols=114 Identities=11% Similarity=0.245 Sum_probs=86.3
Q ss_pred HHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-------hhHHH--HHHHHH
Q 046257 524 MYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD-------GITFI--GVITAC 591 (838)
Q Consensus 524 ~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-------~~t~~--~ll~a~ 591 (838)
+.-|.++++++...|++.. +..+..||-....+...+++++|++.|+...+ +.|+ ..++. +++-.
T Consensus 437 a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~--LE~~~~~~~v~~~plV~Ka~l~~- 513 (606)
T KOG0547|consen 437 ALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE--LEPREHLIIVNAAPLVHKALLVL- 513 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh--hccccccccccchhhhhhhHhhh-
Confidence 3457778999999998876 34567788888889999999999999999888 5665 11121 12211
Q ss_pred hccCCHHHHHHHHHHHHhcCCccCCCc-hHHHHHHHHHhcCCHHHHHHHHhhC
Q 046257 592 THAGLVDEGQQYFDIMVNEHHIYPTME-HYSCMVDLYSRAGMLEKAMDIINRM 643 (838)
Q Consensus 592 ~~~g~~~~a~~~~~~m~~~~~~~p~~~-~y~~lv~~l~r~G~~~~A~~~~~~m 643 (838)
.-.+++.+|.++++... .+.|..+ .|..|..+....|++++|+++|++.
T Consensus 514 qwk~d~~~a~~Ll~KA~---e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEks 563 (606)
T KOG0547|consen 514 QWKEDINQAENLLRKAI---ELDPKCEQAYETLAQFELQRGKIDEAIELFEKS 563 (606)
T ss_pred chhhhHHHHHHHHHHHH---ccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 12488999999999887 4566543 6899999999999999999999975
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.97 E-value=6e-07 Score=90.98 Aligned_cols=292 Identities=11% Similarity=-0.003 Sum_probs=181.7
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCcccHHHHHHHhccCCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHH
Q 046257 55 RDSLHQEALNLFLGIRRLGLPLFGSTLSSVLKTCGCLFDHVFGRQVHCECVKSGFARDVNVSTSLVDLYMRTNNVEDGRR 134 (838)
Q Consensus 55 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~ 134 (838)
-.|+|.+|.++..+-.+.+-. ....|..-.++.-+.|+.+.+-....++.+..-.++..+.-.........|+++.|+.
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 367777777777765554422 2233455555666667777777777766665445555566666666667777777776
Q ss_pred HHccCC---CCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCC
Q 046257 135 VFDDMN---ESNVVSWTSLLSGYARNKMNDRVLELFHRMQVEGIKPNSFTFSTVLGVLADEGIVATAVQVHTMVIKNGGE 211 (838)
Q Consensus 135 ~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~l~~~~~~~g~~ 211 (838)
-.++.. .++........+.|.+.|++.+...+...|.+.|+--|... .++
T Consensus 175 ~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~-----------------~~l---------- 227 (400)
T COG3071 175 NVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEA-----------------ARL---------- 227 (400)
T ss_pred HHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHH-----------------HHH----------
Confidence 665543 35566677777777777777777777777777665433211 000
Q ss_pred CchhHHHHHHHHhHcCCChhHHHHHHhcCCC---CCcchHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCChhhHHHHHH
Q 046257 212 VVTSVCNALISMYLKSKMVRDARAVFDGMED---RDSITWNSMVAGYVTNELHMEAFETFNNMGLAGAELTRSTFVSVIK 288 (838)
Q Consensus 212 ~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 288 (838)
...+++.+++-....+..+.-...++..+. .++..--+++.-+.+.|+.++|.++..+-.+.+..|+.. .+-
T Consensus 228 -e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~ 302 (400)
T COG3071 228 -EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RLI 302 (400)
T ss_pred -HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HHH
Confidence 012333344433333334443444444443 244555566666777777777777777776666555522 223
Q ss_pred HHhccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHHhccc-CCCeeehHHHHHHHHHcCChHHHH
Q 046257 289 LCATTKELRLARQLHSQVLKNGIDFDHNIRTGLMVAYSKCGKMEDASKIFSMMRE-MKDVVSWTAMISGHLQNGAIDLAV 367 (838)
Q Consensus 289 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~-~~~~~~~~~li~~~~~~g~~~~A~ 367 (838)
.+.+.++.+.-.+..++-.+.- +.++..+.+|-..|.+.+.+.+|...|+.... .++..+|+-+..+|.+.|+.++|.
T Consensus 303 ~~l~~~d~~~l~k~~e~~l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~ 381 (400)
T COG3071 303 PRLRPGDPEPLIKAAEKWLKQH-PEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAE 381 (400)
T ss_pred hhcCCCCchHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHH
Confidence 4455666665555555555442 34457788888888899999999888887643 678888999999999999999998
Q ss_pred HHHHHhhhcCCCC
Q 046257 368 NFFCQMTREGVRP 380 (838)
Q Consensus 368 ~l~~~m~~~g~~p 380 (838)
+.+++-...-..|
T Consensus 382 ~~r~e~L~~~~~~ 394 (400)
T COG3071 382 QVRREALLLTRQP 394 (400)
T ss_pred HHHHHHHHHhcCC
Confidence 8888776543333
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.92 E-value=4.5e-05 Score=83.82 Aligned_cols=489 Identities=12% Similarity=0.046 Sum_probs=278.3
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCcccHHHHHHHh---ccCCChhhH-------------------HHH----HHHHHHhC
Q 046257 55 RDSLHQEALNLFLGIRRLGLPLFGSTLSSVLKTC---GCLFDHVFG-------------------RQV----HCECVKSG 108 (838)
Q Consensus 55 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~---~~~~~~~~a-------------------~~~----~~~~~~~g 108 (838)
..+..++++.-+.+....+.+.+..++..+...+ ...++.++. ... +.++....
T Consensus 239 ~~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~~Lllli~es~i~Re~~~d~ilslm~~~~k~r~~~ 318 (799)
T KOG4162|consen 239 KLSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEVILLLLIEESLIPRENIEDAILSLMLLLRKLRLKK 318 (799)
T ss_pred CCCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHhh
Confidence 3456677777777766666666666555554433 223334333 111 11112223
Q ss_pred CCCChhHHHHHHHHHHhCCChHHHHHHHccCCC---CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC-hhhHHH
Q 046257 109 FARDVNVSTSLVDLYMRTNNVEDGRRVFDDMNE---SNVVSWTSLLSGYARNKMNDRVLELFHRMQVEGIKPN-SFTFST 184 (838)
Q Consensus 109 ~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ 184 (838)
+..|+.+|..|.-+..++|+++.+.+.|+.... .....|+.+-..|...|....|+.+.+.-....-.|+ ...+..
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lm 398 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLM 398 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHH
Confidence 456788888888888889999999999987543 3445788888888888888888888877654332243 333333
Q ss_pred HHHHHh-cCCChHHHHHHHHHHHHhCC----CCchhHHHHHHHHhHcCCChhHHHHHHhcCCCCCcchHHHHHHHHHhCC
Q 046257 185 VLGVLA-DEGIVATAVQVHTMVIKNGG----EVVTSVCNALISMYLKSKMVRDARAVFDGMEDRDSITWNSMVAGYVTNE 259 (838)
Q Consensus 185 ll~~~~-~~g~~~~a~~l~~~~~~~g~----~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g 259 (838)
.-+.|. +.+.++++...-..++.... ......+-.+.-+|...- ....+|.- +..
T Consensus 399 asklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A--------------~~a~~~se------R~~ 458 (799)
T KOG4162|consen 399 ASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQA--------------RQANLKSE------RDA 458 (799)
T ss_pred HHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHh--------------hcCCChHH------HHH
Confidence 334443 44566666665555554210 011111222221221100 01111110 111
Q ss_pred ChHHHHHHHHHhhhCC-CCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHH
Q 046257 260 LHMEAFETFNNMGLAG-AELTRSTFVSVIKLCATTKELRLARQLHSQVLKNGIDFDHNIRTGLMVAYSKCGKMEDASKIF 338 (838)
Q Consensus 260 ~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f 338 (838)
...++++.+++-.+.+ -.|+...|.++- ++..++++.|.+...+.++.+-..+...+..|.-.+.-.+++.+|..+.
T Consensus 459 ~h~kslqale~av~~d~~dp~~if~lalq--~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vv 536 (799)
T KOG4162|consen 459 LHKKSLQALEEAVQFDPTDPLVIFYLALQ--YAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVV 536 (799)
T ss_pred HHHHHHHHHHHHHhcCCCCchHHHHHHHH--HHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 2356777777766543 455555555554 4456788889988888888877788888888888888888888888887
Q ss_pred Hhccc--CCCeeehHHHHHHHHHcCChHHHHHHHHHhhhc--CCCCCcccHHHHHhhCCCCChhHHHHHHHHhhccCCcc
Q 046257 339 SMMRE--MKDVVSWTAMISGHLQNGAIDLAVNFFCQMTRE--GVRPNGFTYSIILTAQPAVSPFQVHAHIIKTNYEKSFS 414 (838)
Q Consensus 339 ~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~ 414 (838)
+...+ ..|-+....-+..-..-++.++++.....+..- ...|
T Consensus 537 d~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~---------------------------------- 582 (799)
T KOG4162|consen 537 DAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYG---------------------------------- 582 (799)
T ss_pred HHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhh----------------------------------
Confidence 76542 112222222222233356777777776666541 0000
Q ss_pred hhhHHHHHHHHcCCHHHHHHHHHhcCC-----CCcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHh-hHHHHHHH
Q 046257 415 VGTALLNAYVKKGILDEAAKVFELIDE-----KDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEF-TFSSVINA 488 (838)
Q Consensus 415 ~~~~Li~~y~~~g~~~~A~~~f~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a 488 (838)
....|+-....+.+..+.- .+.+.-..-+.+.++ -+.+.+..-.. |...-+.|... ++...
T Consensus 583 --------~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a-~~~~~~~se~~-Lp~s~~~~~~~~~~~~~--- 649 (799)
T KOG4162|consen 583 --------VQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVA-SQLKSAGSELK-LPSSTVLPGPDSLWYLL--- 649 (799)
T ss_pred --------HhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHH-hhhhhcccccc-cCcccccCCCCchHHHH---
Confidence 0001111112222222210 111111111111111 00000000000 11111222211 11000
Q ss_pred hcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHH
Q 046257 489 CTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKA 565 (838)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A 565 (838)
...|....+.+.+.+..++|...+.+.. .-....|......+...|+.++|
T Consensus 650 --------------------------~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA 703 (799)
T KOG4162|consen 650 --------------------------QKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEA 703 (799)
T ss_pred --------------------------HHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHH
Confidence 2345556677888888888887766655 23455677777788889999999
Q ss_pred HHHHHHHHHcCCCCChh-HHHHHHHHHhccCCHHHHHH--HHHHHHhcCCccC-CCchHHHHHHHHHhcCCHHHHHHHHh
Q 046257 566 LEVFKEMRRQDLEFDGI-TFIGVITACTHAGLVDEGQQ--YFDIMVNEHHIYP-TMEHYSCMVDLYSRAGMLEKAMDIIN 641 (838)
Q Consensus 566 ~~l~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~--~~~~m~~~~~~~p-~~~~y~~lv~~l~r~G~~~~A~~~~~ 641 (838)
.+.|..... +.||++ +..++...+...|+..-+.. ++..+.+ +.| +.+.|-.+...+-+.|+.++|-+.|.
T Consensus 704 ~~af~~Al~--ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr---~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~ 778 (799)
T KOG4162|consen 704 KEAFLVALA--LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALR---LDPLNHEAWYYLGEVFKKLGDSKQAAECFQ 778 (799)
T ss_pred HHHHHHHHh--cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHh---hCCCCHHHHHHHHHHHHHccchHHHHHHHH
Confidence 999999988 889975 57788888899997776666 8888873 345 56788889999999999999999998
Q ss_pred hC
Q 046257 642 RM 643 (838)
Q Consensus 642 ~m 643 (838)
..
T Consensus 779 aa 780 (799)
T KOG4162|consen 779 AA 780 (799)
T ss_pred HH
Confidence 65
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.91 E-value=4.3e-06 Score=88.32 Aligned_cols=262 Identities=11% Similarity=0.100 Sum_probs=139.3
Q ss_pred CCcchhhHHHHHHHHcCCHHHHHHHHHhcCCCCc---chHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHH
Q 046257 411 KSFSVGTALLNAYVKKGILDEAAKVFELIDEKDI---VAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVIN 487 (838)
Q Consensus 411 ~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 487 (838)
.+..+.-...+-+..++++.+..++++.+-+.|. ..+..-|..+...|+..+-..+=.+|.+. .+-...+|-++--
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~ 320 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGC 320 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHH
Confidence 3444444555666677777777777777765443 34445566677777776666666666552 1222344444433
Q ss_pred HhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC----CCC-HHHHHHHHHHHHHcCCh
Q 046257 488 ACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQR----KRD-LVSWNSMICGYAQHGHT 562 (838)
Q Consensus 488 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~----~~~-~~~~~~li~~~~~~g~~ 562 (838)
-+-.. +...+|+..+......... =...|-++...|+-.|.-|.|...+.... .-. +..| +.--|.+.++.
T Consensus 321 YYl~i-~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LY--lgmey~~t~n~ 396 (611)
T KOG1173|consen 321 YYLMI-GKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLY--LGMEYMRTNNL 396 (611)
T ss_pred HHHHh-cCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHH--HHHHHHHhccH
Confidence 33333 4455555555444332211 12233444444555555555444332211 000 1111 12234444555
Q ss_pred HHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHHHhcC-CccC----CCchHHHHHHHHHhcCCHHHH
Q 046257 563 KKALEVFKEMRRQDLEFD-GITFIGVITACTHAGLVDEGQQYFDIMVNEH-HIYP----TMEHYSCMVDLYSRAGMLEKA 636 (838)
Q Consensus 563 ~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-~~~p----~~~~y~~lv~~l~r~G~~~~A 636 (838)
+-|.+.|.+... +.|+ +...+-+.-...+.+.+.+|..+|+.....- .+.+ ...+++.|..+|-+.+++++|
T Consensus 397 kLAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eA 474 (611)
T KOG1173|consen 397 KLAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEA 474 (611)
T ss_pred HHHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHH
Confidence 555555555544 4443 3333333333344555555555555443110 0000 111244455555555555555
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhh
Q 046257 637 MDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMND 697 (838)
Q Consensus 637 ~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~ 697 (838)
+..+++. +.+.|+++.+|..++-+|...|+.+.|...+.+...
T Consensus 475 I~~~q~a------------------L~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 475 IDYYQKA------------------LLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred HHHHHHH------------------HHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 5555554 889999999999999999999999999999987653
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.91 E-value=7.8e-06 Score=88.14 Aligned_cols=464 Identities=14% Similarity=0.133 Sum_probs=247.7
Q ss_pred hCCChHHHHHHHccCCC-CCcc-hHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHH
Q 046257 125 RTNNVEDGRRVFDDMNE-SNVV-SWTSLLSGYARNKMNDRVLELFHRMQVEGIKPNSFTFSTVLGVLADEGIVATAVQVH 202 (838)
Q Consensus 125 ~~g~~~~A~~~f~~m~~-~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~l~ 202 (838)
..|+++.|...++...- |+.. .|-.+.......|+.--|.+ +++..|++.+++.+|
T Consensus 456 d~~df~ra~afles~~~~~da~amw~~laelale~~nl~iaer----------------------cfaai~dvak~r~lh 513 (1636)
T KOG3616|consen 456 DDGDFDRATAFLESLEMGPDAEAMWIRLAELALEAGNLFIAER----------------------CFAAIGDVAKARFLH 513 (1636)
T ss_pred ccCchHHHHHHHHhhccCccHHHHHHHHHHHHHHhccchHHHH----------------------HHHHHHHHHHHHHHH
Confidence 34666666666655432 3332 35555554444554443333 334445666666665
Q ss_pred HHHH-------HhC-CCCchhHHHHHHHHhHcCCChhHHHHHHhcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHhhhC
Q 046257 203 TMVI-------KNG-GEVVTSVCNALISMYLKSKMVRDARAVFDGMEDRDSITWNSMVAGYVTNELHMEAFETFNNMGLA 274 (838)
Q Consensus 203 ~~~~-------~~g-~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~ 274 (838)
+... +.| -..+.+-..+++.+.. ..+.+|+.+|-+-.. -..-|..|....++++|+.+-+..
T Consensus 514 d~~eiadeas~~~ggdgt~fykvra~lail~--kkfk~ae~ifleqn~-----te~aigmy~~lhkwde~i~lae~~--- 583 (1636)
T KOG3616|consen 514 DILEIADEASIEIGGDGTDFYKVRAMLAILE--KKFKEAEMIFLEQNA-----TEEAIGMYQELHKWDEAIALAEAK--- 583 (1636)
T ss_pred HHHHHHHHHhHhhCCCCchHHHHHHHHHHHH--hhhhHHHHHHHhccc-----HHHHHHHHHHHHhHHHHHHHHHhc---
Confidence 5432 122 1223333344444443 357777777753221 123456666677788877764432
Q ss_pred CCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHHhccc-CCCeeehHHH
Q 046257 275 GAELTRSTFVSVIKLCATTKELRLARQLHSQVLKNGIDFDHNIRTGLMVAYSKCGKMEDASKIFSMMRE-MKDVVSWTAM 353 (838)
Q Consensus 275 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~-~~~~~~~~~l 353 (838)
|.+.-...-.+-++++...|+-+.|-++ ..+..-..+-|..|.+.|....|.+....-.+ ..|......+
T Consensus 584 ~~p~~eklk~sy~q~l~dt~qd~ka~el---------k~sdgd~laaiqlyika~~p~~a~~~a~n~~~l~~de~il~~i 654 (1636)
T KOG3616|consen 584 GHPALEKLKRSYLQALMDTGQDEKAAEL---------KESDGDGLAAIQLYIKAGKPAKAARAALNDEELLADEEILEHI 654 (1636)
T ss_pred CChHHHHHHHHHHHHHHhcCchhhhhhh---------ccccCccHHHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHH
Confidence 2111111223344555555555554432 12222234567888888888777665322110 2344444444
Q ss_pred HHHHHHcCChHHHHHHHHHhhhcCCCCCcccHHHHHhhCCCCChhHHHHHHHHhhccCCcc-hhhHHHHHHHHcCCHHHH
Q 046257 354 ISGHLQNGAIDLAVNFFCQMTREGVRPNGFTYSIILTAQPAVSPFQVHAHIIKTNYEKSFS-VGTALLNAYVKKGILDEA 432 (838)
Q Consensus 354 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~Li~~y~~~g~~~~A 432 (838)
..++.+..-+++|=.+|+++..- | -.+..+.+...+.-.-.+.+..++..++ +-.+-.+-+...|.++.|
T Consensus 655 a~alik~elydkagdlfeki~d~----d-----kale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daa 725 (1636)
T KOG3616|consen 655 AAALIKGELYDKAGDLFEKIHDF----D-----KALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAA 725 (1636)
T ss_pred HHHHHhhHHHHhhhhHHHHhhCH----H-----HHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHH
Confidence 44555555555555555554320 0 0011111111110000111111111111 111223334455666666
Q ss_pred HHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCC
Q 046257 433 AKVFELIDEKDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFHACSIKAKLN 512 (838)
Q Consensus 433 ~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~ 512 (838)
..-|-+... .-.-|.+-.....+.+|+.+++.++.... -.--|..+-+-|+.. ++++.+.+++...
T Consensus 726 inhfiea~~-----~~kaieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~-~dfe~ae~lf~e~------ 791 (1636)
T KOG3616|consen 726 INHFIEANC-----LIKAIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANK-GDFEIAEELFTEA------ 791 (1636)
T ss_pred HHHHHHhhh-----HHHHHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccc-hhHHHHHHHHHhc------
Confidence 655543311 11123444556778888888887776432 233455556667777 8888888776532
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 046257 513 NALCVSSALVTMYSKKGNIESASEVFKRQRKR--DLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGITFIGVITA 590 (838)
Q Consensus 513 ~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a 590 (838)
..++--|+||.+.|++++|.++-++...| ....|-+-..-+-.+|++.+|.++|-... .||. .|..
T Consensus 792 ---~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqm 859 (1636)
T KOG3616|consen 792 ---DLFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQM 859 (1636)
T ss_pred ---chhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHH
Confidence 24456789999999999999998887655 34567666777888999999988886542 3543 4566
Q ss_pred HhccCCHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCch
Q 046257 591 CTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSA 670 (838)
Q Consensus 591 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~ 670 (838)
|-+.|..+...++...-- | .--.++...+..-|-..|++.+|++-|-+..
T Consensus 860 ydk~~~~ddmirlv~k~h---~-d~l~dt~~~f~~e~e~~g~lkaae~~flea~-------------------------- 909 (1636)
T KOG3616|consen 860 YDKHGLDDDMIRLVEKHH---G-DHLHDTHKHFAKELEAEGDLKAAEEHFLEAG-------------------------- 909 (1636)
T ss_pred HHhhCcchHHHHHHHHhC---h-hhhhHHHHHHHHHHHhccChhHHHHHHHhhh--------------------------
Confidence 778888888777765321 1 1112344556677788888888888776552
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHH
Q 046257 671 IYVLLSNMYAATGHWQERARVRKL 694 (838)
Q Consensus 671 ~y~~l~~~y~~~g~~~~a~~~~~~ 694 (838)
-+-.-.|+|..+|.|++|.++-+.
T Consensus 910 d~kaavnmyk~s~lw~dayriakt 933 (1636)
T KOG3616|consen 910 DFKAAVNMYKASELWEDAYRIAKT 933 (1636)
T ss_pred hHHHHHHHhhhhhhHHHHHHHHhc
Confidence 133345667777777777666543
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.91 E-value=6.7e-06 Score=90.06 Aligned_cols=427 Identities=12% Similarity=0.078 Sum_probs=237.0
Q ss_pred CCCCchhHHHHHHHHhHcCCChhHHHHHHhcCCC---CCcchHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCChh-hHH
Q 046257 209 GGEVVTSVCNALISMYLKSKMVRDARAVFDGMED---RDSITWNSMVAGYVTNELHMEAFETFNNMGLAGAELTRS-TFV 284 (838)
Q Consensus 209 g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~ 284 (838)
.+..|..+|..|.-+..++|+++.+.+.|++... .....|+.+-..|...|.-..|+.+++.-....-.|+.. .+.
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 4567889999999999999999999999987654 345679999999999999999999988765443335444 344
Q ss_pred HHHHHHh-ccCcHHHHHHHHHHHHHh--CC--CCChhHHHHHHHHHHcC----CC-------hHHHHHHHHhccc--CCC
Q 046257 285 SVIKLCA-TTKELRLARQLHSQVLKN--GI--DFDHNIRTGLMVAYSKC----GK-------MEDASKIFSMMRE--MKD 346 (838)
Q Consensus 285 ~ll~~~~-~~~~~~~a~~~~~~~~~~--g~--~~~~~~~~~Li~~y~~~----g~-------~~~A~~~f~~~~~--~~~ 346 (838)
..-+.|. +.+..+++..+-..++.. +. ......+..+.-+|... .. ..++.+.+++..+ ..|
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~d 477 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTD 477 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 4444555 447777777766666652 11 11223333333333322 11 2233334444321 112
Q ss_pred eeehHHHHHHHHHcCChHHHHHHHHHhhhcCCCCCcccHHHHHhhCCCCChhHHHHHHHHhhccCCcchhhHHHHHHHHc
Q 046257 347 VVSWTAMISGHLQNGAIDLAVNFFCQMTREGVRPNGFTYSIILTAQPAVSPFQVHAHIIKTNYEKSFSVGTALLNAYVKK 426 (838)
Q Consensus 347 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~y~~~ 426 (838)
....--+---|+..++.+.|++..++..+-+-.-+.. .|--|.-.+...
T Consensus 478 p~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~-------------------------------~whLLALvlSa~ 526 (799)
T KOG4162|consen 478 PLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAK-------------------------------AWHLLALVLSAQ 526 (799)
T ss_pred chHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHH-------------------------------HHHHHHHHHhhh
Confidence 2111112223445556666666665555432222222 222333444455
Q ss_pred CCHHHHHHHHHhcCCC---CcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCChhhHHHHHHHH
Q 046257 427 GILDEAAKVFELIDEK---DIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFH 503 (838)
Q Consensus 427 g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~ 503 (838)
+++.+|+.+.+...+. |.+.-..-|..-..-++.++|+.....+..- --+...+...+. . +....-+.-.
T Consensus 527 kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~--we~~~~~q~~~~----~-g~~~~lk~~l 599 (799)
T KOG4162|consen 527 KRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLAL--WEAEYGVQQTLD----E-GKLLRLKAGL 599 (799)
T ss_pred hhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHH--HHhhhhHhhhhh----h-hhhhhhhccc
Confidence 6666666665543321 1111111112222245555555555544320 000000000000 0 0000000000
Q ss_pred HHHHHhcCCCchhHHHH---HHHHHHhcCCHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 046257 504 ACSIKAKLNNALCVSSA---LVTMYSKKGNIESASEVFKRQRKRD------LVSWNSMICGYAQHGHTKKALEVFKEMRR 574 (838)
Q Consensus 504 ~~~~~~~~~~~~~~~~~---li~~y~k~g~~~~A~~~f~~~~~~~------~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 574 (838)
... .......+.++.- ++..-.+.-..+.....+...+.|+ ...|......+.+.++.++|...+.+...
T Consensus 600 ~la-~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~ 678 (799)
T KOG4162|consen 600 HLA-LSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK 678 (799)
T ss_pred ccC-cccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh
Confidence 000 0011111222222 2221111111122222222223333 23466777788899999999988888776
Q ss_pred cCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCC-CchHHHHHHHHHhcCCHHHHHH--HHhhCCCCCCHH
Q 046257 575 QDLEFD-GITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPT-MEHYSCMVDLYSRAGMLEKAMD--IINRMPFAASAT 650 (838)
Q Consensus 575 ~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~G~~~~A~~--~~~~m~~~~~~~ 650 (838)
+.|- +..|.-....+...|..+||.+.|.... -+.|+ +....++..++.+.|+-.-|.. ++..+
T Consensus 679 --~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al---~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~da------- 746 (799)
T KOG4162|consen 679 --IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVAL---ALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDA------- 746 (799)
T ss_pred --cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH---hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHH-------
Confidence 4554 4455555566777899999999998776 45664 4567888899999997666666 77776
Q ss_pred HHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhh
Q 046257 651 VWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMND 697 (838)
Q Consensus 651 ~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~ 697 (838)
++++|.++.+|+.|+.++.+.|+.++|...|....+
T Consensus 747 -----------lr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 747 -----------LRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred -----------HhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 799999999999999999999999999999988754
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.88 E-value=9.5e-06 Score=80.54 Aligned_cols=94 Identities=19% Similarity=0.289 Sum_probs=50.4
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCC---CHHHHHHHH-HHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHH-HHHHhccC
Q 046257 521 LVTMYSKKGNIESASEVFKRQRKR---DLVSWNSMI-CGYAQHGHTKKALEVFKEMRRQDLEFDGITFIGV-ITACTHAG 595 (838)
Q Consensus 521 li~~y~k~g~~~~A~~~f~~~~~~---~~~~~~~li-~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~l-l~a~~~~g 595 (838)
+..+++..|++.+|+++|-.+..| |-.+|-+|+ .+|.+++.++-|-+++-++.. ..+..+..-+ .+-|-+.+
T Consensus 399 ~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~ 475 (557)
T KOG3785|consen 399 LAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKAN 475 (557)
T ss_pred HHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHH
Confidence 444556666667777766666533 445555543 456666666666555433321 2233333333 33566666
Q ss_pred CHHHHHHHHHHHHhcCCccCCCchH
Q 046257 596 LVDEGQQYFDIMVNEHHIYPTMEHY 620 (838)
Q Consensus 596 ~~~~a~~~~~~m~~~~~~~p~~~~y 620 (838)
.+=-|.+.|+.+. .+.|+++.|
T Consensus 476 eFyyaaKAFd~lE---~lDP~pEnW 497 (557)
T KOG3785|consen 476 EFYYAAKAFDELE---ILDPTPENW 497 (557)
T ss_pred HHHHHHHhhhHHH---ccCCCcccc
Confidence 6666666666554 235665554
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.2e-07 Score=97.02 Aligned_cols=178 Identities=15% Similarity=0.098 Sum_probs=126.4
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHH
Q 046257 515 LCVSSALVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITA 590 (838)
Q Consensus 515 ~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a 590 (838)
...+..+...|.+.|+.++|...|++.. +.+...|+.+...|...|++++|++.|++..+ +.|+ ..++..+..+
T Consensus 64 a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~--l~P~~~~a~~~lg~~ 141 (296)
T PRK11189 64 AQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAYLNRGIA 141 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 3456666777888888888888887665 44677888888888888999999988888888 6776 4567777777
Q ss_pred HhccCCHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHH--------
Q 046257 591 CTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDIINRMP--FAASATVWRTVLAACR-------- 660 (838)
Q Consensus 591 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~~m~--~~~~~~~w~~ll~~c~-------- 660 (838)
+...|++++|.+.|+...+ ..|+..........+...++.++|.+.+++.. ..|+...|. +....
T Consensus 142 l~~~g~~~eA~~~~~~al~---~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~~~--~~~~~lg~~~~~~ 216 (296)
T PRK11189 142 LYYGGRYELAQDDLLAFYQ---DDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKEQWGWN--IVEFYLGKISEET 216 (296)
T ss_pred HHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCccccHHH--HHHHHccCCCHHH
Confidence 8888889999888888773 34543322222233456678888888886532 123322232 11111
Q ss_pred -----------HhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhhCC
Q 046257 661 -----------LISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMNDRK 699 (838)
Q Consensus 661 -----------~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~~g 699 (838)
-.++.|+.+.+|..|+.+|...|++++|...+++..+..
T Consensus 217 ~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 217 LMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 124567778899999999999999999999999887643
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1e-05 Score=85.94 Aligned_cols=416 Identities=13% Similarity=0.113 Sum_probs=208.8
Q ss_pred HHHHhCCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCChhHHHH--HHHHH--HcC
Q 046257 253 AGYVTNELHMEAFETFNNMGLAGAELTRSTFVSVIKLCATTKELRLARQLHSQVLKNGIDFDHNIRTG--LMVAY--SKC 328 (838)
Q Consensus 253 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~--Li~~y--~~~ 328 (838)
.-+.++|++++|.....++...+ +-|...+..-+-+..+.+.++.|..+.+. .+. ..+++. +=.+| .+.
T Consensus 20 n~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk---~~~---~~~~~~~~fEKAYc~Yrl 92 (652)
T KOG2376|consen 20 NRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKK---NGA---LLVINSFFFEKAYCEYRL 92 (652)
T ss_pred HHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHh---cch---hhhcchhhHHHHHHHHHc
Confidence 34455566666666666665443 22333444444455566666666533321 111 111111 23333 366
Q ss_pred CChHHHHHHHHhcccCCCeeehHHHHHHHHHcCChHHHHHHHHHhhhcCCCCCc-ccHHHHHhhCCCCChhHHHHHHHHh
Q 046257 329 GKMEDASKIFSMMREMKDVVSWTAMISGHLQNGAIDLAVNFFCQMTREGVRPNG-FTYSIILTAQPAVSPFQVHAHIIKT 407 (838)
Q Consensus 329 g~~~~A~~~f~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~~~~~~~~~~~ 407 (838)
+..++|...++... ..+..+...-...+.+.|++++|+++|+.+.+.+..--. ..-..++.+-+... . ...+.
T Consensus 93 nk~Dealk~~~~~~-~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~---~--~~~q~ 166 (652)
T KOG2376|consen 93 NKLDEALKTLKGLD-RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQ---V--QLLQS 166 (652)
T ss_pred ccHHHHHHHHhccc-ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhh---H--HHHHh
Confidence 77777777777544 334334444445566777888888888877665433211 11111111111100 0 01111
Q ss_pred hccCCcchh---hHHHHHHHHcCCHHHHHHHHHhc--------CCCCcc----------hHHHHHHHHHhcCCchHHHHH
Q 046257 408 NYEKSFSVG---TALLNAYVKKGILDEAAKVFELI--------DEKDIV----------AWSAMLAGYAQIGDTEGAVKI 466 (838)
Q Consensus 408 ~~~~~~~~~---~~Li~~y~~~g~~~~A~~~f~~~--------~~~~~~----------~~~~li~~~~~~g~~~~A~~l 466 (838)
.......++ -.....+...|++.+|++++... .+.|.. .---|.-.+...|+.++|.++
T Consensus 167 v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~i 246 (652)
T KOG2376|consen 167 VPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSI 246 (652)
T ss_pred ccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 111111112 12344567889999999999876 221111 122244556678999999999
Q ss_pred HHHhhcCCCCCCHhhHHH---HHHHhcCChhhHHH------HHHHH-------HHHHHhcCCCchhHHHHHHHHHHhcCC
Q 046257 467 YRQLTSEGVKPNEFTFSS---VINACTAPSAAVEQ------GKQFH-------ACSIKAKLNNALCVSSALVTMYSKKGN 530 (838)
Q Consensus 467 ~~~m~~~g~~p~~~t~~~---ll~a~~~~~~~~~~------~~~~~-------~~~~~~~~~~~~~~~~~li~~y~k~g~ 530 (838)
+...+... .+|...... -|.+...- ..+-. -+..+ .......-......-++++.+|. +.
T Consensus 247 y~~~i~~~-~~D~~~~Av~~NNLva~~~d-~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t--nk 322 (652)
T KOG2376|consen 247 YVDIIKRN-PADEPSLAVAVNNLVALSKD-QNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT--NK 322 (652)
T ss_pred HHHHHHhc-CCCchHHHHHhcchhhhccc-cccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh--hh
Confidence 99988764 444432222 22222221 11111 00000 00111111122333456666665 34
Q ss_pred HHHHHHHHHhcCC--CCHHHHHHHHHHHHH-cCChHHHHHHHHHHHHcCCCCCh--hHHHHHHHHHhccCCHHHHHHHHH
Q 046257 531 IESASEVFKRQRK--RDLVSWNSMICGYAQ-HGHTKKALEVFKEMRRQDLEFDG--ITFIGVITACTHAGLVDEGQQYFD 605 (838)
Q Consensus 531 ~~~A~~~f~~~~~--~~~~~~~~li~~~~~-~g~~~~A~~l~~~m~~~g~~pd~--~t~~~ll~a~~~~g~~~~a~~~~~ 605 (838)
.+.+++.-...+. |....=+.+..++.. ...+.+|.+++.+.-+ -.|+. +.....+......|+++.|.+++.
T Consensus 323 ~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~--~~p~~s~~v~L~~aQl~is~gn~~~A~~il~ 400 (652)
T KOG2376|consen 323 MDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFAD--GHPEKSKVVLLLRAQLKISQGNPEVALEILS 400 (652)
T ss_pred HHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhc--cCCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 5666666666652 233222333333322 2246677777777766 34554 333344445567888888888877
Q ss_pred --------HHHhcCCccCCCchHHHHHHHHHhcCCHHHHHHHHhhC--------CCCCCHHHHHHHHHHHH---------
Q 046257 606 --------IMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDIINRM--------PFAASATVWRTVLAACR--------- 660 (838)
Q Consensus 606 --------~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~~m--------~~~~~~~~w~~ll~~c~--------- 660 (838)
... +.+ -.+.+...++.++.+.+.-+-|-.++.+. +.++...+-...+.+..
T Consensus 401 ~~~~~~~ss~~-~~~--~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea 477 (652)
T KOG2376|consen 401 LFLESWKSSIL-EAK--HLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEA 477 (652)
T ss_pred HHhhhhhhhhh-hhc--cChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHH
Confidence 443 222 23455667778888877765555555443 22221111111111111
Q ss_pred ------HhccCCCCchhHHHHHHHHHhcCCchHHHHH
Q 046257 661 ------LISLQPHDSAIYVLLSNMYAATGHWQERARV 691 (838)
Q Consensus 661 ------~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~ 691 (838)
+++.+|+|....+.+.-.|+.. +.+.|..+
T Consensus 478 ~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l 513 (652)
T KOG2376|consen 478 SSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESL 513 (652)
T ss_pred HHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHH
Confidence 6788999999999999888874 34444443
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.85 E-value=8e-05 Score=83.53 Aligned_cols=411 Identities=14% Similarity=0.183 Sum_probs=217.6
Q ss_pred HhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHcCCChhHHHHHHhcCCCCCcchHHHHHHHHHhCCChHHHHHHH
Q 046257 189 LADEGIVATAVQVHTMVIKNGGEVVTSVCNALISMYLKSKMVRDARAVFDGMEDRDSITWNSMVAGYVTNELHMEAFETF 268 (838)
Q Consensus 189 ~~~~g~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~l~ 268 (838)
+-+.+++..-...++..+..| ..|..++|+|...|...+.-.+ +.+.+ |..--+..+.-||...++.-|.-.|
T Consensus 848 vEkRNRLklLlp~LE~~i~eG-~~d~a~hnAlaKIyIDSNNnPE--~fLke----N~yYDs~vVGkYCEKRDP~lA~vaY 920 (1666)
T KOG0985|consen 848 VEKRNRLKLLLPWLESLIQEG-SQDPATHNALAKIYIDSNNNPE--RFLKE----NPYYDSKVVGKYCEKRDPHLACVAY 920 (1666)
T ss_pred HHhhhhHHHHHHHHHHHHhcc-CcchHHHhhhhheeecCCCChH--Hhccc----CCcchhhHHhhhhcccCCceEEEee
Confidence 334455555566667777777 5678888888888876654322 11111 1111112223333333222221111
Q ss_pred HHhhhC----CCCCChhhHHHHHHHHhccCcHH-----------HHHHHHHHHHHhCCC--CChhHHHHHHHHHHcCCCh
Q 046257 269 NNMGLA----GAELTRSTFVSVIKLCATTKELR-----------LARQLHSQVLKNGID--FDHNIRTGLMVAYSKCGKM 331 (838)
Q Consensus 269 ~~m~~~----g~~p~~~t~~~ll~~~~~~~~~~-----------~a~~~~~~~~~~g~~--~~~~~~~~Li~~y~~~g~~ 331 (838)
++-.-. ++--....|-...+......|.+ --+++.++++..+++ .|+.-.+.-+.++...+-.
T Consensus 921 erGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp 1000 (1666)
T KOG0985|consen 921 ERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLP 1000 (1666)
T ss_pred cccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCc
Confidence 110000 00001111222222222222221 224555666665543 2444555566667777777
Q ss_pred HHHHHHHHhcccCCCeee-----hHHHHHHHHHcCChHHHHHHHHHhhhcCCCCCcccHHHHHhhCCCCChhHHHHHH--
Q 046257 332 EDASKIFSMMREMKDVVS-----WTAMISGHLQNGAIDLAVNFFCQMTREGVRPNGFTYSIILTAQPAVSPFQVHAHI-- 404 (838)
Q Consensus 332 ~~A~~~f~~~~~~~~~~~-----~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~~-- 404 (838)
.+-.++++++.-.+++.+ -|.+|-.-.+ .+....+++.+++-.-. .|+..... + .. ++....
T Consensus 1001 ~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyD-a~~ia~ia--i-----~~--~LyEEAF~ 1069 (1666)
T KOG0985|consen 1001 NELIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYD-APDIAEIA--I-----EN--QLYEEAFA 1069 (1666)
T ss_pred HHHHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCC-chhHHHHH--h-----hh--hHHHHHHH
Confidence 777777777653333333 2222222222 22333444444432210 01110000 0 00 111111
Q ss_pred HHhhccCCcchhhHHHHHHHHcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHH
Q 046257 405 IKTNYEKSFSVGTALLNAYVKKGILDEAAKVFELIDEKDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSS 484 (838)
Q Consensus 405 ~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 484 (838)
+-..+..+....+.|++ .-+.+|.|.+.-+...+| ..|+.+..+-.+.|...+|++-|-+. -|+..|.-
T Consensus 1070 ifkkf~~n~~A~~VLie---~i~~ldRA~efAe~~n~p--~vWsqlakAQL~~~~v~dAieSyika------dDps~y~e 1138 (1666)
T KOG0985|consen 1070 IFKKFDMNVSAIQVLIE---NIGSLDRAYEFAERCNEP--AVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLE 1138 (1666)
T ss_pred HHHHhcccHHHHHHHHH---HhhhHHHHHHHHHhhCCh--HHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHH
Confidence 11112223333333333 346677777777766554 46899999999999999999887443 35677889
Q ss_pred HHHHhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---------------------
Q 046257 485 VINACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQRK--------------------- 543 (838)
Q Consensus 485 ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~--------------------- 543 (838)
+++++++. +.++.-..+..++.+..-+|. +-+.||-+|+|.+++.+-++.+..-..
T Consensus 1139 Vi~~a~~~-~~~edLv~yL~MaRkk~~E~~--id~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl 1215 (1666)
T KOG0985|consen 1139 VIDVASRT-GKYEDLVKYLLMARKKVREPY--IDSELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKL 1215 (1666)
T ss_pred HHHHHHhc-CcHHHHHHHHHHHHHhhcCcc--chHHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHH
Confidence 99999998 999998888888888766654 446788899999998887765432110
Q ss_pred --CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCCchHH
Q 046257 544 --RDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYS 621 (838)
Q Consensus 544 --~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~ 621 (838)
.++.-|.-|...+...|+++.|...-++. .+..||--+-.||...+.+.-| +|- -..+.-..+-..
T Consensus 1216 ~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlA-----QiC-GL~iivhadeLe 1283 (1666)
T KOG0985|consen 1216 LYSNVSNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFRLA-----QIC-GLNIIVHADELE 1283 (1666)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhhHH-----Hhc-CceEEEehHhHH
Confidence 12334555555566666666655544332 2345777777777765544333 222 112233444567
Q ss_pred HHHHHHHhcCCHHHHHHHHhhC
Q 046257 622 CMVDLYSRAGMLEKAMDIINRM 643 (838)
Q Consensus 622 ~lv~~l~r~G~~~~A~~~~~~m 643 (838)
-++..|...|.++|-..+++..
T Consensus 1284 eli~~Yq~rGyFeElIsl~Ea~ 1305 (1666)
T KOG0985|consen 1284 ELIEYYQDRGYFEELISLLEAG 1305 (1666)
T ss_pred HHHHHHHhcCcHHHHHHHHHhh
Confidence 7888899999999988888865
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.84 E-value=3.3e-07 Score=99.68 Aligned_cols=243 Identities=13% Similarity=0.171 Sum_probs=169.2
Q ss_pred chhhHHHHHHHHcCCHHHHHHHHHhcCCC----------Ccc-hHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhH
Q 046257 414 SVGTALLNAYVKKGILDEAAKVFELIDEK----------DIV-AWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTF 482 (838)
Q Consensus 414 ~~~~~Li~~y~~~g~~~~A~~~f~~~~~~----------~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 482 (838)
.+..-|..+|...|+++.|..+|....+. .+. .-+.+...|...+++.+|..+|+++..-
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i--------- 270 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTI--------- 270 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH---------
Confidence 34456889999999999999999865432 111 2334566777888899998888887541
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC----------CCCHH-HHHH
Q 046257 483 SSVINACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQR----------KRDLV-SWNS 551 (838)
Q Consensus 483 ~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~----------~~~~~-~~~~ 551 (838)
....+... .+.-..+++.|...|.+.|++++|...+++.. .+.+. -++.
T Consensus 271 --~e~~~G~~------------------h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~ 330 (508)
T KOG1840|consen 271 --REEVFGED------------------HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSE 330 (508)
T ss_pred --HHHhcCCC------------------CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHH
Confidence 11111111 01112344456667999999999888776543 22333 3666
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHc---CCCCCh----hHHHHHHHHHhccCCHHHHHHHHHHHHhcC---Cc--cCC-Cc
Q 046257 552 MICGYAQHGHTKKALEVFKEMRRQ---DLEFDG----ITFIGVITACTHAGLVDEGQQYFDIMVNEH---HI--YPT-ME 618 (838)
Q Consensus 552 li~~~~~~g~~~~A~~l~~~m~~~---g~~pd~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~--~p~-~~ 618 (838)
++..|...+++++|..+++...+. -+.+++ -++..+...+.+.|+++||.++|++++... +- .+. -.
T Consensus 331 ~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~ 410 (508)
T KOG1840|consen 331 LAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGK 410 (508)
T ss_pred HHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhH
Confidence 777889999999999999876542 133444 478899999999999999999999887542 11 122 23
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHh
Q 046257 619 HYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMN 696 (838)
Q Consensus 619 ~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~ 696 (838)
+++.|...|.+.++..+|.++|.+.. .|. -.| -.-.|+-..+|-.|+-+|.+.|++++|.++-....
T Consensus 411 ~l~~la~~~~~~k~~~~a~~l~~~~~------~i~---~~~--g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 411 PLNQLAEAYEELKKYEEAEQLFEEAK------DIM---KLC--GPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHH------HHH---HHh--CCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 57788899999999999999998752 222 111 11245566788999999999999999999887764
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.4e-07 Score=105.78 Aligned_cols=179 Identities=14% Similarity=0.040 Sum_probs=130.5
Q ss_pred hhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 046257 494 AAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFK 570 (838)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~ 570 (838)
+..+.+...+..+++.. +.+...+..+..++...|++++|...|++.. +.+...|..+...|...|++++|+..++
T Consensus 318 ~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~ 396 (553)
T PRK12370 318 NAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTIN 396 (553)
T ss_pred hHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 44666777777666654 3356667777788889999999999998865 3356778888999999999999999999
Q ss_pred HHHHcCCCCChh-HHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCC-CchHHHHHHHHHhcCCHHHHHHHHhhCCCCCC
Q 046257 571 EMRRQDLEFDGI-TFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPT-MEHYSCMVDLYSRAGMLEKAMDIINRMPFAAS 648 (838)
Q Consensus 571 ~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~ 648 (838)
+..+ +.|+.. .+..++.++...|++++|...++...+.. .|+ +..+..+..+|...|++++|.+.++++
T Consensus 397 ~Al~--l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~--~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~----- 467 (553)
T PRK12370 397 ECLK--LDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQH--LQDNPILLSMQVMFLSLKGKHELARKLTKEI----- 467 (553)
T ss_pred HHHh--cCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhc--cccCHHHHHHHHHHHHhCCCHHHHHHHHHHh-----
Confidence 9998 667643 33344445666889999999998876332 343 445677788889999999999999876
Q ss_pred HHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhh
Q 046257 649 ATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMND 697 (838)
Q Consensus 649 ~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~ 697 (838)
....|.+......|+..|...| ++|...++.+.+
T Consensus 468 -------------~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 468 -------------STQEITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred -------------hhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 3345555556666666777766 467666666543
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.84 E-value=9.1e-05 Score=81.39 Aligned_cols=421 Identities=12% Similarity=0.100 Sum_probs=216.2
Q ss_pred cCCCCCcccHHHHH--HHHHccCChHHHHHHHHHHHHcCCCCCcccHHHHHHHhccCCChhhHHHHHHHHHHh-------
Q 046257 37 RSPQRNFVEYNRLL--FEYCRDSLHQEALNLFLGIRRLGLPLFGSTLSSVLKTCGCLFDHVFGRQVHCECVKS------- 107 (838)
Q Consensus 37 ~~~~~~~~~~~~li--~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------- 107 (838)
.....|..+-.+++ +-|.--|+.+.|.+..+-+. +...|..+.+.|.+.++++-|+-.+..|...
T Consensus 720 gle~Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR 793 (1416)
T KOG3617|consen 720 GLENCDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALR 793 (1416)
T ss_pred CccccCHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHH
Confidence 33334444555555 24556677777766655543 3345777777777666666665555444221
Q ss_pred --CCCCChhHHHHHHHHHHhCCChHHHHHHHccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHH
Q 046257 108 --GFARDVNVSTSLVDLYMRTNNVEDGRRVFDDMNESNVVSWTSLLSGYARNKMNDRVLELFHRMQVEGIKPNSFTFSTV 185 (838)
Q Consensus 108 --g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 185 (838)
.-.++ ..-....-.-...|.+++|..++.+-.+ |..|=+.|-..|.|++|+++-+.-.+-.++ .||-.-
T Consensus 794 ~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR-----~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr---~Tyy~y 864 (1416)
T KOG3617|consen 794 RAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKR-----YDLLNKLYQSQGMWSEAFEIAETKDRIHLR---NTYYNY 864 (1416)
T ss_pred HHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHH-----HHHHHHHHHhcccHHHHHHHHhhccceehh---hhHHHH
Confidence 01111 1111222223455777777777765433 444555566677777777766543222222 334344
Q ss_pred HHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHcCCChhHHHHHHhcCCCCCcchHHHHHHHHHhCCChHHHH
Q 046257 186 LGVLADEGIVATAVQVHTMVIKNGGEVVTSVCNALISMYLKSKMVRDARAVFDGMEDRDSITWNSMVAGYVTNELHMEAF 265 (838)
Q Consensus 186 l~~~~~~g~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~ 265 (838)
..-+...++.+.|.+.|+..-. +-..+.. ++. .++...+...+.+.++....| -..-+-..|..+.|+
T Consensus 865 A~~Lear~Di~~AleyyEK~~~----hafev~r-mL~-----e~p~~~e~Yv~~~~d~~L~~W--WgqYlES~GemdaAl 932 (1416)
T KOG3617|consen 865 AKYLEARRDIEAALEYYEKAGV----HAFEVFR-MLK-----EYPKQIEQYVRRKRDESLYSW--WGQYLESVGEMDAAL 932 (1416)
T ss_pred HHHHHhhccHHHHHHHHHhcCC----hHHHHHH-HHH-----hChHHHHHHHHhccchHHHHH--HHHHHhcccchHHHH
Confidence 4444445566666666553211 1111111 111 123333444455554433333 223334567778888
Q ss_pred HHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHHhcccCC
Q 046257 266 ETFNNMGLAGAELTRSTFVSVIKLCATTKELRLARQLHSQVLKNGIDFDHNIRTGLMVAYSKCGKMEDASKIFSMMREMK 345 (838)
Q Consensus 266 ~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~ 345 (838)
.+|...+. |-++++..|-.|+.++|-++-++ .-|....-.|.++|-..|++.+|..+|.+..
T Consensus 933 ~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq--- 994 (1416)
T KOG3617|consen 933 SFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTRAQ--- 994 (1416)
T ss_pred HHHHHhhh---------hhhheeeEeeccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHHHH---
Confidence 77776653 45566666777888887777654 2355666677788888888888888887765
Q ss_pred CeeehHHHHHHHHHcCChHHHHHHHHHhhhcCCCCCcccHHHHHhhCCCCChh-HHHHHHHHhhccCCcchhhHHHHHHH
Q 046257 346 DVVSWTAMISGHLQNGAIDLAVNFFCQMTREGVRPNGFTYSIILTAQPAVSPF-QVHAHIIKTNYEKSFSVGTALLNAYV 424 (838)
Q Consensus 346 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~Li~~y~ 424 (838)
++...|..|-.++.-++-.. +.-|.. ..++ ....+....|..- .--+-.|-
T Consensus 995 ---afsnAIRlcKEnd~~d~L~n-lal~s~-------------------~~d~v~aArYyEe~g~~~-----~~AVmLYH 1046 (1416)
T KOG3617|consen 995 ---AFSNAIRLCKENDMKDRLAN-LALMSG-------------------GSDLVSAARYYEELGGYA-----HKAVMLYH 1046 (1416)
T ss_pred ---HHHHHHHHHHhcCHHHHHHH-HHhhcC-------------------chhHHHHHHHHHHcchhh-----hHHHHHHH
Confidence 33344444333332222111 111100 0000 1111111111100 12344577
Q ss_pred HcCCHHHHHHHHHhcCC--------------CCcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhc
Q 046257 425 KKGILDEAAKVFELIDE--------------KDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACT 490 (838)
Q Consensus 425 ~~g~~~~A~~~f~~~~~--------------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 490 (838)
|.|.+.+|+++--+-.+ .|....+.-..-|+.+.++++|..++...++ |...+.-|.
T Consensus 1047 kAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~---------~~~AlqlC~ 1117 (1416)
T KOG3617|consen 1047 KAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLARE---------FSGALQLCK 1117 (1416)
T ss_pred hhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---------HHHHHHHHh
Confidence 88888777765322221 2444555556667778888888888766543 445555555
Q ss_pred CChhhHHHHHHHHHHHHH--hcCCC---chhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 046257 491 APSAAVEQGKQFHACSIK--AKLNN---ALCVSSALVTMYSKKGNIESASEVFKRQ 541 (838)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~--~~~~~---~~~~~~~li~~y~k~g~~~~A~~~f~~~ 541 (838)
.. .+.-..++.+.|.- .+..+ -..+...+.+.+.++|.+..|-+-|-+.
T Consensus 1118 ~~--nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1118 NR--NVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred cC--CCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhh
Confidence 43 22333333333332 12111 2345556777788888888887777543
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.8e-07 Score=86.51 Aligned_cols=161 Identities=14% Similarity=0.136 Sum_probs=138.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh-hHHHHHHHHHhccC
Q 046257 520 ALVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDG-ITFIGVITACTHAG 595 (838)
Q Consensus 520 ~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g 595 (838)
.|.-.|...|+...|.+-+++.. +.+..+|..+...|-+.|+.+.|.+-|++.+. +.|+. ...|....-+|..|
T Consensus 40 qLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls--l~p~~GdVLNNYG~FLC~qg 117 (250)
T COG3063 40 QLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALS--LAPNNGDVLNNYGAFLCAQG 117 (250)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh--cCCCccchhhhhhHHHHhCC
Confidence 35557999999999999999887 33567899999999999999999999999999 67864 56777777788899
Q ss_pred CHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHH
Q 046257 596 LVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLL 675 (838)
Q Consensus 596 ~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l 675 (838)
.+++|.+.|+.....-...--..+|..++-.-.++|+++.|.+.+++. ++++|+.+.+.-.+
T Consensus 118 ~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~ra------------------L~~dp~~~~~~l~~ 179 (250)
T COG3063 118 RPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRA------------------LELDPQFPPALLEL 179 (250)
T ss_pred ChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHH------------------HHhCcCCChHHHHH
Confidence 999999999999854222223467888888889999999999999987 89999999999999
Q ss_pred HHHHHhcCCchHHHHHHHHHhhCCC
Q 046257 676 SNMYAATGHWQERARVRKLMNDRKV 700 (838)
Q Consensus 676 ~~~y~~~g~~~~a~~~~~~m~~~g~ 700 (838)
++.....|++-+|...++....++.
T Consensus 180 a~~~~~~~~y~~Ar~~~~~~~~~~~ 204 (250)
T COG3063 180 ARLHYKAGDYAPARLYLERYQQRGG 204 (250)
T ss_pred HHHHHhcccchHHHHHHHHHHhccc
Confidence 9999999999999999998887664
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.81 E-value=0.0001 Score=80.92 Aligned_cols=370 Identities=13% Similarity=0.091 Sum_probs=218.3
Q ss_pred CcccHHHHHHHHHccCChHHHHHHHHHHHHc--------CCCCCcccHHHHHHHhccCCChhhHHHHHHHHHHhCCCCCh
Q 046257 42 NFVEYNRLLFEYCRDSLHQEALNLFLGIRRL--------GLPLFGSTLSSVLKTCGCLFDHVFGRQVHCECVKSGFARDV 113 (838)
Q Consensus 42 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--------g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 113 (838)
+-..|..|.+.|.+..+.+-|.-.+-.|... ..+-+..+-.-+.......|.+++|+.++++..+.
T Consensus 756 S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR~------ 829 (1416)
T KOG3617|consen 756 SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELGMLEEALILYRQCKRY------ 829 (1416)
T ss_pred hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHhhHHHHHHHHHHHHHH------
Confidence 3457999999999988888777666665432 11222233333333446789999999999887654
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHccCCCCC-cchHHHHHHHHHhCCCchHHHHHHHHH----------HHCCC-------
Q 046257 114 NVSTSLVDLYMRTNNVEDGRRVFDDMNESN-VVSWTSLLSGYARNKMNDRVLELFHRM----------QVEGI------- 175 (838)
Q Consensus 114 ~~~~~li~~y~~~g~~~~A~~~f~~m~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m----------~~~g~------- 175 (838)
..|-..|...|.+++|.++-+.-.+-. ..||..-..-+-..++.+.|++.|+.- ....+
T Consensus 830 ---DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv 906 (1416)
T KOG3617|consen 830 ---DLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYV 906 (1416)
T ss_pred ---HHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHH
Confidence 345577889999999999887644311 124555555556667788888777652 22111
Q ss_pred --CCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHcCCChhHHHHHHhcCCCCCcchHHHHHH
Q 046257 176 --KPNSFTFSTVLGVLADEGIVATAVQVHTMVIKNGGEVVTSVCNALISMYLKSKMVRDARAVFDGMEDRDSITWNSMVA 253 (838)
Q Consensus 176 --~p~~~t~~~ll~~~~~~g~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~n~li~ 253 (838)
.-|..-|.--..-+-..|+.+.|..+|..+.. |-+++...+-.|+.++|.++-++-. |....-.+..
T Consensus 907 ~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~esg--d~AAcYhlaR 975 (1416)
T KOG3617|consen 907 RRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEESG--DKAACYHLAR 975 (1416)
T ss_pred HhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhcc--cHHHHHHHHH
Confidence 11233333333344466777777777765532 4567777777888998888876543 5556666788
Q ss_pred HHHhCCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccC---------------cHHHHHHHHHHHHHhCCCCChhHH
Q 046257 254 GYVTNELHMEAFETFNNMGLAGAELTRSTFVSVIKLCATTK---------------ELRLARQLHSQVLKNGIDFDHNIR 318 (838)
Q Consensus 254 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~---------------~~~~a~~~~~~~~~~g~~~~~~~~ 318 (838)
.|-..|++.+|+.+|.+.+ +|...|+.|-..+ +.-.|-..|++. |. -.
T Consensus 976 ~YEn~g~v~~Av~FfTrAq---------afsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~---g~-----~~ 1038 (1416)
T KOG3617|consen 976 MYENDGDVVKAVKFFTRAQ---------AFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEEL---GG-----YA 1038 (1416)
T ss_pred HhhhhHHHHHHHHHHHHHH---------HHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHc---ch-----hh
Confidence 8999999999999998765 4555555554332 222233333321 21 11
Q ss_pred HHHHHHHHcCCChHHHHHHHHhcc---------c----CCCeeehHHHHHHHHHcCChHHHHHHHHHhhhcCCCCCcccH
Q 046257 319 TGLMVAYSKCGKMEDASKIFSMMR---------E----MKDVVSWTAMISGHLQNGAIDLAVNFFCQMTREGVRPNGFTY 385 (838)
Q Consensus 319 ~~Li~~y~~~g~~~~A~~~f~~~~---------~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~ 385 (838)
..-+..|.|.|.+.+|.++--.-. + ..|+...+--...|+.+.++++|..++-..++ |
T Consensus 1039 ~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~---------~ 1109 (1416)
T KOG3617|consen 1039 HKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLARE---------F 1109 (1416)
T ss_pred hHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---------H
Confidence 233556888888888876532211 1 23444455556677788888988888766554 3
Q ss_pred HHHHhhCCCCChh--HHHHHHHHhhc--cC----CcchhhHHHHHHHHcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhc
Q 046257 386 SIILTAQPAVSPF--QVHAHIIKTNY--EK----SFSVGTALLNAYVKKGILDEAAKVFELIDEKDIVAWSAMLAGYAQI 457 (838)
Q Consensus 386 ~~ll~a~~~~~~~--~~~~~~~~~~~--~~----~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~ 457 (838)
...+..|...+-. +-...+....- .+ ...+...+.+.+.+.|.+..|-+-|-+.-.+ -.-+.++.+.
T Consensus 1110 ~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdK-----l~AMraLLKS 1184 (1416)
T KOG3617|consen 1110 SGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGDK-----LSAMRALLKS 1184 (1416)
T ss_pred HHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhH-----HHHHHHHHhc
Confidence 3344444333322 11111111000 11 1223445677777888888887777655432 1224455555
Q ss_pred CCchH
Q 046257 458 GDTEG 462 (838)
Q Consensus 458 g~~~~ 462 (838)
|+.++
T Consensus 1185 Gdt~K 1189 (1416)
T KOG3617|consen 1185 GDTQK 1189 (1416)
T ss_pred CCcce
Confidence 55443
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.79 E-value=4.4e-05 Score=77.65 Aligned_cols=280 Identities=13% Similarity=0.069 Sum_probs=184.4
Q ss_pred CcchhhHHHHHHHHcCCHHHHHHHHHhcCCCCcchHHHH---HHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHH
Q 046257 412 SFSVGTALLNAYVKKGILDEAAKVFELIDEKDIVAWSAM---LAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINA 488 (838)
Q Consensus 412 ~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 488 (838)
++....++.+.|...|+.++|...|++...-|+.+...| .-.+.+.|+.++...+...+....-.--...|.+. ..
T Consensus 231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~-~~ 309 (564)
T KOG1174|consen 231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHA-QL 309 (564)
T ss_pred cHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhh-hh
Confidence 344446788888889999999999988766555443332 23345678888777777766542100011111111 11
Q ss_pred hcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHH
Q 046257 489 CTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKA 565 (838)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A 565 (838)
.-.. .+.+.+..+-+..++.... ++..+-.-...+...|+.++|.-.|.... +-+..+|..|+..|...|.+.+|
T Consensus 310 l~~~-K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA 387 (564)
T KOG1174|consen 310 LYDE-KKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEA 387 (564)
T ss_pred hhhh-hhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHH
Confidence 1111 4555555555555543321 22222222345567899999998887655 45889999999999999999999
Q ss_pred HHHHHHHHHcCCCCChhHHHHHH-HHHhc-cCCHHHHHHHHHHHHhcCCccCCC-chHHHHHHHHHhcCCHHHHHHHHhh
Q 046257 566 LEVFKEMRRQDLEFDGITFIGVI-TACTH-AGLVDEGQQYFDIMVNEHHIYPTM-EHYSCMVDLYSRAGMLEKAMDIINR 642 (838)
Q Consensus 566 ~~l~~~m~~~g~~pd~~t~~~ll-~a~~~-~g~~~~a~~~~~~m~~~~~~~p~~-~~y~~lv~~l~r~G~~~~A~~~~~~ 642 (838)
.-+-++.... +..+..+...+. ..|.- ...-++|.+++++-. .+.|+- .....+..++.+.|+.+++..++++
T Consensus 388 ~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~ 463 (564)
T KOG1174|consen 388 NALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEK 463 (564)
T ss_pred HHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHHH
Confidence 9888876662 233444544442 33332 334578888888655 456653 3456677899999999999999997
Q ss_pred CCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhhCCCccCCceeEEEECCEEEEEeeCC
Q 046257 643 MPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMNDRKVKKEAGYSWIEVKNKTYSFLAGD 722 (838)
Q Consensus 643 m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~~~~~s~i~~~~~~~~f~~~~ 722 (838)
. +...| |...++.|++++.....+.+|...|.....
T Consensus 464 ~------------------L~~~~-D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr------------------------- 499 (564)
T KOG1174|consen 464 H------------------LIIFP-DVNLHNHLGDIMRAQNEPQKAMEYYYKALR------------------------- 499 (564)
T ss_pred H------------------Hhhcc-ccHHHHHHHHHHHHhhhHHHHHHHHHHHHh-------------------------
Confidence 6 44455 677889999999999999999999988764
Q ss_pred CCCCChHHHHHHHHHHHHHHH
Q 046257 723 ISHPQSNQIYSKLEELSTRLK 743 (838)
Q Consensus 723 ~~~~~~~~i~~~l~~l~~~~~ 743 (838)
..|+.+.-.+-|+.|.++|+
T Consensus 500 -~dP~~~~sl~Gl~~lEK~~~ 519 (564)
T KOG1174|consen 500 -QDPKSKRTLRGLRLLEKSDD 519 (564)
T ss_pred -cCccchHHHHHHHHHHhccC
Confidence 35677777777777777766
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.1e-06 Score=98.06 Aligned_cols=226 Identities=12% Similarity=0.020 Sum_probs=132.0
Q ss_pred CcchHHHHHHHHHh-----CCCchHHHHHHHHHHHCCCCCCh-hhHHHHHHHHh---------cCCChHHHHHHHHHHHH
Q 046257 143 NVVSWTSLLSGYAR-----NKMNDRVLELFHRMQVEGIKPNS-FTFSTVLGVLA---------DEGIVATAVQVHTMVIK 207 (838)
Q Consensus 143 ~~~~~~~li~~~~~-----~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~~~~---------~~g~~~~a~~l~~~~~~ 207 (838)
+...|...+++-.. .+..++|+.+|++..+. .|+. ..|..+..++. ..++.++|...++.+++
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 44456666665322 12356778888877664 3433 33433333222 22346777777777777
Q ss_pred hCCCCchhHHHHHHHHhHcCCChhHHHHHHhcCCC--C-CcchHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCChh-hH
Q 046257 208 NGGEVVTSVCNALISMYLKSKMVRDARAVFDGMED--R-DSITWNSMVAGYVTNELHMEAFETFNNMGLAGAELTRS-TF 283 (838)
Q Consensus 208 ~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~-~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~ 283 (838)
.. +.+...+..+...+...|++++|...|++..+ | +...|..+...+...|++++|+..+++..+. .|+.. .+
T Consensus 333 ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~ 409 (553)
T PRK12370 333 LD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAG 409 (553)
T ss_pred cC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhH
Confidence 65 44566677777777777777777777776543 2 3445666777777777777777777777654 33321 22
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHHhccc-CC-CeeehHHHHHHHHHcC
Q 046257 284 VSVIKLCATTKELRLARQLHSQVLKNGIDFDHNIRTGLMVAYSKCGKMEDASKIFSMMRE-MK-DVVSWTAMISGHLQNG 361 (838)
Q Consensus 284 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~-~~-~~~~~~~li~~~~~~g 361 (838)
..++..+...|++++|...+..+++...+.+...+..+...|...|+.++|...+.++.. .+ +...++.+...|.+.|
T Consensus 410 ~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 489 (553)
T PRK12370 410 ITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS 489 (553)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH
Confidence 223334445667777777777766554333444556666667777777777777766542 11 2223444445555555
Q ss_pred ChHHHHHHHHHhhh
Q 046257 362 AIDLAVNFFCQMTR 375 (838)
Q Consensus 362 ~~~~A~~l~~~m~~ 375 (838)
++|...++++.+
T Consensus 490 --~~a~~~l~~ll~ 501 (553)
T PRK12370 490 --ERALPTIREFLE 501 (553)
T ss_pred --HHHHHHHHHHHH
Confidence 355555555544
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.75 E-value=0.00021 Score=77.24 Aligned_cols=446 Identities=14% Similarity=0.135 Sum_probs=249.8
Q ss_pred CCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHcCCChhHHHHHHhcCCC---CCcchHHHHHHHHHhCCChHHHHHHH
Q 046257 192 EGIVATAVQVHTMVIKNGGEVVTSVCNALISMYLKSKMVRDARAVFDGMED---RDSITWNSMVAGYVTNELHMEAFETF 268 (838)
Q Consensus 192 ~g~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~n~li~~~~~~g~~~~A~~l~ 268 (838)
.+++..+.++.+.+++. ++....+.....-.+...|+-++|......-.. ++.+.|..+.-.+-...++++|++.|
T Consensus 20 ~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy 98 (700)
T KOG1156|consen 20 TKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCY 98 (700)
T ss_pred HHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHH
Confidence 35555666666666552 222222222222223345777777776654433 46678998888888888899999999
Q ss_pred HHhhhCCCCCCh-hhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHHhccc----
Q 046257 269 NNMGLAGAELTR-STFVSVIKLCATTKELRLARQLHSQVLKNGIDFDHNIRTGLMVAYSKCGKMEDASKIFSMMRE---- 343 (838)
Q Consensus 269 ~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---- 343 (838)
+..... .||. ..+.-+--.=++.++++.......+..+.. +.....|..++.++.-.|+...|..+.+....
T Consensus 99 ~nAl~~--~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~ 175 (700)
T KOG1156|consen 99 RNALKI--EKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNT 175 (700)
T ss_pred HHHHhc--CCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 887654 4443 333333333345566666555555554432 33455666777777777777777777666543
Q ss_pred CCCeeehHHHH------HHHHHcCChHHHHHHHHHhhhcCCCCCcccHHHHHhhCCCCChhHHHHHHHHhhccCCcchhh
Q 046257 344 MKDVVSWTAMI------SGHLQNGAIDLAVNFFCQMTREGVRPNGFTYSIILTAQPAVSPFQVHAHIIKTNYEKSFSVGT 417 (838)
Q Consensus 344 ~~~~~~~~~li------~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (838)
.++...+.... .-..++|..++|++-+..-... ..|...+ .-
T Consensus 176 ~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~------------------------------~e 223 (700)
T KOG1156|consen 176 SPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAF------------------------------EE 223 (700)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHH------------------------------hh
Confidence 13333332222 2334556666666665544321 1111111 12
Q ss_pred HHHHHHHHcCCHHHHHHHHHhcCCC--CcchHHHH-HHHHHhcCCchHHH-HHHHHhhcC---CCCCCHhhHHHHHHHhc
Q 046257 418 ALLNAYVKKGILDEAAKVFELIDEK--DIVAWSAM-LAGYAQIGDTEGAV-KIYRQLTSE---GVKPNEFTFSSVINACT 490 (838)
Q Consensus 418 ~Li~~y~~~g~~~~A~~~f~~~~~~--~~~~~~~l-i~~~~~~g~~~~A~-~l~~~m~~~---g~~p~~~t~~~ll~a~~ 490 (838)
.-.+.+.+.+++++|..++..+..+ |-+-|... ..++.+-.+.-+++ .+|....+. ...|-....+.+ .
T Consensus 224 ~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl-~--- 299 (700)
T KOG1156|consen 224 TKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVL-N--- 299 (700)
T ss_pred hHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHh-C---
Confidence 4456688899999999999988764 44444443 34443444444555 566655442 122222222211 1
Q ss_pred CChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHH---H-HHHHHHhcC--------------CCCHHHHHH-
Q 046257 491 APSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIE---S-ASEVFKRQR--------------KRDLVSWNS- 551 (838)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~---~-A~~~f~~~~--------------~~~~~~~~~- 551 (838)
.. .-.+....+....++.|+++ ++..+...|-.-...+ + +..+...+. .|....|+.
T Consensus 300 ~e-el~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y 375 (700)
T KOG1156|consen 300 GE-ELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLY 375 (700)
T ss_pred cc-hhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHH
Confidence 11 33333444455555666544 3444444443322111 1 222222221 344455655
Q ss_pred -HHHHHHHcCChHHHHHHHHHHHHcCCCCChh-HHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHh
Q 046257 552 -MICGYAQHGHTKKALEVFKEMRRQDLEFDGI-TFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSR 629 (838)
Q Consensus 552 -li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r 629 (838)
++..|-..|+++.|....+...+ -.|+.+ -|..=...+.|+|++++|..+++...+. -.||...-+--+.-..|
T Consensus 376 ~laqh~D~~g~~~~A~~yId~AId--HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~el--D~aDR~INsKcAKYmLr 451 (700)
T KOG1156|consen 376 FLAQHYDKLGDYEVALEYIDLAID--HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQEL--DTADRAINSKCAKYMLR 451 (700)
T ss_pred HHHHHHHHcccHHHHHHHHHHHhc--cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc--cchhHHHHHHHHHHHHH
Confidence 67788899999999999999988 577753 4656668899999999999999988632 13555544455677889
Q ss_pred cCCHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHH
Q 046257 630 AGMLEKAMDIINRMPFAA-SATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLM 695 (838)
Q Consensus 630 ~G~~~~A~~~~~~m~~~~-~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m 695 (838)
+.+.++|.++.....-+. +++..-+.+. |..+.++ + +..|.+.|+|.+|.+=+..+
T Consensus 452 An~i~eA~~~~skFTr~~~~~~~~L~~mq-cmWf~~E--~-------g~ay~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 452 ANEIEEAEEVLSKFTREGFGAVNNLAEMQ-CMWFQLE--D-------GEAYLRQNKLGLALKKFHEI 508 (700)
T ss_pred ccccHHHHHHHHHhhhcccchhhhHHHhh-hHHHhHh--h-------hHHHHHHHHHHHHHHHHhhH
Confidence 999999999987664222 2221111111 2222222 1 34566667776666544443
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.71 E-value=0.00015 Score=77.44 Aligned_cols=209 Identities=11% Similarity=0.109 Sum_probs=109.5
Q ss_pred HHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHH--HHHHhH--cCC
Q 046257 153 GYARNKMNDRVLELFHRMQVEGIKPNSFTFSTVLGVLADEGIVATAVQVHTMVIKNGGEVVTSVCNA--LISMYL--KSK 228 (838)
Q Consensus 153 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~l~~~~~~~g~~~~~~~~~~--li~~y~--~~g 228 (838)
-+..+|++++|......+...+ +-|...+..=+-++.+.+.+++|..+.+. .+. ..+++. +=.+|+ +.+
T Consensus 21 ~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk---~~~---~~~~~~~~fEKAYc~Yrln 93 (652)
T KOG2376|consen 21 RHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKK---NGA---LLVINSFFFEKAYCEYRLN 93 (652)
T ss_pred HhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHh---cch---hhhcchhhHHHHHHHHHcc
Confidence 3445556666666666665543 23344455555555566666666533221 110 011111 233343 567
Q ss_pred ChhHHHHHHhcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCChh-hHHHHHHHHhccCcHHHHHHHHHHHH
Q 046257 229 MVRDARAVFDGMEDRDSITWNSMVAGYVTNELHMEAFETFNNMGLAGAELTRS-TFVSVIKLCATTKELRLARQLHSQVL 307 (838)
Q Consensus 229 ~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~ 307 (838)
..++|...++.....+..+-..-...+.+.|++++|+++|+.+.+.+..--.. --..++.+-. ..-.+..
T Consensus 94 k~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a---------~l~~~~~ 164 (652)
T KOG2376|consen 94 KLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA---------ALQVQLL 164 (652)
T ss_pred cHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH---------hhhHHHH
Confidence 88888888875555555455555667778888888888888887654322111 1111221111 1111111
Q ss_pred HhCCCCChhHHHH---HHHHHHcCCChHHHHHHHHhccc-------CCCee-----e-----hHHHHHHHHHcCChHHHH
Q 046257 308 KNGIDFDHNIRTG---LMVAYSKCGKMEDASKIFSMMRE-------MKDVV-----S-----WTAMISGHLQNGAIDLAV 367 (838)
Q Consensus 308 ~~g~~~~~~~~~~---Li~~y~~~g~~~~A~~~f~~~~~-------~~~~~-----~-----~~~li~~~~~~g~~~~A~ 367 (838)
+.-......+|.. ....+...|++.+|+++++.... ..|.. . ---|.-.+...|+.++|.
T Consensus 165 q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~ 244 (652)
T KOG2376|consen 165 QSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEAS 244 (652)
T ss_pred HhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 1111111223332 34456677888888888877611 11111 1 112333456789999999
Q ss_pred HHHHHhhhcC
Q 046257 368 NFFCQMTREG 377 (838)
Q Consensus 368 ~l~~~m~~~g 377 (838)
.+|...+...
T Consensus 245 ~iy~~~i~~~ 254 (652)
T KOG2376|consen 245 SIYVDIIKRN 254 (652)
T ss_pred HHHHHHHHhc
Confidence 9999888763
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.68 E-value=5.5e-07 Score=88.23 Aligned_cols=225 Identities=12% Similarity=0.117 Sum_probs=176.2
Q ss_pred hHHHHHHHHcCCHHHHHHHHHhcCC--CCcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCChh
Q 046257 417 TALLNAYVKKGILDEAAKVFELIDE--KDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSA 494 (838)
Q Consensus 417 ~~Li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 494 (838)
+-+...|.+.|.+.+|.+.|+.-.+ +-+.+|-.|-..|.+..+++.|+.+|.+-.+ ..|-.+||..-
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld--~fP~~VT~l~g--------- 295 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLD--SFPFDVTYLLG--------- 295 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhh--cCCchhhhhhh---------
Confidence 5677788888888888888876543 4566777788888888888888888877665 36666666432
Q ss_pred hHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 046257 495 AVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKE 571 (838)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 571 (838)
....+...++.++|.++++... .-|+.+...+..+|.-.++++-|+..|++
T Consensus 296 --------------------------~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRR 349 (478)
T KOG1129|consen 296 --------------------------QARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRR 349 (478)
T ss_pred --------------------------hHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHH
Confidence 2233556678889999998776 33666667778889999999999999999
Q ss_pred HHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCC--CchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCH
Q 046257 572 MRRQDLEFDGITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPT--MEHYSCMVDLYSRAGMLEKAMDIINRMPFAASA 649 (838)
Q Consensus 572 m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~ 649 (838)
+++.|+. +...|..+.-+|..++++|-++.-|++.... .-.|+ .++|-.+.....-.|++.-|.+-|+-.
T Consensus 350 iLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrla------ 421 (478)
T KOG1129|consen 350 ILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLA------ 421 (478)
T ss_pred HHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHH------
Confidence 9999965 6678888999999999999999999888632 23343 345666777777788888888888754
Q ss_pred HHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 046257 650 TVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMNDR 698 (838)
Q Consensus 650 ~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~~ 698 (838)
+.-+|++.++|+.|+-+-.+.|+.++|..+++..+..
T Consensus 422 ------------L~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 422 ------------LTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred ------------hccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 6678999999999999999999999999999988764
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.1e-06 Score=88.25 Aligned_cols=151 Identities=13% Similarity=0.148 Sum_probs=117.6
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHhc----cCCH
Q 046257 522 VTMYSKKGNIESASEVFKRQRKRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGITFIGVITACTH----AGLV 597 (838)
Q Consensus 522 i~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~----~g~~ 597 (838)
..+|...|++++|.++++.. .+.......+..|.+.++++.|.+.++.|.+ +..|. +...+..++.. .+.+
T Consensus 109 A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~--~~eD~-~l~qLa~awv~l~~g~e~~ 183 (290)
T PF04733_consen 109 ATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQ--IDEDS-ILTQLAEAWVNLATGGEKY 183 (290)
T ss_dssp HHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC--CSCCH-HHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcH-HHHHHHHHHHHHHhCchhH
Confidence 34577889999999988876 4566667788899999999999999999988 55554 34444444422 3469
Q ss_pred HHHHHHHHHHHhcCCccCCCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHH
Q 046257 598 DEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSN 677 (838)
Q Consensus 598 ~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~ 677 (838)
.+|..+|+.+...+ .+++...+.+..+....|++++|++++++. ++.+|+++.+...++-
T Consensus 184 ~~A~y~f~El~~~~--~~t~~~lng~A~~~l~~~~~~eAe~~L~~a------------------l~~~~~~~d~LaNliv 243 (290)
T PF04733_consen 184 QDAFYIFEELSDKF--GSTPKLLNGLAVCHLQLGHYEEAEELLEEA------------------LEKDPNDPDTLANLIV 243 (290)
T ss_dssp CHHHHHHHHHHCCS----SHHHHHHHHHHHHHCT-HHHHHHHHHHH------------------CCC-CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCCHHHHHHHHHHH------------------HHhccCCHHHHHHHHH
Confidence 99999999997544 467788899999999999999999999986 6889999999999999
Q ss_pred HHHhcCCc-hHHHHHHHHHhh
Q 046257 678 MYAATGHW-QERARVRKLMND 697 (838)
Q Consensus 678 ~y~~~g~~-~~a~~~~~~m~~ 697 (838)
+....|+. +.+.+.+..++.
T Consensus 244 ~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 244 CSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHhCCChhHHHHHHHHHHH
Confidence 99999999 667788888875
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.61 E-value=5e-06 Score=90.62 Aligned_cols=197 Identities=18% Similarity=0.159 Sum_probs=138.5
Q ss_pred hhhHHHHHHHHhcCCChHHHHHHHHHHHHh-----CC-CCch-hHHHHHHHHhHcCCChhHHHHHHhcCCC-------C-
Q 046257 179 SFTFSTVLGVLADEGIVATAVQVHTMVIKN-----GG-EVVT-SVCNALISMYLKSKMVRDARAVFDGMED-------R- 243 (838)
Q Consensus 179 ~~t~~~ll~~~~~~g~~~~a~~l~~~~~~~-----g~-~~~~-~~~~~li~~y~~~g~~~~A~~~f~~m~~-------~- 243 (838)
..|+..+...|...|+++.|..++.+.++. |. .|.+ ...+.+...|...+++.+|..+|+++.. +
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 346666888888889999999888888765 21 2222 2334466788888888888888876642 1
Q ss_pred ---CcchHHHHHHHHHhCCChHHHHHHHHHhhh-----CCC-CCChh-hHHHHHHHHhccCcHHHHHHHHHHHHHhC---
Q 046257 244 ---DSITWNSMVAGYVTNELHMEAFETFNNMGL-----AGA-ELTRS-TFVSVIKLCATTKELRLARQLHSQVLKNG--- 310 (838)
Q Consensus 244 ---~~~~~n~li~~~~~~g~~~~A~~l~~~m~~-----~g~-~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g--- 310 (838)
-..+++.|-..|.+.|++++|...+++..+ .|. .|... -++.+...|...+++++|..++....+.-
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 134567777788999998888877766432 122 22332 35666777888899999988888765431
Q ss_pred CCCC----hhHHHHHHHHHHcCCChHHHHHHHHhccc------CC-C---eeehHHHHHHHHHcCChHHHHHHHHHhhh
Q 046257 311 IDFD----HNIRTGLMVAYSKCGKMEDASKIFSMMRE------MK-D---VVSWTAMISGHLQNGAIDLAVNFFCQMTR 375 (838)
Q Consensus 311 ~~~~----~~~~~~Li~~y~~~g~~~~A~~~f~~~~~------~~-~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 375 (838)
+.++ ..+++.|...|.+.|++++|+++|++... .. + -...|.|...|.+.++.++|.++|.+-..
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~ 437 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKD 437 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 2222 45788999999999999999999988753 11 1 23467788889999999999999887654
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.60 E-value=0.00036 Score=75.41 Aligned_cols=130 Identities=17% Similarity=0.189 Sum_probs=89.4
Q ss_pred CCchhHHH--HHHHHHHhcCCHHHHHHHHHhcCC--CCHH-HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHH
Q 046257 512 NNALCVSS--ALVTMYSKKGNIESASEVFKRQRK--RDLV-SWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGITFIG 586 (838)
Q Consensus 512 ~~~~~~~~--~li~~y~k~g~~~~A~~~f~~~~~--~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ 586 (838)
+|...+|+ .+..-|-++|+++.|+..++.... |..+ -|-.-...+...|+.++|...+++..+.+ .||...=.-
T Consensus 366 ~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsK 444 (700)
T KOG1156|consen 366 PPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSK 444 (700)
T ss_pred CchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHH
Confidence 34444443 467788999999999999998874 3332 34445577888999999999999999864 445432223
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhcCCc--cCCCchHHHH------HHHHHhcCCHHHHHHHHhhC
Q 046257 587 VITACTHAGLVDEGQQYFDIMVNEHHI--YPTMEHYSCM------VDLYSRAGMLEKAMDIINRM 643 (838)
Q Consensus 587 ll~a~~~~g~~~~a~~~~~~m~~~~~~--~p~~~~y~~l------v~~l~r~G~~~~A~~~~~~m 643 (838)
-..-..++..+++|.++.....+. |. .-+..-..|| ..+|.|.|++.+|++=|...
T Consensus 445 cAKYmLrAn~i~eA~~~~skFTr~-~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 445 CAKYMLRANEIEEAEEVLSKFTRE-GFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEI 508 (700)
T ss_pred HHHHHHHccccHHHHHHHHHhhhc-ccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence 334445788999999998877633 33 1222222333 47889999999998877665
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.52 E-value=0.00088 Score=68.49 Aligned_cols=286 Identities=12% Similarity=0.063 Sum_probs=159.7
Q ss_pred CCChHHHHHHHHHhhhCC-CCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCChh-HHHHHHHHHHcCCChHHHH
Q 046257 258 NELHMEAFETFNNMGLAG-AELTRSTFVSVIKLCATTKELRLARQLHSQVLKNGIDFDHN-IRTGLMVAYSKCGKMEDAS 335 (838)
Q Consensus 258 ~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~-~~~~Li~~y~~~g~~~~A~ 335 (838)
.++...|..++-...... ++-|......+.+.+...|+.+++...|+...-.. |+.. ......-.+.+.|+.++..
T Consensus 209 ~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py~i~~MD~Ya~LL~~eg~~e~~~ 286 (564)
T KOG1174|consen 209 NFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PDNVEAMDLYAVLLGQEGGCEQDS 286 (564)
T ss_pred hcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hhhhhhHHHHHHHHHhccCHhhHH
Confidence 344444444444433333 33344455566666666666666666666654332 2111 1111122334555555555
Q ss_pred HHHHhccc--CCCeeehHHHHHHHHHcCChHHHHHHHHHhhhcCCCCCcccHHHHHhhCCCCChhHHHHHHHHhhccCCc
Q 046257 336 KIFSMMRE--MKDVVSWTAMISGHLQNGAIDLAVNFFCQMTREGVRPNGFTYSIILTAQPAVSPFQVHAHIIKTNYEKSF 413 (838)
Q Consensus 336 ~~f~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~ 413 (838)
.+...+-. ......|-.-........+++.|+.+-++-++. .|+..--
T Consensus 287 ~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~--~~r~~~a---------------------------- 336 (564)
T KOG1174|consen 287 ALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDS--EPRNHEA---------------------------- 336 (564)
T ss_pred HHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhcc--CcccchH----------------------------
Confidence 55444431 112223433344444556666666666655442 1221111
Q ss_pred chhhHHHHHHHHcCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHH-HHHh
Q 046257 414 SVGTALLNAYVKKGILDEAAKVFELIDE---KDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSV-INAC 489 (838)
Q Consensus 414 ~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l-l~a~ 489 (838)
+-.-...+...|+.++|.-.|..... -+..+|.-|+..|...|++.||.-+-+..... +..+..+.+.+ -..|
T Consensus 337 --lilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~ 413 (564)
T KOG1174|consen 337 --LILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVL 413 (564)
T ss_pred --HHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceee
Confidence 00112345567888998888876543 37789999999999999999988776664432 23344444444 1344
Q ss_pred cCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCChHHHHH
Q 046257 490 TAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQR--KRDLVSWNSMICGYAQHGHTKKALE 567 (838)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~ 567 (838)
..-...-+.++.+++..++.... -....+.+.+.+..-|..+++.+++++-. .+|...-+.|...+...+.+++|++
T Consensus 414 ~~dp~~rEKAKkf~ek~L~~~P~-Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~ 492 (564)
T KOG1174|consen 414 FPDPRMREKAKKFAEKSLKINPI-YTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAME 492 (564)
T ss_pred ccCchhHHHHHHHHHhhhccCCc-cHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHH
Confidence 44335566777776665554321 13344556666777777777777776654 5677777777777777777777777
Q ss_pred HHHHHHHcCCCCCh
Q 046257 568 VFKEMRRQDLEFDG 581 (838)
Q Consensus 568 l~~~m~~~g~~pd~ 581 (838)
.|...+. +.|+.
T Consensus 493 ~y~~ALr--~dP~~ 504 (564)
T KOG1174|consen 493 YYYKALR--QDPKS 504 (564)
T ss_pred HHHHHHh--cCccc
Confidence 7777766 55543
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.50 E-value=8.6e-05 Score=82.15 Aligned_cols=289 Identities=13% Similarity=0.114 Sum_probs=181.8
Q ss_pred HHHHcCChHHHHHHHHHhhhcCCCCCcccHHHHHhhCCCCChhHHHHHHHHhhccCCcchhhHHHHHHHHcCCHHHHHHH
Q 046257 356 GHLQNGAIDLAVNFFCQMTREGVRPNGFTYSIILTAQPAVSPFQVHAHIIKTNYEKSFSVGTALLNAYVKKGILDEAAKV 435 (838)
Q Consensus 356 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~ 435 (838)
.+...|++++|++.+.+-.. ..+|..++. ......|.+.|+.++|..+
T Consensus 13 il~e~g~~~~AL~~L~~~~~--~I~Dk~~~~------------------------------E~rA~ll~kLg~~~eA~~~ 60 (517)
T PF12569_consen 13 ILEEAGDYEEALEHLEKNEK--QILDKLAVL------------------------------EKRAELLLKLGRKEEAEKI 60 (517)
T ss_pred HHHHCCCHHHHHHHHHhhhh--hCCCHHHHH------------------------------HHHHHHHHHcCCHHHHHHH
Confidence 45677888888888866433 344444442 4567778889999999999
Q ss_pred HHhcCCCCc--ch-HHHHHHHHHhc-----CCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCChhhHHHHHHHHHHHH
Q 046257 436 FELIDEKDI--VA-WSAMLAGYAQI-----GDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFHACSI 507 (838)
Q Consensus 436 f~~~~~~~~--~~-~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~ 507 (838)
+..+..+|+ .. |..+..+..-. ...+...++|+++... -|.......+.=.+.....-...+..+....+
T Consensus 61 y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~--yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l 138 (517)
T PF12569_consen 61 YRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEK--YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQL 138 (517)
T ss_pred HHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHh--CccccchhHhhcccCCHHHHHHHHHHHHHHHH
Confidence 988876433 33 34444444222 2456677888887664 24443333322122221122233445555556
Q ss_pred HhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC------------------CCCHHHH--HHHHHHHHHcCChHHHHH
Q 046257 508 KAKLNNALCVSSALVTMYSKKGNIESASEVFKRQR------------------KRDLVSW--NSMICGYAQHGHTKKALE 567 (838)
Q Consensus 508 ~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~------------------~~~~~~~--~~li~~~~~~g~~~~A~~ 567 (838)
+.|++ .+++.|-..|......+-..+++.... .|....| .-+...|-..|++++|++
T Consensus 139 ~KgvP---slF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~ 215 (517)
T PF12569_consen 139 RKGVP---SLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALE 215 (517)
T ss_pred hcCCc---hHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 66654 466667777776655555555554421 2333345 445667889999999999
Q ss_pred HHHHHHHcCCCCCh-hHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccC-CCchHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 046257 568 VFKEMRRQDLEFDG-ITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYP-TMEHYSCMVDLYSRAGMLEKAMDIINRMPF 645 (838)
Q Consensus 568 l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~ 645 (838)
..++.++ ..|+. ..|..-...+-|.|++++|.+.++..+. +.+ |...-+-.+..+.|+|++++|++.+....
T Consensus 216 ~Id~aI~--htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~---LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ft- 289 (517)
T PF12569_consen 216 YIDKAIE--HTPTLVELYMTKARILKHAGDLKEAAEAMDEARE---LDLADRYINSKCAKYLLRAGRIEEAEKTASLFT- 289 (517)
T ss_pred HHHHHHh--cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---CChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhc-
Confidence 9999999 67874 5677888899999999999999998873 233 44444556788899999999999988664
Q ss_pred CCCHHHHHHHHH-HHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHh
Q 046257 646 AASATVWRTVLA-ACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMN 696 (838)
Q Consensus 646 ~~~~~~w~~ll~-~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~ 696 (838)
.++.....-|.. -| .-...--++.|.+.|++..|.+-+..+.
T Consensus 290 r~~~~~~~~L~~mQc---------~Wf~~e~a~a~~r~~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 290 REDVDPLSNLNDMQC---------MWFETECAEAYLRQGDYGLALKRFHAVL 332 (517)
T ss_pred CCCCCcccCHHHHHH---------HHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 332110000100 01 1122345778888999888887776654
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.7e-06 Score=83.53 Aligned_cols=224 Identities=13% Similarity=0.082 Sum_probs=156.0
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHcC
Q 046257 148 TSLLSGYARNKMNDRVLELFHRMQVEGIKPNSFTFSTVLGVLADEGIVATAVQVHTMVIKNGGEVVTSVCNALISMYLKS 227 (838)
Q Consensus 148 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~ 227 (838)
+.|.+.|.+.|.+.+|.+.|+.-.+. .|-..||..|-++|.+..+...|..++.+-++. ++.|+.....+...+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 45667777777777777777766554 455667777777777777777777777766654 244555555566666667
Q ss_pred CChhHHHHHHhcCCC---CCcchHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHH
Q 046257 228 KMVRDARAVFDGMED---RDSITWNSMVAGYVTNELHMEAFETFNNMGLAGAELTRSTFVSVIKLCATTKELRLARQLHS 304 (838)
Q Consensus 228 g~~~~A~~~f~~m~~---~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 304 (838)
++.++|.+++....+ -|+.+...+..+|.-.++++-|+..|+++.+.|+. +...|..+--+|.-.++++.+..-|.
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 777778777776554 24555555667777788888888888888888754 44556666666777788888887777
Q ss_pred HHHHhCCCCC--hhHHHHHHHHHHcCCChHHHHHHHHhccc--CCCeeehHHHHHHHHHcCChHHHHHHHHHhhh
Q 046257 305 QVLKNGIDFD--HNIRTGLMVAYSKCGKMEDASKIFSMMRE--MKDVVSWTAMISGHLQNGAIDLAVNFFCQMTR 375 (838)
Q Consensus 305 ~~~~~g~~~~--~~~~~~Li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 375 (838)
..+..--.|+ ..+|-.|-......|++..|.+.|+-... ..+..++|.|.-.-.+.|+.++|..++.....
T Consensus 383 RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 383 RALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 7766543332 34666676677777888888888887652 22345688887777888888888888887665
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.47 E-value=0.0026 Score=67.57 Aligned_cols=181 Identities=12% Similarity=0.114 Sum_probs=136.3
Q ss_pred chHHHHHHHHhhcC-CCCCCHhhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCC-chhHHHHHHHHHHhcCCHHHHHHH
Q 046257 460 TEGAVKIYRQLTSE-GVKPNEFTFSSVINACTAPSAAVEQGKQFHACSIKAKLNN-ALCVSSALVTMYSKKGNIESASEV 537 (838)
Q Consensus 460 ~~~A~~l~~~m~~~-g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~li~~y~k~g~~~~A~~~ 537 (838)
.+...+.+++.... ...|+ .+|...++.--+. ..++.++.++..+.+.+..+ ++.+.++++..|| .++.+-|.++
T Consensus 347 ~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~-eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrI 423 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRA-EGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRI 423 (656)
T ss_pred hhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHh-hhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHH
Confidence 44555666666553 23444 4566666666666 88999999999999988777 8999999999887 4789999999
Q ss_pred HHhcC--CCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh--hHHHHHHHHHhccCCHHHHHHHHHHHHhcCC
Q 046257 538 FKRQR--KRDL-VSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDG--ITFIGVITACTHAGLVDEGQQYFDIMVNEHH 612 (838)
Q Consensus 538 f~~~~--~~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 612 (838)
|+.-. -+|. .--+..+.-+...|+-..|..+|++.+..++.||. ..|...|.--+.-|++....++-+++...+.
T Consensus 424 FeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 424 FELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred HHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 98665 2344 44466788888889999999999999999888885 5799999999999999999999888876665
Q ss_pred --ccCCCchHHHHHHHHHhcCCHHHHHHHHhhC
Q 046257 613 --IYPTMEHYSCMVDLYSRAGMLEKAMDIINRM 643 (838)
Q Consensus 613 --~~p~~~~y~~lv~~l~r~G~~~~A~~~~~~m 643 (838)
..|...+-..+++.|+-.+....-..-++.+
T Consensus 504 ~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 504 ADQEYEGNETALFVDRYGILDLYPCSLDELKFL 536 (656)
T ss_pred hhhcCCCChHHHHHHHHhhcccccccHHHHHhh
Confidence 5555556667788887766654444333333
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.43 E-value=2.8e-07 Score=60.14 Aligned_cols=32 Identities=25% Similarity=0.596 Sum_probs=21.3
Q ss_pred CccCCCchHHHHHHHHHhcCCHHHHHHHHhhC
Q 046257 612 HIYPTMEHYSCMVDLYSRAGMLEKAMDIINRM 643 (838)
Q Consensus 612 ~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~~m 643 (838)
|+.||..+|++||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 55666666666666666666666666666666
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.4e-05 Score=80.85 Aligned_cols=162 Identities=12% Similarity=0.096 Sum_probs=119.8
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcC--CC-CH---HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChh----H
Q 046257 514 ALCVSSALVTMYSKKGNIESASEVFKRQR--KR-DL---VSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGI----T 583 (838)
Q Consensus 514 ~~~~~~~li~~y~k~g~~~~A~~~f~~~~--~~-~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~----t 583 (838)
....+-.+...|.+.|++++|...|+++. .| +. ..|..+...|...|++++|+..|+++.+ ..|+.. +
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIR--LHPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--HCcCCCchHHH
Confidence 34445556667888899999999998765 23 22 4677788889999999999999999988 455432 3
Q ss_pred HHHHHHHHhcc--------CCHHHHHHHHHHHHhcCCccCCCch-H-----------------HHHHHHHHhcCCHHHHH
Q 046257 584 FIGVITACTHA--------GLVDEGQQYFDIMVNEHHIYPTMEH-Y-----------------SCMVDLYSRAGMLEKAM 637 (838)
Q Consensus 584 ~~~ll~a~~~~--------g~~~~a~~~~~~m~~~~~~~p~~~~-y-----------------~~lv~~l~r~G~~~~A~ 637 (838)
+..+..++... |+.++|.+.|+.+.+.+ |+... + ..+.+.|.+.|++++|.
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~ 186 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY---PNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAI 186 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC---CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHH
Confidence 44444455543 77888999999887543 43321 1 24567788999999999
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHHhccCC---CCchhHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 046257 638 DIINRMPFAASATVWRTVLAACRLISLQP---HDSAIYVLLSNMYAATGHWQERARVRKLMNDR 698 (838)
Q Consensus 638 ~~~~~m~~~~~~~~w~~ll~~c~~~~l~P---~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~~ 698 (838)
..+++. ++..| ..+..+..++.+|...|++++|...++.+..+
T Consensus 187 ~~~~~a------------------l~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 187 NRFETV------------------VENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHH------------------HHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 999876 44444 34578999999999999999999999988754
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=3.5e-05 Score=80.49 Aligned_cols=190 Identities=11% Similarity=-0.042 Sum_probs=92.7
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHcCCChhHHHHHHhcCCC--C-CcchHHHHHHHHHhC
Q 046257 182 FSTVLGVLADEGIVATAVQVHTMVIKNGGEVVTSVCNALISMYLKSKMVRDARAVFDGMED--R-DSITWNSMVAGYVTN 258 (838)
Q Consensus 182 ~~~ll~~~~~~g~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~-~~~~~n~li~~~~~~ 258 (838)
|..+...+...|+.++|...|..+++.. +.+...++.+...|...|++++|...|+...+ | +..+|..+...+...
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~ 145 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYG 145 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 3334444445555555555555555443 33445555555555555555555555555432 2 234455555555666
Q ss_pred CChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHH
Q 046257 259 ELHMEAFETFNNMGLAGAELTRSTFVSVIKLCATTKELRLARQLHSQVLKNGIDFDHNIRTGLMVAYSKCGKMEDASKIF 338 (838)
Q Consensus 259 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f 338 (838)
|++++|++.|++..+. .|+..........+...++.++|...+....... .++... ..+...+......+++.+.+
T Consensus 146 g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~-~~~~~~-~~~~~~~lg~~~~~~~~~~~ 221 (296)
T PRK11189 146 GRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL-DKEQWG-WNIVEFYLGKISEETLMERL 221 (296)
T ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-CccccH-HHHHHHHccCCCHHHHHHHH
Confidence 6666666666665543 2332211111122233455666666665443222 222211 22333222222222222222
Q ss_pred Hhccc------CCCeeehHHHHHHHHHcCChHHHHHHHHHhhhc
Q 046257 339 SMMRE------MKDVVSWTAMISGHLQNGAIDLAVNFFCQMTRE 376 (838)
Q Consensus 339 ~~~~~------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 376 (838)
..-.+ .+....|..+...+.+.|+.++|+..|++..+.
T Consensus 222 ~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 222 KAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred HhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 21110 122346777788888888888888888887764
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.0011 Score=70.27 Aligned_cols=221 Identities=16% Similarity=0.155 Sum_probs=120.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHhcCC--CCcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCChhh
Q 046257 418 ALLNAYVKKGILDEAAKVFELIDE--KDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAA 495 (838)
Q Consensus 418 ~Li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 495 (838)
.+.++..+..+++.|.+-++...+ .++.-++....+|...|...+....-....+.|-. ...-|+.+-.+
T Consensus 229 ~lgnaaykkk~f~~a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~------- 300 (539)
T KOG0548|consen 229 ELGNAAYKKKDFETAIQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKA------- 300 (539)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHH-------
Confidence 455666666777777776665543 34444666677788777777766655554433210 00001110000
Q ss_pred HHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 046257 496 VEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQRK--RDLVSWNSMICGYAQHGHTKKALEVFKEMR 573 (838)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 573 (838)
...+...|.+.++++.|...|++... ++... ..+....++++...+...
T Consensus 301 ----------------------~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~-------ls~lk~~Ek~~k~~e~~a 351 (539)
T KOG0548|consen 301 ----------------------LARLGNAYTKREDYEGAIKYYQKALTEHRTPDL-------LSKLKEAEKALKEAERKA 351 (539)
T ss_pred ----------------------HHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHH-------HHHHHHHHHHHHHHHHHH
Confidence 01133456666777777777766431 12111 122233445555444444
Q ss_pred HcCCCCChh-HHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHH
Q 046257 574 RQDLEFDGI-TFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVW 652 (838)
Q Consensus 574 ~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w 652 (838)
- +.|+.. -...=.+.+.+.|++.+|...+.++++.. +-|...|+.-.-+|.+.|.+.+|.+-.+..
T Consensus 352 ~--~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~--P~Da~lYsNRAac~~kL~~~~~aL~Da~~~--------- 418 (539)
T KOG0548|consen 352 Y--INPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD--PEDARLYSNRAACYLKLGEYPEALKDAKKC--------- 418 (539)
T ss_pred h--hChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC--CchhHHHHHHHHHHHHHhhHHHHHHHHHHH---------
Confidence 4 344431 12222455666777777777777766332 223455666666677777777666655443
Q ss_pred HHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhh
Q 046257 653 RTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMND 697 (838)
Q Consensus 653 ~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~ 697 (838)
++++|+....|..-+-++....+|++|.+.+.+-.+
T Consensus 419 ---------ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale 454 (539)
T KOG0548|consen 419 ---------IELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALE 454 (539)
T ss_pred ---------HhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566666666676666667777777777766666554
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.00077 Score=71.54 Aligned_cols=107 Identities=11% Similarity=0.096 Sum_probs=77.5
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCC-chHHHHHHHHHhc
Q 046257 553 ICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTM-EHYSCMVDLYSRA 630 (838)
Q Consensus 553 i~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~y~~lv~~l~r~ 630 (838)
...+.+.|++..|+..|.+++.. .|+ ...|..-..++.+.|.+.+|+.-.+..++. .|+. .-|.-=..++.-.
T Consensus 365 Gne~Fk~gdy~~Av~~YteAIkr--~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL---~p~~~kgy~RKg~al~~m 439 (539)
T KOG0548|consen 365 GNEAFKKGDYPEAVKHYTEAIKR--DPEDARLYSNRAACYLKLGEYPEALKDAKKCIEL---DPNFIKAYLRKGAALRAM 439 (539)
T ss_pred HHHHHhccCHHHHHHHHHHHHhc--CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc---CchHHHHHHHHHHHHHHH
Confidence 56778889999999999999995 465 678888888999999999999887776633 3432 2232223334444
Q ss_pred CCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhc
Q 046257 631 GMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAAT 682 (838)
Q Consensus 631 G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~ 682 (838)
.++++|.+.+++. ++++|++...-..+.+.+...
T Consensus 440 k~ydkAleay~ea------------------le~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 440 KEYDKALEAYQEA------------------LELDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred HHHHHHHHHHHHH------------------HhcCchhHHHHHHHHHHHHHh
Confidence 4666777666665 788998888888877777763
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.00053 Score=77.53 Aligned_cols=160 Identities=13% Similarity=0.187 Sum_probs=97.9
Q ss_pred HhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccCCHHHHH
Q 046257 526 SKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITACTHAGLVDEGQ 601 (838)
Q Consensus 526 ~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~ 601 (838)
.--|++.-|.-.|-+-. +.+..+|..+...+.++.+++.|...|...+. +.|+ .+.|......-...|+.-+..
T Consensus 827 sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qS--LdP~nl~~WlG~Ali~eavG~ii~~~ 904 (1238)
T KOG1127|consen 827 SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQS--LDPLNLVQWLGEALIPEAVGRIIERL 904 (1238)
T ss_pred hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhh--cCchhhHHHHHHHHhHHHHHHHHHHH
Confidence 33455555555554332 44667777777777777777777777777766 5665 345655555555566666666
Q ss_pred HHHHH---HHhcCCccCCCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHH
Q 046257 602 QYFDI---MVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNM 678 (838)
Q Consensus 602 ~~~~~---m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~ 678 (838)
.+|.. .....|-.|+..-+-|....-...|+.++-..-.+++ |.+=+..-+.++-.|++..+|...+..
T Consensus 905 ~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki--------~sAs~al~~yf~~~p~~~fAy~~~gst 976 (1238)
T KOG1127|consen 905 ILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKI--------SSASLALSYYFLGHPQLCFAYAANGST 976 (1238)
T ss_pred HHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhh--------hhhHHHHHHHHhcCcchhHHHHHHHhH
Confidence 66643 1111233345555555555555667655544444333 444444445677788888888888888
Q ss_pred HHhcCCchHHHHHHHHH
Q 046257 679 YAATGHWQERARVRKLM 695 (838)
Q Consensus 679 y~~~g~~~~a~~~~~~m 695 (838)
.-+.+.+++|.++....
T Consensus 977 lEhL~ey~~a~ela~Rl 993 (1238)
T KOG1127|consen 977 LEHLEEYRAALELATRL 993 (1238)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88888888887766554
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=9.2e-06 Score=74.51 Aligned_cols=123 Identities=11% Similarity=-0.036 Sum_probs=99.8
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcc
Q 046257 536 EVFKRQRKRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITACTHAGLVDEGQQYFDIMVNEHHIY 614 (838)
Q Consensus 536 ~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~ 614 (838)
.+|++...-++..+..+...+.+.|++++|+..|++... +.|+ ...+..+..+|...|++++|...|+.... +.
T Consensus 14 ~~~~~al~~~p~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~---l~ 88 (144)
T PRK15359 14 DILKQLLSVDPETVYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM---LD 88 (144)
T ss_pred HHHHHHHHcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh---cC
Confidence 445555444555567778888999999999999999998 6665 56788888899999999999999999883 34
Q ss_pred C-CCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHh
Q 046257 615 P-TMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAA 681 (838)
Q Consensus 615 p-~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~ 681 (838)
| +...+..+...+.+.|++++|.+.+++. +++.|+++..+...+++...
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~A------------------l~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTA------------------IKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHH------------------HHhCCCChHHHHHHHHHHHH
Confidence 5 5677888999999999999999999987 78888888888877766543
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.014 Score=71.88 Aligned_cols=407 Identities=11% Similarity=0.061 Sum_probs=216.4
Q ss_pred hHHHHHHHHHHHCCCC--C-C----hhhHHHHHHHHhcC----CChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHcCCC
Q 046257 161 DRVLELFHRMQVEGIK--P-N----SFTFSTVLGVLADE----GIVATAVQVHTMVIKNGGEVVTSVCNALISMYLKSKM 229 (838)
Q Consensus 161 ~~A~~l~~~m~~~g~~--p-~----~~t~~~ll~~~~~~----g~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~ 229 (838)
+.+.++++++...|+- | + .+.|..+++-+... .+.++...+|.. ....|...|+
T Consensus 292 ~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l~~~~~~~~~~lh~r---------------aa~~~~~~g~ 356 (903)
T PRK04841 292 ENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRCQWELAQELPELHRA---------------AAEAWLAQGF 356 (903)
T ss_pred CcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHHHhcCchHHHHHHHH---------------HHHHHHHCCC
Confidence 3456667777666641 1 1 24566666655421 122233333332 2334555666
Q ss_pred hhHHHHHHhcCCCCCcch--HHHHHHHHHhCCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHH
Q 046257 230 VRDARAVFDGMEDRDSIT--WNSMVAGYVTNELHMEAFETFNNMGLAGAELTRSTFVSVIKLCATTKELRLARQLHSQVL 307 (838)
Q Consensus 230 ~~~A~~~f~~m~~~~~~~--~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 307 (838)
+.+|..........+... ...........|+++.+.+++..+.......+..........+...++++++..++....
T Consensus 357 ~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~ 436 (903)
T PRK04841 357 PSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAE 436 (903)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 666666555554332111 111123345567777777777665322111222222333444556788888888887765
Q ss_pred HhCCC------CC--hhHHHHHHHHHHcCCChHHHHHHHHhccc---CCCe----eehHHHHHHHHHcCChHHHHHHHHH
Q 046257 308 KNGID------FD--HNIRTGLMVAYSKCGKMEDASKIFSMMRE---MKDV----VSWTAMISGHLQNGAIDLAVNFFCQ 372 (838)
Q Consensus 308 ~~g~~------~~--~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~----~~~~~li~~~~~~g~~~~A~~l~~~ 372 (838)
+.--. +. ......+...+...|++++|...+++... ..+. ..++.+...+...|++++|...+++
T Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~ 516 (903)
T PRK04841 437 QELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQ 516 (903)
T ss_pred HhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 43111 11 11222334556678999999988887542 1121 2345555667789999999999988
Q ss_pred hhhcCCCCCcccHHHHHhhCCCCChhHHHHHHHHhhccCCcchhhHHHHHHHHcCCHHHHHHHHHhcCC-------CC--
Q 046257 373 MTREGVRPNGFTYSIILTAQPAVSPFQVHAHIIKTNYEKSFSVGTALLNAYVKKGILDEAAKVFELIDE-------KD-- 443 (838)
Q Consensus 373 m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~-------~~-- 443 (838)
.....-....... ...+...+...+...|++++|...+++..+ ++
T Consensus 517 al~~~~~~g~~~~--------------------------~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~ 570 (903)
T PRK04841 517 TEQMARQHDVYHY--------------------------ALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLP 570 (903)
T ss_pred HHHHHhhhcchHH--------------------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcccccc
Confidence 8753111110000 001123456677888999999888765432 11
Q ss_pred --cchHHHHHHHHHhcCCchHHHHHHHHhhcC--CCCCCH--hhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCc-hh
Q 046257 444 --IVAWSAMLAGYAQIGDTEGAVKIYRQLTSE--GVKPNE--FTFSSVINACTAPSAAVEQGKQFHACSIKAKLNNA-LC 516 (838)
Q Consensus 444 --~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~~--~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 516 (838)
...+..+...+...|++++|...+.+.... ...+.. ..+..+-...... ++.+.+...+.......-... ..
T Consensus 571 ~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~-G~~~~A~~~l~~a~~~~~~~~~~~ 649 (903)
T PRK04841 571 MHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLAR-GDLDNARRYLNRLENLLGNGRYHS 649 (903)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHhcccccH
Confidence 122344555666779999999888876542 111221 1121122222333 666666666555543211100 00
Q ss_pred -----HHHHHHHHHHhcCCHHHHHHHHHhcCCCCH-------HHHHHHHHHHHHcCChHHHHHHHHHHHHc----CCCCC
Q 046257 517 -----VSSALVTMYSKKGNIESASEVFKRQRKRDL-------VSWNSMICGYAQHGHTKKALEVFKEMRRQ----DLEFD 580 (838)
Q Consensus 517 -----~~~~li~~y~k~g~~~~A~~~f~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~pd 580 (838)
.....+..+...|+.+.|...+.....+.. ..+..+..++...|++++|..++++.... |..++
T Consensus 650 ~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~ 729 (903)
T PRK04841 650 DWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSD 729 (903)
T ss_pred hHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHH
Confidence 001122344557788888877766543211 11344556677778888888887776653 22222
Q ss_pred h-hHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 046257 581 G-ITFIGVITACTHAGLVDEGQQYFDIMVN 609 (838)
Q Consensus 581 ~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 609 (838)
. .+...+..++...|+.++|...+.+..+
T Consensus 730 ~a~~~~~la~a~~~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 730 LNRNLILLNQLYWQQGRKSEAQRVLLEALK 759 (903)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1 3455555666777888888777777663
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.35 E-value=1e-05 Score=83.17 Aligned_cols=151 Identities=15% Similarity=0.173 Sum_probs=102.2
Q ss_pred HHHHHcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCChhhHHHHH
Q 046257 421 NAYVKKGILDEAAKVFELIDEKDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGK 500 (838)
Q Consensus 421 ~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~ 500 (838)
.+|...|++++|.++++.. .+.......+..|.+.++++.|.+.++.|.+. ..|. +...+..
T Consensus 110 ~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD~-~l~qLa~------------- 171 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DEDS-ILTQLAE------------- 171 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCCH-HHHHHHH-------------
T ss_pred HHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcH-HHHHHHH-------------
Confidence 3456678888887777654 44555566778888888888888888888763 3333 3332322
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC
Q 046257 501 QFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDL 577 (838)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 577 (838)
+.+..+.-...+.+|..+|+++. .+++.+.|.+..++...|++++|.+++++..+ .
T Consensus 172 -------------------awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~--~ 230 (290)
T PF04733_consen 172 -------------------AWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALE--K 230 (290)
T ss_dssp -------------------HHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCC--C
T ss_pred -------------------HHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--h
Confidence 23333433346888888888876 34677788888888899999999999888776 3
Q ss_pred CCC-hhHHHHHHHHHhccCCH-HHHHHHHHHHHhc
Q 046257 578 EFD-GITFIGVITACTHAGLV-DEGQQYFDIMVNE 610 (838)
Q Consensus 578 ~pd-~~t~~~ll~a~~~~g~~-~~a~~~~~~m~~~ 610 (838)
.|+ ..|+..++.+..+.|+. +.+.+++.++...
T Consensus 231 ~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 231 DPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp -CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred ccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 454 46777788777888877 6677888887643
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.34 E-value=6e-07 Score=58.62 Aligned_cols=32 Identities=38% Similarity=0.458 Sum_probs=22.3
Q ss_pred CCCCChhHHHHHHHHHhccCCHHHHHHHHHHH
Q 046257 576 DLEFDGITFIGVITACTHAGLVDEGQQYFDIM 607 (838)
Q Consensus 576 g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m 607 (838)
|+.||.+||+.||.++++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56677777777777777777777777776666
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.00033 Score=68.32 Aligned_cols=309 Identities=12% Similarity=0.060 Sum_probs=169.4
Q ss_pred HHHHHHHHHhCCChHHHHHHHccCCCC---CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHH-HHHHHhc
Q 046257 116 STSLVDLYMRTNNVEDGRRVFDDMNES---NVVSWTSLLSGYARNKMNDRVLELFHRMQVEGIKPNSFTFST-VLGVLAD 191 (838)
Q Consensus 116 ~~~li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~-ll~~~~~ 191 (838)
+++.+..+.+..++++|++++..-.++ +....+.|..+|-...++..|-..|+++-.. .|...-|.. -.+.+.+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~ 90 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYK 90 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHH
Confidence 445555566777788888877765553 4455667777777777888888888877654 343333321 1233344
Q ss_pred CCChHHHHHHHHHHHHhCCCCchhHHHHHHH----HhHcCCChhHHHHHHhcCCC-CCcchHHHHHHHHHhCCChHHHHH
Q 046257 192 EGIVATAVQVHTMVIKNGGEVVTSVCNALIS----MYLKSKMVRDARAVFDGMED-RDSITWNSMVAGYVTNELHMEAFE 266 (838)
Q Consensus 192 ~g~~~~a~~l~~~~~~~g~~~~~~~~~~li~----~y~~~g~~~~A~~~f~~m~~-~~~~~~n~li~~~~~~g~~~~A~~ 266 (838)
.+.+..|..+...|... ....+..+. ..-..+++..++.++++.+. .+..+-+...-...+.|++++|++
T Consensus 91 A~i~ADALrV~~~~~D~-----~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvq 165 (459)
T KOG4340|consen 91 ACIYADALRVAFLLLDN-----PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQ 165 (459)
T ss_pred hcccHHHHHHHHHhcCC-----HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHH
Confidence 55666666666655432 111111111 12246888999999999884 555555555556678999999999
Q ss_pred HHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCChhHHH----HHHHHHHcCCChHHHHHHHHhcc
Q 046257 267 TFNNMGLAGAELTRSTFVSVIKLCATTKELRLARQLHSQVLKNGIDFDHNIRT----GLMVAYSKCGKMEDASKIFSMMR 342 (838)
Q Consensus 267 l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~----~Li~~y~~~g~~~~A~~~f~~~~ 342 (838)
-|+...+-+---....|+..+.. .+.++.+.|.....+++++|+...+...- -.++.-+-.+-..-+.
T Consensus 166 kFqaAlqvsGyqpllAYniALaH-y~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~------- 237 (459)
T KOG4340|consen 166 KFQAALQVSGYQPLLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQ------- 237 (459)
T ss_pred HHHHHHhhcCCCchhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHH-------
Confidence 99988765433334567766644 45688999999999999988654332211 0011000000000000
Q ss_pred cCCCeeehHHHHHHHHHcCChHHHHHHHHHhhhc-CCCCCcccHHHHH--hhCCCCChh-HHHHHHHHhhccCCcchhhH
Q 046257 343 EMKDVVSWTAMISGHLQNGAIDLAVNFFCQMTRE-GVRPNGFTYSIIL--TAQPAVSPF-QVHAHIIKTNYEKSFSVGTA 418 (838)
Q Consensus 343 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~pd~~t~~~ll--~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 418 (838)
..-+..+|.-...+.+.|+++.|.+.+.+|.-. .-..|++|...+- ++-++.++- .-...++.... -...++..
T Consensus 238 -Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~~~~p~~g~~KLqFLL~~nP-fP~ETFAN 315 (459)
T KOG4340|consen 238 -SALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNMDARPTEGFEKLQFLLQQNP-FPPETFAN 315 (459)
T ss_pred -HHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcccCCccccHHHHHHHHhcCC-CChHHHHH
Confidence 000111233333445667777777777777532 2344555553321 111111111 22222222211 22234455
Q ss_pred HHHHHHHcCCHHHHHHHHHhcCC
Q 046257 419 LLNAYVKKGILDEAAKVFELIDE 441 (838)
Q Consensus 419 Li~~y~~~g~~~~A~~~f~~~~~ 441 (838)
++-.|||..-++-|-.++.+-..
T Consensus 316 lLllyCKNeyf~lAADvLAEn~~ 338 (459)
T KOG4340|consen 316 LLLLYCKNEYFDLAADVLAENAH 338 (459)
T ss_pred HHHHHhhhHHHhHHHHHHhhCcc
Confidence 66667777777777777665443
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.00022 Score=78.95 Aligned_cols=290 Identities=11% Similarity=0.091 Sum_probs=154.1
Q ss_pred HHHhCCChHHHHHHHccCCC--CCcch-HHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHHh----c--C
Q 046257 122 LYMRTNNVEDGRRVFDDMNE--SNVVS-WTSLLSGYARNKMNDRVLELFHRMQVEGIKPNSFTFSTVLGVLA----D--E 192 (838)
Q Consensus 122 ~y~~~g~~~~A~~~f~~m~~--~~~~~-~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~----~--~ 192 (838)
.+...|++++|.+.++.-.. .|..+ .......+.+.|+.++|..+|..+.+.+ |+...|-..+..+. . .
T Consensus 13 il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~~~ 90 (517)
T PF12569_consen 13 ILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQLSD 90 (517)
T ss_pred HHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhccccc
Confidence 34455666666666654332 23332 3334455556666666666666665543 44444444333333 1 1
Q ss_pred CChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHcCCChh-HHHHHHhcCCCCCc-chHHHHHHHHHhCCChHHHHHHHHH
Q 046257 193 GIVATAVQVHTMVIKNGGEVVTSVCNALISMYLKSKMVR-DARAVFDGMEDRDS-ITWNSMVAGYVTNELHMEAFETFNN 270 (838)
Q Consensus 193 g~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~-~A~~~f~~m~~~~~-~~~n~li~~~~~~g~~~~A~~l~~~ 270 (838)
.+.+...++++.+.+.- |.......+.-.+.....+. .+...+..+..+.+ .+++.+-..|....+..-..+++..
T Consensus 91 ~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~ 168 (517)
T PF12569_consen 91 EDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEE 168 (517)
T ss_pred ccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHH
Confidence 13444455555443332 11111111111111101111 11222222223333 2334444444433333333344443
Q ss_pred hhhC----C----------CCCChh--hHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHH
Q 046257 271 MGLA----G----------AELTRS--TFVSVIKLCATTKELRLARQLHSQVLKNGIDFDHNIRTGLMVAYSKCGKMEDA 334 (838)
Q Consensus 271 m~~~----g----------~~p~~~--t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A 334 (838)
.... + -.|+.. ++..+...+...|+++.|.+..+..+++. +..+..|..-.+.|-+.|++.+|
T Consensus 169 ~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~G~~~~A 247 (517)
T PF12569_consen 169 YVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHAGDLKEA 247 (517)
T ss_pred HHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHCCCHHHH
Confidence 3221 1 123332 44555667778899999999999888875 33467788888899999999999
Q ss_pred HHHHHhccc--CCCeeehHHHHHHHHHcCChHHHHHHHHHhhhcCCCCCcccHHHHHhhCCCCChhHHHHHHHHhhccCC
Q 046257 335 SKIFSMMRE--MKDVVSWTAMISGHLQNGAIDLAVNFFCQMTREGVRPNGFTYSIILTAQPAVSPFQVHAHIIKTNYEKS 412 (838)
Q Consensus 335 ~~~f~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~ 412 (838)
.+.++.... ..|...=+..+..+.++|+.++|.+++....+.+..|-...+ +.|.....
T Consensus 248 a~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~-----------~mQc~Wf~-------- 308 (517)
T PF12569_consen 248 AEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLN-----------DMQCMWFE-------- 308 (517)
T ss_pred HHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHH-----------HHHHHHHH--------
Confidence 998888763 345555666778888999999999999888776653322111 11111111
Q ss_pred cchhhHHHHHHHHcCCHHHHHHHHHhc
Q 046257 413 FSVGTALLNAYVKKGILDEAAKVFELI 439 (838)
Q Consensus 413 ~~~~~~Li~~y~~~g~~~~A~~~f~~~ 439 (838)
.....+|.+.|++..|.+.|..+
T Consensus 309 ----~e~a~a~~r~~~~~~ALk~~~~v 331 (517)
T PF12569_consen 309 ----TECAEAYLRQGDYGLALKRFHAV 331 (517)
T ss_pred ----HHHHHHHHHHhhHHHHHHHHHHH
Confidence 23456677888888887776554
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=2.3e-05 Score=76.07 Aligned_cols=146 Identities=11% Similarity=0.157 Sum_probs=115.9
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccCCHHHH
Q 046257 522 VTMYSKKGNIESASEVFKRQRKRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITACTHAGLVDEG 600 (838)
Q Consensus 522 i~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a 600 (838)
+-+|.+.|+++....-.+.+..+. ..|...++.++++..+++.++ ..|+ ...|..+...+...|++++|
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~~~A 92 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDYDNA 92 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 446889999888755544332221 022236677889999999888 4565 56788888999999999999
Q ss_pred HHHHHHHHhcCCccC-CCchHHHHHHHH-HhcCC--HHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHH
Q 046257 601 QQYFDIMVNEHHIYP-TMEHYSCMVDLY-SRAGM--LEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLS 676 (838)
Q Consensus 601 ~~~~~~m~~~~~~~p-~~~~y~~lv~~l-~r~G~--~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~ 676 (838)
...|+...+ +.| +...+..+..++ .+.|+ .++|.+++++. ++++|+++.++..|+
T Consensus 93 ~~a~~~Al~---l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~a------------------l~~dP~~~~al~~LA 151 (198)
T PRK10370 93 LLAYRQALQ---LRGENAELYAALATVLYYQAGQHMTPQTREMIDKA------------------LALDANEVTALMLLA 151 (198)
T ss_pred HHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHH------------------HHhCCCChhHHHHHH
Confidence 999998873 445 566788888864 77787 59999999987 899999999999999
Q ss_pred HHHHhcCCchHHHHHHHHHhhC
Q 046257 677 NMYAATGHWQERARVRKLMNDR 698 (838)
Q Consensus 677 ~~y~~~g~~~~a~~~~~~m~~~ 698 (838)
..+...|++++|...++++.+.
T Consensus 152 ~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 152 SDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHcCCHHHHHHHHHHHHhh
Confidence 9999999999999999999764
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.013 Score=66.79 Aligned_cols=521 Identities=11% Similarity=0.035 Sum_probs=278.6
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHccCCC---CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCC-CCCChhhHHHHHHHH
Q 046257 114 NVSTSLVDLYMRTNNVEDGRRVFDDMNE---SNVVSWTSLLSGYARNKMNDRVLELFHRMQVEG-IKPNSFTFSTVLGVL 189 (838)
Q Consensus 114 ~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~~~ 189 (838)
..|..|-..|....+...|.+.|+..-+ -|..+|......|++..++++|..+.-.--+.. ...-...|..+--.+
T Consensus 493 paf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yy 572 (1238)
T KOG1127|consen 493 PAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYY 572 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccc
Confidence 5677888888888888888888887654 456688889999999999999988833322211 001112233333334
Q ss_pred hcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHcCCChhHHHHHHhcCCCCCcchHHH---HHHHHHhCCChHHHHH
Q 046257 190 ADEGIVATAVQVHTMVIKNGGEVVTSVCNALISMYLKSKMVRDARAVFDGMEDRDSITWNS---MVAGYVTNELHMEAFE 266 (838)
Q Consensus 190 ~~~g~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~n~---li~~~~~~g~~~~A~~ 266 (838)
-..++...+..-|+...+.. +.|...|..|..+|.++|++..|.++|++...-++.+|-. ....-+..|.+.+|+.
T Consensus 573 Lea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald 651 (1238)
T KOG1127|consen 573 LEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALD 651 (1238)
T ss_pred cCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHH
Confidence 56677888888888877765 6678889999999999999999999998877644444332 1223455678888887
Q ss_pred HHHHhhhC------CCCCChhhHHHHHHHHhccCc-------HHHHHHHHHHHHHhCC--------------------CC
Q 046257 267 TFNNMGLA------GAELTRSTFVSVIKLCATTKE-------LRLARQLHSQVLKNGI--------------------DF 313 (838)
Q Consensus 267 l~~~m~~~------g~~p~~~t~~~ll~~~~~~~~-------~~~a~~~~~~~~~~g~--------------------~~ 313 (838)
.+...... +..--..++..+...+...|- ++.+.+.+.-.+.... .|
T Consensus 652 ~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~ 731 (1238)
T KOG1127|consen 652 ALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEP 731 (1238)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcc
Confidence 77665432 111111223222222222222 2222222222222211 12
Q ss_pred ChhHHHHHHHHHHc----CCCh---H---HHHHHHHhccc-CCCeeehHHHHHHHHH----cC----ChHHHHHHHHHhh
Q 046257 314 DHNIRTGLMVAYSK----CGKM---E---DASKIFSMMRE-MKDVVSWTAMISGHLQ----NG----AIDLAVNFFCQMT 374 (838)
Q Consensus 314 ~~~~~~~Li~~y~~----~g~~---~---~A~~~f~~~~~-~~~~~~~~~li~~~~~----~g----~~~~A~~l~~~m~ 374 (838)
+ .+...++..+.+ .+.. + -+.+.+-.-.. ..+..+|-.++..|.+ .| +...|+.-+.+-.
T Consensus 732 ~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV 810 (1238)
T KOG1127|consen 732 S-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAV 810 (1238)
T ss_pred c-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHH
Confidence 2 111111222211 1111 1 01111111000 1245667777666554 12 2235566665554
Q ss_pred hcCCCCC-cccHHHHHhhCCCCChh--HHHHHHHHhhcc-CCcchhhHHHHHHHHcCCHHHHHHHHHhcCC---CCcchH
Q 046257 375 REGVRPN-GFTYSIILTAQPAVSPF--QVHAHIIKTNYE-KSFSVGTALLNAYVKKGILDEAAKVFELIDE---KDIVAW 447 (838)
Q Consensus 375 ~~g~~pd-~~t~~~ll~a~~~~~~~--~~~~~~~~~~~~-~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~ 447 (838)
+. ..| ..+++ .|...+..+++ .-|+.+...-.+ ....+|..+.-.+.+..+++.|...|..... .|.+.|
T Consensus 811 ~L--~ann~~~Wn-aLGVlsg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~W 887 (1238)
T KOG1127|consen 811 SL--CANNEGLWN-ALGVLSGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQW 887 (1238)
T ss_pred HH--hhccHHHHH-HHHHhhccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHH
Confidence 42 223 33443 33334555555 555655544433 4566777787788889999999999987764 366778
Q ss_pred HHHHHHHHhcCCchHHHHHHHHh--hc--CCCCCCHhhHHHHHHHhcCC---hhhHHHHHHHHHH--HHH---hcCCCch
Q 046257 448 SAMLAGYAQIGDTEGAVKIYRQL--TS--EGVKPNEFTFSSVINACTAP---SAAVEQGKQFHAC--SIK---AKLNNAL 515 (838)
Q Consensus 448 ~~li~~~~~~g~~~~A~~l~~~m--~~--~g~~p~~~t~~~ll~a~~~~---~~~~~~~~~~~~~--~~~---~~~~~~~ 515 (838)
--+...-...|+.-+++.+|..- .. .|--|+..-+.....--... ...+..+..+... +++ .+.+.+.
T Consensus 888 lG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~ 967 (1238)
T KOG1127|consen 888 LGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLC 967 (1238)
T ss_pred HHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchh
Confidence 77666667788888888888762 11 23333332222221111111 0122222222221 111 2445556
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcC-----CCCHHHHHHHHH----HHHHcCChHHHHHHHHHHHHcCCCCChhHHHH
Q 046257 516 CVSSALVTMYSKKGNIESASEVFKRQR-----KRDLVSWNSMIC----GYAQHGHTKKALEVFKEMRRQDLEFDGITFIG 586 (838)
Q Consensus 516 ~~~~~li~~y~k~g~~~~A~~~f~~~~-----~~~~~~~~~li~----~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ 586 (838)
..|.+.....-..+..++|.+...+.. +-|...||.... -+...|.++.|..-+.....+ .|...-..
T Consensus 968 fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~e---vdEdi~gt 1044 (1238)
T KOG1127|consen 968 FAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWME---VDEDIRGT 1044 (1238)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccchh---HHHHHhhh
Confidence 666666666666667777766665533 345666665332 334455555544433211110 01111111
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhcCCccCCCchH-HHHHHHHHhcCCHHHHHHHHhhC
Q 046257 587 VITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHY-SCMVDLYSRAGMLEKAMDIINRM 643 (838)
Q Consensus 587 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y-~~lv~~l~r~G~~~~A~~~~~~m 643 (838)
-+ +..-.++++++.+.|++...-..-..+..+. ..+....+.+|.-+.|...+-+.
T Consensus 1045 ~l-~lFfkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~ 1101 (1238)
T KOG1127|consen 1045 DL-TLFFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEV 1101 (1238)
T ss_pred hH-HHHHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHH
Confidence 11 1134678899999998876433333343333 33445567788888888765543
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.0014 Score=65.36 Aligned_cols=302 Identities=13% Similarity=0.150 Sum_probs=179.6
Q ss_pred HHHHHHcCCChHHHHHHHHhcccCCCeeehHHHH---HHHHHcCChHHHHHHHHHhhhcCCCCCcccHHHHHhhCCCCCh
Q 046257 321 LMVAYSKCGKMEDASKIFSMMREMKDVVSWTAMI---SGHLQNGAIDLAVNFFCQMTREGVRPNGFTYSIILTAQPAVSP 397 (838)
Q Consensus 321 Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~ 397 (838)
|-..+...|++.+|..-|.... ..|+..|.++. ..|...|+...|+.=|.+..+ .+||...-..
T Consensus 44 lGk~lla~~Q~sDALt~yHaAv-e~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARi---------- 110 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAV-EGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARI---------- 110 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHH-cCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHH----------
Confidence 4445556677778887777777 66666666554 456777777777777777665 3555432210
Q ss_pred hHHHHHHHHhhccCCcchhhHHHHHHHHcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCC
Q 046257 398 FQVHAHIIKTNYEKSFSVGTALLNAYVKKGILDEAAKVFELIDEKDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKP 477 (838)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 477 (838)
--...+.|.|.++.|..-|+.+.+.+..- +....++.+.-..++-..+..+
T Consensus 111 --------------------QRg~vllK~Gele~A~~DF~~vl~~~~s~-~~~~eaqskl~~~~e~~~l~~q-------- 161 (504)
T KOG0624|consen 111 --------------------QRGVVLLKQGELEQAEADFDQVLQHEPSN-GLVLEAQSKLALIQEHWVLVQQ-------- 161 (504)
T ss_pred --------------------HhchhhhhcccHHHHHHHHHHHHhcCCCc-chhHHHHHHHHhHHHHHHHHHH--------
Confidence 11234568899999999998876543310 1111111111111111111111
Q ss_pred CHhhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHh---cCCCCHHHHHHHHH
Q 046257 478 NEFTFSSVINACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKR---QRKRDLVSWNSMIC 554 (838)
Q Consensus 478 ~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~---~~~~~~~~~~~li~ 554 (838)
+++++ .. |+...+......++... +.|...+..-.++|...|++..|+.=+.. +...+....--+-.
T Consensus 162 -------l~s~~-~~-GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~ 231 (504)
T KOG0624|consen 162 -------LKSAS-GS-GDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQ 231 (504)
T ss_pred -------HHHHh-cC-CchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 11111 11 44444554444444432 44666666667778888888888755543 33556666666777
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCChhH-HH---H-------HHH--HHhccCCHHHHHHHHHHHHhcCCccCC--Cc-
Q 046257 555 GYAQHGHTKKALEVFKEMRRQDLEFDGIT-FI---G-------VIT--ACTHAGLVDEGQQYFDIMVNEHHIYPT--ME- 618 (838)
Q Consensus 555 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~t-~~---~-------ll~--a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~- 618 (838)
.+-..|+.+.++...++.++ +.||+.. |. . |-+ .....+.+.++.+-.+...+ ..|. ..
T Consensus 232 L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk---~ep~~~~ir 306 (504)
T KOG0624|consen 232 LLYTVGDAENSLKEIRECLK--LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLK---NEPEETMIR 306 (504)
T ss_pred HHHhhhhHHHHHHHHHHHHc--cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh---cCCccccee
Confidence 77888888888888888888 7888632 21 1 111 12334555555555554442 1333 11
Q ss_pred --hHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHh
Q 046257 619 --HYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMN 696 (838)
Q Consensus 619 --~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~ 696 (838)
.+..+-..+...|++.||++.-.+. ++++|+|..++.--+.+|.....+++|..-+++..
T Consensus 307 ~~~~r~~c~C~~~d~~~~eAiqqC~ev------------------L~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~ 368 (504)
T KOG0624|consen 307 YNGFRVLCTCYREDEQFGEAIQQCKEV------------------LDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKAL 368 (504)
T ss_pred eeeeheeeecccccCCHHHHHHHHHHH------------------HhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 1222334455667777777766655 78888889999989999999999999988888876
Q ss_pred h
Q 046257 697 D 697 (838)
Q Consensus 697 ~ 697 (838)
+
T Consensus 369 e 369 (504)
T KOG0624|consen 369 E 369 (504)
T ss_pred h
Confidence 5
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.00014 Score=68.76 Aligned_cols=180 Identities=19% Similarity=0.178 Sum_probs=114.0
Q ss_pred HHHHHHHcCCHHHHHHHHHhcCCCC---cchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCChhh
Q 046257 419 LLNAYVKKGILDEAAKVFELIDEKD---IVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAA 495 (838)
Q Consensus 419 Li~~y~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 495 (838)
|.-.|...|+...|.+-+++..+.| ..+|..+...|.+.|..+.|.+-|++... +.|+
T Consensus 41 Lal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls--l~p~----------------- 101 (250)
T COG3063 41 LALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALS--LAPN----------------- 101 (250)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh--cCCC-----------------
Confidence 4445555566666655555554332 23455555555555555555555555543 2222
Q ss_pred HHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC----HHHHHHHHHHHHHcCChHHHHHHHH
Q 046257 496 VEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQR-KRD----LVSWNSMICGYAQHGHTKKALEVFK 570 (838)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~-~~~----~~~~~~li~~~~~~g~~~~A~~l~~ 570 (838)
+..+.|-....+|..|++++|...|++.. .|+ ..+|..+.-+..+.|+.+.|.+.|+
T Consensus 102 ------------------~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~ 163 (250)
T COG3063 102 ------------------NGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLK 163 (250)
T ss_pred ------------------ccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHH
Confidence 23344445555777788888888887665 342 3567777777777888888888888
Q ss_pred HHHHcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHhcCCHHHHHHH
Q 046257 571 EMRRQDLEFD-GITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDI 639 (838)
Q Consensus 571 ~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~ 639 (838)
+.++ ..|+ ..++..+.......|++-+|..+++...... .++.+....-|.+--+.|+-+.|.+.
T Consensus 164 raL~--~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~--~~~A~sL~L~iriak~~gd~~~a~~Y 229 (250)
T COG3063 164 RALE--LDPQFPPALLELARLHYKAGDYAPARLYLERYQQRG--GAQAESLLLGIRIAKRLGDRAAAQRY 229 (250)
T ss_pred HHHH--hCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcc--cccHHHHHHHHHHHHHhccHHHHHHH
Confidence 8877 5565 4567777777777888888888887765332 26666666666777777777666554
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.00081 Score=72.78 Aligned_cols=193 Identities=12% Similarity=-0.032 Sum_probs=97.3
Q ss_pred cHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCccc---HHHHHHHhccCCChhhHHHHHHHHHHhCCCCChhHHH---H
Q 046257 45 EYNRLLFEYCRDSLHQEALNLFLGIRRLGLPLFGST---LSSVLKTCGCLFDHVFGRQVHCECVKSGFARDVNVST---S 118 (838)
Q Consensus 45 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~---~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~---~ 118 (838)
.|..+...+...|+...+...+.+..+.. +.+... ...-...+...|+++.+...++.+++.. +.+...++ .
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~ 85 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQAL-AARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLG 85 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHh-ccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHH
Confidence 34445555666677777766666655432 122111 1111223355677888887777777654 23333333 1
Q ss_pred HHHHHHhCCChHHHHHHHccCCCCCc---chHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCCh
Q 046257 119 LVDLYMRTNNVEDGRRVFDDMNESNV---VSWTSLLSGYARNKMNDRVLELFHRMQVEGIKPNSFTFSTVLGVLADEGIV 195 (838)
Q Consensus 119 li~~y~~~g~~~~A~~~f~~m~~~~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 195 (838)
+.......+..+.+.+.++.....+. ..+..+...+...|++++|...+++..+.. +.+...+..+...+...|++
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~ 164 (355)
T cd05804 86 AFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRF 164 (355)
T ss_pred HHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCH
Confidence 22222224555555555554222111 222334445666777777777777766543 12334455555566666666
Q ss_pred HHHHHHHHHHHHhCC-CCch--hHHHHHHHHhHcCCChhHHHHHHhcC
Q 046257 196 ATAVQVHTMVIKNGG-EVVT--SVCNALISMYLKSKMVRDARAVFDGM 240 (838)
Q Consensus 196 ~~a~~l~~~~~~~g~-~~~~--~~~~~li~~y~~~g~~~~A~~~f~~m 240 (838)
++|...+...++... .++. ..+..+...+...|+.++|..+|++.
T Consensus 165 ~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~ 212 (355)
T cd05804 165 KEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTH 212 (355)
T ss_pred HHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 666666666555421 1111 12334455555555555555555554
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=3.4e-05 Score=70.71 Aligned_cols=108 Identities=8% Similarity=0.016 Sum_probs=92.9
Q ss_pred HHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccC-CCchHHHHHHHHHhcCCHHHHHHHHhhCC
Q 046257 566 LEVFKEMRRQDLEFDGITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYP-TMEHYSCMVDLYSRAGMLEKAMDIINRMP 644 (838)
Q Consensus 566 ~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~G~~~~A~~~~~~m~ 644 (838)
..+|++..+ +.|+. +.....++...|++++|...|+.... +.| +...|..+..++.+.|++++|...+++.
T Consensus 13 ~~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~A- 84 (144)
T PRK15359 13 EDILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVM---AQPWSWRAHIALAGTWMMLKEYTTAINFYGHA- 84 (144)
T ss_pred HHHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHH-
Confidence 456777777 66775 44567788899999999999999873 345 5667888999999999999999999988
Q ss_pred CCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 046257 645 FAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMNDR 698 (838)
Q Consensus 645 ~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~~ 698 (838)
++++|+++.++..++.+|...|+.++|...++...+.
T Consensus 85 -----------------l~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 85 -----------------LMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred -----------------HhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 7899999999999999999999999999999988653
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.0027 Score=68.73 Aligned_cols=291 Identities=7% Similarity=-0.004 Sum_probs=159.2
Q ss_pred HHHHHHhccCCChhhHHHHHHHHHHhCC-CCChh-HHHHHHHHHHhCCChHHHHHHHccCCC--C-CcchHHHHHHHHHh
Q 046257 82 SSVLKTCGCLFDHVFGRQVHCECVKSGF-ARDVN-VSTSLVDLYMRTNNVEDGRRVFDDMNE--S-NVVSWTSLLSGYAR 156 (838)
Q Consensus 82 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~-~~~~li~~y~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~ 156 (838)
..+...+...++.+.+...+....+... ..+.. ........+...|++++|.+.++...+ | |...++. ...+..
T Consensus 10 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~ 88 (355)
T cd05804 10 AAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFG 88 (355)
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHH
Confidence 3333334444555555444444443322 12221 111223345667888888888877543 3 3334442 222222
Q ss_pred ----CCCchHHHHHHHHHHHCCCCCCh-hhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHcCCChh
Q 046257 157 ----NKMNDRVLELFHRMQVEGIKPNS-FTFSTVLGVLADEGIVATAVQVHTMVIKNGGEVVTSVCNALISMYLKSKMVR 231 (838)
Q Consensus 157 ----~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~ 231 (838)
.+....+.+.+.. .....|+. .....+...+...|++++|...++..++.. +.+...+..+...|...|+++
T Consensus 89 ~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~ 165 (355)
T cd05804 89 LGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFK 165 (355)
T ss_pred hcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHH
Confidence 3444444444443 11122332 233344556678888888988888888876 555677788888888888999
Q ss_pred HHHHHHhcCCCC-----Cc--chHHHHHHHHHhCCChHHHHHHHHHhhhCCC-CCChhhH-H--HHHHHHhccCcHHHHH
Q 046257 232 DARAVFDGMEDR-----DS--ITWNSMVAGYVTNELHMEAFETFNNMGLAGA-ELTRSTF-V--SVIKLCATTKELRLAR 300 (838)
Q Consensus 232 ~A~~~f~~m~~~-----~~--~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~-~--~ll~~~~~~~~~~~a~ 300 (838)
+|...+++.... +. ..|..+...+...|++++|++.|++...... .+..... + .++.-....|....+.
T Consensus 166 eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~ 245 (355)
T cd05804 166 EGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGD 245 (355)
T ss_pred HHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHH
Confidence 988888875541 11 1344677778888999999988888754322 1222111 1 2233333344333333
Q ss_pred HH---HHHHHHhCC-CCChhHHHHHHHHHHcCCChHHHHHHHHhccc--CC----Ce---eehHHHH--HHHHHcCChHH
Q 046257 301 QL---HSQVLKNGI-DFDHNIRTGLMVAYSKCGKMEDASKIFSMMRE--MK----DV---VSWTAMI--SGHLQNGAIDL 365 (838)
Q Consensus 301 ~~---~~~~~~~g~-~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~--~~----~~---~~~~~li--~~~~~~g~~~~ 365 (838)
++ ......... .............+...|+.++|.++++.+.. .. .. ..-..++ -.+...|+.++
T Consensus 246 ~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~ 325 (355)
T cd05804 246 RWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYAT 325 (355)
T ss_pred HHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHH
Confidence 33 222111110 11112223456677788888888888877753 11 11 1112223 34557899999
Q ss_pred HHHHHHHhhhc
Q 046257 366 AVNFFCQMTRE 376 (838)
Q Consensus 366 A~~l~~~m~~~ 376 (838)
|.+.+.+....
T Consensus 326 A~~~L~~al~~ 336 (355)
T cd05804 326 ALELLGPVRDD 336 (355)
T ss_pred HHHHHHHHHHH
Confidence 99999888753
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.00012 Score=84.07 Aligned_cols=129 Identities=12% Similarity=0.081 Sum_probs=95.1
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChh-HHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCC-CchHHH
Q 046257 545 DLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGI-TFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPT-MEHYSC 622 (838)
Q Consensus 545 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~ 622 (838)
++..+-.|.....+.|..++|+.+++...+ +.||.. .+..+...+.+.+.+++|...+++.. ...|+ ..+...
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l---~~~p~~~~~~~~ 159 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYF---SGGSSSAREILL 159 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHh---hcCCCCHHHHHH
Confidence 466666777777778888888888888887 777754 46667777788888888888877766 23454 455666
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHh
Q 046257 623 MVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMN 696 (838)
Q Consensus 623 lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~ 696 (838)
+..++.+.|+.++|.+.|++. +..+|+++.+++.++..+...|+.++|...+++..
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~------------------~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~ 215 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERL------------------SRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGL 215 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHH------------------HhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 677778888888888888876 44567777888888888888888888877777664
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.14 E-value=3.4e-06 Score=56.00 Aligned_cols=35 Identities=40% Similarity=0.657 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh
Q 046257 547 VSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDG 581 (838)
Q Consensus 547 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~ 581 (838)
++||+||.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999983
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00016 Score=79.24 Aligned_cols=216 Identities=16% Similarity=0.236 Sum_probs=171.0
Q ss_pred ccCCcchhhHHHHHHHHcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHH
Q 046257 409 YEKSFSVGTALLNAYVKKGILDEAAKVFELIDEKDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINA 488 (838)
Q Consensus 409 ~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 488 (838)
++|-..+...+...+.++|-..+|..+|+++ ..|.-.|..|...|+..+|.++..+-.+ -+||+.-|..+.+.
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDV 466 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhh
Confidence 4444455567888999999999999999986 5688899999999999999999888777 47888999888888
Q ss_pred hcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHH
Q 046257 489 CTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKA 565 (838)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A 565 (838)
.-.. .-.+++.++..+.... .-..+.......++++++.+.|+.-. .--..+|-....+..+.++++.|
T Consensus 467 ~~d~-s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 467 LHDP-SLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred ccCh-HHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHH
Confidence 7766 6777777776654332 00011111234689999999998644 33567899999999999999999
Q ss_pred HHHHHHHHHcCCCCCh-hHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHhcCCHHHHHHHHhhC
Q 046257 566 LEVFKEMRRQDLEFDG-ITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDIINRM 643 (838)
Q Consensus 566 ~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~~m 643 (838)
.+.|..-.. ..||+ ..|+.+-.++.+.|.-.+|...+++.. +.. ..+...|....-...+.|.+++|.+.+.++
T Consensus 539 v~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAl-Kcn-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 539 VKAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEAL-KCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHh-hcC-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 999999998 78986 579999999999999999999999987 444 344455666667788999999999998876
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00036 Score=81.50 Aligned_cols=225 Identities=12% Similarity=0.126 Sum_probs=170.1
Q ss_pred CCCcccHHHHHHHhccCCChhhHHHHHHHHHHh-CCC---CChhHHHHHHHHHHhCCChHHHHHHHccCCC-CC-cchHH
Q 046257 75 PLFGSTLSSVLKTCGCLFDHVFGRQVHCECVKS-GFA---RDVNVSTSLVDLYMRTNNVEDGRRVFDDMNE-SN-VVSWT 148 (838)
Q Consensus 75 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~---~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~-~~-~~~~~ 148 (838)
|-+...|..-+......++++.|+++.+++++. ++. --..+|.+++++-...|.-+...++|++..+ -| ...|.
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~ 1534 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHL 1534 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHH
Confidence 334456777788888889999999999888764 222 2246788888888888888999999998876 33 34688
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCC-CchhHHHHHHHHhHcC
Q 046257 149 SLLSGYARNKMNDRVLELFHRMQVEGIKPNSFTFSTVLGVLADEGIVATAVQVHTMVIKNGGE-VVTSVCNALISMYLKS 227 (838)
Q Consensus 149 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~l~~~~~~~g~~-~~~~~~~~li~~y~~~ 227 (838)
.|...|.+.+.+++|-++|+.|.+. +.-....|...+..+.+..+-+.|..++.++++.-.. ..+....-.+.+-.++
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc
Confidence 8999999999999999999999764 2345677888889999999889999999998876321 1344556666777789
Q ss_pred CChhHHHHHHhcCCC---CCcchHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCChh--hHHHHHHHHhccCcHHHHH
Q 046257 228 KMVRDARAVFDGMED---RDSITWNSMVAGYVTNELHMEAFETFNNMGLAGAELTRS--TFVSVIKLCATTKELRLAR 300 (838)
Q Consensus 228 g~~~~A~~~f~~m~~---~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~~~~~~~~~~~a~ 300 (838)
|+.+.++.+|+.... +-...|+..|..-.++|..+.+..+|++....++.|-.. .|.--|..-.+.|+-..++
T Consensus 1614 GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE 1691 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVE 1691 (1710)
T ss_pred CCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHH
Confidence 999999999998764 246789999999999999999999999998887766442 3444444333444443333
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00078 Score=65.83 Aligned_cols=307 Identities=13% Similarity=0.104 Sum_probs=173.3
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHhhhCCCCC-ChhhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCChhHHHH-HHHHH
Q 046257 248 WNSMVAGYVTNELHMEAFETFNNMGLAGAEL-TRSTFVSVIKLCATTKELRLARQLHSQVLKNGIDFDHNIRTG-LMVAY 325 (838)
Q Consensus 248 ~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~-Li~~y 325 (838)
+++.+..+.+..++.+|++++..-.+. .| +...++.+-.+|....++..|-..++++-.. .|...-|.. -...+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er--~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSL 88 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELER--SPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSL 88 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHH
Confidence 455666666777777777777665544 34 4455556666666777777777777766543 233332321 12344
Q ss_pred HcCCChHHHHHHHHhcccCCCeeehHHHHHH--HHHcCChHHHHHHHHHhhhcCCCCCcccHHHHHhhCCCCChhHHHHH
Q 046257 326 SKCGKMEDASKIFSMMREMKDVVSWTAMISG--HLQNGAIDLAVNFFCQMTREGVRPNGFTYSIILTAQPAVSPFQVHAH 403 (838)
Q Consensus 326 ~~~g~~~~A~~~f~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~ 403 (838)
-+.+.+.+|.++...|.+.++...-..-+.+ .-+.+++..+..+.++...+|
T Consensus 89 Y~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en-------------------------- 142 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN-------------------------- 142 (459)
T ss_pred HHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC--------------------------
Confidence 4556666777776666622222111111111 122444445555544443221
Q ss_pred HHHhhccCCcchhhHHHHHHHHcCCHHHHHHHHHhcCC----CCcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCH
Q 046257 404 IIKTNYEKSFSVGTALLNAYVKKGILDEAAKVFELIDE----KDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNE 479 (838)
Q Consensus 404 ~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 479 (838)
+..+.+...-...+.|+.+.|.+-|+...+ .....||.-+..| +.|+.+.|++...++.+.|++-.+
T Consensus 143 --------~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r~HP 213 (459)
T KOG4340|consen 143 --------EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHP 213 (459)
T ss_pred --------ccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCC
Confidence 111222233345688999999999988765 3456777665544 567888999999999988876333
Q ss_pred hh-HHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-----CHHHHHHHH
Q 046257 480 FT-FSSVINACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQRKR-----DLVSWNSMI 553 (838)
Q Consensus 480 ~t-~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~-----~~~~~~~li 553 (838)
.. ......+- .. ..+.....+|...+ +..+|.-.-.+.+.|+.+.|.+.+-.|+++ |++|...|.
T Consensus 214 ElgIGm~tegi-Dv-rsvgNt~~lh~Sal-------~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~A 284 (459)
T KOG4340|consen 214 ELGIGMTTEGI-DV-RSVGNTLVLHQSAL-------VEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQA 284 (459)
T ss_pred ccCccceeccC-ch-hcccchHHHHHHHH-------HHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHH
Confidence 21 00000000 00 00111111111111 111222233467889999999999999844 777776654
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHH
Q 046257 554 CGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITACTHAGLVDEGQQYFD 605 (838)
Q Consensus 554 ~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~ 605 (838)
-. -..|++.+..+-++-+++. .|= ..||..++-.|++...++-|..++.
T Consensus 285 l~-n~~~~p~~g~~KLqFLL~~--nPfP~ETFANlLllyCKNeyf~lAADvLA 334 (459)
T KOG4340|consen 285 LM-NMDARPTEGFEKLQFLLQQ--NPFPPETFANLLLLYCKNEYFDLAADVLA 334 (459)
T ss_pred Hh-cccCCccccHHHHHHHHhc--CCCChHHHHHHHHHHhhhHHHhHHHHHHh
Confidence 32 2345566666666666663 443 4799999999999988888888764
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.012 Score=72.53 Aligned_cols=366 Identities=8% Similarity=-0.007 Sum_probs=212.8
Q ss_pred HHHHHHhCCChHHHHHHHccCCCCCcch--HHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChH
Q 046257 119 LVDLYMRTNNVEDGRRVFDDMNESNVVS--WTSLLSGYARNKMNDRVLELFHRMQVEGIKPNSFTFSTVLGVLADEGIVA 196 (838)
Q Consensus 119 li~~y~~~g~~~~A~~~f~~m~~~~~~~--~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 196 (838)
....|...|++.+|..........+... ...........|++..+..++..+.......+..........+...|+++
T Consensus 347 aa~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~ 426 (903)
T PRK04841 347 AAEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYS 426 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHH
Confidence 3445666777777777666655432211 11122234456777777777666532211122222233344455678899
Q ss_pred HHHHHHHHHHHhCCC------Cc--hhHHHHHHHHhHcCCChhHHHHHHhcCCC----CCc----chHHHHHHHHHhCCC
Q 046257 197 TAVQVHTMVIKNGGE------VV--TSVCNALISMYLKSKMVRDARAVFDGMED----RDS----ITWNSMVAGYVTNEL 260 (838)
Q Consensus 197 ~a~~l~~~~~~~g~~------~~--~~~~~~li~~y~~~g~~~~A~~~f~~m~~----~~~----~~~n~li~~~~~~g~ 260 (838)
++..++..+.+.--. +. ......+...+...|++++|...+++... .+. ..++.+...+...|+
T Consensus 427 ~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~ 506 (903)
T PRK04841 427 EVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGE 506 (903)
T ss_pred HHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCC
Confidence 998888877553111 11 11222333455678999999988876432 221 234556667788999
Q ss_pred hHHHHHHHHHhhhCCC---CC--ChhhHHHHHHHHhccCcHHHHHHHHHHHHHh----CCCC---ChhHHHHHHHHHHcC
Q 046257 261 HMEAFETFNNMGLAGA---EL--TRSTFVSVIKLCATTKELRLARQLHSQVLKN----GIDF---DHNIRTGLMVAYSKC 328 (838)
Q Consensus 261 ~~~A~~l~~~m~~~g~---~p--~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----g~~~---~~~~~~~Li~~y~~~ 328 (838)
+++|...+.+.....- .+ ...++..+...+...|+++.|...+++.... +... ....+..+...+...
T Consensus 507 ~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 586 (903)
T PRK04841 507 LARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEW 586 (903)
T ss_pred HHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHh
Confidence 9999999988764311 11 1224455566777889999999988877653 2211 223345566677788
Q ss_pred CChHHHHHHHHhccc-----CC--CeeehHHHHHHHHHcCChHHHHHHHHHhhhcCCCCC-cccHHHHHhhCCCCChhHH
Q 046257 329 GKMEDASKIFSMMRE-----MK--DVVSWTAMISGHLQNGAIDLAVNFFCQMTREGVRPN-GFTYSIILTAQPAVSPFQV 400 (838)
Q Consensus 329 g~~~~A~~~f~~~~~-----~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~~~~~~ 400 (838)
|++++|...+++... .+ ....+..+...+...|+.++|.+.+.+......... ...+...
T Consensus 587 G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~------------ 654 (903)
T PRK04841 587 ARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIAN------------ 654 (903)
T ss_pred cCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhH------------
Confidence 999999988887642 11 122234455677789999999999988755211110 0000000
Q ss_pred HHHHHHhhccCCcchhhHHHHHHHHcCCHHHHHHHHHhcCCCCcc-------hHHHHHHHHHhcCCchHHHHHHHHhhcC
Q 046257 401 HAHIIKTNYEKSFSVGTALLNAYVKKGILDEAAKVFELIDEKDIV-------AWSAMLAGYAQIGDTEGAVKIYRQLTSE 473 (838)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~-------~~~~li~~~~~~g~~~~A~~l~~~m~~~ 473 (838)
.....+..+...|+.+.|...+.....+... .+..+..++...|++++|...+.+....
T Consensus 655 --------------~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~ 720 (903)
T PRK04841 655 --------------ADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNEN 720 (903)
T ss_pred --------------HHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 0011224455688999999988776543211 1345666778888999998888776542
Q ss_pred CCCCCHhhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCC-chhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 046257 474 GVKPNEFTFSSVINACTAPSAAVEQGKQFHACSIKAKLNN-ALCVSSALVTMYSKKGNIESASEVFKRQR 542 (838)
Q Consensus 474 g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~li~~y~k~g~~~~A~~~f~~~~ 542 (838)
.-. .+... ...+...+...|.+.|+.++|...+.+..
T Consensus 721 ~~~--------------------------------~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al 758 (903)
T PRK04841 721 ARS--------------------------------LRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEAL 758 (903)
T ss_pred HHH--------------------------------hCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 100 00000 11222334556788899999888887664
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00016 Score=79.12 Aligned_cols=237 Identities=15% Similarity=0.143 Sum_probs=163.6
Q ss_pred CCCChhHHHHHHHHHHcCCChHHHHHHHHhcccCCCeeehHHHHHHHHHcCChHHHHHHHHHhhhcCCCCCcccHHHHHh
Q 046257 311 IDFDHNIRTGLMVAYSKCGKMEDASKIFSMMREMKDVVSWTAMISGHLQNGAIDLAVNFFCQMTREGVRPNGFTYSIILT 390 (838)
Q Consensus 311 ~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~ 390 (838)
++|-...-..+...+.++|-...|..+|+++. .|...|.+|...|+..+|..+..+-.+ -.||..-|.
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erle------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc---- 461 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERLE------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYC---- 461 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhHH------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHH----
Confidence 45555666778889999999999999999876 688889999999999999888888776 356666663
Q ss_pred hCCCCChhHHHHHHHHhhccCCcchhhHHHHHHHHcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHh
Q 046257 391 AQPAVSPFQVHAHIIKTNYEKSFSVGTALLNAYVKKGILDEAAKVFELIDEKDIVAWSAMLAGYAQIGDTEGAVKIYRQL 470 (838)
Q Consensus 391 a~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 470 (838)
.|.+......-+++|.++++....+--.+|+.. ...+++++++.+.|+.-
T Consensus 462 ---------------------------~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~---~~~~~~fs~~~~hle~s 511 (777)
T KOG1128|consen 462 ---------------------------LLGDVLHDPSLYEKAWELSNYISARAQRSLALL---ILSNKDFSEADKHLERS 511 (777)
T ss_pred ---------------------------HhhhhccChHHHHHHHHHhhhhhHHHHHhhccc---cccchhHHHHHHHHHHH
Confidence 344444444556778888776654422222221 12357777777777664
Q ss_pred hcCCCCCCHhhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC--CC-CHH
Q 046257 471 TSEGVKPNEFTFSSVINACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQR--KR-DLV 547 (838)
Q Consensus 471 ~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~--~~-~~~ 547 (838)
.+. .|- -..+|-.+.-++.++++++.|.+.|..-. +| +..
T Consensus 512 l~~--npl-----------------------------------q~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~e 554 (777)
T KOG1128|consen 512 LEI--NPL-----------------------------------QLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAE 554 (777)
T ss_pred hhc--Ccc-----------------------------------chhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchh
Confidence 432 111 11222233334668899999999998765 44 567
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCCchHHHHHHHH
Q 046257 548 SWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLY 627 (838)
Q Consensus 548 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l 627 (838)
+||.+-.+|.+.|+-.+|...+++..+.+..| -..|..........|.+++|.+.+.++........+.++..-++...
T Consensus 555 aWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~-w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d~~vl~~iv~~~ 633 (777)
T KOG1128|consen 555 AWNNLSTAYIRLKKKKRAFRKLKEALKCNYQH-WQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDEVLLIIVRTV 633 (777)
T ss_pred hhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCC-CeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcccchhhHHHHHHH
Confidence 89999999999999999999999999976333 23344555556788999999999998875544444666665555433
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00021 Score=74.97 Aligned_cols=136 Identities=12% Similarity=0.075 Sum_probs=110.8
Q ss_pred HHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccCCHHHH
Q 046257 525 YSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITACTHAGLVDEG 600 (838)
Q Consensus 525 y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a 600 (838)
+...|++++|++.++.+. +.|+..|......+...|+..+|.+.++++.. ..|+ ......+..++.+.|+.++|
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~--l~P~~~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALA--LDPNSPLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--cCCCccHHHHHHHHHHHhcCChHHH
Confidence 446688889998888775 44677777788889999999999999999998 6788 45566778889999999999
Q ss_pred HHHHHHHHhcCCccCCCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHH
Q 046257 601 QQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYA 680 (838)
Q Consensus 601 ~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~ 680 (838)
..+++.... ..+-++..|..|..+|...|+..+|..-.-++ |+
T Consensus 394 i~~L~~~~~--~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~-----------------------------------~~ 436 (484)
T COG4783 394 IRILNRYLF--NDPEDPNGWDLLAQAYAELGNRAEALLARAEG-----------------------------------YA 436 (484)
T ss_pred HHHHHHHhh--cCCCCchHHHHHHHHHHHhCchHHHHHHHHHH-----------------------------------HH
Confidence 999988763 34457788999999999999988887776655 88
Q ss_pred hcCCchHHHHHHHHHhhCC
Q 046257 681 ATGHWQERARVRKLMNDRK 699 (838)
Q Consensus 681 ~~g~~~~a~~~~~~m~~~g 699 (838)
-.|+|++|.......+++.
T Consensus 437 ~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 437 LAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred hCCCHHHHHHHHHHHHHhc
Confidence 9999999999998887754
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00035 Score=74.70 Aligned_cols=104 Identities=15% Similarity=0.228 Sum_probs=88.1
Q ss_pred HHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC
Q 046257 503 HACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEF 579 (838)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 579 (838)
.......+...|+.+...|.-.|--.|++++|.+.|+... +.|...||-|...++...+.++|++.|++.++ ++|
T Consensus 418 Leaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP 495 (579)
T KOG1125|consen 418 LEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQP 495 (579)
T ss_pred HHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCC
Confidence 3444455656788888888888999999999999999876 44789999999999999999999999999999 899
Q ss_pred Chh-HHHHHHHHHhccCCHHHHHHHHHHHH
Q 046257 580 DGI-TFIGVITACTHAGLVDEGQQYFDIMV 608 (838)
Q Consensus 580 d~~-t~~~ll~a~~~~g~~~~a~~~~~~m~ 608 (838)
+-+ ..-.|.-+|...|.++||.++|-..+
T Consensus 496 ~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 496 GYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred CeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 953 45567778999999999999987655
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.001 Score=77.94 Aligned_cols=220 Identities=15% Similarity=0.165 Sum_probs=143.0
Q ss_pred eeehHHHHHHHHHcCChHHHHHHHHHhhhc-CCCCCcccHHHHHhhCCCCChhHHHHHHHHhhccCCcchhhHHHHHHHH
Q 046257 347 VVSWTAMISGHLQNGAIDLAVNFFCQMTRE-GVRPNGFTYSIILTAQPAVSPFQVHAHIIKTNYEKSFSVGTALLNAYVK 425 (838)
Q Consensus 347 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~y~~ 425 (838)
...|-..|....+.++.++|.+++++.... +++-...-. .+|.+++++-..
T Consensus 1458 Si~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKL----------------------------NiWiA~lNlEn~ 1509 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKL----------------------------NIWIAYLNLENA 1509 (1710)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHH----------------------------HHHHHHHhHHHh
Confidence 345666677777777777777777666542 111111111 234455555555
Q ss_pred cCCHHHHHHHHHhcCCC--CcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCChhhHHHHHHHH
Q 046257 426 KGILDEAAKVFELIDEK--DIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFH 503 (838)
Q Consensus 426 ~g~~~~A~~~f~~~~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~ 503 (838)
-|.-+...++|++..+- ....|..|...|.+.+.+++|-++|+.|.+. ..-....|...+...-.. ..-+.++.+.
T Consensus 1510 yG~eesl~kVFeRAcqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~-ne~~aa~~lL 1587 (1710)
T KOG1070|consen 1510 YGTEESLKKVFERACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQ-NEAEAARELL 1587 (1710)
T ss_pred hCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcc-cHHHHHHHHH
Confidence 56666666677666553 2345666777777777777777777777664 333445565555555555 5556666666
Q ss_pred HHHHHhcCC-CchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC
Q 046257 504 ACSIKAKLN-NALCVSSALVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEF 579 (838)
Q Consensus 504 ~~~~~~~~~-~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 579 (838)
..+++.-.. ..+.+..-.+.+-.|+|+.+.++.+|+... ++-...|+..|..-.++|+.+.+..+|++....++.|
T Consensus 1588 ~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1588 KRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred HHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 665554322 245555666777889999999999999876 4567889999999999999999999999999998887
Q ss_pred Ch--hHHHHHHHHHhccCC
Q 046257 580 DG--ITFIGVITACTHAGL 596 (838)
Q Consensus 580 d~--~t~~~ll~a~~~~g~ 596 (838)
-. ..|.-.|..-...|+
T Consensus 1668 kkmKfffKkwLeyEk~~Gd 1686 (1710)
T KOG1070|consen 1668 KKMKFFFKKWLEYEKSHGD 1686 (1710)
T ss_pred hHhHHHHHHHHHHHHhcCc
Confidence 64 334444443333343
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.99 E-value=9.2e-06 Score=53.83 Aligned_cols=35 Identities=31% Similarity=0.642 Sum_probs=32.4
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCh
Q 046257 145 VSWTSLLSGYARNKMNDRVLELFHRMQVEGIKPNS 179 (838)
Q Consensus 145 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 179 (838)
++||++|.+|++.|++++|.++|.+|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999984
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.001 Score=70.03 Aligned_cols=130 Identities=17% Similarity=0.169 Sum_probs=107.7
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHH-HHHHhccCCHHHHHHHHHHHHhcCCccCC-CchHHH
Q 046257 545 DLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGITFIGV-ITACTHAGLVDEGQQYFDIMVNEHHIYPT-MEHYSC 622 (838)
Q Consensus 545 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~l-l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~ 622 (838)
....+-...-.+...|+.++|+..++++.. -.||...|..+ ...+...+++++|.+.++.+.. ..|+ ....-.
T Consensus 305 ~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~ 379 (484)
T COG4783 305 GLAAQYGRALQTYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALA---LDPNSPLLQLN 379 (484)
T ss_pred chHHHHHHHHHHHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHH
Confidence 344455555566778999999999999988 57887766655 4578899999999999999984 4576 455667
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhh
Q 046257 623 MVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMND 697 (838)
Q Consensus 623 lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~ 697 (838)
+.++|.+.|+..+|...++.. +.-+|+|+..|..|+..|...|+..++..-+.++-.
T Consensus 380 ~a~all~~g~~~eai~~L~~~------------------~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 380 LAQALLKGGKPQEAIRILNRY------------------LFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred HHHHHHhcCChHHHHHHHHHH------------------hhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 789999999999999999976 566899999999999999999999999998888754
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.06 Score=61.12 Aligned_cols=227 Identities=8% Similarity=0.018 Sum_probs=117.6
Q ss_pred cCCChhhHHHHHHHHHHhCCC-CChhHHHHHHHHHHhCCChHHHHHHHccCCC---CCcchHHHHHHHHHhCCCchHHHH
Q 046257 90 CLFDHVFGRQVHCECVKSGFA-RDVNVSTSLVDLYMRTNNVEDGRRVFDDMNE---SNVVSWTSLLSGYARNKMNDRVLE 165 (838)
Q Consensus 90 ~~~~~~~a~~~~~~~~~~g~~-~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~ 165 (838)
..+++..|.+-...+.+..+. +-..++.+|+ ..|.|+.++|..+++.... .|..|...+-..|.+.++.++|..
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~~~a~vLkaLs--l~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNALYAKVLKALS--LFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHH--HHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHH
Confidence 445667777776666655321 1122222222 3567788888877776543 356677777777778888888888
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHcCCChhHHHHHHhcCCCCCc
Q 046257 166 LFHRMQVEGIKPNSFTFSTVLGVLADEGIVATAVQVHTMVIKNGGEVVTSVCNALISMYLKSKMVRDARAVFDGMEDRDS 245 (838)
Q Consensus 166 l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~ 245 (838)
+|++..+. -|+..-...++.++.+.+++.+-.++--++.+ .++.+.+.+-++++.+... ...++.
T Consensus 99 ~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs------------~~~~~~ 163 (932)
T KOG2053|consen 99 LYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQS------------IFSENE 163 (932)
T ss_pred HHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHh------------ccCCcc
Confidence 88777653 46666667777777777666554444333333 2345555555555555432 111111
Q ss_pred chHHHHHHHHHhCCChHHHHHHHHHhhhCC-CCCChhhHHHHHHHHhccCcHHHHHHHHH-HHHHhCCCCChhHHHHHHH
Q 046257 246 ITWNSMVAGYVTNELHMEAFETFNNMGLAG-AELTRSTFVSVIKLCATTKELRLARQLHS-QVLKNGIDFDHNIRTGLMV 323 (838)
Q Consensus 246 ~~~n~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~-~~~~~g~~~~~~~~~~Li~ 323 (838)
... .+.- .-|.+.++.+.+.+ -.-+..-...-+......+..++|..++. ...+.-..-+...-+--++
T Consensus 164 ~~~-~i~l--------~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~d 234 (932)
T KOG2053|consen 164 LLD-PILL--------ALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLD 234 (932)
T ss_pred ccc-chhH--------HHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 111 1111 11233334443332 11111111111223334556666666662 2333323334445555666
Q ss_pred HHHcCCChHHHHHHHHhcc
Q 046257 324 AYSKCGKMEDASKIFSMMR 342 (838)
Q Consensus 324 ~y~~~g~~~~A~~~f~~~~ 342 (838)
.+.+++++.+..++-.++.
T Consensus 235 llk~l~~w~~l~~l~~~Ll 253 (932)
T KOG2053|consen 235 LLKLLNRWQELFELSSRLL 253 (932)
T ss_pred HHHHhcChHHHHHHHHHHH
Confidence 7777777776666555544
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0024 Score=66.69 Aligned_cols=219 Identities=12% Similarity=0.089 Sum_probs=136.0
Q ss_pred HHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHH-HHHHhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCC
Q 046257 452 AGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSS-VINACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGN 530 (838)
Q Consensus 452 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~-ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~ 530 (838)
..+...++.++|+.+..++++ +.|+..|.-. --..+..++..++.+......+++...+ +..+|+-..-++.+.|+
T Consensus 45 a~l~~~e~serAL~lt~~aI~--lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~ 121 (320)
T PLN02789 45 AVYASDERSPRALDLTADVIR--LNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGP 121 (320)
T ss_pred HHHHcCCCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCc
Confidence 344556677777777777765 3555543211 1111222212456666666666655432 33345444334445554
Q ss_pred --HHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHhcc---CC----HH
Q 046257 531 --IESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGITFIGVITACTHA---GL----VD 598 (838)
Q Consensus 531 --~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~---g~----~~ 598 (838)
.+++...++++. .+|..+|+.....+...|++++|++.++++++.+.. |...|+.....+.+. |. .+
T Consensus 122 ~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e 200 (320)
T PLN02789 122 DAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRD 200 (320)
T ss_pred hhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHH
Confidence 256677776665 568889999999999999999999999999995433 344555555444443 22 35
Q ss_pred HHHHHHHHHHhcCCccC-CCchHHHHHHHHHhc----CCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHH
Q 046257 599 EGQQYFDIMVNEHHIYP-TMEHYSCMVDLYSRA----GMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYV 673 (838)
Q Consensus 599 ~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~----G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~ 673 (838)
+...+...++.. .| +...|+-+..+|... ++..+|.+++.+. +..+|+++.+..
T Consensus 201 ~el~y~~~aI~~---~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~------------------~~~~~~s~~al~ 259 (320)
T PLN02789 201 SELKYTIDAILA---NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEV------------------LSKDSNHVFALS 259 (320)
T ss_pred HHHHHHHHHHHh---CCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHh------------------hcccCCcHHHHH
Confidence 677777666633 45 445676666677663 3445677777664 456788888899
Q ss_pred HHHHHHHhcC------------------CchHHHHHHHHH
Q 046257 674 LLSNMYAATG------------------HWQERARVRKLM 695 (838)
Q Consensus 674 ~l~~~y~~~g------------------~~~~a~~~~~~m 695 (838)
.|+.+|+... ..++|.++.+.+
T Consensus 260 ~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l 299 (320)
T PLN02789 260 DLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSEL 299 (320)
T ss_pred HHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHH
Confidence 9999998743 235677777766
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.93 E-value=1.5e-05 Score=52.35 Aligned_cols=33 Identities=27% Similarity=0.532 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC
Q 046257 547 VSWNSMICGYAQHGHTKKALEVFKEMRRQDLEF 579 (838)
Q Consensus 547 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 579 (838)
.+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888877
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.0041 Score=60.32 Aligned_cols=170 Identities=12% Similarity=0.107 Sum_probs=123.6
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh
Q 046257 502 FHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQRKRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDG 581 (838)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~ 581 (838)
+.+.+.......+......-...|...|++++|.+..+....-+....|.- .+.+..+.+-|.+.+++|.+ +. +.
T Consensus 95 l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~lE~~Al~Vq--I~lk~~r~d~A~~~lk~mq~--id-ed 169 (299)
T KOG3081|consen 95 LYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENLEAAALNVQ--ILLKMHRFDLAEKELKKMQQ--ID-ED 169 (299)
T ss_pred HHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchHHHHHHHHH--HHHHHHHHHHHHHHHHHHHc--cc-hH
Confidence 444555555455534444445568999999999999988544444444433 34566778999999999988 33 45
Q ss_pred hHHHHHHHHHh----ccCCHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHH
Q 046257 582 ITFIGVITACT----HAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLA 657 (838)
Q Consensus 582 ~t~~~ll~a~~----~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~ 657 (838)
.|.+-|..++. ..+.+.+|.-+|+.|.+++ .|+..+.+-+..+....|+++||+.+++..
T Consensus 170 ~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~--~~T~~llnG~Av~~l~~~~~eeAe~lL~ea-------------- 233 (299)
T KOG3081|consen 170 ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKT--PPTPLLLNGQAVCHLQLGRYEEAESLLEEA-------------- 233 (299)
T ss_pred HHHHHHHHHHHHHhccchhhhhHHHHHHHHhccc--CCChHHHccHHHHHHHhcCHHHHHHHHHHH--------------
Confidence 67776766664 3457999999999998544 688888888888889999999999999987
Q ss_pred HHHHhccCCCCchhHHHHHHHHHhcCCchHHH-HHHHHHh
Q 046257 658 ACRLISLQPHDSAIYVLLSNMYAATGHWQERA-RVRKLMN 696 (838)
Q Consensus 658 ~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~-~~~~~m~ 696 (838)
+.-+|+++.+...+.-.--..|+-.++. +.....+
T Consensus 234 ----L~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk 269 (299)
T KOG3081|consen 234 ----LDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLK 269 (299)
T ss_pred ----HhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 6778888888888877777788876654 3344443
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00026 Score=75.28 Aligned_cols=127 Identities=15% Similarity=0.162 Sum_probs=104.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccC
Q 046257 517 VSSALVTMYSKKGNIESASEVFKRQRKRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITACTHAG 595 (838)
Q Consensus 517 ~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g 595 (838)
...+|+..+...++++.|..+|+++...+...+-.|+..|...++..+|++++++.++. .|+ ...+..-...|...+
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcC
Confidence 34456667778899999999999999766666777888898999999999999999973 554 444555556688999
Q ss_pred CHHHHHHHHHHHHhcCCccCC-CchHHHHHHHHHhcCCHHHHHHHHhhCCCCCC
Q 046257 596 LVDEGQQYFDIMVNEHHIYPT-MEHYSCMVDLYSRAGMLEKAMDIINRMPFAAS 648 (838)
Q Consensus 596 ~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~ 648 (838)
+.+.|+++.+++. ...|+ ..+|..|+..|.+.|++++|+-.++.+|+.+.
T Consensus 249 ~~~lAL~iAk~av---~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~~ 299 (395)
T PF09295_consen 249 KYELALEIAKKAV---ELSPSEFETWYQLAECYIQLGDFENALLALNSCPMLTY 299 (395)
T ss_pred CHHHHHHHHHHHH---HhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCCC
Confidence 9999999999998 34575 56899999999999999999999999996553
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00025 Score=64.42 Aligned_cols=110 Identities=15% Similarity=0.157 Sum_probs=84.0
Q ss_pred HHHHHHHHcCCCCCh-hHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 046257 567 EVFKEMRRQDLEFDG-ITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDIINRMPF 645 (838)
Q Consensus 567 ~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~ 645 (838)
++|++... ..|+. .....+...+...|++++|.+.|+...... +.+...+..+...|.+.|++++|.+.+++.
T Consensus 4 ~~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~~-- 77 (135)
T TIGR02552 4 ATLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD--PYNSRYWLGLAACCQMLKEYEEAIDAYALA-- 77 (135)
T ss_pred hhHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 34566666 56654 345566667778888999998888876432 225567777888888899999999988876
Q ss_pred CCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 046257 646 AASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMNDR 698 (838)
Q Consensus 646 ~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~~ 698 (838)
++++|+++..+..++.+|...|++++|.+.++...+.
T Consensus 78 ----------------~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 78 ----------------AALDPDDPRPYFHAAECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred ----------------HhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 6778888899999999999999999999988877653
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.84 E-value=2.5e-05 Score=51.34 Aligned_cols=34 Identities=35% Similarity=0.628 Sum_probs=30.3
Q ss_pred cchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC
Q 046257 144 VVSWTSLLSGYARNKMNDRVLELFHRMQVEGIKP 177 (838)
Q Consensus 144 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 177 (838)
+.+||.+|.+|++.|+++.|+++|++|++.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3689999999999999999999999999999887
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00041 Score=67.33 Aligned_cols=111 Identities=10% Similarity=0.124 Sum_probs=81.2
Q ss_pred cCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh-hHHHHHHHHH-hccCC--HHHH
Q 046257 528 KGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDG-ITFIGVITAC-THAGL--VDEG 600 (838)
Q Consensus 528 ~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~-~~~g~--~~~a 600 (838)
.++.+++...++... +.|...|..+...|...|++++|+..|++..+ +.|+. ..+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~--l~P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQ--LRGENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 455566665555443 45778888888888888888888888888888 56754 4555666653 56666 4888
Q ss_pred HHHHHHHHhcCCccC-CCchHHHHHHHHHhcCCHHHHHHHHhhC
Q 046257 601 QQYFDIMVNEHHIYP-TMEHYSCMVDLYSRAGMLEKAMDIINRM 643 (838)
Q Consensus 601 ~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~G~~~~A~~~~~~m 643 (838)
.++++...+. .| +...+..+...+.+.|++++|...++++
T Consensus 130 ~~~l~~al~~---dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 130 REMIDKALAL---DANEVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHHHHh---CCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8888888733 34 4567777888888888888888888887
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00053 Score=69.23 Aligned_cols=57 Identities=21% Similarity=0.246 Sum_probs=42.4
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhcCCccC-CCchHHHHHHHHHhcCCHHHHHHHHhhC
Q 046257 587 VITACTHAGLVDEGQQYFDIMVNEHHIYP-TMEHYSCMVDLYSRAGMLEKAMDIINRM 643 (838)
Q Consensus 587 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~G~~~~A~~~~~~m 643 (838)
+...+.+.|++++|...++...+.+.-.| ....+..++.++.+.|++++|.+.++.+
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l 229 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVL 229 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44556778889999998888876543223 2356778888888999999998888765
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.087 Score=56.44 Aligned_cols=140 Identities=13% Similarity=0.186 Sum_probs=107.1
Q ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 046257 500 KQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQRK-----RDLVSWNSMICGYAQHGHTKKALEVFKEMRR 574 (838)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 574 (838)
..++..+++.-...-..+|-.+++.--+..-++.|+.+|.+..+ .++...++++.-|+. ++.+-|..+|+-=+.
T Consensus 351 ~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLk 429 (656)
T KOG1914|consen 351 HEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLK 429 (656)
T ss_pred HHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHH
Confidence 34444444433333345677788888888889999999998872 278889999988875 678899999987665
Q ss_pred cCCCCCh-hHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCC--CchHHHHHHHHHhcCCHHHHHHHHhhC
Q 046257 575 QDLEFDG-ITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPT--MEHYSCMVDLYSRAGMLEKAMDIINRM 643 (838)
Q Consensus 575 ~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~y~~lv~~l~r~G~~~~A~~~~~~m 643 (838)
.-+|. .--...+.-+++.++-..++.+|++.... ++.|+ .+.|..+++-=..-|++.-+.++-+++
T Consensus 430 --kf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s-~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~ 498 (656)
T KOG1914|consen 430 --KFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS-VLSADKSKEIWDRMLEYESNVGDLNSILKLEKRR 498 (656)
T ss_pred --hcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc-cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 24454 44456777888999999999999999865 66665 468999999999999999999988765
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0036 Score=60.84 Aligned_cols=123 Identities=14% Similarity=0.097 Sum_probs=56.3
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHH
Q 046257 515 LCVSSALVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITA 590 (838)
Q Consensus 515 ~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a 590 (838)
..+..+++....+.|++..|...|.+.. ++|...||.+..+|.+.|+.++|..-|.+..+ +.|+ ....+.+...
T Consensus 100 ~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~--L~~~~p~~~nNlgms 177 (257)
T COG5010 100 RELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALE--LAPNEPSIANNLGMS 177 (257)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHH--hccCCchhhhhHHHH
Confidence 3344444444444555555555554433 33444555555555555555555555555554 3443 2334444444
Q ss_pred HhccCCHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHhcCCHHHHHHHHh
Q 046257 591 CTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDIIN 641 (838)
Q Consensus 591 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~ 641 (838)
+.-.|+.+.|..++...... -.-+..+-..++-+.+..|++++|+++..
T Consensus 178 ~~L~gd~~~A~~lll~a~l~--~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 178 LLLRGDLEDAETLLLPAYLS--PAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred HHHcCCHHHHHHHHHHHHhC--CCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 44455555555555444311 11133333444444455555555555443
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.74 E-value=3e-05 Score=49.65 Aligned_cols=31 Identities=48% Similarity=0.895 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCC
Q 046257 547 VSWNSMICGYAQHGHTKKALEVFKEMRRQDL 577 (838)
Q Consensus 547 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 577 (838)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4788999999999999999999999988774
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0015 Score=76.00 Aligned_cols=233 Identities=12% Similarity=0.107 Sum_probs=139.6
Q ss_pred CcchhhHHHHHHHHcCCHHHHHHHHHhcCC--CC-cchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHH
Q 046257 412 SFSVGTALLNAYVKKGILDEAAKVFELIDE--KD-IVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINA 488 (838)
Q Consensus 412 ~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 488 (838)
+...+..|++.|...+++++|.++.+...+ |+ ...|-.+...|.+.++.+++..+ .+.. ..+..
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~--~~~~~--------- 96 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLID--SFSQN--------- 96 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhh--hcccc---------
Confidence 345567899999999999999999986554 33 33444444477777777766655 3322 11111
Q ss_pred hcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHH
Q 046257 489 CTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKA 565 (838)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A 565 (838)
........++..+... ..+...+-.|..+|.+.|+.++|..+++++. ..|+...|.+...|+.. +.++|
T Consensus 97 -----~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA 168 (906)
T PRK14720 97 -----LKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKA 168 (906)
T ss_pred -----cchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHH
Confidence 1112222222222221 2223355567778888888888888888776 44677788888888887 88888
Q ss_pred HHHHHHHHHcCCCCChhHHHHHHH---H-H-hccCCHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHhcCCHHHHHHHH
Q 046257 566 LEVFKEMRRQDLEFDGITFIGVIT---A-C-THAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDII 640 (838)
Q Consensus 566 ~~l~~~m~~~g~~pd~~t~~~ll~---a-~-~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~ 640 (838)
++++.+....-+ |..-|+.+.. - | ...-+++.=.++.+.+....+..--...+--+..-|-...+++++.+++
T Consensus 169 ~~m~~KAV~~~i--~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iL 246 (906)
T PRK14720 169 ITYLKKAIYRFI--KKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYIL 246 (906)
T ss_pred HHHHHHHHHHHH--hhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHH
Confidence 888887766411 1111111111 1 1 1223344444444444433332223344444555666677788888888
Q ss_pred hhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchH
Q 046257 641 NRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQE 687 (838)
Q Consensus 641 ~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~ 687 (838)
+.. ++.+|+|..+..-++..|. +++.+
T Consensus 247 K~i------------------L~~~~~n~~a~~~l~~~y~--~kY~~ 273 (906)
T PRK14720 247 KKI------------------LEHDNKNNKAREELIRFYK--EKYKD 273 (906)
T ss_pred HHH------------------HhcCCcchhhHHHHHHHHH--HHccC
Confidence 876 8889998888888888877 44444
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0014 Score=63.63 Aligned_cols=120 Identities=17% Similarity=0.122 Sum_probs=90.2
Q ss_pred HHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCH
Q 046257 521 LVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGITFIGVITACTHAGLV 597 (838)
Q Consensus 521 li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~ 597 (838)
+-..|--.|+-+.+..+..... ..|....+..+....+.|++.+|+..|++.... -+||..+|+.+.-+|-+.|+.
T Consensus 72 ~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~Gr~ 150 (257)
T COG5010 72 LATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQLGRF 150 (257)
T ss_pred HHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHccCh
Confidence 3444556677777777776644 446566777888888899999999999998883 244567888888889999999
Q ss_pred HHHHHHHHHHHhcCCccC-CCchHHHHHHHHHhcCCHHHHHHHHhhCC
Q 046257 598 DEGQQYFDIMVNEHHIYP-TMEHYSCMVDLYSRAGMLEKAMDIINRMP 644 (838)
Q Consensus 598 ~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~G~~~~A~~~~~~m~ 644 (838)
++|..-|.+..+- .| ++..++.|.-.|.-.|+++.|+.++.+..
T Consensus 151 ~~Ar~ay~qAl~L---~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~ 195 (257)
T COG5010 151 DEARRAYRQALEL---APNEPSIANNLGMSLLLRGDLEDAETLLLPAY 195 (257)
T ss_pred hHHHHHHHHHHHh---ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999888887743 34 34567788888888899999999888763
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.061 Score=54.13 Aligned_cols=214 Identities=13% Similarity=0.104 Sum_probs=135.6
Q ss_pred cchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHH---HHHhcCCChHHHHHHHHHHHHhCCCCchhHH-HH
Q 046257 144 VVSWTSLLSGYARNKMNDRVLELFHRMQVEGIKPNSFTFSTVL---GVLADEGIVATAVQVHTMVIKNGGEVVTSVC-NA 219 (838)
Q Consensus 144 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll---~~~~~~g~~~~a~~l~~~~~~~g~~~~~~~~-~~ 219 (838)
+.-.--+-..+...|++.+|+.-|....+. |+..|-++. ..|...|....|..=+..+++. .||.... --
T Consensus 38 vekhlElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQ 111 (504)
T KOG0624|consen 38 VEKHLELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQ 111 (504)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHH
Confidence 334445667777788888888888877653 444444444 3456677777777777777765 4654321 11
Q ss_pred HHHHhHcCCChhHHHHHHhcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHH
Q 046257 220 LISMYLKSKMVRDARAVFDGMEDRDSITWNSMVAGYVTNELHMEAFETFNNMGLAGAELTRSTFVSVIKLCATTKELRLA 299 (838)
Q Consensus 220 li~~y~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 299 (838)
-...+.+.|.++.|..-|+.+.+.++. -+....++.+.-..++-. .....+..+...|+...+
T Consensus 112 Rg~vllK~Gele~A~~DF~~vl~~~~s-~~~~~eaqskl~~~~e~~----------------~l~~ql~s~~~~GD~~~a 174 (504)
T KOG0624|consen 112 RGVVLLKQGELEQAEADFDQVLQHEPS-NGLVLEAQSKLALIQEHW----------------VLVQQLKSASGSGDCQNA 174 (504)
T ss_pred hchhhhhcccHHHHHHHHHHHHhcCCC-cchhHHHHHHHHhHHHHH----------------HHHHHHHHHhcCCchhhH
Confidence 234566788888888888776543221 111111111111111111 133345556667888888
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHHhccc--CCCeeehHHHHHHHHHcCChHHHHHHHHHhhhcC
Q 046257 300 RQLHSQVLKNGIDFDHNIRTGLMVAYSKCGKMEDASKIFSMMRE--MKDVVSWTAMISGHLQNGAIDLAVNFFCQMTREG 377 (838)
Q Consensus 300 ~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 377 (838)
.....++++.. +.|...+..-..+|...|++..|+.=++.... ..++...-.+-..+.+-|+.+.++...++-.+
T Consensus 175 i~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK-- 251 (504)
T KOG0624|consen 175 IEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK-- 251 (504)
T ss_pred HHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--
Confidence 88888888765 57888888888999999999888765555432 45566666677778888998888888887765
Q ss_pred CCCCcc
Q 046257 378 VRPNGF 383 (838)
Q Consensus 378 ~~pd~~ 383 (838)
+.||.-
T Consensus 252 ldpdHK 257 (504)
T KOG0624|consen 252 LDPDHK 257 (504)
T ss_pred cCcchh
Confidence 456654
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.01 Score=62.14 Aligned_cols=193 Identities=12% Similarity=0.032 Sum_probs=120.5
Q ss_pred cHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcccHHHHHHHhccCC-ChhhHHHHHHHHHHhCCCCChhHHHHHHHHH
Q 046257 45 EYNRLLFEYCRDSLHQEALNLFLGIRRLGLPLFGSTLSSVLKTCGCLF-DHVFGRQVHCECVKSGFARDVNVSTSLVDLY 123 (838)
Q Consensus 45 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 123 (838)
+++.+-..+...+..++|+.++.++.+.. +-+..+|+.--..+...+ +++++...+..+++... .+..+|+..--.+
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np-knyqaW~~R~~~l 116 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP-KNYQIWHHRRWLA 116 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC-cchHHhHHHHHHH
Confidence 34555566677888999999999988753 223334443333444455 57888888888887653 4555677655555
Q ss_pred HhCCCh--HHHHHHHccCCC---CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHHhcC---CCh
Q 046257 124 MRTNNV--EDGRRVFDDMNE---SNVVSWTSLLSGYARNKMNDRVLELFHRMQVEGIKPNSFTFSTVLGVLADE---GIV 195 (838)
Q Consensus 124 ~~~g~~--~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~---g~~ 195 (838)
.+.|.. +++...++.+.+ .|..+|+-..-.+.+.|+++++++.++++.+.++. |...|+.....+.+. |..
T Consensus 117 ~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~ 195 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGL 195 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccc
Confidence 556652 566777766554 56678888888888888899999999998887654 555666555544433 222
Q ss_pred ----HHHHHHHHHHHHhCCCCchhHHHHHHHHhHcC----CChhHHHHHHhcCC
Q 046257 196 ----ATAVQVHTMVIKNGGEVVTSVCNALISMYLKS----KMVRDARAVFDGME 241 (838)
Q Consensus 196 ----~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~----g~~~~A~~~f~~m~ 241 (838)
+...+....+++.. +.|...|+-+...+... +...+|.+.+.+..
T Consensus 196 ~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~ 248 (320)
T PLN02789 196 EAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVL 248 (320)
T ss_pred cccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhh
Confidence 34445555555554 45666777666666652 22344555555443
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.55 E-value=8.8e-05 Score=47.44 Aligned_cols=31 Identities=39% Similarity=0.712 Sum_probs=26.0
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHHHHCCC
Q 046257 145 VSWTSLLSGYARNKMNDRVLELFHRMQVEGI 175 (838)
Q Consensus 145 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 175 (838)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4788888888888888888888888888764
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.28 Score=56.04 Aligned_cols=69 Identities=17% Similarity=0.248 Sum_probs=49.8
Q ss_pred hHHHHHHHHcCCHH---HHHHHHHhcCCC---CcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHH
Q 046257 417 TALLNAYVKKGILD---EAAKVFELIDEK---DIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSV 485 (838)
Q Consensus 417 ~~Li~~y~~~g~~~---~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 485 (838)
+.|++++.+.++.. +|.-+++..... |..+=-.+|..|.-.|-+..|.++|..+.-..++-|...|..+
T Consensus 440 ~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~~~ 514 (932)
T KOG2053|consen 440 NHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHLIF 514 (932)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHHHH
Confidence 67899999998865 344444444333 3334445789999999999999999999877777777665543
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0012 Score=59.64 Aligned_cols=115 Identities=8% Similarity=0.011 Sum_probs=89.3
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhcCCccCC-CchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhcc
Q 046257 586 GVITACTHAGLVDEGQQYFDIMVNEHHIYPT-MEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISL 664 (838)
Q Consensus 586 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l 664 (838)
.+..-+...|++++|.++|+... -+.|. ..-|-.|.-.+-..|++++|.+.+... +.+
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~---~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A------------------~~L 98 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLT---IYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRA------------------AQI 98 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH---HhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHH------------------Hhc
Confidence 44455567888888888888776 23453 345666778888899999999999877 678
Q ss_pred CCCCchhHHHHHHHHHhcCCchHHHHHHHHHhhCCCccCCceeEEEECCEEEEEeeCCCCCCChHHHHHHHHHHHHHHHH
Q 046257 665 QPHDSAIYVLLSNMYAATGHWQERARVRKLMNDRKVKKEAGYSWIEVKNKTYSFLAGDISHPQSNQIYSKLEELSTRLKD 744 (838)
Q Consensus 665 ~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~~~~~s~i~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~~ 744 (838)
+|+|+.+|..++..|...|+.+.|.+-|+...... ..+|+-.+|..+.+.....+.+
T Consensus 99 ~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~-----------------------~~~~~~~~l~~~A~~~L~~l~~ 155 (157)
T PRK15363 99 KIDAPQAPWAAAECYLACDNVCYAIKALKAVVRIC-----------------------GEVSEHQILRQRAEKMLQQLSD 155 (157)
T ss_pred CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHh-----------------------ccChhHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999876531 1467888888888877766643
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0024 Score=58.78 Aligned_cols=123 Identities=15% Similarity=0.248 Sum_probs=82.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh----hHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCC--chHHH
Q 046257 549 WNSMICGYAQHGHTKKALEVFKEMRRQDLEFDG----ITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTM--EHYSC 622 (838)
Q Consensus 549 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~--~~y~~ 622 (838)
|..++..+ ..|+..++.+.++++... .|+. .....+...+...|++++|...|+..... ...|.. .....
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~--~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKD--YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLR 90 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHH
Confidence 44455555 377788888888888874 3433 23334556677788888888888888743 222221 12344
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHH
Q 046257 623 MVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKL 694 (838)
Q Consensus 623 lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~ 694 (838)
+..++...|++++|+..++..+. .|-.+..+.+++++|...|++++|...|+.
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~-------------------~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPD-------------------EAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccC-------------------cchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 67788888888888888876531 122455667888888889999888888765
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.019 Score=67.17 Aligned_cols=151 Identities=11% Similarity=0.076 Sum_probs=81.8
Q ss_pred ChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHcCCChhHHHHHHhcCCCCCcchHHHHHHHHHh
Q 046257 178 NSFTFSTVLGVLADEGIVATAVQVHTMVIKNGGEVVTSVCNALISMYLKSKMVRDARAVFDGMEDRDSITWNSMVAGYVT 257 (838)
Q Consensus 178 ~~~t~~~ll~~~~~~g~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~ 257 (838)
+...+-.+..+|.+.|+.+++.++++++++.. +.|+.+.|.+...|+.. ++++|+.++.+. +..|..
T Consensus 115 ~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KA-----------V~~~i~ 181 (906)
T PRK14720 115 NKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKA-----------IYRFIK 181 (906)
T ss_pred hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHH-----------HHHHHh
Confidence 33455666666667777777777777777766 55667777777777777 777777666443 333555
Q ss_pred CCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHh-CCCCChhHHHHHHHHHHcCCChHHHHH
Q 046257 258 NELHMEAFETFNNMGLAGAELTRSTFVSVIKLCATTKELRLARQLHSQVLKN-GIDFDHNIRTGLMVAYSKCGKMEDASK 336 (838)
Q Consensus 258 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~Li~~y~~~g~~~~A~~ 336 (838)
.+++.++.+++.++... .|+.. +.-.++.+.+... |...-..++-.|-..|-+..+++++..
T Consensus 182 ~kq~~~~~e~W~k~~~~--~~~d~---------------d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~ 244 (906)
T PRK14720 182 KKQYVGIEEIWSKLVHY--NSDDF---------------DFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIY 244 (906)
T ss_pred hhcchHHHHHHHHHHhc--Ccccc---------------hHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHH
Confidence 66667777777666653 22221 1111222222222 222233344445555555566666666
Q ss_pred HHHhccc--CCCeeehHHHHHHHH
Q 046257 337 IFSMMRE--MKDVVSWTAMISGHL 358 (838)
Q Consensus 337 ~f~~~~~--~~~~~~~~~li~~~~ 358 (838)
+|..+.+ +.|.....-++..|.
T Consensus 245 iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 245 ILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHhcCCcchhhHHHHHHHHH
Confidence 6665543 223333444444444
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0018 Score=57.06 Aligned_cols=94 Identities=13% Similarity=0.081 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh----hHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccC-CCchHHH
Q 046257 548 SWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDG----ITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYP-TMEHYSC 622 (838)
Q Consensus 548 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~ 622 (838)
++...+..+...|++++|++.|+++... .|+. ..+..+..++...|++++|.++|+.+...+.-.| ....+..
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKK--YPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 4556667777788888888888888763 3442 3455577777888888888888888774432222 1345666
Q ss_pred HHHHHHhcCCHHHHHHHHhhC
Q 046257 623 MVDLYSRAGMLEKAMDIINRM 643 (838)
Q Consensus 623 lv~~l~r~G~~~~A~~~~~~m 643 (838)
+..++.+.|+.++|.+.++++
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~ 102 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQV 102 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHH
Confidence 777788888888888888876
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0027 Score=57.59 Aligned_cols=94 Identities=14% Similarity=0.185 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCCchHHHHH
Q 046257 546 LVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMV 624 (838)
Q Consensus 546 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv 624 (838)
......+...+.+.|++++|.+.|++.... .|+ ...+..+...+...|++++|..+++...+.. +.+...+..+.
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~la 92 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD--PDDPRPYFHAA 92 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCChHHHHHHH
Confidence 334445556666777777777777777663 343 4455566666667777777777777665321 22345556666
Q ss_pred HHHHhcCCHHHHHHHHhhC
Q 046257 625 DLYSRAGMLEKAMDIINRM 643 (838)
Q Consensus 625 ~~l~r~G~~~~A~~~~~~m 643 (838)
..|...|++++|.+.+++.
T Consensus 93 ~~~~~~g~~~~A~~~~~~a 111 (135)
T TIGR02552 93 ECLLALGEPESALKALDLA 111 (135)
T ss_pred HHHHHcCCHHHHHHHHHHH
Confidence 7777777777777777765
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0037 Score=57.48 Aligned_cols=122 Identities=10% Similarity=0.082 Sum_probs=87.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC--CCH----HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC--hhHHHHHHH
Q 046257 518 SSALVTMYSKKGNIESASEVFKRQRK--RDL----VSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD--GITFIGVIT 589 (838)
Q Consensus 518 ~~~li~~y~k~g~~~~A~~~f~~~~~--~~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd--~~t~~~ll~ 589 (838)
|..++..+ ..++...+...++.+.. |+. ..+-.+...+...|++++|...|++.......|+ ......+..
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~ 93 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLAR 93 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 33344444 47888888888877762 222 2233355778899999999999999999663332 235556778
Q ss_pred HHhccCCHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHhcCCHHHHHHHHhhC
Q 046257 590 ACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDIINRM 643 (838)
Q Consensus 590 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~~m 643 (838)
.+...|++++|+..++... .. ......+....++|.+.|+.++|...+++.
T Consensus 94 ~~~~~~~~d~Al~~L~~~~-~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 94 ILLQQGQYDEALATLQQIP-DE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHcCCHHHHHHHHHhcc-Cc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 8899999999999997643 21 223446677899999999999999999863
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0033 Score=67.06 Aligned_cols=120 Identities=10% Similarity=0.084 Sum_probs=64.0
Q ss_pred HHHHHhCCChHHHHHHHccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHH
Q 046257 120 VDLYMRTNNVEDGRRVFDDMNESNVVSWTSLLSGYARNKMNDRVLELFHRMQVEGIKPNSFTFSTVLGVLADEGIVATAV 199 (838)
Q Consensus 120 i~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~ 199 (838)
+..+...++++.|..+|+++.+.++..+..|++.+...++..+|++++.+..+.. +-|...+..-.+.|.+.++.+.|.
T Consensus 176 l~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~~~lAL 254 (395)
T PF09295_consen 176 LKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKKYELAL 254 (395)
T ss_pred HHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHH
Confidence 3334444666666666666665555555556666655566666666666555432 113333333334455555556666
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHhHcCCChhHHHHHHhcCC
Q 046257 200 QVHTMVIKNGGEVVTSVCNALISMYLKSKMVRDARAVFDGME 241 (838)
Q Consensus 200 ~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~ 241 (838)
.+...+++.. +.+..+|..|...|.+.|+++.|...++.++
T Consensus 255 ~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 255 EIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 6655555553 3333455555555555555555555555554
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.039 Score=53.36 Aligned_cols=180 Identities=14% Similarity=0.148 Sum_probs=124.7
Q ss_pred CCchHHHHHHHHhhc---CC-CCCCHhhHH-HHHHHhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHH
Q 046257 458 GDTEGAVKIYRQLTS---EG-VKPNEFTFS-SVINACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIE 532 (838)
Q Consensus 458 g~~~~A~~l~~~m~~---~g-~~p~~~t~~-~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~ 532 (838)
.++++.++++.++.. .| ..|+..+.. -+.-|.-.. +..+.|+.....+.+.- +.+..+..--.-.+-..|+++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~-~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDT-GRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchh
Confidence 456777777777654 24 555554432 222222222 66777777777665543 444444333333456789999
Q ss_pred HHHHHHHhcCC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 046257 533 SASEVFKRQRK---RDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGITFIGVITACTHAGLVDEGQQYFDIMVN 609 (838)
Q Consensus 533 ~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 609 (838)
+|.++++.+.+ .|.+++---+......|+.-+|++-+.+..+. +..|...|.-+...|...|+++.|.-.+++++
T Consensus 104 ~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l- 181 (289)
T KOG3060|consen 104 EAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL- 181 (289)
T ss_pred hHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH-
Confidence 99999999873 35677777777788889989999999998885 66788999999999999999999999999998
Q ss_pred cCCccCCC-chHHHHHHHHHhcC---CHHHHHHHHhhC
Q 046257 610 EHHIYPTM-EHYSCMVDLYSRAG---MLEKAMDIINRM 643 (838)
Q Consensus 610 ~~~~~p~~-~~y~~lv~~l~r~G---~~~~A~~~~~~m 643 (838)
-+.|.. -.+..+.+.+.-.| +++-|.+.+.+.
T Consensus 182 --l~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~a 217 (289)
T KOG3060|consen 182 --LIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERA 217 (289)
T ss_pred --HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 456644 34566777765544 456677777765
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.41 Score=52.90 Aligned_cols=127 Identities=13% Similarity=0.085 Sum_probs=81.2
Q ss_pred CCChhHHHHHHhcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCC----hhhHHHHHHHHhccCcHHHHHHH
Q 046257 227 SKMVRDARAVFDGMEDRDSITWNSMVAGYVTNELHMEAFETFNNMGLAGAELT----RSTFVSVIKLCATTKELRLARQL 302 (838)
Q Consensus 227 ~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~t~~~ll~~~~~~~~~~~a~~~ 302 (838)
-|++++|++++-+|..+|.. |..+.+.|++-...++++.- |-..| ...|+.+-..++....++.|.+.
T Consensus 747 ~g~feeaek~yld~drrDLA-----ielr~klgDwfrV~qL~r~g---~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~y 818 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRDLA-----IELRKKLGDWFRVYQLIRNG---GSDDDDEGKEDAFRNIGETFAEMMEWEEAAKY 818 (1189)
T ss_pred hcchhHhhhhhhccchhhhh-----HHHHHhhhhHHHHHHHHHcc---CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 38899999999998887753 55666777777666665431 11111 23566666777777777777777
Q ss_pred HHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHHhcccCCCeeehHHHHHHHHHcCChHHHHHHHHH
Q 046257 303 HSQVLKNGIDFDHNIRTGLMVAYSKCGKMEDASKIFSMMREMKDVVSWTAMISGHLQNGAIDLAVNFFCQ 372 (838)
Q Consensus 303 ~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 372 (838)
+..-... ..++.+|.+...+++-+.+-..++ .|......|...+...|..++|.+.|-+
T Consensus 819 Y~~~~~~---------e~~~ecly~le~f~~LE~la~~Lp--e~s~llp~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 819 YSYCGDT---------ENQIECLYRLELFGELEVLARTLP--EDSELLPVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred HHhccch---------HhHHHHHHHHHhhhhHHHHHHhcC--cccchHHHHHHHHHhhchHHHHHHHHHh
Confidence 6543211 234566666666666666666655 3455566777778888888887776644
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.003 Score=67.67 Aligned_cols=103 Identities=14% Similarity=0.106 Sum_probs=64.4
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccC-CCchHHHHHHHHHhc
Q 046257 553 ICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYP-TMEHYSCMVDLYSRA 630 (838)
Q Consensus 553 i~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~ 630 (838)
...+...|++++|+++|++.++ ..|+ ...|..+..++.+.|++++|...++.++. +.| +...|..+..+|.+.
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~--~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~---l~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAID--LDPNNAELYADRAQANIKLGNFTEAVADANKAIE---LDPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCCHHHHHHHHHHHHHh
Confidence 3445566777777777777776 4454 34555666666677777777777766653 234 334556666666777
Q ss_pred CCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHH
Q 046257 631 GMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNM 678 (838)
Q Consensus 631 G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~ 678 (838)
|++++|+..+++. ++++|+++.....+..+
T Consensus 84 g~~~eA~~~~~~a------------------l~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 84 EEYQTAKAALEKG------------------ASLAPGDSRFTKLIKEC 113 (356)
T ss_pred CCHHHHHHHHHHH------------------HHhCCCCHHHHHHHHHH
Confidence 7777777777665 56667666655554433
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.026 Score=54.99 Aligned_cols=151 Identities=16% Similarity=0.149 Sum_probs=85.8
Q ss_pred HHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCchh-HHHHHHHHHHhcCC
Q 046257 452 AGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFHACSIKAKLNNALC-VSSALVTMYSKKGN 530 (838)
Q Consensus 452 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~li~~y~k~g~ 530 (838)
..|+..|++++|++..+.. .++..-.....+++.. ...+.+++....|.+..-+.... ..++.|....-.+.
T Consensus 116 ~i~~~~~~~deAl~~~~~~--~~lE~~Al~VqI~lk~-----~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek 188 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHLG--ENLEAAALNVQILLKM-----HRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEK 188 (299)
T ss_pred HHhhcCCChHHHHHHHhcc--chHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchh
Confidence 4456667777777666541 1121111222222221 44455555444444422111111 22334444444567
Q ss_pred HHHHHHHHHhcCC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHH-HHHHHH
Q 046257 531 IESASEVFKRQRK---RDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGITFIGVITACTHAGLVDEG-QQYFDI 606 (838)
Q Consensus 531 ~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a-~~~~~~ 606 (838)
+.+|.-+|+++.+ |+..+.|.+..++...|++++|..++++.+... .-|+.|...++.+--+.|.-.++ .++..+
T Consensus 189 ~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpetL~Nliv~a~~~Gkd~~~~~r~l~Q 267 (299)
T KOG3081|consen 189 IQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPETLANLIVLALHLGKDAEVTERNLSQ 267 (299)
T ss_pred hhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCCChHHHHHHHHH
Confidence 8888888888874 566777777888888888888888888888753 33456666666666667765444 455556
Q ss_pred HHhc
Q 046257 607 MVNE 610 (838)
Q Consensus 607 m~~~ 610 (838)
.+..
T Consensus 268 Lk~~ 271 (299)
T KOG3081|consen 268 LKLS 271 (299)
T ss_pred HHhc
Confidence 5533
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.00029 Score=57.81 Aligned_cols=47 Identities=11% Similarity=0.220 Sum_probs=19.4
Q ss_pred CChHHHHHHHHHHHHcCCC-CChhHHHHHHHHHhccCCHHHHHHHHHH
Q 046257 560 GHTKKALEVFKEMRRQDLE-FDGITFIGVITACTHAGLVDEGQQYFDI 606 (838)
Q Consensus 560 g~~~~A~~l~~~m~~~g~~-pd~~t~~~ll~a~~~~g~~~~a~~~~~~ 606 (838)
|++++|+.+|+++.+..-. |+...+..+..++.+.|++++|..+++.
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4455555555555542210 1222222344444444444444444443
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0087 Score=64.38 Aligned_cols=182 Identities=12% Similarity=0.153 Sum_probs=81.5
Q ss_pred cCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHcCCChhHHHHHHhcCCC---CCcchHHHHHHHHHhCCChHHHHHH
Q 046257 191 DEGIVATAVQVHTMVIKNGGEVVTSVCNALISMYLKSKMVRDARAVFDGMED---RDSITWNSMVAGYVTNELHMEAFET 267 (838)
Q Consensus 191 ~~g~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~n~li~~~~~~g~~~~A~~l 267 (838)
+.|++.+|.-.|+..++.. +.+...|--|...-+..++-..|+..+.+..+ .|....-+|.-.|...|.-.+|++.
T Consensus 297 ~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~ 375 (579)
T KOG1125|consen 297 KNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKM 375 (579)
T ss_pred hcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHH
Confidence 3444555555555555544 33445555555555555554455544444333 2333334444445555555555555
Q ss_pred HHHhhhCCC------C--CChhhHHHHHHHHhccCcHHHHHHHHHHH-HHhCCCCChhHHHHHHHHHHcCCChHHHHHHH
Q 046257 268 FNNMGLAGA------E--LTRSTFVSVIKLCATTKELRLARQLHSQV-LKNGIDFDHNIRTGLMVAYSKCGKMEDASKIF 338 (838)
Q Consensus 268 ~~~m~~~g~------~--p~~~t~~~ll~~~~~~~~~~~a~~~~~~~-~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f 338 (838)
++.-..... . ++..+-.. +.......+....++|-++ ...+...|..+...|--.|--.|++++|...|
T Consensus 376 L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf 453 (579)
T KOG1125|consen 376 LDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCF 453 (579)
T ss_pred HHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHH
Confidence 544422110 0 00000000 1111112222222332222 22333355555555555555556666666655
Q ss_pred Hhccc--CCCeeehHHHHHHHHHcCChHHHHHHHHHhhh
Q 046257 339 SMMRE--MKDVVSWTAMISGHLQNGAIDLAVNFFCQMTR 375 (838)
Q Consensus 339 ~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 375 (838)
+.... +.|-..||.|...++...+.++|+..|++.++
T Consensus 454 ~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq 492 (579)
T KOG1125|consen 454 EAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ 492 (579)
T ss_pred HHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh
Confidence 55432 22444566665555555556666666655554
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0035 Score=67.16 Aligned_cols=93 Identities=9% Similarity=0.079 Sum_probs=78.7
Q ss_pred HHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccCCH
Q 046257 522 VTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITACTHAGLV 597 (838)
Q Consensus 522 i~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~ 597 (838)
...+...|++++|.+.|++.. +.+...|..+..+|.+.|++++|+..+++.++ +.|+ ...|..+..+|.+.|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~--l~P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIE--LDPSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHhCCH
Confidence 455678899999999999876 44678899999999999999999999999999 6675 56788888999999999
Q ss_pred HHHHHHHHHHHhcCCccCCCch
Q 046257 598 DEGQQYFDIMVNEHHIYPTMEH 619 (838)
Q Consensus 598 ~~a~~~~~~m~~~~~~~p~~~~ 619 (838)
++|...|+...+ +.|+...
T Consensus 87 ~eA~~~~~~al~---l~P~~~~ 105 (356)
T PLN03088 87 QTAKAALEKGAS---LAPGDSR 105 (356)
T ss_pred HHHHHHHHHHHH---hCCCCHH
Confidence 999999999873 4565443
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.39 Score=50.21 Aligned_cols=109 Identities=17% Similarity=0.177 Sum_probs=89.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCH
Q 046257 518 SSALVTMYSKKGNIESASEVFKRQRKRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGITFIGVITACTHAGLV 597 (838)
Q Consensus 518 ~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~ 597 (838)
.+..+.-+...|+...|.++..+..-||..-|...+.+|+..|++++-.++... +-.++-|...+.+|...|..
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~ 253 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNK 253 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCH
Confidence 344455567789999999999999999999999999999999999877665432 22458899999999999999
Q ss_pred HHHHHHHHHHHhcCCccCCCchHHHHHHHHHhcCCHHHHHHHHhhC
Q 046257 598 DEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDIINRM 643 (838)
Q Consensus 598 ~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~~m 643 (838)
++|..+...+ .+..-+.+|.++|++.+|.+.--+.
T Consensus 254 ~eA~~yI~k~-----------~~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 254 KEASKYIPKI-----------PDEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHHHHHHHhC-----------ChHHHHHHHHHCCCHHHHHHHHHHc
Confidence 9999998753 2366789999999999998886554
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0074 Score=57.35 Aligned_cols=85 Identities=13% Similarity=0.198 Sum_probs=53.9
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC--hhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCC-CchHH
Q 046257 545 DLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD--GITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPT-MEHYS 621 (838)
Q Consensus 545 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~ 621 (838)
....+..+...|...|++++|+..|++..+.+..|+ ...+..+...+.+.|++++|..+++...+. .|+ ...+.
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~ 110 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL---NPKQPSALN 110 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHHH
Confidence 344566677777777888888888877776432222 245666667777778888888877777632 332 33455
Q ss_pred HHHHHHHhcCC
Q 046257 622 CMVDLYSRAGM 632 (838)
Q Consensus 622 ~lv~~l~r~G~ 632 (838)
.+..+|...|+
T Consensus 111 ~lg~~~~~~g~ 121 (172)
T PRK02603 111 NIAVIYHKRGE 121 (172)
T ss_pred HHHHHHHHcCC
Confidence 55666666555
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0024 Score=63.26 Aligned_cols=85 Identities=14% Similarity=0.227 Sum_probs=66.7
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCC-CchHHHHHHHHHhcC
Q 046257 554 CGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPT-MEHYSCMVDLYSRAG 631 (838)
Q Consensus 554 ~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~G 631 (838)
.-..+.+++++|+..|.+.++ +.|. .+-|..=..||++.|.++.|++-.+..+ .+.|. ...|..|..+|.-.|
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al---~iDp~yskay~RLG~A~~~~g 163 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESAL---SIDPHYSKAYGRLGLAYLALG 163 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHH---hcChHHHHHHHHHHHHHHccC
Confidence 345677888999999999888 6765 4556677788889999998888887766 34554 357888888888899
Q ss_pred CHHHHHHHHhhC
Q 046257 632 MLEKAMDIINRM 643 (838)
Q Consensus 632 ~~~~A~~~~~~m 643 (838)
++++|.+.|++.
T Consensus 164 k~~~A~~aykKa 175 (304)
T KOG0553|consen 164 KYEEAIEAYKKA 175 (304)
T ss_pred cHHHHHHHHHhh
Confidence 999999998877
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0042 Score=54.72 Aligned_cols=99 Identities=11% Similarity=0.088 Sum_probs=78.9
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCC-CchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHH
Q 046257 583 TFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPT-MEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRL 661 (838)
Q Consensus 583 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~ 661 (838)
++..+...+...|++++|.+.|+.+...+.-.|. ...+..+..++.+.|++++|.+.++++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~------------------ 65 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAV------------------ 65 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHH------------------
Confidence 4556677778899999999999999855322111 235666889999999999999999987
Q ss_pred hccCCCC---chhHHHHHHHHHhcCCchHHHHHHHHHhhCC
Q 046257 662 ISLQPHD---SAIYVLLSNMYAATGHWQERARVRKLMNDRK 699 (838)
Q Consensus 662 ~~l~P~~---~~~y~~l~~~y~~~g~~~~a~~~~~~m~~~g 699 (838)
+...|++ +..+..++.+|...|++++|.+.++.+.+..
T Consensus 66 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 66 VKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHC
Confidence 4555654 5678999999999999999999999997653
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.034 Score=64.42 Aligned_cols=130 Identities=9% Similarity=-0.032 Sum_probs=64.2
Q ss_pred ChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHcCCChhHHHHHHhcCCCC---CcchHHHHHHH
Q 046257 178 NSFTFSTVLGVLADEGIVATAVQVHTMVIKNGGEVVTSVCNALISMYLKSKMVRDARAVFDGMEDR---DSITWNSMVAG 254 (838)
Q Consensus 178 ~~~t~~~ll~~~~~~g~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~---~~~~~n~li~~ 254 (838)
+...+-.|..+....|.+++|..+++.+.+.. +.+......+...+.+.+++++|...+++.... +....+.+..+
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~ 163 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKS 163 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 34444455555555555555555555555442 222334444455555555555555555554432 22233444455
Q ss_pred HHhCCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHh
Q 046257 255 YVTNELHMEAFETFNNMGLAGAELTRSTFVSVIKLCATTKELRLARQLHSQVLKN 309 (838)
Q Consensus 255 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 309 (838)
+.+.|++++|.++|++....+ .-+..++...-.++-..|+.++|...|+..++.
T Consensus 164 l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 164 WDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 555555555555555555421 122345555555555555555555555555543
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.00082 Score=51.92 Aligned_cols=58 Identities=12% Similarity=0.260 Sum_probs=52.3
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 046257 623 MVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMNDR 698 (838)
Q Consensus 623 lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~~ 698 (838)
+...+.+.|++++|++.+++. ++.+|+++.++..++.+|...|++++|..+++...+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~------------------l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQA------------------LKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHH------------------HCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHH------------------HHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 457889999999999999987 7889999999999999999999999999999988653
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0032 Score=52.26 Aligned_cols=92 Identities=16% Similarity=0.224 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCCchHHHHHHH
Q 046257 548 SWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDL 626 (838)
Q Consensus 548 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~ 626 (838)
+|..+...+...|++++|+..|++..+ ..|+ ...+..+...+...|++++|.++|+...... ..+...+..+...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~ 77 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALE--LDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD--PDNAKAYYNLGLA 77 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHh--cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CcchhHHHHHHHH
Confidence 355566667777777777777777766 3343 2445555556666666666666666654221 1122345555566
Q ss_pred HHhcCCHHHHHHHHhhC
Q 046257 627 YSRAGMLEKAMDIINRM 643 (838)
Q Consensus 627 l~r~G~~~~A~~~~~~m 643 (838)
+...|+.++|.+.+++.
T Consensus 78 ~~~~~~~~~a~~~~~~~ 94 (100)
T cd00189 78 YYKLGKYEEALEAYEKA 94 (100)
T ss_pred HHHHHhHHHHHHHHHHH
Confidence 66666666666665543
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0047 Score=51.25 Aligned_cols=89 Identities=17% Similarity=0.275 Sum_probs=74.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhc
Q 046257 518 SSALVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITACTH 593 (838)
Q Consensus 518 ~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~ 593 (838)
+..+...|...|++++|...|+... +.+...|..+...|...|++++|++.|++.... .|+ ..++..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALEL--DPDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCcchhHHHHHHHHHHH
Confidence 4556778889999999999999875 345577888999999999999999999999884 444 4577788888999
Q ss_pred cCCHHHHHHHHHHHH
Q 046257 594 AGLVDEGQQYFDIMV 608 (838)
Q Consensus 594 ~g~~~~a~~~~~~m~ 608 (838)
.|+.++|..++....
T Consensus 81 ~~~~~~a~~~~~~~~ 95 (100)
T cd00189 81 LGKYEEALEAYEKAL 95 (100)
T ss_pred HHhHHHHHHHHHHHH
Confidence 999999999998876
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0052 Score=60.91 Aligned_cols=101 Identities=21% Similarity=0.305 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCCchHHH-HHHHHHhcCCHHHHHHHHhh
Q 046257 564 KALEVFKEMRRQDLEFDGITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSC-MVDLYSRAGMLEKAMDIINR 642 (838)
Q Consensus 564 ~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~-lv~~l~r~G~~~~A~~~~~~ 642 (838)
+...+-++++.+| +-..+.+++.+|...|...+ .+.|+-.+|-| -..+|.+.|.++.|.+-.+.
T Consensus 76 e~~~~AE~LK~eG------------N~~m~~~~Y~eAv~kY~~AI---~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~ 140 (304)
T KOG0553|consen 76 EDKALAESLKNEG------------NKLMKNKDYQEAVDKYTEAI---ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCES 140 (304)
T ss_pred hHHHHHHHHHHHH------------HHHHHhhhHHHHHHHHHHHH---hcCCCcchHHHHHHHHHHHhcchHHHHHHHHH
Confidence 4666667777766 23457899999999999998 45776655544 58899999999999999887
Q ss_pred CCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhh
Q 046257 643 MPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMND 697 (838)
Q Consensus 643 m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~ 697 (838)
. +.+||....+|..|+.+|...|++++|.+.|++..+
T Consensus 141 A------------------l~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLe 177 (304)
T KOG0553|consen 141 A------------------LSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALE 177 (304)
T ss_pred H------------------HhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhc
Confidence 7 899999999999999999999999999999887654
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.00086 Score=52.33 Aligned_cols=53 Identities=15% Similarity=0.413 Sum_probs=47.7
Q ss_pred HHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhh
Q 046257 627 YSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMND 697 (838)
Q Consensus 627 l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~ 697 (838)
+...|++++|.+.++++ ++.+|+++.++..|+.+|.+.|++++|..+++.+..
T Consensus 1 ll~~~~~~~A~~~~~~~------------------l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKA------------------LQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HHHTTHHHHHHHHHHHH------------------HHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred ChhccCHHHHHHHHHHH------------------HHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 35689999999999987 788999999999999999999999999999998765
|
... |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.009 Score=54.10 Aligned_cols=90 Identities=9% Similarity=0.041 Sum_probs=73.4
Q ss_pred HHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccCC
Q 046257 521 LVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITACTHAGL 596 (838)
Q Consensus 521 li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~ 596 (838)
+..-+...|++++|.++|+-+. .-+..-|-.|...+-..|++++|+..|..... +.|| ..++-.+..++...|+
T Consensus 41 ~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~--L~~ddp~~~~~ag~c~L~lG~ 118 (157)
T PRK15363 41 YAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQ--IKIDAPQAPWAAAECYLACDN 118 (157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCchHHHHHHHHHHHcCC
Confidence 3444567899999999998765 44667888999999999999999999999998 5565 5677788888899999
Q ss_pred HHHHHHHHHHHHhcCC
Q 046257 597 VDEGQQYFDIMVNEHH 612 (838)
Q Consensus 597 ~~~a~~~~~~m~~~~~ 612 (838)
.+.|++.|+..+...+
T Consensus 119 ~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 119 VCYAIKALKAVVRICG 134 (157)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999998875443
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.00099 Score=52.18 Aligned_cols=63 Identities=21% Similarity=0.354 Sum_probs=57.0
Q ss_pred CchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcC-CchHHHHHHHHH
Q 046257 617 MEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATG-HWQERARVRKLM 695 (838)
Q Consensus 617 ~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g-~~~~a~~~~~~m 695 (838)
...|..+...+.+.|++++|++.|++. ++++|+++.+|..++.+|...| ++++|.+.+++.
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~a------------------i~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~a 64 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKA------------------IELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKA 64 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHH------------------HHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH------------------HHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 456778889999999999999999987 8899999999999999999999 799999998876
Q ss_pred hh
Q 046257 696 ND 697 (838)
Q Consensus 696 ~~ 697 (838)
.+
T Consensus 65 l~ 66 (69)
T PF13414_consen 65 LK 66 (69)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
... |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.02 Score=64.18 Aligned_cols=136 Identities=17% Similarity=0.079 Sum_probs=91.0
Q ss_pred CCCCHHHHHHHHHHHHHc--C---ChHHHHHHHHHHHHcCCCCCh-hHHHHHHHHHhcc--------CCHHHHHHHHHHH
Q 046257 542 RKRDLVSWNSMICGYAQH--G---HTKKALEVFKEMRRQDLEFDG-ITFIGVITACTHA--------GLVDEGQQYFDIM 607 (838)
Q Consensus 542 ~~~~~~~~~~li~~~~~~--g---~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~--------g~~~~a~~~~~~m 607 (838)
...|...|...+.|.... + +.++|+++|++..+ ..||. ..+..+..++... +.+..+.+.....
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 356778888888775432 2 26689999999998 68884 3444433333211 1233444444433
Q ss_pred HhcCCccCCCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchH
Q 046257 608 VNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQE 687 (838)
Q Consensus 608 ~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~ 687 (838)
........+...|..+.-.....|++++|...++++ ++++| +..+|+.++.+|...|+.++
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rA------------------l~L~p-s~~a~~~lG~~~~~~G~~~e 471 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKA------------------IDLEM-SWLNYVLLGKVYELKGDNRL 471 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHH------------------HHcCC-CHHHHHHHHHHHHHcCCHHH
Confidence 211112234456777766666789999999999987 78888 67889999999999999999
Q ss_pred HHHHHHHHhhC
Q 046257 688 RARVRKLMNDR 698 (838)
Q Consensus 688 a~~~~~~m~~~ 698 (838)
|...+++....
T Consensus 472 A~~~~~~A~~L 482 (517)
T PRK10153 472 AADAYSTAFNL 482 (517)
T ss_pred HHHHHHHHHhc
Confidence 99988877553
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.4 Score=49.67 Aligned_cols=97 Identities=14% Similarity=0.222 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-----h-hHHHHHHHHHhccCCHHHHHHHHHHHHhcC-CccCCCc--
Q 046257 548 SWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD-----G-ITFIGVITACTHAGLVDEGQQYFDIMVNEH-HIYPTME-- 618 (838)
Q Consensus 548 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-----~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-~~~p~~~-- 618 (838)
++..+...+.+.|++++|+++|++....-...+ . ..|...+-.+...|++..|.+.|+...... ++..+.+
T Consensus 157 ~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~ 236 (282)
T PF14938_consen 157 CLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYK 236 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHH
Confidence 355567788888999999999998876432221 1 123344445666788999999998876321 2222221
Q ss_pred hHHHHHHHHH--hcCCHHHHHHHHhhCC
Q 046257 619 HYSCMVDLYS--RAGMLEKAMDIINRMP 644 (838)
Q Consensus 619 ~y~~lv~~l~--r~G~~~~A~~~~~~m~ 644 (838)
....|++++- ....+++|..-++++.
T Consensus 237 ~~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 237 FLEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 2344455553 2445777888888773
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0097 Score=56.54 Aligned_cols=98 Identities=13% Similarity=0.164 Sum_probs=76.1
Q ss_pred hHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCC-CchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 046257 582 ITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPT-MEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACR 660 (838)
Q Consensus 582 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~ 660 (838)
..+..+...+...|++++|..+|+...+...-.++ ...+..+..++.+.|++++|.+.+++.
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a----------------- 98 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQA----------------- 98 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHH-----------------
Confidence 45777778888999999999999998743211111 246778889999999999999999987
Q ss_pred HhccCCCCchhHHHHHHHHHhcCC--------------chHHHHHHHHHhh
Q 046257 661 LISLQPHDSAIYVLLSNMYAATGH--------------WQERARVRKLMND 697 (838)
Q Consensus 661 ~~~l~P~~~~~y~~l~~~y~~~g~--------------~~~a~~~~~~m~~ 697 (838)
++..|+++..+..++.+|...|+ +++|.++++....
T Consensus 99 -l~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~ 148 (172)
T PRK02603 99 -LELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIR 148 (172)
T ss_pred -HHhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHh
Confidence 67789899999999999988887 4556665555543
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.083 Score=57.49 Aligned_cols=54 Identities=11% Similarity=-0.014 Sum_probs=28.2
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHH
Q 046257 545 DLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGITFIGVITACTHAGLVDEGQQYFDIM 607 (838)
Q Consensus 545 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m 607 (838)
+..+...+..-+.+...+.-|-++|+.|-+. ..++......+++++|..+-++.
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~h 799 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKH 799 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhC
Confidence 3333333333344444555566666665431 23455556666777776665543
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.041 Score=52.03 Aligned_cols=95 Identities=14% Similarity=0.125 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC--hhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCC-CchHHH
Q 046257 546 LVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD--GITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPT-MEHYSC 622 (838)
Q Consensus 546 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~ 622 (838)
...|..+...+...|++++|+..|++.......|. ..++..+...+.+.|+.++|..+++..... .|+ ...+..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~---~~~~~~~~~~ 111 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER---NPFLPQALNN 111 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCcHHHHHH
Confidence 45677788888888999999999998887432222 246777888888899999999999887733 343 344555
Q ss_pred HHHHHH-------hcCCHHHHHHHHhhC
Q 046257 623 MVDLYS-------RAGMLEKAMDIINRM 643 (838)
Q Consensus 623 lv~~l~-------r~G~~~~A~~~~~~m 643 (838)
+...+. +.|++++|...+++.
T Consensus 112 la~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 112 MAVICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 666666 888888777777654
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0026 Score=52.10 Aligned_cols=76 Identities=16% Similarity=0.226 Sum_probs=57.3
Q ss_pred cCCHHHHHHHHHhcC--CC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh-hHHHHHHHHHhccCCHHHHH
Q 046257 528 KGNIESASEVFKRQR--KR---DLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDG-ITFIGVITACTHAGLVDEGQ 601 (838)
Q Consensus 528 ~g~~~~A~~~f~~~~--~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~ 601 (838)
.|+++.|..+|+++. .| +...|..+..+|.+.|++++|++++++ .+ ..|+. .....+..+|...|++++|.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~--~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK--LDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT--HHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC--CCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 588999999999886 33 345666789999999999999999999 33 44544 33334467788999999999
Q ss_pred HHHHH
Q 046257 602 QYFDI 606 (838)
Q Consensus 602 ~~~~~ 606 (838)
++++.
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 98875
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0036 Score=48.74 Aligned_cols=48 Identities=19% Similarity=0.377 Sum_probs=30.3
Q ss_pred ccCCHHHHHHHHHHHHhcCCccC-CCchHHHHHHHHHhcCCHHHHHHHHhhC
Q 046257 593 HAGLVDEGQQYFDIMVNEHHIYP-TMEHYSCMVDLYSRAGMLEKAMDIINRM 643 (838)
Q Consensus 593 ~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~G~~~~A~~~~~~m 643 (838)
..|++++|.++|+.+... .| +...+..++.+|.+.|++++|.++++++
T Consensus 3 ~~~~~~~A~~~~~~~l~~---~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~ 51 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR---NPDNPEARLLLAQCYLKQGQYDEAEELLERL 51 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH---TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCC
T ss_pred hccCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 456666777777666533 23 4455556677777777777777777776
|
... |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.16 Score=49.38 Aligned_cols=163 Identities=14% Similarity=0.199 Sum_probs=117.6
Q ss_pred CCCchhH-HHHHHHHHHhcCCHHHHHHHHHhcCC--C---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHH
Q 046257 511 LNNALCV-SSALVTMYSKKGNIESASEVFKRQRK--R---DLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGITF 584 (838)
Q Consensus 511 ~~~~~~~-~~~li~~y~k~g~~~~A~~~f~~~~~--~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~ 584 (838)
..++..+ +.-+.=+...+|+.+.|...++.+.. | -+.-..+| -+-..|++++|+++|+..++.+ +.|.+++
T Consensus 47 ~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam--~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~ 123 (289)
T KOG3060|consen 47 LGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAM--LLEATGNYKEAIEYYESLLEDD-PTDTVIR 123 (289)
T ss_pred cCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHH--HHHHhhchhhHHHHHHHHhccC-cchhHHH
Confidence 4455433 33344455678999999999988762 2 22222222 3456789999999999999965 3456777
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhcc
Q 046257 585 IGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISL 664 (838)
Q Consensus 585 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l 664 (838)
.-=+...-..|+--+|.+-+....+. +..|.+.|.-+.++|...|++++|.=-++++ +-+
T Consensus 124 KRKlAilka~GK~l~aIk~ln~YL~~--F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~------------------ll~ 183 (289)
T KOG3060|consen 124 KRKLAILKAQGKNLEAIKELNEYLDK--FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL------------------LLI 183 (289)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH------------------HHc
Confidence 76666666677777888877777644 4568889999999999999999999989988 567
Q ss_pred CCCCchhHHHHHHHHHhcCCch---HHHHHHHHHh
Q 046257 665 QPHDSAIYVLLSNMYAATGHWQ---ERARVRKLMN 696 (838)
Q Consensus 665 ~P~~~~~y~~l~~~y~~~g~~~---~a~~~~~~m~ 696 (838)
+|-++-.+..++.++...|-.+ -|.+.+....
T Consensus 184 ~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~al 218 (289)
T KOG3060|consen 184 QPFNPLYFQRLAEVLYTQGGAENLELARKYYERAL 218 (289)
T ss_pred CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 8889999999999988877644 3444444443
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.039 Score=61.88 Aligned_cols=121 Identities=12% Similarity=0.121 Sum_probs=81.4
Q ss_pred CHHHHHHHHHhcC--CCC-HHHHHHHHHHHHHcC--------ChHHHHHHHHHHHHcC-CCCChhHHHHHHHHHhccCCH
Q 046257 530 NIESASEVFKRQR--KRD-LVSWNSMICGYAQHG--------HTKKALEVFKEMRRQD-LEFDGITFIGVITACTHAGLV 597 (838)
Q Consensus 530 ~~~~A~~~f~~~~--~~~-~~~~~~li~~~~~~g--------~~~~A~~l~~~m~~~g-~~pd~~t~~~ll~a~~~~g~~ 597 (838)
+.+.|..+|++.. +|+ ...|..+..+|.... +..++.+..++..... ...+...|..+.-.....|++
T Consensus 357 ~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~ 436 (517)
T PRK10153 357 SLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKT 436 (517)
T ss_pred HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCH
Confidence 3667788887776 343 344544444333221 1234444444444421 223446677776666678999
Q ss_pred HHHHHHHHHHHhcCCccCCCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchh
Q 046257 598 DEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAI 671 (838)
Q Consensus 598 ~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~ 671 (838)
++|...++++.. +.|+...|..+...+...|+.++|.+.+++. +.++|.++..
T Consensus 437 ~~A~~~l~rAl~---L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A------------------~~L~P~~pt~ 489 (517)
T PRK10153 437 DEAYQAINKAID---LEMSWLNYVLLGKVYELKGDNRLAADAYSTA------------------FNLRPGENTL 489 (517)
T ss_pred HHHHHHHHHHHH---cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH------------------HhcCCCCchH
Confidence 999999999883 4578888999999999999999999999987 6778876653
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.011 Score=60.93 Aligned_cols=253 Identities=17% Similarity=0.135 Sum_probs=151.3
Q ss_pred HHHHHcCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCchHHHHHHHHhhcC--C-----CCCCH--hhHHHHHHH
Q 046257 421 NAYVKKGILDEAAKVFELIDE---KDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSE--G-----VKPNE--FTFSSVINA 488 (838)
Q Consensus 421 ~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g-----~~p~~--~t~~~ll~a 488 (838)
..+.+..++.+|+..+....+ .+..-|..-...|...|++++|+--.++-.+. | .+|+. .....++.+
T Consensus 57 n~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A 136 (486)
T KOG0550|consen 57 NAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEA 136 (486)
T ss_pred chHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHH
Confidence 344556666666666654332 34555666677777777777776655444331 1 11111 112223333
Q ss_pred hcCChhhHHHHHHH-----HHHHHHhcC-CCchhHHHHH-HHHHHhcCCHHHHHHHHHhcCCCCHH-HHHHHHH--HHHH
Q 046257 489 CTAPSAAVEQGKQF-----HACSIKAKL-NNALCVSSAL-VTMYSKKGNIESASEVFKRQRKRDLV-SWNSMIC--GYAQ 558 (838)
Q Consensus 489 ~~~~~~~~~~~~~~-----~~~~~~~~~-~~~~~~~~~l-i~~y~k~g~~~~A~~~f~~~~~~~~~-~~~~li~--~~~~ 558 (838)
+... .+....+.. ...+..... +|....+.-| ...+.-.|++++|.++--.+.+-|.. .+...+. ++-.
T Consensus 137 ~~~~-~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy 215 (486)
T KOG0550|consen 137 EEKL-KSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYY 215 (486)
T ss_pred HHHh-hhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhccccccc
Confidence 3222 111111000 000111111 1222233222 34566678888888876665543332 2233333 4456
Q ss_pred cCChHHHHHHHHHHHHcCCCCChhHHHHH-------------HHHHhccCCHHHHHHHHHHHHhcCCccCC-----CchH
Q 046257 559 HGHTKKALEVFKEMRRQDLEFDGITFIGV-------------ITACTHAGLVDEGQQYFDIMVNEHHIYPT-----MEHY 620 (838)
Q Consensus 559 ~g~~~~A~~l~~~m~~~g~~pd~~t~~~l-------------l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~y 620 (838)
.++.++|+..|++.+. +.||+..--.. .+-..+.|.+..|.+.+...+ ++.|+ ...|
T Consensus 216 ~~~~~ka~~hf~qal~--ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal---~idP~n~~~naklY 290 (486)
T KOG0550|consen 216 NDNADKAINHFQQALR--LDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEAL---NIDPSNKKTNAKLY 290 (486)
T ss_pred ccchHHHHHHHhhhhc--cChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhh---cCCccccchhHHHH
Confidence 7889999999999988 67886432221 122357889999999998876 45554 3346
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhh
Q 046257 621 SCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMND 697 (838)
Q Consensus 621 ~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~ 697 (838)
........|.|++++|+.--+.. ++++|.-..+|..-++.|...++|++|.+-+++.-+
T Consensus 291 ~nra~v~~rLgrl~eaisdc~~A------------------l~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q 349 (486)
T KOG0550|consen 291 GNRALVNIRLGRLREAISDCNEA------------------LKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQ 349 (486)
T ss_pred HHhHhhhcccCCchhhhhhhhhh------------------hhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55666777899999999888776 788888888899999999999999999999988765
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.66 E-value=1.1 Score=47.17 Aligned_cols=86 Identities=8% Similarity=0.123 Sum_probs=58.3
Q ss_pred HHHccCCC-C-CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCC
Q 046257 134 RVFDDMNE-S-NVVSWTSLLSGYARNKMNDRVLELFHRMQVEGIKPNSFTFSTVLGVLADEGIVATAVQVHTMVIKNGGE 211 (838)
Q Consensus 134 ~~f~~m~~-~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~l~~~~~~~g~~ 211 (838)
++=+++.+ | |..+|-.||.-|..+|..++..+++++|..- ++--...|..-+++-....+++..+.+|.+.++..+.
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~ 108 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLN 108 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhcc
Confidence 55555554 3 5678999999999999999999999888642 2223445666666655667888888888888776543
Q ss_pred CchhHHHHHHH
Q 046257 212 VVTSVCNALIS 222 (838)
Q Consensus 212 ~~~~~~~~li~ 222 (838)
...|...+.
T Consensus 109 --ldLW~lYl~ 117 (660)
T COG5107 109 --LDLWMLYLE 117 (660)
T ss_pred --HhHHHHHHH
Confidence 445554444
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.042 Score=56.67 Aligned_cols=133 Identities=12% Similarity=0.171 Sum_probs=72.4
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHhhcCC-CCCCHhhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 046257 447 WSAMLAGYAQIGDTEGAVKIYRQLTSEG-VKPNEFTFSSVINACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMY 525 (838)
Q Consensus 447 ~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y 525 (838)
|-.++...-+.+..+.|..+|.+.++.+ ...+.....+.+.-+.. ++.+.|..+++..++. +..+...+...++.+
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~--~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCN--KDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTC--S-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 4444444444444555555555554322 12222222222322211 3444455555555543 455666777777778
Q ss_pred HhcCCHHHHHHHHHhcCC--C----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHH
Q 046257 526 SKKGNIESASEVFKRQRK--R----DLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGITF 584 (838)
Q Consensus 526 ~k~g~~~~A~~~f~~~~~--~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~ 584 (838)
.+.|+.+.|+.+|++... + -...|...+.-=.+.|+.+.+.++.+++.+ .-|+..++
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~--~~~~~~~~ 143 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE--LFPEDNSL 143 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH--HTTTS-HH
T ss_pred HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HhhhhhHH
Confidence 888888888888877652 1 234788888777778888888888877777 45553333
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.22 Score=54.38 Aligned_cols=39 Identities=18% Similarity=0.321 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHH
Q 046257 162 RVLELFHRMQVEGIKPNSFTFSTVLGVLADEGIVATAVQVHT 203 (838)
Q Consensus 162 ~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~l~~ 203 (838)
+.+.-+++|+++|-.|+.... ...|+-.|.+.+|.++|.
T Consensus 618 ~li~EL~~~k~rge~P~~iLl---A~~~Ay~gKF~EAAklFk 656 (1081)
T KOG1538|consen 618 ELISELEERKKRGETPNDLLL---ADVFAYQGKFHEAAKLFK 656 (1081)
T ss_pred HHHHHHHHHHhcCCCchHHHH---HHHHHhhhhHHHHHHHHH
Confidence 344445667777766766433 334555666666666654
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.012 Score=55.64 Aligned_cols=96 Identities=9% Similarity=-0.048 Sum_probs=73.9
Q ss_pred hHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccC-CCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 046257 582 ITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYP-TMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACR 660 (838)
Q Consensus 582 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~ 660 (838)
..+..+...+...|++++|...|+.......-.+ ....|..+..+|.+.|++++|++.+++.
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~A----------------- 98 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQA----------------- 98 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHH-----------------
Confidence 4566677777788999999999999874321111 1236788899999999999999999987
Q ss_pred HhccCCCCchhHHHHHHHHH-------hcCCchHHHHHHHHH
Q 046257 661 LISLQPHDSAIYVLLSNMYA-------ATGHWQERARVRKLM 695 (838)
Q Consensus 661 ~~~l~P~~~~~y~~l~~~y~-------~~g~~~~a~~~~~~m 695 (838)
++++|.....+..++.+|. ..|++++|...+++.
T Consensus 99 -l~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 99 -LERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred -HHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 6778888888888888888 888888666655543
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.061 Score=52.19 Aligned_cols=164 Identities=9% Similarity=0.039 Sum_probs=117.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCC--CH--------HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHH
Q 046257 518 SSALVTMYSKKGNIESASEVFKRQRKR--DL--------VSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGITFIGV 587 (838)
Q Consensus 518 ~~~li~~y~k~g~~~~A~~~f~~~~~~--~~--------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~l 587 (838)
+++|...|.-...+++-...|+.-..| .+ ..-+.++..+.-+|.+.-.+.++++.++..-.-+..-...|
T Consensus 139 qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~L 218 (366)
T KOG2796|consen 139 QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGL 218 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHH
Confidence 455666665555555555555544322 22 23456777777788888899999999996545567778888
Q ss_pred HHHHhccCCHHHHHHHHHHHHhcCCccCCCchHHH-----HHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHh
Q 046257 588 ITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSC-----MVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLI 662 (838)
Q Consensus 588 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~-----lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~ 662 (838)
.+.-.+.|+++.|..+|+...+..+. -+-...+. +.-.|.-++++.+|...+.+. +
T Consensus 219 gr~~MQ~GD~k~a~~yf~~vek~~~k-L~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i------------------~ 279 (366)
T KOG2796|consen 219 GRISMQIGDIKTAEKYFQDVEKVTQK-LDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEI------------------L 279 (366)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhh-hhccchhHHHHhhhhhheecccchHHHHHHHhhc------------------c
Confidence 88889999999999999977655433 22223333 334556677888999999888 4
Q ss_pred ccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhhCCC
Q 046257 663 SLQPHDSAIYVLLSNMYAATGHWQERARVRKLMNDRKV 700 (838)
Q Consensus 663 ~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~~g~ 700 (838)
+.||.++.+-..-+-+..-.|+..||.+..+.|+++-.
T Consensus 280 ~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P 317 (366)
T KOG2796|consen 280 RMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDP 317 (366)
T ss_pred ccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 67788887777777777778999999999999987643
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.026 Score=47.44 Aligned_cols=80 Identities=16% Similarity=0.216 Sum_probs=65.7
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHCCC-CCChhhHHHHHHHHhcCC--------ChHHHHHHHHHHHHhCCCCchhHH
Q 046257 147 WTSLLSGYARNKMNDRVLELFHRMQVEGI-KPNSFTFSTVLGVLADEG--------IVATAVQVHTMVIKNGGEVVTSVC 217 (838)
Q Consensus 147 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~~~~~~g--------~~~~a~~l~~~~~~~g~~~~~~~~ 217 (838)
-...|.-+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. .+-....+|+.++..++.|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34456666677999999999999999999 899999999999987653 234567788899999999999999
Q ss_pred HHHHHHhHc
Q 046257 218 NALISMYLK 226 (838)
Q Consensus 218 ~~li~~y~~ 226 (838)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 998887764
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.016 Score=55.06 Aligned_cols=98 Identities=15% Similarity=0.287 Sum_probs=78.8
Q ss_pred HHHHHHhc--CCCCHHHHHHHHHHHHHc-----CChHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccC-----------
Q 046257 534 ASEVFKRQ--RKRDLVSWNSMICGYAQH-----GHTKKALEVFKEMRRQDLEFDGITFIGVITACTHAG----------- 595 (838)
Q Consensus 534 A~~~f~~~--~~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g----------- 595 (838)
-...|+.. ..+|..+|..++..|.+. |..+=....++.|.+-|+.-|-.+|+.||+.+=+..
T Consensus 33 ~~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F 112 (228)
T PF06239_consen 33 HEELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEF 112 (228)
T ss_pred hHHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHh
Confidence 34566665 467888888888888754 677777788889999999999999999988765422
Q ss_pred -----CHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHhcCC
Q 046257 596 -----LVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGM 632 (838)
Q Consensus 596 -----~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~ 632 (838)
+.+-|.+++++|. .+|+.||.+++..+++.+|+.+.
T Consensus 113 ~hyp~Qq~c~i~lL~qME-~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 113 MHYPRQQECAIDLLEQME-NNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred ccCcHHHHHHHHHHHHHH-HcCCCCcHHHHHHHHHHhccccH
Confidence 3467899999997 88999999999999999998775
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.038 Score=48.30 Aligned_cols=90 Identities=12% Similarity=0.163 Sum_probs=69.9
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCC--hhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCC---Cc-hHHHHH
Q 046257 551 SMICGYAQHGHTKKALEVFKEMRRQDLEFD--GITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPT---ME-HYSCMV 624 (838)
Q Consensus 551 ~li~~~~~~g~~~~A~~l~~~m~~~g~~pd--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~-~y~~lv 624 (838)
.+..++-..|+.++|+.+|++..+.|+... ...+..+.+++...|++++|..+++.....+ |+ .. ....+.
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~---p~~~~~~~l~~f~A 82 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF---PDDELNAALRVFLA 82 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---CCccccHHHHHHHH
Confidence 355678889999999999999999887765 3467788889999999999999999888654 44 22 222334
Q ss_pred HHHHhcCCHHHHHHHHhhC
Q 046257 625 DLYSRAGMLEKAMDIINRM 643 (838)
Q Consensus 625 ~~l~r~G~~~~A~~~~~~m 643 (838)
-.+...|+.+||.+.+-..
T Consensus 83 l~L~~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 83 LALYNLGRPKEALEWLLEA 101 (120)
T ss_pred HHHHHCCCHHHHHHHHHHH
Confidence 5778899999999887643
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.16 Score=51.07 Aligned_cols=150 Identities=15% Similarity=0.166 Sum_probs=98.5
Q ss_pred HHHhcCCHHHHHHHHHhcC--CCC-HHH---HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh--hHHHHHHHHHhc--
Q 046257 524 MYSKKGNIESASEVFKRQR--KRD-LVS---WNSMICGYAQHGHTKKALEVFKEMRRQDLEFDG--ITFIGVITACTH-- 593 (838)
Q Consensus 524 ~y~k~g~~~~A~~~f~~~~--~~~-~~~---~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~--~t~~~ll~a~~~-- 593 (838)
.+.+.|++++|.+.|+.+. .|+ ... .-.++.+|.+.+++++|+..|++..+ ..|++ +.+.....+.++
T Consensus 41 ~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~--~~P~~~~~~~a~Y~~g~~~~~ 118 (243)
T PRK10866 41 QKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIR--LNPTHPNIDYVLYMRGLTNMA 118 (243)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCcCCCchHHHHHHHHHhhhh
Confidence 3566799999999998886 232 222 23456778889999999999999988 56653 344444444332
Q ss_pred cC---------------C---HHHHHHHHHHHHhcCCccCCCchH------------------HHHHHHHHhcCCHHHHH
Q 046257 594 AG---------------L---VDEGQQYFDIMVNEHHIYPTMEHY------------------SCMVDLYSRAGMLEKAM 637 (838)
Q Consensus 594 ~g---------------~---~~~a~~~~~~m~~~~~~~p~~~~y------------------~~lv~~l~r~G~~~~A~ 637 (838)
.+ + ..+|.+.|+..++.+ |+.... -.+.+.|.+.|.+.-|.
T Consensus 119 ~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y---P~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~ 195 (243)
T PRK10866 119 LDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY---PNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVV 195 (243)
T ss_pred cchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC---cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHH
Confidence 11 1 346677888887665 443321 12345566777776665
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHHhcc---CCCCchhHHHHHHHHHhcCCchHHHHHHHHHh
Q 046257 638 DIINRMPFAASATVWRTVLAACRLISL---QPHDSAIYVLLSNMYAATGHWQERARVRKLMN 696 (838)
Q Consensus 638 ~~~~~m~~~~~~~~w~~ll~~c~~~~l---~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~ 696 (838)
.-++.+ ++- .|..+.+...+.+.|...|..++|..+.+...
T Consensus 196 ~r~~~v------------------~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 196 NRVEQM------------------LRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHH------------------HHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 555544 222 23466778899999999999999999887664
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.021 Score=61.25 Aligned_cols=117 Identities=16% Similarity=0.167 Sum_probs=79.5
Q ss_pred CChhHHHHHHHHHHhCCChHHHHHHHccCCC-CC-----cchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHH
Q 046257 111 RDVNVSTSLVDLYMRTNNVEDGRRVFDDMNE-SN-----VVSWTSLLSGYARNKMNDRVLELFHRMQVEGIKPNSFTFST 184 (838)
Q Consensus 111 ~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~-~~-----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 184 (838)
.+......+++......+++++..++-+... |+ ..|..++|+.|.+.|..+.++.++..=...|+-||.+||+.
T Consensus 64 vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~ 143 (429)
T PF10037_consen 64 VSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNL 143 (429)
T ss_pred CcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHH
Confidence 3444444455555555566666666655443 11 23456788888888888888888888888888888888888
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHcC
Q 046257 185 VLGVLADEGIVATAVQVHTMVIKNGGEVVTSVCNALISMYLKS 227 (838)
Q Consensus 185 ll~~~~~~g~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~ 227 (838)
||+.+.+.|++..|.++...|...+...+..++.--+..+.+.
T Consensus 144 Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 144 LMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 8888888888888888888887777655655555444444444
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.0053 Score=48.62 Aligned_cols=58 Identities=16% Similarity=0.331 Sum_probs=53.1
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhhCC
Q 046257 624 VDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMNDRK 699 (838)
Q Consensus 624 v~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~~g 699 (838)
-.+|.+.+++++|.+.++.+ ++++|+++..+..++.+|...|++++|.+.++...+.+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~------------------l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERA------------------LELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHH------------------HHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 35788999999999999988 88999999999999999999999999999999987643
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.012 Score=60.76 Aligned_cols=82 Identities=12% Similarity=0.198 Sum_probs=32.8
Q ss_pred ChHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccC-CCchHHHHHHHHHhcCCHHHHHHH
Q 046257 561 HTKKALEVFKEMRRQDLEFDGITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYP-TMEHYSCMVDLYSRAGMLEKAMDI 639 (838)
Q Consensus 561 ~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~G~~~~A~~~ 639 (838)
+.+.|..+|+..++. +..+...+...+.-+.+.|+.+.++.+|++.+....-.. ....|...++.=.+.|+++...++
T Consensus 51 d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v 129 (280)
T PF05843_consen 51 DPKRARKIFERGLKK-FPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKV 129 (280)
T ss_dssp -HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHH
T ss_pred CHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 333355555544442 222233344444444444555555555554442211111 112444444444455555554444
Q ss_pred HhhC
Q 046257 640 INRM 643 (838)
Q Consensus 640 ~~~m 643 (838)
.+++
T Consensus 130 ~~R~ 133 (280)
T PF05843_consen 130 EKRA 133 (280)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.05 Score=51.80 Aligned_cols=116 Identities=15% Similarity=0.147 Sum_probs=80.7
Q ss_pred CChhhHHHHHHHHh-----cCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHcCCChhHHHHHHhcCCCCCcchHHHH
Q 046257 177 PNSFTFSTVLGVLA-----DEGIVATAVQVHTMVIKNGGEVVTSVCNALISMYLKSKMVRDARAVFDGMEDRDSITWNSM 251 (838)
Q Consensus 177 p~~~t~~~ll~~~~-----~~g~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~n~l 251 (838)
-|..+|..+++.+. +.|.++.....+..|.+.|++.|..+|+.|++.+=+ |.+- -..+|+.+
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~----------- 111 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAE----------- 111 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHH-----------
Confidence 46666777776665 457888888999999999999999999999998876 3321 11111111
Q ss_pred HHHHHhCCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCc-HHHHHHHHHHHH
Q 046257 252 VAGYVTNELHMEAFETFNNMGLAGAELTRSTFVSVIKLCATTKE-LRLARQLHSQVL 307 (838)
Q Consensus 252 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~-~~~a~~~~~~~~ 307 (838)
--- --.+.+-|++++++|...|+-||..|+..++..+.+.+. +...+++.-.|.
T Consensus 112 F~h--yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmp 166 (228)
T PF06239_consen 112 FMH--YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMP 166 (228)
T ss_pred hcc--CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 000 112456789999999999999999999999999987664 333444443343
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.0019 Score=42.05 Aligned_cols=29 Identities=31% Similarity=0.628 Sum_probs=27.4
Q ss_pred HhccCCCCchhHHHHHHHHHhcCCchHHH
Q 046257 661 LISLQPHDSAIYVLLSNMYAATGHWQERA 689 (838)
Q Consensus 661 ~~~l~P~~~~~y~~l~~~y~~~g~~~~a~ 689 (838)
.++++|+|+.+|..|+.+|...|++++|.
T Consensus 5 Aie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 5 AIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 48999999999999999999999999986
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.062 Score=57.78 Aligned_cols=120 Identities=16% Similarity=0.090 Sum_probs=87.4
Q ss_pred CCCCCHhhHHHHHHHhcCChhhHHHHHHHHHHHHHh--cCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC----CCCHH
Q 046257 474 GVKPNEFTFSSVINACTAPSAAVEQGKQFHACSIKA--KLNNALCVSSALVTMYSKKGNIESASEVFKRQR----KRDLV 547 (838)
Q Consensus 474 g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~----~~~~~ 547 (838)
+.+.+...+..+++.|... ..++.+..+.-..... ....-..+..++|..|.+.|..+.+..+++.=. -||..
T Consensus 61 ~~~vS~~dld~fvn~~~~~-~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~ 139 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESK-DDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF 139 (429)
T ss_pred CCCCcHHHHHHHHhhcCCH-hHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence 4566777888888888777 7777777665555443 222234445688888888888888888876533 47888
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHhcc
Q 046257 548 SWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGITFIGVITACTHA 594 (838)
Q Consensus 548 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~ 594 (838)
|+|.||..+.+.|++..|.++..+|..++...+..|+...+.+|.+-
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 88888888888888888888888888777777777777777766654
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.44 E-value=1.6 Score=48.47 Aligned_cols=153 Identities=12% Similarity=0.148 Sum_probs=95.4
Q ss_pred CCChHHHHHHHccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC----hhhHHHHHHHHhcCCChHHHHHH
Q 046257 126 TNNVEDGRRVFDDMNESNVVSWTSLLSGYARNKMNDRVLELFHRMQVEGIKPN----SFTFSTVLGVLADEGIVATAVQV 201 (838)
Q Consensus 126 ~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~t~~~ll~~~~~~g~~~~a~~l 201 (838)
-|.+++|.+++-+|.++|.. |..+.+.|+|-...++++. .|-..| ...|..+-..++....+++|.+.
T Consensus 747 ~g~feeaek~yld~drrDLA-----ielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~y 818 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRDLA-----IELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKY 818 (1189)
T ss_pred hcchhHhhhhhhccchhhhh-----HHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 38899999999999888753 5566677777666665542 111111 23566666666666677777776
Q ss_pred HHHHHHhCCCCchhHHHHHHHHhHcCCChhHHHHHHhcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCChh
Q 046257 202 HTMVIKNGGEVVTSVCNALISMYLKSKMVRDARAVFDGMEDRDSITWNSMVAGYVTNELHMEAFETFNNMGLAGAELTRS 281 (838)
Q Consensus 202 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 281 (838)
|..--.. ...+..|.+..++++-+.+-..+++ |......|...+.+.|..++|.+.|-+--. |
T Consensus 819 Y~~~~~~---------e~~~ecly~le~f~~LE~la~~Lpe-~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----p--- 881 (1189)
T KOG2041|consen 819 YSYCGDT---------ENQIECLYRLELFGELEVLARTLPE-DSELLPVMADMFTSVGMCDQAVEAYLRRSL----P--- 881 (1189)
T ss_pred HHhccch---------HhHHHHHHHHHhhhhHHHHHHhcCc-ccchHHHHHHHHHhhchHHHHHHHHHhccC----c---
Confidence 6542111 2345555555666666666666655 445566777888888888888887755321 1
Q ss_pred hHHHHHHHHhccCcHHHHHHHHHH
Q 046257 282 TFVSVIKLCATTKELRLARQLHSQ 305 (838)
Q Consensus 282 t~~~ll~~~~~~~~~~~a~~~~~~ 305 (838)
-..+.+|...+++.+|.++-+.
T Consensus 882 --kaAv~tCv~LnQW~~avelaq~ 903 (1189)
T KOG2041|consen 882 --KAAVHTCVELNQWGEAVELAQR 903 (1189)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHh
Confidence 1345667777777777665543
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.041 Score=46.32 Aligned_cols=81 Identities=7% Similarity=0.110 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCChhHHHHHHHHHhccC--------CHHHHHHHHHHHHhcCCccCCCc
Q 046257 548 SWNSMICGYAQHGHTKKALEVFKEMRRQDL-EFDGITFIGVITACTHAG--------LVDEGQQYFDIMVNEHHIYPTME 618 (838)
Q Consensus 548 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~pd~~t~~~ll~a~~~~g--------~~~~a~~~~~~m~~~~~~~p~~~ 618 (838)
|-...|.-+...|++.....+|+.+++.|+ -|+..+|+.++.+-.+.. .+-+.+.+++.|. ..+++|+.+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL-~~~lKP~~e 105 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDIL-SNKLKPNDE 105 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHH-HhccCCcHH
Confidence 334456666677999999999999999999 899999999998876543 3456778889998 568999999
Q ss_pred hHHHHHHHHHh
Q 046257 619 HYSCMVDLYSR 629 (838)
Q Consensus 619 ~y~~lv~~l~r 629 (838)
+|+.++..+.+
T Consensus 106 tYnivl~~Llk 116 (120)
T PF08579_consen 106 TYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHH
Confidence 99998877754
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.85 Score=47.24 Aligned_cols=43 Identities=14% Similarity=0.336 Sum_probs=25.3
Q ss_pred HHHHHHcCCChHHHHHHHHhcccCCCeeehHHHHHHHHHc-CChHHHHHHHHHhhh
Q 046257 321 LMVAYSKCGKMEDASKIFSMMREMKDVVSWTAMISGHLQN-GAIDLAVNFFCQMTR 375 (838)
Q Consensus 321 Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~ 375 (838)
.+..|.+.|++..|-+++..+. ..|-.. |++++|++.|++..+
T Consensus 100 A~~~y~~~G~~~~aA~~~~~lA------------~~ye~~~~d~e~Ai~~Y~~A~~ 143 (282)
T PF14938_consen 100 AIEIYREAGRFSQAAKCLKELA------------EIYEEQLGDYEKAIEYYQKAAE 143 (282)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHH------------HHHCCTT--HHHHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHH
Confidence 3456677777777766666554 445555 677777777766654
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.37 Score=44.47 Aligned_cols=145 Identities=13% Similarity=0.147 Sum_probs=101.9
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHHHhc
Q 046257 531 IESASEVFKRQRKRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGITFIGVITACTHAGLVDEGQQYFDIMVNE 610 (838)
Q Consensus 531 ~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 610 (838)
+.+|.+-|+.. |.+..--.|..+....|+..+|...|++...-=+.-|.....++.++....++..++...++...+.
T Consensus 76 ~Rea~~~~~~A--pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~ 153 (251)
T COG4700 76 LREATEELAIA--PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEY 153 (251)
T ss_pred HHHHHHHHhhc--hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhc
Confidence 34444444432 3444445677888889999999999999877444456778888999999999999999999888743
Q ss_pred CCccCCCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHH
Q 046257 611 HHIYPTMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERAR 690 (838)
Q Consensus 611 ~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~ 690 (838)
..-.-++...-.+...|.-.|+.++|+.-|+.. +.--| ++..-...+.++++.|+.+++..
T Consensus 154 ~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a------------------~~~yp-g~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 154 NPAFRSPDGHLLFARTLAAQGKYADAESAFEVA------------------ISYYP-GPQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred CCccCCCCchHHHHHHHHhcCCchhHHHHHHHH------------------HHhCC-CHHHHHHHHHHHHHhcchhHHHH
Confidence 322223445556778888999999999888865 22334 55566667778899998888765
Q ss_pred HHHHHh
Q 046257 691 VRKLMN 696 (838)
Q Consensus 691 ~~~~m~ 696 (838)
-+..+-
T Consensus 215 q~~~v~ 220 (251)
T COG4700 215 QYVAVV 220 (251)
T ss_pred HHHHHH
Confidence 554443
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.01 Score=45.67 Aligned_cols=53 Identities=19% Similarity=0.262 Sum_probs=25.6
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHHH
Q 046257 554 CGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITACTHAGLVDEGQQYFDIMV 608 (838)
Q Consensus 554 ~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 608 (838)
..+.+.|++++|++.|++.++. .|+ ...+..+..++...|++++|..+|+.++
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQ--DPDNPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCC--STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444555555555555555552 343 2334444445555555555555555544
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.075 Score=53.88 Aligned_cols=93 Identities=15% Similarity=0.143 Sum_probs=55.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh----hHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCC-CchHHHH
Q 046257 549 WNSMICGYAQHGHTKKALEVFKEMRRQDLEFDG----ITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPT-MEHYSCM 623 (838)
Q Consensus 549 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~l 623 (838)
|+.-+.-+.+.|++++|+..|+.+.+ ..|+. ..+..+..++...|++++|...|+.+.+.+.-.|. .+.+--+
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~--~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVK--KYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH--HCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 33333333445677777777777776 44553 34555666677777777777777777655533222 2233344
Q ss_pred HHHHHhcCCHHHHHHHHhhC
Q 046257 624 VDLYSRAGMLEKAMDIINRM 643 (838)
Q Consensus 624 v~~l~r~G~~~~A~~~~~~m 643 (838)
...+...|+.++|.+.+++.
T Consensus 224 g~~~~~~g~~~~A~~~~~~v 243 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQV 243 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 55666777777777777765
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.18 Score=46.10 Aligned_cols=111 Identities=14% Similarity=0.134 Sum_probs=85.2
Q ss_pred HHHHhccCCHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCC
Q 046257 588 ITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPH 667 (838)
Q Consensus 588 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~ 667 (838)
..-+-+.|++++|..+|.-+. .+.. -+..-+..|...+-..|++++|..++.-. .-++++
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~-~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A------------------~~l~~~ 103 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLC-IYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVA------------------FTLLKN 103 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHH-HhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHcccC
Confidence 334467899999999998876 3221 23445566778888899999999999865 456788
Q ss_pred CchhHHHHHHHHHhcCCchHHHHHHHHHhhCCCccCCceeEEEECCEEEEEeeCCCCCCChHHHHHHHHHHHHHHHHc
Q 046257 668 DSAIYVLLSNMYAATGHWQERARVRKLMNDRKVKKEAGYSWIEVKNKTYSFLAGDISHPQSNQIYSKLEELSTRLKDA 745 (838)
Q Consensus 668 ~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~~~~~s~i~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~~~ 745 (838)
||.+++..+..|...|+.+.|...+....+ +|+-..+.++...+.+.+++.
T Consensus 104 dp~p~f~agqC~l~l~~~~~A~~~f~~a~~---------------------------~~~~~~l~~~A~~~L~~l~~~ 154 (165)
T PRK15331 104 DYRPVFFTGQCQLLMRKAAKARQCFELVNE---------------------------RTEDESLRAKALVYLEALKTA 154 (165)
T ss_pred CCCccchHHHHHHHhCCHHHHHHHHHHHHh---------------------------CcchHHHHHHHHHHHHHHHcc
Confidence 999999999999999999999999988764 355566777777777666543
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.79 Score=47.40 Aligned_cols=155 Identities=15% Similarity=0.104 Sum_probs=78.4
Q ss_pred cCCHHHHHHHHHhcC-CCCHHH--HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccCCHHHHHHH
Q 046257 528 KGNIESASEVFKRQR-KRDLVS--WNSMICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITACTHAGLVDEGQQY 603 (838)
Q Consensus 528 ~g~~~~A~~~f~~~~-~~~~~~--~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~ 603 (838)
.|+.++|.+-|+.|. .|.... ...|.-.--+.|..+.|...-++.-+ ..|. .....+++...+..|+++.|+++
T Consensus 133 eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~--~Ap~l~WA~~AtLe~r~~~gdWd~AlkL 210 (531)
T COG3898 133 EGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAARHYAERAAE--KAPQLPWAARATLEARCAAGDWDGALKL 210 (531)
T ss_pred cCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHh--hccCCchHHHHHHHHHHhcCChHHHHHH
Confidence 466777777777665 232211 22222223345666666666665554 4444 34556666666677777777777
Q ss_pred HHHHHhcCCccCCCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcC
Q 046257 604 FDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATG 683 (838)
Q Consensus 604 ~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g 683 (838)
.+.-....-+.++..--.--+-+-.+ |.+.++.=| .. +.=.+-...++.|+-...-+.-+..|.+.|
T Consensus 211 vd~~~~~~vie~~~aeR~rAvLLtAk------A~s~ldadp---~~----Ar~~A~~a~KL~pdlvPaav~AAralf~d~ 277 (531)
T COG3898 211 VDAQRAAKVIEKDVAERSRAVLLTAK------AMSLLDADP---AS----ARDDALEANKLAPDLVPAAVVAARALFRDG 277 (531)
T ss_pred HHHHHHHHhhchhhHHHHHHHHHHHH------HHHHhcCCh---HH----HHHHHHHHhhcCCccchHHHHHHHHHHhcc
Confidence 76655444455544322211111111 222222111 00 000011125666666666666677777777
Q ss_pred CchHHHHHHHHHhh
Q 046257 684 HWQERARVRKLMND 697 (838)
Q Consensus 684 ~~~~a~~~~~~m~~ 697 (838)
+..++.++++.+-+
T Consensus 278 ~~rKg~~ilE~aWK 291 (531)
T COG3898 278 NLRKGSKILETAWK 291 (531)
T ss_pred chhhhhhHHHHHHh
Confidence 77777777776643
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.061 Score=53.91 Aligned_cols=102 Identities=17% Similarity=0.143 Sum_probs=75.0
Q ss_pred ChhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHh-cC--CHHHHHHHHhhCCCCCCHHHHHHHH
Q 046257 580 DGITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSR-AG--MLEKAMDIINRMPFAASATVWRTVL 656 (838)
Q Consensus 580 d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r-~G--~~~~A~~~~~~m~~~~~~~~w~~ll 656 (838)
|...|..|..+|...|+.+.|..-|....+-.| ++++.+..+...+.. +| .-.+|.++|+++
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g--~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~a------------- 219 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAG--DNPEILLGLAEALYYQAGQQMTAKARALLRQA------------- 219 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhcCCcccHHHHHHHHHH-------------
Confidence 345677777777777777777777776653322 244555556555543 23 345788888887
Q ss_pred HHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhhCCCc
Q 046257 657 AACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMNDRKVK 701 (838)
Q Consensus 657 ~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~~g~~ 701 (838)
+.+||.|..+...|+..+...|++.+|...++.|.+....
T Consensus 220 -----l~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~ 259 (287)
T COG4235 220 -----LALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPA 259 (287)
T ss_pred -----HhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCC
Confidence 8899999999999999999999999999999999875543
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.024 Score=44.16 Aligned_cols=62 Identities=19% Similarity=0.300 Sum_probs=50.8
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh-hHHHHHHHHHhccC-CHHHHHHHHHHHH
Q 046257 545 DLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDG-ITFIGVITACTHAG-LVDEGQQYFDIMV 608 (838)
Q Consensus 545 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g-~~~~a~~~~~~m~ 608 (838)
+...|..+...+...|++++|+..|++.++ +.|+. ..|..+..++...| ++++|.+.++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~--~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIE--LDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHH--HSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 456788888889999999999999999888 56764 56777778888888 6889998888776
|
... |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.90 E-value=3.2 Score=46.84 Aligned_cols=113 Identities=17% Similarity=0.205 Sum_probs=82.8
Q ss_pred CChhHHHHHHHHHHcCCChHHHHHHHHhcccCCCeeehHHHHHHHHHcCChHHHHHHHHHhhhcCCCCCcccHHHHHhhC
Q 046257 313 FDHNIRTGLMVAYSKCGKMEDASKIFSMMREMKDVVSWTAMISGHLQNGAIDLAVNFFCQMTREGVRPNGFTYSIILTAQ 392 (838)
Q Consensus 313 ~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~ 392 (838)
....+.+--+.-+...|+..+|.++-.+.+ -||-..|--=+.+++..+++++-+++-+.+.. +.-|
T Consensus 682 f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-ipdKr~~wLk~~aLa~~~kweeLekfAkskks------PIGy------- 747 (829)
T KOG2280|consen 682 FVDLSLHDTVTTLILIGQNKRAEQLKSDFK-IPDKRLWWLKLTALADIKKWEELEKFAKSKKS------PIGY------- 747 (829)
T ss_pred cccCcHHHHHHHHHHccchHHHHHHHHhcC-CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC------CCCc-------
Confidence 333444555556677889999999999988 88888888888899999999888777666653 2222
Q ss_pred CCCChhHHHHHHHHhhccCCcchhhHHHHHHHHcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHH
Q 046257 393 PAVSPFQVHAHIIKTNYEKSFSVGTALLNAYVKKGILDEAAKVFELIDEKDIVAWSAMLAGYAQIGDTEGAVKIYR 468 (838)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 468 (838)
.-.+..+.+.|+.++|.+.+.....-. -...+|.+.|++.+|.++--
T Consensus 748 ------------------------~PFVe~c~~~~n~~EA~KYiprv~~l~-----ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 748 ------------------------LPFVEACLKQGNKDEAKKYIPRVGGLQ-----EKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred ------------------------hhHHHHHHhcccHHHHhhhhhccCChH-----HHHHHHHHhccHHHHHHHHH
Confidence 135666788899999999987775422 56778888888888877643
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=95.90 E-value=1.4 Score=52.15 Aligned_cols=158 Identities=15% Similarity=0.160 Sum_probs=103.3
Q ss_pred cCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCChhhHHHHHHHHHH
Q 046257 426 KGILDEAAKVFELIDEKDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFHAC 505 (838)
Q Consensus 426 ~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~ 505 (838)
.+++++|..-+.++. ...|.-.+.---++|.+.+|+.++ +|+...+.-+..+|+..
T Consensus 893 L~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~h------------- 948 (1265)
T KOG1920|consen 893 LKRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADH------------- 948 (1265)
T ss_pred HHHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHH-------------
Confidence 456777777776664 334555555556678888888775 68887777777666533
Q ss_pred HHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhH--
Q 046257 506 SIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQRKRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGIT-- 583 (838)
Q Consensus 506 ~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t-- 583 (838)
+.+.. .++--.-+|.+||+.++|.+ +|...|++++|+.+..+|.. .-|...
T Consensus 949 L~~~~------~~~~Aal~Ye~~GklekAl~------------------a~~~~~dWr~~l~~a~ql~~---~~de~~~~ 1001 (1265)
T KOG1920|consen 949 LREEL------MSDEAALMYERCGKLEKALK------------------AYKECGDWREALSLAAQLSE---GKDELVIL 1001 (1265)
T ss_pred HHHhc------cccHHHHHHHHhccHHHHHH------------------HHHHhccHHHHHHHHHhhcC---CHHHHHHH
Confidence 11111 11112336889999999876 45567888888888887743 223322
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHhcCCHHHHHHHHhhC
Q 046257 584 FIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDIINRM 643 (838)
Q Consensus 584 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~~m 643 (838)
--.|..-+...++.-+|-++...-.. . +.--+..|+++-.+++|..+....
T Consensus 1002 a~~L~s~L~e~~kh~eAa~il~e~~s----d-----~~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1002 AEELVSRLVEQRKHYEAAKILLEYLS----D-----PEEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred HHHHHHHHHHcccchhHHHHHHHHhc----C-----HHHHHHHHhhHhHHHHHHHHHHhc
Confidence 24566777788888888877765431 1 344567888888899998887765
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=95.88 E-value=3 Score=44.29 Aligned_cols=343 Identities=14% Similarity=0.121 Sum_probs=177.0
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHhCC----CCChhHHHHHHHHHHcCCChHHHHHHHHhccc--CCCe-eehHHHHHHH
Q 046257 285 SVIKLCATTKELRLARQLHSQVLKNGI----DFDHNIRTGLMVAYSKCGKMEDASKIFSMMRE--MKDV-VSWTAMISGH 357 (838)
Q Consensus 285 ~ll~~~~~~~~~~~a~~~~~~~~~~g~----~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~--~~~~-~~~~~li~~~ 357 (838)
..+..+...|.+.+|+.+++.+...=+ ..+..+|+.++-++++.= |-++.+ .-|+ .-|--||..|
T Consensus 133 i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSY--------fLEl~e~~s~dl~pdyYemilfY 204 (549)
T PF07079_consen 133 IEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSY--------FLELKESMSSDLYPDYYEMILFY 204 (549)
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHH--------HHHHHHhcccccChHHHHHHHHH
Confidence 345566678888888888877765543 478888888887776543 222221 1122 2244555555
Q ss_pred HHcCChHHHHHHHHHhhhcCCCCCcccHHHHHhhCCCCCh-----h-HHHHHHHHhhccCCcc-hhhHHHHHHHHcCCHH
Q 046257 358 LQNGAIDLAVNFFCQMTREGVRPNGFTYSIILTAQPAVSP-----F-QVHAHIIKTNYEKSFS-VGTALLNAYVKKGILD 430 (838)
Q Consensus 358 ~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~-----~-~~~~~~~~~~~~~~~~-~~~~Li~~y~~~g~~~ 430 (838)
.+.=..-++. .=..+.|...-+..++....-... + ++.....+.-+.|+-. +...|+.-+.+ +.+
T Consensus 205 ~kki~~~d~~------~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e 276 (549)
T PF07079_consen 205 LKKIHAFDQR------PYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPE 276 (549)
T ss_pred HHHHHHHhhc------hHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChH
Confidence 4432111110 001122333223332222111111 1 4444444444444432 23344444443 444
Q ss_pred HHHHHHHhcC--------CCCcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHh----------hHHHHHHHhcCC
Q 046257 431 EAAKVFELID--------EKDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEF----------TFSSVINACTAP 492 (838)
Q Consensus 431 ~A~~~f~~~~--------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----------t~~~ll~a~~~~ 492 (838)
++..+.+.+. +.=+.++..++...++.++..+|-+.+.-+.- +.|+.. ++..++ |..-
T Consensus 277 ~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~--ldp~~svs~Kllls~~~lq~Iv--~~DD 352 (549)
T PF07079_consen 277 QVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKI--LDPRISVSEKLLLSPKVLQDIV--CEDD 352 (549)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh--cCCcchhhhhhhcCHHHHHHHH--hcch
Confidence 4444444332 23345788888889999999999887766543 334432 111111 1011
Q ss_pred hhhHHHH---HHHHHHHHHhcCCCchhHHHHH---HHHHHhcCC-HHHHHHHHHhcC---CCCHHHHHHHHH----HHHH
Q 046257 493 SAAVEQG---KQFHACSIKAKLNNALCVSSAL---VTMYSKKGN-IESASEVFKRQR---KRDLVSWNSMIC----GYAQ 558 (838)
Q Consensus 493 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l---i~~y~k~g~-~~~A~~~f~~~~---~~~~~~~~~li~----~~~~ 558 (838)
.....- ..++..+....++.- ....-| ..-|-+.|. -++|.++++.+. +-|..+-|.... +|.+
T Consensus 353 -~~~Tklr~yL~lwe~~qs~DiDrq-QLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~q 430 (549)
T PF07079_consen 353 -ESYTKLRDYLNLWEEIQSYDIDRQ-QLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQ 430 (549)
T ss_pred -HHHHHHHHHHHHHHHHHhhcccHH-HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence 111111 122222222222211 111112 223445555 677888877665 446555554322 2322
Q ss_pred c---CChHHHHHHHHHHHHcCCCCChh----HHHHHHHH--HhccCCHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHh
Q 046257 559 H---GHTKKALEVFKEMRRQDLEFDGI----TFIGVITA--CTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSR 629 (838)
Q Consensus 559 ~---g~~~~A~~l~~~m~~~g~~pd~~----t~~~ll~a--~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r 629 (838)
. ....+-+.+-+-..+.|+.|-.+ .-+.|..| +...|++.++.-+-.-.. .+.|++.+|..+.-.+..
T Consensus 431 aLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~---~iaPS~~~~RLlGl~l~e 507 (549)
T PF07079_consen 431 ALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLT---KIAPSPQAYRLLGLCLME 507 (549)
T ss_pred HHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH---HhCCcHHHHHHHHHHHHH
Confidence 1 12334444445556778887543 33444443 356788888876655444 578999999988888888
Q ss_pred cCCHHHHHHHHhhCCCCCCHHHHHH
Q 046257 630 AGMLEKAMDIINRMPFAASATVWRT 654 (838)
Q Consensus 630 ~G~~~~A~~~~~~m~~~~~~~~w~~ 654 (838)
..+++||.+++.+.| |+..+|.+
T Consensus 508 ~k~Y~eA~~~l~~LP--~n~~~~ds 530 (549)
T PF07079_consen 508 NKRYQEAWEYLQKLP--PNERMRDS 530 (549)
T ss_pred HhhHHHHHHHHHhCC--CchhhHHH
Confidence 899999999999996 45555543
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.011 Score=41.17 Aligned_cols=42 Identities=21% Similarity=0.471 Sum_probs=36.7
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHH
Q 046257 618 EHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSN 677 (838)
Q Consensus 618 ~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~ 677 (838)
..+..+...|.+.|++++|++.+++. ++.+|+|+..+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~------------------l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRA------------------LALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH------------------HHHCcCCHHHHHHhhh
Confidence 45677899999999999999999988 7889999998887764
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.075 Score=53.85 Aligned_cols=96 Identities=11% Similarity=0.130 Sum_probs=76.6
Q ss_pred hHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCC----chHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHH
Q 046257 582 ITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTM----EHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLA 657 (838)
Q Consensus 582 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~----~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~ 657 (838)
..|...+......|++++|...|+..++.+ |+. ..+-.+..+|...|++++|...|+++
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y---P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~v-------------- 206 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKY---PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASV-------------- 206 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHC---cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH--------------
Confidence 345555555566799999999999999766 543 35667889999999999999999987
Q ss_pred HHHHhccCC---CCchhHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 046257 658 ACRLISLQP---HDSAIYVLLSNMYAATGHWQERARVRKLMNDR 698 (838)
Q Consensus 658 ~c~~~~l~P---~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~~ 698 (838)
++..| ..+.++..++.+|...|++++|.++++...+.
T Consensus 207 ----v~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 207 ----VKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred ----HHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 33334 46777788899999999999999999988753
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=95.69 E-value=1.8 Score=40.20 Aligned_cols=129 Identities=9% Similarity=0.087 Sum_probs=100.7
Q ss_pred hcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh---
Q 046257 509 AKLNNALCVSSALVTMYSKKGNIESASEVFKRQR----KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDG--- 581 (838)
Q Consensus 509 ~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~--- 581 (838)
....|++..--.|.......|+..+|...|++.. ..|....-.+..+....+++..|..+++.+.+. .|+.
T Consensus 83 ~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~--~pa~r~p 160 (251)
T COG4700 83 LAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEY--NPAFRSP 160 (251)
T ss_pred HhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhc--CCccCCC
Confidence 3445666666678888999999999999998765 457777778888888899999999999999884 3542
Q ss_pred hHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHhcCCHHHHHHHHhh
Q 046257 582 ITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDIINR 642 (838)
Q Consensus 582 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~~ 642 (838)
.+...+..++...|...+|..-|+....- -|+...-.-....+.+.|+.++|..-+..
T Consensus 161 d~~Ll~aR~laa~g~~a~Aesafe~a~~~---ypg~~ar~~Y~e~La~qgr~~ea~aq~~~ 218 (251)
T COG4700 161 DGHLLFARTLAAQGKYADAESAFEVAISY---YPGPQARIYYAEMLAKQGRLREANAQYVA 218 (251)
T ss_pred CchHHHHHHHHhcCCchhHHHHHHHHHHh---CCCHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 35666778889999999999999998843 36666555556788999999888765443
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.62 E-value=5.3 Score=45.20 Aligned_cols=109 Identities=19% Similarity=0.218 Sum_probs=86.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCH
Q 046257 518 SSALVTMYSKKGNIESASEVFKRQRKRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGITFIGVITACTHAGLV 597 (838)
Q Consensus 518 ~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~ 597 (838)
.+--+.-+..-|+..+|.++-.+.+-||-..|---+.+++..+++++-.++-+.+. + ++-|.-...+|.+.|+.
T Consensus 687 l~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskk-----s-PIGy~PFVe~c~~~~n~ 760 (829)
T KOG2280|consen 687 LHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKK-----S-PIGYLPFVEACLKQGNK 760 (829)
T ss_pred HHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccC-----C-CCCchhHHHHHHhcccH
Confidence 33444456678999999999999999999999999999999999987766655442 2 56677788999999999
Q ss_pred HHHHHHHHHHHhcCCccCCCchHHHHHHHHHhcCCHHHHHHHHhh
Q 046257 598 DEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDIINR 642 (838)
Q Consensus 598 ~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~~ 642 (838)
+||.+|+.+.. | +.-.+++|.+.|++.+|.+.--+
T Consensus 761 ~EA~KYiprv~---~-------l~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 761 DEAKKYIPRVG---G-------LQEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHHhhhhhccC---C-------hHHHHHHHHHhccHHHHHHHHHH
Confidence 99999987543 2 22578999999999999888654
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.17 Score=46.37 Aligned_cols=106 Identities=23% Similarity=0.313 Sum_probs=74.1
Q ss_pred HHHcCChHHHHHHHHHHHHc--C-CCCChhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHhcCC
Q 046257 556 YAQHGHTKKALEVFKEMRRQ--D-LEFDGITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGM 632 (838)
Q Consensus 556 ~~~~g~~~~A~~l~~~m~~~--g-~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~ 632 (838)
....|+.+.+++.++++... | +-|+... ..-+......+..+. ......++..+...|+
T Consensus 16 ~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~----------~~W~~~~r~~l~~~~--------~~~~~~l~~~~~~~~~ 77 (146)
T PF03704_consen 16 AARAGDPEEAIELLEEALALYRGDFLPDLDD----------EEWVEPERERLRELY--------LDALERLAEALLEAGD 77 (146)
T ss_dssp HHHTT-HHHHHHHHHHHHTT--SSTTGGGTT----------STTHHHHHHHHHHHH--------HHHHHHHHHHHHHTT-
T ss_pred HHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc----------cHHHHHHHHHHHHHH--------HHHHHHHHHHHHhccC
Confidence 45677888888888888863 2 1122111 122233333343332 1245667888899999
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhh
Q 046257 633 LEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMND 697 (838)
Q Consensus 633 ~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~ 697 (838)
+++|.+..+++ +.++|-|...|..++.+|...|+..+|.++++.++.
T Consensus 78 ~~~a~~~~~~~------------------l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 78 YEEALRLLQRA------------------LALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHH------------------HHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH------------------HhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 99999999987 889999999999999999999999999999988863
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.82 Score=45.98 Aligned_cols=54 Identities=13% Similarity=0.116 Sum_probs=40.8
Q ss_pred HHHHHHcCCHHHHHHHHHhcCCCCcc---h---HHHHHHHHHhcCCchHHHHHHHHhhcC
Q 046257 420 LNAYVKKGILDEAAKVFELIDEKDIV---A---WSAMLAGYAQIGDTEGAVKIYRQLTSE 473 (838)
Q Consensus 420 i~~y~~~g~~~~A~~~f~~~~~~~~~---~---~~~li~~~~~~g~~~~A~~l~~~m~~~ 473 (838)
...+.+.|++++|.+.|+.+....+. . .-.++.+|.+.+++++|...|++..+.
T Consensus 39 A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 39 AQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 34456789999999999998753221 1 234567788899999999999998874
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.43 Score=46.53 Aligned_cols=170 Identities=11% Similarity=0.054 Sum_probs=116.7
Q ss_pred HHHHHHHhHcCCChhHHHHHHhcCCC--CCc--------chHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCChhhHHHH
Q 046257 217 CNALISMYLKSKMVRDARAVFDGMED--RDS--------ITWNSMVAGYVTNELHMEAFETFNNMGLAGAELTRSTFVSV 286 (838)
Q Consensus 217 ~~~li~~y~~~g~~~~A~~~f~~m~~--~~~--------~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 286 (838)
+++|+..|.-..-+++-...|+.-.. ..+ ..-+.++..+.-.|.+.-.+.++.+.++..-+.++.....+
T Consensus 139 qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~L 218 (366)
T KOG2796|consen 139 QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGL 218 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHH
Confidence 45555555544444444444443222 122 23456777777788888899999999887667777888888
Q ss_pred HHHHhccCcHHHHHHHHHHHHHhCCCCChhHHHHH-----HHHHHcCCChHHHHHHHHhccc--CCCeeehHHHHHHHHH
Q 046257 287 IKLCATTKELRLARQLHSQVLKNGIDFDHNIRTGL-----MVAYSKCGKMEDASKIFSMMRE--MKDVVSWTAMISGHLQ 359 (838)
Q Consensus 287 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~L-----i~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~~li~~~~~ 359 (838)
.+.--+.||.+.|...|+.+.+..-..+....+.+ ...|.-.+++..|.+.|++++. ..|++.-|.=.-+..-
T Consensus 219 gr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllY 298 (366)
T KOG2796|consen 219 GRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLY 298 (366)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHH
Confidence 88888999999999999988876544444444444 4456677889999999998874 3455555554444455
Q ss_pred cCChHHHHHHHHHhhhcCCCCCcccHHHH
Q 046257 360 NGAIDLAVNFFCQMTREGVRPNGFTYSII 388 (838)
Q Consensus 360 ~g~~~~A~~l~~~m~~~g~~pd~~t~~~l 388 (838)
.|+..+|++.++.|... .|...+-.++
T Consensus 299 lg~l~DAiK~~e~~~~~--~P~~~l~es~ 325 (366)
T KOG2796|consen 299 LGKLKDALKQLEAMVQQ--DPRHYLHESV 325 (366)
T ss_pred HHHHHHHHHHHHHHhcc--CCccchhhhH
Confidence 68999999999999874 5555555433
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.17 Score=52.81 Aligned_cols=128 Identities=11% Similarity=0.068 Sum_probs=95.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHhcC
Q 046257 552 MICGYAQHGHTKKALEVFKEMRRQDLEFDGITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAG 631 (838)
Q Consensus 552 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G 631 (838)
-.+.|.+.|++..|...|++.... -+...+ -+.++...... . ....+..+.-.|.+.+
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~--l~~~~~-----------~~~ee~~~~~~-~--------k~~~~lNlA~c~lKl~ 271 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSF--LEYRRS-----------FDEEEQKKAEA-L--------KLACHLNLAACYLKLK 271 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHH--hhcccc-----------CCHHHHHHHHH-H--------HHHHhhHHHHHHHhhh
Confidence 356788889999999999887662 111111 11122222211 1 1234566777888999
Q ss_pred CHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhhCCCccCCceeEEEE
Q 046257 632 MLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMNDRKVKKEAGYSWIEV 711 (838)
Q Consensus 632 ~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~~~~~s~i~~ 711 (838)
++.+|++.-++. |+++|+|.-+.+.-+.+|...|.+++|...++++.+
T Consensus 272 ~~~~Ai~~c~kv------------------Le~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k-------------- 319 (397)
T KOG0543|consen 272 EYKEAIESCNKV------------------LELDPNNVKALYRRGQALLALGEYDLARDDFQKALK-------------- 319 (397)
T ss_pred hHHHHHHHHHHH------------------HhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHH--------------
Confidence 999999888877 899999999999999999999999999999999976
Q ss_pred CCEEEEEeeCCCCCCChHHHHHHHHHHHHHHHHc
Q 046257 712 KNKTYSFLAGDISHPQSNQIYSKLEELSTRLKDA 745 (838)
Q Consensus 712 ~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~~~ 745 (838)
..|..+.|...|..+.+++++.
T Consensus 320 ------------~~P~Nka~~~el~~l~~k~~~~ 341 (397)
T KOG0543|consen 320 ------------LEPSNKAARAELIKLKQKIREY 341 (397)
T ss_pred ------------hCCCcHHHHHHHHHHHHHHHHH
Confidence 3577888999888888877763
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.049 Score=58.01 Aligned_cols=64 Identities=13% Similarity=0.048 Sum_probs=57.6
Q ss_pred CchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchh---HHHHHHHHHhcCCchHHHHHHH
Q 046257 617 MEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAI---YVLLSNMYAATGHWQERARVRK 693 (838)
Q Consensus 617 ~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~---y~~l~~~y~~~g~~~~a~~~~~ 693 (838)
...+..+..+|.+.|++++|...+++. ++++|++..+ |+.++.+|+..|+.++|...++
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rA------------------LeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~Lr 136 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETA------------------LELNPNPDEAQAAYYNKACCHAYREEGKKAADCLR 136 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH------------------HhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 456788899999999999999999987 8999988854 9999999999999999999999
Q ss_pred HHhhC
Q 046257 694 LMNDR 698 (838)
Q Consensus 694 ~m~~~ 698 (838)
+..+.
T Consensus 137 rALel 141 (453)
T PLN03098 137 TALRD 141 (453)
T ss_pred HHHHh
Confidence 98774
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.092 Score=41.36 Aligned_cols=51 Identities=25% Similarity=0.296 Sum_probs=27.2
Q ss_pred HHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 046257 524 MYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRR 574 (838)
Q Consensus 524 ~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 574 (838)
.|.+.+++++|.++++.+. +.+...|......|.+.|++++|.+.|++..+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3455555555555555544 22444455555555555555555555555555
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=95.04 E-value=5.9 Score=42.25 Aligned_cols=372 Identities=10% Similarity=0.065 Sum_probs=177.7
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhCC----CCchhHHHHHHHHhHcCCChhHHHHHHhcCCCCCcchHHHHHHHHHhC
Q 046257 183 STVLGVLADEGIVATAVQVHTMVIKNGG----EVVTSVCNALISMYLKSKMVRDARAVFDGMEDRDSITWNSMVAGYVTN 258 (838)
Q Consensus 183 ~~ll~~~~~~g~~~~a~~l~~~~~~~g~----~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~ 258 (838)
+..+.++...|.+.+|+.++++++..=+ .-+..+||.++-++++.--++ +-+.+...=..-|--||-.|.+.
T Consensus 132 ~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLE----l~e~~s~dl~pdyYemilfY~kk 207 (549)
T PF07079_consen 132 EIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLE----LKESMSSDLYPDYYEMILFYLKK 207 (549)
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHH----HHHhcccccChHHHHHHHHHHHH
Confidence 3445566677777777777777665433 366777777777776542111 11111111122344555555443
Q ss_pred CChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhcc--CcHHHHHHHHHHHHHhCCCCChh-HHHHHHHHHHcCCChHHHH
Q 046257 259 ELHMEAFETFNNMGLAGAELTRSTFVSVIKLCATT--KELRLARQLHSQVLKNGIDFDHN-IRTGLMVAYSKCGKMEDAS 335 (838)
Q Consensus 259 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~--~~~~~a~~~~~~~~~~g~~~~~~-~~~~Li~~y~~~g~~~~A~ 335 (838)
=+.-++ -.-..+.|....+..++....-. ..+.--.+++..-.+.-+.|+-. +...|+.-..+ +.+++.
T Consensus 208 i~~~d~------~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~ 279 (549)
T PF07079_consen 208 IHAFDQ------RPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVG 279 (549)
T ss_pred HHHHhh------chHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHH
Confidence 111111 00012334444444444433221 22333334444444444555432 33445555554 455555
Q ss_pred HHHHhccc-------CCCeeehHHHHHHHHHcCChHHHHHHHHHhhhcCCCCCcccHHHHHhhCCCCChhHHHHHHHHhh
Q 046257 336 KIFSMMRE-------MKDVVSWTAMISGHLQNGAIDLAVNFFCQMTREGVRPNGFTYSIILTAQPAVSPFQVHAHIIKTN 408 (838)
Q Consensus 336 ~~f~~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~ 408 (838)
.+-+.+.. ..-+.++..++...++.++..+|-+.+.-+.. +.|+...-.-++ +..
T Consensus 280 ~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~--ldp~~svs~Kll----------ls~------ 341 (549)
T PF07079_consen 280 HFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKI--LDPRISVSEKLL----------LSP------ 341 (549)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh--cCCcchhhhhhh----------cCH------
Confidence 54444331 22345677888888888888888887776654 233322110000 000
Q ss_pred ccCCcchhhHHHHHHH----HcCCHHHHHHHHHhcCCCCcc-----hHHHH-HHHHHhcCC-chHHHHHHHHhhcCCCCC
Q 046257 409 YEKSFSVGTALLNAYV----KKGILDEAAKVFELIDEKDIV-----AWSAM-LAGYAQIGD-TEGAVKIYRQLTSEGVKP 477 (838)
Q Consensus 409 ~~~~~~~~~~Li~~y~----~~g~~~~A~~~f~~~~~~~~~-----~~~~l-i~~~~~~g~-~~~A~~l~~~m~~~g~~p 477 (838)
.+|.++.+ ..-+..+-..+++.+...|+. .|-.- ..-+-+.|. -++|+++++...+ +.|
T Consensus 342 --------~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~--ft~ 411 (549)
T PF07079_consen 342 --------KVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQ--FTN 411 (549)
T ss_pred --------HHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH--hcc
Confidence 12222222 011122223444444443332 22211 222334454 7889999988876 333
Q ss_pred CHhhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHH--hcCCCCHHHHHHHHHH
Q 046257 478 NEFTFSSVINACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFK--RQRKRDLVSWNSMICG 555 (838)
Q Consensus 478 ~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~--~~~~~~~~~~~~li~~ 555 (838)
...-.-. .-....++.+..+....--| .|+ +++.+.+-.. .+.-++...-|-|.+|
T Consensus 412 yD~ec~n---------~v~~fvKq~Y~qaLs~~~~~------rLl-------kLe~fi~e~gl~~i~i~e~eian~LaDA 469 (549)
T PF07079_consen 412 YDIECEN---------IVFLFVKQAYKQALSMHAIP------RLL-------KLEDFITEVGLTPITISEEEIANFLADA 469 (549)
T ss_pred ccHHHHH---------HHHHHHHHHHHHHHhhhhHH------HHH-------HHHHHHHhcCCCcccccHHHHHHHHHHH
Confidence 3321111 11122223333222211000 000 0111110000 0001122233444433
Q ss_pred --HHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCCchHHHHH
Q 046257 556 --YAQHGHTKKALEVFKEMRRQDLEFDGITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMV 624 (838)
Q Consensus 556 --~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv 624 (838)
+..+|++.++.-.-..+.+ +.|+..+|..+.-+......++||+.++..+ +|+...+++-|
T Consensus 470 EyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L------P~n~~~~dskv 532 (549)
T PF07079_consen 470 EYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL------PPNERMRDSKV 532 (549)
T ss_pred HHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC------CCchhhHHHHH
Confidence 4567888888877777777 8998888887777777888999999998743 57777776544
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.52 Score=41.23 Aligned_cols=106 Identities=13% Similarity=0.059 Sum_probs=67.3
Q ss_pred HHHHHHhCCChHHHHHHHHHhhhCCCCCCh--hhHHHHHHHHhccCcHHHHHHHHHHHHHhCCC--CChhHHHHHHHHHH
Q 046257 251 MVAGYVTNELHMEAFETFNNMGLAGAELTR--STFVSVIKLCATTKELRLARQLHSQVLKNGID--FDHNIRTGLMVAYS 326 (838)
Q Consensus 251 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~--~~~~~~~~Li~~y~ 326 (838)
.-.++-..|+.++|+.+|++-...|+.... ..+..+-+.+...|+.++|..+++........ .+..+...+...+.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 345566778888899999888887766542 35666667777888888888888887765321 12233333445666
Q ss_pred cCCChHHHHHHHHhcccCCCeeehHHHHHHH
Q 046257 327 KCGKMEDASKIFSMMREMKDVVSWTAMISGH 357 (838)
Q Consensus 327 ~~g~~~~A~~~f~~~~~~~~~~~~~~li~~~ 357 (838)
..|+.++|.+.+-... .++...|.--|..|
T Consensus 87 ~~gr~~eAl~~~l~~l-a~~~~~y~ra~~~y 116 (120)
T PF12688_consen 87 NLGRPKEALEWLLEAL-AETLPRYRRAIRFY 116 (120)
T ss_pred HCCCHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 7788888777765544 33333444444444
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.89 E-value=8.4 Score=43.94 Aligned_cols=113 Identities=13% Similarity=0.255 Sum_probs=64.0
Q ss_pred hHHHHHHHHHHHHcCCCC-----ChhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHhcCCHHHH
Q 046257 562 TKKALEVFKEMRRQDLEF-----DGITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKA 636 (838)
Q Consensus 562 ~~~A~~l~~~m~~~g~~p-----d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A 636 (838)
.++.+++|.+.-...+-| ........+..|++.|-++|-.-++.+|- .++.+|--+--+.+++++|
T Consensus 610 ~dk~I~LYAEyDrk~LLPFLr~s~~Y~lekA~eiC~q~~~~~E~VYlLgrmG---------n~k~AL~lII~el~die~A 680 (846)
T KOG2066|consen 610 HDKQIELYAEYDRKKLLPFLRKSQNYNLEKALEICSQKNFYEELVYLLGRMG---------NAKEALKLIINELRDIEKA 680 (846)
T ss_pred hhHHHHHHHHHhHhhhhHHHHhcCCCCHHHHHHHHHhhCcHHHHHHHHHhhc---------chHHHHHHHHHHhhCHHHH
Confidence 456777877766544433 22334455566666666666666665552 2333333333445566666
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHh
Q 046257 637 MDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMN 696 (838)
Q Consensus 637 ~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~ 696 (838)
.++.++ ..|.-.|..|++-|. +-|...-.+.| -|...+...+..+|.
T Consensus 681 IefvKe---q~D~eLWe~LI~~~l------dkPe~~~~ll~----i~~~~dpl~ii~kip 727 (846)
T KOG2066|consen 681 IEFVKE---QDDSELWEDLINYSL------DKPEFIKALLN----IGEHEDPLLIIRKIP 727 (846)
T ss_pred HHHHHh---cCCHHHHHHHHHHhh------cCcHHHHHHHH----hhhcccHHHHHhcCC
Confidence 666654 678889999999863 12333333333 233366666666554
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.84 E-value=6.5 Score=41.77 Aligned_cols=96 Identities=10% Similarity=0.128 Sum_probs=69.4
Q ss_pred CCCCchhhHHhhccCCC--CCcccHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcccHHHHHHHhccCCChhhHHHHH
Q 046257 24 SPFYSKKDQSLFDRSPQ--RNFVEYNRLLFEYCRDSLHQEALNLFLGIRRLGLPLFGSTLSSVLKTCGCLFDHVFGRQVH 101 (838)
Q Consensus 24 ~~~~~~~a~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 101 (838)
++..+.+-.++-+++.+ .|+.+|..||.-|-..|..++..+.+++|... .+.-+.+|..-+.+=....+++....++
T Consensus 21 ~~~i~~D~lrLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf 99 (660)
T COG5107 21 SDNIHGDELRLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLF 99 (660)
T ss_pred ccCCCchHHHHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHH
Confidence 33445555588888854 37889999999999999999999999999742 2333445666666555567888888999
Q ss_pred HHHHHhCCCCChhHHHHHHHH
Q 046257 102 CECVKSGFARDVNVSTSLVDL 122 (838)
Q Consensus 102 ~~~~~~g~~~~~~~~~~li~~ 122 (838)
.+.++..+. ...|...++-
T Consensus 100 ~rCL~k~l~--ldLW~lYl~Y 118 (660)
T COG5107 100 GRCLKKSLN--LDLWMLYLEY 118 (660)
T ss_pred HHHHhhhcc--HhHHHHHHHH
Confidence 988877554 5556655543
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.79 E-value=1.4 Score=40.06 Aligned_cols=121 Identities=19% Similarity=0.271 Sum_probs=84.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccC
Q 046257 519 SALVTMYSKKGNIESASEVFKRQRK---RDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGITFIGVITACTHAG 595 (838)
Q Consensus 519 ~~li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g 595 (838)
..+|..+.+.+.......+++.+.. .+....|.++..|++.. .++.++.++. .++......++..|...+
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAK 83 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcC
Confidence 3456666677777777777776652 34567888888888764 4555555553 245566777899999999
Q ss_pred CHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHhc-CCHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 046257 596 LVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRA-GMLEKAMDIINRMPFAASATVWRTVLAAC 659 (838)
Q Consensus 596 ~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~-G~~~~A~~~~~~m~~~~~~~~w~~ll~~c 659 (838)
.++++..++..+. . |...++.+... ++.+.|.+++.+- .+...|..++..|
T Consensus 84 l~~~~~~l~~k~~-~---------~~~Al~~~l~~~~d~~~a~~~~~~~---~~~~lw~~~~~~~ 135 (140)
T smart00299 84 LYEEAVELYKKDG-N---------FKDAIVTLIEHLGNYEKAIEYFVKQ---NNPELWAEVLKAL 135 (140)
T ss_pred cHHHHHHHHHhhc-C---------HHHHHHHHHHcccCHHHHHHHHHhC---CCHHHHHHHHHHH
Confidence 9999999987763 1 44455555555 8999999999873 3556787777664
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.23 Score=53.14 Aligned_cols=76 Identities=14% Similarity=0.202 Sum_probs=38.6
Q ss_pred chhHHHHHHHHHhcCCchHHHHHHHHHhhCCCccCC-------ceeEEEECCEEEEEe-eCCCCCCChHHHHHHHHHHHH
Q 046257 669 SAIYVLLSNMYAATGHWQERARVRKLMNDRKVKKEA-------GYSWIEVKNKTYSFL-AGDISHPQSNQIYSKLEELST 740 (838)
Q Consensus 669 ~~~y~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~~~-------~~s~i~~~~~~~~f~-~~~~~~~~~~~i~~~l~~l~~ 740 (838)
.+...+++.+|....+-+++ ++-+..++..+-..+ -.+..++.+..+.++ +|+.. ...+-....+...+
T Consensus 246 igav~~f~~L~~~e~k~~e~-q~~ri~Ree~L~rL~v~l~~~~~v~l~~LRg~~RvvIvAG~~e--~v~~al~~ae~~r~ 322 (453)
T PLN03098 246 IGGIVAFVSLFLWENKKEEE-QMSQITRDETLSRLPVRLSTNRIVELVQLRDITRPVILAGTKE--SVTLAMQKAERYRT 322 (453)
T ss_pred HHHHHHHHHHHHHHhcccHH-HHHHHHhhhhhccceEeccCCCEEeHHHhcCcceEEEEECCHH--HHHHHHHHhHHHHH
Confidence 34455667777655554444 333344443322111 123334455555554 34432 23444566666777
Q ss_pred HHHHcCc
Q 046257 741 RLKDAGY 747 (838)
Q Consensus 741 ~~~~~g~ 747 (838)
++.+.|+
T Consensus 323 ~L~~r~V 329 (453)
T PLN03098 323 ELLKRGV 329 (453)
T ss_pred HHHHcCc
Confidence 8888875
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=94.56 E-value=0.46 Score=41.97 Aligned_cols=98 Identities=16% Similarity=0.296 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCCchHHHHHH
Q 046257 546 LVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVD 625 (838)
Q Consensus 546 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~ 625 (838)
..++.++|.++++.|+.+....+.+..= |+.++...- .+. ......+.|+.....+++.
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~~~---------~~~----------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGKKK---------EGD----------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCccc---------cCc----------cCCCCCCCCCHHHHHHHHH
Confidence 4456666666666666666665554432 222221000 000 1123345567777777777
Q ss_pred HHHhcCCHHHHHHHHhhC----CCCCCHHHHHHHHHHHHHhcc
Q 046257 626 LYSRAGMLEKAMDIINRM----PFAASATVWRTVLAACRLISL 664 (838)
Q Consensus 626 ~l~r~G~~~~A~~~~~~m----~~~~~~~~w~~ll~~c~~~~l 664 (838)
+|+..|++..|.++++.. ++.-+...|..|+.=|-++.-
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s~ 103 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVLSS 103 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Confidence 777777777777776654 444446678777777654443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.54 E-value=7 Score=40.79 Aligned_cols=221 Identities=17% Similarity=0.157 Sum_probs=138.5
Q ss_pred HcCCHHHHHHHHHhcCCC---CcchHHHHHHHHHhcCCchHHHHHHHHhhcC-CCCCCHh--hHHHHHHH--hcCChhhH
Q 046257 425 KKGILDEAAKVFELIDEK---DIVAWSAMLAGYAQIGDTEGAVKIYRQLTSE-GVKPNEF--TFSSVINA--CTAPSAAV 496 (838)
Q Consensus 425 ~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~--t~~~ll~a--~~~~~~~~ 496 (838)
+.|..+.|+..-+..-+. -.-.|.+.+...+..|+++.|+++++.-+.. -+.++.. .-..+|.+ -+..+.+.
T Consensus 166 r~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp 245 (531)
T COG3898 166 RLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADP 245 (531)
T ss_pred hcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCCh
Confidence 566666666666555432 2245777888888888888888888776553 2344432 22233332 22222444
Q ss_pred HHHHHHHHHHHHhcCCCchhHH-HHHHHHHHhcCCHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 046257 497 EQGKQFHACSIKAKLNNALCVS-SALVTMYSKKGNIESASEVFKRQR--KRDLVSWNSMICGYAQHGHTKKALEVFKEMR 573 (838)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~~~-~~li~~y~k~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 573 (838)
..++..-....|. .||..-. ..-...|.+.|++.++-++++.+. +|....|... .+++.|+ .++.-+++..
T Consensus 246 ~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY--~~ar~gd--ta~dRlkRa~ 319 (531)
T COG3898 246 ASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLY--VRARSGD--TALDRLKRAK 319 (531)
T ss_pred HHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHH--HHhcCCC--cHHHHHHHHH
Confidence 5555554444443 3332221 122456889999999999999887 4555544332 3445554 4444444443
Q ss_pred H-cCCCCCh-hHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHhc-CCHHHHHHHHhhCCCCCCHH
Q 046257 574 R-QDLEFDG-ITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRA-GMLEKAMDIINRMPFAASAT 650 (838)
Q Consensus 574 ~-~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~-G~~~~A~~~~~~m~~~~~~~ 650 (838)
. ..++||+ .+...+..+-...|++..|..--+... ...|....|..|.|.-.-. |+-+++...+-+.--.|-..
T Consensus 320 ~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~---r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdP 396 (531)
T COG3898 320 KLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAA---REAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDP 396 (531)
T ss_pred HHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHh---hhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCC
Confidence 2 1377875 567778888888999988887766665 4578889999999887654 99999999998764444444
Q ss_pred HHHH
Q 046257 651 VWRT 654 (838)
Q Consensus 651 ~w~~ 654 (838)
.|.+
T Consensus 397 aW~a 400 (531)
T COG3898 397 AWTA 400 (531)
T ss_pred cccc
Confidence 4543
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=94.16 E-value=0.19 Score=46.09 Aligned_cols=65 Identities=23% Similarity=0.327 Sum_probs=37.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH-----cCCCCChhH
Q 046257 519 SALVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRR-----QDLEFDGIT 583 (838)
Q Consensus 519 ~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~pd~~t 583 (838)
..++..+...|++++|..+.+.+. +-|...|..+|.+|...|+..+|++.|+++.. .|+.|+..|
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 345556666777777777776655 33566777777777777777777777766542 366665543
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.16 E-value=0.94 Score=45.64 Aligned_cols=96 Identities=13% Similarity=0.066 Sum_probs=65.3
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHcCCCCChhHHH
Q 046257 512 NNALCVSSALVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHG---HTKKALEVFKEMRRQDLEFDGITFI 585 (838)
Q Consensus 512 ~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~g~~pd~~t~~ 585 (838)
+.|..-|--|...|...|+.+.|..-|.+.. .+|...+..+..++.... ...++.++|++++. .+|+.++-.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~--~D~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALA--LDPANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh--cCCccHHHH
Confidence 4567777777788888888888887776543 556666666666544332 34567778888877 567665433
Q ss_pred -HHHHHHhccCCHHHHHHHHHHHHh
Q 046257 586 -GVITACTHAGLVDEGQQYFDIMVN 609 (838)
Q Consensus 586 -~ll~a~~~~g~~~~a~~~~~~m~~ 609 (838)
.|..++...|++.+|...|+.|.+
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~ 255 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLD 255 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHh
Confidence 344467777888888888887763
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=94.02 E-value=0.1 Score=41.81 Aligned_cols=62 Identities=18% Similarity=0.267 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHc--CCC---CC-hhHHHHHHHHHhccCCHHHHHHHHHHHH
Q 046257 547 VSWNSMICGYAQHGHTKKALEVFKEMRRQ--DLE---FD-GITFIGVITACTHAGLVDEGQQYFDIMV 608 (838)
Q Consensus 547 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~---pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 608 (838)
.+|+.+...|...|++++|++.|++..+. -.. |+ ..++..+...+...|++++|.+++++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35566666666667777776666665542 011 12 2456666667777777777777776654
|
... |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=93.98 E-value=6.3 Score=41.85 Aligned_cols=169 Identities=13% Similarity=0.086 Sum_probs=111.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCC---CH----HHHHHHHHHHHH---cCChHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 046257 520 ALVTMYSKKGNIESASEVFKRQRKR---DL----VSWNSMICGYAQ---HGHTKKALEVFKEMRRQDLEFDGITFIGVIT 589 (838)
Q Consensus 520 ~li~~y~k~g~~~~A~~~f~~~~~~---~~----~~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~ 589 (838)
.|+-.|-...+++.-.++++.+... ++ ..--...-++.+ .|+.++|++++..+....-.++..||..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 3444688899999999999988733 21 112233445556 7999999999999777666777778777665
Q ss_pred HHh----c-----cCCHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 046257 590 ACT----H-----AGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACR 660 (838)
Q Consensus 590 a~~----~-----~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~ 660 (838)
.|- . ....++|...+.+. +.+.|+..+--.++-++..+|...+...-+++. .+.++++++.-.
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kg---Fe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i-----~~~l~~llg~kg 297 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKG---FEIEPDYYSGINAATLLMLAGHDFETSEELRKI-----GVKLSSLLGRKG 297 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHH---HcCCccccchHHHHHHHHHcCCcccchHHHHHH-----HHHHHHHHHhhc
Confidence 542 1 22467788877754 356676665555667777777755555444443 245666665421
Q ss_pred HhccCC-CCchhHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 046257 661 LISLQP-HDSAIYVLLSNMYAATGHWQERARVRKLMNDR 698 (838)
Q Consensus 661 ~~~l~P-~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~~ 698 (838)
.+++ ++--.+..+..++.-.|+.++|.+..+.|...
T Consensus 298 --~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 298 --SLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred --cccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 1222 13334456777888899999999999999754
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.97 E-value=0.37 Score=47.46 Aligned_cols=111 Identities=18% Similarity=0.281 Sum_probs=86.1
Q ss_pred HHHHHHHhcC--CCCHHHHHHHHHHHHHc-----CChHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCC---------
Q 046257 533 SASEVFKRQR--KRDLVSWNSMICGYAQH-----GHTKKALEVFKEMRRQDLEFDGITFIGVITACTHAGL--------- 596 (838)
Q Consensus 533 ~A~~~f~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~--------- 596 (838)
..++.|.... ++|-.+|-+++..+..+ +..+-....++.|.+-|+.-|-.+|..||+.+-+...
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 3466777777 77888999999888654 5667777788999999999999999999987755442
Q ss_pred -------HHHHHHHHHHHHhcCCccCCCchHHHHHHHHHhcCCH-HHHHHHHhhCC
Q 046257 597 -------VDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGML-EKAMDIINRMP 644 (838)
Q Consensus 597 -------~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~-~~A~~~~~~m~ 644 (838)
-+=|..++++|. .+|+.||.++-..++.+++|.|.. .+-..++--||
T Consensus 132 F~HYP~QQ~C~I~vLeqME-~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQME-WHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HhhCchhhhHHHHHHHHHH-HcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 234778999996 889999999999999999999864 34444544454
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=93.85 E-value=9.8 Score=39.88 Aligned_cols=47 Identities=19% Similarity=0.230 Sum_probs=25.8
Q ss_pred HHHHHcCCChHHHHHHHHhcccCCCeeehHHHHHHHHHcCChHHHHHH
Q 046257 322 MVAYSKCGKMEDASKIFSMMREMKDVVSWTAMISGHLQNGAIDLAVNF 369 (838)
Q Consensus 322 i~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l 369 (838)
|.-+...|....|.++..+.. .||-.-|-..|.+|+..+++++-..+
T Consensus 184 i~~li~~~~~k~A~kl~k~Fk-v~dkrfw~lki~aLa~~~~w~eL~~f 230 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEFK-VPDKRFWWLKIKALAENKDWDELEKF 230 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHcC-CcHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 334444555555555555555 55555555556666666665554443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=93.83 E-value=0.12 Score=41.31 Aligned_cols=57 Identities=19% Similarity=0.313 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcC------C---CC-HHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 046257 517 VSSALVTMYSKKGNIESASEVFKRQR------K---RD-LVSWNSMICGYAQHGHTKKALEVFKEMR 573 (838)
Q Consensus 517 ~~~~li~~y~k~g~~~~A~~~f~~~~------~---~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~ 573 (838)
+++.+...|...|++++|++.|++.. . ++ ..+++.|...|...|++++|++.+++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44555566666666666666555432 1 11 2445556666666666666666665544
|
... |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.63 E-value=0.56 Score=46.22 Aligned_cols=99 Identities=11% Similarity=0.024 Sum_probs=66.4
Q ss_pred hhhHHhhccCC--CCCcccHHHHHHHHHc-----cCChHHHHHHHHHHHHcCCCCCcccHHHHHHHhccCCCh-------
Q 046257 29 KKDQSLFDRSP--QRNFVEYNRLLFEYCR-----DSLHQEALNLFLGIRRLGLPLFGSTLSSVLKTCGCLFDH------- 94 (838)
Q Consensus 29 ~~a~~~f~~~~--~~~~~~~~~li~~~~~-----~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~------- 94 (838)
-.-++.|...+ .++-.+|-+.+..+.. .++.+--...++.|.+-|+.-|..+|..||..+-+-.-.
T Consensus 51 v~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~ 130 (406)
T KOG3941|consen 51 VHVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQK 130 (406)
T ss_pred cchhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHH
Confidence 34567788887 6787888887777653 456666667788899999999999999998887543211
Q ss_pred ---------hhHHHHHHHHHHhCCCCChhHHHHHHHHHHhCC
Q 046257 95 ---------VFGRQVHCECVKSGFARDVNVSTSLVDLYMRTN 127 (838)
Q Consensus 95 ---------~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g 127 (838)
.-+..++++|...|+-||-.+-..|++++.+.+
T Consensus 131 ~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~ 172 (406)
T KOG3941|consen 131 VFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWN 172 (406)
T ss_pred HHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccc
Confidence 114455555555566666655555555555544
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=93.58 E-value=0.59 Score=41.30 Aligned_cols=98 Identities=12% Similarity=0.131 Sum_probs=71.6
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHhc
Q 046257 514 ALCVSSALVTMYSKKGNIESASEVFKRQRKRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGITFIGVITACTH 593 (838)
Q Consensus 514 ~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~ 593 (838)
|..++.+++-++++.|+++....+.+..-.-|+ .+-...+. --......|+..+..+++.+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~-------~~~~~~~~---------~~~~spl~Pt~~lL~AIv~sf~~ 64 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDV-------NGKKKEGD---------YPPSSPLYPTSRLLIAIVHSFGY 64 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCC-------CCccccCc---------cCCCCCCCCCHHHHHHHHHHHHh
Confidence 345778899999999999999999876542221 11111111 11233477899999999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCccCCCchHHHHHHHH
Q 046257 594 AGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLY 627 (838)
Q Consensus 594 ~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l 627 (838)
.|++..|.++.+...+.|+++-+...|..|..-.
T Consensus 65 n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 65 NGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred cccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 9999999999999998999776777787776433
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=92.98 E-value=3.2 Score=44.75 Aligned_cols=110 Identities=15% Similarity=0.168 Sum_probs=77.7
Q ss_pred ChHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCC-chHHHHHHHHHhcCCHHHHHHH
Q 046257 561 HTKKALEVFKEMRRQDLEFDGITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTM-EHYSCMVDLYSRAGMLEKAMDI 639 (838)
Q Consensus 561 ~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~y~~lv~~l~r~G~~~~A~~~ 639 (838)
...+|.++-++..+.+ .-|......+..+....|+.+.|...|++.. .+.|+. ..|......+.-+|+.++|.+.
T Consensus 319 ~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~---~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~ 394 (458)
T PRK11906 319 AAQKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAK---IHSTDIASLYYYRALVHFHNEKIEEARIC 394 (458)
T ss_pred HHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHh---hcCCccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4567888888888843 2356666667777777888999999999886 567875 4566666777889999999999
Q ss_pred HhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHH--HHHHHhcCCchHHHHHHH
Q 046257 640 INRMPFAASATVWRTVLAACRLISLQPHDSAIYVLL--SNMYAATGHWQERARVRK 693 (838)
Q Consensus 640 ~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l--~~~y~~~g~~~~a~~~~~ 693 (838)
+++. ++++|.-..+-+.- .++|...+ .++|.+++-
T Consensus 395 i~~a------------------lrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 431 (458)
T PRK11906 395 IDKS------------------LQLEPRRRKAVVIKECVDMYVPNP-LKNNIKLYY 431 (458)
T ss_pred HHHH------------------hccCchhhHHHHHHHHHHHHcCCc-hhhhHHHHh
Confidence 9986 56777554444433 33566654 566666654
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=92.90 E-value=1.6 Score=47.05 Aligned_cols=130 Identities=8% Similarity=0.071 Sum_probs=92.6
Q ss_pred HHH--HHHHHHHHHcC-----ChHHHHHHHHHHH-HcCCCCChh-HHHHHHHHHhc---------cCCHHHHHHHHHHHH
Q 046257 547 VSW--NSMICGYAQHG-----HTKKALEVFKEMR-RQDLEFDGI-TFIGVITACTH---------AGLVDEGQQYFDIMV 608 (838)
Q Consensus 547 ~~~--~~li~~~~~~g-----~~~~A~~l~~~m~-~~g~~pd~~-t~~~ll~a~~~---------~g~~~~a~~~~~~m~ 608 (838)
..| ..++.|....- ..+.|+.+|.+.. .+.+.|+.. .|..+..++.. .....+|.+.-+..+
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 566 66666655421 3567889999998 223788753 34333332211 224556777777666
Q ss_pred hcCCccC-CCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchH
Q 046257 609 NEHHIYP-TMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQE 687 (838)
Q Consensus 609 ~~~~~~p-~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~ 687 (838)
.+.| |......+..+++-.|+++.|...|++. ++++|+.+.+|...+.+..-+|+.++
T Consensus 332 ---eld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA------------------~~L~Pn~A~~~~~~~~~~~~~G~~~~ 390 (458)
T PRK11906 332 ---DITTVDGKILAIMGLITGLSGQAKVSHILFEQA------------------KIHSTDIASLYYYRALVHFHNEKIEE 390 (458)
T ss_pred ---hcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHH------------------hhcCCccHHHHHHHHHHHHHcCCHHH
Confidence 3334 4555666777778888999999999988 78999999999999999999999999
Q ss_pred HHHHHHHHhh
Q 046257 688 RARVRKLMND 697 (838)
Q Consensus 688 a~~~~~~m~~ 697 (838)
|.+..++..+
T Consensus 391 a~~~i~~alr 400 (458)
T PRK11906 391 ARICIDKSLQ 400 (458)
T ss_pred HHHHHHHHhc
Confidence 9998887443
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=92.87 E-value=8 Score=37.69 Aligned_cols=62 Identities=13% Similarity=-0.123 Sum_probs=38.1
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHcCC--CCCcccHHHHHHHhccCCChhhHHHHHHHHHHhCC
Q 046257 48 RLLFEYCRDSLHQEALNLFLGIRRLGL--PLFGSTLSSVLKTCGCLFDHVFGRQVHCECVKSGF 109 (838)
Q Consensus 48 ~li~~~~~~g~~~~a~~~~~~m~~~g~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~ 109 (838)
.....+...|++.+|+..|+.+...-. +--......+..++-+.|+...|...++..++.-+
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP 73 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYP 73 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence 344556678888888888888876521 11223345566667777777777777777766543
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.80 E-value=10 Score=36.94 Aligned_cols=159 Identities=16% Similarity=0.205 Sum_probs=105.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC-HHHHHHHHH-HHHHcCChHHHHHHHHHHHHcCCCC----ChhHHHHH
Q 046257 516 CVSSALVTMYSKKGNIESASEVFKRQRK--RD-LVSWNSMIC-GYAQHGHTKKALEVFKEMRRQDLEF----DGITFIGV 587 (838)
Q Consensus 516 ~~~~~li~~y~k~g~~~~A~~~f~~~~~--~~-~~~~~~li~-~~~~~g~~~~A~~l~~~m~~~g~~p----d~~t~~~l 587 (838)
..+..+...+...++++.+.+.+..... ++ ...+..... .+...|+.++|...|++... ..| ....+...
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~ 173 (291)
T COG0457 96 EALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALE--LDPELNELAEALLAL 173 (291)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHh
Confidence 3344445556666677777777776652 22 223333333 68888999999999998855 444 22334444
Q ss_pred HHHHhccCCHHHHHHHHHHHHhcCCccCC--CchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccC
Q 046257 588 ITACTHAGLVDEGQQYFDIMVNEHHIYPT--MEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQ 665 (838)
Q Consensus 588 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~ 665 (838)
...+...+..+++...+...... .|+ ...+..+...+...|.+++|...+... ++..
T Consensus 174 ~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~------------------~~~~ 232 (291)
T COG0457 174 GALLEALGRYEEALELLEKALKL---NPDDDAEALLNLGLLYLKLGKYEEALEYYEKA------------------LELD 232 (291)
T ss_pred hhHHHHhcCHHHHHHHHHHHHhh---CcccchHHHHHhhHHHHHcccHHHHHHHHHHH------------------HhhC
Confidence 44466788889999888887733 233 456777778888888888888888876 4555
Q ss_pred CCCchhHHHHHHHHHhcCCchHHHHHHHHHhh
Q 046257 666 PHDSAIYVLLSNMYAATGHWQERARVRKLMND 697 (838)
Q Consensus 666 P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~ 697 (838)
|.....+..++..+...|.++++...+.....
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 233 PDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 54455666677777777778888877776654
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=92.79 E-value=5.6 Score=35.94 Aligned_cols=84 Identities=13% Similarity=0.067 Sum_probs=45.0
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHHhcccCCCeeehHHHHHHHHHcCChHH
Q 046257 286 VIKLCATTKELRLARQLHSQVLKNGIDFDHNIRTGLMVAYSKCGKMEDASKIFSMMREMKDVVSWTAMISGHLQNGAIDL 365 (838)
Q Consensus 286 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~li~~~~~~g~~~~ 365 (838)
++..+...+.......+++.+.+.+ ..+....+.++..|++.+ ..+....+.. ..+......++..|.+.+.+++
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~---~~~~yd~~~~~~~c~~~~l~~~ 87 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN---KSNHYDIEKVGKLCEKAKLYEE 87 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh---ccccCCHHHHHHHHHHcCcHHH
Confidence 3444444455555555555555554 245556666666666553 2333334332 1233444456666666666666
Q ss_pred HHHHHHHhh
Q 046257 366 AVNFFCQMT 374 (838)
Q Consensus 366 A~~l~~~m~ 374 (838)
+.-++.++.
T Consensus 88 ~~~l~~k~~ 96 (140)
T smart00299 88 AVELYKKDG 96 (140)
T ss_pred HHHHHHhhc
Confidence 666666653
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.72 E-value=15 Score=38.79 Aligned_cols=160 Identities=14% Similarity=0.086 Sum_probs=99.4
Q ss_pred HHHHcCCHHHHHHHHHhcCCCCcc-hHHHHHHHH--HhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCChhhHHH
Q 046257 422 AYVKKGILDEAAKVFELIDEKDIV-AWSAMLAGY--AQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQ 498 (838)
Q Consensus 422 ~y~~~g~~~~A~~~f~~~~~~~~~-~~~~li~~~--~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 498 (838)
.+.-.|++++|...--.+..-|.. .+...+.+. --.++.+.|...|++.+. +.|+...-.+.-..+
T Consensus 178 cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~--ldpdh~~sk~~~~~~--------- 246 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALR--LDPDHQKSKSASMMP--------- 246 (486)
T ss_pred hhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhc--cChhhhhHHhHhhhH---------
Confidence 344567777777766555543332 233333333 336778888888888765 456655433222111
Q ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 046257 499 GKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQR-------KRDLVSWNSMICGYAQHGHTKKALEVFKE 571 (838)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 571 (838)
......... .+...|.|++..|.+.+.+.. +++...|........+.|+.++|+.--++
T Consensus 247 --k~le~~k~~------------gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~ 312 (486)
T KOG0550|consen 247 --KKLEVKKER------------GNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNE 312 (486)
T ss_pred --HHHHHHHhh------------hhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhh
Confidence 111111111 234678999999999998765 23455677777788899999999999888
Q ss_pred HHHcCCCCChh-HHHHHHHHHhccCCHHHHHHHHHHHH
Q 046257 572 MRRQDLEFDGI-TFIGVITACTHAGLVDEGQQYFDIMV 608 (838)
Q Consensus 572 m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~ 608 (838)
... +.|.-+ .+..-..++...+.+++|.+.|+...
T Consensus 313 Al~--iD~syikall~ra~c~l~le~~e~AV~d~~~a~ 348 (486)
T KOG0550|consen 313 ALK--IDSSYIKALLRRANCHLALEKWEEAVEDYEKAM 348 (486)
T ss_pred hhh--cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 876 444321 23333345556788999999998876
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=92.60 E-value=4.3 Score=39.55 Aligned_cols=142 Identities=14% Similarity=0.203 Sum_probs=83.7
Q ss_pred HHhcCCHHHHHHHHHhcCC--C----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh--hHHHHHHHHHhc---
Q 046257 525 YSKKGNIESASEVFKRQRK--R----DLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDG--ITFIGVITACTH--- 593 (838)
Q Consensus 525 y~k~g~~~~A~~~f~~~~~--~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~--~t~~~ll~a~~~--- 593 (838)
+...|++++|.+.|+.+.. | -....-.++.+|-+.|++++|+..|++.++ .-|++ ..+...+.+.+.
T Consensus 15 ~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~--~yP~~~~~~~A~Y~~g~~~~~~ 92 (203)
T PF13525_consen 15 ALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK--LYPNSPKADYALYMLGLSYYKQ 92 (203)
T ss_dssp HHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH--H-TT-TTHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCcchhhHHHHHHHHHHHh
Confidence 4567888888888887761 2 123455667788888888888888888877 34553 222222222221
Q ss_pred ----------cCCHHHHHHHHHHHHhcCCccCCCchH------------------HHHHHHHHhcCCHHHHHHHHhhCCC
Q 046257 594 ----------AGLVDEGQQYFDIMVNEHHIYPTMEHY------------------SCMVDLYSRAGMLEKAMDIINRMPF 645 (838)
Q Consensus 594 ----------~g~~~~a~~~~~~m~~~~~~~p~~~~y------------------~~lv~~l~r~G~~~~A~~~~~~m~~ 645 (838)
.+...+|...|+..++.+ |+.... -.+.+.|.+.|.+..|..-++.+
T Consensus 93 ~~~~~~~~~D~~~~~~A~~~~~~li~~y---P~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v-- 167 (203)
T PF13525_consen 93 IPGILRSDRDQTSTRKAIEEFEELIKRY---PNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYV-- 167 (203)
T ss_dssp HHHHH-TT---HHHHHHHHHHHHHHHH----TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHH--
T ss_pred CccchhcccChHHHHHHHHHHHHHHHHC---cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHH--
Confidence 223456777888777665 443321 12456777888887777776665
Q ss_pred CCCHHHHHHHHHHHHHhccCCCC---chhHHHHHHHHHhcCCchHHH
Q 046257 646 AASATVWRTVLAACRLISLQPHD---SAIYVLLSNMYAATGHWQERA 689 (838)
Q Consensus 646 ~~~~~~w~~ll~~c~~~~l~P~~---~~~y~~l~~~y~~~g~~~~a~ 689 (838)
++--|+. ..+...|...|.+.|..+.+.
T Consensus 168 ----------------~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 168 ----------------IENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp ----------------HHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred ----------------HHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 3333432 345677888899999888444
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.55 E-value=1 Score=47.24 Aligned_cols=138 Identities=12% Similarity=0.167 Sum_probs=83.8
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHH
Q 046257 522 VTMYSKKGNIESASEVFKRQRKRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGITFIGVITACTHAGLVDEGQ 601 (838)
Q Consensus 522 i~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~ 601 (838)
.+.|.|.|++..|...|++... | + -|...-+.++ .... ...-..+++.+.-++.+.+.+.+|.
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~-----~---l-~~~~~~~~ee-------~~~~-~~~k~~~~lNlA~c~lKl~~~~~Ai 277 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVS-----F---L-EYRRSFDEEE-------QKKA-EALKLACHLNLAACYLKLKEYKEAI 277 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHH-----H---h-hccccCCHHH-------HHHH-HHHHHHHhhHHHHHHHhhhhHHHHH
Confidence 4578899999999988776420 0 0 0000001111 1110 0111234556666667777777777
Q ss_pred HHHHHHHhcCCccC-CCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHH
Q 046257 602 QYFDIMVNEHHIYP-TMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYA 680 (838)
Q Consensus 602 ~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~ 680 (838)
+..+.... +.| |+...--=..+|.-.|+++.|+..|+++ ++++|+|-.+-..|+.+-.
T Consensus 278 ~~c~kvLe---~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka------------------~k~~P~Nka~~~el~~l~~ 336 (397)
T KOG0543|consen 278 ESCNKVLE---LDPNNVKALYRRGQALLALGEYDLARDDFQKA------------------LKLEPSNKAARAELIKLKQ 336 (397)
T ss_pred HHHHHHHh---cCCCchhHHHHHHHHHHhhccHHHHHHHHHHH------------------HHhCCCcHHHHHHHHHHHH
Confidence 77776652 223 3333333356777788889999998887 7888888888888887777
Q ss_pred hcCCchHH-HHHHHHHhh
Q 046257 681 ATGHWQER-ARVRKLMND 697 (838)
Q Consensus 681 ~~g~~~~a-~~~~~~m~~ 697 (838)
+..+..+. .++|..|=.
T Consensus 337 k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 337 KIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 66666555 677777743
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=92.50 E-value=0.75 Score=42.13 Aligned_cols=84 Identities=10% Similarity=0.017 Sum_probs=65.8
Q ss_pred HHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHH
Q 046257 525 YSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGITFIGVITACTHAGLVDEGQ 601 (838)
Q Consensus 525 y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~ 601 (838)
+-..|++++|+.+|.-+. .-|..-|..|..+|-..+++++|+..|......+ .-|...+.....++...|+.+.|+
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHHHH
Confidence 346799999999998665 3466778888888889999999999998877743 234555666777788889999999
Q ss_pred HHHHHHHh
Q 046257 602 QYFDIMVN 609 (838)
Q Consensus 602 ~~~~~m~~ 609 (838)
..|+..+.
T Consensus 126 ~~f~~a~~ 133 (165)
T PRK15331 126 QCFELVNE 133 (165)
T ss_pred HHHHHHHh
Confidence 99988873
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=92.44 E-value=0.98 Score=40.40 Aligned_cols=67 Identities=16% Similarity=0.231 Sum_probs=50.7
Q ss_pred HhcCCHHHHHHHHHhcCCC------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh--hHHHHHHHHHhcc
Q 046257 526 SKKGNIESASEVFKRQRKR------DLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDG--ITFIGVITACTHA 594 (838)
Q Consensus 526 ~k~g~~~~A~~~f~~~~~~------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~--~t~~~ll~a~~~~ 594 (838)
.+.|++++|.+.|+.+..+ ....--.++.+|.+.|++++|+..+++.++ +.|++ +-|.....++++-
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFir--LhP~hp~vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIR--LHPTHPNVDYAYYMRGLSYY 95 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCCCccHHHHHHHHHHH
Confidence 4679999999999988732 234455688899999999999999999999 67764 5566666665543
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.26 E-value=4.9 Score=40.55 Aligned_cols=143 Identities=8% Similarity=0.034 Sum_probs=84.8
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHHHhcC
Q 046257 533 SASEVFKRQRKRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITACTHAGLVDEGQQYFDIMVNEH 611 (838)
Q Consensus 533 ~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 611 (838)
.-.+.+++...+....--.........|+..+|..+|...... .|+ ...-..+..++...|++++|..++..+-.+.
T Consensus 121 qlr~~ld~~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~ 198 (304)
T COG3118 121 QLRQFLDKVLPAEEEEALAEAKELIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQA 198 (304)
T ss_pred HHHHHHHHhcChHHHHHHHHhhhhhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccc
Confidence 3444555555442222223334556677777888888777773 333 3445566667777777777777776653111
Q ss_pred CccCCCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHH
Q 046257 612 HIYPTMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARV 691 (838)
Q Consensus 612 ~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~ 691 (838)
...-+-. +...++++.++...|+......- +.-+|+|...-+.|+..|-..|+.++|.+.
T Consensus 199 ----~~~~~~~----------l~a~i~ll~qaa~~~~~~~l~~~------~aadPdd~~aa~~lA~~~~~~g~~e~Ale~ 258 (304)
T COG3118 199 ----QDKAAHG----------LQAQIELLEQAAATPEIQDLQRR------LAADPDDVEAALALADQLHLVGRNEAALEH 258 (304)
T ss_pred ----hhhHHHH----------HHHHHHHHHHHhcCCCHHHHHHH------HHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 1111111 12224444444434444333333 344899999999999999999999999887
Q ss_pred HHHHhh
Q 046257 692 RKLMND 697 (838)
Q Consensus 692 ~~~m~~ 697 (838)
+=.+..
T Consensus 259 Ll~~l~ 264 (304)
T COG3118 259 LLALLR 264 (304)
T ss_pred HHHHHH
Confidence 766643
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=91.68 E-value=1.5 Score=43.59 Aligned_cols=93 Identities=12% Similarity=0.143 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh----hHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCC-chHHH
Q 046257 548 SWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDG----ITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTM-EHYSC 622 (838)
Q Consensus 548 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~y~~ 622 (838)
.|+.-+. +.+.|++.+|...|...++. -|+. ..+-.|..++...|++++|..+|..+.++++-.|.. +.+--
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~--YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKK--YPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHc--CCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 3555443 34567788888888888874 3432 245567788888888888888888888887766654 66777
Q ss_pred HHHHHHhcCCHHHHHHHHhhC
Q 046257 623 MVDLYSRAGMLEKAMDIINRM 643 (838)
Q Consensus 623 lv~~l~r~G~~~~A~~~~~~m 643 (838)
|...+++.|+.++|...+++.
T Consensus 221 lg~~~~~l~~~d~A~atl~qv 241 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQV 241 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHH
Confidence 788888888888888888776
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=91.41 E-value=19 Score=37.08 Aligned_cols=216 Identities=14% Similarity=0.077 Sum_probs=120.8
Q ss_pred HHcCCHHHHHHHHHhcCCC----Cc--------chHHHHHHHHHhcCCchHHHHHHHHhhcC--------CCCCCH----
Q 046257 424 VKKGILDEAAKVFELIDEK----DI--------VAWSAMLAGYAQIGDTEGAVKIYRQLTSE--------GVKPNE---- 479 (838)
Q Consensus 424 ~~~g~~~~A~~~f~~~~~~----~~--------~~~~~li~~~~~~g~~~~A~~l~~~m~~~--------g~~p~~---- 479 (838)
.+.|+.+.|..++.+.... +. ..||.-...+.+..++++|..++++..+- ...|+.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 3678888888888766531 11 34565555555554788877776664332 223333
Q ss_pred -hhHHHHHHHhcCC--hhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC-CC--CHHHHHHHH
Q 046257 480 -FTFSSVINACTAP--SAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQR-KR--DLVSWNSMI 553 (838)
Q Consensus 480 -~t~~~ll~a~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~-~~--~~~~~~~li 553 (838)
.++..+..++-.. ....+.+..+...+.. .++..+.++---++...+.++.+.+.+++.+|. .. ....+...+
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~-e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l 162 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLES-EYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH-hCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHH
Confidence 2444555555444 1234445555555533 333344555455666777889999999998886 22 335566666
Q ss_pred HHH---HHcCChHHHHHHHHHHHHcCCCCChh--H---HHHHHHHHhccC------CHHHHHHHHHHHHhcCCccCCCch
Q 046257 554 CGY---AQHGHTKKALEVFKEMRRQDLEFDGI--T---FIGVITACTHAG------LVDEGQQYFDIMVNEHHIYPTMEH 619 (838)
Q Consensus 554 ~~~---~~~g~~~~A~~l~~~m~~~g~~pd~~--t---~~~ll~a~~~~g------~~~~a~~~~~~m~~~~~~~p~~~~ 619 (838)
..+ ..+ ....|...+.++...-+.|... . +...+-.+...+ .++...++++...+..+-+.+..+
T Consensus 163 ~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~ 241 (278)
T PF08631_consen 163 HHIKQLAEK-SPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEA 241 (278)
T ss_pred HHHHHHHhh-CcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 555 333 3566777777777665666542 1 111122222222 255666666644433333334444
Q ss_pred HHHH-------HHHHHhcCCHHHHHHHHh
Q 046257 620 YSCM-------VDLYSRAGMLEKAMDIIN 641 (838)
Q Consensus 620 y~~l-------v~~l~r~G~~~~A~~~~~ 641 (838)
-.++ +.-..+++++++|.++++
T Consensus 242 ~~a~~~LLW~~~~~~~~~k~y~~A~~w~~ 270 (278)
T PF08631_consen 242 ASAIHTLLWNKGKKHYKAKNYDEAIEWYE 270 (278)
T ss_pred HHHHHHHHHHHHHHHHhhcCHHHHHHHHH
Confidence 3333 344667889999999987
|
It is also involved in sporulation []. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=91.15 E-value=2.6 Score=43.50 Aligned_cols=139 Identities=16% Similarity=0.208 Sum_probs=84.5
Q ss_pred HhcCCHHHHHHHHHhcC------CCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHHc--------CCCCCh----
Q 046257 526 SKKGNIESASEVFKRQR------KRD------LVSWNSMICGYAQHGHTKKALEVFKEMRRQ--------DLEFDG---- 581 (838)
Q Consensus 526 ~k~g~~~~A~~~f~~~~------~~~------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--------g~~pd~---- 581 (838)
.+.|+++.|..++.+.. .|+ ...||.-...+.+..++++|...+++..+- ...|+.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 35677777777776554 222 134555555544443788877777665442 233443
Q ss_pred -hHHHHHHHHHhccCC---HHHHHHHHHHHHhcCCccCCCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCC--HHHHHHH
Q 046257 582 -ITFIGVITACTHAGL---VDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDIINRMPFAAS--ATVWRTV 655 (838)
Q Consensus 582 -~t~~~ll~a~~~~g~---~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~--~~~w~~l 655 (838)
.++..++.++...+. +++|.++++.+.++++-+| ..+---++.+.+.++.+++.+.+.+|-...+ ...|...
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~--~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~ 161 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKP--EVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSI 161 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCc--HHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHH
Confidence 356667777776665 4567778888877765444 3444446777778899999999988843333 3566666
Q ss_pred HHHHH-HhccCC
Q 046257 656 LAACR-LISLQP 666 (838)
Q Consensus 656 l~~c~-~~~l~P 666 (838)
+...+ +.+..|
T Consensus 162 l~~i~~l~~~~~ 173 (278)
T PF08631_consen 162 LHHIKQLAEKSP 173 (278)
T ss_pred HHHHHHHHhhCc
Confidence 66654 444444
|
It is also involved in sporulation []. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=91.06 E-value=3.9 Score=45.66 Aligned_cols=116 Identities=14% Similarity=0.174 Sum_probs=79.8
Q ss_pred cCCHHHHHHHHHhcCC--CCHHHHHHH-HHHHHHcCChHHHHHHHHHHHHcC--CC-CChhHHHHHHHHHhccCCHHHHH
Q 046257 528 KGNIESASEVFKRQRK--RDLVSWNSM-ICGYAQHGHTKKALEVFKEMRRQD--LE-FDGITFIGVITACTHAGLVDEGQ 601 (838)
Q Consensus 528 ~g~~~~A~~~f~~~~~--~~~~~~~~l-i~~~~~~g~~~~A~~l~~~m~~~g--~~-pd~~t~~~ll~a~~~~g~~~~a~ 601 (838)
....+.|.++++.+.. |+...|.-. ...+...|+.++|++.|++..... .+ .....+--+...+.-.+++++|.
T Consensus 246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~ 325 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA 325 (468)
T ss_pred CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence 4678889999988873 776666544 345678899999999999766411 11 12344555666777889999999
Q ss_pred HHHHHHHhcCCccCCCchHHHHHHHHHhcCCH-------HHHHHHHhhCC
Q 046257 602 QYFDIMVNEHHIYPTMEHYSCMVDLYSRAGML-------EKAMDIINRMP 644 (838)
Q Consensus 602 ~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~-------~~A~~~~~~m~ 644 (838)
++|..+.+.....+...+|.. .-.+...|+. ++|.++|.+.|
T Consensus 326 ~~f~~L~~~s~WSka~Y~Y~~-a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 326 EYFLRLLKESKWSKAFYAYLA-AACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHHhccccHHHHHHHHH-HHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 999999866544333333322 3455667777 88999998875
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=91.02 E-value=7.4 Score=40.29 Aligned_cols=92 Identities=12% Similarity=0.243 Sum_probs=57.0
Q ss_pred HHHHHHHHHhcCC-------CCHHHHHHHHHHHHHcCC----hHHHHHHHHHHHHcCCCCChh-HHHHHHHHHhc-cCC-
Q 046257 531 IESASEVFKRQRK-------RDLVSWNSMICGYAQHGH----TKKALEVFKEMRRQDLEFDGI-TFIGVITACTH-AGL- 596 (838)
Q Consensus 531 ~~~A~~~f~~~~~-------~~~~~~~~li~~~~~~g~----~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~~-~g~- 596 (838)
+..|..+|+.|++ ++-.++.+|+.. ..++ .+++..+|+.+.+.|+..+.. -+.+-+-++.. ...
T Consensus 119 ~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~ 196 (297)
T PF13170_consen 119 IQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQE 196 (297)
T ss_pred HHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchH
Confidence 4456677777762 233455555544 2222 356778888888888887643 34444433332 222
Q ss_pred -HHHHHHHHHHHHhcCCccCCCchHHHHHH
Q 046257 597 -VDEGQQYFDIMVNEHHIYPTMEHYSCMVD 625 (838)
Q Consensus 597 -~~~a~~~~~~m~~~~~~~p~~~~y~~lv~ 625 (838)
+..+.++++.+. +.|+++...||..+.-
T Consensus 197 ~v~r~~~l~~~l~-~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 197 KVARVIELYNALK-KNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHH-HcCCccccccccHHHH
Confidence 457788888887 5599999999887653
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=90.61 E-value=1.7 Score=38.85 Aligned_cols=51 Identities=14% Similarity=0.162 Sum_probs=22.4
Q ss_pred ccCCHHHHHHHHHHHHhcCCccCCC-chHHHHHHHHHhcCCHHHHHHHHhhC
Q 046257 593 HAGLVDEGQQYFDIMVNEHHIYPTM-EHYSCMVDLYSRAGMLEKAMDIINRM 643 (838)
Q Consensus 593 ~~g~~~~a~~~~~~m~~~~~~~p~~-~~y~~lv~~l~r~G~~~~A~~~~~~m 643 (838)
..|++++|.+.|+.+...+...|-. ...-.++++|.+.|++++|...+++.
T Consensus 22 ~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rF 73 (142)
T PF13512_consen 22 QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRF 73 (142)
T ss_pred HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 3444555555555444443332211 12333445555555555555444443
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.38 E-value=3.3 Score=42.11 Aligned_cols=160 Identities=10% Similarity=0.109 Sum_probs=90.8
Q ss_pred cCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChh--HHHHHHH--HHhccCCHHHH
Q 046257 528 KGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGI--TFIGVIT--ACTHAGLVDEG 600 (838)
Q Consensus 528 ~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~--t~~~ll~--a~~~~g~~~~a 600 (838)
.|+.-+|-..++++. +.|..+|+---.+|..+|+.+.-...+++.... ..||.- +|..=+. ++...|-+++|
T Consensus 116 ~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred cccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 456666666666654 457777777777777777777777777777653 344542 2222222 23456777777
Q ss_pred HHHHHHHHhcCCccC-CCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHH
Q 046257 601 QQYFDIMVNEHHIYP-TMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMY 679 (838)
Q Consensus 601 ~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y 679 (838)
.+.-++.. .+.| |.-.--++...+.-.|+++|+.+|+.+-. ..|. .-.---+-+|-..+-.|
T Consensus 195 Ek~A~ral---qiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~te-----d~Wr---------~s~mlasHNyWH~Al~~ 257 (491)
T KOG2610|consen 195 EKQADRAL---QINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTE-----DDWR---------QSWMLASHNYWHTALFH 257 (491)
T ss_pred HHHHHhhc---cCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcc-----cchh---------hhhHHHhhhhHHHHHhh
Confidence 77666554 3333 22233345566777777777777776542 1110 00000123455566667
Q ss_pred HhcCCchHHHHHHHHHhhCCCccCCc
Q 046257 680 AATGHWQERARVRKLMNDRKVKKEAG 705 (838)
Q Consensus 680 ~~~g~~~~a~~~~~~m~~~g~~~~~~ 705 (838)
...+.++.|.+++..=.-+.+.|..+
T Consensus 258 iE~aeye~aleIyD~ei~k~l~k~Da 283 (491)
T KOG2610|consen 258 IEGAEYEKALEIYDREIWKRLEKDDA 283 (491)
T ss_pred hcccchhHHHHHHHHHHHHHhhccch
Confidence 77777888888877654444444443
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.04 E-value=42 Score=38.69 Aligned_cols=75 Identities=12% Similarity=0.112 Sum_probs=46.5
Q ss_pred hHHHHHHHHhHcCCChhHHHHHHhcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhc
Q 046257 215 SVCNALISMYLKSKMVRDARAVFDGMEDRDSITWNSMVAGYVTNELHMEAFETFNNMGLAGAELTRSTFVSVIKLCAT 292 (838)
Q Consensus 215 ~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~ 292 (838)
.++...|+.+.-.|++++|-...-.|-..+..-|.--+.-+...++......+ +....-..+...|-.+|-.+..
T Consensus 393 kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 393 KVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred HHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhcc---CCCCCcccCchHHHHHHHHHHH
Confidence 45666777777778888888877777777777777777777666665443332 2222122344556666666554
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.97 E-value=2 Score=43.40 Aligned_cols=75 Identities=11% Similarity=0.129 Sum_probs=61.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH-----cCCCCChhHHHHH
Q 046257 516 CVSSALVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRR-----QDLEFDGITFIGV 587 (838)
Q Consensus 516 ~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~pd~~t~~~l 587 (838)
.++..++..+..+|+.+.+.+.+++.. +-|...|..+|.+|.+.|+...|+..|+++.. .|+.|-..+....
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 456678889999999999999998876 45788999999999999999999999998766 5777776655544
Q ss_pred HHH
Q 046257 588 ITA 590 (838)
Q Consensus 588 l~a 590 (838)
..+
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 443
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.86 E-value=20 Score=34.75 Aligned_cols=162 Identities=17% Similarity=0.213 Sum_probs=119.4
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcC-----CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 046257 515 LCVSSALVTMYSKKGNIESASEVFKRQR-----KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGITFIGVIT 589 (838)
Q Consensus 515 ~~~~~~li~~y~k~g~~~~A~~~f~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~ 589 (838)
..........+...+.+..+...+.... ......+..+...+...++..++++.+.........+. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHH
Confidence 4455566677888888888888877653 34556777788888888999999999999988443331 22222333
Q ss_pred -HHhccCCHHHHHHHHHHHHhcCCccC----CCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhcc
Q 046257 590 -ACTHAGLVDEGQQYFDIMVNEHHIYP----TMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISL 664 (838)
Q Consensus 590 -a~~~~g~~~~a~~~~~~m~~~~~~~p----~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l 664 (838)
++...|..+++...+..... ..| ....+......+...|+.++|...+.+. ++.
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~------------------~~~ 196 (291)
T COG0457 138 GALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKA------------------LKL 196 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHH------------------Hhh
Confidence 78899999999999998853 233 2223333444566788999999999877 566
Q ss_pred CCC-CchhHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 046257 665 QPH-DSAIYVLLSNMYAATGHWQERARVRKLMNDR 698 (838)
Q Consensus 665 ~P~-~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~~ 698 (838)
.|. ....+..++..|...|+++++...+......
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 231 (291)
T COG0457 197 NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL 231 (291)
T ss_pred CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh
Confidence 666 5788889999999999999999999888764
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.40 E-value=2.7 Score=43.90 Aligned_cols=56 Identities=13% Similarity=0.095 Sum_probs=36.4
Q ss_pred hHHHHHHHHcCCHHHHHHHHHhcC-------C--CCcchHHHHHHHHHhcCCchHHHHHHHHhhc
Q 046257 417 TALLNAYVKKGILDEAAKVFELID-------E--KDIVAWSAMLAGYAQIGDTEGAVKIYRQLTS 472 (838)
Q Consensus 417 ~~Li~~y~~~g~~~~A~~~f~~~~-------~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 472 (838)
-+|.+.|.-..++++|+..+.+-. . ....++-+|..+|...|..++|+.....-.+
T Consensus 279 YSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 279 YSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 356666666677777777765322 1 1334666788888888888888777665544
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=89.31 E-value=2.9 Score=41.67 Aligned_cols=101 Identities=16% Similarity=0.151 Sum_probs=77.9
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhcCCccC-CCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHH
Q 046257 583 TFIGVITACTHAGLVDEGQQYFDIMVNEHHIYP-TMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRL 661 (838)
Q Consensus 583 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~ 661 (838)
.|+..+.. ...|++.+|..-|..-++.|.-.+ ....+-.|...+...|++++|...|..+- +-
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~---------------k~ 207 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVV---------------KD 207 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHH---------------Hh
Confidence 46655544 467889999999999997763322 23345568999999999999999998761 00
Q ss_pred hccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhhCC
Q 046257 662 ISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMNDRK 699 (838)
Q Consensus 662 ~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~~g 699 (838)
.--.|+-|..+.-|+.+..+.|+-++|..+++...++-
T Consensus 208 ~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~Y 245 (262)
T COG1729 208 YPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRY 245 (262)
T ss_pred CCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHC
Confidence 22356788999999999999999999999999987653
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=89.31 E-value=12 Score=32.81 Aligned_cols=66 Identities=18% Similarity=0.257 Sum_probs=46.3
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhh
Q 046257 618 EHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMND 697 (838)
Q Consensus 618 ~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~ 697 (838)
++...-++.+...|+-|.-.++.... +.-+..+|...+-++++|.+.|...++.+++++.-+
T Consensus 87 e~vD~ALd~lv~~~kkDqLdki~~~l------------------~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 87 EYVDLALDILVKQGKKDQLDKIYNEL------------------KKNEEINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH-----------------------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHH------------------hhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 44455567777788777776776654 111223788999999999999999999999999999
Q ss_pred CCCc
Q 046257 698 RKVK 701 (838)
Q Consensus 698 ~g~~ 701 (838)
+|++
T Consensus 149 kG~k 152 (161)
T PF09205_consen 149 KGLK 152 (161)
T ss_dssp TT-H
T ss_pred hchH
Confidence 9986
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=89.29 E-value=60 Score=39.43 Aligned_cols=99 Identities=20% Similarity=0.275 Sum_probs=50.0
Q ss_pred CChHHHHHHHHhcccCCCeeehHHHHHHHHHcCChHHHHHHHHHhhhcCCCCCcccHHHHHhhCCCCChhHHHHHHHHhh
Q 046257 329 GKMEDASKIFSMMREMKDVVSWTAMISGHLQNGAIDLAVNFFCQMTREGVRPNGFTYSIILTAQPAVSPFQVHAHIIKTN 408 (838)
Q Consensus 329 g~~~~A~~~f~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~ 408 (838)
+++++|..-+..+. ...|+-.+..--++|.+.+|+.++ +|+..++.-+..+++. .+...
T Consensus 894 ~ry~~AL~hLs~~~----~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~---------hL~~~ 952 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG----ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYAD---------HLREE 952 (1265)
T ss_pred HHHHHHHHHHHHcC----ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHH---------HHHHh
Confidence 44555555444443 233444555555666777777664 3444444433333221 11110
Q ss_pred ccCCcchhhHHHHHHHHcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhh
Q 046257 409 YEKSFSVGTALLNAYVKKGILDEAAKVFELIDEKDIVAWSAMLAGYAQIGDTEGAVKIYRQLT 471 (838)
Q Consensus 409 ~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 471 (838)
. -++--.-+|.++|+.++|.+.+ ..+|++.+|+.+-.+|.
T Consensus 953 ~-----~~~~Aal~Ye~~GklekAl~a~------------------~~~~dWr~~l~~a~ql~ 992 (1265)
T KOG1920|consen 953 L-----MSDEAALMYERCGKLEKALKAY------------------KECGDWREALSLAAQLS 992 (1265)
T ss_pred c-----cccHHHHHHHHhccHHHHHHHH------------------HHhccHHHHHHHHHhhc
Confidence 0 1122344577777777776554 44566677766666553
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.26 E-value=5.8 Score=34.57 Aligned_cols=86 Identities=16% Similarity=0.084 Sum_probs=42.8
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCC--chHHHHHHHHHhcCC
Q 046257 556 YAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTM--EHYSCMVDLYSRAGM 632 (838)
Q Consensus 556 ~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~--~~y~~lv~~l~r~G~ 632 (838)
.+..|+.+.|++.|.+.+. +-|. ...|+.-..++.-.|+.++|+.=++...+-.|-+... ..|.--..+|-..|+
T Consensus 53 laE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 3444555555555555554 3332 3445555555555555555555555544333322111 012222345666778
Q ss_pred HHHHHHHHhhC
Q 046257 633 LEKAMDIINRM 643 (838)
Q Consensus 633 ~~~A~~~~~~m 643 (838)
.|.|..-|+..
T Consensus 131 dd~AR~DFe~A 141 (175)
T KOG4555|consen 131 DDAARADFEAA 141 (175)
T ss_pred hHHHHHhHHHH
Confidence 88888777754
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=89.03 E-value=15 Score=32.25 Aligned_cols=58 Identities=22% Similarity=0.410 Sum_probs=36.5
Q ss_pred HHHHHHHcCCHHHHHHHHHhcC---CCCcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCC
Q 046257 419 LLNAYVKKGILDEAAKVFELID---EKDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVK 476 (838)
Q Consensus 419 Li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 476 (838)
-++...+.|+-|.-.++...+. +.+....-.+..+|.+.|+..++-+++++..+.|++
T Consensus 92 ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 92 ALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 3445556677777777776654 345555666777888888888888888888777753
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=88.99 E-value=12 Score=41.82 Aligned_cols=131 Identities=13% Similarity=0.126 Sum_probs=85.3
Q ss_pred HHHHHHHHHHH----cCChHHHHHHHHHHHHcCCCCChhHHHHHH-HHHhccCCHHHHHHHHHHHHhcCCccCCCch--H
Q 046257 548 SWNSMICGYAQ----HGHTKKALEVFKEMRRQDLEFDGITFIGVI-TACTHAGLVDEGQQYFDIMVNEHHIYPTMEH--Y 620 (838)
Q Consensus 548 ~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll-~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~--y 620 (838)
.|...+..+.. ....+.|.++++++.+ .-|+..-|...- ..+...|++++|.+.|+.......--|...| +
T Consensus 231 ~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~--~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~ 308 (468)
T PF10300_consen 231 WYHLVVPSFLGIDGEDVPLEEAEELLEEMLK--RYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCY 308 (468)
T ss_pred HHHHHHHHHcCCcccCCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHH
Confidence 45555555543 3467889999999999 689887765443 4567789999999999976532222233332 3
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCc-------hHHHHHHH
Q 046257 621 SCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHW-------QERARVRK 693 (838)
Q Consensus 621 ~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~-------~~a~~~~~ 693 (838)
--+...+.-.+++++|.+.+..+.-. ..|. ....++..+-.|...|+. ++|.++++
T Consensus 309 ~El~w~~~~~~~w~~A~~~f~~L~~~---s~WS--------------ka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~ 371 (468)
T PF10300_consen 309 FELAWCHMFQHDWEEAAEYFLRLLKE---SKWS--------------KAFYAYLAAACLLMLGREEEAKEHKKEAEELFR 371 (468)
T ss_pred HHHHHHHHHHchHHHHHHHHHHHHhc---cccH--------------HHHHHHHHHHHHHhhccchhhhhhHHHHHHHHH
Confidence 44567788999999999999988411 1111 111222334446666666 78888777
Q ss_pred HHhh
Q 046257 694 LMND 697 (838)
Q Consensus 694 ~m~~ 697 (838)
+...
T Consensus 372 ~vp~ 375 (468)
T PF10300_consen 372 KVPK 375 (468)
T ss_pred HHHH
Confidence 7654
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=88.99 E-value=0.88 Score=29.89 Aligned_cols=27 Identities=26% Similarity=0.365 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 046257 548 SWNSMICGYAQHGHTKKALEVFKEMRR 574 (838)
Q Consensus 548 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 574 (838)
+|+.|...|.+.|++++|+++|++.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467788888888888888888888553
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=88.90 E-value=3.4 Score=39.15 Aligned_cols=95 Identities=12% Similarity=0.106 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChh--HHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCC------Cch
Q 046257 548 SWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGI--TFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPT------MEH 619 (838)
Q Consensus 548 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~------~~~ 619 (838)
.|..+..-|.+.|+.++|++.|.++.+....|.+. .+..++..+...|++.....+..+......-..+ ...
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 45666677777777777777777777755555543 3556666667777777777666655421111011 112
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCC
Q 046257 620 YSCMVDLYSRAGMLEKAMDIINRMP 644 (838)
Q Consensus 620 y~~lv~~l~r~G~~~~A~~~~~~m~ 644 (838)
|..+. +...|++.+|-+.|-+.+
T Consensus 118 ~~gL~--~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 118 YEGLA--NLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHH--HHHhchHHHHHHHHHccC
Confidence 22222 234678888877776663
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=88.89 E-value=0.98 Score=29.03 Aligned_cols=32 Identities=25% Similarity=0.362 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC
Q 046257 547 VSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD 580 (838)
Q Consensus 547 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd 580 (838)
.+|..+...|...|++++|+..|++.++ +.|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE--LDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH--HCcC
Confidence 4678888888888888888888888888 5665
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=88.85 E-value=16 Score=40.30 Aligned_cols=157 Identities=15% Similarity=0.110 Sum_probs=89.2
Q ss_pred HHHhCCCchHHHHHHHH-HHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHcCCChh
Q 046257 153 GYARNKMNDRVLELFHR-MQVEGIKPNSFTFSTVLGVLADEGIVATAVQVHTMVIKNGGEVVTSVCNALISMYLKSKMVR 231 (838)
Q Consensus 153 ~~~~~g~~~~A~~l~~~-m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~ 231 (838)
...-.++++++.++... -.-..+ | ..-...+++-+-+.|..+.|.++-. |+ ..--....++|+++
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~~i-~-~~~~~~i~~fL~~~G~~e~AL~~~~---------D~---~~rFeLAl~lg~L~ 335 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLPNI-P-KDQGQSIARFLEKKGYPELALQFVT---------DP---DHRFELALQLGNLD 335 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS----------H---HHHHHHHHHCT-HH
T ss_pred HHHHcCChhhhhhhhhhhhhcccC-C-hhHHHHHHHHHHHCCCHHHHHhhcC---------Ch---HHHhHHHHhcCCHH
Confidence 33456677776655541 111111 1 3346667777777777777776532 22 12334556788999
Q ss_pred HHHHHHhcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHhCC
Q 046257 232 DARAVFDGMEDRDSITWNSMVAGYVTNELHMEAFETFNNMGLAGAELTRSTFVSVIKLCATTKELRLARQLHSQVLKNGI 311 (838)
Q Consensus 232 ~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~ 311 (838)
.|.++-++.. +...|..|.....++|+.+-|.+.|.+..+ |..++-.+...|+.+.-.++-+.....|-
T Consensus 336 ~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~ 404 (443)
T PF04053_consen 336 IALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD 404 (443)
T ss_dssp HHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC
Confidence 9988887766 556899999999999999999988887653 45555556666777766666666655541
Q ss_pred CCChhHHHHHHHHHHcCCChHHHHHHHHh
Q 046257 312 DFDHNIRTGLMVAYSKCGKMEDASKIFSM 340 (838)
Q Consensus 312 ~~~~~~~~~Li~~y~~~g~~~~A~~~f~~ 340 (838)
++....++...|+.++..+++.+
T Consensus 405 ------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 405 ------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp ------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred ------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 23333444444555555555444
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=88.46 E-value=0.63 Score=30.58 Aligned_cols=26 Identities=12% Similarity=0.184 Sum_probs=22.0
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHh
Q 046257 671 IYVLLSNMYAATGHWQERARVRKLMN 696 (838)
Q Consensus 671 ~y~~l~~~y~~~g~~~~a~~~~~~m~ 696 (838)
+|..|+++|...|+|++|.++++...
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46789999999999999999999843
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=88.43 E-value=1.4 Score=30.50 Aligned_cols=33 Identities=18% Similarity=0.391 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChh
Q 046257 548 SWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGI 582 (838)
Q Consensus 548 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ 582 (838)
+|..+...|...|++++|+++|++.++ ..||..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~--~~P~~~ 35 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALA--LDPDDP 35 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCCH
Confidence 567778888888888888888888888 567653
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=88.41 E-value=6.6 Score=43.25 Aligned_cols=131 Identities=18% Similarity=0.235 Sum_probs=76.4
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHHhcccCCCeeehHHHHHHHHHcCC
Q 046257 283 FVSVIKLCATTKELRLARQLHSQVLKNGIDFDHNIRTGLMVAYSKCGKMEDASKIFSMMREMKDVVSWTAMISGHLQNGA 362 (838)
Q Consensus 283 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~li~~~~~~g~ 362 (838)
...+++-+.+.|-.+.|.++-.. + ..-.+...++|+++.|.++.++.. +...|..|.....++|+
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D---------~---~~rFeLAl~lg~L~~A~~~a~~~~---~~~~W~~Lg~~AL~~g~ 362 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTD---------P---DHRFELALQLGNLDIALEIAKELD---DPEKWKQLGDEALRQGN 362 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS----------H---HHHHHHHHHCT-HHHHHHHCCCCS---THHHHHHHHHHHHHTTB
T ss_pred HHHHHHHHHHCCCHHHHHhhcCC---------h---HHHhHHHHhcCCHHHHHHHHHhcC---cHHHHHHHHHHHHHcCC
Confidence 45555555555666655554321 1 122345567777887777765543 55678888888888888
Q ss_pred hHHHHHHHHHhhhcCCCCCcccHHHHHhhCCCCChhHHHHHHHHhhccCCcchhhHHHHHHHHcCCHHHHHHHHHhcCCC
Q 046257 363 IDLAVNFFCQMTREGVRPNGFTYSIILTAQPAVSPFQVHAHIIKTNYEKSFSVGTALLNAYVKKGILDEAAKVFELIDEK 442 (838)
Q Consensus 363 ~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~ 442 (838)
.+-|.+.|.+..+- ..|+-.|.-.|+.+.-.++-+....+
T Consensus 363 ~~lAe~c~~k~~d~----------------------------------------~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 363 IELAEECYQKAKDF----------------------------------------SGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp HHHHHHHHHHCT-H----------------------------------------HHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhcCc----------------------------------------cccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 88888887776542 34555666777766666665544332
Q ss_pred CcchHHHHHHHHHhcCCchHHHHHHHHh
Q 046257 443 DIVAWSAMLAGYAQIGDTEGAVKIYRQL 470 (838)
Q Consensus 443 ~~~~~~~li~~~~~~g~~~~A~~l~~~m 470 (838)
+ -+|....++...|+.++..+++.+-
T Consensus 403 ~--~~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 403 G--DINIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp T---HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred c--CHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 2 1455555666667777777776543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.07 E-value=8.7 Score=36.77 Aligned_cols=166 Identities=16% Similarity=0.137 Sum_probs=96.9
Q ss_pred HHhcCCHHHHHHHHHhcC--CC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccCCHHHH
Q 046257 525 YSKKGNIESASEVFKRQR--KR-DLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITACTHAGLVDEG 600 (838)
Q Consensus 525 y~k~g~~~~A~~~f~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a 600 (838)
|-..|-..-|+-=|.+.. .| -...||-+.--+...|+++.|.+.|+...+ +.|. ..++..-.-++--.|++.-|
T Consensus 75 YDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~E--LDp~y~Ya~lNRgi~~YY~gR~~LA 152 (297)
T COG4785 75 YDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAHLNRGIALYYGGRYKLA 152 (297)
T ss_pred hhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhc--cCCcchHHHhccceeeeecCchHhh
Confidence 444455555555554432 33 345677777777888888888888888877 5554 34444333445567777777
Q ss_pred HHHHHHHHhcCCccCCCchHHHHHHHHH--hcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHH------------HhccCC
Q 046257 601 QQYFDIMVNEHHIYPTMEHYSCMVDLYS--RAGMLEKAMDIINRMPFAASATVWRTVLAACR------------LISLQP 666 (838)
Q Consensus 601 ~~~~~~m~~~~~~~p~~~~y~~lv~~l~--r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~------------~~~l~P 666 (838)
.+=|...-.. .|+-. |.++ ++|. +.=+..+|..-+.+=-...|.--|+.-+-..- +.+...
T Consensus 153 q~d~~~fYQ~---D~~DP-fR~L-WLYl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a~ 227 (297)
T COG4785 153 QDDLLAFYQD---DPNDP-FRSL-WLYLNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISEETLMERLKADAT 227 (297)
T ss_pred HHHHHHHHhc---CCCCh-HHHH-HHHHHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccHHHHHHHHHhhcc
Confidence 7665544322 23222 2221 3333 33345566544432222455566766555432 111111
Q ss_pred C-------CchhHHHHHHHHHhcCCchHHHHHHHHHhh
Q 046257 667 H-------DSAIYVLLSNMYAATGHWQERARVRKLMND 697 (838)
Q Consensus 667 ~-------~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~ 697 (838)
+ -+++|.-|+.-|...|..++|..+++....
T Consensus 228 ~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaia 265 (297)
T COG4785 228 DNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVA 265 (297)
T ss_pred chHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 1 256899999999999999999999998764
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.39 E-value=5.2 Score=34.85 Aligned_cols=85 Identities=14% Similarity=0.182 Sum_probs=67.0
Q ss_pred HHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc-CCCCCh--hHHHHHHHHHhccCCH
Q 046257 524 MYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQ-DLEFDG--ITFIGVITACTHAGLV 597 (838)
Q Consensus 524 ~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~pd~--~t~~~ll~a~~~~g~~ 597 (838)
+.+..|+++.|++.|.+.. +.+...||.-..+|.-.|+.++|++=+++.++. |-+.-. ..|.--...|...|+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 4678899999999998765 568889999999999999999999999999884 222111 2355445567778999
Q ss_pred HHHHHHHHHHH
Q 046257 598 DEGQQYFDIMV 608 (838)
Q Consensus 598 ~~a~~~~~~m~ 608 (838)
+.|..=|+...
T Consensus 132 d~AR~DFe~AA 142 (175)
T KOG4555|consen 132 DAARADFEAAA 142 (175)
T ss_pred HHHHHhHHHHH
Confidence 99998888775
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=87.11 E-value=0.056 Score=49.46 Aligned_cols=86 Identities=13% Similarity=0.144 Sum_probs=62.9
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHHhcccCCCeeehHHHHHHHHHcCChHH
Q 046257 286 VIKLCATTKELRLARQLHSQVLKNGIDFDHNIRTGLMVAYSKCGKMEDASKIFSMMREMKDVVSWTAMISGHLQNGAIDL 365 (838)
Q Consensus 286 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~li~~~~~~g~~~~ 365 (838)
+++.+.+.+.......+++.+.+.+...+....+.|+..|++.+..+...++++... ..-...++..+.+.|.+++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~----~yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN----NYDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS----SS-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccccc----ccCHHHHHHHHHhcchHHH
Confidence 455666667777777778888877766778889999999999988788877777433 2555677788888888888
Q ss_pred HHHHHHHhhh
Q 046257 366 AVNFFCQMTR 375 (838)
Q Consensus 366 A~~l~~~m~~ 375 (838)
|.-++.++..
T Consensus 89 a~~Ly~~~~~ 98 (143)
T PF00637_consen 89 AVYLYSKLGN 98 (143)
T ss_dssp HHHHHHCCTT
T ss_pred HHHHHHHccc
Confidence 8888777654
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=86.86 E-value=47 Score=35.44 Aligned_cols=71 Identities=20% Similarity=0.192 Sum_probs=48.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHhcCCC---Ccc----hHHHHHHHHHh---cCCchHHHHHHHHhhcCCCCCCHhhHHHHHH
Q 046257 418 ALLNAYVKKGILDEAAKVFELIDEK---DIV----AWSAMLAGYAQ---IGDTEGAVKIYRQLTSEGVKPNEFTFSSVIN 487 (838)
Q Consensus 418 ~Li~~y~~~g~~~~A~~~f~~~~~~---~~~----~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 487 (838)
.|+-.|....+++.-.++.+.+... ++. .-....-++.+ .|+.++|++++..+....-.+++.||..+-.
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 3555688889999999999988764 111 11223445556 7899999999999666666777777765543
Q ss_pred H
Q 046257 488 A 488 (838)
Q Consensus 488 a 488 (838)
.
T Consensus 226 I 226 (374)
T PF13281_consen 226 I 226 (374)
T ss_pred H
Confidence 3
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.53 E-value=72 Score=37.22 Aligned_cols=142 Identities=11% Similarity=0.054 Sum_probs=68.5
Q ss_pred HHHHHHhCCChHHHHHHHccCCCCCcchHHHHH----HHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCC
Q 046257 119 LVDLYMRTNNVEDGRRVFDDMNESNVVSWTSLL----SGYARNKMNDRVLELFHRMQVEGIKPNSFTFSTVLGVLADEGI 194 (838)
Q Consensus 119 li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li----~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 194 (838)
-+++..+...++.|..+-..-.- |...-..+. +-+-+.|++++|...|-+-... +.| +.+++-+-....
T Consensus 340 kL~iL~kK~ly~~Ai~LAk~~~~-d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq~ 412 (933)
T KOG2114|consen 340 KLDILFKKNLYKVAINLAKSQHL-DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQR 412 (933)
T ss_pred HHHHHHHhhhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHHH
Confidence 34444555555555555443322 111112222 2234567777776666554321 112 234444444444
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHhHcCCChhHHHHHHhcCCCCCcc-hHHHHHHHHHhCCChHHHHHHH
Q 046257 195 VATAVQVHTMVIKNGGEVVTSVCNALISMYLKSKMVRDARAVFDGMEDRDSI-TWNSMVAGYVTNELHMEAFETF 268 (838)
Q Consensus 195 ~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~-~~n~li~~~~~~g~~~~A~~l~ 268 (838)
...-...++.+.+.|+. +...-+.|++.|.+.++.+.-.++.+...+.... -....+..+-+.+..++|..+-
T Consensus 413 IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA 486 (933)
T KOG2114|consen 413 IKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLA 486 (933)
T ss_pred HHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHH
Confidence 55555566666666643 3333456777777777777766666655421111 1233444444455555554443
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.16 E-value=38 Score=33.70 Aligned_cols=169 Identities=18% Similarity=0.211 Sum_probs=92.4
Q ss_pred HHcCCHHHHHHHHHhcCCCCc------chHHHHHHHHHhcCCchHHHHHHHHhhcC-CCCCCH--hhHHHHHHHhcCC--
Q 046257 424 VKKGILDEAAKVFELIDEKDI------VAWSAMLAGYAQIGDTEGAVKIYRQLTSE-GVKPNE--FTFSSVINACTAP-- 492 (838)
Q Consensus 424 ~~~g~~~~A~~~f~~~~~~~~------~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~--~t~~~ll~a~~~~-- 492 (838)
.+.|++++|.+.|+.+....+ .+--.++-++-+.+++++|+..+++.... +-.||. ..|...+.-+...
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~ 124 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDD 124 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCc
Confidence 478999999999999975422 23334566777899999999999997663 344443 3333333322111
Q ss_pred -hhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHH-HH-HHHHHHHHcCChHHHHHHH
Q 046257 493 -SAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQRKRDLVS-WN-SMICGYAQHGHTKKALEVF 569 (838)
Q Consensus 493 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~-~~-~li~~~~~~g~~~~A~~l~ 569 (838)
..+...+++-+..+.. +|.-|=...-..+|......+. |... ++ .+..-|.+.|.+..|..-+
T Consensus 125 ~~rDq~~~~~A~~~f~~------------~i~ryPnS~Ya~dA~~~i~~~~--d~LA~~Em~IaryY~kr~~~~AA~nR~ 190 (254)
T COG4105 125 VTRDQSAARAAFAAFKE------------LVQRYPNSRYAPDAKARIVKLN--DALAGHEMAIARYYLKRGAYVAAINRF 190 (254)
T ss_pred cccCHHHHHHHHHHHHH------------HHHHCCCCcchhhHHHHHHHHH--HHHHHHHHHHHHHHHHhcChHHHHHHH
Confidence 0112222222111111 1111111111111211111110 1111 11 2445688889999999999
Q ss_pred HHHHHcCCCCC-hh---HHHHHHHHHhccCCHHHHHHHHHHHH
Q 046257 570 KEMRRQDLEFD-GI---TFIGVITACTHAGLVDEGQQYFDIMV 608 (838)
Q Consensus 570 ~~m~~~g~~pd-~~---t~~~ll~a~~~~g~~~~a~~~~~~m~ 608 (838)
++|++. -|+ .. .+-.+..++-+.|..++|...-.-+.
T Consensus 191 ~~v~e~--y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 191 EEVLEN--YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred HHHHhc--cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 999885 333 22 35556677888888888887766654
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=85.95 E-value=30 Score=32.24 Aligned_cols=32 Identities=13% Similarity=0.262 Sum_probs=15.5
Q ss_pred HHhCCCCChhHHHHHHHHHHcCCChHHHHHHH
Q 046257 307 LKNGIDFDHNIRTGLMVAYSKCGKMEDASKIF 338 (838)
Q Consensus 307 ~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f 338 (838)
.+.+++++..++..+++.+.+.|+...-..++
T Consensus 21 ~~~~i~~~~~L~~lli~lLi~~~~~~~L~qll 52 (167)
T PF07035_consen 21 NQHNIPVQHELYELLIDLLIRNGQFSQLHQLL 52 (167)
T ss_pred HHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 33445555555555555555555544444333
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.90 E-value=39 Score=33.61 Aligned_cols=50 Identities=12% Similarity=0.204 Sum_probs=36.3
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHhhCCCccCCceeEEEECCEEEEEeeCCCCCCChHHHHHHHHHHHHHHHHcCc
Q 046257 672 YVLLSNMYAATGHWQERARVRKLMNDRKVKKEAGYSWIEVKNKTYSFLAGDISHPQSNQIYSKLEELSTRLKDAGY 747 (838)
Q Consensus 672 y~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~~~~~s~i~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~~~g~ 747 (838)
=...++.|.+.|.|.-|..-++.|.+. +|.+..+.+.|..+.+-....|.
T Consensus 170 Em~IaryY~kr~~~~AA~nR~~~v~e~--------------------------y~~t~~~~eaL~~l~eaY~~lgl 219 (254)
T COG4105 170 EMAIARYYLKRGAYVAAINRFEEVLEN--------------------------YPDTSAVREALARLEEAYYALGL 219 (254)
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHhc--------------------------cccccchHHHHHHHHHHHHHhCC
Confidence 356788999999999999999988763 55556666666666655555553
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=85.39 E-value=0.75 Score=29.47 Aligned_cols=25 Identities=16% Similarity=0.352 Sum_probs=20.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhhC
Q 046257 619 HYSCMVDLYSRAGMLEKAMDIINRM 643 (838)
Q Consensus 619 ~y~~lv~~l~r~G~~~~A~~~~~~m 643 (838)
.+..+...+.+.|++++|++.+++.
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~a 27 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKA 27 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 4566788899999999999999987
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=85.16 E-value=2.7 Score=42.52 Aligned_cols=62 Identities=18% Similarity=0.376 Sum_probs=56.5
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhh
Q 046257 618 EHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMND 697 (838)
Q Consensus 618 ~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~ 697 (838)
..+..++..+..+|+++.+.+.+++. ++++|-+...|..|...|...|+...|...++.+++
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~L------------------i~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERL------------------IELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHH------------------HhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 35677889999999999999999976 889999999999999999999999999999999876
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=85.10 E-value=5.4 Score=41.78 Aligned_cols=58 Identities=19% Similarity=0.157 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcC---------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 046257 517 VSSALVTMYSKKGNIESASEVFKRQR---------KRDLVSWNSMICGYAQHGHTKKALEVFKEMRR 574 (838)
Q Consensus 517 ~~~~li~~y~k~g~~~~A~~~f~~~~---------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 574 (838)
..-+|.+.|.-..+++.|+.++.+-. --...++.+|..+|...|..++|+...+.-++
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 34455666666666777776665322 11345666777777777777777776665544
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=84.84 E-value=11 Score=41.06 Aligned_cols=69 Identities=13% Similarity=0.144 Sum_probs=51.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCC--CchhHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 046257 621 SCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPH--DSAIYVLLSNMYAATGHWQERARVRKLMNDR 698 (838)
Q Consensus 621 ~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~--~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~~ 698 (838)
.-+...+-+.|+.+||.+.+++| ++..|. +-.++..|.+.|-..+++.|+..++.+-.+-
T Consensus 263 rRLAmCarklGr~~EAIk~~rdL------------------lke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi 324 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDL------------------LKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI 324 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHH------------------HhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc
Confidence 34566677899999999999988 444443 5567888899999999999999999887655
Q ss_pred CCccCCcee
Q 046257 699 KVKKEAGYS 707 (838)
Q Consensus 699 g~~~~~~~s 707 (838)
...|....+
T Consensus 325 ~lpkSAti~ 333 (539)
T PF04184_consen 325 SLPKSATIC 333 (539)
T ss_pred cCCchHHHH
Confidence 444444333
|
The molecular function of this protein is uncertain. |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=84.61 E-value=20 Score=33.28 Aligned_cols=134 Identities=10% Similarity=0.013 Sum_probs=81.0
Q ss_pred HHHHHHHHHcCCCCCcccHHHHHHHhccCCChhhHHHHHHHHHHhCCCCChhH-HHHHHHHHHhCCChHHHHHHHccCCC
Q 046257 63 LNLFLGIRRLGLPLFGSTLSSVLKTCGCLFDHVFGRQVHCECVKSGFARDVNV-STSLVDLYMRTNNVEDGRRVFDDMNE 141 (838)
Q Consensus 63 ~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~-~~~li~~y~~~g~~~~A~~~f~~m~~ 141 (838)
++..+.+.+.+++|+...+..++..+.+.|......++ +..++-+|... .-.|++. . +....+.++=-+|..
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~ql----lq~~Vi~DSk~lA~~LLs~-~--~~~~~~~Ql~lDMLk 86 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQL----LQYHVIPDSKPLACQLLSL-G--NQYPPAYQLGLDMLK 86 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH----HhhcccCCcHHHHHHHHHh-H--ccChHHHHHHHHHHH
Confidence 35566677788999999999999999988887665554 55565555443 3333332 2 222333443334433
Q ss_pred CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHH
Q 046257 142 SNVVSWTSLLSGYARNKMNDRVLELFHRMQVEGIKPNSFTFSTVLGVLADEGIVATAVQVHTMVIK 207 (838)
Q Consensus 142 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~l~~~~~~ 207 (838)
+=...+..++..+...|++-+|+.+.+..... +...-..++.+....++...--.++....+
T Consensus 87 RL~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 87 RLGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred HhhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33335777888888999999999888775321 222334455665555555544444444443
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=84.39 E-value=2.1 Score=27.25 Aligned_cols=31 Identities=26% Similarity=0.461 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC
Q 046257 548 SWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD 580 (838)
Q Consensus 548 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd 580 (838)
.|..+...|...|++++|++.|++..+ +.|+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~--l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE--LDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH--HCcC
Confidence 466777788888888888888888877 5554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=84.20 E-value=0.67 Score=29.84 Aligned_cols=25 Identities=24% Similarity=0.384 Sum_probs=20.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhhC
Q 046257 619 HYSCMVDLYSRAGMLEKAMDIINRM 643 (838)
Q Consensus 619 ~y~~lv~~l~r~G~~~~A~~~~~~m 643 (838)
.|..+..+|...|++++|++.+++.
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~a 27 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRA 27 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHH
Confidence 5777888999999999999999887
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=84.14 E-value=2.6 Score=37.86 Aligned_cols=54 Identities=17% Similarity=0.232 Sum_probs=47.5
Q ss_pred hcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhhCCC
Q 046257 629 RAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMNDRKV 700 (838)
Q Consensus 629 r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~~g~ 700 (838)
+.+++++++.+++.| --+.|+.++.-..-++++...|+|+||.++++...+.+.
T Consensus 22 ~~~d~~D~e~lLdAL------------------rvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~ 75 (153)
T TIGR02561 22 RSADPYDAQAMLDAL------------------RVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAG 75 (153)
T ss_pred hcCCHHHHHHHHHHH------------------HHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCC
Confidence 488999999999887 457888999999999999999999999999999987653
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=84.05 E-value=19 Score=37.28 Aligned_cols=60 Identities=13% Similarity=0.166 Sum_probs=31.4
Q ss_pred HHHHHHHHHhhhCCCCCChh--hHHHHHHHHhccCc--HHHHHHHHHHHHHhCCCCChhHHHHH
Q 046257 262 MEAFETFNNMGLAGAELTRS--TFVSVIKLCATTKE--LRLARQLHSQVLKNGIDFDHNIRTGL 321 (838)
Q Consensus 262 ~~A~~l~~~m~~~g~~p~~~--t~~~ll~~~~~~~~--~~~a~~~~~~~~~~g~~~~~~~~~~L 321 (838)
+.+...|+.+...|+..+.. ....++..+..... ...+..+++.+.+.|++.....|..+
T Consensus 160 ~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 160 ERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 44556666666666555433 23333333322222 34566677777777766655554433
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=83.63 E-value=74 Score=34.89 Aligned_cols=169 Identities=14% Similarity=0.122 Sum_probs=110.4
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhH
Q 046257 146 SWTSLLSGYARNKMNDRVLELFHRMQVEGIKPNSFTFSTVLGVLADEGIVATAVQVHTMVIKNGGEVVTSVCNALISMYL 225 (838)
Q Consensus 146 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~ 225 (838)
..-+++..+..+-.++-...+..+|..-| .+...|..+++++... ..+.-..+++++++..+ .|++....|...|-
T Consensus 68 ~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa~~yE 143 (711)
T COG1747 68 CLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELADKYE 143 (711)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHHHHHH
Confidence 45667777777777777778888887754 4677888888888877 55667778888887763 45555566666666
Q ss_pred cCCChhHHHHHHhcCCCC------Cc---chHHHHHHHHHhCCChHHHHHHHHHhhhC-CCCCChhhHHHHHHHHhccCc
Q 046257 226 KSKMVRDARAVFDGMEDR------DS---ITWNSMVAGYVTNELHMEAFETFNNMGLA-GAELTRSTFVSVIKLCATTKE 295 (838)
Q Consensus 226 ~~g~~~~A~~~f~~m~~~------~~---~~~n~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~t~~~ll~~~~~~~~ 295 (838)
+ ++...+...|.....+ +. ..|.-++..- ..+.+..+.+..++... |..--.+.+--+-.-|....+
T Consensus 144 k-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN 220 (711)
T COG1747 144 K-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENEN 220 (711)
T ss_pred H-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccC
Confidence 6 7777777777665321 11 2466555421 24556666666666543 344445566666677888888
Q ss_pred HHHHHHHHHHHHHhCCCCChhHHHHHH
Q 046257 296 LRLARQLHSQVLKNGIDFDHNIRTGLM 322 (838)
Q Consensus 296 ~~~a~~~~~~~~~~g~~~~~~~~~~Li 322 (838)
+.++.++...+++.. .-|...-..++
T Consensus 221 ~~eai~Ilk~il~~d-~k~~~ar~~~i 246 (711)
T COG1747 221 WTEAIRILKHILEHD-EKDVWARKEII 246 (711)
T ss_pred HHHHHHHHHHHhhhc-chhhhHHHHHH
Confidence 888888888887765 23333333343
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=83.59 E-value=64 Score=34.36 Aligned_cols=66 Identities=12% Similarity=0.071 Sum_probs=46.2
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC---ChhHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 046257 544 RDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEF---DGITFIGVITACTHAGLVDEGQQYFDIMVN 609 (838)
Q Consensus 544 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 609 (838)
....+|..++..+.+.|+++.|...+.++...+..+ +...+..-+...-..|+-++|...++...+
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345678888889999999999999998888744222 223333444555667888888888777664
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=82.74 E-value=59 Score=33.11 Aligned_cols=134 Identities=10% Similarity=0.099 Sum_probs=73.2
Q ss_pred hhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC----CHHHHHHHHHHHHHcCChHHHHHHH
Q 046257 494 AAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQRKR----DLVSWNSMICGYAQHGHTKKALEVF 569 (838)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~----~~~~~~~li~~~~~~g~~~~A~~l~ 569 (838)
++...+...+..+...... +....-.|.+.|...|+.+.|..++..++.. ......+-|..+.+.....+...+-
T Consensus 148 e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~l~ 226 (304)
T COG3118 148 EDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQDLQ 226 (304)
T ss_pred cchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 4444444444444433222 1334445777888999999999999988732 1122222344444444444444444
Q ss_pred HHHHHcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHhcC
Q 046257 570 KEMRRQDLEFD-GITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAG 631 (838)
Q Consensus 570 ~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G 631 (838)
++.-. .|| ...-..+...+...|+.++|.+.+-.+.++..---+...-..+++++.--|
T Consensus 227 ~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 227 RRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 44433 564 444556667788888888888766555533222233444555555555444
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=82.54 E-value=3.9 Score=37.45 Aligned_cols=64 Identities=14% Similarity=0.314 Sum_probs=51.6
Q ss_pred hHHHHHHHH---HhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHH
Q 046257 619 HYSCMVDLY---SRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLM 695 (838)
Q Consensus 619 ~y~~lv~~l---~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m 695 (838)
..+.|++.+ .+.++.++++.++..+ --+.|+.++.-..-++++...|+|.+|.++++.+
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~AL------------------rvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l 70 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDAL------------------RVLRPEFPELDLFDGWLHIVRGDWDDALRLLREL 70 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHH------------------HHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 344444443 4677889999998877 4678999999999999999999999999999999
Q ss_pred hhCCC
Q 046257 696 NDRKV 700 (838)
Q Consensus 696 ~~~g~ 700 (838)
.+++.
T Consensus 71 ~~~~~ 75 (160)
T PF09613_consen 71 EERAP 75 (160)
T ss_pred hccCC
Confidence 77653
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=82.12 E-value=93 Score=34.93 Aligned_cols=173 Identities=14% Similarity=0.076 Sum_probs=79.1
Q ss_pred chhhHHHHHHHHcCCHHHHHHHHHhcCCCC---cchHHHHHHHHHhcCCchHHHHHHHHhhcCCC--CCCHhhHHHHHHH
Q 046257 414 SVGTALLNAYVKKGILDEAAKVFELIDEKD---IVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGV--KPNEFTFSSVINA 488 (838)
Q Consensus 414 ~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~--~p~~~t~~~ll~a 488 (838)
..|..-++.-.+.|+.+...-+|+....+- ...|--.+.-....|+.+-|-.++....+--+ .|....+.+.+.
T Consensus 298 ~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~- 376 (577)
T KOG1258|consen 298 KNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFE- 376 (577)
T ss_pred HHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHH-
Confidence 344555566666777777777776665431 12343344333344666666665554443211 222222333222
Q ss_pred hcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHH---HHHHhcC--CCCHHHHHHHHHH-----HHH
Q 046257 489 CTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESAS---EVFKRQR--KRDLVSWNSMICG-----YAQ 558 (838)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~---~~f~~~~--~~~~~~~~~li~~-----~~~ 558 (838)
...++...|+.+++.+...- +.-+.+-.--+.+--+.|+.+.+. .++.... ..+....+.+.-- +.-
T Consensus 377 --e~~~n~~~A~~~lq~i~~e~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i 453 (577)
T KOG1258|consen 377 --ESNGNFDDAKVILQRIESEY-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKI 453 (577)
T ss_pred --HhhccHHHHHHHHHHHHhhC-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHH
Confidence 22256666666666655543 222223233344555666666665 3333222 1122222222211 223
Q ss_pred cCChHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 046257 559 HGHTKKALEVFKEMRRQDLEFDGITFIGVITAC 591 (838)
Q Consensus 559 ~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~ 591 (838)
.++.+.|..++.+|.+. +.++..-|..++.-+
T Consensus 454 ~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~ 485 (577)
T KOG1258|consen 454 REDADLARIILLEANDI-LPDCKVLYLELIRFE 485 (577)
T ss_pred hcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHH
Confidence 45566666666666652 222334444444433
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=82.10 E-value=1.1e+02 Score=35.69 Aligned_cols=38 Identities=21% Similarity=0.286 Sum_probs=24.4
Q ss_pred HHHHHcCChHHHHHHHHHhhhcCCCCCcccHHHHHhhCCC
Q 046257 355 SGHLQNGAIDLAVNFFCQMTREGVRPNGFTYSIILTAQPA 394 (838)
Q Consensus 355 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~ 394 (838)
..+.-.|++|.|++.+.+ ..+...|.+.+...|..+.-
T Consensus 266 ~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gL 303 (613)
T PF04097_consen 266 QVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGL 303 (613)
T ss_dssp HHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCC
Confidence 445667999999999887 44556677777777665543
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=81.42 E-value=70 Score=33.05 Aligned_cols=145 Identities=12% Similarity=0.075 Sum_probs=97.0
Q ss_pred hhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHH----HHHHHHHHcCChHHHH
Q 046257 494 AAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQR---KRDLVSWN----SMICGYAQHGHTKKAL 566 (838)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~----~li~~~~~~g~~~~A~ 566 (838)
|....+-..+..+++ .++.|...++--=++|.-.|+.+.-...|+++. .+|...|. .+.-++...|-+++|.
T Consensus 117 g~~h~a~~~wdklL~-d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAE 195 (491)
T KOG2610|consen 117 GKHHEAAIEWDKLLD-DYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAE 195 (491)
T ss_pred ccccHHHHHHHHHHH-hCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHH
Confidence 333444444445544 356777777777888999999999999999887 34554332 2233556789999999
Q ss_pred HHHHHHHHcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCC---CchHHHHHHHHHhcCCHHHHHHHHhh
Q 046257 567 EVFKEMRRQDLEF-DGITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPT---MEHYSCMVDLYSRAGMLEKAMDIINR 642 (838)
Q Consensus 567 ~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~y~~lv~~l~r~G~~~~A~~~~~~ 642 (838)
+.-++..+ +.| |.-.-.++....--.|+.+||.++...-..... ... ...|-...-.+...+.++.|++++++
T Consensus 196 k~A~ralq--iN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr-~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 196 KQADRALQ--INRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWR-QSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred HHHHhhcc--CCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchh-hhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 99998888 454 445666677777788999999998775432211 111 11233344455667899999999974
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=81.10 E-value=20 Score=33.22 Aligned_cols=19 Identities=21% Similarity=0.415 Sum_probs=8.6
Q ss_pred HHHcCChHHHHHHHHHhhh
Q 046257 357 HLQNGAIDLAVNFFCQMTR 375 (838)
Q Consensus 357 ~~~~g~~~~A~~l~~~m~~ 375 (838)
-.+.|++.+|..+|.++..
T Consensus 177 a~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 177 AYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHhccchHHHHHHHHHHHc
Confidence 3344444444444444443
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.81 E-value=16 Score=34.67 Aligned_cols=56 Identities=14% Similarity=0.150 Sum_probs=39.2
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 046257 625 DLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMNDR 698 (838)
Q Consensus 625 ~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~~ 698 (838)
.++.+.+.++.|.+--.+. +++.|.+..+...-+.+|....++++|+.-++++.+.
T Consensus 142 aa~iKl~k~e~aI~dcsKa------------------iel~pty~kAl~RRAeayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 142 AALIKLRKWESAIEDCSKA------------------IELNPTYEKALERRAEAYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred HHHHHhhhHHHHHHHHHhh------------------HhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 4455556666665555444 7777777777777788888888888888888877663
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=80.43 E-value=4.5 Score=41.26 Aligned_cols=48 Identities=10% Similarity=0.148 Sum_probs=26.2
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHhccCCHHHHHHHH
Q 046257 555 GYAQHGHTKKALEVFKEMRRQDLEF-DGITFIGVITACTHAGLVDEGQQYF 604 (838)
Q Consensus 555 ~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~ 604 (838)
-|.++|.+++|+..|..-.. +.| |.+++..-..||.+...+..|..=.
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC 154 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDC 154 (536)
T ss_pred hhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhH
Confidence 45555666666666655555 455 5555555555555555544444333
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=80.13 E-value=20 Score=33.96 Aligned_cols=92 Identities=10% Similarity=0.074 Sum_probs=41.6
Q ss_pred HHHHHHHHhCCChHHHHHHHHHhhhCCCCCChh--hHHHHHHHHhccCcHHHHHHHHHHHHHhCCC---CC----hhHHH
Q 046257 249 NSMVAGYVTNELHMEAFETFNNMGLAGAELTRS--TFVSVIKLCATTKELRLARQLHSQVLKNGID---FD----HNIRT 319 (838)
Q Consensus 249 n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~---~~----~~~~~ 319 (838)
..+..-|.+.|+.++|++.|.++.+....+... .+..+|+.+...+++..+.....++...--. .+ ..+|.
T Consensus 40 ~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~~ 119 (177)
T PF10602_consen 40 EDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKVYE 119 (177)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence 334444444444444444444444433333222 3344455555555555555544443322111 11 12233
Q ss_pred HHHHHHHcCCChHHHHHHHHhcc
Q 046257 320 GLMVAYSKCGKMEDASKIFSMMR 342 (838)
Q Consensus 320 ~Li~~y~~~g~~~~A~~~f~~~~ 342 (838)
.|.. ...+++..|-+.|-...
T Consensus 120 gL~~--l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 120 GLAN--LAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHH--HHhchHHHHHHHHHccC
Confidence 3322 23567777777776655
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 77.2 bits (189), Expect = 1e-14
Identities = 95/666 (14%), Positives = 189/666 (28%), Gaps = 195/666 (29%)
Query: 92 FDHVFGRQVHCECVKSGFARDVNVSTSLVDLYMRTNNVEDGRRVFDDM--NESNVV---- 145
F+ F C+ V+ + + + + M + V R+F + + +V
Sbjct: 25 FEDAFVDNFDCKDVQD-MPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFV 83
Query: 146 --------SWTSLLSGYA----------------RNKM-NDRVLELFHRMQVEGIKPNSF 180
+ L+S R+++ ND ++F + V ++P
Sbjct: 84 EEVLRINYKF--LMSPIKTEQRQPSMMTRMYIEQRDRLYNDN--QVFAKYNVSRLQPYL- 138
Query: 181 TFSTVLGVLADEGIVATAVQVHTMVIKNGGE----VVTSVCNALISMYLKSKMVRDARAV 236
L L V + + G V VC + V
Sbjct: 139 KLRQALLELRPAKNVL----IDGV----LGSGKTWVALDVC-------------LSYK-V 176
Query: 237 FDGMEDRDSITWNSMVAGYV-TNELHMEAFETFNNMGLAGAELTRSTFVSVIKLCATTKE 295
M+ + I W ++ + E +E + + +RS S IKL + +
Sbjct: 177 QCKMDFK--IFWLNL--KNCNSPETVLEMLQKLLYQ-IDPNWTSRSDHSSNIKLRIHSIQ 231
Query: 296 LRLARQLHSQVLKNG---ID----------FDHNIRT-----------GLMVAYSKCGKM 331
L R L S+ +N + F+ + + L A + +
Sbjct: 232 AELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISL 291
Query: 332 EDASKIFSMMREMKDVVS-WTAMISGHLQNGAID---LAVNFFCQMTREGV-RPNGFTYS 386
+ S + E+K ++ + L + ++ + R+G+ + + +
Sbjct: 292 DHHSMTLT-PDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKH- 349
Query: 387 IILTAQPAVSPFQVHAHIIKTNYEKSFSVGTALLNAYVKKGILDEAAKVFELIDEKDIVA 446
+ + II+++ L + + D + VF I
Sbjct: 350 -VNCDK--------LTTIIESSLNV--------LEPAEYRKMFDRLS-VFP--PSAHI-- 387
Query: 447 WSAMLAGYAQIGDTEGAVKIY-RQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQF--- 502
+ + + V V+N S +Q K+
Sbjct: 388 -------------PTILLSLIWFDVIKSDV-------MVVVNKLHKYSLVEKQPKESTIS 427
Query: 503 -HAC--SIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQRKRDLVSWNSMIC----G 555
+ +K KL N + ++V Y+ + D + +I
Sbjct: 428 IPSIYLELKVKLENEYALHRSIVDHYNIP-------------KTFD---SDDLIPPYLDQ 471
Query: 556 Y-AQH-G-HTKKA--LEVFKEMRR--QDLEFDGITFIGVITACTHAGLVDEGQQYFDIMV 608
Y H G H K E R D F TA +G + Q +
Sbjct: 472 YFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQ--QLKF 529
Query: 609 NEHHIYPTMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRL--ISLQP 666
+ +I Y +V+ L K + + + L I+L
Sbjct: 530 YKPYICDNDPKYERLVNAILD--FLPKIEENLICSKY-------------TDLLRIALMA 574
Query: 667 HDSAIY 672
D AI+
Sbjct: 575 EDEAIF 580
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 59.1 bits (142), Expect = 6e-09
Identities = 74/547 (13%), Positives = 146/547 (26%), Gaps = 195/547 (35%)
Query: 36 DRSPQRNFVEYNRLLFEYCRDSLH--------------QEALNLFLGIRRL----GLPLF 77
R P Y RD L+ Q L L + L + +
Sbjct: 102 QRQPSMMTRMY-----IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID 156
Query: 78 G------STLSSVLKTC-----GCLFD-HVF----GRQVHCECVKSGFARDVNVSTSLVD 121
G + + L C C D +F C ++ V L
Sbjct: 157 GVLGSGKTWV--ALDVCLSYKVQCKMDFKIFWLNLKN---CNSPET-------VLEMLQK 204
Query: 122 LYMRTNNVEDGRRVFDDMNESNVVSWTSLLSGYARNKMN-----DRVLELFHRMQVEGIK 176
L + + +WTS + K+ + L
Sbjct: 205 LLYQIDP-----------------NWTSRSDHSSNIKLRIHSIQAELRRLLKSKP----Y 243
Query: 177 PNSFTFSTVLGVLADEGIVATAVQVHTMVIK--NGGEVVTSVCNALISMYLKSKMVRDAR 234
N L VL + VQ + N C L++ R +
Sbjct: 244 ENC------LLVLLN-------VQ-NAKAWNAFNLS------CKILLT-------TRF-K 275
Query: 235 AVFDGMEDRDSITWNSMVAGYVTNELHMEAFETFNNMGLAGAELTRSTFVSVIKLCATTK 294
V D + ++ +++ + H L + + +
Sbjct: 276 QVTDFL--------SAATTTHISLDHHSMTLTPDEVKSL---------LLKYLDC--RPQ 316
Query: 295 EL-RLARQLHSQV-------LKNGIDFDHNIRTGLMVAYSKCGKMEDASKIF------SM 340
+L R + + +++G+ N + + C K+ + +
Sbjct: 317 DLPREVLTTNPRRLSIIAESIRDGLATWDNWK------HVNCDKLTTIIESSLNVLEPAE 370
Query: 341 MREM--------KDV--------VSWTAMISGHLQNGAIDLAVNFFCQMTREGVRPNGFT 384
R+M + W +I + + VN + + +P T
Sbjct: 371 YRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVM-----VVVNKLHKYSLVEKQPKEST 425
Query: 385 YSI----ILTAQPAVSPFQVHAHIIKTNYE--KSFSVGTALLN----------AY-VKKG 427
SI + + + +H I+ +Y K+F + + +K
Sbjct: 426 ISIPSIYLELKVKLENEYALHRSIV-DHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNI 484
Query: 428 ILDEAAKVFELI--D----EKDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFT 481
E +F ++ D E+ I S I +T +K Y+ + N+
Sbjct: 485 EHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPY----ICDNDPK 540
Query: 482 FSSVINA 488
+ ++NA
Sbjct: 541 YERLVNA 547
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 56.4 bits (135), Expect = 4e-08
Identities = 60/474 (12%), Positives = 147/474 (31%), Gaps = 97/474 (20%)
Query: 401 HAHI------IKTNYEKSFSVGTALLNAYVK----KGILDEAAKVFELIDEKDIVAWSAM 450
H H+ + Y+ SV +A+V K + D + + I+
Sbjct: 4 HHHMDFETGEHQYQYKDILSV---FEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDA 60
Query: 451 LAGYAQIGDT--EGAVKIYRQLTSEGVKPN-EFTFSSVINACTAPSAAVEQGKQFHACSI 507
++G ++ T ++ ++ E ++ N +F S + PS +
Sbjct: 61 VSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQR---- 116
Query: 508 KAKLNNALCVSSALVTMYSKKGNIESASEVFKRQR--KRDLVSWNSMICGYAQHGHTKKA 565
+ L + + K N+ K ++ + N +I G G T A
Sbjct: 117 -----DRLYNDNQVFA----KYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVA 167
Query: 566 LEVFKEMRRQDLEFDGITFIGVITACTHAGLVDEGQQ-YFDIMVNEHHIYPTMEHYSCMV 624
L+V + Q I ++ + + +++ Q+ + I N + + +S
Sbjct: 168 LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN----WTSRSDHSS-- 221
Query: 625 DLYSRAGMLEKAM-DIINRMPFAAS----ATVW-RTVLAA----CR-LISLQPHDSAIYV 673
++ R ++ + ++ P+ V A C+ L++ + +
Sbjct: 222 NIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTR--FKQVTD 279
Query: 674 LLSNMYAATGHWQERARVRKLMNDRKVKKEAGYS------WIEVKNKTYSFLAGDISHPQ 727
LS ++ + +++ + + +P+
Sbjct: 280 FLSAAT----------TTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTT-NPR 328
Query: 728 SNQIYSKLEELSTRLKDAGYKPDTS-YVLQDIDDEHKEAI-----------LSQHSERLA 775
+L ++ ++D T D+ I + +RL+
Sbjct: 329 ------RLSIIAESIRD---GLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS 379
Query: 776 IAFGLVATPAGA--PLQIVKNLRVCGDCHTVIKLISKLERRDIVVRDTNRFHHF 827
+ F P A P ++ + V+ +++KL + +V +
Sbjct: 380 V-F-----PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS 427
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 48.3 bits (114), Expect = 1e-05
Identities = 46/323 (14%), Positives = 94/323 (29%), Gaps = 82/323 (25%)
Query: 555 GYAQHGHTKKALEVFKEMRRQDLEFDGI--TFIGVITA--CTHAGLVDEG----QQY--F 604
G Q+ K L VF++ + + + +++ H ++ F
Sbjct: 12 GEHQY-QYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDH--IIMSKDAVSGTLRLF 68
Query: 605 DIMV--NEHHIYPTME-----HYSCMVDLYS-----RAGMLEKAMDIINRM-----PFAA 647
++ E + +E +Y ++ + M ++ +R+ F A
Sbjct: 69 WTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF-A 127
Query: 648 SATVWR----TVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMNDRKVKKE 703
V R L L+ L+P VL+ + +G + KV+ +
Sbjct: 128 KYNVSRLQPYLKLRQA-LLELRPAK---NVLIDGV-LGSGKT---WVALDVCLSYKVQCK 179
Query: 704 AGYS--WIEVKNKTYSFLAGDISHPQSNQIYSKLEELSTRLKDAGYKPDTSYVLQDIDDE 761
+ W+ +KN + + +++ T D + I E
Sbjct: 180 MDFKIFWLNLKNCN---SPETVLEMLQK-LLYQIDPNWTSRSDHSSNI--KLRIHSIQAE 233
Query: 762 HKEAILS-QHSERLAIAFGL--VATPAGAPLQIVK--NLRVCGDCHTVIKLISKLERRDI 816
+ + S + L + L V + NL C ++ + R
Sbjct: 234 LRRLLKSKPYENCLLV---LLNVQNA-----KAWNAFNLS----CKILL--TT----RFK 275
Query: 817 VVRD----TNRFH----HFKEGL 831
V D H H L
Sbjct: 276 QVTDFLSAATTTHISLDHHSMTL 298
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 58.3 bits (139), Expect = 9e-09
Identities = 14/127 (11%), Positives = 42/127 (33%), Gaps = 7/127 (5%)
Query: 520 ALVTMYSKKGNIESASEVFKRQRKR-------DLVSWNSMICGYAQHGHTKKALEVFKEM 572
A + A + + L +N+++ G+A+ G K+ + V +
Sbjct: 132 AFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMV 191
Query: 573 RRQDLEFDGITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGM 632
+ L D +++ + + +++ + + ++ RA +
Sbjct: 192 KDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATV 251
Query: 633 LEKAMDI 639
L+ +
Sbjct: 252 LKAVHKV 258
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 56.4 bits (134), Expect = 3e-08
Identities = 12/117 (10%), Positives = 34/117 (29%), Gaps = 6/117 (5%)
Query: 281 STFVSVIKLCATTKELRLARQLHSQVLKNGIDFDHNIRTGLMVAYSKCGKMEDASKIFSM 340
+++ L + + Q + + ++ A + +
Sbjct: 93 EQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVV 152
Query: 341 MREMK------DVVSWTAMISGHLQNGAIDLAVNFFCQMTREGVRPNGFTYSIILTA 391
+ + + A++ G + GA V + G+ P+ +Y+ L
Sbjct: 153 HHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQC 209
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 56.4 bits (134), Expect = 4e-08
Identities = 12/146 (8%), Positives = 51/146 (34%), Gaps = 8/146 (5%)
Query: 106 KSGFARDVNVSTSLVDLYMRTNNVEDGRRVFDDMNES-------NVVSWTSLLSGYARNK 158
++ + + + T+ + + + + + +++ G+AR
Sbjct: 120 QAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQG 179
Query: 159 MNDRVLELFHRMQVEGIKPNSFTFSTVLGVLADEGIVATAVQ-VHTMVIKNGGEVVTSVC 217
++ + ++ G+ P+ +++ L + + A ++ + + G ++
Sbjct: 180 AFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFT 239
Query: 218 NALISMYLKSKMVRDARAVFDGMEDR 243
L+S ++ +++ V
Sbjct: 240 AVLLSEEDRATVLKAVHKVKPTFSLP 265
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 52.9 bits (125), Expect = 5e-07
Identities = 10/79 (12%), Positives = 31/79 (39%), Gaps = 7/79 (8%)
Query: 418 ALLNAYVKKGILDEAAKVFELIDEK-------DIVAWSAMLAGYAQIGDTEGAVKIYRQL 470
A + L A + + + + ++A++ G+A+ G + V + +
Sbjct: 132 AFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMV 191
Query: 471 TSEGVKPNEFTFSSVINAC 489
G+ P+ ++++ +
Sbjct: 192 KDAGLTPDLLSYAAALQCM 210
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 838 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.94 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.94 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.93 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.92 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.87 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.87 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.85 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.84 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.83 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.81 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.78 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.77 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.75 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.72 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.71 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.7 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.7 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.68 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.66 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.66 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.65 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.62 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.62 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.62 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.61 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.6 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.6 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.59 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.59 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.58 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.56 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.53 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.53 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.49 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.46 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.43 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.43 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.36 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.35 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.32 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.3 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.3 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.27 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.27 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.26 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.25 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.23 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.23 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.23 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.22 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.21 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.21 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.19 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.19 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.18 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.18 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.18 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.17 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.15 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.15 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.14 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.13 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.11 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.11 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.09 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.06 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.06 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.05 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.05 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.04 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.03 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.02 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 98.98 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 98.93 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 98.9 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.89 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 98.89 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 98.87 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 98.87 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.85 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.84 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 98.84 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.82 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 98.76 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.75 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.72 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 98.72 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.7 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.7 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.7 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.69 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.69 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.68 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.67 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 98.66 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.58 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.58 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.57 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.54 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.53 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.52 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.51 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.48 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.47 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.47 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.47 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.47 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.43 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.42 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.42 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.41 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.4 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.39 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.38 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.37 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.37 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.35 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.35 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.33 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.33 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.32 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.31 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.31 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.29 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.25 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.23 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.23 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.22 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.21 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.21 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.2 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.18 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.16 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.14 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.14 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.12 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.12 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.11 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.1 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.07 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.04 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.04 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.04 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.03 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.02 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.01 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.0 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 97.99 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.99 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 97.96 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 97.93 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 97.92 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 97.91 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 97.9 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.88 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 97.88 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 97.87 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 97.87 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.87 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 97.86 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 97.86 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.86 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 97.86 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 97.85 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 97.85 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 97.84 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.84 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 97.81 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 97.8 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.78 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 97.77 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 97.77 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 97.76 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.75 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.75 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.75 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 97.7 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 97.68 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 97.65 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.62 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.61 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.59 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.57 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.55 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 97.53 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.44 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.43 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.42 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.36 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.35 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.29 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.28 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.26 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.16 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.12 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 97.06 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 97.04 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.03 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.99 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 96.91 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 96.89 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.88 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 96.77 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 96.77 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.73 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 96.73 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 96.71 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.66 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 96.57 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.56 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 96.3 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.25 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 96.25 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 95.82 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 95.67 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 95.56 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.54 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 95.37 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 95.29 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 95.24 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 94.81 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 94.57 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 94.12 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 94.06 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 93.98 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 93.57 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 93.33 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 93.27 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 93.19 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 91.47 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 90.11 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 90.04 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 89.41 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 89.14 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 88.31 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 85.96 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 85.84 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 84.47 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 83.7 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 82.19 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 81.17 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 81.0 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 80.95 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-39 Score=376.73 Aligned_cols=498 Identities=10% Similarity=-0.012 Sum_probs=404.1
Q ss_pred HHhCCChHHHHHHHccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHH
Q 046257 123 YMRTNNVEDGRRVFDDMNESNVVSWTSLLSGYARNKMNDRVLELFHRMQVEGIKPNSFTFSTVLGVLADEGIVATAVQVH 202 (838)
Q Consensus 123 y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~l~ 202 (838)
+.+.|.+..+...|+.++.+++..|+.++..|.+.|++++|+.+|++|.. ..||..++..++.+|...|++++|..++
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 140 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLL 140 (597)
T ss_dssp -------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHH
Confidence 45678888899999999989999999999999999999999999999985 4678899999999999999999999999
Q ss_pred HHHHHhCCCCchhHHHHHHHHhHcCCChhHHHHHHhcCCCC-------------------CcchHHHHHHHHHhCCChHH
Q 046257 203 TMVIKNGGEVVTSVCNALISMYLKSKMVRDARAVFDGMEDR-------------------DSITWNSMVAGYVTNELHME 263 (838)
Q Consensus 203 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~-------------------~~~~~n~li~~~~~~g~~~~ 263 (838)
+.+... +++..+++.++.+|.++|++++|.++|+++... +..+|+.++.+|.+.|++++
T Consensus 141 ~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 218 (597)
T 2xpi_A 141 TKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDR 218 (597)
T ss_dssp HHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHH
Confidence 988654 678999999999999999999999999964433 47899999999999999999
Q ss_pred HHHHHHHhhhCCCCCChh-hHHHHHHHHhccCcHHH--HHHH-HHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHH
Q 046257 264 AFETFNNMGLAGAELTRS-TFVSVIKLCATTKELRL--ARQL-HSQVLKNGIDFDHNIRTGLMVAYSKCGKMEDASKIFS 339 (838)
Q Consensus 264 A~~l~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~--a~~~-~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~ 339 (838)
|+++|++|.+.+ |+.. .+..+...+...+..+. +..+ +..+...+..+...+++.++.+|.+.|++++|.++|+
T Consensus 219 A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 296 (597)
T 2xpi_A 219 AKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLS 296 (597)
T ss_dssp HHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHH
Confidence 999999998753 4433 44444443333322222 1222 4455555555566777888999999999999999999
Q ss_pred hccc-CCCeeehHHHHHHHHHcCChHHHHHHHHHhhhcCCCCCcccHHHHHhhCCCCChhHHHHHHHHhhccCCcchhhH
Q 046257 340 MMRE-MKDVVSWTAMISGHLQNGAIDLAVNFFCQMTREGVRPNGFTYSIILTAQPAVSPFQVHAHIIKTNYEKSFSVGTA 418 (838)
Q Consensus 340 ~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (838)
++.+ .+++.+|+.++.+|.+.|++++|+++|++|.+.+.. +..++ +.
T Consensus 297 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~-------------------------------~~ 344 (597)
T 2xpi_A 297 SINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY-NLDVY-------------------------------PL 344 (597)
T ss_dssp TSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CCTTH-------------------------------HH
T ss_pred HhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc-cHHHH-------------------------------HH
Confidence 9973 378899999999999999999999999999875421 33333 56
Q ss_pred HHHHHHHcCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCChhh
Q 046257 419 LLNAYVKKGILDEAAKVFELIDE---KDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAA 495 (838)
Q Consensus 419 Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 495 (838)
++..|.+.|++++|.++|+.+.+ .+..+|+.++..|.+.|++++|+++|+++.+.. ..+..++..+...+... +.
T Consensus 345 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~-g~ 422 (597)
T 2xpi_A 345 HLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIE-GE 422 (597)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH-TC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc-CC
Confidence 88888999999999999987753 467789999999999999999999999987632 23467888888888888 99
Q ss_pred HHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 046257 496 VEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEM 572 (838)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 572 (838)
.+.+..++..+.+.+ +.+..+++.++.+|.+.|++++|.++|+++. +.+..+|+.++..|.+.|++++|+++|++|
T Consensus 423 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 501 (597)
T 2xpi_A 423 HDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNA 501 (597)
T ss_dssp HHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 999999998888764 4578889999999999999999999999876 567899999999999999999999999999
Q ss_pred HHc----CCCCC--hhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHhcCCHHHHHHHHhhCCCC
Q 046257 573 RRQ----DLEFD--GITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDIINRMPFA 646 (838)
Q Consensus 573 ~~~----g~~pd--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~ 646 (838)
.+. +..|+ ..+|..++.+|...|++++|.++|+.+.+.. +.+...|..+..+|.+.|++++|.+.++++
T Consensus 502 ~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--- 576 (597)
T 2xpi_A 502 LLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS--TNDANVHTAIALVYLHKKIPGLAITHLHES--- 576 (597)
T ss_dssp HHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHH---
T ss_pred HHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHH---
Confidence 986 67888 6789999999999999999999999998542 236788999999999999999999999988
Q ss_pred CCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHh
Q 046257 647 ASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAA 681 (838)
Q Consensus 647 ~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~ 681 (838)
++++|+++.+|..|+++|..
T Consensus 577 ---------------l~~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 577 ---------------LAISPNEIMASDLLKRALEE 596 (597)
T ss_dssp ---------------HHHCTTCHHHHHHHHHTTC-
T ss_pred ---------------HhcCCCChHHHHHHHHHHhc
Confidence 89999999999999999864
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-38 Score=363.89 Aligned_cols=487 Identities=9% Similarity=-0.016 Sum_probs=386.1
Q ss_pred hhhHHhhccCCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcccHHHHHHHhccCCChhhHHHHHHHHHHhC
Q 046257 29 KKDQSLFDRSPQRNFVEYNRLLFEYCRDSLHQEALNLFLGIRRLGLPLFGSTLSSVLKTCGCLFDHVFGRQVHCECVKSG 108 (838)
Q Consensus 29 ~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g 108 (838)
..++..|+.+|.+++..|+.++..|.+.|++++|+.+|++|... .|+..++..+..+|...|+++.|..++..+...
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 146 (597)
T 2xpi_A 70 LKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY- 146 (597)
T ss_dssp ------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG-
T ss_pred CCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc-
Confidence 35678889999899999999999999999999999999999854 578889999999999999999999999877543
Q ss_pred CCCChhHHHHHHHHHHhCCChHHHHHHHccCC-CC------------------CcchHHHHHHHHHhCCCchHHHHHHHH
Q 046257 109 FARDVNVSTSLVDLYMRTNNVEDGRRVFDDMN-ES------------------NVVSWTSLLSGYARNKMNDRVLELFHR 169 (838)
Q Consensus 109 ~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~-~~------------------~~~~~~~li~~~~~~g~~~~A~~l~~~ 169 (838)
++++.+++.++.+|.++|++++|.++|+++. .. ++.+|+.++.+|.+.|++++|+++|++
T Consensus 147 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 225 (597)
T 2xpi_A 147 -NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKE 225 (597)
T ss_dssp -GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6889999999999999999999999999544 33 478999999999999999999999999
Q ss_pred HHHCCCCCC-hhhHHHHHHHHhcCCChHH--HHHH-HHHHHHhCCCCchhHHHHHHHHhHcCCChhHHHHHHhcCCC--C
Q 046257 170 MQVEGIKPN-SFTFSTVLGVLADEGIVAT--AVQV-HTMVIKNGGEVVTSVCNALISMYLKSKMVRDARAVFDGMED--R 243 (838)
Q Consensus 170 m~~~g~~p~-~~t~~~ll~~~~~~g~~~~--a~~l-~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~ 243 (838)
|.+.+ |+ ...+..+...+...+..+. +..+ +..+...+......+++.++.+|.+.|++++|.++|+++.+ +
T Consensus 226 ~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~ 303 (597)
T 2xpi_A 226 ALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEK 303 (597)
T ss_dssp HHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGG
T ss_pred HHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCc
Confidence 98864 44 3444445444433322221 1111 44444445555667788889999999999999999999988 7
Q ss_pred CcchHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 046257 244 DSITWNSMVAGYVTNELHMEAFETFNNMGLAGAELTRSTFVSVIKLCATTKELRLARQLHSQVLKNGIDFDHNIRTGLMV 323 (838)
Q Consensus 244 ~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~ 323 (838)
+..+|+.++.+|.+.|++++|+++|++|.+.+ +.+..++..++.++.+.|++++|.++++.+.+.. +.+..+++.++.
T Consensus 304 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 381 (597)
T 2xpi_A 304 SSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGI 381 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHH
Confidence 99999999999999999999999999998765 3367789999999999999999999999999765 567889999999
Q ss_pred HHHcCCChHHHHHHHHhccc--CCCeeehHHHHHHHHHcCChHHHHHHHHHhhhcCCCCCcccHHHHHhhCCCCChhHHH
Q 046257 324 AYSKCGKMEDASKIFSMMRE--MKDVVSWTAMISGHLQNGAIDLAVNFFCQMTREGVRPNGFTYSIILTAQPAVSPFQVH 401 (838)
Q Consensus 324 ~y~~~g~~~~A~~~f~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~ 401 (838)
+|.+.|++++|.++|+++.+ ..+..+|+.++.+|.+.|++++|+++|++|.+.+ |+
T Consensus 382 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~-------------------- 439 (597)
T 2xpi_A 382 YYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF--QG-------------------- 439 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT--TT--------------------
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cc--------------------
Confidence 99999999999999998753 4567899999999999999999999999998753 21
Q ss_pred HHHHHhhccCCcchhhHHHHHHHHcCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCC
Q 046257 402 AHIIKTNYEKSFSVGTALLNAYVKKGILDEAAKVFELIDE---KDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPN 478 (838)
Q Consensus 402 ~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 478 (838)
+..+++.++.+|.+.|++++|.++|+++.+ .+..+|+.++..|.+.|++++|+++|++|.+..
T Consensus 440 ----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---- 505 (597)
T 2xpi_A 440 ----------THLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLV---- 505 (597)
T ss_dssp ----------CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH----
T ss_pred ----------chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhh----
Confidence 223346788899999999999999998754 467889999999999999999999999886530
Q ss_pred HhhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCc--hhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHH
Q 046257 479 EFTFSSVINACTAPSAAVEQGKQFHACSIKAKLNNA--LCVSSALVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMI 553 (838)
Q Consensus 479 ~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li 553 (838)
.+.+..|+ ..++..++.+|.+.|++++|.++|+++. +.+..+|..++
T Consensus 506 ----------------------------~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 557 (597)
T 2xpi_A 506 ----------------------------KKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIA 557 (597)
T ss_dssp ----------------------------HHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHH
T ss_pred ----------------------------hccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 01123333 4566667777888888888888887764 44677888888
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCh-hHHHHHHH
Q 046257 554 CGYAQHGHTKKALEVFKEMRRQDLEFDG-ITFIGVIT 589 (838)
Q Consensus 554 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~ 589 (838)
.+|.+.|++++|.+.|+++.+ +.|+. ..+..+..
T Consensus 558 ~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~l~~ 592 (597)
T 2xpi_A 558 LVYLHKKIPGLAITHLHESLA--ISPNEIMASDLLKR 592 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHh--cCCCChHHHHHHHH
Confidence 888888888888888888887 56654 34444433
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.94 E-value=2.2e-26 Score=256.55 Aligned_cols=185 Identities=14% Similarity=0.232 Sum_probs=175.7
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCC--------hhhHHHHHHHHHHHHHhcCCCchh
Q 046257 445 VAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAP--------SAAVEQGKQFHACSIKAKLNNALC 516 (838)
Q Consensus 445 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~ 516 (838)
..++.+|.+|++.|++++|+++|++|.+.|++||..||+++|.+|+.. .+.++.|.+++..|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 468899999999999999999999999999999999999999999754 145899999999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHh
Q 046257 517 VSSALVTMYSKKGNIESASEVFKRQR----KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGITFIGVITACT 592 (838)
Q Consensus 517 ~~~~li~~y~k~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~ 592 (838)
+||+||++|+++|++++|.++|++|. .||..+||+||.+|++.|+.++|.++|++|.+.|+.||..||++||.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 99999999999999999999999997 68999999999999999999999999999999999999999999999999
Q ss_pred ccCCHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHhc
Q 046257 593 HAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRA 630 (838)
Q Consensus 593 ~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~ 630 (838)
+.|++++|.++|++|. +.+..|+..+|+.+++.|.+.
T Consensus 187 ~~g~~d~A~~ll~~Mr-~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 187 DTKNADKVYKTLQRLR-DLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCHHHHHHHHHHHH-HHTSSBCHHHHHHHHHHHHSH
T ss_pred hCCCHHHHHHHHHHHH-HhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999998 669999999999999999864
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.94 E-value=4.9e-26 Score=253.77 Aligned_cols=184 Identities=9% Similarity=0.052 Sum_probs=159.9
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCC---------hHHHHHHHHHHHHhCCCCchh
Q 046257 145 VSWTSLLSGYARNKMNDRVLELFHRMQVEGIKPNSFTFSTVLGVLADEGI---------VATAVQVHTMVIKNGGEVVTS 215 (838)
Q Consensus 145 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~---------~~~a~~l~~~~~~~g~~~~~~ 215 (838)
..++.+|.+|++.|++++|+++|++|.+.|++||..||++||.+|++.+. ++.|.++|++|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 35788888899999999999999999999999999999999999886554 678888999999999889988
Q ss_pred HHHHHHHHhHcCCChhHHHHHHhcCCC----CCcchHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHh
Q 046257 216 VCNALISMYLKSKMVRDARAVFDGMED----RDSITWNSMVAGYVTNELHMEAFETFNNMGLAGAELTRSTFVSVIKLCA 291 (838)
Q Consensus 216 ~~~~li~~y~~~g~~~~A~~~f~~m~~----~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~ 291 (838)
+||+||.+|++.|++++|.++|++|.+ ||..+||++|.+|++.|+.++|.++|++|.+.|+.||..||++||.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 888888888888888888888888863 6888888888888888889999999999998899999999999999999
Q ss_pred ccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHcC
Q 046257 292 TTKELRLARQLHSQVLKNGIDFDHNIRTGLMVAYSKC 328 (838)
Q Consensus 292 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~ 328 (838)
+.|++++|.+++++|.+.|..|+..+|+.++..|...
T Consensus 187 ~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999888888888888887753
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=1e-22 Score=222.65 Aligned_cols=371 Identities=13% Similarity=0.175 Sum_probs=280.1
Q ss_pred HHHHhCCChHHHHHHHHHhhhCCCCCCh-hhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCCh
Q 046257 253 AGYVTNELHMEAFETFNNMGLAGAELTR-STFVSVIKLCATTKELRLARQLHSQVLKNGIDFDHNIRTGLMVAYSKCGKM 331 (838)
Q Consensus 253 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~ 331 (838)
..+.+.|++++|++.+.++.+. .|+. ..+..+...+...|+++.|...+...++.. +.+...+..+...|.+.|++
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 4455667777777777766554 3443 344445555666777777777777776654 45666777777777788888
Q ss_pred HHHHHHHHhccc--CCCeeehHHHHHHHHHcCChHHHHHHHHHhhhcCCCCCcccHHHHHhhCCCCChhHHHHHHHHhhc
Q 046257 332 EDASKIFSMMRE--MKDVVSWTAMISGHLQNGAIDLAVNFFCQMTREGVRPNGFTYSIILTAQPAVSPFQVHAHIIKTNY 409 (838)
Q Consensus 332 ~~A~~~f~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~ 409 (838)
++|...|+++.. +.+...|..+...+.+.|++++|++.|+++.+. .|+.....
T Consensus 84 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~----------------------- 138 (388)
T 1w3b_A 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVR----------------------- 138 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHH-----------------------
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHH-----------------------
Confidence 888877777643 234456777778888888888888888777663 34443332
Q ss_pred cCCcchhhHHHHHHHHcCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCC-HhhHHHH
Q 046257 410 EKSFSVGTALLNAYVKKGILDEAAKVFELIDE---KDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPN-EFTFSSV 485 (838)
Q Consensus 410 ~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~l 485 (838)
..+...|...|++++|.+.|+++.+ .+..+|+.+...|.+.|++++|++.|+++.+. .|+ ...+..+
T Consensus 139 -------~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l 209 (388)
T 1w3b_A 139 -------SDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL--DPNFLDAYINL 209 (388)
T ss_dssp -------HHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred -------HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCcHHHHHHH
Confidence 3466667777888888888876653 24567788888888888888888888887763 344 3445555
Q ss_pred HHHhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCCh
Q 046257 486 INACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHT 562 (838)
Q Consensus 486 l~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~ 562 (838)
-..+... +..+.+...+....+.. +.+..++..+...|.+.|++++|.+.|+++. +.+..+|+.+...|.+.|++
T Consensus 210 g~~~~~~-~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 287 (388)
T 1w3b_A 210 GNVLKEA-RIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSV 287 (388)
T ss_dssp HHHHHTT-TCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHc-CCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Confidence 5555566 77777777777776654 3356778889999999999999999999875 44678999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCC-CchHHHHHHHHHhcCCHHHHHHHHh
Q 046257 563 KKALEVFKEMRRQDLEFDGITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPT-MEHYSCMVDLYSRAGMLEKAMDIIN 641 (838)
Q Consensus 563 ~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~G~~~~A~~~~~ 641 (838)
++|++.|+++.+.. +++..++..+...+...|++++|..+++.+.+ +.|+ ...+..+..+|.+.|++++|.+.++
T Consensus 288 ~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 363 (388)
T 1w3b_A 288 AEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALE---VFPEFAAAHSNLASVLQQQGKLQEALMHYK 363 (388)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTT---SCTTCHHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999852 34567899999999999999999999999973 3454 5678999999999999999999999
Q ss_pred hCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCC
Q 046257 642 RMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGH 684 (838)
Q Consensus 642 ~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~ 684 (838)
++ ++++|+++.+|..++.+|...|+
T Consensus 364 ~a------------------~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 364 EA------------------IRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HH------------------HTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HH------------------HhhCCCCHHHHHhHHHHHHHccC
Confidence 88 78899999999999999988764
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.92 E-value=4e-22 Score=217.86 Aligned_cols=352 Identities=13% Similarity=0.152 Sum_probs=302.4
Q ss_pred HHHHhccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHHhccc--CCCeeehHHHHHHHHHcCChH
Q 046257 287 IKLCATTKELRLARQLHSQVLKNGIDFDHNIRTGLMVAYSKCGKMEDASKIFSMMRE--MKDVVSWTAMISGHLQNGAID 364 (838)
Q Consensus 287 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~~li~~~~~~g~~~ 364 (838)
...+.+.|++++|.+.+..+.+.. +.+...+..+...+...|+.++|...++.... +.+...|+.+...|.+.|+++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 345667899999999999998875 44566778888999999999999999988754 456678999999999999999
Q ss_pred HHHHHHHHhhhcCCCCCcccHHHHHhhCCCCChhHHHHHHHHhhccCCcchhhHHHHHHHHcCCHHHHHHHHHhcCC--C
Q 046257 365 LAVNFFCQMTREGVRPNGFTYSIILTAQPAVSPFQVHAHIIKTNYEKSFSVGTALLNAYVKKGILDEAAKVFELIDE--K 442 (838)
Q Consensus 365 ~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~--~ 442 (838)
+|++.|+++... .|+... .+..+...|.+.|++++|.+.|+++.+ |
T Consensus 85 ~A~~~~~~al~~--~p~~~~------------------------------~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 132 (388)
T 1w3b_A 85 EAIEHYRHALRL--KPDFID------------------------------GYINLAAALVAAGDMEGAVQAYVSALQYNP 132 (388)
T ss_dssp HHHHHHHHHHHH--CTTCHH------------------------------HHHHHHHHHHHHSCSSHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHc--CcchHH------------------------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 999999999874 354332 235688889999999999999998764 3
Q ss_pred -CcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCC-HhhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCchhHHHH
Q 046257 443 -DIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPN-EFTFSSVINACTAPSAAVEQGKQFHACSIKAKLNNALCVSSA 520 (838)
Q Consensus 443 -~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 520 (838)
+...|..+...|...|++++|++.|+++.+. .|+ ..++..+...+... +..+.+...+..+++.. +.+...+..
T Consensus 133 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~-p~~~~~~~~ 208 (388)
T 1w3b_A 133 DLYCVRSDLGNLLKALGRLEEAKACYLKAIET--QPNFAVAWSNLGCVFNAQ-GEIWLAIHHFEKAVTLD-PNFLDAYIN 208 (388)
T ss_dssp TCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcC-CCcHHHHHH
Confidence 4457888889999999999999999999874 454 56777777788888 99999999999998865 345778888
Q ss_pred HHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccCC
Q 046257 521 LVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITACTHAGL 596 (838)
Q Consensus 521 li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~ 596 (838)
+...|...|++++|...|++.. +.+..+|+.+...|...|++++|++.|+++.+ ..|+ ..++..+..++...|+
T Consensus 209 lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~ 286 (388)
T 1w3b_A 209 LGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGS 286 (388)
T ss_dssp HHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCC
Confidence 9999999999999999998765 45688999999999999999999999999999 5665 5688999999999999
Q ss_pred HHHHHHHHHHHHhcCCccCCCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHH
Q 046257 597 VDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLS 676 (838)
Q Consensus 597 ~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~ 676 (838)
+++|.++|+.+.+.. +++...+..+..++.+.|++++|.+.++++ +++.|+++.++..++
T Consensus 287 ~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a------------------l~~~p~~~~~~~~l~ 346 (388)
T 1w3b_A 287 VAEAEDCYNTALRLC--PTHADSLNNLANIKREQGNIEEAVRLYRKA------------------LEVFPEFAAAHSNLA 346 (388)
T ss_dssp HHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH------------------TTSCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHH------------------HhcCCCcHHHHHHHH
Confidence 999999999998542 346678999999999999999999999988 688999999999999
Q ss_pred HHHHhcCCchHHHHHHHHHhh
Q 046257 677 NMYAATGHWQERARVRKLMND 697 (838)
Q Consensus 677 ~~y~~~g~~~~a~~~~~~m~~ 697 (838)
.+|...|++++|.+.++++.+
T Consensus 347 ~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 347 SVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHh
Confidence 999999999999999999975
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.4e-20 Score=213.76 Aligned_cols=433 Identities=10% Similarity=-0.002 Sum_probs=230.4
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHc
Q 046257 147 WTSLLSGYARNKMNDRVLELFHRMQVEGIKPNSFTFSTVLGVLADEGIVATAVQVHTMVIKNGGEVVTSVCNALISMYLK 226 (838)
Q Consensus 147 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~ 226 (838)
|......+.+.|++++|+..|+++.+.. ||..+|..+..++...|++++|...+..+++.+ +.+..++..+..+|.+
T Consensus 9 ~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 85 (514)
T 2gw1_A 9 LKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEG 85 (514)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHH
Confidence 4445555556666666666666665543 455566666666666666666666666666554 3344555555555666
Q ss_pred CCChhHHHHHHhcCCC---CCcchHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHH
Q 046257 227 SKMVRDARAVFDGMED---RDSITWNSMVAGYVTNELHMEAFETFNNMGLAGAELTRSTFVSVIKLCATTKELRLARQLH 303 (838)
Q Consensus 227 ~g~~~~A~~~f~~m~~---~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 303 (838)
.|++++|...|+.+.. .+......++..+........+.+.+..+...+..|+...+..-...............+.
T Consensus 86 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (514)
T 2gw1_A 86 LGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMA 165 (514)
T ss_dssp TTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHH
T ss_pred HhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHH
Confidence 6666666555554432 1222223333333222222222222222221111111111111000000000000000000
Q ss_pred HHHHHhCC---------CCChhHHHHHHHHHHc---CCChHHHHHHHHhccc----------------CCCeeehHHHHH
Q 046257 304 SQVLKNGI---------DFDHNIRTGLMVAYSK---CGKMEDASKIFSMMRE----------------MKDVVSWTAMIS 355 (838)
Q Consensus 304 ~~~~~~g~---------~~~~~~~~~Li~~y~~---~g~~~~A~~~f~~~~~----------------~~~~~~~~~li~ 355 (838)
..+..... +.+...+..+...+.. .|++++|...|+++.. ..+...|..+..
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (514)
T 2gw1_A 166 SFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGI 245 (514)
T ss_dssp HHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHH
Confidence 00000000 1112222233333332 5666666666655542 112334555666
Q ss_pred HHHHcCChHHHHHHHHHhhhcCCCCCcccHHHHHhhCCCCChhHHHHHHHHhhccCCcchhhHHHHHHHHcCCHHHHHHH
Q 046257 356 GHLQNGAIDLAVNFFCQMTREGVRPNGFTYSIILTAQPAVSPFQVHAHIIKTNYEKSFSVGTALLNAYVKKGILDEAAKV 435 (838)
Q Consensus 356 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~ 435 (838)
.+...|++++|+..|+++.... |+.. ++..+...|...|++++|...
T Consensus 246 ~~~~~~~~~~A~~~~~~~l~~~--~~~~-------------------------------~~~~l~~~~~~~~~~~~A~~~ 292 (514)
T 2gw1_A 246 FKFLKNDPLGAHEDIKKAIELF--PRVN-------------------------------SYIYMALIMADRNDSTEYYNY 292 (514)
T ss_dssp HHHHSSCHHHHHHHHHHHHHHC--CCHH-------------------------------HHHHHHHHHHTSSCCTTGGGH
T ss_pred HHHHCCCHHHHHHHHHHHHhhC--ccHH-------------------------------HHHHHHHHHHHCCCHHHHHHH
Confidence 6666666666666666665532 2211 113455556666666666666
Q ss_pred HHhcCC---CCcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCC
Q 046257 436 FELIDE---KDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFHACSIKAKLN 512 (838)
Q Consensus 436 f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~ 512 (838)
|+.+.. .+...|..+...|...|++++|+..|++.... .|+
T Consensus 293 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~---------------------------------- 336 (514)
T 2gw1_A 293 FDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKEL--DPE---------------------------------- 336 (514)
T ss_dssp HHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHT--CSS----------------------------------
T ss_pred HHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--Chh----------------------------------
Confidence 665443 24455666666666667777777666666542 121
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh-------h
Q 046257 513 NALCVSSALVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDG-------I 582 (838)
Q Consensus 513 ~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-------~ 582 (838)
+...+..+...|.+.|++++|.+.|+++. +.+...|..+...|...|++++|++.|+++.+. .|+. .
T Consensus 337 -~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~ 413 (514)
T 2gw1_A 337 -NIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIEL--ENKLDGIYVGIA 413 (514)
T ss_dssp -CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHTSSSCSSCSH
T ss_pred -hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--hhccchHHHHHH
Confidence 23344455566777788888888877654 345677888888888888888888888888773 3332 2
Q ss_pred HHHHHHHHHhc---cCCHHHHHHHHHHHHhcCCccC-CCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 046257 583 TFIGVITACTH---AGLVDEGQQYFDIMVNEHHIYP-TMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAA 658 (838)
Q Consensus 583 t~~~ll~a~~~---~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~ 658 (838)
++..+..++.. .|++++|..+|+.+... .| +...+..+..+|.+.|++++|.+.++++
T Consensus 414 ~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a--------------- 475 (514)
T 2gw1_A 414 PLVGKATLLTRNPTVENFIEATNLLEKASKL---DPRSEQAKIGLAQMKLQQEDIDEAITLFEES--------------- 475 (514)
T ss_dssp HHHHHHHHHHTSCCTTHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHhhhhhcCCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHhcCHHHHHHHHHHH---------------
Confidence 67777788888 88888888888887743 34 3456777888888888888888888876
Q ss_pred HHHhccCCCCchhHHHH
Q 046257 659 CRLISLQPHDSAIYVLL 675 (838)
Q Consensus 659 c~~~~l~P~~~~~y~~l 675 (838)
++++|+++..+..+
T Consensus 476 ---~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 476 ---ADLARTMEEKLQAI 489 (514)
T ss_dssp ---HHHCSSHHHHHHHH
T ss_pred ---HHhccccHHHHHHH
Confidence 66777766665554
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.8e-20 Score=211.13 Aligned_cols=418 Identities=11% Similarity=0.058 Sum_probs=298.8
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 046257 247 TWNSMVAGYVTNELHMEAFETFNNMGLAGAELTRSTFVSVIKLCATTKELRLARQLHSQVLKNGIDFDHNIRTGLMVAYS 326 (838)
Q Consensus 247 ~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~ 326 (838)
.|......+.+.|++++|++.|+++.... |+..++..+..++.+.|+++.|.+.++.+++.. +.+..++..+..+|.
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHH
Confidence 45555667777788888888888777654 677777777777888888888888888877765 345667777888888
Q ss_pred cCCChHHHHHHHHhccc--CCCeeehHHHHHHHHHcCChHHHHHHHHHhhhcCCCCCcc-------------------cH
Q 046257 327 KCGKMEDASKIFSMMRE--MKDVVSWTAMISGHLQNGAIDLAVNFFCQMTREGVRPNGF-------------------TY 385 (838)
Q Consensus 327 ~~g~~~~A~~~f~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-------------------t~ 385 (838)
+.|++++|...|+++.. +.+......++..+........+.+.+..+...+..|+.. ..
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM 164 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHH
T ss_pred HHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHH
Confidence 88888888888877653 2233334444444444333333333333332222222221 11
Q ss_pred HHHHhhCCCCChhHHHHHHHHhhccCCcchhhHHHHHHHH---cCCHHHHHHHHHhcCC----------------C-Ccc
Q 046257 386 SIILTAQPAVSPFQVHAHIIKTNYEKSFSVGTALLNAYVK---KGILDEAAKVFELIDE----------------K-DIV 445 (838)
Q Consensus 386 ~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~y~~---~g~~~~A~~~f~~~~~----------------~-~~~ 445 (838)
...+..+........ ...+.+...+..+...+.. .|++++|...|+.+.+ + +..
T Consensus 165 ~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (514)
T 2gw1_A 165 ASFFGIFKPELTFAN------YDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAI 238 (514)
T ss_dssp HHHHTTSCCCCCCSS------CCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHH
T ss_pred HHHHhhcCHHHHHHH------hcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHH
Confidence 111111111100000 0000112222333333443 8999999999987654 1 345
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 046257 446 AWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMY 525 (838)
Q Consensus 446 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y 525 (838)
.|..+...|...|++++|+..|+++.... |+...+..+...+... +.++.+...+..+.+.. +.+..++..+...|
T Consensus 239 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 314 (514)
T 2gw1_A 239 SLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADR-NDSTEYYNYFDKALKLD-SNNSSVYYHRGQMN 314 (514)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTS-SCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHC-CCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHH
Confidence 78889999999999999999999998753 4466777777778887 89999999998888764 34567888999999
Q ss_pred HhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccCCHHHHH
Q 046257 526 SKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITACTHAGLVDEGQ 601 (838)
Q Consensus 526 ~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~ 601 (838)
.+.|++++|...|++.. +.+...|..+...|...|++++|++.|+++.+. .|+ ..++..+...+...|++++|.
T Consensus 315 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~ 392 (514)
T 2gw1_A 315 FILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKAL 392 (514)
T ss_dssp HHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHH
Confidence 99999999999999864 456789999999999999999999999999984 454 567888999999999999999
Q ss_pred HHHHHHHhcCCccCC----CchHHHHHHHHHh---cCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHH
Q 046257 602 QYFDIMVNEHHIYPT----MEHYSCMVDLYSR---AGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVL 674 (838)
Q Consensus 602 ~~~~~m~~~~~~~p~----~~~y~~lv~~l~r---~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~ 674 (838)
.+++.+.+...-.|+ ...+..+...+.+ .|++++|.+.++++ ++++|+++.++..
T Consensus 393 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a------------------~~~~~~~~~~~~~ 454 (514)
T 2gw1_A 393 KQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKA------------------SKLDPRSEQAKIG 454 (514)
T ss_dssp HHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHH------------------HHHCTTCHHHHHH
T ss_pred HHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHH------------------HHhCcccHHHHHH
Confidence 999998754222222 2278899999999 99999999999987 7789999999999
Q ss_pred HHHHHHhcCCchHHHHHHHHHhh
Q 046257 675 LSNMYAATGHWQERARVRKLMND 697 (838)
Q Consensus 675 l~~~y~~~g~~~~a~~~~~~m~~ 697 (838)
++.+|...|++++|...+++..+
T Consensus 455 la~~~~~~g~~~~A~~~~~~a~~ 477 (514)
T 2gw1_A 455 LAQMKLQQEDIDEAITLFEESAD 477 (514)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHH
Confidence 99999999999999999999876
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.3e-19 Score=202.08 Aligned_cols=312 Identities=13% Similarity=0.075 Sum_probs=200.8
Q ss_pred ChhHHHHHHHHHHcCCChHHHHHHHHhccc--CCCeeehHHHHHHHHHcCChHHHHHHHHHhhhcCCCCCcccHHHHHhh
Q 046257 314 DHNIRTGLMVAYSKCGKMEDASKIFSMMRE--MKDVVSWTAMISGHLQNGAIDLAVNFFCQMTREGVRPNGFTYSIILTA 391 (838)
Q Consensus 314 ~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a 391 (838)
+...+..+...|.+.|++++|..+|+++.. +.+...|..+...|.+.|++++|+..|+++.+.+ |+..
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~-------- 94 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK--MDFT-------- 94 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCH--------
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCcH--------
Confidence 344555555555555555555555555432 2344555555555666666666666665555432 2211
Q ss_pred CCCCChhHHHHHHHHhhccCCcchhhHHHHHHHHcCCHHHHHHHHHhcCCCC---c---chHHHHH------------HH
Q 046257 392 QPAVSPFQVHAHIIKTNYEKSFSVGTALLNAYVKKGILDEAAKVFELIDEKD---I---VAWSAML------------AG 453 (838)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~---~---~~~~~li------------~~ 453 (838)
.++..+...|.+.|++++|.+.|+.+.+.+ . ..|..++ ..
T Consensus 95 ----------------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 152 (450)
T 2y4t_A 95 ----------------------AARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALN 152 (450)
T ss_dssp ----------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 112345555556666666666665554322 1 3344332 23
Q ss_pred HHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHH
Q 046257 454 YAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIES 533 (838)
Q Consensus 454 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~ 533 (838)
|.+.|++++|++.|+++.+.. +.+...+..+...+... +..+.+...+..+.+.. +.+..++..+...|.+.|++++
T Consensus 153 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~ 229 (450)
T 2y4t_A 153 AFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKE-GEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHEL 229 (450)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT-TCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 556666666666666665431 22334444444455544 55555555555555443 3356677778888888888888
Q ss_pred HHHHHHhcC---CCCHHHHHHH------------HHHHHHcCChHHHHHHHHHHHHcCCCCCh-----hHHHHHHHHHhc
Q 046257 534 ASEVFKRQR---KRDLVSWNSM------------ICGYAQHGHTKKALEVFKEMRRQDLEFDG-----ITFIGVITACTH 593 (838)
Q Consensus 534 A~~~f~~~~---~~~~~~~~~l------------i~~~~~~g~~~~A~~l~~~m~~~g~~pd~-----~t~~~ll~a~~~ 593 (838)
|.+.|+++. +.+...|..+ ...|...|++++|++.|+++.+ +.|+. ..+..+..++.+
T Consensus 230 A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~~~~~l~~~~~~ 307 (450)
T 2y4t_A 230 SLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK--TEPSIAEYTVRSKERICHCFSK 307 (450)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCCSSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHHHH
Confidence 888888765 3345555555 7888888999999999999888 45663 367777888888
Q ss_pred cCCHHHHHHHHHHHHhcCCccC-CCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhH
Q 046257 594 AGLVDEGQQYFDIMVNEHHIYP-TMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIY 672 (838)
Q Consensus 594 ~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y 672 (838)
.|++++|..+++.+.+. .| +...|..+..+|.+.|++++|.+.++++ ++++|+++.++
T Consensus 308 ~g~~~~A~~~~~~a~~~---~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a------------------l~~~p~~~~~~ 366 (450)
T 2y4t_A 308 DEKPVEAIRVCSEVLQM---EPDNVNALKDRAEAYLIEEMYDEAIQDYETA------------------QEHNENDQQIR 366 (450)
T ss_dssp TTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH------------------HTTSSSCHHHH
T ss_pred CCCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHhcCHHHHHHHHHHH------------------HHhCcchHHHH
Confidence 99999999999888743 34 4577888888999999999999999887 78899999999
Q ss_pred HHHH------------HHHHhcC
Q 046257 673 VLLS------------NMYAATG 683 (838)
Q Consensus 673 ~~l~------------~~y~~~g 683 (838)
..++ +.|...|
T Consensus 367 ~~l~~~~~~~~~~~~~~~y~~lg 389 (450)
T 2y4t_A 367 EGLEKAQRLLKQSQKRDYYKILG 389 (450)
T ss_dssp HHHHHHHHHHHHHHSCCSGGGSC
T ss_pred HHHHHHHHHhhcccchhHHHHhC
Confidence 9998 6677777
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.84 E-value=8.6e-19 Score=200.20 Aligned_cols=420 Identities=11% Similarity=0.067 Sum_probs=276.2
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 046257 247 TWNSMVAGYVTNELHMEAFETFNNMGLAGAELTRSTFVSVIKLCATTKELRLARQLHSQVLKNGIDFDHNIRTGLMVAYS 326 (838)
Q Consensus 247 ~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~ 326 (838)
.|..+...+.+.|++++|++.|+++.... +.+..++..+..++.+.|++++|.+.++.+++.. +.+..++..+...|.
T Consensus 27 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~ 104 (537)
T 3fp2_A 27 QLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANE 104 (537)
T ss_dssp HHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHH
Confidence 34444555555555555555555555432 1233445555555555556666666655555554 234555555666666
Q ss_pred cCCChHHHHHHHHhcccCCCeeehHHHHHHHHHcCChHHHHHHHHHhhhc------CCCCCcccHHHHHhhCCCCChhHH
Q 046257 327 KCGKMEDASKIFSMMREMKDVVSWTAMISGHLQNGAIDLAVNFFCQMTRE------GVRPNGFTYSIILTAQPAVSPFQV 400 (838)
Q Consensus 327 ~~g~~~~A~~~f~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~pd~~t~~~ll~a~~~~~~~~~ 400 (838)
+.|++++|.+.|+.+. .+....+..+..+...+...+|+..++++... ...|+.......+..+....
T Consensus 105 ~~g~~~~A~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 178 (537)
T 3fp2_A 105 SLGNFTDAMFDLSVLS--LNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHL---- 178 (537)
T ss_dssp HHTCHHHHHHHHHHHC-------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHH----
T ss_pred HcCCHHHHHHHHHHHh--cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHH----
Confidence 6666666666665332 11222222333444445555666666665442 12222222222222111000
Q ss_pred HHHHHHhhccCCcc---hhhHHHHHH--------HHcCCHHHHHHHHHhcCCCCc----------chHHHHHHHHHhcCC
Q 046257 401 HAHIIKTNYEKSFS---VGTALLNAY--------VKKGILDEAAKVFELIDEKDI----------VAWSAMLAGYAQIGD 459 (838)
Q Consensus 401 ~~~~~~~~~~~~~~---~~~~Li~~y--------~~~g~~~~A~~~f~~~~~~~~----------~~~~~li~~~~~~g~ 459 (838)
...........+.. ....+...+ ...|++++|..+|+.+.+.+. .+|..+...+...|+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~ 258 (537)
T 3fp2_A 179 EVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNN 258 (537)
T ss_dssp HHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhccc
Confidence 00000000011111 122222222 223588999999998865332 246677788889999
Q ss_pred chHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHH
Q 046257 460 TEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFK 539 (838)
Q Consensus 460 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~ 539 (838)
+++|++.|+++... .|+...+..+-..+... +..+.+...+..+.+.. +.+..++..+...|.+.|++++|.+.|+
T Consensus 259 ~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 334 (537)
T 3fp2_A 259 LLDAQVLLQESINL--HPTPNSYIFLALTLADK-ENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQ 334 (537)
T ss_dssp HHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCS-SCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc--CCCchHHHHHHHHHHHh-cCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 99999999999874 57777777788888888 99999999999988865 3467788999999999999999999999
Q ss_pred hcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccC
Q 046257 540 RQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYP 615 (838)
Q Consensus 540 ~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p 615 (838)
+.. +.+...|..+...|...|++++|++.|+++.+. .|+ ..++..+...+...|++++|.++|+.+.+...-.+
T Consensus 335 ~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 412 (537)
T 3fp2_A 335 KAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQE 412 (537)
T ss_dssp HHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcch
Confidence 875 456789999999999999999999999999984 455 56788889999999999999999999875431112
Q ss_pred CC----chHHHHHHHHHhc----------CCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHh
Q 046257 616 TM----EHYSCMVDLYSRA----------GMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAA 681 (838)
Q Consensus 616 ~~----~~y~~lv~~l~r~----------G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~ 681 (838)
.. ..+..+..+|.+. |++++|.+.++++ ++++|+++.++..++.+|..
T Consensus 413 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a------------------~~~~p~~~~~~~~l~~~~~~ 474 (537)
T 3fp2_A 413 KIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKA------------------CELDPRSEQAKIGLAQLKLQ 474 (537)
T ss_dssp SCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHH------------------HHHCTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHH------------------HHhCCCCHHHHHHHHHHHHH
Confidence 11 1134456778888 9999999999987 78899999999999999999
Q ss_pred cCCchHHHHHHHHHhhC
Q 046257 682 TGHWQERARVRKLMNDR 698 (838)
Q Consensus 682 ~g~~~~a~~~~~~m~~~ 698 (838)
.|++++|.+.+++..+.
T Consensus 475 ~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 475 MEKIDEAIELFEDSAIL 491 (537)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHh
Confidence 99999999999998763
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.83 E-value=1.3e-18 Score=193.92 Aligned_cols=294 Identities=12% Similarity=0.134 Sum_probs=247.9
Q ss_pred CCeeehHHHHHHHHHcCChHHHHHHHHHhhhcCCCCCcccHHHHHhhCCCCChhHHHHHHHHhhccCCcchhhHHHHHHH
Q 046257 345 KDVVSWTAMISGHLQNGAIDLAVNFFCQMTREGVRPNGFTYSIILTAQPAVSPFQVHAHIIKTNYEKSFSVGTALLNAYV 424 (838)
Q Consensus 345 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~y~ 424 (838)
.+...|..+...|.+.|++++|+.+|+++.+. .|+. ..++..+...|.
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~------------------------------~~~~~~l~~~~~ 71 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDG--DPDN------------------------------YIAYYRRATVFL 71 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTC------------------------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcc------------------------------HHHHHHHHHHHH
Confidence 45677899999999999999999999999874 2322 223356888899
Q ss_pred HcCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHh----hHHHHHH----------
Q 046257 425 KKGILDEAAKVFELIDE---KDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEF----TFSSVIN---------- 487 (838)
Q Consensus 425 ~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----t~~~ll~---------- 487 (838)
+.|++++|...|+.+.+ .+...|..+...|.+.|++++|++.|+++.+. .|+.. .+..+..
T Consensus 72 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~ 149 (450)
T 2y4t_A 72 AMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQ 149 (450)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998764 35678999999999999999999999999874 56543 3333322
Q ss_pred --HhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCCh
Q 046257 488 --ACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHT 562 (838)
Q Consensus 488 --a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~ 562 (838)
.+... +.++.+...+..+.+.. +.+..++..+..+|.++|++++|.+.|+++. +.+..+|+.++..|...|++
T Consensus 150 a~~~~~~-~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 227 (450)
T 2y4t_A 150 ALNAFGS-GDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDH 227 (450)
T ss_dssp HHHHHHH-TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHc-CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 24444 88999999999888764 4577889999999999999999999999876 56789999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCChhH-HHHH------------HHHHhccCCHHHHHHHHHHHHhcCCccCC-----CchHHHHH
Q 046257 563 KKALEVFKEMRRQDLEFDGIT-FIGV------------ITACTHAGLVDEGQQYFDIMVNEHHIYPT-----MEHYSCMV 624 (838)
Q Consensus 563 ~~A~~l~~~m~~~g~~pd~~t-~~~l------------l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~y~~lv 624 (838)
++|++.|+++.+ ..|+... +..+ ..+|.+.|++++|..+|+.+.+. .|+ ..+|.+++
T Consensus 228 ~~A~~~~~~~~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~ 302 (450)
T 2y4t_A 228 ELSLSEVRECLK--LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERIC 302 (450)
T ss_dssp HHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--hCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHH
Confidence 999999999998 5676544 3333 78899999999999999999853 455 34789999
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhh
Q 046257 625 DLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMND 697 (838)
Q Consensus 625 ~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~ 697 (838)
.++.+.|++++|.+.++++ ++++|+++.+|..++.+|...|++++|...++++.+
T Consensus 303 ~~~~~~g~~~~A~~~~~~a------------------~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 357 (450)
T 2y4t_A 303 HCFSKDEKPVEAIRVCSEV------------------LQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQE 357 (450)
T ss_dssp HHHHTTTCHHHHHHHHHHH------------------HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHCCCHHHHHHHHHHH------------------HHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 9999999999999999987 678999999999999999999999999999999976
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.81 E-value=7.7e-18 Score=192.25 Aligned_cols=413 Identities=10% Similarity=0.062 Sum_probs=252.0
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHh
Q 046257 145 VSWTSLLSGYARNKMNDRVLELFHRMQVEGIKPNSFTFSTVLGVLADEGIVATAVQVHTMVIKNGGEVVTSVCNALISMY 224 (838)
Q Consensus 145 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y 224 (838)
..|..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|++++|.+.+..+++.+ +.+..++..+...|
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHH
Confidence 456677777788888888888888877654 2356677777777788888888888888887775 45667777788888
Q ss_pred HcCCChhHHHHHHhcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHhhhC------CCCCChhhHHHHHHHHhccCcHHH
Q 046257 225 LKSKMVRDARAVFDGMEDRDSITWNSMVAGYVTNELHMEAFETFNNMGLA------GAELTRSTFVSVIKLCATTKELRL 298 (838)
Q Consensus 225 ~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~------g~~p~~~t~~~ll~~~~~~~~~~~ 298 (838)
.+.|++++|...|+.+. .+....+..+..+...+...+|+..++++... ...|+...+...+ ...+.+.
T Consensus 104 ~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 178 (537)
T 3fp2_A 104 ESLGNFTDAMFDLSVLS-LNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFF----GIFDSHL 178 (537)
T ss_dssp HHHTCHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHH----HTSCHHH
T ss_pred HHcCCHHHHHHHHHHHh-cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHH----HhcChHH
Confidence 88888888888886432 22223333344555556667777777777543 1233333332222 2222222
Q ss_pred HHHHHHHHHHhCCCCChh---HHHHHHHHHHcC--------CChHHHHHHHHhccc-CCC-e-------eehHHHHHHHH
Q 046257 299 ARQLHSQVLKNGIDFDHN---IRTGLMVAYSKC--------GKMEDASKIFSMMRE-MKD-V-------VSWTAMISGHL 358 (838)
Q Consensus 299 a~~~~~~~~~~g~~~~~~---~~~~Li~~y~~~--------g~~~~A~~~f~~~~~-~~~-~-------~~~~~li~~~~ 358 (838)
+...+.. ....+.. ....+...+... |++++|..+|+++.+ .|+ . ..|..+...+.
T Consensus 179 ~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~ 254 (537)
T 3fp2_A 179 EVSSVNT----SSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHF 254 (537)
T ss_dssp HHHTSCC----CCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhh----ccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHH
Confidence 2211111 1111111 233333333222 355666666666542 121 1 12444445555
Q ss_pred HcCChHHHHHHHHHhhhcCCCCCcccHHHHHhhCCCCChhHHHHHHHHhhccCCcchhhHHHHHHHHcCCHHHHHHHHHh
Q 046257 359 QNGAIDLAVNFFCQMTREGVRPNGFTYSIILTAQPAVSPFQVHAHIIKTNYEKSFSVGTALLNAYVKKGILDEAAKVFEL 438 (838)
Q Consensus 359 ~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~ 438 (838)
..|++++|+..|++.... .|+...+ ..+...|...|++++|.+.|+.
T Consensus 255 ~~~~~~~A~~~~~~~~~~--~~~~~~~-------------------------------~~l~~~~~~~~~~~~A~~~~~~ 301 (537)
T 3fp2_A 255 LKNNLLDAQVLLQESINL--HPTPNSY-------------------------------IFLALTLADKENSQEFFKFFQK 301 (537)
T ss_dssp HTTCHHHHHHHHHHHHHH--CCCHHHH-------------------------------HHHHHHTCCSSCCHHHHHHHHH
T ss_pred hcccHHHHHHHHHHHHhc--CCCchHH-------------------------------HHHHHHHHHhcCHHHHHHHHHH
Confidence 666666666666666553 2221111 2344445555666666666554
Q ss_pred cCC---CCcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCch
Q 046257 439 IDE---KDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFHACSIKAKLNNAL 515 (838)
Q Consensus 439 ~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (838)
..+ .+...|..+...|...|++++|++.|++... .. +.+.
T Consensus 302 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~------------------------------------~~-~~~~ 344 (537)
T 3fp2_A 302 AVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQS------------------------------------LN-PENV 344 (537)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------------------------HC-TTCS
T ss_pred HhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH------------------------------------hC-CCCH
Confidence 432 2344555555556666666666665555543 22 2234
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh-------hHHH
Q 046257 516 CVSSALVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDG-------ITFI 585 (838)
Q Consensus 516 ~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-------~t~~ 585 (838)
..+..+...|.+.|++++|.+.|+++. +.+...|..+...|...|++++|++.|+++.+.. |+. ..+.
T Consensus 345 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~ 422 (537)
T 3fp2_A 345 YPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE--EVQEKIHVGIGPLI 422 (537)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHCSSCSSTTHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC--CcchhhHHHHHHHH
Confidence 556667788899999999999998775 4567789999999999999999999999988743 321 1234
Q ss_pred HHHHHHhcc----------CCHHHHHHHHHHHHhcCCccC-CCchHHHHHHHHHhcCCHHHHHHHHhhC
Q 046257 586 GVITACTHA----------GLVDEGQQYFDIMVNEHHIYP-TMEHYSCMVDLYSRAGMLEKAMDIINRM 643 (838)
Q Consensus 586 ~ll~a~~~~----------g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~G~~~~A~~~~~~m 643 (838)
.....+... |++++|..+|+.+.+. .| +...+..+..+|.+.|++++|.+.++++
T Consensus 423 ~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 488 (537)
T 3fp2_A 423 GKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL---DPRSEQAKIGLAQLKLQMEKIDEAIELFEDS 488 (537)
T ss_dssp HHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 445566666 9999999999998854 34 4567888999999999999999999987
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.78 E-value=2.2e-13 Score=160.19 Aligned_cols=596 Identities=12% Similarity=0.139 Sum_probs=330.4
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHcCCCCCcccHHHHHHHhccCCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhCC
Q 046257 48 RLLFEYCRDSLHQEALNLFLGIRRLGLPLFGSTLSSVLKTCGCLFDHVFGRQVHCECVKSGFARDVNVSTSLVDLYMRTN 127 (838)
Q Consensus 48 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g 127 (838)
-.+..+++.|++++++..-++ .|..|| |..+|+.+.+. +++.|.++-..+.+.. +.....+.+++.+...+
T Consensus 487 Kvi~~l~~~gq~~ki~~Y~~~---~~~~pD---y~~ll~~~~~~-~P~~~~~fa~~L~~~~--~p~~d~~~ivd~f~~~~ 557 (1630)
T 1xi4_A 487 KVIQCFAETGQVQKIVLYAKK---VGYTPD---WIFLLRNVMRI-SPDQGQQFAQMLVQDE--EPLADITQIVDVFMEYN 557 (1630)
T ss_pred HHHHHHHHhCCHHHHHHHHhc---cCCCcc---HHHHHHHHhhc-ChHHHHHHHHHHhcCC--CCccCHHHHHHHHHhcC
Confidence 456677777777777665332 344444 55566666543 3555555444433332 13333455666666666
Q ss_pred ChHHHHHHHccCCC------------------------------C---CcchHHHHHHHHHhCCCchHHHHHHHHHHH--
Q 046257 128 NVEDGRRVFDDMNE------------------------------S---NVVSWTSLLSGYARNKMNDRVLELFHRMQV-- 172 (838)
Q Consensus 128 ~~~~A~~~f~~m~~------------------------------~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-- 172 (838)
.+.++..++-+..+ . +..-|..+...|-++|-++.|++.|..+..
T Consensus 558 ~iq~~t~fLld~lk~n~~e~~~LQTrlle~Nl~~~pqvadail~~~~fthyd~~~IA~LCE~aGl~qrale~y~d~~dik 637 (1630)
T 1xi4_A 558 LIQQCTAFLLDALKNNRPSEGPLQTRLLEMNLMHAPQVADAILGNQMFTHYDRAHIAQLCEKAGLLQRALEHFTDLYDIK 637 (1630)
T ss_pred cHHHHHHHHHHHHhCCChhhhhHhHHHHHHhhccchhHHHHHHhcCccccccHHHHHHHHHHcCcHHHHHHhcCCHHHHH
Confidence 66666655533221 1 122366777788888888888888875521
Q ss_pred CCCC-CChhhHHHHHHHHhcCCChHHHHHHHHHHHHh-------------------------------------------
Q 046257 173 EGIK-PNSFTFSTVLGVLADEGIVATAVQVHTMVIKN------------------------------------------- 208 (838)
Q Consensus 173 ~g~~-p~~~t~~~ll~~~~~~g~~~~a~~l~~~~~~~------------------------------------------- 208 (838)
+-+. .....=..+..-+++ =..+.+.+.+..|++.
T Consensus 638 R~~~~~~~~~~~~l~~~fg~-l~~~~s~~~l~~~l~~n~~qnlq~vvqva~ky~~~lg~~~li~~fe~~~~~egl~y~l~ 716 (1630)
T 1xi4_A 638 RAVVHTHLLNPEWLVNYFGS-LSVEDSLECLRAMLSANIRQNLQICVQVASKYHEQLSTQSLIELFESFKSFEGLFYFLG 716 (1630)
T ss_pred HHhhccCcCCHHHHHHHHhc-CCHHHHHHHHHHHHHHhHhhhhhhhhhHHHHHHhhcCHHHHHHHHHHhcchhhHHHHHH
Confidence 1000 001111122222222 2234444444444431
Q ss_pred ---CCCCchhHHHHHHHHhHcCCChhHHHHHHhcCCC---------------CC----------------cch------H
Q 046257 209 ---GGEVVTSVCNALISMYLKSKMVRDARAVFDGMED---------------RD----------------SIT------W 248 (838)
Q Consensus 209 ---g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---------------~~----------------~~~------~ 248 (838)
.+..|+.+....|.+.++.|++.+.+++..+-.- +| .+. .
T Consensus 717 siv~~s~d~~vhfkyi~aa~~~~q~~everi~res~~y~~e~vk~flk~~kl~d~~pli~vCdr~~~v~~l~~yLy~n~~ 796 (1630)
T 1xi4_A 717 SIVNFSQDPDVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNL 796 (1630)
T ss_pred hhccccCChHHHHHHHHHHHHhCCchhhhHHhccCCCCCHHHHHHHHhhCCCCCCCCceeeccccccHHHHHHHHHhcCc
Confidence 1244777778889999999999988888766321 11 111 1
Q ss_pred HHHHHHHHhCCChHHHHHHHHHhhhCCCC-----------CChhhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCChhH
Q 046257 249 NSMVAGYVTNELHMEAFETFNNMGLAGAE-----------LTRSTFVSVIKLCATTKELRLARQLHSQVLKNGIDFDHNI 317 (838)
Q Consensus 249 n~li~~~~~~g~~~~A~~l~~~m~~~g~~-----------p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 317 (838)
...|..|++.-++..+-.+.-.+.+.... .+......++..+.+.+++..-..+++.-+..| ..++.+
T Consensus 797 ~~~ie~yv~~vnp~~~p~Vvg~lld~d~~e~~ik~ll~~v~~~~~~~~lv~~~ekrnrLkll~p~LE~~~~~g-~~~~~~ 875 (1630)
T 1xi4_A 797 QKYIEIYVQKVNPSRLPVVIGGLLDVDCSEDVIKNLILVVRGQFSTDELVAEVEKRNRLKLLLPWLEARIHEG-CEEPAT 875 (1630)
T ss_pred hhHHHHHHhccCCcccchhhhhhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCCHHH
Confidence 22455555544333333222222221111 111113334444455555555555666666666 457778
Q ss_pred HHHHHHHHHcCCChHHHH-H-------------------------------------------HHHhc----ccCCCeee
Q 046257 318 RTGLMVAYSKCGKMEDAS-K-------------------------------------------IFSMM----REMKDVVS 349 (838)
Q Consensus 318 ~~~Li~~y~~~g~~~~A~-~-------------------------------------------~f~~~----~~~~~~~~ 349 (838)
+|+|...|...++-.+.. + +|+.. .+..|...
T Consensus 876 hnalakiyid~n~npe~fL~~n~~yd~~~vgkyce~rDp~la~iay~~g~~d~eli~vt~~n~l~k~~arylv~r~d~~l 955 (1630)
T 1xi4_A 876 HNALAKIYIDSNNNPERFLRENPYYDSRVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSLSRYLVRRKDPEL 955 (1630)
T ss_pred HHHHHHHHhccCCCHHHHhhccCcccHHHHHHHHHhcCcchHHHHhcccCCcHHHHHHHhcchhHHHHHHHHHHhcCHHH
Confidence 888887777554322220 0 00000 00111112
Q ss_pred h--------------------------------HHHHHHHHHcCChHHHHHHHHHhhhcCCC--CCcccHHHHHhhCCCC
Q 046257 350 W--------------------------------TAMISGHLQNGAIDLAVNFFCQMTREGVR--PNGFTYSIILTAQPAV 395 (838)
Q Consensus 350 ~--------------------------------~~li~~~~~~g~~~~A~~l~~~m~~~g~~--pd~~t~~~ll~a~~~~ 395 (838)
| ...+.+|...|.+.+|++++++....+-. -+...-+.++.+..+.
T Consensus 956 W~~vl~~~n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka 1035 (1630)
T 1xi4_A 956 WGSVLLESNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA 1035 (1630)
T ss_pred HHHHhcCCcHHHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh
Confidence 2 33455677778888888888877743110 0011111111111111
Q ss_pred ChhHHHHHHHHhhccCCcchhhHHHHHHHHcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhcCCC
Q 046257 396 SPFQVHAHIIKTNYEKSFSVGTALLNAYVKKGILDEAAKVFELIDEKDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGV 475 (838)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 475 (838)
..-.....+.+.. ......+...+...|.+++|..+|++... .....+.++ -..|++++|.++..+..
T Consensus 1036 D~~Rv~eyI~kLd----~~d~~eIA~Iai~lglyEEAf~IYkKa~~-~~~A~~VLi---e~i~nldrAiE~Aervn---- 1103 (1630)
T 1xi4_A 1036 DRTRVMEYINRLD----NYDAPDIANIAISNELFEEAFAIFRKFDV-NTSAVQVLI---EHIGNLDRAYEFAERCN---- 1103 (1630)
T ss_pred ChhhHHHHHHHhh----hccHHHHHHHHHhCCCHHHHHHHHHHcCC-HHHHHHHHH---HHHhhHHHHHHHHHhcC----
Confidence 1111111111111 11123355566667777777777777531 111112222 25666777777766442
Q ss_pred CCCHhhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCHHHHHHHH
Q 046257 476 KPNEFTFSSVINACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQR--KRDLVSWNSMI 553 (838)
Q Consensus 476 ~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~--~~~~~~~~~li 553 (838)
+..+|..+-.++... +.+++|...+... .|...|..++..|.+.|++++|.+.+.... .++....+.++
T Consensus 1104 --~p~vWsqLAKAql~~-G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~La 1174 (1630)
T 1xi4_A 1104 --EPAVWSQLAKAQLQK-GMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELI 1174 (1630)
T ss_pred --CHHHHHHHHHHHHhC-CCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHH
Confidence 245566666666666 7777776666332 455566667777777777777777776544 22322333477
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHhcCCH
Q 046257 554 CGYAQHGHTKKALEVFKEMRRQDLEFDGITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGML 633 (838)
Q Consensus 554 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~ 633 (838)
.+|++.++.++ ++-| +. .|+...|..+...|...|++++|..+|... ..|..++..|.+.|++
T Consensus 1175 faYAKl~rlee-le~f---I~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA----------~ny~rLA~tLvkLge~ 1237 (1630)
T 1xi4_A 1175 FALAKTNRLAE-LEEF---IN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----------SNFGRLASTLVHLGEY 1237 (1630)
T ss_pred HHHHhhcCHHH-HHHH---Hh---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh----------hHHHHHHHHHHHhCCH
Confidence 77777777664 3333 21 445566777888899999999999999875 3799999999999999
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHH-----------HhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHh
Q 046257 634 EKAMDIINRMPFAASATVWRTVLAACR-----------LISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMN 696 (838)
Q Consensus 634 ~~A~~~~~~m~~~~~~~~w~~ll~~c~-----------~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~ 696 (838)
++|.+.+++. .+..+|.-+-.+|. .+.+ ..++..+..+++.|.+.|.|++|.++++.-.
T Consensus 1238 q~AIEaarKA---~n~~aWkev~~acve~~Ef~LA~~cgl~I-iv~~deLeeli~yYe~~G~feEAI~LlE~aL 1307 (1630)
T 1xi4_A 1238 QAAVDGARKA---NSTRTWKEVCFACVDGKEFRLAQMCGLHI-VVHADELEELINYYQDRGYFEELITMLEAAL 1307 (1630)
T ss_pred HHHHHHHHHh---CCHHHHHHHHHHHhhhhHHHHHHHHHHhh-hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 9999999987 46689998888873 2232 2377788899999999999999999986543
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.77 E-value=6.6e-14 Score=164.57 Aligned_cols=507 Identities=13% Similarity=0.098 Sum_probs=310.5
Q ss_pred CCcccHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcccHHHHHHHhccCC-ChhhHHHHHHHHHHhCCCCChhHHHHH
Q 046257 41 RNFVEYNRLLFEYCRDSLHQEALNLFLGIRRLGLPLFGSTLSSVLKTCGCLF-DHVFGRQVHCECVKSGFARDVNVSTSL 119 (838)
Q Consensus 41 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~l 119 (838)
++..+-+-|+...-+.++..-.+..++.-...| ..++.++|+|.+.|...+ +++.-+ +. |.+-=+.+
T Consensus 837 ~~~~~~~~lv~~~ekrnrLkll~p~LE~~~~~g-~~~~~~hnalakiyid~n~npe~fL-------~~----n~~yd~~~ 904 (1630)
T 1xi4_A 837 RGQFSTDELVAEVEKRNRLKLLLPWLEARIHEG-CEEPATHNALAKIYIDSNNNPERFL-------RE----NPYYDSRV 904 (1630)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHhccCCCHHHHh-------hc----cCcccHHH
Confidence 455556677777767777666667777777777 567788888888887554 333211 10 11111122
Q ss_pred HHHHHhCCChHHHHHHHccC------------------------CCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCC
Q 046257 120 VDLYMRTNNVEDGRRVFDDM------------------------NESNVVSWTSLLSGYARNKMNDRVLELFHRMQVEGI 175 (838)
Q Consensus 120 i~~y~~~g~~~~A~~~f~~m------------------------~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 175 (838)
+.-||...+...|.-.+++= .+.|...|+.++.- . -+.=.++.++-....+
T Consensus 905 vgkyce~rDp~la~iay~~g~~d~eli~vt~~n~l~k~~arylv~r~d~~lW~~vl~~---~--n~~RR~Lidqv~a~aL 979 (1630)
T 1xi4_A 905 VGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSLSRYLVRRKDPELWGSVLLE---S--NPYRRPLIDQVVQTAL 979 (1630)
T ss_pred HHHHHHhcCcchHHHHhcccCCcHHHHHHHhcchhHHHHHHHHHHhcCHHHHHHHhcC---C--cHHHHHHHHHHHHhhc
Confidence 23333333333333333221 11455556655521 1 1111122222211111
Q ss_pred --CCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhC--CCCchhHHHHHHHHhHcCCChhHHHHHHhcCCCCCcchHHHH
Q 046257 176 --KPNSFTFSTVLGVLADEGIVATAVQVHTMVIKNG--GEVVTSVCNALISMYLKSKMVRDARAVFDGMEDRDSITWNSM 251 (838)
Q Consensus 176 --~p~~~t~~~ll~~~~~~g~~~~a~~l~~~~~~~g--~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~n~l 251 (838)
.-|+.-.....+++...|...++.++++.++-.+ +..+....+.|+....+. +..+..+..+....-+ ...+
T Consensus 980 ~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eI 1055 (1630)
T 1xi4_A 980 SETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDI 1055 (1630)
T ss_pred ccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHH
Confidence 1233444667888889999999999999998442 124556777788777776 5566666666655322 4557
Q ss_pred HHHHHhCCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCCh
Q 046257 252 VAGYVTNELHMEAFETFNNMGLAGAELTRSTFVSVIKLCATTKELRLARQLHSQVLKNGIDFDHNIRTGLMVAYSKCGKM 331 (838)
Q Consensus 252 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~ 331 (838)
...+...|.+++|..+|++.. -.......++. ..+++++|.++.+++ .+..+|..+..++.+.|++
T Consensus 1056 A~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~ 1121 (1630)
T 1xi4_A 1056 ANIAISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMV 1121 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCH
Confidence 788889999999999999852 11112233322 668899998888765 4578899999999999999
Q ss_pred HHHHHHHHhcccCCCeeehHHHHHHHHHcCChHHHHHHHHHhhhcCCCCCcccHHHHHhhCCCCChhHHHHHHHHhhccC
Q 046257 332 EDASKIFSMMREMKDVVSWTAMISGHLQNGAIDLAVNFFCQMTREGVRPNGFTYSIILTAQPAVSPFQVHAHIIKTNYEK 411 (838)
Q Consensus 332 ~~A~~~f~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~ 411 (838)
++|...|.+. .|...|..++..+.+.|++++|++.|...++.. ++....
T Consensus 1122 kEAIdsYiKA---dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Id-------------------------- 1170 (1630)
T 1xi4_A 1122 KEAIDSYIKA---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVE-------------------------- 1170 (1630)
T ss_pred HHHHHHHHhc---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--cccccc--------------------------
Confidence 9999999764 577888899999999999999999998876643 222222
Q ss_pred CcchhhHHHHHHHHcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcC
Q 046257 412 SFSVGTALLNAYVKKGILDEAAKVFELIDEKDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTA 491 (838)
Q Consensus 412 ~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 491 (838)
+.++..|++.+++++...+. ..++...|..+...|...|++++|..+|... ..|..+...+.+
T Consensus 1171 -----t~LafaYAKl~rleele~fI---~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvk 1233 (1630)
T 1xi4_A 1171 -----TELIFALAKTNRLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVH 1233 (1630)
T ss_pred -----HHHHHHHHhhcCHHHHHHHH---hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHH
Confidence 22444555555555332221 2333444445555555555555555555543 244455555555
Q ss_pred ChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 046257 492 PSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQRKRDLVSWNSMICGYAQHGHTKKALEVFKE 571 (838)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 571 (838)
. +.++.|.+..... .+..+|..+..++...|++..|...... ..-+...+..++..|...|.+++|+.+++.
T Consensus 1234 L-ge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~-Iiv~~deLeeli~yYe~~G~feEAI~LlE~ 1305 (1630)
T 1xi4_A 1234 L-GEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVHADELEELINYYQDRGYFEELITMLEA 1305 (1630)
T ss_pred h-CCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh-hhcCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5 5555555554433 2345555555556666777777766554 223444566778888888888888888877
Q ss_pred HHHcCCCCCh-hHH--HHHHHHHhccCCHHHHHHHHHHHHhcCCccC------CCchHHHHHHHHHhcCCHHHHHHHHhh
Q 046257 572 MRRQDLEFDG-ITF--IGVITACTHAGLVDEGQQYFDIMVNEHHIYP------TMEHYSCMVDLYSRAGMLEKAMDIINR 642 (838)
Q Consensus 572 m~~~g~~pd~-~t~--~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p------~~~~y~~lv~~l~r~G~~~~A~~~~~~ 642 (838)
.+. +.|.+ ..| ...+.+-.+-+++.|+.++|..-. .++| +..+|.-++-+|.+.|+++.|...+-+
T Consensus 1306 aL~--LeraH~gmftELaiLyaKy~peklmEhlk~f~~ri---ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~ 1380 (1630)
T 1xi4_A 1306 ALG--LERAHMGMFTELAILYSKFKPQKMREHLELFWSRV---NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMN 1380 (1630)
T ss_pred Hhc--cChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhc---ccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHh
Confidence 765 44543 233 455555556667777777776433 3333 345688888899999999988865544
Q ss_pred C
Q 046257 643 M 643 (838)
Q Consensus 643 m 643 (838)
-
T Consensus 1381 h 1381 (1630)
T 1xi4_A 1381 H 1381 (1630)
T ss_pred c
Confidence 3
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.75 E-value=6.8e-16 Score=165.68 Aligned_cols=312 Identities=13% Similarity=0.131 Sum_probs=237.9
Q ss_pred eehHHHHHHHHHcCChHHHHHHHHHhhhcCCCCCcccHHHHHhhCCCCChhHHHHHHHHhhccCCcchhhHHHHHHHHcC
Q 046257 348 VSWTAMISGHLQNGAIDLAVNFFCQMTREGVRPNGFTYSIILTAQPAVSPFQVHAHIIKTNYEKSFSVGTALLNAYVKKG 427 (838)
Q Consensus 348 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~y~~~g 427 (838)
..|..+...+.+.|++++|+..|+++... .|+.. .++..+...|...|
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~------------------------------~~~~~~a~~~~~~~ 51 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDG--DPDNY------------------------------IAYYRRATVFLAMG 51 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCH------------------------------HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccH------------------------------HHHHHHHHHHHHcc
Confidence 34556667777788888888888877763 23221 12245677788888
Q ss_pred CHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCC---CHh-hHHHH------------HHH
Q 046257 428 ILDEAAKVFELIDE---KDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKP---NEF-TFSSV------------INA 488 (838)
Q Consensus 428 ~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~-t~~~l------------l~a 488 (838)
++++|...|+...+ .+...|..+...|.+.|++++|+..|+++.+. .| +.. .+..+ ...
T Consensus 52 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 129 (359)
T 3ieg_A 52 KSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALD 129 (359)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888887653 35567888888888888888888888888764 45 332 22222 234
Q ss_pred hcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHH
Q 046257 489 CTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKA 565 (838)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A 565 (838)
+... +..+.+...+..+.+.. +.+...+..+...|.+.|++++|.+.|++.. +.+...|..+...|...|++++|
T Consensus 130 ~~~~-~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 207 (359)
T 3ieg_A 130 AFDG-ADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELS 207 (359)
T ss_dssp HHHT-TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHc-cCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 4455 88888888888887764 3467788889999999999999999998875 45788999999999999999999
Q ss_pred HHHHHHHHHcCCCCChh-HHH------------HHHHHHhccCCHHHHHHHHHHHHhcCCccCCC-----chHHHHHHHH
Q 046257 566 LEVFKEMRRQDLEFDGI-TFI------------GVITACTHAGLVDEGQQYFDIMVNEHHIYPTM-----EHYSCMVDLY 627 (838)
Q Consensus 566 ~~l~~~m~~~g~~pd~~-t~~------------~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-----~~y~~lv~~l 627 (838)
++.|++..+ ..|+.. ++. .+...+...|++++|..+++.+.+.. |+. ..+..+...+
T Consensus 208 ~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~~~~la~~~ 282 (359)
T 3ieg_A 208 LSEVRECLK--LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE---PSVAEYTVRSKERICHCF 282 (359)
T ss_dssp HHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh--hCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCchHHHHHHHHHHHHHH
Confidence 999999998 456543 222 23566889999999999999988543 443 2355678899
Q ss_pred HhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhhCCCccCCcee
Q 046257 628 SRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMNDRKVKKEAGYS 707 (838)
Q Consensus 628 ~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~~~~~s 707 (838)
.+.|++++|.+.+++. ++++|+++..+..++.+|...|++++|.+.+++..+.
T Consensus 283 ~~~~~~~~A~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--------- 335 (359)
T 3ieg_A 283 SKDEKPVEAIRICSEV------------------LQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH--------- 335 (359)
T ss_dssp HHTTCHHHHHHHHHHH------------------HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT---------
T ss_pred HHccCHHHHHHHHHHH------------------HHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---------
Confidence 9999999999999987 7789999999999999999999999999999998763
Q ss_pred EEEECCEEEEEeeCCCCCCChHHHHHHHHHHHHHHHH
Q 046257 708 WIEVKNKTYSFLAGDISHPQSNQIYSKLEELSTRLKD 744 (838)
Q Consensus 708 ~i~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~~ 744 (838)
.|....+...+.++...+++
T Consensus 336 -----------------~p~~~~~~~~l~~~~~~~~~ 355 (359)
T 3ieg_A 336 -----------------NENDQQIREGLEKAQRLLKQ 355 (359)
T ss_dssp -----------------CTTCHHHHHHHHHHHHHHHH
T ss_pred -----------------CCCChHHHHHHHHHHHHHHH
Confidence 35556666677766665543
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.5e-15 Score=161.18 Aligned_cols=324 Identities=10% Similarity=0.024 Sum_probs=211.5
Q ss_pred cchHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 046257 245 SITWNSMVAGYVTNELHMEAFETFNNMGLAGAELTRSTFVSVIKLCATTKELRLARQLHSQVLKNGIDFDHNIRTGLMVA 324 (838)
Q Consensus 245 ~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~ 324 (838)
+..|..+...+...|++++|++.|++..+.. +.+..++..+...+...|+++.|...++.+++..
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------------- 67 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-------------- 67 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------------
Confidence 3445566666666777777777766665432 1223344444445555555555555555554442
Q ss_pred HHcCCChHHHHHHHHhcccCCCeeehHHHHHHHHHcCChHHHHHHHHHhhhcCCCC---CcccHHHHHhhCCCCChhHHH
Q 046257 325 YSKCGKMEDASKIFSMMREMKDVVSWTAMISGHLQNGAIDLAVNFFCQMTREGVRP---NGFTYSIILTAQPAVSPFQVH 401 (838)
Q Consensus 325 y~~~g~~~~A~~~f~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---d~~t~~~ll~a~~~~~~~~~~ 401 (838)
+.+...|..+...|...|++++|...|++..+. .| +.......+..
T Consensus 68 -------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~---------- 116 (359)
T 3ieg_A 68 -------------------MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVK---------- 116 (359)
T ss_dssp -------------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHH----------
T ss_pred -------------------CCcchHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHH----------
Confidence 223344555555555555555555555555442 22 11111000000
Q ss_pred HHHHHhhccCCcchhhHHHHHHHHcCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCC
Q 046257 402 AHIIKTNYEKSFSVGTALLNAYVKKGILDEAAKVFELIDE---KDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPN 478 (838)
Q Consensus 402 ~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 478 (838)
+ ........+...+...|++++|.+.|+.+.+ .+...|..+...|...|++++|++.|+++... .|+
T Consensus 117 --~------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~ 186 (359)
T 3ieg_A 117 --A------DEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKL--KSD 186 (359)
T ss_dssp --H------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CSC
T ss_pred --H------HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCC
Confidence 0 0000112345677888888888888887653 35567888888888888888888888887753 232
Q ss_pred HhhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHH-----
Q 046257 479 EFTFSSVINACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQR---KRDLVSWN----- 550 (838)
Q Consensus 479 ~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~----- 550 (838)
+...+..+...|.+.|++++|.+.|++.. +.+...|.
T Consensus 187 -----------------------------------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 231 (359)
T 3ieg_A 187 -----------------------------------NTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQV 231 (359)
T ss_dssp -----------------------------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred -----------------------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHH
Confidence 23344456667888888999888888765 33444443
Q ss_pred -------HHHHHHHHcCChHHHHHHHHHHHHcCCCCChh-----HHHHHHHHHhccCCHHHHHHHHHHHHhcCCccC-CC
Q 046257 551 -------SMICGYAQHGHTKKALEVFKEMRRQDLEFDGI-----TFIGVITACTHAGLVDEGQQYFDIMVNEHHIYP-TM 617 (838)
Q Consensus 551 -------~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-----t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~ 617 (838)
.+...+...|++++|++.|+++.+. .|+.. .+..+..++.+.|++++|..+++...+. .| +.
T Consensus 232 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~---~~~~~ 306 (359)
T 3ieg_A 232 KKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM---EPDNV 306 (359)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CcccH
Confidence 2366789999999999999999984 46542 2445677889999999999999999854 35 56
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhc
Q 046257 618 EHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAAT 682 (838)
Q Consensus 618 ~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~ 682 (838)
..+..+..+|.+.|++++|.+.++++ ++++|+++.++..|..++...
T Consensus 307 ~~~~~~~~~~~~~g~~~~A~~~~~~a------------------~~~~p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 307 NALKDRAEAYLIEEMYDEAIQDYEAA------------------QEHNENDQQIREGLEKAQRLL 353 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH------------------HTTCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH------------------HhcCCCChHHHHHHHHHHHHH
Confidence 78889999999999999999999987 788998988888887776543
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=6.4e-15 Score=156.13 Aligned_cols=285 Identities=14% Similarity=0.058 Sum_probs=212.7
Q ss_pred CCChhHHHHHHHHHHcCCChHHHHHHHHhccc--CCCeeehHHHHHHHHHcCChHHHHHHHHHhhhcCCCCCcccHHHHH
Q 046257 312 DFDHNIRTGLMVAYSKCGKMEDASKIFSMMRE--MKDVVSWTAMISGHLQNGAIDLAVNFFCQMTREGVRPNGFTYSIIL 389 (838)
Q Consensus 312 ~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll 389 (838)
+.+..++..+...+...|++++|.++|+++.. +.+...+..++..+.+.|++++|..+++++.+. .|+.
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~------- 89 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDL--YPSN------- 89 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTS-------
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCC-------
Confidence 44556666667777777777777777777643 334455666677777778888888888777663 2221
Q ss_pred hhCCCCChhHHHHHHHHhhccCCcchhhHHHHHHHHcC-CHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCchHHHH
Q 046257 390 TAQPAVSPFQVHAHIIKTNYEKSFSVGTALLNAYVKKG-ILDEAAKVFELIDE---KDIVAWSAMLAGYAQIGDTEGAVK 465 (838)
Q Consensus 390 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~y~~~g-~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 465 (838)
..++..+...|...| ++++|.+.|+...+ .+...|..+...|...|++++|++
T Consensus 90 -----------------------~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 146 (330)
T 3hym_B 90 -----------------------PVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMA 146 (330)
T ss_dssp -----------------------THHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHH
T ss_pred -----------------------HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHH
Confidence 112245666677777 77888887776643 245678888888888888888888
Q ss_pred HHHHhhcCCCCCCHhhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---
Q 046257 466 IYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQR--- 542 (838)
Q Consensus 466 l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~--- 542 (838)
.|+++.+. .|+ +...+..+...|...|++++|.+.|++..
T Consensus 147 ~~~~a~~~--~~~-----------------------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 189 (330)
T 3hym_B 147 AYFTAAQL--MKG-----------------------------------CHLPMLYIGLEYGLTNNSKLAERFFSQALSIA 189 (330)
T ss_dssp HHHHHHHH--TTT-----------------------------------CSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHh--ccc-----------------------------------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 88877653 222 22333446667889999999999998765
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC--------CCChhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcc
Q 046257 543 KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDL--------EFDGITFIGVITACTHAGLVDEGQQYFDIMVNEHHIY 614 (838)
Q Consensus 543 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~--------~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~ 614 (838)
+.+...|..+...|...|++++|++.|++..+..- ..+..++..+..++...|++++|..+++...+.. +
T Consensus 190 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~ 267 (330)
T 3hym_B 190 PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI--P 267 (330)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--T
T ss_pred CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC--c
Confidence 45678999999999999999999999999987421 2234688899999999999999999999988542 2
Q ss_pred CCCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHH-HhcCCc
Q 046257 615 PTMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMY-AATGHW 685 (838)
Q Consensus 615 p~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y-~~~g~~ 685 (838)
.+...+..+..+|.+.|++++|.+.++++ ++++|+++..+..++.+| ...|+.
T Consensus 268 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a------------------l~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 268 QNASTYSAIGYIHSLMGNFENAVDYFHTA------------------LGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp TCSHHHHHHHHHHHHHTCHHHHHHHHHTT------------------TTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred cchHHHHHHHHHHHHhccHHHHHHHHHHH------------------HccCCCchHHHHHHHHHHHHHhCch
Confidence 35678889999999999999999999998 788999999999999988 455553
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.70 E-value=1.4e-14 Score=153.56 Aligned_cols=278 Identities=14% Similarity=0.103 Sum_probs=114.9
Q ss_pred chhhHHhhccCCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcccHHHHHHHhccCCChhhHHHHHHHHHHh
Q 046257 28 SKKDQSLFDRSPQRNFVEYNRLLFEYCRDSLHQEALNLFLGIRRLGLPLFGSTLSSVLKTCGCLFDHVFGRQVHCECVKS 107 (838)
Q Consensus 28 ~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 107 (838)
.++|...|++++.|. .|..|..++...|++.+|++.|.+ .+|..+|..++.+|...|++++|...+...++.
T Consensus 19 ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~ 90 (449)
T 1b89_A 19 LDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKK 90 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 678999999997764 899999999999999999999976 367789999999999999999999988877774
Q ss_pred CCCCChhHHHHHHHHHHhCCChHHHHHHHccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHH
Q 046257 108 GFARDVNVSTSLVDLYMRTNNVEDGRRVFDDMNESNVVSWTSLLSGYARNKMNDRVLELFHRMQVEGIKPNSFTFSTVLG 187 (838)
Q Consensus 108 g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 187 (838)
.+++.+.+.|+.+|.++|+++++.++|+. |+..+|+.+...|...|.+++|..+|..+ ..|..+..
T Consensus 91 --~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~ 156 (449)
T 1b89_A 91 --ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLAS 156 (449)
T ss_dssp --------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCHHHHHH
T ss_pred --CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHH
Confidence 45678899999999999999999988864 77789999999999999999999999976 47888888
Q ss_pred HHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHcCCChhHHHHHHhcCCCCCcchHHHHHHHHHhCCChHHHHHH
Q 046257 188 VLADEGIVATAVQVHTMVIKNGGEVVTSVCNALISMYLKSKMVRDARAVFDGMEDRDSITWNSMVAGYVTNELHMEAFET 267 (838)
Q Consensus 188 ~~~~~g~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~l 267 (838)
++.+.|++++|.+.+..+ .++.+|..++.+|...|+++.|......+. .++.-...++..|.+.|++++|+.+
T Consensus 157 ~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eEai~l 229 (449)
T 1b89_A 157 TLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEELITM 229 (449)
T ss_dssp HHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHHHHHH
Confidence 888888888888888776 367788888888888888888877666544 3333344577777777777777777
Q ss_pred HHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHcC--CChHHHHHHHHhccc--
Q 046257 268 FNNMGLAGAELTRSTFVSVIKLCATTKELRLARQLHSQVLKNGIDFDHNIRTGLMVAYSKC--GKMEDASKIFSMMRE-- 343 (838)
Q Consensus 268 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~--g~~~~A~~~f~~~~~-- 343 (838)
++...... ......|+-+ .-.|++- +++.+..++|..-.+
T Consensus 230 Le~aL~le-~ah~~~ftel-----------------------------------~il~~ky~p~k~~ehl~~~~~~ini~ 273 (449)
T 1b89_A 230 LEAALGLE-RAHMGMFTEL-----------------------------------AILYSKFKPQKMREHLELFWSRVNIP 273 (449)
T ss_dssp HHHHTTST-TCCHHHHHHH-----------------------------------HHHHHTTCHHHHHHHHHHHSTTSCHH
T ss_pred HHHHhCCc-HHHHHHHHHH-----------------------------------HHHHHhcCHHHHHHHHHHHHHHhcCc
Confidence 77665322 1112222222 2222222 333344444433221
Q ss_pred -----CCCeeehHHHHHHHHHcCChHHHHHHH
Q 046257 344 -----MKDVVSWTAMISGHLQNGAIDLAVNFF 370 (838)
Q Consensus 344 -----~~~~~~~~~li~~~~~~g~~~~A~~l~ 370 (838)
..+...|..+.-.|.+.++++.|....
T Consensus 274 k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm 305 (449)
T 1b89_A 274 KVLRAAEQAHLWAELVFLYDKYEEYDNAIITM 305 (449)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhchHHHHHHHH
Confidence 124557888888888888888887643
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.70 E-value=2.1e-15 Score=159.91 Aligned_cols=304 Identities=13% Similarity=0.110 Sum_probs=136.7
Q ss_pred HhCCChHHHHHHHccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHH
Q 046257 124 MRTNNVEDGRRVFDDMNESNVVSWTSLLSGYARNKMNDRVLELFHRMQVEGIKPNSFTFSTVLGVLADEGIVATAVQVHT 203 (838)
Q Consensus 124 ~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~l~~ 203 (838)
-+.|++++|.+.+++++.|+ +|..|..++.+.|++++|++.|.+. +|..+|..++.++...|++++|...+.
T Consensus 14 ~~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 36788999999999996664 8999999999999999999999652 677899999999999999999999888
Q ss_pred HHHHhCCCCchhHHHHHHHHhHcCCChhHHHHHHhcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCChhhH
Q 046257 204 MVIKNGGEVVTSVCNALISMYLKSKMVRDARAVFDGMEDRDSITWNSMVAGYVTNELHMEAFETFNNMGLAGAELTRSTF 283 (838)
Q Consensus 204 ~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 283 (838)
..++. .+++.+.+.|+.+|.++|+++++.++|+. |+..+|+.+...|...|++++|..+|..+ ..|
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~ 151 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNF 151 (449)
T ss_dssp -------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCH
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhH
Confidence 77774 45678889999999999999998888853 67789999999999999999999999977 378
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHHhcccCCCeeehHHHHHHHHHcCCh
Q 046257 284 VSVIKLCATTKELRLARQLHSQVLKNGIDFDHNIRTGLMVAYSKCGKMEDASKIFSMMREMKDVVSWTAMISGHLQNGAI 363 (838)
Q Consensus 284 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~li~~~~~~g~~ 363 (838)
..+..++.+.|++++|.+.+..+ .++.+|..++.+|...|+++.|......+. .+......++..|.+.|++
T Consensus 152 ~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~--~~ad~l~~lv~~Yek~G~~ 223 (449)
T 1b89_A 152 GRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV--VHADELEELINYYQDRGYF 223 (449)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT--TCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH--hCHhhHHHHHHHHHHCCCH
Confidence 99999999999999999998887 378899999999999999999977766654 2223344688899999999
Q ss_pred HHHHHHHHHhhhcCCCCCc-ccHHHHHhhCCCCChhHHHHHHHHhhccCCcchhhHHHHHHH--HcCCHHHHHHHHHhcC
Q 046257 364 DLAVNFFCQMTREGVRPNG-FTYSIILTAQPAVSPFQVHAHIIKTNYEKSFSVGTALLNAYV--KKGILDEAAKVFELID 440 (838)
Q Consensus 364 ~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~y~--~~g~~~~A~~~f~~~~ 440 (838)
++|..+++..... .+.. ..| +-|.-.|+ +-+++.+..+.|..-.
T Consensus 224 eEai~lLe~aL~l--e~ah~~~f-------------------------------tel~il~~ky~p~k~~ehl~~~~~~i 270 (449)
T 1b89_A 224 EELITMLEAALGL--ERAHMGMF-------------------------------TELAILYSKFKPQKMREHLELFWSRV 270 (449)
T ss_dssp HHHHHHHHHHTTS--TTCCHHHH-------------------------------HHHHHHHHTTCHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHhCC--cHHHHHHH-------------------------------HHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 9999999887643 2211 111 22333333 3455666666665332
Q ss_pred C--------CCcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCC
Q 046257 441 E--------KDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAP 492 (838)
Q Consensus 441 ~--------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 492 (838)
. .+...|..+.-.|.+.++++.|....- ......-+...|--++.--+..
T Consensus 271 ni~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~--~h~~~a~~~~~f~~~~~kv~n~ 328 (449)
T 1b89_A 271 NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMM--NHPTDAWKEGQFKDIITKVANV 328 (449)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHH--HSTTTTCCHHHHHHHHHHCSST
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHH--hCChhhhhhHHHHHHHhchhHH
Confidence 2 256789999999999999999887542 2222334455555555444333
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.68 E-value=6.9e-15 Score=152.76 Aligned_cols=220 Identities=14% Similarity=0.104 Sum_probs=169.7
Q ss_pred HHHHHHHcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCChhhHHH
Q 046257 419 LLNAYVKKGILDEAAKVFELIDEKDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQ 498 (838)
Q Consensus 419 Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 498 (838)
+..+|...|++++|...++....++..++..+...|...|+.++|++.++++...+..|+...
T Consensus 40 l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~----------------- 102 (291)
T 3mkr_A 40 LYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTT----------------- 102 (291)
T ss_dssp HHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHH-----------------
T ss_pred HHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHH-----------------
Confidence 455666667776666666554334445566666666666666677776666665544454433
Q ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC
Q 046257 499 GKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQRKRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLE 578 (838)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 578 (838)
.+..+...|.+.|++++|.+.|++ ..+...|..++..|.+.|+.++|++.|+++.+. .
T Consensus 103 ------------------~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~ 160 (291)
T 3mkr_A 103 ------------------FLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ--D 160 (291)
T ss_dssp ------------------HHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C
T ss_pred ------------------HHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--C
Confidence 333445668899999999999998 668889999999999999999999999999994 5
Q ss_pred CChhHH---HHHHHHHhccCCHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHH
Q 046257 579 FDGITF---IGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTV 655 (838)
Q Consensus 579 pd~~t~---~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~l 655 (838)
|+.... .+.+..+...|++++|..+|+.+.+.. +.+...++.+..++.+.|++++|++.+++.
T Consensus 161 p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~eA~~~l~~a------------ 226 (291)
T 3mkr_A 161 EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC--SPTLLLLNGQAACHMAQGRWEAAEGVLQEA------------ 226 (291)
T ss_dssp TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH------------
T ss_pred cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH------------
Confidence 775322 123344455699999999999998653 346678999999999999999999999987
Q ss_pred HHHHHHhccCCCCchhHHHHHHHHHhcCCchH-HHHHHHHHhh
Q 046257 656 LAACRLISLQPHDSAIYVLLSNMYAATGHWQE-RARVRKLMND 697 (838)
Q Consensus 656 l~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~-a~~~~~~m~~ 697 (838)
++++|+++.++..++.++...|++++ +.++++++.+
T Consensus 227 ------l~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 227 ------LDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp ------HHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred ------HHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 88999999999999999999999987 5688888765
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=2e-14 Score=152.33 Aligned_cols=264 Identities=9% Similarity=0.078 Sum_probs=221.9
Q ss_pred cCCcchhhHHHHHHHHcCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCC-CHhhHHHH
Q 046257 410 EKSFSVGTALLNAYVKKGILDEAAKVFELIDE---KDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKP-NEFTFSSV 485 (838)
Q Consensus 410 ~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~l 485 (838)
+.+..+...+...+...|++++|.++|+.+.+ .+...+..++..+.+.|++++|+.+++++.+. .| +...+..+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l 96 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDL--YPSNPVSWFAV 96 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTSTHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHH
Confidence 34455566788889999999999999998764 35567788889999999999999999999874 34 34556666
Q ss_pred HHHhcCChh-hHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCC
Q 046257 486 INACTAPSA-AVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGH 561 (838)
Q Consensus 486 l~a~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~ 561 (838)
-..+... + ..+.+...+..+.+.. +.+...+..+...|...|++++|.+.|++.. +.+...|..+...|...|+
T Consensus 97 ~~~~~~~-~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~ 174 (330)
T 3hym_B 97 GCYYLMV-GHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNN 174 (330)
T ss_dssp HHHHHHS-CSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTC
T ss_pred HHHHHHh-hhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhh
Confidence 6666666 7 8999999999988765 3457788899999999999999999999876 4456788889999999999
Q ss_pred hHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHHHhcCC-------ccCCCchHHHHHHHHHhcCCH
Q 046257 562 TKKALEVFKEMRRQDLEFD-GITFIGVITACTHAGLVDEGQQYFDIMVNEHH-------IYPTMEHYSCMVDLYSRAGML 633 (838)
Q Consensus 562 ~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~-------~~p~~~~y~~lv~~l~r~G~~ 633 (838)
+++|++.|++..+ ..|+ ..++..+...+...|++++|..+++.+.+... .......+..+..+|.+.|++
T Consensus 175 ~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 252 (330)
T 3hym_B 175 SKLAERFFSQALS--IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252 (330)
T ss_dssp HHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH
Confidence 9999999999998 4555 57788899999999999999999998875321 123356889999999999999
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhh
Q 046257 634 EKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMND 697 (838)
Q Consensus 634 ~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~ 697 (838)
++|.+.+++. ++++|+++..+..++.+|...|++++|.+.+++..+
T Consensus 253 ~~A~~~~~~a------------------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 253 AEALDYHRQA------------------LVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp HHHHHHHHHH------------------HHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred HHHHHHHHHH------------------HhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 9999999987 788999999999999999999999999999997754
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=5e-17 Score=185.09 Aligned_cols=129 Identities=12% Similarity=0.151 Sum_probs=115.7
Q ss_pred cCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChh
Q 046257 510 KLNNALCVSSALVTMYSKKGNIESASEVFKRQR-------KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGI 582 (838)
Q Consensus 510 ~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ 582 (838)
....-..+||+||++|+|+|++++|.++|++|. .||++|||+||.||++.|+.++|.++|++|.+.|+.||.+
T Consensus 122 ~~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvv 201 (1134)
T 3spa_A 122 QLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLL 201 (1134)
T ss_dssp CCCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHH
Confidence 344456789999999999999999999997753 6899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCC-HHHHHHHHHHHHhcCCccCCCchHHHHHHHHHhcCCHHHHHHH
Q 046257 583 TFIGVITACTHAGL-VDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDI 639 (838)
Q Consensus 583 t~~~ll~a~~~~g~-~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~ 639 (838)
||+++|.++++.|. .++|.++|+.|. +.|+.||..+|+|++....|.+-++...++
T Consensus 202 TYntLI~glcK~G~~~e~A~~Ll~EM~-~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv 258 (1134)
T 3spa_A 202 SYAAALQCMGRQDQDAGTIERCLEQMS-QEGLKLQALFTAVLLSEEDRATVLKAVHKV 258 (1134)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHH-HHTCCSHHHHHHSCCCHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHH-HcCCCCChhhcccccChhhHHHHHHHHHHh
Confidence 99999999999997 578999999998 569999999999999988887655555444
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.65 E-value=2.9e-13 Score=152.33 Aligned_cols=364 Identities=13% Similarity=0.073 Sum_probs=230.3
Q ss_pred hhHHHHHHHHhHc----CCChhHHHHHHhcCCC-CCcchHHHHHHHHHh----CCChHHHHHHHHHhhhCCCCCChhhHH
Q 046257 214 TSVCNALISMYLK----SKMVRDARAVFDGMED-RDSITWNSMVAGYVT----NELHMEAFETFNNMGLAGAELTRSTFV 284 (838)
Q Consensus 214 ~~~~~~li~~y~~----~g~~~~A~~~f~~m~~-~~~~~~n~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~ 284 (838)
......|...|.. .+++++|...|+...+ .+...+..+...|.. .+++++|++.|++..+.| +...+.
T Consensus 39 ~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~ 115 (490)
T 2xm6_A 39 AKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQ 115 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 3333444444444 4555555555543322 234444455555555 555666666666555443 333344
Q ss_pred HHHHHHhc----cCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHc----CCChHHHHHHHHhcccCCCeeehHHHHHH
Q 046257 285 SVIKLCAT----TKELRLARQLHSQVLKNGIDFDHNIRTGLMVAYSK----CGKMEDASKIFSMMREMKDVVSWTAMISG 356 (838)
Q Consensus 285 ~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~----~g~~~~A~~~f~~~~~~~~~~~~~~li~~ 356 (838)
.+-..+.. .++.++|...++...+.| +...+..|..+|.. .++.++|.+.|++..+..+...+..+...
T Consensus 116 ~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~ 192 (490)
T 2xm6_A 116 NLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYM 192 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 44444444 456666666666666554 34455556666665 56677777777766545556666666666
Q ss_pred HHH----cCChHHHHHHHHHhhhcCCCCCcccHHHHHhhCCCCChhHHHHHHHHhhccCCcchhhHHHHHHHH----cCC
Q 046257 357 HLQ----NGAIDLAVNFFCQMTREGVRPNGFTYSIILTAQPAVSPFQVHAHIIKTNYEKSFSVGTALLNAYVK----KGI 428 (838)
Q Consensus 357 ~~~----~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~y~~----~g~ 428 (838)
|.. .++.++|++.|++..+.|. ... ...|..+|.. .++
T Consensus 193 y~~g~g~~~~~~~A~~~~~~a~~~~~---~~a-------------------------------~~~lg~~y~~g~g~~~~ 238 (490)
T 2xm6_A 193 YSRGLGVERNDAISAQWYRKSATSGD---ELG-------------------------------QLHLADMYYFGIGVTQD 238 (490)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTTC---HHH-------------------------------HHHHHHHHHHTSSSCCC
T ss_pred HhcCCCCCcCHHHHHHHHHHHHHCCC---HHH-------------------------------HHHHHHHHHcCCCCCCC
Confidence 666 6777777777777665431 111 1234455554 566
Q ss_pred HHHHHHHHHhcCC-CCcchHHHHHHHHHh----cCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCChhhHHHHHHHH
Q 046257 429 LDEAAKVFELIDE-KDIVAWSAMLAGYAQ----IGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFH 503 (838)
Q Consensus 429 ~~~A~~~f~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~ 503 (838)
+++|.+.|+...+ .+...+..+...|.. .++.++|++.|++..+.|
T Consensus 239 ~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~----------------------------- 289 (490)
T 2xm6_A 239 YTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG----------------------------- 289 (490)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT-----------------------------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC-----------------------------
Confidence 7777777765543 344555556666665 667777777777665432
Q ss_pred HHHHHhcCCCchhHHHHHHHHHHhc-----CCHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHH
Q 046257 504 ACSIKAKLNNALCVSSALVTMYSKK-----GNIESASEVFKRQR-KRDLVSWNSMICGYAQHG---HTKKALEVFKEMRR 574 (838)
Q Consensus 504 ~~~~~~~~~~~~~~~~~li~~y~k~-----g~~~~A~~~f~~~~-~~~~~~~~~li~~~~~~g---~~~~A~~l~~~m~~ 574 (838)
+......|..+|... ++.++|...|++.. ..+...+..+...|...| +.++|++.|++..+
T Consensus 290 ----------~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~ 359 (490)
T 2xm6_A 290 ----------NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAA 359 (490)
T ss_dssp ----------CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHH
T ss_pred ----------CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHH
Confidence 112223344455555 88999999988765 456778888888888766 78899999999998
Q ss_pred cCCCCChhHHHHHHHHHhc----cCCHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHh----cCCHHHHHHHHhhCCCC
Q 046257 575 QDLEFDGITFIGVITACTH----AGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSR----AGMLEKAMDIINRMPFA 646 (838)
Q Consensus 575 ~g~~pd~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r----~G~~~~A~~~~~~m~~~ 646 (838)
.| +...+..+...+.. .++.++|.++|+...+. + +...+..|..+|.+ .|++++|.+.+++.
T Consensus 360 ~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~-~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A--- 429 (490)
T 2xm6_A 360 KG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ-G---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTA--- 429 (490)
T ss_dssp TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH---
T ss_pred CC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC-C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH---
Confidence 64 56677778888877 78999999999998743 2 45677888899988 89999999999986
Q ss_pred CCHHHHHHHHHHHHHhccCC---CCchhHHHHHHHHHh
Q 046257 647 ASATVWRTVLAACRLISLQP---HDSAIYVLLSNMYAA 681 (838)
Q Consensus 647 ~~~~~w~~ll~~c~~~~l~P---~~~~~y~~l~~~y~~ 681 (838)
++.+| .++.....|+.++..
T Consensus 430 ---------------~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 430 ---------------STNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp ---------------HHHHCCHHHHHHHHHHHTTSCHH
T ss_pred ---------------HHCCCCCcCCHHHHHHHHhcCHh
Confidence 45553 366666677666654
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.62 E-value=1.7e-14 Score=155.72 Aligned_cols=293 Identities=12% Similarity=0.045 Sum_probs=215.0
Q ss_pred HHHcCCChHHHHH-HHHhccc--C--C--CeeehHHHHHHHHHcCChHHHHHHHHHhhhcCCCCCcccHHHHHhhCCCCC
Q 046257 324 AYSKCGKMEDASK-IFSMMRE--M--K--DVVSWTAMISGHLQNGAIDLAVNFFCQMTREGVRPNGFTYSIILTAQPAVS 396 (838)
Q Consensus 324 ~y~~~g~~~~A~~-~f~~~~~--~--~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~ 396 (838)
.|.-.|++++|.. .|++... . | +...|..+...+.+.|++++|+..|+++.+. .|+..
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~------------- 98 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQ--DPKHM------------- 98 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCH-------------
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCH-------------
Confidence 4556688999998 8886543 1 1 3567888999999999999999999999875 23322
Q ss_pred hhHHHHHHHHhhccCCcchhhHHHHHHHHcCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCchHHHHHHHHhhcC
Q 046257 397 PFQVHAHIIKTNYEKSFSVGTALLNAYVKKGILDEAAKVFELIDE---KDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSE 473 (838)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 473 (838)
.++..+...|.+.|++++|.+.|+.+.+ .+..+|..+...|...|++++|++.|+++...
T Consensus 99 -----------------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 161 (368)
T 1fch_A 99 -----------------EAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRY 161 (368)
T ss_dssp -----------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred -----------------HHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 2235678889999999999999997653 46778999999999999999999999999874
Q ss_pred CCCCCHhhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC--CC---CHHH
Q 046257 474 GVKPNEFTFSSVINACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQR--KR---DLVS 548 (838)
Q Consensus 474 g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~--~~---~~~~ 548 (838)
.|+.......+.... +. ..+ ......+...+ +.|++++|...|+++. .| +..+
T Consensus 162 --~~~~~~~~~~~~~~~---~~---------------~~~-~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~ 219 (368)
T 1fch_A 162 --TPAYAHLVTPAEEGA---GG---------------AGL-GPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDV 219 (368)
T ss_dssp --STTTGGGCC----------------------------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHH
T ss_pred --CcCcHHHHHHHHHHh---hh---------------hcc-cHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHH
Confidence 344332211110000 00 000 00111222334 8899999999998875 33 5788
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccC-CCchHHHHHHH
Q 046257 549 WNSMICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYP-TMEHYSCMVDL 626 (838)
Q Consensus 549 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~ 626 (838)
|..+...|...|++++|++.|+++.+. .|+ ..++..+...+...|++++|..+|+.+.+. .| +...+..+..+
T Consensus 220 ~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~l~~~ 294 (368)
T 1fch_A 220 QCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAAYRRALEL---QPGYIRSRYNLGIS 294 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHH
Confidence 999999999999999999999999984 555 578889999999999999999999998853 34 45678899999
Q ss_pred HHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCC-----------chhHHHHHHHHHhcCCchHHHHHHH
Q 046257 627 YSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHD-----------SAIYVLLSNMYAATGHWQERARVRK 693 (838)
Q Consensus 627 l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~-----------~~~y~~l~~~y~~~g~~~~a~~~~~ 693 (838)
|.+.|++++|.+.++++ +++.|++ +.+|..++.+|...|++++|..+++
T Consensus 295 ~~~~g~~~~A~~~~~~a------------------l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 295 CINLGAHREAVEHFLEA------------------LNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp HHHHTCHHHHHHHHHHH------------------HHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred HHHCCCHHHHHHHHHHH------------------HHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHH
Confidence 99999999999999987 4555555 7899999999999999999998876
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.62 E-value=6.2e-13 Score=151.25 Aligned_cols=178 Identities=11% Similarity=0.106 Sum_probs=134.1
Q ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC--CC-CH-HHHHHHHHHHHHcCChHHHHHHHHHHH
Q 046257 498 QGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQR--KR-DL-VSWNSMICGYAQHGHTKKALEVFKEMR 573 (838)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~--~~-~~-~~~~~li~~~~~~g~~~~A~~l~~~m~ 573 (838)
.+..++...++.-.+.+..++..++..+.+.|++++|.++|+++. .| +. ..|..++..+.+.|+.++|.++|++..
T Consensus 304 ~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al 383 (530)
T 2ooe_A 304 EAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAR 383 (530)
T ss_dssp HHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 555555555542233456777888888999999999999999875 34 43 589999999999999999999999998
Q ss_pred HcCCCCC-hhHHHHHHHH-HhccCCHHHHHHHHHHHHhcCCccC-CCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHH
Q 046257 574 RQDLEFD-GITFIGVITA-CTHAGLVDEGQQYFDIMVNEHHIYP-TMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASAT 650 (838)
Q Consensus 574 ~~g~~pd-~~t~~~ll~a-~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~ 650 (838)
+. .|+ ...|...... +...|+.++|..+|+...+. .| +...|..+++.+.+.|+.++|..++++.
T Consensus 384 ~~--~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~---~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~a------- 451 (530)
T 2ooe_A 384 ED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK---YGDIPEYVLAYIDYLSHLNEDNNTRVLFERV------- 451 (530)
T ss_dssp TC--TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHH-------
T ss_pred hc--cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHH---CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHH-------
Confidence 84 444 2333333322 23589999999999988854 35 4577889999999999999999999986
Q ss_pred HHHHHHHHHHHhccCCCCch----hHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 046257 651 VWRTVLAACRLISLQPHDSA----IYVLLSNMYAATGHWQERARVRKLMNDR 698 (838)
Q Consensus 651 ~w~~ll~~c~~~~l~P~~~~----~y~~l~~~y~~~g~~~~a~~~~~~m~~~ 698 (838)
++..|.++. .+..........|+.+++.++.+.+.+.
T Consensus 452 -----------l~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 452 -----------LTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp -----------HHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred -----------HhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 444454443 6666677788899999999999888753
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=6.3e-14 Score=156.97 Aligned_cols=361 Identities=12% Similarity=0.059 Sum_probs=230.5
Q ss_pred ChhHHHHHHHHHHcCCChHHHHHHHHhccc-----------CCCeeehHHHHHHHHHcCChHHHHHHHHHhhhcC---CC
Q 046257 314 DHNIRTGLMVAYSKCGKMEDASKIFSMMRE-----------MKDVVSWTAMISGHLQNGAIDLAVNFFCQMTREG---VR 379 (838)
Q Consensus 314 ~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~-----------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---~~ 379 (838)
....||.|...|...|+.++|.+.|++..+ ....++|+.+...|...|++++|...|++..... ..
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 345677777777777777777777765421 2345678889999999999999999998876421 01
Q ss_pred CCcccHHHHHhhCCCCChhHHHHHHHHhhccCCcchhhHHHHHHHHc--CCHHHHHHHHHhcCC--C-CcchHHHHHHH-
Q 046257 380 PNGFTYSIILTAQPAVSPFQVHAHIIKTNYEKSFSVGTALLNAYVKK--GILDEAAKVFELIDE--K-DIVAWSAMLAG- 453 (838)
Q Consensus 380 pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~y~~~--g~~~~A~~~f~~~~~--~-~~~~~~~li~~- 453 (838)
|.... ...++..+..++.+. +++++|...|++..+ | +...+..+...
T Consensus 130 ~~~~~---------------------------~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~ 182 (472)
T 4g1t_A 130 PYRIE---------------------------SPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIAS 182 (472)
T ss_dssp SSCCC---------------------------CHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred ccchh---------------------------hHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 10000 001122233334443 568999999997753 3 44455555544
Q ss_pred --HHhcCCchHHHHHHHHhhcCCCCCCH-hhHHHHHHHh---cCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHh
Q 046257 454 --YAQIGDTEGAVKIYRQLTSEGVKPNE-FTFSSVINAC---TAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSK 527 (838)
Q Consensus 454 --~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k 527 (838)
+...++.++|++.|++..+. .|+. ..+..+...+ ....+..+.+...+....... +.+..++..+...|.+
T Consensus 183 ~~l~~~~~~~~al~~~~~al~l--~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~ 259 (472)
T 4g1t_A 183 YRLDNWPPSQNAIDPLRQAIRL--NPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRR 259 (472)
T ss_dssp HHHHHSCCCCCTHHHHHHHHHH--CSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHH
T ss_pred HHhcCchHHHHHHHHHHHHhhc--CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHH
Confidence 34567889999999988763 4543 3333332222 222267778888888877765 4466778889999999
Q ss_pred cCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHc-------------------CChHHHHHHHHHHHHcCCCCC-hhHH
Q 046257 528 KGNIESASEVFKRQR---KRDLVSWNSMICGYAQH-------------------GHTKKALEVFKEMRRQDLEFD-GITF 584 (838)
Q Consensus 528 ~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~-------------------g~~~~A~~l~~~m~~~g~~pd-~~t~ 584 (838)
.|++++|...|++.. +.+..+|..+...|... +..++|+..|++..+ ..|+ ..++
T Consensus 260 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~ 337 (472)
T 4g1t_A 260 KDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADE--ANDNLFRVC 337 (472)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHH--HCTTTCCCH
T ss_pred cCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhh--cCCchhhhh
Confidence 999999999998875 44667788777766432 336788888998888 4555 4678
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhcCCccCCCc----hHHHHHH-HHHhcCCHHHHHHHHhhC-CCCCCHHHHHHHHHH
Q 046257 585 IGVITACTHAGLVDEGQQYFDIMVNEHHIYPTME----HYSCMVD-LYSRAGMLEKAMDIINRM-PFAASATVWRTVLAA 658 (838)
Q Consensus 585 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~----~y~~lv~-~l~r~G~~~~A~~~~~~m-~~~~~~~~w~~ll~~ 658 (838)
..+...+...|++++|..+|+...+. .|+.. .+..+.. .+...|+.++|++.+++. .+.|+...+...+..
T Consensus 338 ~~lg~~~~~~~~~~~A~~~~~kaL~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~ 414 (472)
T 4g1t_A 338 SILASLHALADQYEEAEYYFQKEFSK---ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDK 414 (472)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHH
T ss_pred hhHHHHHHHhccHHHHHHHHHHHHhc---CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHH
Confidence 88999999999999999999998743 33322 2333333 345789999999999865 467777666655554
Q ss_pred HH-----HhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhhCCCccCCceeEE
Q 046257 659 CR-----LISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMNDRKVKKEAGYSWI 709 (838)
Q Consensus 659 c~-----~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~~~~~s~i 709 (838)
.. .++.+|+++.+|..|+.+|...|++++|.+.+++..+.|-......+|+
T Consensus 415 l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 415 LQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 33 6788999999999999999999999999999999988776655556665
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.61 E-value=5.5e-14 Score=151.63 Aligned_cols=297 Identities=12% Similarity=0.092 Sum_probs=211.4
Q ss_pred HHhccCcHHHHHH-HHHHHHHhCC---CCChhHHHHHHHHHHcCCChHHHHHHHHhccc--CCCeeehHHHHHHHHHcCC
Q 046257 289 LCATTKELRLARQ-LHSQVLKNGI---DFDHNIRTGLMVAYSKCGKMEDASKIFSMMRE--MKDVVSWTAMISGHLQNGA 362 (838)
Q Consensus 289 ~~~~~~~~~~a~~-~~~~~~~~g~---~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~~li~~~~~~g~ 362 (838)
++...++++.|.. .+....+... ..+...+..+...|.+.|++++|...|+++.+ +.+...|..+...|.+.|+
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcC
Confidence 5556788888887 7776554432 11356688899999999999999999999875 3456778999999999999
Q ss_pred hHHHHHHHHHhhhcCCCCCcccHHHHHhhCCCCChhHHHHHHHHhhccCCcchhhHHHHHHHHcCCHHHHHHHHHhcCCC
Q 046257 363 IDLAVNFFCQMTREGVRPNGFTYSIILTAQPAVSPFQVHAHIIKTNYEKSFSVGTALLNAYVKKGILDEAAKVFELIDEK 442 (838)
Q Consensus 363 ~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~ 442 (838)
+++|+..|+++.+.. | .+..++..+...|...|++++|.+.|+.+...
T Consensus 114 ~~~A~~~~~~al~~~--~------------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 161 (368)
T 1fch_A 114 ELLAISALRRCLELK--P------------------------------DNQTALMALAVSFTNESLQRQACEILRDWLRY 161 (368)
T ss_dssp HHHHHHHHHHHHHHC--T------------------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcC--C------------------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999987642 2 23457888999999999999999999987643
Q ss_pred C---cchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCC-chhHH
Q 046257 443 D---IVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFHACSIKAKLNN-ALCVS 518 (838)
Q Consensus 443 ~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 518 (838)
+ ...+..+... ... ..+... +. .+..+... +..+.+...+..+++..... +..++
T Consensus 162 ~~~~~~~~~~~~~~-------~~~-----------~~~~~~-~~-~~~~~~~~-~~~~~A~~~~~~a~~~~p~~~~~~~~ 220 (368)
T 1fch_A 162 TPAYAHLVTPAEEG-------AGG-----------AGLGPS-KR-ILGSLLSD-SLFLEVKELFLAAVRLDPTSIDPDVQ 220 (368)
T ss_dssp STTTGGGCC----------------------------------C-TTHHHHHH-HHHHHHHHHHHHHHHHSTTSCCHHHH
T ss_pred CcCcHHHHHHHHHH-------hhh-----------hcccHH-HH-HHHHHhhc-ccHHHHHHHHHHHHHhCcCcccHHHH
Confidence 2 2222111000 000 000000 00 01111122 66666666666666554332 56777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhcc
Q 046257 519 SALVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITACTHA 594 (838)
Q Consensus 519 ~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~ 594 (838)
..+...|.+.|++++|...|+++. +.+..+|+.+...|...|++++|++.|+++.+. .|+ ..++..+..++...
T Consensus 221 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~ 298 (368)
T 1fch_A 221 CGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALEL--QPGYIRSRYNLGISCINL 298 (368)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHC
Confidence 888899999999999999998875 456889999999999999999999999999984 565 56888999999999
Q ss_pred CCHHHHHHHHHHHHhcCCccCC------------CchHHHHHHHHHhcCCHHHHHHHHhhC
Q 046257 595 GLVDEGQQYFDIMVNEHHIYPT------------MEHYSCMVDLYSRAGMLEKAMDIINRM 643 (838)
Q Consensus 595 g~~~~a~~~~~~m~~~~~~~p~------------~~~y~~lv~~l~r~G~~~~A~~~~~~m 643 (838)
|++++|..+|+.+.+. .|+ ...|..+..+|.+.|+.++|..+.++.
T Consensus 299 g~~~~A~~~~~~al~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 299 GAHREAVEHFLEALNM---QRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp TCHHHHHHHHHHHHHH---HHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHh---CCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHH
Confidence 9999999999998743 333 367899999999999999999998754
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.60 E-value=4.2e-14 Score=152.52 Aligned_cols=258 Identities=12% Similarity=0.085 Sum_probs=208.0
Q ss_pred CeeehHHHHHHHHHcCChHHHHHHHHHhhhcCCCCCcccHHHHHhhCCCCChhHHHHHHHHhhccCCcchhhHHHHHHHH
Q 046257 346 DVVSWTAMISGHLQNGAIDLAVNFFCQMTREGVRPNGFTYSIILTAQPAVSPFQVHAHIIKTNYEKSFSVGTALLNAYVK 425 (838)
Q Consensus 346 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~y~~ 425 (838)
+...|..+...+.+.|++++|+..|+++.... |+. ..++..+...|.+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~------------------------------~~~~~~lg~~~~~ 111 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD--PGD------------------------------AEAWQFLGITQAE 111 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTC------------------------------HHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cCC------------------------------HHHHHHHHHHHHH
Confidence 45568888899999999999999999988742 322 2233578888999
Q ss_pred cCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhh-----------HHHHHHHhcC
Q 046257 426 KGILDEAAKVFELIDE---KDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFT-----------FSSVINACTA 491 (838)
Q Consensus 426 ~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-----------~~~ll~a~~~ 491 (838)
.|++++|...|++..+ .+..+|..+...|.+.|++++|++.|+++.+. .|+... +..+...+..
T Consensus 112 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~ 189 (365)
T 4eqf_A 112 NENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVD 189 (365)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHCC-------------------C
T ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhh
Confidence 9999999999987753 45678999999999999999999999998773 333221 2223456666
Q ss_pred ChhhHHHHHHHHHHHHHhcCCC-chhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHH
Q 046257 492 PSAAVEQGKQFHACSIKAKLNN-ALCVSSALVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALE 567 (838)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~ 567 (838)
. +.++.+...+..+++..... +..++..+...|.+.|++++|.+.|++.. +.+..+|+.+...|...|++++|++
T Consensus 190 ~-g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 268 (365)
T 4eqf_A 190 S-SVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVE 268 (365)
T ss_dssp C-HHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred h-hhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 7 99999999999998876442 67889999999999999999999999875 5578899999999999999999999
Q ss_pred HHHHHHHcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCC-------------CchHHHHHHHHHhcCCH
Q 046257 568 VFKEMRRQDLEFD-GITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPT-------------MEHYSCMVDLYSRAGML 633 (838)
Q Consensus 568 l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-------------~~~y~~lv~~l~r~G~~ 633 (838)
.|+++.+ ..|+ ..++..+..++...|++++|..+|+.+.+. .|+ ...|..+...+...|+.
T Consensus 269 ~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 343 (365)
T 4eqf_A 269 AYTRALE--IQPGFIRSRYNLGISCINLGAYREAVSNFLTALSL---QRKSRNQQQVPHPAISGNIWAALRIALSLMDQP 343 (365)
T ss_dssp HHHHHHH--HCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH---HHCC------------CHHHHHHHHHHHHHTCH
T ss_pred HHHHHHh--cCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CcccCCCcccchhhhHHHHHHHHHHHHHHcCcH
Confidence 9999999 4565 678889999999999999999999998743 232 56789999999999999
Q ss_pred HHHHHHHhhC
Q 046257 634 EKAMDIINRM 643 (838)
Q Consensus 634 ~~A~~~~~~m 643 (838)
+.|.+..++-
T Consensus 344 ~~a~~~~~~~ 353 (365)
T 4eqf_A 344 ELFQAANLGD 353 (365)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHHHhh
Confidence 9999998864
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=4.8e-16 Score=177.16 Aligned_cols=151 Identities=9% Similarity=0.132 Sum_probs=127.8
Q ss_pred CCCChhHHHHHHHHHHhCCChHHHHHHHccCC-------CCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhh
Q 046257 109 FARDVNVSTSLVDLYMRTNNVEDGRRVFDDMN-------ESNVVSWTSLLSGYARNKMNDRVLELFHRMQVEGIKPNSFT 181 (838)
Q Consensus 109 ~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~-------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 181 (838)
...-..+||+||++|+++|++++|.++|++|. .||++|||+||.||++.|++++|.++|++|.+.|+.||..|
T Consensus 123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT 202 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH
Confidence 33445689999999999999999999997763 58999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCh-HHHHHHHHHHHHhCCCCchhHHHHHHHHhHcCCChhHHHHHHhcCCCC-----CcchHHHHHHHH
Q 046257 182 FSTVLGVLADEGIV-ATAVQVHTMVIKNGGEVVTSVCNALISMYLKSKMVRDARAVFDGMEDR-----DSITWNSMVAGY 255 (838)
Q Consensus 182 ~~~ll~~~~~~g~~-~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~-----~~~~~n~li~~~ 255 (838)
|+++|.++++.|+. ++|.+++++|.+.|+.||..+|++++..+.+.+-++..++++..+..+ .+.+.+.|...|
T Consensus 203 YntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~ 282 (1134)
T 3spa_A 203 YAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVY 282 (1134)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHH
Confidence 99999999999974 789999999999999999999999998888876666666665555431 133344455666
Q ss_pred HhCC
Q 046257 256 VTNE 259 (838)
Q Consensus 256 ~~~g 259 (838)
.+.+
T Consensus 283 s~d~ 286 (1134)
T 3spa_A 283 AKDG 286 (1134)
T ss_dssp CCCS
T ss_pred ccCC
Confidence 6554
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.59 E-value=5.6e-14 Score=145.87 Aligned_cols=248 Identities=12% Similarity=0.084 Sum_probs=185.1
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHhcccCCCeeehHHHHHHHHHcCChHHHHHHHHHhhhcCCCCCcccHHHHHhhCCCCC
Q 046257 317 IRTGLMVAYSKCGKMEDASKIFSMMREMKDVVSWTAMISGHLQNGAIDLAVNFFCQMTREGVRPNGFTYSIILTAQPAVS 396 (838)
Q Consensus 317 ~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~ 396 (838)
....+..+|...|+++.|...++... .++..++..+...+...|+.++|++.++++...+..|+..++.
T Consensus 36 ~~~~l~r~yi~~g~~~~al~~~~~~~-~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~---------- 104 (291)
T 3mkr_A 36 RDVFLYRAYLAQRKYGVVLDEIKPSS-APELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFL---------- 104 (291)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHSCTTS-CHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHH----------
T ss_pred HHHHHHHHHHHCCCHHHHHHHhcccC-ChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHH----------
Confidence 33456678888888888887776644 5666778888888899999999999999998877777765543
Q ss_pred hhHHHHHHHHhhccCCcchhhHHHHHHHHcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCC
Q 046257 397 PFQVHAHIIKTNYEKSFSVGTALLNAYVKKGILDEAAKVFELIDEKDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVK 476 (838)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 476 (838)
..+...|...|++++|.+.|+. ..+...+..++..|.+.|++++|.+.|+++.+. .
T Consensus 105 --------------------~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~ 160 (291)
T 3mkr_A 105 --------------------LMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ--D 160 (291)
T ss_dssp --------------------HHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C
T ss_pred --------------------HHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--C
Confidence 3466788899999999999998 457778999999999999999999999999874 3
Q ss_pred CCHhhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHH
Q 046257 477 PNEFTFSSVINACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMI 553 (838)
Q Consensus 477 p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li 553 (838)
|+.... .+. .+++..+...|++++|..+|+++. +.+...|+.+.
T Consensus 161 p~~~~~-~l~--------------------------------~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la 207 (291)
T 3mkr_A 161 EDATLT-QLA--------------------------------TAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQA 207 (291)
T ss_dssp TTCHHH-HHH--------------------------------HHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred cCcHHH-HHH--------------------------------HHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 554211 111 122333445678888888888775 45778888888
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccCCHHH-HHHHHHHHHhcCCccCCCchHHHHHHHHHhcC
Q 046257 554 CGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITACTHAGLVDE-GQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAG 631 (838)
Q Consensus 554 ~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~-a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G 631 (838)
.+|.+.|++++|++.|++.++ ..|+ ..++..++..+...|+.++ +.++++++.+. .|+-. .+.+...+.+
T Consensus 208 ~~~~~~g~~~eA~~~l~~al~--~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~---~P~~~---~~~d~~~~~~ 279 (291)
T 3mkr_A 208 ACHMAQGRWEAAEGVLQEALD--KDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA---HRSHP---FIKEYRAKEN 279 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH---CTTCH---HHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh---CCCCh---HHHHHHHHHH
Confidence 888888999999999988888 4565 5677788888888888765 56788877633 45433 2446677777
Q ss_pred CHHHHHHHH
Q 046257 632 MLEKAMDII 640 (838)
Q Consensus 632 ~~~~A~~~~ 640 (838)
.+++|..-|
T Consensus 280 ~fd~~~~~~ 288 (291)
T 3mkr_A 280 DFDRLVLQY 288 (291)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 777766544
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.59 E-value=5.9e-12 Score=141.58 Aligned_cols=332 Identities=13% Similarity=0.049 Sum_probs=200.6
Q ss_pred CCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHc----CCChhHHHHHHhcCCC-CCcchHHHHHHHHHh----CCChH
Q 046257 192 EGIVATAVQVHTMVIKNGGEVVTSVCNALISMYLK----SKMVRDARAVFDGMED-RDSITWNSMVAGYVT----NELHM 262 (838)
Q Consensus 192 ~g~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~----~g~~~~A~~~f~~m~~-~~~~~~n~li~~~~~----~g~~~ 262 (838)
.+++++|...+....+.| +...+..|...|.. .++.++|...|++..+ .+...+..+...|.. .++++
T Consensus 56 ~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~ 132 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKA 132 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHH
T ss_pred CcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHH
Confidence 455555555555555543 33444455555555 5556666666554432 244455555555555 56677
Q ss_pred HHHHHHHHhhhCCCCCChhhHHHHHHHHhc----cCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHc----CCChHHH
Q 046257 263 EAFETFNNMGLAGAELTRSTFVSVIKLCAT----TKELRLARQLHSQVLKNGIDFDHNIRTGLMVAYSK----CGKMEDA 334 (838)
Q Consensus 263 ~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~----~g~~~~A 334 (838)
+|++.|++..+.| +...+..+-..+.. .++.+.|.+.+....+.| +...+..|..+|.. .++.++|
T Consensus 133 ~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A 206 (490)
T 2xm6_A 133 ESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAIS 206 (490)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHH
Confidence 7777777666554 33444445555544 567777777777777664 46666777777776 7788888
Q ss_pred HHHHHhcccCCCeeehHHHHHHHHH----cCChHHHHHHHHHhhhcCCCCCcccHHHHHhhCCCCChhHHHHHHHHhhcc
Q 046257 335 SKIFSMMREMKDVVSWTAMISGHLQ----NGAIDLAVNFFCQMTREGVRPNGFTYSIILTAQPAVSPFQVHAHIIKTNYE 410 (838)
Q Consensus 335 ~~~f~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~ 410 (838)
.+.|++..+..+...+..+...|.. .+++++|..+|++..+.|.. ..
T Consensus 207 ~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~---~a-------------------------- 257 (490)
T 2xm6_A 207 AQWYRKSATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNS---IA-------------------------- 257 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCH---HH--------------------------
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCH---HH--------------------------
Confidence 8888877655666677777777776 77888888888887765321 11
Q ss_pred CCcchhhHHHHHHHH----cCCHHHHHHHHHhcCC-CCcchHHHHHHHHHhc-----CCchHHHHHHHHhhcCCCCCCHh
Q 046257 411 KSFSVGTALLNAYVK----KGILDEAAKVFELIDE-KDIVAWSAMLAGYAQI-----GDTEGAVKIYRQLTSEGVKPNEF 480 (838)
Q Consensus 411 ~~~~~~~~Li~~y~~----~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~ 480 (838)
...|..+|.. .++.++|.+.|+...+ .+...+..+...|... +++++|+..|++..+.|. ..
T Consensus 258 -----~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~---~~ 329 (490)
T 2xm6_A 258 -----QFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGD---AT 329 (490)
T ss_dssp -----HHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTC---HH
T ss_pred -----HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCC---HH
Confidence 1235555666 7888888888887654 3556777777888776 788889988888876542 11
Q ss_pred hHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcC---CHHHHHHHHHhcC-CCCHHHHHHHHHHH
Q 046257 481 TFSSVINACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKG---NIESASEVFKRQR-KRDLVSWNSMICGY 556 (838)
Q Consensus 481 t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g---~~~~A~~~f~~~~-~~~~~~~~~li~~~ 556 (838)
.+. .|..+|.+.| +.++|.+.|++.. ..+...|..|...|
T Consensus 330 a~~------------------------------------~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y 373 (490)
T 2xm6_A 330 AQA------------------------------------NLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNAL 373 (490)
T ss_dssp HHH------------------------------------HHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHH------------------------------------HHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 221 1222233323 4555555555443 23455555555555
Q ss_pred HH----cCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHhc----cCCHHHHHHHHHHHH
Q 046257 557 AQ----HGHTKKALEVFKEMRRQDLEFDGITFIGVITACTH----AGLVDEGQQYFDIMV 608 (838)
Q Consensus 557 ~~----~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~----~g~~~~a~~~~~~m~ 608 (838)
.. .++.++|++.|++..+.| +...+..+...+.+ .++.++|..+|+...
T Consensus 374 ~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 430 (490)
T 2xm6_A 374 LQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTAS 430 (490)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred HcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 55 556666666666665543 33444445555544 556666666666555
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.58 E-value=3.4e-12 Score=145.13 Aligned_cols=302 Identities=11% Similarity=0.091 Sum_probs=163.9
Q ss_pred CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 046257 143 NVVSWTSLLSGYARNKMNDRVLELFHRMQVEGIKPNSFTFSTVLGVLADEGIVATAVQVHTMVIKNGGEVVTSVCNALIS 222 (838)
Q Consensus 143 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~l~~~~~~~g~~~~~~~~~~li~ 222 (838)
|..+|..++. +.+.|++++|..+|+++.+.. +-+...|...+..+.+.|+.+.|+.+|+.+++.. |+...|..++.
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~ 87 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLS 87 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHH
Confidence 5567888887 467888888888888887642 2345567777777778888888888888887764 46666666664
Q ss_pred H-hHcCCChhHHHH----HHhcCC------CCCcchHHHHHHHHHh---------CCChHHHHHHHHHhhhCCCCCCh--
Q 046257 223 M-YLKSKMVRDARA----VFDGME------DRDSITWNSMVAGYVT---------NELHMEAFETFNNMGLAGAELTR-- 280 (838)
Q Consensus 223 ~-y~~~g~~~~A~~----~f~~m~------~~~~~~~n~li~~~~~---------~g~~~~A~~l~~~m~~~g~~p~~-- 280 (838)
. ....|+.+.|++ +|+... ..+...|...+....+ .|++++|..+|++.... |+.
T Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~---P~~~~ 164 (530)
T 2ooe_A 88 YVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN---PMINI 164 (530)
T ss_dssp HHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS---CCTTH
T ss_pred HHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc---hhhhH
Confidence 2 234566666554 554321 1244566666655443 45666677777666652 221
Q ss_pred -hhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHHhc-------cc-----CCC-
Q 046257 281 -STFVSVIKLCATTKELRLARQLHSQVLKNGIDFDHNIRTGLMVAYSKCGKMEDASKIFSMM-------RE-----MKD- 346 (838)
Q Consensus 281 -~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~-------~~-----~~~- 346 (838)
..|..........+. ..+ ..++. .+.++++.|..++... .. .|+
T Consensus 165 ~~~~~~~~~~e~~~~~-~~~-------------------~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~ 222 (530)
T 2ooe_A 165 EQLWRDYNKYEEGINI-HLA-------------------KKMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQN 222 (530)
T ss_dssp HHHHHHHHHHHHHHCH-HHH-------------------HHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC-
T ss_pred HHHHHHHHHHHHhhch-hHH-------------------HHHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCC
Confidence 111111110000000 000 01110 1223455555554431 10 111
Q ss_pred -------eeehHHHHHHHHHc----CCh----HHHHHHHHHhhhcCCCCCcccHHHHHhhCCCCChhHHHHHHHHhhccC
Q 046257 347 -------VVSWTAMISGHLQN----GAI----DLAVNFFCQMTREGVRPNGFTYSIILTAQPAVSPFQVHAHIIKTNYEK 411 (838)
Q Consensus 347 -------~~~~~~li~~~~~~----g~~----~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~ 411 (838)
...|...+.....+ ++. +.+..+|++.... .| .
T Consensus 223 ~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~--~p------------------------------~ 270 (530)
T 2ooe_A 223 TPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV--LG------------------------------H 270 (530)
T ss_dssp -CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH--HT------------------------------T
T ss_pred ChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh--CC------------------------------C
Confidence 12344433222221 111 2455555555442 12 2
Q ss_pred CcchhhHHHHHHHH-------cCCHH-------HHHHHHHhcCC---C-CcchHHHHHHHHHhcCCchHHHHHHHHhhcC
Q 046257 412 SFSVGTALLNAYVK-------KGILD-------EAAKVFELIDE---K-DIVAWSAMLAGYAQIGDTEGAVKIYRQLTSE 473 (838)
Q Consensus 412 ~~~~~~~Li~~y~~-------~g~~~-------~A~~~f~~~~~---~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 473 (838)
+..+|..+...+.+ .|+++ +|..+|++..+ | +...|..++..+.+.|++++|.++|+++.+
T Consensus 271 ~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~- 349 (530)
T 2ooe_A 271 HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA- 349 (530)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC-
Confidence 23344455555554 68876 88999987764 2 466888899999999999999999998887
Q ss_pred CCCCCH--hhHHHHHHHhcCChhhHHHHHHHHHHHHH
Q 046257 474 GVKPNE--FTFSSVINACTAPSAAVEQGKQFHACSIK 508 (838)
Q Consensus 474 g~~p~~--~t~~~ll~a~~~~~~~~~~~~~~~~~~~~ 508 (838)
+.|+. ..|.......... +.++.++.++...++
T Consensus 350 -~~p~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~Al~ 384 (530)
T 2ooe_A 350 -IEDIDPTLVYIQYMKFARRA-EGIKSGRMIFKKARE 384 (530)
T ss_dssp -SSSSCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHT
T ss_pred -ccccCchHHHHHHHHHHHHh-cCHHHHHHHHHHHHh
Confidence 34542 2343333333223 444444444444443
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.56 E-value=6.8e-14 Score=150.87 Aligned_cols=255 Identities=11% Similarity=0.022 Sum_probs=204.7
Q ss_pred hhhHHHHHHHHcCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcC
Q 046257 415 VGTALLNAYVKKGILDEAAKVFELIDE---KDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTA 491 (838)
Q Consensus 415 ~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 491 (838)
.+..+...|.+.|++++|...|+.+.+ .+...|..+...|.+.|++++|++.|+++.+.. +.+..++..+...+..
T Consensus 67 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 145 (365)
T 4eqf_A 67 GAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYTN 145 (365)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHc
Confidence 345678889999999999999998764 467789999999999999999999999998742 2346777777788888
Q ss_pred ChhhHHHHHHHHHHHHHhcCCC---------chhHHHHHHHHHHhcCCHHHHHHHHHhcC---CC--CHHHHHHHHHHHH
Q 046257 492 PSAAVEQGKQFHACSIKAKLNN---------ALCVSSALVTMYSKKGNIESASEVFKRQR---KR--DLVSWNSMICGYA 557 (838)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~--~~~~~~~li~~~~ 557 (838)
. +.++.+...+..+++..... ...++..+...|.+.|++++|.+.|+++. +. +..+|..+...|.
T Consensus 146 ~-g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~ 224 (365)
T 4eqf_A 146 T-SHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFH 224 (365)
T ss_dssp T-TCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHH
T ss_pred c-ccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHH
Confidence 8 99999999999988754221 12233446888999999999999999876 33 6889999999999
Q ss_pred HcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCC-CchHHHHHHHHHhcCCHHH
Q 046257 558 QHGHTKKALEVFKEMRRQDLEFD-GITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPT-MEHYSCMVDLYSRAGMLEK 635 (838)
Q Consensus 558 ~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~G~~~~ 635 (838)
..|++++|++.|+++.+. .|+ ..++..+..++...|++++|..+|+.+.+. .|+ ...+..+..+|.+.|++++
T Consensus 225 ~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 225 LSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEI---QPGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHCCCHHH
Confidence 999999999999999984 554 678999999999999999999999999854 454 6678899999999999999
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHHhccCCC------------CchhHHHHHHHHHhcCCchHHHHHHHH
Q 046257 636 AMDIINRMPFAASATVWRTVLAACRLISLQPH------------DSAIYVLLSNMYAATGHWQERARVRKL 694 (838)
Q Consensus 636 A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~------------~~~~y~~l~~~y~~~g~~~~a~~~~~~ 694 (838)
|.+.++++ +++.|+ +...+..|+.+|...|+.+.+.++.+.
T Consensus 300 A~~~~~~a------------------l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 300 AVSNFLTA------------------LSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHH------------------HHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHH------------------HHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999987 444443 477899999999999999998876553
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.53 E-value=1.2e-12 Score=138.17 Aligned_cols=257 Identities=12% Similarity=0.070 Sum_probs=206.3
Q ss_pred CeeehHHHHHHHHHcCChHHHHHHHHHhhhcCCCCCcccHHHHHhhCCCCChhHHHHHHHHhhccCCcchhhHHHHHHHH
Q 046257 346 DVVSWTAMISGHLQNGAIDLAVNFFCQMTREGVRPNGFTYSIILTAQPAVSPFQVHAHIIKTNYEKSFSVGTALLNAYVK 425 (838)
Q Consensus 346 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~y~~ 425 (838)
+...|..+...+...|++++|+.+|+++.+.. |+.. .++..+...|.+
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~------------------------------~~~~~l~~~~~~ 67 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA--PERE------------------------------EAWRSLGLTQAE 67 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCH------------------------------HHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCCH------------------------------HHHHHHHHHHHH
Confidence 44556777888889999999999999887742 3221 223457778899
Q ss_pred cCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHH--------------HH
Q 046257 426 KGILDEAAKVFELIDE---KDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVI--------------NA 488 (838)
Q Consensus 426 ~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll--------------~a 488 (838)
.|++++|.+.|+.+.+ .+...|..+...|...|++++|++.|+++... .|+.......+ ..
T Consensus 68 ~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (327)
T 3cv0_A 68 NEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLS--QPQYEQLGSVNLQADVDIDDLNVQSED 145 (327)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--STTTTTC--------------------
T ss_pred cCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHhHHHHHHHHHHHHHHh
Confidence 9999999999987754 35678889999999999999999999998874 34433332222 33
Q ss_pred --hcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChH
Q 046257 489 --CTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTK 563 (838)
Q Consensus 489 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~ 563 (838)
+... +..+.+...+..+.+.. +.+..++..+...|.+.|++++|.+.|+++. +.+..+|..+...|...|+++
T Consensus 146 ~~~~~~-~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 223 (327)
T 3cv0_A 146 FFFAAP-NEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQ 223 (327)
T ss_dssp CCTTSH-HHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHc-ccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHH
Confidence 4445 89999999999988765 3467888999999999999999999999775 456889999999999999999
Q ss_pred HHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCC-------------CchHHHHHHHHHh
Q 046257 564 KALEVFKEMRRQDLEFD-GITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPT-------------MEHYSCMVDLYSR 629 (838)
Q Consensus 564 ~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-------------~~~y~~lv~~l~r 629 (838)
+|++.|+++.+. .|+ ..++..+..++...|++++|.++|+.+.+. .|+ ...|..+..+|.+
T Consensus 224 ~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 298 (327)
T 3cv0_A 224 EALDAYNRALDI--NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYM---QVGGTTPTGEASREATRSMWDFFRMLLNV 298 (327)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HTTSCC-----CCTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCccccccccchhhcCHHHHHHHHHHHHh
Confidence 999999999984 454 678888999999999999999999998743 344 5678889999999
Q ss_pred cCCHHHHHHHHhhC
Q 046257 630 AGMLEKAMDIINRM 643 (838)
Q Consensus 630 ~G~~~~A~~~~~~m 643 (838)
.|+.++|.+++++.
T Consensus 299 ~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 299 MNRPDLVELTYAQN 312 (327)
T ss_dssp TTCHHHHHHHTTCC
T ss_pred cCCHHHHHHHHHHH
Confidence 99999999999876
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.53 E-value=3.4e-13 Score=142.54 Aligned_cols=255 Identities=11% Similarity=0.023 Sum_probs=208.8
Q ss_pred hhhHHHHHHHHcCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcC
Q 046257 415 VGTALLNAYVKKGILDEAAKVFELIDE---KDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTA 491 (838)
Q Consensus 415 ~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 491 (838)
.+..+...+...|++++|...|+++.+ .+...|..+...|.+.|++++|++.|+++.+.. +.+..++..+...+..
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 101 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHH
Confidence 334677888999999999999998753 366788999999999999999999999998752 2355667777777777
Q ss_pred ChhhHHHHHHHHHHHHHhcCCCchhHHHHH--------------HH-HHHhcCCHHHHHHHHHhcC---CCCHHHHHHHH
Q 046257 492 PSAAVEQGKQFHACSIKAKLNNALCVSSAL--------------VT-MYSKKGNIESASEVFKRQR---KRDLVSWNSMI 553 (838)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--------------i~-~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li 553 (838)
. +..+.+...+..+.+.... +...+..+ .. .|...|++++|.+.++++. +.+...|..+.
T Consensus 102 ~-~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la 179 (327)
T 3cv0_A 102 E-HNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLG 179 (327)
T ss_dssp T-TCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred c-CCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 7 9999999999998876433 22333333 22 3788899999999998875 45788999999
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccC-CCchHHHHHHHHHhcC
Q 046257 554 CGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYP-TMEHYSCMVDLYSRAG 631 (838)
Q Consensus 554 ~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~G 631 (838)
..|...|++++|++.|+++.+. .|+ ..++..+...+...|++++|..+|+.+.+. .| +...+..+..+|.+.|
T Consensus 180 ~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~l~~~~~~~g 254 (327)
T 3cv0_A 180 VLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDI---NPGYVRVMYNMAVSYSNMS 254 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999984 454 678889999999999999999999998754 34 4567888999999999
Q ss_pred CHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCC------------CchhHHHHHHHHHhcCCchHHHHHHHHH
Q 046257 632 MLEKAMDIINRMPFAASATVWRTVLAACRLISLQPH------------DSAIYVLLSNMYAATGHWQERARVRKLM 695 (838)
Q Consensus 632 ~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~------------~~~~y~~l~~~y~~~g~~~~a~~~~~~m 695 (838)
++++|.+.++++ +++.|+ ++..+..++.+|...|++++|..+++..
T Consensus 255 ~~~~A~~~~~~a------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 255 QYDLAAKQLVRA------------------IYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp CHHHHHHHHHHH------------------HHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred cHHHHHHHHHHH------------------HHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 999999999987 566777 6889999999999999999999887643
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=9.2e-12 Score=139.25 Aligned_cols=202 Identities=15% Similarity=0.060 Sum_probs=111.4
Q ss_pred cCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHH-HhcC----------
Q 046257 426 KGILDEAAKVFELIDE---KDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVIN-ACTA---------- 491 (838)
Q Consensus 426 ~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~-a~~~---------- 491 (838)
.|++++|.+.+++... .+...|..+...|.+.|++++|++.|++..+. .|+......-+. .+..
T Consensus 226 ~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~y~~~~~~~~~~~~ 303 (472)
T 4g1t_A 226 GEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAYLHCQIGCCYRAKVFQVMNLRE 303 (472)
T ss_dssp ----CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHC--
T ss_pred hhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHhhhHHH
Confidence 4455566666654432 24445666666666666666666666666542 344322211111 1100
Q ss_pred --------ChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCHH----HHHHHHH-HH
Q 046257 492 --------PSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQR--KRDLV----SWNSMIC-GY 556 (838)
Q Consensus 492 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~--~~~~~----~~~~li~-~~ 556 (838)
.....+.+...+..+.... +.+...+..+...|.+.|++++|.+.|++.. .++.. .+..+.. .+
T Consensus 304 ~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~ 382 (472)
T 4g1t_A 304 NGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQL 382 (472)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence 0023445555555555543 3345667778888999999999999998764 33322 2233332 23
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHhcCCHHHH
Q 046257 557 AQHGHTKKALEVFKEMRRQDLEFDGITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKA 636 (838)
Q Consensus 557 ~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A 636 (838)
.+.|+.++|++.|++.++ +.|+.......+ +.+.++++...+.. +.+...|..+..+|...|++++|
T Consensus 383 ~~~~~~~~Ai~~y~kal~--i~~~~~~~~~~~---------~~l~~~~~~~l~~~--p~~~~~~~~LG~~~~~~g~~~~A 449 (472)
T 4g1t_A 383 YQMKCEDKAIHHFIEGVK--INQKSREKEKMK---------DKLQKIAKMRLSKN--GADSEALHVLAFLQELNEKMQQA 449 (472)
T ss_dssp HTSSCHHHHHHHHHHHHH--SCCCCHHHHHHH---------HHHHHHHHHHHHHC--C-CTTHHHHHHHHHHHHHHCC--
T ss_pred HHCCCHHHHHHHHHHHHh--cCcccHHHHHHH---------HHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHH
Confidence 467889999999999888 677754333222 33445555554332 23567899999999999999999
Q ss_pred HHHHhhC
Q 046257 637 MDIINRM 643 (838)
Q Consensus 637 ~~~~~~m 643 (838)
.+.+++.
T Consensus 450 ~~~y~kA 456 (472)
T 4g1t_A 450 DEDSERG 456 (472)
T ss_dssp -------
T ss_pred HHHHHHH
Confidence 9999987
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.6e-12 Score=128.60 Aligned_cols=194 Identities=19% Similarity=0.181 Sum_probs=149.0
Q ss_pred CcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHH
Q 046257 443 DIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALV 522 (838)
Q Consensus 443 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 522 (838)
+...|..+...+.+.|++++|+..|++..+. .|+. ...+..+.
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~-----------------------------------~~a~~~lg 46 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKE--NPQD-----------------------------------PEALYWLA 46 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SSSC-----------------------------------HHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCC-----------------------------------HHHHHHHH
Confidence 4556777788888888888888888887753 3433 23334455
Q ss_pred HHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHc-----------CChHHHHHHHHHHHHcCCCCC-hhHHHHH
Q 046257 523 TMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQH-----------GHTKKALEVFKEMRRQDLEFD-GITFIGV 587 (838)
Q Consensus 523 ~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~-----------g~~~~A~~l~~~m~~~g~~pd-~~t~~~l 587 (838)
..|.+.|++++|...|++.. +.+...|..+...|... |++++|++.|++..+ +.|+ ...+..+
T Consensus 47 ~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~--~~P~~~~~~~~l 124 (217)
T 2pl2_A 47 RTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAER--VNPRYAPLHLQR 124 (217)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHH--hCcccHHHHHHH
Confidence 56778899999999888765 45678889999999999 999999999999999 5676 5678888
Q ss_pred HHHHhccCCHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCC
Q 046257 588 ITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPH 667 (838)
Q Consensus 588 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~ 667 (838)
..++...|++++|...|+...+.. .+...+..+..+|...|++++|.+.+++. ++++|+
T Consensus 125 g~~~~~~g~~~~A~~~~~~al~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~a------------------l~~~P~ 183 (217)
T 2pl2_A 125 GLVYALLGERDKAEASLKQALALE---DTPEIRSALAELYLSMGRLDEALAQYAKA------------------LEQAPK 183 (217)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTCHHHHHHHHHHH------------------HHHSTT
T ss_pred HHHHHHcCChHHHHHHHHHHHhcc---cchHHHHHHHHHHHHcCCHHHHHHHHHHH------------------HHhCCC
Confidence 889999999999999999998543 66778889999999999999999999987 788999
Q ss_pred CchhHHHHHHHHHhcCCchHHHHHHHHHh
Q 046257 668 DSAIYVLLSNMYAATGHWQERARVRKLMN 696 (838)
Q Consensus 668 ~~~~y~~l~~~y~~~g~~~~a~~~~~~m~ 696 (838)
++..+..++.+|...|++++|...+++..
T Consensus 184 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 184 DLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp CHHHHHHHHHHHTC---------------
T ss_pred ChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 99999999999999999999998887653
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.43 E-value=4.8e-12 Score=128.47 Aligned_cols=222 Identities=14% Similarity=0.091 Sum_probs=169.2
Q ss_pred hhhHHHHHHHHcCCHHHHHHHHHhcCC--CCcchHHHHHHHHHhcCCchHHHHHHHHhhcCC--CCCCHhhHHHHHHHhc
Q 046257 415 VGTALLNAYVKKGILDEAAKVFELIDE--KDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEG--VKPNEFTFSSVINACT 490 (838)
Q Consensus 415 ~~~~Li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--~~p~~~t~~~ll~a~~ 490 (838)
.+..+...|...|++++|...|+...+ .+...|..+...|...|++++|++.|++..+.. ..|+..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~---------- 76 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYK---------- 76 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH----------
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchH----------
Confidence 445566667777777777777765432 455566777777777777777777776655421 000100
Q ss_pred CChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCChHHHHHH
Q 046257 491 APSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQR--KRDLVSWNSMICGYAQHGHTKKALEV 568 (838)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l 568 (838)
....++..+...|.+.|++++|.+.|++.. .++. ..+...|++++|++.
T Consensus 77 ----------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~~~~~~a~~~ 127 (258)
T 3uq3_A 77 ----------------------VISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTA-------DILTKLRNAEKELKK 127 (258)
T ss_dssp ----------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHHHHH
T ss_pred ----------------------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchh-------HHHHHHhHHHHHHHH
Confidence 013556667788999999999999998876 4442 456677889999999
Q ss_pred HHHHHHcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHhcCCHHHHHHHHhhCCCCC
Q 046257 569 FKEMRRQDLEFD-GITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDIINRMPFAA 647 (838)
Q Consensus 569 ~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~ 647 (838)
++++.. ..|+ ...+..+...+...|++++|..+|+.+.+.. +.+...|..+...|.+.|++++|.+.++++
T Consensus 128 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a---- 199 (258)
T 3uq3_A 128 AEAEAY--VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKA---- 199 (258)
T ss_dssp HHHHHH--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH----
T ss_pred HHHHHH--cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHH----
Confidence 999998 5565 4567888889999999999999999988543 224567888999999999999999999987
Q ss_pred CHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhh
Q 046257 648 SATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMND 697 (838)
Q Consensus 648 ~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~ 697 (838)
++++|+++..|..++.+|...|++++|...+++..+
T Consensus 200 --------------l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 200 --------------IEKDPNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp --------------HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --------------HHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 788999999999999999999999999999998865
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.43 E-value=8.3e-12 Score=128.08 Aligned_cols=246 Identities=14% Similarity=0.088 Sum_probs=192.8
Q ss_pred hHHHHHHHHcCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCH--hhHHHHHHHhcC
Q 046257 417 TALLNAYVKKGILDEAAKVFELIDE---KDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNE--FTFSSVINACTA 491 (838)
Q Consensus 417 ~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~ 491 (838)
......+.+.|++++|...|+...+ .+...|..+...|.+.|++++|++.|++....+-.|+. ..+..+-..+..
T Consensus 7 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~ 86 (272)
T 3u4t_A 7 FRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMK 86 (272)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHH
Confidence 3566778899999999999998754 35568999999999999999999999999884322222 236666666777
Q ss_pred ChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHH
Q 046257 492 PSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEV 568 (838)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l 568 (838)
. +..+.+...+..+.+.. +.+..++..+...|.+.|++++|.+.|++.. +.+...|..+...+...+++++|++.
T Consensus 87 ~-~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 164 (272)
T 3u4t_A 87 K-GQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSS 164 (272)
T ss_dssp T-TCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred c-ccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7 99999999999998865 3456788999999999999999999999887 34677888888344445699999999
Q ss_pred HHHHHHcCCCCC-hhHHHHHHHHHhccCC---HHHHHHHHHHHHhcCCccCCC------chHHHHHHHHHhcCCHHHHHH
Q 046257 569 FKEMRRQDLEFD-GITFIGVITACTHAGL---VDEGQQYFDIMVNEHHIYPTM------EHYSCMVDLYSRAGMLEKAMD 638 (838)
Q Consensus 569 ~~~m~~~g~~pd-~~t~~~ll~a~~~~g~---~~~a~~~~~~m~~~~~~~p~~------~~y~~lv~~l~r~G~~~~A~~ 638 (838)
|+++.+ ..|+ ...+..+..++...|. .++|...++...+...-.|+. ..|..+...|.+.|++++|.+
T Consensus 165 ~~~a~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 242 (272)
T 3u4t_A 165 FVKVLE--LKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADA 242 (272)
T ss_dssp HHHHHH--HSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHH--hCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999 5666 4667777788888888 888999998887554333543 467888999999999999999
Q ss_pred HHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCC
Q 046257 639 IINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGH 684 (838)
Q Consensus 639 ~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~ 684 (838)
.++++ ++++|+|+.+...+..+....+.
T Consensus 243 ~~~~a------------------l~~~p~~~~a~~~l~~~~~~~~~ 270 (272)
T 3u4t_A 243 AWKNI------------------LALDPTNKKAIDGLKMKLEHHHH 270 (272)
T ss_dssp HHHHH------------------HHHCTTCHHHHHHHC--------
T ss_pred HHHHH------------------HhcCccHHHHHHHhhhhhccccc
Confidence 99987 78999999888888777665544
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.7e-11 Score=124.28 Aligned_cols=212 Identities=12% Similarity=0.086 Sum_probs=150.1
Q ss_pred ehHHHHHHHHHcCChHHHHHHHHHhhhcCCCCCcccHHHHHhhCCCCChhHHHHHHHHhhccCCcchhhHHHHHHHHcCC
Q 046257 349 SWTAMISGHLQNGAIDLAVNFFCQMTREGVRPNGFTYSIILTAQPAVSPFQVHAHIIKTNYEKSFSVGTALLNAYVKKGI 428 (838)
Q Consensus 349 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~y~~~g~ 428 (838)
.|..+...+...|++++|+..|++..+.. .+...+ ..+...|...|+
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~-------------------------------~~~~~~~~~~~~ 53 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYL-------------------------------NNRAAAEYEKGE 53 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHH-------------------------------HHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHH-------------------------------HHHHHHHHHccc
Confidence 34555566666677777777776666543 222222 345666777777
Q ss_pred HHHHHHHHHhcCCC---C-------cchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCChhhHHH
Q 046257 429 LDEAAKVFELIDEK---D-------IVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQ 498 (838)
Q Consensus 429 ~~~A~~~f~~~~~~---~-------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 498 (838)
+++|.+.|+...+. + ...|..+...|.+.|++++|++.|++.... .|+.
T Consensus 54 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~------------------- 112 (258)
T 3uq3_A 54 YETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA------------------- 112 (258)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------------------
T ss_pred HHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------------------
Confidence 77777777665431 1 467888899999999999999999988763 3332
Q ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 046257 499 GKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQ 575 (838)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 575 (838)
+.+.+.|++++|.+.++++. +.+...|..+...|...|++++|++.|++..+.
T Consensus 113 ------------------------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 168 (258)
T 3uq3_A 113 ------------------------DILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR 168 (258)
T ss_dssp ------------------------HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ------------------------HHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 12445566677777776654 224566778888888888888888888888874
Q ss_pred CCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccC-CCchHHHHHHHHHhcCCHHHHHHHHhhC
Q 046257 576 DLEF-DGITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYP-TMEHYSCMVDLYSRAGMLEKAMDIINRM 643 (838)
Q Consensus 576 g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~G~~~~A~~~~~~m 643 (838)
.| +..++..+..++...|++++|..+|+...+. .| +...|..+...|.+.|++++|.+.+++.
T Consensus 169 --~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (258)
T 3uq3_A 169 --APEDARGYSNRAAALAKLMSFPEAIADCNKAIEK---DPNFVRAYIRKATAQIAVKEYASALETLDAA 233 (258)
T ss_dssp --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred --CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh---CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 34 4567778888888888888888888888743 34 3566778888888999999999888876
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.35 E-value=5.9e-11 Score=120.15 Aligned_cols=198 Identities=14% Similarity=0.085 Sum_probs=160.3
Q ss_pred cchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHH
Q 046257 444 IVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVT 523 (838)
Q Consensus 444 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~ 523 (838)
...|..+...|...|++++|++.|+++.+. .|+ +...+..+..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~-----------------------------------~~~~~~~la~ 79 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEI--DPS-----------------------------------SADAHAALAV 79 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHH--CTT-----------------------------------CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCC-----------------------------------hHHHHHHHHH
Confidence 456788888999999999999999988763 222 2234445666
Q ss_pred HHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccCCHHH
Q 046257 524 MYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITACTHAGLVDE 599 (838)
Q Consensus 524 ~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~ 599 (838)
.|.+.|++++|.+.|+++. +.+...|..+...|...|++++|++.|+++.+.+..|+ ...+..+..++...|++++
T Consensus 80 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 159 (252)
T 2ho1_A 80 VFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQ 159 (252)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHH
Confidence 7888899999999988765 44778888899999999999999999999887445565 4567778888899999999
Q ss_pred HHHHHHHHHhcCCccCCCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHH
Q 046257 600 GQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMY 679 (838)
Q Consensus 600 a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y 679 (838)
|.++|+.+.+.. +.+...+..++.+|.+.|++++|.+.++++ ++..|++...+..++.+|
T Consensus 160 A~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~------------------~~~~~~~~~~~~~~~~~~ 219 (252)
T 2ho1_A 160 AKEYFEKSLRLN--RNQPSVALEMADLLYKEREYVPARQYYDLF------------------AQGGGQNARSLLLGIRLA 219 (252)
T ss_dssp HHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHH------------------HTTSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHH------------------HHhCcCcHHHHHHHHHHH
Confidence 999999887442 124567888889999999999999999887 677888889999999999
Q ss_pred HhcCCchHHHHHHHHHhhC
Q 046257 680 AATGHWQERARVRKLMNDR 698 (838)
Q Consensus 680 ~~~g~~~~a~~~~~~m~~~ 698 (838)
...|++++|.+.++.+.+.
T Consensus 220 ~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 220 KVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHH
Confidence 9999999999999988764
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.32 E-value=8.1e-10 Score=122.27 Aligned_cols=219 Identities=12% Similarity=0.152 Sum_probs=146.5
Q ss_pred hhHHHHHHHHcC----CHHHHHHHHHhcCCCCcchHHHHHHHHHhcC---CchHHHHHHHHhhcCCCCCCHhhHHHHHHH
Q 046257 416 GTALLNAYVKKG----ILDEAAKVFELIDEKDIVAWSAMLAGYAQIG---DTEGAVKIYRQLTSEGVKPNEFTFSSVINA 488 (838)
Q Consensus 416 ~~~Li~~y~~~g----~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 488 (838)
...|...|...+ ..+++..++......+...+..|...|.+.| +.++|++.|++..+.|. ++..
T Consensus 144 ~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~-------- 214 (452)
T 3e4b_A 144 GLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQ-------- 214 (452)
T ss_dssp HHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHH--------
T ss_pred HHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHH--------
Confidence 344555666655 3444555555555556667777777777777 67777777777666542 2222
Q ss_pred hcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhc----CCHHHHHHHHHhcCCCCHHHHHHHHHH-H--HHcCC
Q 046257 489 CTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKK----GNIESASEVFKRQRKRDLVSWNSMICG-Y--AQHGH 561 (838)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~----g~~~~A~~~f~~~~~~~~~~~~~li~~-~--~~~g~ 561 (838)
.+..|..+|... +++++|.+.|++..+.+...+..|... | ...|+
T Consensus 215 ----------------------------~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d 266 (452)
T 3e4b_A 215 ----------------------------RVDSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGD 266 (452)
T ss_dssp ----------------------------HHHHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCC
T ss_pred ----------------------------HHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC
Confidence 112233334332 688888888887764466777777776 4 45788
Q ss_pred hHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccC-----CHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHh----cCC
Q 046257 562 TKKALEVFKEMRRQDLEFDGITFIGVITACTHAG-----LVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSR----AGM 632 (838)
Q Consensus 562 ~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g-----~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r----~G~ 632 (838)
.++|++.|++..+.| +......|...|. .| +.++|.++|+... .-++..+..|..+|.. ..+
T Consensus 267 ~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d 337 (452)
T 3e4b_A 267 VEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVY 337 (452)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCC
T ss_pred HHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcC
Confidence 999999999988876 5556666666665 45 8899999988664 2345566667777766 338
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHh----cCCchHHHHHHHHHhhCCC
Q 046257 633 LEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAA----TGHWQERARVRKLMNDRKV 700 (838)
Q Consensus 633 ~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~----~g~~~~a~~~~~~m~~~g~ 700 (838)
+++|.+.+++. .++.++.++..|+.+|.. ..+.++|..++++..+.|.
T Consensus 338 ~~~A~~~~~~A--------------------a~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 338 PQKALDHLLTA--------------------ARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp HHHHHHHHHHH--------------------HTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHH--------------------HhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC
Confidence 88999998865 235577788888888874 4578888888888877664
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.3e-10 Score=114.94 Aligned_cols=197 Identities=12% Similarity=0.019 Sum_probs=155.1
Q ss_pred CcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHH
Q 046257 443 DIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALV 522 (838)
Q Consensus 443 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 522 (838)
+...|..+...|...|++++|++.|+++.+. .|+ +...+..+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~-----------------------------------~~~~~~~l~ 49 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKS--DPK-----------------------------------NELAWLVRA 49 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT-----------------------------------CHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--Ccc-----------------------------------chHHHHHHH
Confidence 3456777888888888899998888887653 222 122344556
Q ss_pred HHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHc-CChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccCCH
Q 046257 523 TMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQH-GHTKKALEVFKEMRRQDLEFD-GITFIGVITACTHAGLV 597 (838)
Q Consensus 523 ~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~ 597 (838)
..|...|++++|.+.|++.. +.+..+|..+...|... |++++|++.|+++.+.+..|+ ...+..+..++...|++
T Consensus 50 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 129 (225)
T 2vq2_A 50 EIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQF 129 (225)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCH
Confidence 66788888889888888765 45677888888999999 999999999999888434454 45677888888899999
Q ss_pred HHHHHHHHHHHhcCCccC-CCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCC-CCchhHHHH
Q 046257 598 DEGQQYFDIMVNEHHIYP-TMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQP-HDSAIYVLL 675 (838)
Q Consensus 598 ~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P-~~~~~y~~l 675 (838)
++|..+|+.+.+. .| +...+..++.++.+.|++++|.+.++++ ++..| +++..+..+
T Consensus 130 ~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~------------------~~~~~~~~~~~~~~~ 188 (225)
T 2vq2_A 130 GLAEAYLKRSLAA---QPQFPPAFKELARTKMLAGQLGDADYYFKKY------------------QSRVEVLQADDLLLG 188 (225)
T ss_dssp HHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHTCHHHHHHHHHHH------------------HHHHCSCCHHHHHHH
T ss_pred HHHHHHHHHHHHh---CCCCchHHHHHHHHHHHcCCHHHHHHHHHHH------------------HHhCCCCCHHHHHHH
Confidence 9999999888743 34 3567788888999999999999999876 67778 888888888
Q ss_pred HHHHHhcCCchHHHHHHHHHhh
Q 046257 676 SNMYAATGHWQERARVRKLMND 697 (838)
Q Consensus 676 ~~~y~~~g~~~~a~~~~~~m~~ 697 (838)
+.+|...|+.++|..+++.+.+
T Consensus 189 ~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 189 WKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHHHHH
Confidence 9999999999999998888865
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.30 E-value=5e-11 Score=122.32 Aligned_cols=239 Identities=9% Similarity=-0.072 Sum_probs=180.5
Q ss_pred HcCCHHHHHHHHHhcCCC-------CcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCChhhHH
Q 046257 425 KKGILDEAAKVFELIDEK-------DIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVE 497 (838)
Q Consensus 425 ~~g~~~~A~~~f~~~~~~-------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~ 497 (838)
..|++++|...|+.+.+. +...|..+...|...|++++|++.|+++.+.. +.+..++..+...+... +.++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~-~~~~ 94 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQA-GNFD 94 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHT-TCHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHc-cCHH
Confidence 457788888888877652 34578888888889999999999998887742 22456666676777777 8888
Q ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 046257 498 QGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQR--KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQ 575 (838)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 575 (838)
.+...+..+++.. +.+...+..+...|.+.|++++|.+.|+++. .|+...+...+..+...|++++|+..|++....
T Consensus 95 ~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 95 AAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 8888888888764 3357788889999999999999999999876 444444444555557779999999999988885
Q ss_pred CCCCChhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCC-----CchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHH
Q 046257 576 DLEFDGITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPT-----MEHYSCMVDLYSRAGMLEKAMDIINRMPFAASAT 650 (838)
Q Consensus 576 g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~ 650 (838)
. .++...+ .++..+...+..++|...++...+ ..|+ ...+..+...|.+.|++++|.+.++++
T Consensus 174 ~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a------- 241 (275)
T 1xnf_A 174 S-DKEQWGW-NIVEFYLGNISEQTLMERLKADAT---DNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLA------- 241 (275)
T ss_dssp S-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCC---SHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-------
T ss_pred C-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhc---ccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHH-------
Confidence 2 3344444 477777888889999999988762 2332 467888999999999999999999987
Q ss_pred HHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHH
Q 046257 651 VWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVR 692 (838)
Q Consensus 651 ~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~ 692 (838)
++++|++...+ +.++...|++++|.+.+
T Consensus 242 -----------l~~~p~~~~~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 242 -----------VANNVHNFVEH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp -----------HTTCCTTCHHH---HHHHHHHHHHHHC----
T ss_pred -----------HhCCchhHHHH---HHHHHHHHHHHhhHHHH
Confidence 67788776554 56788889999887754
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.27 E-value=6.6e-11 Score=118.85 Aligned_cols=211 Identities=14% Similarity=0.140 Sum_probs=144.0
Q ss_pred chhhHHHHHHHHcCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhc
Q 046257 414 SVGTALLNAYVKKGILDEAAKVFELIDE---KDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACT 490 (838)
Q Consensus 414 ~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 490 (838)
..+..+...+...|++++|...|+++.+ .+...|..+...|.+.|++++|++.|+++..
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~------------------ 85 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALE------------------ 85 (243)
T ss_dssp ------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------
Confidence 3344455555666666666666665532 2344555556666666666666666655543
Q ss_pred CChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHH
Q 046257 491 APSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALE 567 (838)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~ 567 (838)
.. +.+...+..+...|.+.|++++|.+.|+++. +.+...|..+...|...|++++|++
T Consensus 86 ------------------~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~ 146 (243)
T 2q7f_A 86 ------------------LD-SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALP 146 (243)
T ss_dssp ------------------HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHH
T ss_pred ------------------cC-CcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHH
Confidence 21 2234556667778899999999999998765 5578889999999999999999999
Q ss_pred HHHHHHHcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHhcCCHHHHHHHHhhCCCC
Q 046257 568 VFKEMRRQDLEF-DGITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDIINRMPFA 646 (838)
Q Consensus 568 l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~ 646 (838)
.|+++.+. .| +...+..+...+...|++++|..+|+.+.+.. +.+...+..+..+|.+.|++++|.+.++++
T Consensus 147 ~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~--- 219 (243)
T 2q7f_A 147 YLQRAVEL--NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQD--PGHADAFYNAGVTYAYKENREKALEMLDKA--- 219 (243)
T ss_dssp HHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCTTHHHHHHHHH---
T ss_pred HHHHHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHccCHHHHHHHHHHH---
Confidence 99999984 44 46678888889999999999999999987542 234567888999999999999999999987
Q ss_pred CCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcC
Q 046257 647 ASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATG 683 (838)
Q Consensus 647 ~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g 683 (838)
++++|+++..+..++.+....|
T Consensus 220 ---------------~~~~p~~~~~~~~~~~l~~~~~ 241 (243)
T 2q7f_A 220 ---------------IDIQPDHMLALHAKKLLGHHHH 241 (243)
T ss_dssp ---------------HHHCTTCHHHHHHHTC------
T ss_pred ---------------HccCcchHHHHHHHHHHHhhcc
Confidence 7888988888887776655544
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.27 E-value=1.6e-10 Score=110.70 Aligned_cols=162 Identities=14% Similarity=0.157 Sum_probs=143.1
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHH
Q 046257 514 ALCVSSALVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVIT 589 (838)
Q Consensus 514 ~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~ 589 (838)
+..+|..|...|.+.|++++|.+.|++.. +.+..+|..+...|.+.|++++|++.+++.... .|+ ...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHHH
Confidence 56788889999999999999999999875 557889999999999999999999999999884 555 456777778
Q ss_pred HHhccCCHHHHHHHHHHHHhcCCccC-CCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCC
Q 046257 590 ACTHAGLVDEGQQYFDIMVNEHHIYP-TMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHD 668 (838)
Q Consensus 590 a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~ 668 (838)
.+...++++++...+....+. .| +...+..+..+|.+.|++++|++.+++. ++++|++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~---~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~------------------l~~~p~~ 140 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIAL---NTVYADAYYKLGLVYDSMGEHDKAIEAYEKT------------------ISIKPGF 140 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH------------------HHHCTTC
T ss_pred HHHHcCCHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHhCCchhHHHHHHHH------------------HHhcchh
Confidence 889999999999999998743 34 4567888999999999999999999987 7899999
Q ss_pred chhHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 046257 669 SAIYVLLSNMYAATGHWQERARVRKLMNDR 698 (838)
Q Consensus 669 ~~~y~~l~~~y~~~g~~~~a~~~~~~m~~~ 698 (838)
+.+|..++.+|...|++++|.+.+++..+.
T Consensus 141 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 141 IRAYQSIGLAYEGKGLRDEAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 999999999999999999999999988653
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.26 E-value=6.3e-10 Score=123.17 Aligned_cols=336 Identities=13% Similarity=0.063 Sum_probs=191.6
Q ss_pred cCCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCh---HHHHHHHccCCCCCcchHHHHHHHHHhCC-----Cch
Q 046257 90 CLFDHVFGRQVHCECVKSGFARDVNVSTSLVDLYMRTNNV---EDGRRVFDDMNESNVVSWTSLLSGYARNK-----MND 161 (838)
Q Consensus 90 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~---~~A~~~f~~m~~~~~~~~~~li~~~~~~g-----~~~ 161 (838)
+.|++++|.+++....+.| ++..+..|-.+|...|+. ++|...|+...+.++..+..|...+...| +++
T Consensus 15 ~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~~~~ 91 (452)
T 3e4b_A 15 KRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEAEHH 91 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--CCHHHHH
T ss_pred hCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCcCHH
Confidence 3445555555555544443 122233333444445555 66666666655555555666655444444 556
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCCh---HHHHHHHHHHHHhCCCCchhHHHHHHHHhHcCCC----hhHHH
Q 046257 162 RVLELFHRMQVEGIKPNSFTFSTVLGVLADEGIV---ATAVQVHTMVIKNGGEVVTSVCNALISMYLKSKM----VRDAR 234 (838)
Q Consensus 162 ~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~---~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~----~~~A~ 234 (838)
+|+..|++..+.|.. ..+..|...+...+.. ..+.+.+....+.| +......|...|...+. .+.|.
T Consensus 92 ~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a~ 165 (452)
T 3e4b_A 92 EAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDVE 165 (452)
T ss_dssp HHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHHH
T ss_pred HHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHHH
Confidence 777777777665532 2444455554433322 23444444444444 24455666677776663 44455
Q ss_pred HHHhcCCCCCcchHHHHHHHHHhCC---ChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhcc----CcHHHHHHHHHHHH
Q 046257 235 AVFDGMEDRDSITWNSMVAGYVTNE---LHMEAFETFNNMGLAGAELTRSTFVSVIKLCATT----KELRLARQLHSQVL 307 (838)
Q Consensus 235 ~~f~~m~~~~~~~~n~li~~~~~~g---~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~----~~~~~a~~~~~~~~ 307 (838)
.++......+...+..+...|...| +.++|++.|++..+.| .++...+..+-..+... ++.++|...++...
T Consensus 166 ~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa 244 (452)
T 3e4b_A 166 RICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA 244 (452)
T ss_dssp HHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc
Confidence 5666666667778888888888888 8888888888887776 33344334444555443 68888888888876
Q ss_pred HhCCCCChhHHHHHHHH-H--HcCCChHHHHHHHHhcccCCCeeehHHHHHHHHHcC-----ChHHHHHHHHHhhhcCCC
Q 046257 308 KNGIDFDHNIRTGLMVA-Y--SKCGKMEDASKIFSMMREMKDVVSWTAMISGHLQNG-----AIDLAVNFFCQMTREGVR 379 (838)
Q Consensus 308 ~~g~~~~~~~~~~Li~~-y--~~~g~~~~A~~~f~~~~~~~~~~~~~~li~~~~~~g-----~~~~A~~l~~~m~~~g~~ 379 (838)
+-+...+..|..+ | ...++.++|.+.|++..+..+...+..|...|. .| ++++|+..|++.. .|
T Consensus 245 ----~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g-- 316 (452)
T 3e4b_A 245 ----PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR-- 316 (452)
T ss_dssp ----GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT--
T ss_pred ----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC--
Confidence 3355666666666 4 467888888888888765566777777777776 55 7888888888776 22
Q ss_pred CCcccHHHHHhhCCCCChhHHHHHHHHhhccCCcchhhHHHHHHHH----cCCHHHHHHHHHhcCCC-CcchHHHHHHHH
Q 046257 380 PNGFTYSIILTAQPAVSPFQVHAHIIKTNYEKSFSVGTALLNAYVK----KGILDEAAKVFELIDEK-DIVAWSAMLAGY 454 (838)
Q Consensus 380 pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~y~~----~g~~~~A~~~f~~~~~~-~~~~~~~li~~~ 454 (838)
+... ...|..+|.. ..++++|.+.|....+. +......|...|
T Consensus 317 -~~~A-------------------------------~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y 364 (452)
T 3e4b_A 317 -EVAA-------------------------------DYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLF 364 (452)
T ss_dssp -CHHH-------------------------------HHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHH
T ss_pred -CHHH-------------------------------HHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHH
Confidence 1111 1234445544 33788888888766543 556666666666
Q ss_pred Hh----cCCchHHHHHHHHhhcCCC
Q 046257 455 AQ----IGDTEGAVKIYRQLTSEGV 475 (838)
Q Consensus 455 ~~----~g~~~~A~~l~~~m~~~g~ 475 (838)
.. ..+.++|..+|+...+.|.
T Consensus 365 ~~G~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 365 SQGKGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp HSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred HhCCCCCCCHHHHHHHHHHHHHCCC
Confidence 64 3477888888888877663
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.25 E-value=1.2e-09 Score=112.18 Aligned_cols=221 Identities=14% Similarity=0.035 Sum_probs=166.3
Q ss_pred chhhHHHHHHHHcCCHHHHHHHHHhcCCC-CcchHHHHHHHHHh----cCCchHHHHHHHHhhcCCCCCCHhhHHHHHHH
Q 046257 414 SVGTALLNAYVKKGILDEAAKVFELIDEK-DIVAWSAMLAGYAQ----IGDTEGAVKIYRQLTSEGVKPNEFTFSSVINA 488 (838)
Q Consensus 414 ~~~~~Li~~y~~~g~~~~A~~~f~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 488 (838)
..+..+...|...|++++|.+.|+...++ +...+..+...|.. .+++++|++.|++..+.+
T Consensus 7 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-------------- 72 (273)
T 1ouv_A 7 KELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN-------------- 72 (273)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--------------
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--------------
Confidence 34455666666667777777766655443 34456666666666 666666666666655432
Q ss_pred hcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHh----cCCHHHHHHHHHhcC-CCCHHHHHHHHHHHHH----c
Q 046257 489 CTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSK----KGNIESASEVFKRQR-KRDLVSWNSMICGYAQ----H 559 (838)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k----~g~~~~A~~~f~~~~-~~~~~~~~~li~~~~~----~ 559 (838)
+...+..+..+|.. .|++++|.+.|++.. ..+...+..+...|.. .
T Consensus 73 -------------------------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~ 127 (273)
T 1ouv_A 73 -------------------------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVT 127 (273)
T ss_dssp -------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSC
T ss_pred -------------------------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcc
Confidence 33344455666777 899999999998775 4477889999999999 9
Q ss_pred CChHHHHHHHHHHHHcCCCCChhHHHHHHHHHhc----cCCHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHh----cC
Q 046257 560 GHTKKALEVFKEMRRQDLEFDGITFIGVITACTH----AGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSR----AG 631 (838)
Q Consensus 560 g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r----~G 631 (838)
|++++|++.|++..+.+ +...+..+...+.. .+++++|..+|+...+. .+...+..+..+|.+ .|
T Consensus 128 ~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~ 200 (273)
T 1ouv_A 128 RDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATK 200 (273)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCC
T ss_pred cCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCc
Confidence 99999999999999865 55667777777777 89999999999998743 245667788899999 99
Q ss_pred CHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHh----cCCchHHHHHHHHHhhCCC
Q 046257 632 MLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAA----TGHWQERARVRKLMNDRKV 700 (838)
Q Consensus 632 ~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~----~g~~~~a~~~~~~m~~~g~ 700 (838)
++++|.+.+++. ++.+| +..+..|+.+|.. .|++++|.+.+++..+.|.
T Consensus 201 ~~~~A~~~~~~a------------------~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 201 NFKEALARYSKA------------------CELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp CHHHHHHHHHHH------------------HHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHH------------------HhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCC
Confidence 999999999876 44444 7788899999999 9999999999998877653
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.23 E-value=1.6e-10 Score=114.16 Aligned_cols=195 Identities=13% Similarity=-0.040 Sum_probs=144.3
Q ss_pred CcccHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcccHHHHHHHhccCCChhhHHHHHHHHHHhCCCCChhHHHHHHH
Q 046257 42 NFVEYNRLLFEYCRDSLHQEALNLFLGIRRLGLPLFGSTLSSVLKTCGCLFDHVFGRQVHCECVKSGFARDVNVSTSLVD 121 (838)
Q Consensus 42 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 121 (838)
+...|..+...+.+.|++++|+..|++..+.. |.+...+..+...+.+.|++++|...++.+++.. +.+...+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 55677888888999999999999999988754 4566778888888889999999999999988876 346677888888
Q ss_pred HHHhC-----------CChHHHHHHHccCCC--C-CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHH
Q 046257 122 LYMRT-----------NNVEDGRRVFDDMNE--S-NVVSWTSLLSGYARNKMNDRVLELFHRMQVEGIKPNSFTFSTVLG 187 (838)
Q Consensus 122 ~y~~~-----------g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 187 (838)
.|.+. |++++|...|+...+ | +...|..+...|...|++++|+..|++..+.. .+...+..+..
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~ 159 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAE 159 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHH
Confidence 88888 888888888877653 3 45678888888888888888888888887766 67777888888
Q ss_pred HHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHcCCChhHHHHHHhcCC
Q 046257 188 VLADEGIVATAVQVHTMVIKNGGEVVTSVCNALISMYLKSKMVRDARAVFDGME 241 (838)
Q Consensus 188 ~~~~~g~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~ 241 (838)
++...|++++|...++.+++.. +.+..++..+...+.+.|+.++|...|++..
T Consensus 160 ~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 160 LYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 8888888888888888888775 4566777777778888888888877776543
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.23 E-value=2.1e-10 Score=115.18 Aligned_cols=198 Identities=14% Similarity=0.117 Sum_probs=149.6
Q ss_pred CcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHH
Q 046257 443 DIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALV 522 (838)
Q Consensus 443 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 522 (838)
....|..+...+.+.|++++|+..|+++.+. .|+ +...+..+.
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~~~-----------------------------------~~~~~~~la 64 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEE--NKE-----------------------------------DAIPYINFA 64 (243)
T ss_dssp --------------------CCTTHHHHHTT--CTT-----------------------------------CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh--Ccc-----------------------------------cHHHHHHHH
Confidence 4567788888888899999999999888763 232 223444566
Q ss_pred HHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHH
Q 046257 523 TMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGITFIGVITACTHAGLVDE 599 (838)
Q Consensus 523 ~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~ 599 (838)
..|.+.|++++|.+.|++.. +.+...|..+...|...|++++|++.|+++.+.. +.+...+..+...+...|++++
T Consensus 65 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~ 143 (243)
T 2q7f_A 65 NLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKL 143 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHH
Confidence 67889999999999998765 4578899999999999999999999999999853 2346678888899999999999
Q ss_pred HHHHHHHHHhcCCccCCCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHH
Q 046257 600 GQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMY 679 (838)
Q Consensus 600 a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y 679 (838)
|..+++.+.+.. +.+...+..+...+.+.|++++|.+.++++ ++..|+++..+..++.+|
T Consensus 144 A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~------------------~~~~~~~~~~~~~la~~~ 203 (243)
T 2q7f_A 144 ALPYLQRAVELN--ENDTEARFQFGMCLANEGMLDEALSQFAAV------------------TEQDPGHADAFYNAGVTY 203 (243)
T ss_dssp HHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCCHHHHHHHHHH------------------HHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC--CccHHHHHHHHHHHHHcCCHHHHHHHHHHH------------------HHhCcccHHHHHHHHHHH
Confidence 999999988542 234567888999999999999999999987 678899999999999999
Q ss_pred HhcCCchHHHHHHHHHhhC
Q 046257 680 AATGHWQERARVRKLMNDR 698 (838)
Q Consensus 680 ~~~g~~~~a~~~~~~m~~~ 698 (838)
...|++++|.+.++++.+.
T Consensus 204 ~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 204 AYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHTTCTTHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHcc
Confidence 9999999999999998763
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.23 E-value=2.2e-10 Score=117.41 Aligned_cols=222 Identities=11% Similarity=-0.009 Sum_probs=174.5
Q ss_pred hcCCchHHHHHHHHhhcCCCC--C-CHhhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHH
Q 046257 456 QIGDTEGAVKIYRQLTSEGVK--P-NEFTFSSVINACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIE 532 (838)
Q Consensus 456 ~~g~~~~A~~l~~~m~~~g~~--p-~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~ 532 (838)
..|++++|++.|+++.+.... | +..++..+...+... +..+.+...+..+++.. +.+...+..+...|.+.|+++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSL-GLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHc-ccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHH
Confidence 457899999999999876321 2 345566666677777 99999999999988875 346788899999999999999
Q ss_pred HHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 046257 533 SASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGITFIGVITACTHAGLVDEGQQYFDIMVN 609 (838)
Q Consensus 533 ~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 609 (838)
+|.+.|++.. +.+...|..+...|...|++++|++.|+++.+ ..|+.......+..+...|++++|..+++....
T Consensus 95 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 95 AAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ--DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 9999999876 45788999999999999999999999999998 567766555566666778999999999988774
Q ss_pred cCCccCCCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHH
Q 046257 610 EHHIYPTMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERA 689 (838)
Q Consensus 610 ~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~ 689 (838)
.. +++... ..++..+...++.++|.+.+++.- ..+ .+..|.++..+..++.+|...|++++|.
T Consensus 173 ~~--~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~-~~~-------------~~~~~~~~~~~~~la~~~~~~g~~~~A~ 235 (275)
T 1xnf_A 173 KS--DKEQWG-WNIVEFYLGNISEQTLMERLKADA-TDN-------------TSLAEHLSETNFYLGKYYLSLGDLDSAT 235 (275)
T ss_dssp HS--CCCSTH-HHHHHHHTTSSCHHHHHHHHHHHC-CSH-------------HHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cC--CcchHH-HHHHHHHHHhcCHHHHHHHHHHHh-ccc-------------ccccccccHHHHHHHHHHHHcCCHHHHH
Confidence 42 233344 447778888889999999998762 111 0112234678899999999999999999
Q ss_pred HHHHHHhhC
Q 046257 690 RVRKLMNDR 698 (838)
Q Consensus 690 ~~~~~m~~~ 698 (838)
..+++..+.
T Consensus 236 ~~~~~al~~ 244 (275)
T 1xnf_A 236 ALFKLAVAN 244 (275)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHhC
Confidence 999999764
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.22 E-value=2.9e-10 Score=114.94 Aligned_cols=204 Identities=11% Similarity=0.028 Sum_probs=122.1
Q ss_pred HhhccCCCCC--cccHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcccHHHHHHHhccCCChhhHHHHHHHHHHhCCC
Q 046257 33 SLFDRSPQRN--FVEYNRLLFEYCRDSLHQEALNLFLGIRRLGLPLFGSTLSSVLKTCGCLFDHVFGRQVHCECVKSGFA 110 (838)
Q Consensus 33 ~~f~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~ 110 (838)
..|..-..|+ ...|..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|...+..+++...
T Consensus 25 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~- 102 (252)
T 2ho1_A 25 NPLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDS- 102 (252)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-
T ss_pred CccccccchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-
Confidence 3344444443 5678888888999999999999999988764 34555666677777777777777777777766542
Q ss_pred CChhHHHHHHHHHHhCCChHHHHHHHccCCC----C-CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHH
Q 046257 111 RDVNVSTSLVDLYMRTNNVEDGRRVFDDMNE----S-NVVSWTSLLSGYARNKMNDRVLELFHRMQVEGIKPNSFTFSTV 185 (838)
Q Consensus 111 ~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~----~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 185 (838)
.+..++..+...|...|++++|.+.|+.+.. | +...|..+...|.+.|++++|...|++..+
T Consensus 103 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~------------- 169 (252)
T 2ho1_A 103 RNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLR------------- 169 (252)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------------
T ss_pred CcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-------------
Confidence 3455566666666666666666666655443 1 223455555555555555555555555544
Q ss_pred HHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHcCCChhHHHHHHhcCCC---CCcchHHHHHHHHHhCCChH
Q 046257 186 LGVLADEGIVATAVQVHTMVIKNGGEVVTSVCNALISMYLKSKMVRDARAVFDGMED---RDSITWNSMVAGYVTNELHM 262 (838)
Q Consensus 186 l~~~~~~g~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~n~li~~~~~~g~~~ 262 (838)
.. +.+..++..+...|.+.|++++|...|+...+ .+...|..+...+...|+++
T Consensus 170 ----------------------~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 226 (252)
T 2ho1_A 170 ----------------------LN-RNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRD 226 (252)
T ss_dssp ----------------------HC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHH
T ss_pred ----------------------cC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHH
Confidence 32 22344445555555555555555555554332 23445566666666777777
Q ss_pred HHHHHHHHhhhC
Q 046257 263 EAFETFNNMGLA 274 (838)
Q Consensus 263 ~A~~l~~~m~~~ 274 (838)
+|.+.++++.+.
T Consensus 227 ~A~~~~~~~~~~ 238 (252)
T 2ho1_A 227 TAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777777776654
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.9e-10 Score=125.45 Aligned_cols=160 Identities=13% Similarity=0.056 Sum_probs=116.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcC-----CCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-CC----h
Q 046257 516 CVSSALVTMYSKKGNIESASEVFKRQR-----KRD----LVSWNSMICGYAQHGHTKKALEVFKEMRRQDLE-FD----G 581 (838)
Q Consensus 516 ~~~~~li~~y~k~g~~~~A~~~f~~~~-----~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-pd----~ 581 (838)
.++..+...|...|++++|.+.|++.. .++ ..+|..+...|...|++++|+..|++..+.... ++ .
T Consensus 188 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 267 (406)
T 3sf4_A 188 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 267 (406)
T ss_dssp HHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHH
Confidence 355667788999999999999988765 222 247888999999999999999999998763111 11 3
Q ss_pred hHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCC----CchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHH
Q 046257 582 ITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPT----MEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLA 657 (838)
Q Consensus 582 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~ 657 (838)
.++..+...+...|++++|..+++...+...-.++ ...+..+...|.+.|++++|.+.+++.- .
T Consensus 268 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al------------~ 335 (406)
T 3sf4_A 268 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL------------E 335 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH------------H
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH------------H
Confidence 56778888999999999999999987643211112 3467788999999999999999998751 0
Q ss_pred HHHHhccCCCCchhHHHHHHHHHhcCCchH
Q 046257 658 ACRLISLQPHDSAIYVLLSNMYAATGHWQE 687 (838)
Q Consensus 658 ~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~ 687 (838)
-+.-....|....++..++.+|...|+...
T Consensus 336 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 336 ISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 000111123345677888888888887643
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.21 E-value=3.2e-10 Score=116.09 Aligned_cols=231 Identities=9% Similarity=-0.003 Sum_probs=178.6
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCH-hhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCc--hhHHHHH
Q 046257 445 VAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNE-FTFSSVINACTAPSAAVEQGKQFHACSIKAKLNNA--LCVSSAL 521 (838)
Q Consensus 445 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l 521 (838)
..+......+.+.|++++|+..|++..+. .|+. ..+..+...+... +..+.+...+..+++....++ ...+..+
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~~~~l 80 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAK--KYNSPYIYNRRAVCYYEL-AKYDLAQKDIETYFSKVNATKAKSADFEYY 80 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHT--TCCCSTTHHHHHHHHHHT-TCHHHHHHHHHHHHTTSCTTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHH-hhHHHHHHHHHHHHhccCchhHHHHHHHHH
Confidence 34556778889999999999999999874 4444 3666666677777 999999999999988442222 2337889
Q ss_pred HHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh-hHHHHHHHHHhccCCH
Q 046257 522 VTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDG-ITFIGVITACTHAGLV 597 (838)
Q Consensus 522 i~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~ 597 (838)
...|.+.|++++|.+.|++.. +.+...|..+...|...|++++|++.|++..+ ..|+. .++..+...+...+++
T Consensus 81 g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~ 158 (272)
T 3u4t_A 81 GKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIR--PTTTDPKVFYELGQAYYYNKEY 158 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCC--SSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhh--cCCCcHHHHHHHHHHHHHHHHH
Confidence 999999999999999999775 45678999999999999999999999999988 46664 4566666355556799
Q ss_pred HHHHHHHHHHHhcCCccCC-CchHHHHHHHHHhcCC---HHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCC-----
Q 046257 598 DEGQQYFDIMVNEHHIYPT-MEHYSCMVDLYSRAGM---LEKAMDIINRMPFAASATVWRTVLAACRLISLQPHD----- 668 (838)
Q Consensus 598 ~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~G~---~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~----- 668 (838)
++|.+.|+.+.+. .|+ ...+..+..++...|+ +++|...++++- .+.+-.|+.
T Consensus 159 ~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~---------------~~~~~~~~~~~~~~ 220 (272)
T 3u4t_A 159 VKADSSFVKVLEL---KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLI---------------EVCAPGGAKYKDEL 220 (272)
T ss_dssp HHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHH---------------HHHGGGGGGGHHHH
T ss_pred HHHHHHHHHHHHh---CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHH---------------HHHhcccccchHHH
Confidence 9999999999854 454 4567778888888888 777888877651 011112321
Q ss_pred chhHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 046257 669 SAIYVLLSNMYAATGHWQERARVRKLMNDR 698 (838)
Q Consensus 669 ~~~y~~l~~~y~~~g~~~~a~~~~~~m~~~ 698 (838)
...|..++.+|...|++++|.+.+++..+.
T Consensus 221 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 250 (272)
T 3u4t_A 221 IEANEYIAYYYTINRDKVKADAAWKNILAL 250 (272)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 257888999999999999999999998763
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.19 E-value=6.6e-10 Score=119.22 Aligned_cols=242 Identities=8% Similarity=0.097 Sum_probs=167.1
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCH-hhHHHHHHHhcCChhh-HHHHHHHHHHHHHhcCCCchhHHHHHHHH
Q 046257 447 WSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNE-FTFSSVINACTAPSAA-VEQGKQFHACSIKAKLNNALCVSSALVTM 524 (838)
Q Consensus 447 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 524 (838)
|+.+...+.+.|++++|++.|++... +.|+. ..|..+-..+... +. ++.+...+..+++.. +.+...+..+..+
T Consensus 100 ~~~lg~~~~~~g~~~~Al~~~~~al~--l~P~~~~a~~~~g~~l~~~-g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 100 YDYFRAVLQRDERSERAFKLTRDAIE--LNAANYTVWHFRRVLLKSL-QKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHH--hCccCHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 33444444444444444444444443 22322 2222222223333 32 444444444444433 2245566667777
Q ss_pred HHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhc-cCCHHH
Q 046257 525 YSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITACTH-AGLVDE 599 (838)
Q Consensus 525 y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~-~g~~~~ 599 (838)
|.+.|++++|...|+++. +.+...|..+...+...|++++|++.|+++++ +.|+ ...|..+..++.. .|..++
T Consensus 176 ~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~--l~P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK--EDVRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCcchH
Confidence 889999999999999876 56889999999999999999999999999999 5675 5678888888888 666577
Q ss_pred H-----HHHHHHHHhcCCccCC-CchHHHHHHHHHhcC--CHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchh
Q 046257 600 G-----QQYFDIMVNEHHIYPT-MEHYSCMVDLYSRAG--MLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAI 671 (838)
Q Consensus 600 a-----~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~G--~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~ 671 (838)
| ..+|+..++ +.|+ ...|..+..+|.+.| ++++|.++++++ +.+|+++.+
T Consensus 254 A~~~~el~~~~~Al~---l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-------------------~~~p~~~~a 311 (382)
T 2h6f_A 254 AVLEREVQYTLEMIK---LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-------------------QPSHSSPYL 311 (382)
T ss_dssp HHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-------------------TTTCCCHHH
T ss_pred HHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-------------------ccCCCCHHH
Confidence 7 588888774 4564 457888888898888 688998888764 457889999
Q ss_pred HHHHHHHHHhcC---------CchHHHHHHHHH-hhCCCccCCceeEEEECCEEEEEeeCCCCCCChHHHHHHHHHHHHH
Q 046257 672 YVLLSNMYAATG---------HWQERARVRKLM-NDRKVKKEAGYSWIEVKNKTYSFLAGDISHPQSNQIYSKLEELSTR 741 (838)
Q Consensus 672 y~~l~~~y~~~g---------~~~~a~~~~~~m-~~~g~~~~~~~s~i~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~ 741 (838)
+..|+.+|...| ..++|.++++++ .+ ..|...+.|..+......
T Consensus 312 l~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~--------------------------~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 312 IAFLVDIYEDMLENQCDNKEDILNKALELCEILAKE--------------------------KDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHT--------------------------TCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHH--------------------------hCchhHHHHHHHHHHHHH
Confidence 999999999985 258999999998 44 246667777766665554
Q ss_pred H
Q 046257 742 L 742 (838)
Q Consensus 742 ~ 742 (838)
+
T Consensus 366 ~ 366 (382)
T 2h6f_A 366 K 366 (382)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=1.6e-10 Score=134.04 Aligned_cols=161 Identities=16% Similarity=0.234 Sum_probs=145.3
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHH
Q 046257 514 ALCVSSALVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVIT 589 (838)
Q Consensus 514 ~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~ 589 (838)
+...++.|...|.+.|++++|++.|++.. +.+...|+.+...|.+.|++++|++.|++.++ +.|+ ...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 46678889999999999999999999875 45688999999999999999999999999999 6787 568999999
Q ss_pred HHhccCCHHHHHHHHHHHHhcCCccCC-CchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCC
Q 046257 590 ACTHAGLVDEGQQYFDIMVNEHHIYPT-MEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHD 668 (838)
Q Consensus 590 a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~ 668 (838)
++...|++++|.+.|++.++ +.|+ ...|..+..+|.+.|++++|++.+++. ++++|++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~---l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~A------------------l~l~P~~ 144 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQ---INPAFADAHSNLASIHKDSGNIPEAIASYRTA------------------LKLKPDF 144 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH------------------HHHCSCC
T ss_pred HHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH------------------HHhCCCC
Confidence 99999999999999999884 3564 568899999999999999999999987 8999999
Q ss_pred chhHHHHHHHHHhcCCchHHHHHHHHHhh
Q 046257 669 SAIYVLLSNMYAATGHWQERARVRKLMND 697 (838)
Q Consensus 669 ~~~y~~l~~~y~~~g~~~~a~~~~~~m~~ 697 (838)
+.+|..|+.+|...|+|++|.+.+++..+
T Consensus 145 ~~a~~~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 145 PDAYCNLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred hHHHhhhhhHHHhcccHHHHHHHHHHHHH
Confidence 99999999999999999999998887653
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.18 E-value=6.7e-11 Score=129.51 Aligned_cols=267 Identities=13% Similarity=0.078 Sum_probs=196.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHhcCC--C-Cc----chHHHHHHHHHhcCCchHHHHHHHHhhcC----CCCCC-HhhHHHH
Q 046257 418 ALLNAYVKKGILDEAAKVFELIDE--K-DI----VAWSAMLAGYAQIGDTEGAVKIYRQLTSE----GVKPN-EFTFSSV 485 (838)
Q Consensus 418 ~Li~~y~~~g~~~~A~~~f~~~~~--~-~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~t~~~l 485 (838)
.+...+...|++++|...|++..+ + +. ..|..+...|...|++++|++.|++.... +-.|. ...+..+
T Consensus 53 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 132 (411)
T 4a1s_A 53 LEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNL 132 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHH
Confidence 466778899999999999987754 2 22 46888999999999999999999987652 11222 2344555
Q ss_pred HHHhcCChhhHHHHHHHHHHHHHhc-----CCCchhHHHHHHHHHHhcCC-----------------HHHHHHHHHhcCC
Q 046257 486 INACTAPSAAVEQGKQFHACSIKAK-----LNNALCVSSALVTMYSKKGN-----------------IESASEVFKRQRK 543 (838)
Q Consensus 486 l~a~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~li~~y~k~g~-----------------~~~A~~~f~~~~~ 543 (838)
-..+... +.++.+...+..+++.. .......+..+...|...|+ +++|.+.+++...
T Consensus 133 ~~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~ 211 (411)
T 4a1s_A 133 GNTLKVM-GRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLK 211 (411)
T ss_dssp HHHHHHT-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHC-CCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHH
Confidence 5556666 88999988888776542 12235577888899999999 9999988876531
Q ss_pred -----C----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-CC----hhHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 046257 544 -----R----DLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLE-FD----GITFIGVITACTHAGLVDEGQQYFDIMVN 609 (838)
Q Consensus 544 -----~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-pd----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 609 (838)
. ...+|..+...|...|++++|++.|++..+.... ++ ..++..+...+...|++++|..+++....
T Consensus 212 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 291 (411)
T 4a1s_A 212 LMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLA 291 (411)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 1 2357888999999999999999999998873111 12 13678888899999999999999998764
Q ss_pred cCCccC----CCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCc
Q 046257 610 EHHIYP----TMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHW 685 (838)
Q Consensus 610 ~~~~~p----~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~ 685 (838)
...-.. ....+..+..+|.+.|++++|.+.+++.- ..+.-....+.....|..++.+|...|++
T Consensus 292 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al------------~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 359 (411)
T 4a1s_A 292 LAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHL------------AIAQELGDRIGEARACWSLGNAHSAIGGH 359 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH------------HHHHHHTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH------------HHHHHCCChHHHHHHHHHHHHHHHHhccH
Confidence 321111 13567788999999999999999998761 00000111122345788999999999999
Q ss_pred hHHHHHHHHHhh
Q 046257 686 QERARVRKLMND 697 (838)
Q Consensus 686 ~~a~~~~~~m~~ 697 (838)
++|...+++..+
T Consensus 360 ~~A~~~~~~al~ 371 (411)
T 4a1s_A 360 ERALKYAEQHLQ 371 (411)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998765
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.18 E-value=3e-09 Score=109.07 Aligned_cols=220 Identities=13% Similarity=0.031 Sum_probs=130.3
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHHhc----CCChHHHHHHHHHHHHhCCCCchhHHHHHH
Q 046257 146 SWTSLLSGYARNKMNDRVLELFHRMQVEGIKPNSFTFSTVLGVLAD----EGIVATAVQVHTMVIKNGGEVVTSVCNALI 221 (838)
Q Consensus 146 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~a~~l~~~~~~~g~~~~~~~~~~li 221 (838)
++..+...|.+.|++++|+..|++..+. -+..++..+...+.. .+++++|...+....+.+ +...+..+.
T Consensus 8 a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 81 (273)
T 1ouv_A 8 ELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLG 81 (273)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 3444444444455555555555544441 123344444444444 555555555555555543 344444555
Q ss_pred HHhHc----CCChhHHHHHHhcCCC-CCcchHHHHHHHHHh----CCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhc
Q 046257 222 SMYLK----SKMVRDARAVFDGMED-RDSITWNSMVAGYVT----NELHMEAFETFNNMGLAGAELTRSTFVSVIKLCAT 292 (838)
Q Consensus 222 ~~y~~----~g~~~~A~~~f~~m~~-~~~~~~n~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~ 292 (838)
..|.. .+++++|...|++..+ .+..++..+...|.. .+++++|++.|++..+.+ +...+..+-..+..
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~ 158 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDA 158 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHc
Confidence 55555 5555555555554332 244455555556666 666677777776666554 34445555555555
Q ss_pred ----cCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHc----CCChHHHHHHHHhcccCCCeeehHHHHHHHHH----c
Q 046257 293 ----TKELRLARQLHSQVLKNGIDFDHNIRTGLMVAYSK----CGKMEDASKIFSMMREMKDVVSWTAMISGHLQ----N 360 (838)
Q Consensus 293 ----~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~----~g~~~~A~~~f~~~~~~~~~~~~~~li~~~~~----~ 360 (838)
.++.++|...++...+.+ +...+..+..+|.. .++.++|...|++..+..+...+..+...|.+ .
T Consensus 159 ~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~ 235 (273)
T 1ouv_A 159 GRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGEGVT 235 (273)
T ss_dssp TSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSS
T ss_pred CCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcc
Confidence 677777777777777654 34566667777777 78888888888776544455667777777777 7
Q ss_pred CChHHHHHHHHHhhhcC
Q 046257 361 GAIDLAVNFFCQMTREG 377 (838)
Q Consensus 361 g~~~~A~~l~~~m~~~g 377 (838)
+++++|++.|++..+.|
T Consensus 236 ~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 236 RNEKQAIENFKKGCKLG 252 (273)
T ss_dssp CCSTTHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHcC
Confidence 88888888888877764
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.18 E-value=5.6e-10 Score=119.76 Aligned_cols=241 Identities=10% Similarity=0.050 Sum_probs=176.4
Q ss_pred ehHHHHHHHHHcCChHHHHHHHHHhhhcCCCCCcccHHHHHhhCCCCChhHHHHHHHHhhccCCcchhhHHHHHHHHcCC
Q 046257 349 SWTAMISGHLQNGAIDLAVNFFCQMTREGVRPNGFTYSIILTAQPAVSPFQVHAHIIKTNYEKSFSVGTALLNAYVKKGI 428 (838)
Q Consensus 349 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~y~~~g~ 428 (838)
.|+.+...+.+.|++++|++.|++.... .|+..+ +++.+...|.+.|+
T Consensus 99 a~~~lg~~~~~~g~~~~Al~~~~~al~l--~P~~~~------------------------------a~~~~g~~l~~~g~ 146 (382)
T 2h6f_A 99 VYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYT------------------------------VWHFRRVLLKSLQK 146 (382)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHH------------------------------HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHh--CccCHH------------------------------HHHHHHHHHHHccc
Confidence 4566666677777777777777777653 343322 23456666777775
Q ss_pred -HHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCChhhHHHHHHHHH
Q 046257 429 -LDEAAKVFELIDE---KDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFHA 504 (838)
Q Consensus 429 -~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~ 504 (838)
+++|...|++..+ .+...|+.+...|.+.|++++|+..|+++.+. .|+
T Consensus 147 d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~l--dP~-------------------------- 198 (382)
T 2h6f_A 147 DLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQ--DAK-------------------------- 198 (382)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTT--------------------------
T ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--Ccc--------------------------
Confidence 7777777776653 35677888888899999999999999888762 333
Q ss_pred HHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHH-cCChHHH-----HHHHHHHHHc
Q 046257 505 CSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQ-HGHTKKA-----LEVFKEMRRQ 575 (838)
Q Consensus 505 ~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~-~g~~~~A-----~~l~~~m~~~ 575 (838)
+...+..+..+|.+.|++++|...|+++. ..+...|+.+...|.. .|..++| ++.|++.++
T Consensus 199 ---------~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~- 268 (382)
T 2h6f_A 199 ---------NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIK- 268 (382)
T ss_dssp ---------CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHH-
T ss_pred ---------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHH-
Confidence 23344455566788899999999998876 4578899999999999 6666777 589999998
Q ss_pred CCCCC-hhHHHHHHHHHhccC--CHHHHHHHHHHHHhcCCccC-CCchHHHHHHHHHhcC---------CHHHHHHHHhh
Q 046257 576 DLEFD-GITFIGVITACTHAG--LVDEGQQYFDIMVNEHHIYP-TMEHYSCMVDLYSRAG---------MLEKAMDIINR 642 (838)
Q Consensus 576 g~~pd-~~t~~~ll~a~~~~g--~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~G---------~~~~A~~~~~~ 642 (838)
+.|+ ...|..+...+...| ++++|.+.+..+ ...| +...+..++++|.+.| .+++|.+++++
T Consensus 269 -l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~----~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~ 343 (382)
T 2h6f_A 269 -LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL----QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEI 343 (382)
T ss_dssp -HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH----TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred -HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh----ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHH
Confidence 6776 457888888888888 589999988876 2344 4456888999998875 35889999987
Q ss_pred CCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHh
Q 046257 643 MPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAA 681 (838)
Q Consensus 643 m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~ 681 (838)
+. .+++|.....|..++..+..
T Consensus 344 l~-----------------~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 344 LA-----------------KEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HH-----------------HTTCGGGHHHHHHHHHHHHH
T ss_pred HH-----------------HHhCchhHHHHHHHHHHHHH
Confidence 52 47788788877777666554
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.17 E-value=4e-08 Score=112.59 Aligned_cols=145 Identities=10% Similarity=0.085 Sum_probs=101.1
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHccCCC--C-CcchHHHHHHHHHhCCC---chHHHHHHHHH
Q 046257 97 GRQVHCECVKSGFARDVNVSTSLVDLYMRTNNVEDGRRVFDDMNE--S-NVVSWTSLLSGYARNKM---NDRVLELFHRM 170 (838)
Q Consensus 97 a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~---~~~A~~l~~~m 170 (838)
....++..+... +.|...|..++..+.+.+.++.|+.+|+.+.. | ....|..-+..-.+.|+ .+.+.++|++.
T Consensus 51 ~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRa 129 (679)
T 4e6h_A 51 VIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARC 129 (679)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHH
Confidence 344555556665 46899999999999999999999999998875 3 44578888888888888 99999999998
Q ss_pred HHCC-CCCChhhHHHHHHHHhcCCCh--------HHHHHHHHHHHHh-CC-CCc-hhHHHHHHHHhHc---------CCC
Q 046257 171 QVEG-IKPNSFTFSTVLGVLADEGIV--------ATAVQVHTMVIKN-GG-EVV-TSVCNALISMYLK---------SKM 229 (838)
Q Consensus 171 ~~~g-~~p~~~t~~~ll~~~~~~g~~--------~~a~~l~~~~~~~-g~-~~~-~~~~~~li~~y~~---------~g~ 229 (838)
.... ..|+...|..-+....+.++. +..+++|+.++.. |. .++ ..+|...+..... .++
T Consensus 130 l~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~ 209 (679)
T 4e6h_A 130 LSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQR 209 (679)
T ss_dssp TCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHH
T ss_pred HHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhH
Confidence 8754 247777777766655444432 3455788877664 65 443 4677777765443 234
Q ss_pred hhHHHHHHhcCCC
Q 046257 230 VRDARAVFDGMED 242 (838)
Q Consensus 230 ~~~A~~~f~~m~~ 242 (838)
++.++++|+....
T Consensus 210 ~~~~R~iy~raL~ 222 (679)
T 4e6h_A 210 VQYIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHh
Confidence 6677777776553
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.15 E-value=2.5e-09 Score=105.59 Aligned_cols=206 Identities=11% Similarity=-0.030 Sum_probs=119.5
Q ss_pred cchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 046257 144 VVSWTSLLSGYARNKMNDRVLELFHRMQVEGIKPNSFTFSTVLGVLADEGIVATAVQVHTMVIKNGGEVVTSVCNALISM 223 (838)
Q Consensus 144 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~l~~~~~~~g~~~~~~~~~~li~~ 223 (838)
...|..+...+...|++++|++.|+++.+.. +.+...+..+...+...|++++|...+..+++.. +.+..+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~------- 78 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEI------- 78 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH-------
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHH-------
Confidence 4456667777777777777777777766543 1234556666666666666666666666665543 223334
Q ss_pred hHcCCChhHHHHHHhcCCCCCcchHHHHHHHHHhC-CChHHHHHHHHHhhhCCCCCC-hhhHHHHHHHHhccCcHHHHHH
Q 046257 224 YLKSKMVRDARAVFDGMEDRDSITWNSMVAGYVTN-ELHMEAFETFNNMGLAGAELT-RSTFVSVIKLCATTKELRLARQ 301 (838)
Q Consensus 224 y~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~-g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~ 301 (838)
|..+...+... |++++|++.|+++.+.+..|+ ...+..+...+...|++++|..
T Consensus 79 ------------------------~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 134 (225)
T 2vq2_A 79 ------------------------NNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEA 134 (225)
T ss_dssp ------------------------HHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ------------------------HHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHH
Confidence 44444455555 555555555555544222232 2344445555555566666666
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHHhccc--C-CCeeehHHHHHHHHHcCChHHHHHHHHHhhhcCC
Q 046257 302 LHSQVLKNGIDFDHNIRTGLMVAYSKCGKMEDASKIFSMMRE--M-KDVVSWTAMISGHLQNGAIDLAVNFFCQMTREGV 378 (838)
Q Consensus 302 ~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~--~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 378 (838)
.+..+++.. +.+...+..+...|.+.|++++|...|+.... + .+...|..+...+...|+.++|..+++.+...
T Consensus 135 ~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-- 211 (225)
T 2vq2_A 135 YLKRSLAAQ-PQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN-- 211 (225)
T ss_dssp HHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--
Confidence 665555543 23455566666667777777777777666543 3 44555666666677777777777777776643
Q ss_pred CCCcccH
Q 046257 379 RPNGFTY 385 (838)
Q Consensus 379 ~pd~~t~ 385 (838)
.|+...+
T Consensus 212 ~p~~~~~ 218 (225)
T 2vq2_A 212 FPYSEEL 218 (225)
T ss_dssp CTTCHHH
T ss_pred CCCCHHH
Confidence 3444433
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.15 E-value=2.3e-10 Score=127.54 Aligned_cols=207 Identities=12% Similarity=0.043 Sum_probs=166.1
Q ss_pred HHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCc-hHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCChhhHHHHHHHHH
Q 046257 429 LDEAAKVFELIDE---KDIVAWSAMLAGYAQIGDT-EGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFHA 504 (838)
Q Consensus 429 ~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~-~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~ 504 (838)
++++...++.... .+...|..+...|...|++ ++|++.|++..+. .|
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--~p--------------------------- 134 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--EP--------------------------- 134 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--CT---------------------------
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--CC---------------------------
Confidence 5555555554432 2445666666666677777 7777777666542 22
Q ss_pred HHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCHHHHHHHHHHHHHc---------CChHHHHHHHHHHH
Q 046257 505 CSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQR--KRDLVSWNSMICGYAQH---------GHTKKALEVFKEMR 573 (838)
Q Consensus 505 ~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~---------g~~~~A~~l~~~m~ 573 (838)
.+...+..+...|.+.|++++|.+.|++.. .|+...|..+...|... |++++|++.|++..
T Consensus 135 --------~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al 206 (474)
T 4abn_A 135 --------ELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAV 206 (474)
T ss_dssp --------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHH
T ss_pred --------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHH
Confidence 234556667788999999999999999875 67778899999999999 99999999999999
Q ss_pred HcCCCCC-hhHHHHHHHHHhcc--------CCHHHHHHHHHHHHhcCCccC----CCchHHHHHHHHHhcCCHHHHHHHH
Q 046257 574 RQDLEFD-GITFIGVITACTHA--------GLVDEGQQYFDIMVNEHHIYP----TMEHYSCMVDLYSRAGMLEKAMDII 640 (838)
Q Consensus 574 ~~g~~pd-~~t~~~ll~a~~~~--------g~~~~a~~~~~~m~~~~~~~p----~~~~y~~lv~~l~r~G~~~~A~~~~ 640 (838)
+ +.|+ ...+..+..++... |++++|.+.|+...+. .| +...|..+..+|.+.|++++|.+.+
T Consensus 207 ~--~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 281 (474)
T 4abn_A 207 Q--MDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV---DRKASSNPDLHLNRATLHKYEESYGEALEGF 281 (474)
T ss_dssp H--HCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH---CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred H--hCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh---CCCcccCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9 5665 56788888888888 9999999999999843 45 5678899999999999999999999
Q ss_pred hhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHH
Q 046257 641 NRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLM 695 (838)
Q Consensus 641 ~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m 695 (838)
++. ++++|+++.++..++.+|...|++++|.+.+.++
T Consensus 282 ~~a------------------l~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 282 SQA------------------AALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHH------------------HHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHH------------------HHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 987 7899999999999999999999999999865544
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.14 E-value=2.1e-09 Score=102.31 Aligned_cols=161 Identities=11% Similarity=0.058 Sum_probs=139.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHH
Q 046257 516 CVSSALVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEF-DGITFIGVITAC 591 (838)
Q Consensus 516 ~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~ 591 (838)
..+..+...|...|++++|.+.|+++. +.+...|..+...|...|++++|++.|+++.+. .| +...+..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHH
Confidence 345567778899999999999999887 346788999999999999999999999999985 45 466788888899
Q ss_pred hccCCHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchh
Q 046257 592 THAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAI 671 (838)
Q Consensus 592 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~ 671 (838)
...|++++|.++++.+.+.. +.+...+..+...+.+.|++++|.+.++++ ++..|+++..
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~------------------~~~~~~~~~~ 146 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN--PINFNVRFRLGVALDNLGRFDEAIDSFKIA------------------LGLRPNEGKV 146 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH------------------HHHCTTCHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC--cHhHHHHHHHHHHHHHcCcHHHHHHHHHHH------------------HhcCccchHH
Confidence 99999999999999988542 235567888899999999999999999987 6778999999
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHhhC
Q 046257 672 YVLLSNMYAATGHWQERARVRKLMNDR 698 (838)
Q Consensus 672 y~~l~~~y~~~g~~~~a~~~~~~m~~~ 698 (838)
+..++.+|...|++++|.+.++...+.
T Consensus 147 ~~~la~~~~~~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 147 HRAIAFSYEQMGRHEEALPHFKKANEL 173 (186)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 999999999999999999999988653
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.13 E-value=3.3e-09 Score=110.96 Aligned_cols=242 Identities=13% Similarity=0.107 Sum_probs=174.3
Q ss_pred HHHHHHHHhcCC---CCcchHHHHHHHHHh-------cCCc-------hHHHHHHHHhhcCCCCCCH-hhHHHHHHHhcC
Q 046257 430 DEAAKVFELIDE---KDIVAWSAMLAGYAQ-------IGDT-------EGAVKIYRQLTSEGVKPNE-FTFSSVINACTA 491 (838)
Q Consensus 430 ~~A~~~f~~~~~---~~~~~~~~li~~~~~-------~g~~-------~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~ 491 (838)
++|..+|++... .+...|..++..+.+ .|+. ++|..+|++.... +.|+. ..|..+...+..
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~-~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT-TTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH-hCcccHHHHHHHHHHHHh
Confidence 567777776654 466678888777753 5776 8999999998863 24544 466666666666
Q ss_pred ChhhHHHHHHHHHHHHHhcCCCchh-HHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHH-HcCChHHHH
Q 046257 492 PSAAVEQGKQFHACSIKAKLNNALC-VSSALVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYA-QHGHTKKAL 566 (838)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~-~~g~~~~A~ 566 (838)
. +..+.+..++..+++.... +.. ++..+...+.+.|++++|.++|++.. +.+...|........ ..|+.++|.
T Consensus 112 ~-~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 112 R-MKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp T-TCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred c-CCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 6 8899999999988874322 333 78889999999999999999999875 234455554433322 369999999
Q ss_pred HHHHHHHHcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCC--CchHHHHHHHHHhcCCHHHHHHHHhhC
Q 046257 567 EVFKEMRRQDLEFD-GITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPT--MEHYSCMVDLYSRAGMLEKAMDIINRM 643 (838)
Q Consensus 567 ~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~y~~lv~~l~r~G~~~~A~~~~~~m 643 (838)
++|++..+ ..|+ ...+..++..+...|++++|..+|+.......+.|+ ...|..++..+.+.|+.++|..+++++
T Consensus 190 ~~~~~al~--~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 190 KIFELGLK--KYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHH--HHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHH--hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999998 4565 567888888899999999999999999854334553 457888899999999999999998875
Q ss_pred ----CCCCCHHHHHHHHHHHHHhccCCCCchhHHHHH
Q 046257 644 ----PFAASATVWRTVLAACRLISLQPHDSAIYVLLS 676 (838)
Q Consensus 644 ----~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~ 676 (838)
|-.++...-..+..-.++++++|+++.....|+
T Consensus 268 ~~~~p~~~~~~~~~~~~~r~~~l~~~P~~~~~ln~lg 304 (308)
T 2ond_A 268 FTAFREEYEGKETALLVDRYKFMDLYPCSASELKALG 304 (308)
T ss_dssp HHHTTTTTSSCHHHHHHTTTCBTTBCSSCHHHHHTTT
T ss_pred HHHcccccccchHHHHHHHHHhcccCCCCHHHHHhcC
Confidence 322222211222222337788888887766553
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.11 E-value=2.9e-10 Score=120.04 Aligned_cols=268 Identities=13% Similarity=0.085 Sum_probs=193.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHhcCC--C-C----cchHHHHHHHHHhcCCchHHHHHHHHhhcC----CCCCC-HhhHHHH
Q 046257 418 ALLNAYVKKGILDEAAKVFELIDE--K-D----IVAWSAMLAGYAQIGDTEGAVKIYRQLTSE----GVKPN-EFTFSSV 485 (838)
Q Consensus 418 ~Li~~y~~~g~~~~A~~~f~~~~~--~-~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~t~~~l 485 (838)
.....+...|++++|...|++..+ + + ...|..+...|...|++++|++.+++.... +-.|. ..++..+
T Consensus 10 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 89 (338)
T 3ro2_A 10 LEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNL 89 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHH
Confidence 456678899999999999998753 2 2 356888899999999999999999887542 21222 2344555
Q ss_pred HHHhcCChhhHHHHHHHHHHHHHhcCC-Cc----hhHHHHHHHHHHhcCC--------------------HHHHHHHHHh
Q 046257 486 INACTAPSAAVEQGKQFHACSIKAKLN-NA----LCVSSALVTMYSKKGN--------------------IESASEVFKR 540 (838)
Q Consensus 486 l~a~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~li~~y~k~g~--------------------~~~A~~~f~~ 540 (838)
-..+... +.++.+...+....+.... .+ ..++..+...|...|+ +++|.+.+++
T Consensus 90 ~~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 168 (338)
T 3ro2_A 90 GNTLKVL-GNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEE 168 (338)
T ss_dssp HHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHc-cCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 5556666 8899999888877653211 11 3477788899999999 9999988876
Q ss_pred cCC-----C----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCC----hhHHHHHHHHHhccCCHHHHHHHHHH
Q 046257 541 QRK-----R----DLVSWNSMICGYAQHGHTKKALEVFKEMRRQDL-EFD----GITFIGVITACTHAGLVDEGQQYFDI 606 (838)
Q Consensus 541 ~~~-----~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~pd----~~t~~~ll~a~~~~g~~~~a~~~~~~ 606 (838)
... + ...+|..+...|...|++++|++.|++..+... .++ ..++..+...+...|++++|..+++.
T Consensus 169 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 248 (338)
T 3ro2_A 169 NLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK 248 (338)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 531 1 235788889999999999999999999876311 112 23677888889999999999999998
Q ss_pred HHhcCCccCC----CchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhc
Q 046257 607 MVNEHHIYPT----MEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAAT 682 (838)
Q Consensus 607 m~~~~~~~p~----~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~ 682 (838)
..+...-.++ ...+..+..+|.+.|++++|.+.+++.- ....-..-.+.....+..++.+|...
T Consensus 249 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~------------~~~~~~~~~~~~~~~~~~la~~~~~~ 316 (338)
T 3ro2_A 249 TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL------------AIAQELKDRIGEGRACWSLGNAYTAL 316 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH------------HHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH------------HHHHhcCCcHHHHHHHHHHHHHHHHc
Confidence 7643211111 4467788899999999999999998761 00000000111245788999999999
Q ss_pred CCchHHHHHHHHHhhC
Q 046257 683 GHWQERARVRKLMNDR 698 (838)
Q Consensus 683 g~~~~a~~~~~~m~~~ 698 (838)
|++++|...+++..+.
T Consensus 317 g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 317 GNHDQAMHFAEKHLEI 332 (338)
T ss_dssp TCHHHHHHHHHHHHHC
T ss_pred CChHHHHHHHHHHHHH
Confidence 9999999999988753
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.11 E-value=1.4e-09 Score=118.85 Aligned_cols=128 Identities=13% Similarity=0.071 Sum_probs=98.4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-CC----h
Q 046257 516 CVSSALVTMYSKKGNIESASEVFKRQRK-----RD----LVSWNSMICGYAQHGHTKKALEVFKEMRRQDLE-FD----G 581 (838)
Q Consensus 516 ~~~~~li~~y~k~g~~~~A~~~f~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-pd----~ 581 (838)
..+..+...|...|++++|.+.|++... .+ ..+|..+...|...|++++|++.|++..+.... .+ .
T Consensus 224 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 303 (411)
T 4a1s_A 224 RACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEA 303 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 3556677789999999999999987651 12 237888999999999999999999988763111 11 3
Q ss_pred hHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCC----CchHHHHHHHHHhcCCHHHHHHHHhhC
Q 046257 582 ITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPT----MEHYSCMVDLYSRAGMLEKAMDIINRM 643 (838)
Q Consensus 582 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~y~~lv~~l~r~G~~~~A~~~~~~m 643 (838)
.++..+...+...|++++|.++++.......-.++ ...+..+..+|.+.|++++|.+.+++.
T Consensus 304 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 369 (411)
T 4a1s_A 304 QSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQH 369 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 56778888999999999999999987643211111 336778899999999999999999976
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.09 E-value=3.8e-10 Score=122.95 Aligned_cols=263 Identities=13% Similarity=0.090 Sum_probs=195.7
Q ss_pred hhHHHHHHHHcCCHHHHHHHHHhcCC--C-C----cchHHHHHHHHHhcCCchHHHHHHHHhhcC----CCCCC-HhhHH
Q 046257 416 GTALLNAYVKKGILDEAAKVFELIDE--K-D----IVAWSAMLAGYAQIGDTEGAVKIYRQLTSE----GVKPN-EFTFS 483 (838)
Q Consensus 416 ~~~Li~~y~~~g~~~~A~~~f~~~~~--~-~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~t~~ 483 (838)
+..+...+.+.|++++|...|++..+ + + ...|..+...|...|++++|+..|++.... +-.|. ..++.
T Consensus 12 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 91 (406)
T 3sf4_A 12 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASG 91 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 34567788899999999999987753 2 2 246888899999999999999999886542 22222 23444
Q ss_pred HHHHHhcCChhhHHHHHHHHHHHHHhcCC-C----chhHHHHHHHHHHhcCC--------------------HHHHHHHH
Q 046257 484 SVINACTAPSAAVEQGKQFHACSIKAKLN-N----ALCVSSALVTMYSKKGN--------------------IESASEVF 538 (838)
Q Consensus 484 ~ll~a~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~li~~y~k~g~--------------------~~~A~~~f 538 (838)
.+-..+... +.++.+...+..+.+.... . ...++..+...|...|+ +++|.+.+
T Consensus 92 ~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 170 (406)
T 3sf4_A 92 NLGNTLKVL-GNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFY 170 (406)
T ss_dssp HHHHHHHHT-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHc-CCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 555556666 8899998888776653211 1 24477788899999999 99999888
Q ss_pred HhcC-----CC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCC----hhHHHHHHHHHhccCCHHHHHHHH
Q 046257 539 KRQR-----KR----DLVSWNSMICGYAQHGHTKKALEVFKEMRRQDL-EFD----GITFIGVITACTHAGLVDEGQQYF 604 (838)
Q Consensus 539 ~~~~-----~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~pd----~~t~~~ll~a~~~~g~~~~a~~~~ 604 (838)
++.. .. ...+|..+...|...|++++|++.|++..+... .++ ..++..+...+...|++++|..++
T Consensus 171 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 250 (406)
T 3sf4_A 171 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYY 250 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 7653 11 235788899999999999999999999876311 122 237888888999999999999999
Q ss_pred HHHHhcCCccCC----CchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccC------CCCchhHHH
Q 046257 605 DIMVNEHHIYPT----MEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQ------PHDSAIYVL 674 (838)
Q Consensus 605 ~~m~~~~~~~p~----~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~------P~~~~~y~~ 674 (838)
+.......-.++ ...+..+...|.+.|++++|.+.+++. +++. |.....+..
T Consensus 251 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a------------------~~~~~~~~~~~~~~~~~~~ 312 (406)
T 3sf4_A 251 KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH------------------LAIAQELNDRIGEGRACWS 312 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH------------------HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHH------------------HHHHHhcCCcHHHHHHHHH
Confidence 987643211111 446778899999999999999999876 2221 112567889
Q ss_pred HHHHHHhcCCchHHHHHHHHHhh
Q 046257 675 LSNMYAATGHWQERARVRKLMND 697 (838)
Q Consensus 675 l~~~y~~~g~~~~a~~~~~~m~~ 697 (838)
++.+|...|++++|.+.+++..+
T Consensus 313 la~~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 313 LGNAYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999988754
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.06 E-value=1.7e-09 Score=113.92 Aligned_cols=267 Identities=13% Similarity=0.038 Sum_probs=166.7
Q ss_pred HHHHHHHHcCCChHHHHHHHHhccc-CC-C----eeehHHHHHHHHHcCChHHHHHHHHHhhhcCCCCCcccHHHHHhhC
Q 046257 319 TGLMVAYSKCGKMEDASKIFSMMRE-MK-D----VVSWTAMISGHLQNGAIDLAVNFFCQMTREGVRPNGFTYSIILTAQ 392 (838)
Q Consensus 319 ~~Li~~y~~~g~~~~A~~~f~~~~~-~~-~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~ 392 (838)
......+...|++++|...|++..+ .| + ...|..+...|...|++++|++.+++........+.
T Consensus 9 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---------- 78 (338)
T 3ro2_A 9 ALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGD---------- 78 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC----------
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccc----------
Confidence 3445566677777777777776643 22 2 234566666777777777777777766542100000
Q ss_pred CCCChhHHHHHHHHhhccCCcchhhHHHHHHHHcCCHHHHHHHHHhcCC-----CC----cchHHHHHHHHHhcCC----
Q 046257 393 PAVSPFQVHAHIIKTNYEKSFSVGTALLNAYVKKGILDEAAKVFELIDE-----KD----IVAWSAMLAGYAQIGD---- 459 (838)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~-----~~----~~~~~~li~~~~~~g~---- 459 (838)
......++..+...|...|++++|...|++..+ .+ ..+|..+...|...|+
T Consensus 79 ----------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 142 (338)
T 3ro2_A 79 ----------------QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGC 142 (338)
T ss_dssp ----------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSS
T ss_pred ----------------cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCccccc
Confidence 000123345556666666666666666655432 11 1245555555555555
Q ss_pred ----------------chHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCChhhHHHHHHHHHHHHHhcC-CCchhHHHHHH
Q 046257 460 ----------------TEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFHACSIKAKL-NNALCVSSALV 522 (838)
Q Consensus 460 ----------------~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~li 522 (838)
+++|++.+++.... ..+.+. .....++..+.
T Consensus 143 ~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~--------------------------------~~~~~~~~~~~~~~~~l~ 190 (338)
T 3ro2_A 143 PGPQDTGEFPEDVRNALQAAVDLYEENLSL--------------------------------VTALGDRAAQGRAFGNLG 190 (338)
T ss_dssp SSCC----CCHHHHHHHHHHHHHHHHHHHH--------------------------------HHHHTCHHHHHHHHHHHH
T ss_pred chhhhhhhhhhhHHHHHHHHHHHHHHHHHH--------------------------------HHhcCCHHHHHHHHHHHH
Confidence 44444444333210 000111 11234566778
Q ss_pred HHHHhcCCHHHHHHHHHhcCC-----CC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-CC----hhHHHHHH
Q 046257 523 TMYSKKGNIESASEVFKRQRK-----RD----LVSWNSMICGYAQHGHTKKALEVFKEMRRQDLE-FD----GITFIGVI 588 (838)
Q Consensus 523 ~~y~k~g~~~~A~~~f~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-pd----~~t~~~ll 588 (838)
..|...|++++|.+.|++... ++ ..+|..+...|...|++++|++.|++..+.... ++ ..++..+.
T Consensus 191 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 270 (338)
T 3ro2_A 191 NTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLG 270 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHH
Confidence 889999999999999987651 12 247888999999999999999999998763111 12 35677788
Q ss_pred HHHhccCCHHHHHHHHHHHHhcCCccCC----CchHHHHHHHHHhcCCHHHHHHHHhhC
Q 046257 589 TACTHAGLVDEGQQYFDIMVNEHHIYPT----MEHYSCMVDLYSRAGMLEKAMDIINRM 643 (838)
Q Consensus 589 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~y~~lv~~l~r~G~~~~A~~~~~~m 643 (838)
..+...|++++|..+++.......-.++ ...+..+...|.+.|++++|.+.+++.
T Consensus 271 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 329 (338)
T 3ro2_A 271 NTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 329 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 8899999999999999987643211111 336778899999999999999999876
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.06 E-value=2.6e-09 Score=106.16 Aligned_cols=149 Identities=14% Similarity=0.046 Sum_probs=125.4
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcC---C-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh-hHHHHHH
Q 046257 514 ALCVSSALVTMYSKKGNIESASEVFKRQR---K-RDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDG-ITFIGVI 588 (838)
Q Consensus 514 ~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll 588 (838)
|+..+..+...|.+.|++++|.+.|++.. + ++...|..+...|...|++++|++.|++..+ ..|+. .++..+.
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~ 83 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK--KNYNLANAYIGKS 83 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH--hCcchHHHHHHHH
Confidence 45666677788999999999999998765 3 7888888899999999999999999999998 67774 5788888
Q ss_pred HHHhccCCHHHHHHHHHHHHhcCCccCC-C-------chHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 046257 589 TACTHAGLVDEGQQYFDIMVNEHHIYPT-M-------EHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACR 660 (838)
Q Consensus 589 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~-------~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~ 660 (838)
.++...|++++|...++...+. .|+ . ..|..+...+.+.|++++|.+.+++.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~a----------------- 143 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKA---VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHA----------------- 143 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-----------------
T ss_pred HHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHH-----------------
Confidence 9999999999999999998854 344 2 45778889999999999999999987
Q ss_pred HhccCCC--CchhHHHHHHHHHhcCCc
Q 046257 661 LISLQPH--DSAIYVLLSNMYAATGHW 685 (838)
Q Consensus 661 ~~~l~P~--~~~~y~~l~~~y~~~g~~ 685 (838)
++++|+ ++.++..++.+|...|+.
T Consensus 144 -l~~~p~~~~~~~~~~l~~~~~~~~~~ 169 (228)
T 4i17_A 144 -TDVTSKKWKTDALYSLGVLFYNNGAD 169 (228)
T ss_dssp -TTSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HhcCCCcccHHHHHHHHHHHHHHHHH
Confidence 677777 777788888888777776
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.05 E-value=3.8e-07 Score=104.51 Aligned_cols=204 Identities=10% Similarity=0.012 Sum_probs=96.2
Q ss_pred cchhhHHHHHHHHcCCHHHHH-HHHHhcCC---CCcchHHHHHHHHHhcCCchHHHHHHHHhhcCCC---------CCCH
Q 046257 413 FSVGTALLNAYVKKGILDEAA-KVFELIDE---KDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGV---------KPNE 479 (838)
Q Consensus 413 ~~~~~~Li~~y~~~g~~~~A~-~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---------~p~~ 479 (838)
..+|-..+..+...|+.++|. ++|+.... ++...|-..+...-+.|++++|.++|+++..... .|+.
T Consensus 343 ~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~ 422 (679)
T 4e6h_A 343 PEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTN 422 (679)
T ss_dssp HHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcc
Confidence 344445555556667777775 77765543 2344566666777777777777777777664210 0210
Q ss_pred hhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC----CHHHHHHHHHH
Q 046257 480 FTFSSVINACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQRKR----DLVSWNSMICG 555 (838)
Q Consensus 480 ~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~----~~~~~~~li~~ 555 (838)
. +....+. .....+|...++...+.|.++.|+++|++..+. ....|-..+..
T Consensus 423 ~----------------~~~~~~~--------~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~l 478 (679)
T 4e6h_A 423 E----------------SAINQLK--------SKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYI 478 (679)
T ss_dssp H----------------HHHHHHH--------HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHH
T ss_pred h----------------hhhhhhc--------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 0 0000000 001224444455555555556666665554311 11122111111
Q ss_pred HHHc-CChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccC--CCchHHHHHHHHHhcC
Q 046257 556 YAQH-GHTKKALEVFKEMRRQDLEFD-GITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYP--TMEHYSCMVDLYSRAG 631 (838)
Q Consensus 556 ~~~~-g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p--~~~~y~~lv~~l~r~G 631 (838)
-.+. ++.+.|..+|+..++. .|+ ...+...+......|+.+.|+.+|+..+... ..+ ....|...++.-.+.|
T Consensus 479 E~~~~~d~e~Ar~ife~~Lk~--~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~-~~~~~~~~lw~~~~~fE~~~G 555 (679)
T 4e6h_A 479 EYHISKDTKTACKVLELGLKY--FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKI-SDSHLLKMIFQKVIFFESKVG 555 (679)
T ss_dssp HHTTTSCCHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTS-SSTTHHHHHHHHHHHHHHHTC
T ss_pred HHHhCCCHHHHHHHHHHHHHH--CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHcC
Confidence 1122 3355666666655553 332 2333444444445556666666666554221 000 1234555555555566
Q ss_pred CHHHHHHHHhhC
Q 046257 632 MLEKAMDIINRM 643 (838)
Q Consensus 632 ~~~~A~~~~~~m 643 (838)
..+.+.++.+++
T Consensus 556 ~~~~~~~v~~R~ 567 (679)
T 4e6h_A 556 SLNSVRTLEKRF 567 (679)
T ss_dssp CSHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 666666555554
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.05 E-value=2.4e-10 Score=119.48 Aligned_cols=238 Identities=9% Similarity=0.084 Sum_probs=144.9
Q ss_pred cchhhHHHHHHHHcCCHHHHHHHHHhcCC--------C---CcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhh
Q 046257 413 FSVGTALLNAYVKKGILDEAAKVFELIDE--------K---DIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFT 481 (838)
Q Consensus 413 ~~~~~~Li~~y~~~g~~~~A~~~f~~~~~--------~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 481 (838)
..++..+...|...|++++|...|+++.+ . ....|..+...|...|++++|++.|++.....-
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~------ 100 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIRE------ 100 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH------
Confidence 34556677777788888888887776643 1 234566777777777788777777776653200
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC----------C-CHHHHH
Q 046257 482 FSSVINACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQRK----------R-DLVSWN 550 (838)
Q Consensus 482 ~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~----------~-~~~~~~ 550 (838)
.......+.....+..+...|...|++++|.+.|++... + ....|.
T Consensus 101 -----------------------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 157 (311)
T 3nf1_A 101 -----------------------KTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLN 157 (311)
T ss_dssp -----------------------HHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred -----------------------HHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 000000011233455666778888888888887776541 1 235677
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHc------CCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHHHhcC------CccCCC
Q 046257 551 SMICGYAQHGHTKKALEVFKEMRRQ------DLEFD-GITFIGVITACTHAGLVDEGQQYFDIMVNEH------HIYPTM 617 (838)
Q Consensus 551 ~li~~~~~~g~~~~A~~l~~~m~~~------g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~------~~~p~~ 617 (838)
.+...|...|++++|++.|+++.+. +-.|+ ..++..+...+...|++++|.++++.+.+.. ...+..
T Consensus 158 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 237 (311)
T 3nf1_A 158 NLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDEN 237 (311)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcch
Confidence 7888888888888888888888774 22333 2467777788888888888888888876421 112222
Q ss_pred c-hHHH------HHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHH
Q 046257 618 E-HYSC------MVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERAR 690 (838)
Q Consensus 618 ~-~y~~------lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~ 690 (838)
. .+.. +...+...+.+++|...+++. .+..|.++..+..++.+|...|++++|.+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~------------------~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 299 (311)
T 3nf1_A 238 KPIWMHAEEREECKGKQKDGTSFGEYGGWYKAC------------------KVDSPTVTTTLKNLGALYRRQGKFEAAET 299 (311)
T ss_dssp CCHHHHHHHHHHC-------CCSCCCC---------------------------CHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhc------------------CCCCchHHHHHHHHHHHHHHCCCHHHHHH
Confidence 2 2221 122233334444444444433 34567788889999999999999999999
Q ss_pred HHHHHhh
Q 046257 691 VRKLMND 697 (838)
Q Consensus 691 ~~~~m~~ 697 (838)
.+++..+
T Consensus 300 ~~~~al~ 306 (311)
T 3nf1_A 300 LEEAAMR 306 (311)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988754
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.04 E-value=3.4e-09 Score=118.02 Aligned_cols=178 Identities=8% Similarity=0.014 Sum_probs=151.1
Q ss_pred HHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCH-HHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 046257 496 VEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNI-ESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKE 571 (838)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~-~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 571 (838)
++.+.+.+....+. .+.+...+..+...|...|++ ++|.+.|++.. +.+...|..+...|...|++++|++.|++
T Consensus 84 ~~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34444444433322 234667778888889999999 99999999875 45688999999999999999999999999
Q ss_pred HHHcCCCCChhHHHHHHHHHhcc---------CCHHHHHHHHHHHHhcCCccCC-CchHHHHHHHHHhc--------CCH
Q 046257 572 MRRQDLEFDGITFIGVITACTHA---------GLVDEGQQYFDIMVNEHHIYPT-MEHYSCMVDLYSRA--------GML 633 (838)
Q Consensus 572 m~~~g~~pd~~t~~~ll~a~~~~---------g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~--------G~~ 633 (838)
..+ +.|+...+..+..++... |++++|.+.|+...+. .|+ ...|..+..+|.+. |++
T Consensus 163 al~--~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 163 ALT--HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM---DVLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHT--TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHh--hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 999 678888888999999999 9999999999999853 454 56788899999998 999
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCC---CCchhHHHHHHHHHhcCCchHHHHHHHHHhh
Q 046257 634 EKAMDIINRMPFAASATVWRTVLAACRLISLQP---HDSAIYVLLSNMYAATGHWQERARVRKLMND 697 (838)
Q Consensus 634 ~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P---~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~ 697 (838)
++|.+.+++. ++++| +++..|..++.+|...|++++|.+.+++..+
T Consensus 238 ~~A~~~~~~a------------------l~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 286 (474)
T 4abn_A 238 QQALSAYAQA------------------EKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAA 286 (474)
T ss_dssp HHHHHHHHHH------------------HHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH------------------HHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999987 78899 9999999999999999999999999999875
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.03 E-value=4.3e-09 Score=100.59 Aligned_cols=159 Identities=14% Similarity=0.198 Sum_probs=125.0
Q ss_pred CcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHH
Q 046257 443 DIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALV 522 (838)
Q Consensus 443 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 522 (838)
+...|..+...|.+.|++++|++.|++..+. .|+. ...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--~p~~-----------------------------------~~~~~~la 46 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--DPNN-----------------------------------VETLLKLG 46 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTC-----------------------------------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCC-----------------------------------HHHHHHHH
Confidence 4456788888888889999999888887652 3332 33444556
Q ss_pred HHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccCCHH
Q 046257 523 TMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITACTHAGLVD 598 (838)
Q Consensus 523 ~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~ 598 (838)
..|.+.|++++|...++... +.+...|..+...+...+++++|.+.+++... ..|+ ...+..+..++...|+++
T Consensus 47 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~--~~~~~~~~~~~lg~~~~~~g~~~ 124 (184)
T 3vtx_A 47 KTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIA--LNTVYADAYYKLGLVYDSMGEHD 124 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCccchHHHHHHHHHHHHhCCch
Confidence 67888899999988887764 45677888888888999999999999999888 4555 566778888889999999
Q ss_pred HHHHHHHHHHhcCCccC-CCchHHHHHHHHHhcCCHHHHHHHHhhC
Q 046257 599 EGQQYFDIMVNEHHIYP-TMEHYSCMVDLYSRAGMLEKAMDIINRM 643 (838)
Q Consensus 599 ~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~G~~~~A~~~~~~m 643 (838)
+|.+.|+...+. .| +...|..+..+|.+.|++++|.+.+++.
T Consensus 125 ~A~~~~~~~l~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 167 (184)
T 3vtx_A 125 KAIEAYEKTISI---KPGFIRAYQSIGLAYEGKGLRDEAVKYFKKA 167 (184)
T ss_dssp HHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHh---cchhhhHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999999988743 34 4567888889999999999999999876
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.02 E-value=3.4e-09 Score=114.78 Aligned_cols=163 Identities=10% Similarity=0.114 Sum_probs=126.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcC-----CCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHc----CCCCC-h
Q 046257 516 CVSSALVTMYSKKGNIESASEVFKRQR-----KRD----LVSWNSMICGYAQHGHTKKALEVFKEMRRQ----DLEFD-G 581 (838)
Q Consensus 516 ~~~~~li~~y~k~g~~~~A~~~f~~~~-----~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~pd-~ 581 (838)
.+++.+...|...|++++|.+.|++.. .++ ..+|+.+...|...|++++|++.|++..+. +..|+ .
T Consensus 185 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 264 (383)
T 3ulq_A 185 QCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLP 264 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHH
Confidence 456677888999999999999988765 122 247888999999999999999999998872 33244 4
Q ss_pred hHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCC---CchHHHHHHHHHhcCC---HHHHHHHHhhCCCCCCHHHHHHH
Q 046257 582 ITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPT---MEHYSCMVDLYSRAGM---LEKAMDIINRMPFAASATVWRTV 655 (838)
Q Consensus 582 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~y~~lv~~l~r~G~---~~~A~~~~~~m~~~~~~~~w~~l 655 (838)
.++..+...+...|++++|..+++...+...-.++ ...+..+..+|...|+ +++|.+++++....
T Consensus 265 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~--------- 335 (383)
T 3ulq_A 265 QAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLY--------- 335 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCH---------
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCH---------
Confidence 67888899999999999999999987643211112 2235667888899999 99999999987422
Q ss_pred HHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhh
Q 046257 656 LAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMND 697 (838)
Q Consensus 656 l~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~ 697 (838)
|.....+..|+.+|...|++++|...+++..+
T Consensus 336 ----------~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 336 ----------ADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp ----------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 22455678899999999999999999998754
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=98.98 E-value=2.5e-08 Score=104.25 Aligned_cols=162 Identities=7% Similarity=-0.029 Sum_probs=75.5
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCh-h-hHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 046257 146 SWTSLLSGYARNKMNDRVLELFHRMQVEGIKPNS-F-TFSTVLGVLADEGIVATAVQVHTMVIKNGGEVVTSVCNALISM 223 (838)
Q Consensus 146 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~-t~~~ll~~~~~~g~~~~a~~l~~~~~~~g~~~~~~~~~~li~~ 223 (838)
.|..++..+.+.|++++|..+|++..+. .|+. . .|..+...+.+.|++++|+.+|..+++.. +.+..+|......
T Consensus 101 ~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~ 177 (308)
T 2ond_A 101 LYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALM 177 (308)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 4444444444444444444444444431 2221 1 34444444444444444444444444432 1222223222222
Q ss_pred hH-cCCChhHHHHHHhcCCC---CCcchHHHHHHHHHhCCChHHHHHHHHHhhhCC-CCCC--hhhHHHHHHHHhccCcH
Q 046257 224 YL-KSKMVRDARAVFDGMED---RDSITWNSMVAGYVTNELHMEAFETFNNMGLAG-AELT--RSTFVSVIKLCATTKEL 296 (838)
Q Consensus 224 y~-~~g~~~~A~~~f~~m~~---~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~--~~t~~~ll~~~~~~~~~ 296 (838)
.. ..|+.++|+.+|+...+ .+...|..++..+.+.|++++|..+|++..... +.|+ ...|...+....+.|+.
T Consensus 178 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~ 257 (308)
T 2ond_A 178 EYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDL 257 (308)
T ss_dssp HHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 11 13555555555544322 234455555555556666666666666665542 3332 23445555555556666
Q ss_pred HHHHHHHHHHHHhC
Q 046257 297 RLARQLHSQVLKNG 310 (838)
Q Consensus 297 ~~a~~~~~~~~~~g 310 (838)
+.+..++..+.+..
T Consensus 258 ~~a~~~~~~a~~~~ 271 (308)
T 2ond_A 258 ASILKVEKRRFTAF 271 (308)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHc
Confidence 66666666666553
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.93 E-value=2.7e-08 Score=107.37 Aligned_cols=228 Identities=11% Similarity=0.094 Sum_probs=165.5
Q ss_pred HHHHHHHcCCHHHHHHHHHhcCC-----CC----cchHHHHHHHHHhcCCchHHHHHHHHhhcCCC-CCC-HhhHHHHHH
Q 046257 419 LLNAYVKKGILDEAAKVFELIDE-----KD----IVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGV-KPN-EFTFSSVIN 487 (838)
Q Consensus 419 Li~~y~~~g~~~~A~~~f~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~-~~t~~~ll~ 487 (838)
....+...|++++|...|++..+ ++ ...+..+...|...|++++|+..+.+....-. .++ ..
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~------- 179 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSI------- 179 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHH-------
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchh-------
Confidence 34456788999999999987653 12 24677888888999999999988887654210 000 00
Q ss_pred HhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC----HHHHHHHHHHHHH
Q 046257 488 ACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQRK-----RD----LVSWNSMICGYAQ 558 (838)
Q Consensus 488 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~-----~~----~~~~~~li~~~~~ 558 (838)
....+++.+...|...|++++|.+.|++... ++ ..+++.+...|..
T Consensus 180 -------------------------~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~ 234 (378)
T 3q15_A 180 -------------------------RTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDR 234 (378)
T ss_dssp -------------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred -------------------------hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 0123455677788999999999998876541 22 3578889999999
Q ss_pred cCChHHHHHHHHHHHHcC---CCCC-hhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCC---chHHHHHHHHHhcC
Q 046257 559 HGHTKKALEVFKEMRRQD---LEFD-GITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTM---EHYSCMVDLYSRAG 631 (838)
Q Consensus 559 ~g~~~~A~~l~~~m~~~g---~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~---~~y~~lv~~l~r~G 631 (838)
.|++++|++.|++..+.. -.|+ ..++..+...+.+.|++++|..+++...+...-.++. ..+..+..++...|
T Consensus 235 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~ 314 (378)
T 3q15_A 235 SGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETV 314 (378)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSC
T ss_pred CCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCC
Confidence 999999999999988720 1233 5678888889999999999999999987543332232 23555667777888
Q ss_pred C---HHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhh
Q 046257 632 M---LEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMND 697 (838)
Q Consensus 632 ~---~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~ 697 (838)
+ +++|.+.+++... .|.....+..++.+|...|++++|...+++..+
T Consensus 315 ~~~~~~~al~~~~~~~~-------------------~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 315 DERKIHDLLSYFEKKNL-------------------HAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp CHHHHHHHHHHHHHTTC-------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhCCC-------------------hhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8 8999999998632 122345677899999999999999999887753
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.90 E-value=1.1e-09 Score=114.27 Aligned_cols=167 Identities=10% Similarity=0.029 Sum_probs=122.0
Q ss_pred CcccHHHHHHHHHccCChHHHHHHHHHHHHc-------CCCCCcccHHHHHHHhccCCChhhHHHHHHHHHHh------C
Q 046257 42 NFVEYNRLLFEYCRDSLHQEALNLFLGIRRL-------GLPLFGSTLSSVLKTCGCLFDHVFGRQVHCECVKS------G 108 (838)
Q Consensus 42 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-------g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------g 108 (838)
+...|..+...+...|++++|+..|+++.+. ..+.....+..+...+...|+++.|...+..+++. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3457888899999999999999999998863 22333456777888888899999999988887764 2
Q ss_pred C-CCChhHHHHHHHHHHhCCChHHHHHHHccCCC----------C-CcchHHHHHHHHHhCCCchHHHHHHHHHHHC---
Q 046257 109 F-ARDVNVSTSLVDLYMRTNNVEDGRRVFDDMNE----------S-NVVSWTSLLSGYARNKMNDRVLELFHRMQVE--- 173 (838)
Q Consensus 109 ~-~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~----------~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--- 173 (838)
. +....++..+...|...|++++|...|++..+ + ...+|..+...|...|++++|++.|++..+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1 22345677788888888888888888876542 1 2345777788888888888888888887653
Q ss_pred ---CCCC-ChhhHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 046257 174 ---GIKP-NSFTFSTVLGVLADEGIVATAVQVHTMVIKN 208 (838)
Q Consensus 174 ---g~~p-~~~t~~~ll~~~~~~g~~~~a~~l~~~~~~~ 208 (838)
+..| ...++..+...+...|++++|...+..+++.
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 224 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTR 224 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 1122 2345667777777888888888888777753
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=2e-09 Score=99.11 Aligned_cols=141 Identities=13% Similarity=0.099 Sum_probs=117.6
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccCC
Q 046257 521 LVTMYSKKGNIESASEVFKRQRKR---DLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITACTHAGL 596 (838)
Q Consensus 521 li~~y~k~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~ 596 (838)
|..+|...|++++|...++...+. +...|..+...|.+.|++++|++.|++.++ +.|+ ..+|..+..++...|+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN--VQERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCc
Confidence 455677889999999999887743 345677889999999999999999999999 6776 5678889999999999
Q ss_pred HHHHHHHHHHHHhcCCccCC-CchHHHHHHHHHhcCCHHHHHH-HHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHH
Q 046257 597 VDEGQQYFDIMVNEHHIYPT-MEHYSCMVDLYSRAGMLEKAMD-IINRMPFAASATVWRTVLAACRLISLQPHDSAIYVL 674 (838)
Q Consensus 597 ~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~G~~~~A~~-~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~ 674 (838)
+++|...|+...+ +.|+ ...|..+..+|.+.|++++|.+ ++++. ++++|+++.+|.+
T Consensus 81 ~~~A~~~~~~al~---~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~a------------------l~l~P~~~~~~~l 139 (150)
T 4ga2_A 81 TDKAVECYRRSVE---LNPTQKDLVLKIAELLCKNDVTDGRAKYWVERA------------------AKLFPGSPAVYKL 139 (150)
T ss_dssp HHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHH------------------HHHSTTCHHHHHH
T ss_pred hHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH------------------HHhCcCCHHHHHH
Confidence 9999999999884 3564 5678889999999999987665 46776 7899999999999
Q ss_pred HHHHHHhcCC
Q 046257 675 LSNMYAATGH 684 (838)
Q Consensus 675 l~~~y~~~g~ 684 (838)
.+.++...|+
T Consensus 140 ~~~ll~~~G~ 149 (150)
T 4ga2_A 140 KEQLLDCEGE 149 (150)
T ss_dssp HHHHHHTCCC
T ss_pred HHHHHHHhCc
Confidence 9999998886
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=98.89 E-value=2.9e-08 Score=94.29 Aligned_cols=159 Identities=16% Similarity=0.153 Sum_probs=123.5
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHH
Q 046257 445 VAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTM 524 (838)
Q Consensus 445 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 524 (838)
..|..+...+...|++++|++.|+++... .|+ +...+..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~-----------------------------------~~~~~~~~~~~ 51 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDA--DAF-----------------------------------DVDVALHLGIA 51 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCT--TSC-----------------------------------CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--Ccc-----------------------------------ChHHHHHHHHH
Confidence 34667778888899999999999887653 222 12234445566
Q ss_pred HHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHH
Q 046257 525 YSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGITFIGVITACTHAGLVDEGQ 601 (838)
Q Consensus 525 y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~ 601 (838)
|.+.|++++|.+.|+++. +.+...|..+...|...|++++|++.|+++.+.. +.+...+..+..++...|++++|.
T Consensus 52 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~ 130 (186)
T 3as5_A 52 YVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAI 130 (186)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHH
Confidence 788889999998888765 4567888888999999999999999999988852 334567788888889999999999
Q ss_pred HHHHHHHhcCCccCCCchHHHHHHHHHhcCCHHHHHHHHhhC
Q 046257 602 QYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDIINRM 643 (838)
Q Consensus 602 ~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~~m 643 (838)
.+++.+.+.. +.+...+..++..+.+.|++++|.+.++++
T Consensus 131 ~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 170 (186)
T 3as5_A 131 DSFKIALGLR--PNEGKVHRAIAFSYEQMGRHEEALPHFKKA 170 (186)
T ss_dssp HHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhcC--ccchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999887542 224567888889999999999999999876
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.87 E-value=1.4e-07 Score=101.96 Aligned_cols=229 Identities=11% Similarity=0.054 Sum_probs=153.2
Q ss_pred HHHHHHcCCChHHHHHHHHhccc----CCC----eeehHHHHHHHHHcCChHHHHHHHHHhhhcCCCCCcccHHHHHhhC
Q 046257 321 LMVAYSKCGKMEDASKIFSMMRE----MKD----VVSWTAMISGHLQNGAIDLAVNFFCQMTREGVRPNGFTYSIILTAQ 392 (838)
Q Consensus 321 Li~~y~~~g~~~~A~~~f~~~~~----~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~ 392 (838)
....+...|++++|...|++... .+| ..+|..+...|...|++++|+..+.+..+.-...+....
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~------- 181 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNI------- 181 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHH-------
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchH-------
Confidence 55677888999999999988753 122 246888889999999999999999988763111110000
Q ss_pred CCCChhHHHHHHHHhhccCCcchhhHHHHHHHHcCCHHHHHHHHHhcCC-----CC----cchHHHHHHHHHhcCCchHH
Q 046257 393 PAVSPFQVHAHIIKTNYEKSFSVGTALLNAYVKKGILDEAAKVFELIDE-----KD----IVAWSAMLAGYAQIGDTEGA 463 (838)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~-----~~----~~~~~~li~~~~~~g~~~~A 463 (838)
....+++.+...|...|++++|.+.|++..+ ++ ..+|..+...|...|++++|
T Consensus 182 ------------------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A 243 (383)
T 3ulq_A 182 ------------------RLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDA 243 (383)
T ss_dssp ------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ------------------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHH
Confidence 0012345678889999999999998886642 11 13678888889999999999
Q ss_pred HHHHHHhhcCCCCCCHhhHHHHHHHhcCChhhHHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 046257 464 VKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFHACSIKAKL-NNALCVSSALVTMYSKKGNIESASEVFKRQR 542 (838)
Q Consensus 464 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~ 542 (838)
++.|++..... .+.+. +....++..+...|.+.|++++|.+.|++..
T Consensus 244 ~~~~~~al~~~--------------------------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 291 (383)
T 3ulq_A 244 IPYFKRAIAVF--------------------------------EESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGM 291 (383)
T ss_dssp HHHHHHHHHHH--------------------------------HHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--------------------------------HhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99888776510 00011 1123344456667778888888888777654
Q ss_pred C-----CC---HHHHHHHHHHHHHcCC---hHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 046257 543 K-----RD---LVSWNSMICGYAQHGH---TKKALEVFKEMRRQDLEFD-GITFIGVITACTHAGLVDEGQQYFDIMVN 609 (838)
Q Consensus 543 ~-----~~---~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 609 (838)
. .+ ...++.+...|...|+ .++|+.++++. +..|+ ...+..+...+...|++++|..+|+...+
T Consensus 292 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 292 AYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1 12 2235667777777787 67777777665 33443 34566777788888888888888887653
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.87 E-value=4e-08 Score=97.50 Aligned_cols=208 Identities=12% Similarity=0.080 Sum_probs=135.3
Q ss_pred CCcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHH
Q 046257 442 KDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFHACSIKAKLNNALCVSSAL 521 (838)
Q Consensus 442 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 521 (838)
.|...|......|.+.|++++|++.|++..+....++...+..+-.++... +..+.+...+...++.. +.+...+..+
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~al~~~-p~~~~~~~~l 82 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNI-KKYKEAADYFDIAIKKN-YNLANAYIGK 82 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTT-CSHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHh-hcHHHHHHHHHHHHHhC-cchHHHHHHH
Confidence 355678888899999999999999999988754335666655555555555 77777777777776644 2255666667
Q ss_pred HHHHHhcCCHHHHHHHHHhcC---CCCH-------HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC--h-hHHHHHH
Q 046257 522 VTMYSKKGNIESASEVFKRQR---KRDL-------VSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD--G-ITFIGVI 588 (838)
Q Consensus 522 i~~y~k~g~~~~A~~~f~~~~---~~~~-------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd--~-~t~~~ll 588 (838)
...|.+.|++++|.+.|++.. +.+. ..|..+...+...|++++|++.|++..+ +.|+ . ..+..+.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD--VTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SSCHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh--cCCCcccHHHHHHHH
Confidence 777777777777777777654 2334 3466666777777777777777777776 4565 2 3444555
Q ss_pred HHHhccCCHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCC
Q 046257 589 TACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHD 668 (838)
Q Consensus 589 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~ 668 (838)
.++. ..+..+++.+.... ..+...|... .....|.+++|.+.+++. ++++|++
T Consensus 161 ~~~~-----~~~~~~~~~a~~~~--~~~~~~~~~~--~~~~~~~~~~A~~~~~~a------------------~~l~p~~ 213 (228)
T 4i17_A 161 VLFY-----NNGADVLRKATPLA--SSNKEKYASE--KAKADAAFKKAVDYLGEA------------------VTLSPNR 213 (228)
T ss_dssp HHHH-----HHHHHHHHHHGGGT--TTCHHHHHHH--HHHHHHHHHHHHHHHHHH------------------HHHCTTC
T ss_pred HHHH-----HHHHHHHHHHHhcc--cCCHHHHHHH--HHHHHHHHHHHHHHHHHH------------------hhcCCCC
Confidence 5553 33444445544211 1122223222 233445568888888876 7899999
Q ss_pred chhHHHHHHHHH
Q 046257 669 SAIYVLLSNMYA 680 (838)
Q Consensus 669 ~~~y~~l~~~y~ 680 (838)
+.+...|..+..
T Consensus 214 ~~~~~~l~~i~~ 225 (228)
T 4i17_A 214 TEIKQMQDQVKA 225 (228)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH
Confidence 988888877654
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.85 E-value=6.3e-09 Score=106.68 Aligned_cols=184 Identities=13% Similarity=0.196 Sum_probs=134.7
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcC-----------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc------C
Q 046257 514 ALCVSSALVTMYSKKGNIESASEVFKRQR-----------KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQ------D 576 (838)
Q Consensus 514 ~~~~~~~li~~y~k~g~~~~A~~~f~~~~-----------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g 576 (838)
...++..+...|...|++++|...|++.. .....+|..+...|...|++++|++.|++..+. .
T Consensus 42 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 121 (283)
T 3edt_B 42 VATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 121 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCC
Confidence 34566677888999999999999887654 113467888999999999999999999998874 1
Q ss_pred CCCC-hhHHHHHHHHHhccCCHHHHHHHHHHHHhcC-----CccC-CCchHHHHHHHHHhcCCHHHHHHHHhhCC-----
Q 046257 577 LEFD-GITFIGVITACTHAGLVDEGQQYFDIMVNEH-----HIYP-TMEHYSCMVDLYSRAGMLEKAMDIINRMP----- 644 (838)
Q Consensus 577 ~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-----~~~p-~~~~y~~lv~~l~r~G~~~~A~~~~~~m~----- 644 (838)
-.|+ ..++..+...+...|++++|..+++.+.+.. +-.| ....+..+..+|.+.|++++|.+.++++-
T Consensus 122 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~ 201 (283)
T 3edt_B 122 FHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHE 201 (283)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1233 4578888889999999999999999887431 1122 24567888999999999999999998752
Q ss_pred -----CCCC-HHHHHHHHHHHH--------------------HhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhh
Q 046257 645 -----FAAS-ATVWRTVLAACR--------------------LISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMND 697 (838)
Q Consensus 645 -----~~~~-~~~w~~ll~~c~--------------------~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~ 697 (838)
..+. ...|..+-.... +....|..+..+..|+.+|...|++++|..++++..+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 202 KEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred hcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1121 123332222111 1123456677899999999999999999999988754
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.84 E-value=7.4e-08 Score=97.83 Aligned_cols=185 Identities=12% Similarity=0.056 Sum_probs=144.4
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcC--CC-C---HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC----hhH
Q 046257 514 ALCVSSALVTMYSKKGNIESASEVFKRQR--KR-D---LVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD----GIT 583 (838)
Q Consensus 514 ~~~~~~~li~~y~k~g~~~~A~~~f~~~~--~~-~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd----~~t 583 (838)
+...+-.+...+.+.|++++|...|+++. .| + ...|..+...|.+.|++++|+..|++..+. .|+ ...
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a 91 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQI--YQIDPRVPQA 91 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH--CCCCchhHHH
Confidence 34455556677889999999999999886 23 3 567888999999999999999999999984 453 235
Q ss_pred HHHHHHHHhc--------cCCHHHHHHHHHHHHhcCCccCCC-chH-----------------HHHHHHHHhcCCHHHHH
Q 046257 584 FIGVITACTH--------AGLVDEGQQYFDIMVNEHHIYPTM-EHY-----------------SCMVDLYSRAGMLEKAM 637 (838)
Q Consensus 584 ~~~ll~a~~~--------~g~~~~a~~~~~~m~~~~~~~p~~-~~y-----------------~~lv~~l~r~G~~~~A~ 637 (838)
+..+..++.. .|++++|...|+..++.+ |+. ... ..+...|.+.|++++|.
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 168 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY---PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAA 168 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC---TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC---cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHH
Confidence 6666777777 899999999999998654 432 333 45688899999999999
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHHhccCCCC---chhHHHHHHHHHhc----------CCchHHHHHHHHHhhCCCccCC
Q 046257 638 DIINRMPFAASATVWRTVLAACRLISLQPHD---SAIYVLLSNMYAAT----------GHWQERARVRKLMNDRKVKKEA 704 (838)
Q Consensus 638 ~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~---~~~y~~l~~~y~~~----------g~~~~a~~~~~~m~~~g~~~~~ 704 (838)
+.++++ ++..|++ +..+..++.+|... |++++|...+++..+..
T Consensus 169 ~~~~~~------------------l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~----- 225 (261)
T 3qky_A 169 VTYEAV------------------FDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF----- 225 (261)
T ss_dssp HHHHHH------------------HHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHH------------------HHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC-----
Confidence 999987 6677764 45888999999977 99999999999987532
Q ss_pred ceeEEEECCEEEEEeeCCCCCCChHHHHHHHHHHHHHHHH
Q 046257 705 GYSWIEVKNKTYSFLAGDISHPQSNQIYSKLEELSTRLKD 744 (838)
Q Consensus 705 ~~s~i~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~~ 744 (838)
..+|........+.++...+.+
T Consensus 226 ------------------p~~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 226 ------------------PDSPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp ------------------TTCTHHHHHHHHHHHHHHHHHH
T ss_pred ------------------CCChHHHHHHHHHHHHHHHHHH
Confidence 2456667777777777776665
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=98.84 E-value=5.3e-07 Score=96.89 Aligned_cols=233 Identities=11% Similarity=0.014 Sum_probs=153.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHhcCC-----CCc----chHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHH
Q 046257 418 ALLNAYVKKGILDEAAKVFELIDE-----KDI----VAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINA 488 (838)
Q Consensus 418 ~Li~~y~~~g~~~~A~~~f~~~~~-----~~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 488 (838)
.+...|...|++++|...+++... .+. .+++.+...+...|++++|++.+++......
T Consensus 58 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~------------- 124 (373)
T 1hz4_A 58 VLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLIN------------- 124 (373)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH-------------
Confidence 455566677777777777765532 111 2355677778888999999888887654210
Q ss_pred hcCChhhHHHHHHHHHHHHHhcCC--C-chhHHHHHHHHHHhcCCHHHHHHHHHhcC--CC------CHHHHHHHHHHHH
Q 046257 489 CTAPSAAVEQGKQFHACSIKAKLN--N-ALCVSSALVTMYSKKGNIESASEVFKRQR--KR------DLVSWNSMICGYA 557 (838)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~li~~y~k~g~~~~A~~~f~~~~--~~------~~~~~~~li~~~~ 557 (838)
+.+.. + ....+..+...|...|++++|...+++.. .+ ...+|..+...+.
T Consensus 125 -------------------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 185 (373)
T 1hz4_A 125 -------------------EQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSL 185 (373)
T ss_dssp -------------------HTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHH
T ss_pred -------------------HhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHH
Confidence 00000 1 12233446667888999999999887653 11 2356788888999
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCh-hHHH-----HHHHHHhccCCHHHHHHHHHHHHhcCCccCCC-----chHHHHHHH
Q 046257 558 QHGHTKKALEVFKEMRRQDLEFDG-ITFI-----GVITACTHAGLVDEGQQYFDIMVNEHHIYPTM-----EHYSCMVDL 626 (838)
Q Consensus 558 ~~g~~~~A~~l~~~m~~~g~~pd~-~t~~-----~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-----~~y~~lv~~ 626 (838)
..|++++|...+++.....-.++. ..+. ..+..+...|+.++|..+++..... .|.. ..+..+..+
T Consensus 186 ~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~la~~ 262 (373)
T 1hz4_A 186 ARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKP---EFANNHFLQGQWRNIARA 262 (373)
T ss_dssp HHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCC---CCTTCGGGHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCC---CCCcchhhHHHHHHHHHH
Confidence 999999999999998864222221 1222 2334467899999999999987632 2221 135677889
Q ss_pred HHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhh
Q 046257 627 YSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMND 697 (838)
Q Consensus 627 l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~ 697 (838)
+...|++++|.+.+++.- ....-....+.....+..++.+|...|+.++|...++....
T Consensus 263 ~~~~g~~~~A~~~l~~a~------------~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 263 QILLGEFEPAEIVLEELN------------ENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHTTCHHHHHHHHHHHH------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHH------------HHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 999999999999998751 00000000011123677889999999999999999887754
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.82 E-value=5.7e-08 Score=86.58 Aligned_cols=129 Identities=17% Similarity=0.327 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCCchHHHHHHHH
Q 046257 548 SWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLY 627 (838)
Q Consensus 548 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l 627 (838)
.|..+...|...|++++|+++|+++.+.+ +.+..++..+...+...|++++|..+++.+.+.. +.+...+..+...+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC--CCchHHHHHHHHHH
Confidence 46677777788888888888888887742 2235566677777778888888888888776432 22345667778888
Q ss_pred HhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhh
Q 046257 628 SRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMND 697 (838)
Q Consensus 628 ~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~ 697 (838)
.+.|++++|.+.++++ ++..|+++..+..++.+|...|++++|...++.+.+
T Consensus 80 ~~~~~~~~A~~~~~~~------------------~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKA------------------LELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp HTTTCHHHHHHHHHHH------------------HHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHH------------------HHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 8888888888888876 566777788888888888888888888888887754
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=4.6e-08 Score=113.49 Aligned_cols=131 Identities=15% Similarity=0.187 Sum_probs=119.7
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCC-CchHHH
Q 046257 545 DLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPT-MEHYSC 622 (838)
Q Consensus 545 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~ 622 (838)
+..+|+.|...|.+.|++++|++.|++.++ +.|+ ..++..+..++.+.|++++|.+.|++.++ +.|+ ...|..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~--l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~---l~P~~~~a~~n 82 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR---ISPTFADAYSN 82 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHH
Confidence 467899999999999999999999999999 6787 56899999999999999999999999884 4565 568899
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 046257 623 MVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMNDR 698 (838)
Q Consensus 623 lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~~ 698 (838)
+..+|.+.|++++|++.+++. ++++|+++.+|..|+.+|...|++++|.+.+++..+.
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kA------------------l~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l 140 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRA------------------IQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKL 140 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH------------------HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHH------------------HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999999987 8999999999999999999999999999999988763
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.75 E-value=2.6e-07 Score=95.58 Aligned_cols=207 Identities=11% Similarity=-0.023 Sum_probs=143.0
Q ss_pred CHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCChhhHHHHHHHHHHHH
Q 046257 428 ILDEAAKVFELIDEKDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFHACSI 507 (838)
Q Consensus 428 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~ 507 (838)
++++|...|+.. ...|...|++++|++.|.+....... . ++..
T Consensus 32 ~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~~~~~---------------~-~~~~---------- 74 (292)
T 1qqe_A 32 KFEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAADYQKK---------------A-GNED---------- 74 (292)
T ss_dssp HHHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHHHHHHH---------------T-TCHH----------
T ss_pred cHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHHHHH---------------h-CCHH----------
Confidence 478888776654 67788889999998888876541000 0 0000
Q ss_pred HhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC----HHHHHHHHHHHHHc-CChHHHHHHHHHHHHcCC
Q 046257 508 KAKLNNALCVSSALVTMYSKKGNIESASEVFKRQRK-----RD----LVSWNSMICGYAQH-GHTKKALEVFKEMRRQDL 577 (838)
Q Consensus 508 ~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~-----~~----~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~ 577 (838)
....+++.+..+|.+.|++++|...|++... .+ ..+|+.+...|... |++++|++.|++..+ +
T Consensus 75 -----~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~--~ 147 (292)
T 1qqe_A 75 -----EAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGE--W 147 (292)
T ss_dssp -----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--H
T ss_pred -----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH--H
Confidence 0123455677788888999999888876541 12 35788999999996 999999999999987 3
Q ss_pred CCC-------hhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCCc-----hHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 046257 578 EFD-------GITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTME-----HYSCMVDLYSRAGMLEKAMDIINRMPF 645 (838)
Q Consensus 578 ~pd-------~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~-----~y~~lv~~l~r~G~~~~A~~~~~~m~~ 645 (838)
.|+ ..++..+...+...|++++|..+|+...+...-.+... .|..+..++...|++++|.+.+++.
T Consensus 148 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a-- 225 (292)
T 1qqe_A 148 YAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEG-- 225 (292)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGG--
T ss_pred HHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH--
Confidence 332 24688889999999999999999999884321112211 4677788899999999999999987
Q ss_pred CCCHHHHHHHHHHHHHhccCCCCchh-----HHHHHHHHH--hcCCchHHHHHHHHHh
Q 046257 646 AASATVWRTVLAACRLISLQPHDSAI-----YVLLSNMYA--ATGHWQERARVRKLMN 696 (838)
Q Consensus 646 ~~~~~~w~~ll~~c~~~~l~P~~~~~-----y~~l~~~y~--~~g~~~~a~~~~~~m~ 696 (838)
++++|+.... +..+...|. ..+++++|.+.++.+.
T Consensus 226 ----------------l~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 226 ----------------QSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp ----------------GCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred ----------------HhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 5666654432 334555554 4577888888776553
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.72 E-value=3.2e-07 Score=90.72 Aligned_cols=161 Identities=13% Similarity=0.104 Sum_probs=123.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcC--CCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChh----HHHHH
Q 046257 518 SSALVTMYSKKGNIESASEVFKRQR--KRD----LVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGI----TFIGV 587 (838)
Q Consensus 518 ~~~li~~y~k~g~~~~A~~~f~~~~--~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~----t~~~l 587 (838)
+-.+...|.+.|++++|...|+++. .|+ ...+..+..+|.+.|++++|++.|++..+ ..|+.. .+..+
T Consensus 7 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~--~~P~~~~~~~a~~~~ 84 (225)
T 2yhc_A 7 IYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIR--LNPTHPNIDYVMYMR 84 (225)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--HCcCCCcHHHHHHHH
Confidence 3344556788899999999998876 232 25678888899999999999999999988 456542 33333
Q ss_pred HHHHh------------------ccCCHHHHHHHHHHHHhcCCccCCCc-hH-----------------HHHHHHHHhcC
Q 046257 588 ITACT------------------HAGLVDEGQQYFDIMVNEHHIYPTME-HY-----------------SCMVDLYSRAG 631 (838)
Q Consensus 588 l~a~~------------------~~g~~~~a~~~~~~m~~~~~~~p~~~-~y-----------------~~lv~~l~r~G 631 (838)
..++. ..|+.++|...|+.+++.+ |+.. .+ ..+...|.+.|
T Consensus 85 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~ 161 (225)
T 2yhc_A 85 GLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY---PNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERG 161 (225)
T ss_dssp HHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC---TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC---cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 33333 2578999999999988543 5432 22 24567889999
Q ss_pred CHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCc---hhHHHHHHHHHhcCCchHHHHHHHHHhhCCCc
Q 046257 632 MLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDS---AIYVLLSNMYAATGHWQERARVRKLMNDRKVK 701 (838)
Q Consensus 632 ~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~---~~y~~l~~~y~~~g~~~~a~~~~~~m~~~g~~ 701 (838)
++++|...++++ ++..|+++ .++..++.+|...|++++|.+.++.+...+.+
T Consensus 162 ~~~~A~~~~~~~------------------l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 162 AWVAVVNRVEGM------------------LRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp CHHHHHHHHHHH------------------HHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred cHHHHHHHHHHH------------------HHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 999999999987 67788765 57899999999999999999999999887654
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=98.72 E-value=1.5e-06 Score=93.23 Aligned_cols=223 Identities=7% Similarity=-0.130 Sum_probs=128.8
Q ss_pred HHHHHccCChHHHHHHHHHHHHcCCCCCcc----cHHHHHHHhccCCChhhHHHHHHHHHHhCCC-CCh----hHHHHHH
Q 046257 50 LFEYCRDSLHQEALNLFLGIRRLGLPLFGS----TLSSVLKTCGCLFDHVFGRQVHCECVKSGFA-RDV----NVSTSLV 120 (838)
Q Consensus 50 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~-~~~----~~~~~li 120 (838)
...+...|++++|+..+++........+.. .+..+...+...|+++.|...+...++.... .+. .+++.+.
T Consensus 21 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 100 (373)
T 1hz4_A 21 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 100 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 345567899999999998877654222221 3444555666778888888888776653211 111 2345566
Q ss_pred HHHHhCCChHHHHHHHccCCC-------C----CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCC--C--ChhhHHHH
Q 046257 121 DLYMRTNNVEDGRRVFDDMNE-------S----NVVSWTSLLSGYARNKMNDRVLELFHRMQVEGIK--P--NSFTFSTV 185 (838)
Q Consensus 121 ~~y~~~g~~~~A~~~f~~m~~-------~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--p--~~~t~~~l 185 (838)
..|...|++++|...|++... + ...++..+...+...|++++|...+++....... + ...++..+
T Consensus 101 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 180 (373)
T 1hz4_A 101 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 180 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHH
Confidence 677777888887777765431 1 1224555666777777888887777776543211 1 12345556
Q ss_pred HHHHhcCCChHHHHHHHHHHHHhCCCCch-hHHH-----HHHHHhHcCCChhHHHHHHhcCCCCCc-------chHHHHH
Q 046257 186 LGVLADEGIVATAVQVHTMVIKNGGEVVT-SVCN-----ALISMYLKSKMVRDARAVFDGMEDRDS-------ITWNSMV 252 (838)
Q Consensus 186 l~~~~~~g~~~~a~~l~~~~~~~g~~~~~-~~~~-----~li~~y~~~g~~~~A~~~f~~m~~~~~-------~~~n~li 252 (838)
...+...|++++|...++...+..-.++. ..+. .++..+...|+.++|...+++....+. ..+..+.
T Consensus 181 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la 260 (373)
T 1hz4_A 181 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA 260 (373)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHH
Confidence 66666777777777777776654211111 1111 223335566777777666666554221 1234455
Q ss_pred HHHHhCCChHHHHHHHHHhh
Q 046257 253 AGYVTNELHMEAFETFNNMG 272 (838)
Q Consensus 253 ~~~~~~g~~~~A~~l~~~m~ 272 (838)
..+...|++++|.+.+++..
T Consensus 261 ~~~~~~g~~~~A~~~l~~a~ 280 (373)
T 1hz4_A 261 RAQILLGEFEPAEIVLEELN 280 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHH
Confidence 55666666666666665543
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=1.7e-08 Score=92.84 Aligned_cols=123 Identities=11% Similarity=0.084 Sum_probs=102.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccC-CCchHHHHHHHHHh
Q 046257 552 MICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYP-TMEHYSCMVDLYSR 629 (838)
Q Consensus 552 li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r 629 (838)
|...+...|+.++|++.+++... ..|+ ...+..+...|...|++++|.+.|+..++. .| +...|..+..+|.+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~ 77 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV---QERDPKAHRFLGLLYEL 77 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHH
Confidence 44556677899999999999876 4555 456778889999999999999999999843 46 45788999999999
Q ss_pred cCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHH-HHHhh
Q 046257 630 AGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVR-KLMND 697 (838)
Q Consensus 630 ~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~-~~m~~ 697 (838)
.|++++|.+.+++. ++++|+++.+|..++.+|...|++++|.+.+ ++..+
T Consensus 78 ~~~~~~A~~~~~~a------------------l~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 78 EENTDKAVECYRRS------------------VELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp TTCHHHHHHHHHHH------------------HHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred cCchHHHHHHHHHH------------------HHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 99999999999987 8999999999999999999999999887754 65543
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.70 E-value=3.1e-07 Score=81.70 Aligned_cols=124 Identities=18% Similarity=0.310 Sum_probs=104.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHhc
Q 046257 517 VSSALVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGITFIGVITACTH 593 (838)
Q Consensus 517 ~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~ 593 (838)
.+..+...|...|++++|.++|+++. +.+...|..+...+...|++++|+..|+++...+ +.+...+..+...+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 45667788999999999999998765 4577889999999999999999999999999853 2345678888889999
Q ss_pred cCCHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHhcCCHHHHHHHHhhC
Q 046257 594 AGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDIINRM 643 (838)
Q Consensus 594 ~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~~m 643 (838)
.|++++|.++++.+.+.. +.+...+..++..+.+.|++++|.+.++++
T Consensus 82 ~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 129 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD--PRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 129 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 999999999999988542 224567888999999999999999999876
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.70 E-value=4.6e-07 Score=105.58 Aligned_cols=148 Identities=10% Similarity=0.024 Sum_probs=126.3
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHH
Q 046257 513 NALCVSSALVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVI 588 (838)
Q Consensus 513 ~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll 588 (838)
.+...+..+...|.+.|++++|.+.|++.. +.+...|..+...|...|++++|++.|++..+ +.|+ ...+..+.
T Consensus 431 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--l~P~~~~~~~~lg 508 (681)
T 2pzi_A 431 ESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLD--TFPGELAPKLALA 508 (681)
T ss_dssp TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTTCSHHHHHHH
T ss_pred cchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCChHHHHHHH
Confidence 345566677788999999999999999876 55788999999999999999999999999999 5676 46788899
Q ss_pred HHHhccCCHHHHHHHHHHHHhcCCccCC-CchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCC
Q 046257 589 TACTHAGLVDEGQQYFDIMVNEHHIYPT-MEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPH 667 (838)
Q Consensus 589 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~ 667 (838)
.++...|++++ .+.|+...+. .|+ ...|..+..+|.+.|++++|.+.+++. ++++|+
T Consensus 509 ~~~~~~g~~~~-~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a------------------l~l~P~ 566 (681)
T 2pzi_A 509 ATAELAGNTDE-HKFYQTVWST---NDGVISAAFGLARARSAEGDRVGAVRTLDEV------------------PPTSRH 566 (681)
T ss_dssp HHHHHHTCCCT-TCHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHTS------------------CTTSTT
T ss_pred HHHHHcCChHH-HHHHHHHHHh---CCchHHHHHHHHHHHHHcCCHHHHHHHHHhh------------------cccCcc
Confidence 99999999999 9999998843 454 467888999999999999999999998 688999
Q ss_pred CchhHHHHHHHHHhcCC
Q 046257 668 DSAIYVLLSNMYAATGH 684 (838)
Q Consensus 668 ~~~~y~~l~~~y~~~g~ 684 (838)
+..++..++.+|...|+
T Consensus 567 ~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 567 FTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHHHHHHHTC----
T ss_pred cHHHHHHHHHHHHccCC
Confidence 99999999999988666
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.69 E-value=1.7e-07 Score=88.72 Aligned_cols=156 Identities=10% Similarity=0.023 Sum_probs=121.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHH-Hhc
Q 046257 518 SSALVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGITFIGVITA-CTH 593 (838)
Q Consensus 518 ~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a-~~~ 593 (838)
...+...+.+.|++++|...|++.. +.+...|..+...|...|++++|+..|++... ..|+...+..+... +..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~--~~p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPL--EYQDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCG--GGCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhh--ccCChHHHHHHHHHHHHh
Confidence 3445667889999999999999987 45778899999999999999999999999877 45544332222111 122
Q ss_pred cCCHHHHHHHHHHHHhcCCccCC-CchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCC--ch
Q 046257 594 AGLVDEGQQYFDIMVNEHHIYPT-MEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHD--SA 670 (838)
Q Consensus 594 ~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~--~~ 670 (838)
.+...+|...++...+. .|+ ...+..+..+|.+.|++++|.+.++++ ++.+|+. +.
T Consensus 87 ~~~~~~a~~~~~~al~~---~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~------------------l~~~p~~~~~~ 145 (176)
T 2r5s_A 87 QAAESPELKRLEQELAA---NPDNFELACELAVQYNQVGRDEEALELLWNI------------------LKVNLGAQDGE 145 (176)
T ss_dssp HHTSCHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHH------------------HTTCTTTTTTH
T ss_pred hcccchHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcccHHHHHHHHHHH------------------HHhCcccChHH
Confidence 22233578888887743 464 677888999999999999999999987 7788764 66
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHh
Q 046257 671 IYVLLSNMYAATGHWQERARVRKLMN 696 (838)
Q Consensus 671 ~y~~l~~~y~~~g~~~~a~~~~~~m~ 696 (838)
.+..++.+|...|+.++|...+++..
T Consensus 146 a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 146 VKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 89999999999999999999887653
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.69 E-value=4.4e-07 Score=93.83 Aligned_cols=194 Identities=9% Similarity=0.050 Sum_probs=139.1
Q ss_pred hhHHHHHHHHcCCHHHHHHHHHhcCCC-----C----cchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHH
Q 046257 416 GTALLNAYVKKGILDEAAKVFELIDEK-----D----IVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVI 486 (838)
Q Consensus 416 ~~~Li~~y~~~g~~~~A~~~f~~~~~~-----~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 486 (838)
+......|...|++++|...|++..+- + ..+|+.+...|.+.|++++|+..|++.... .|
T Consensus 40 ~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l--~~--------- 108 (292)
T 1qqe_A 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQI--FT--------- 108 (292)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HH---------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--HH---------
Confidence 445577899999999999999866431 1 457889999999999999999999887651 10
Q ss_pred HHhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhc-CCHHHHHHHHHhcCC-----CC----HHHHHHHHHHH
Q 046257 487 NACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKK-GNIESASEVFKRQRK-----RD----LVSWNSMICGY 556 (838)
Q Consensus 487 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~-g~~~~A~~~f~~~~~-----~~----~~~~~~li~~~ 556 (838)
.. ++...+ ..+++.+..+|.+. |++++|...|++... .+ ..+|+.+...|
T Consensus 109 ----~~-g~~~~~---------------a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~ 168 (292)
T 1qqe_A 109 ----HR-GQFRRG---------------ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLK 168 (292)
T ss_dssp ----HT-TCHHHH---------------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ----Hc-CCHHHH---------------HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 00 111111 23455677788886 999999999987651 12 35688999999
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCChh------HHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCCc------hHHHHH
Q 046257 557 AQHGHTKKALEVFKEMRRQDLEFDGI------TFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTME------HYSCMV 624 (838)
Q Consensus 557 ~~~g~~~~A~~l~~~m~~~g~~pd~~------t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~------~y~~lv 624 (838)
...|++++|++.|++..+........ ++..+..++...|++++|...|+... .+.|+.. .+..++
T Consensus 169 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al---~l~p~~~~~~~~~~l~~l~ 245 (292)
T 1qqe_A 169 ALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQ---SEDPNFADSRESNFLKSLI 245 (292)
T ss_dssp HHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGG---CC---------HHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---hhCCCCCCcHHHHHHHHHH
Confidence 99999999999999999943222221 46777788889999999999999887 3445432 133345
Q ss_pred HHHH--hcCCHHHHHHHHhhC
Q 046257 625 DLYS--RAGMLEKAMDIINRM 643 (838)
Q Consensus 625 ~~l~--r~G~~~~A~~~~~~m 643 (838)
..+. ..+++++|.+.++++
T Consensus 246 ~~~~~~~~~~~~~A~~~~~~~ 266 (292)
T 1qqe_A 246 DAVNEGDSEQLSEHCKEFDNF 266 (292)
T ss_dssp HHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHcCCHHHHHHHHHHhccC
Confidence 5554 567899999999887
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.68 E-value=1.9e-06 Score=87.58 Aligned_cols=235 Identities=9% Similarity=0.023 Sum_probs=159.9
Q ss_pred HHHcCCHHHHHHHHHhcCCCCcc-hHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCChhhHHHHHH
Q 046257 423 YVKKGILDEAAKVFELIDEKDIV-AWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQ 501 (838)
Q Consensus 423 y~~~g~~~~A~~~f~~~~~~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~ 501 (838)
..-.|.+..+..-...+...+.. .-.-+.++|...|++... ..-.|....+..+..-. .. + +..
T Consensus 23 ~fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~-~----a~~ 87 (310)
T 3mv2_B 23 NYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DT-K----NIE 87 (310)
T ss_dssp HHTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TT-T----CCH
T ss_pred HHHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-cc-c----HHH
Confidence 34467777777755555432222 223345778878876632 11233332333222222 22 2 333
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 046257 502 FHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQRK-----RDLVSWNSMICGYAQHGHTKKALEVFKEMRRQD 576 (838)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 576 (838)
.+...+..+ .++......+...|...|++++|++++.+... .+...+-.++..|.+.|+.+.|.+.+++|.+
T Consensus 88 ~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~-- 164 (310)
T 3mv2_B 88 ELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN-- 164 (310)
T ss_dssp HHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--
T ss_pred HHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--
Confidence 444444443 34445556788899999999999999998742 3556778889999999999999999999988
Q ss_pred CCC-----ChhHHHHHHHH--HhccC--CHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHhcCCHHHHHHHHhhCCCCC
Q 046257 577 LEF-----DGITFIGVITA--CTHAG--LVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDIINRMPFAA 647 (838)
Q Consensus 577 ~~p-----d~~t~~~ll~a--~~~~g--~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~ 647 (838)
..| +..+...+..+ ....| +.++|..+|+++...+ |+......+..++.+.|++++|++.++.+
T Consensus 165 ~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~---p~~~~~~lLln~~~~~g~~~eAe~~L~~l---- 237 (310)
T 3mv2_B 165 AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF---PTWKTQLGLLNLHLQQRNIAEAQGIVELL---- 237 (310)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS---CSHHHHHHHHHHHHHHTCHHHHHHHHHHH----
T ss_pred cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC---CCcccHHHHHHHHHHcCCHHHHHHHHHHH----
Confidence 677 35566666655 33334 8999999999997543 44223334445899999999999999865
Q ss_pred CHHHHHHHHHHHHHhcc----------CCCCchhHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 046257 648 SATVWRTVLAACRLISL----------QPHDSAIYVLLSNMYAATGHWQERARVRKLMNDR 698 (838)
Q Consensus 648 ~~~~w~~ll~~c~~~~l----------~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~~ 698 (838)
+++ +|+|+.++..++.++...|+ +|.++++++++.
T Consensus 238 --------------~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 238 --------------LSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp --------------HSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred --------------HHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 333 58899999888888888897 899999999874
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=1.7e-07 Score=96.60 Aligned_cols=161 Identities=10% Similarity=-0.012 Sum_probs=131.6
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHH-HH
Q 046257 512 NNALCVSSALVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGITFI-GV 587 (838)
Q Consensus 512 ~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~-~l 587 (838)
+.+......+...+...|++++|...|++.. +.+...+..+...|...|++++|++.|++... ..|+..... ..
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~--~~p~~~~~~~~~ 191 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL--QDQDTRYQGLVA 191 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG--GGCSHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch--hhcchHHHHHHH
Confidence 4445556667778889999999999999875 45778899999999999999999999999987 467654332 23
Q ss_pred HHHHhccCCHHHHHHHHHHHHhcCCccC-CCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCC
Q 046257 588 ITACTHAGLVDEGQQYFDIMVNEHHIYP-TMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQP 666 (838)
Q Consensus 588 l~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P 666 (838)
...+...|..++|...++..... .| +...+..+..+|...|++++|.+.++++ ++.+|
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~---~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~------------------l~~~p 250 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAE---NPEDAALATQLALQLHQVGRNEEALELLFGH------------------LRXDL 250 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH------------------HHHCT
T ss_pred HHHHHhhcccCccHHHHHHHHhc---CCccHHHHHHHHHHHHHcccHHHHHHHHHHH------------------Hhccc
Confidence 33466777888899999888744 45 4577888999999999999999999987 78889
Q ss_pred CC--chhHHHHHHHHHhcCCchHHHHHHHHH
Q 046257 667 HD--SAIYVLLSNMYAATGHWQERARVRKLM 695 (838)
Q Consensus 667 ~~--~~~y~~l~~~y~~~g~~~~a~~~~~~m 695 (838)
++ ..++..|+.+|...|+.++|...+++.
T Consensus 251 ~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~a 281 (287)
T 3qou_A 251 TAADGQTRXTFQEILAALGTGDALASXYRRQ 281 (287)
T ss_dssp TGGGGHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 87 889999999999999999998877654
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.66 E-value=2e-06 Score=92.59 Aligned_cols=228 Identities=10% Similarity=0.048 Sum_probs=148.2
Q ss_pred HHHHHHcCCChHHHHHHHHhccc----CCC----eeehHHHHHHHHHcCChHHHHHHHHHhhhcCCCCCcccHHHHHhhC
Q 046257 321 LMVAYSKCGKMEDASKIFSMMRE----MKD----VVSWTAMISGHLQNGAIDLAVNFFCQMTREGVRPNGFTYSIILTAQ 392 (838)
Q Consensus 321 Li~~y~~~g~~~~A~~~f~~~~~----~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~ 392 (838)
....+...|++++|...|++... .++ ...+..+...|...|++++|+..+.+..+.-...+....
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~------- 179 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSI------- 179 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHH-------
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchh-------
Confidence 44556788999999999988753 122 245778888999999999999999887763111000000
Q ss_pred CCCChhHHHHHHHHhhccCCcchhhHHHHHHHHcCCHHHHHHHHHhcCC-----CC----cchHHHHHHHHHhcCCchHH
Q 046257 393 PAVSPFQVHAHIIKTNYEKSFSVGTALLNAYVKKGILDEAAKVFELIDE-----KD----IVAWSAMLAGYAQIGDTEGA 463 (838)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~-----~~----~~~~~~li~~~~~~g~~~~A 463 (838)
....+++.+...|...|++++|.+.|++..+ ++ ..+++.+...|...|++++|
T Consensus 180 ------------------~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A 241 (378)
T 3q15_A 180 ------------------RTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMA 241 (378)
T ss_dssp ------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred ------------------hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 0012335688889999999999998876543 11 24677888889999999999
Q ss_pred HHHHHHhhcCCCCCCHhhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC-
Q 046257 464 VKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQR- 542 (838)
Q Consensus 464 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~- 542 (838)
++.|++.....- +.+.+....++..+...|.+.|++++|...+++..
T Consensus 242 ~~~~~~al~~~~--------------------------------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 289 (378)
T 3q15_A 242 VEHFQKAAKVSR--------------------------------EKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLD 289 (378)
T ss_dssp HHHHHHHHHHHH--------------------------------HHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--------------------------------hhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999888764100 00111113344456667778888888887777543
Q ss_pred ------CCC-HHHHHHHHHHHHHcCC---hHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHHH
Q 046257 543 ------KRD-LVSWNSMICGYAQHGH---TKKALEVFKEMRRQDLEFD-GITFIGVITACTHAGLVDEGQQYFDIMV 608 (838)
Q Consensus 543 ------~~~-~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 608 (838)
.+. ...++.+...|...|+ .++|+..+++ .+..|+ ...+..+...+...|+.++|..+|+...
T Consensus 290 ~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 290 HITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 111 2345555556666677 6677776665 223333 2345567777888888888888887765
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.58 E-value=4.9e-07 Score=91.70 Aligned_cols=192 Identities=10% Similarity=0.059 Sum_probs=134.1
Q ss_pred CCcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHH
Q 046257 442 KDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFHACSIKAKLNNALCVSSAL 521 (838)
Q Consensus 442 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 521 (838)
.+...+-.+...+.+.|++++|+..|+++... .|+.... ...+..+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~--------------------------------~~a~~~l 58 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTY--GRTHEWA--------------------------------ADAQFYL 58 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGG--CSCSTTH--------------------------------HHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCcch--------------------------------HHHHHHH
Confidence 34455666777888889999999999888764 3432111 1222334
Q ss_pred HHHHHhcCCHHHHHHHHHhcC--CC----CHHHHHHHHHHHHH--------cCChHHHHHHHHHHHHcCCCCCh-hHH--
Q 046257 522 VTMYSKKGNIESASEVFKRQR--KR----DLVSWNSMICGYAQ--------HGHTKKALEVFKEMRRQDLEFDG-ITF-- 584 (838)
Q Consensus 522 i~~y~k~g~~~~A~~~f~~~~--~~----~~~~~~~li~~~~~--------~g~~~~A~~l~~~m~~~g~~pd~-~t~-- 584 (838)
...|.+.|++++|...|++.. .| ....|..+..+|.. .|++++|+..|++..+ ..|+. ...
T Consensus 59 g~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~a 136 (261)
T 3qky_A 59 ARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFID--RYPNHELVDDA 136 (261)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHH--HCTTCTTHHHH
T ss_pred HHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHH--HCcCchhHHHH
Confidence 556778888999988888765 22 13467777888888 8999999999999988 45653 233
Q ss_pred ---------------HHHHHHHhccCCHHHHHHHHHHHHhcCCccC-CCchHHHHHHHHHhc----------CCHHHHHH
Q 046257 585 ---------------IGVITACTHAGLVDEGQQYFDIMVNEHHIYP-TMEHYSCMVDLYSRA----------GMLEKAMD 638 (838)
Q Consensus 585 ---------------~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~----------G~~~~A~~ 638 (838)
..+...+...|++++|...|+.+++.+.-.| ....+..+..+|.+. |++++|.+
T Consensus 137 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~ 216 (261)
T 3qky_A 137 TQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVE 216 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHH
Confidence 4557788899999999999999986542212 123566777888766 89999999
Q ss_pred HHhhCCCCCCHHHHHHHHHHHHHhccCCCCch---hHHHHHHHHHhcCCchH
Q 046257 639 IINRMPFAASATVWRTVLAACRLISLQPHDSA---IYVLLSNMYAATGHWQE 687 (838)
Q Consensus 639 ~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~---~y~~l~~~y~~~g~~~~ 687 (838)
.++++ ++..|+++. ++..+..++...|+.++
T Consensus 217 ~~~~~------------------~~~~p~~~~~~~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 217 LYERL------------------LQIFPDSPLLRTAEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHHH------------------HHHCTTCTHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHH------------------HHHCCCChHHHHHHHHHHHHHHHHHHhhh
Confidence 99987 677887753 44555666555555444
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=4e-07 Score=104.05 Aligned_cols=159 Identities=8% Similarity=-0.011 Sum_probs=117.4
Q ss_pred hhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 046257 494 AAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFK 570 (838)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~ 570 (838)
++++.+...+..+++.. +.+...+..+...|.+.|++++|.+.|++.. +.+...|..+...|...|++++|++.|+
T Consensus 3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 66777887777776653 3356778888889999999999999998765 4467888999999999999999999999
Q ss_pred HHHHcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccC-CCchHHHHHHHHHhc---CCHHHHHHHHhhCCC
Q 046257 571 EMRRQDLEFD-GITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYP-TMEHYSCMVDLYSRA---GMLEKAMDIINRMPF 645 (838)
Q Consensus 571 ~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~---G~~~~A~~~~~~m~~ 645 (838)
+..+ ..|+ ...+..+..++...|++++|.+.++...+. .| +...+..+..++.+. |+.++|.+.+++.
T Consensus 82 ~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a-- 154 (568)
T 2vsy_A 82 QASD--AAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL---LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA-- 154 (568)
T ss_dssp HHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH--
T ss_pred HHHh--cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH--
Confidence 9988 4565 567888888899999999999999988743 34 346778888889888 9999999999887
Q ss_pred CCCHHHHHHHHHHHHHhccCCCCchhHHHHH
Q 046257 646 AASATVWRTVLAACRLISLQPHDSAIYVLLS 676 (838)
Q Consensus 646 ~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~ 676 (838)
++.+|++...|..++
T Consensus 155 ----------------l~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 155 ----------------VAQGVGAVEPFAFLS 169 (568)
T ss_dssp ----------------HHHTCCCSCHHHHTT
T ss_pred ----------------HhcCCcccChHHHhC
Confidence 788998888887776
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.57 E-value=5.7e-07 Score=91.84 Aligned_cols=196 Identities=12% Similarity=0.148 Sum_probs=119.8
Q ss_pred cchHHHHHHHHHhcCCchHHHHHHHHhhcC------CCCCC-HhhHHHHHHHhcCChhhHHHHHHHHHHHHHhc------
Q 046257 444 IVAWSAMLAGYAQIGDTEGAVKIYRQLTSE------GVKPN-EFTFSSVINACTAPSAAVEQGKQFHACSIKAK------ 510 (838)
Q Consensus 444 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~p~-~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~------ 510 (838)
..+|..+...|...|++++|+..|++.... +-.|. ..++..+-..+... +.++.+...+..+++..
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~~~~~ 121 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKR-GKYKEAEPLCKRALEIREKVLGK 121 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHcCC
Confidence 346777777777888888888877776643 11222 23455555555565 77777777666665431
Q ss_pred -CCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-------C----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHc---
Q 046257 511 -LNNALCVSSALVTMYSKKGNIESASEVFKRQRK-------R----DLVSWNSMICGYAQHGHTKKALEVFKEMRRQ--- 575 (838)
Q Consensus 511 -~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--- 575 (838)
.+.....+..+...|...|++++|...|++... + ...+|..+...|...|++++|++.|++..+.
T Consensus 122 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~ 201 (283)
T 3edt_B 122 FHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHE 201 (283)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 122355667788888888999988888876541 1 2456788888888999999999999888763
Q ss_pred ----CCCCChh-HHHHHHHHHhccCC------HHHHHHHHHHHHhcCCccC-CCchHHHHHHHHHhcCCHHHHHHHHhhC
Q 046257 576 ----DLEFDGI-TFIGVITACTHAGL------VDEGQQYFDIMVNEHHIYP-TMEHYSCMVDLYSRAGMLEKAMDIINRM 643 (838)
Q Consensus 576 ----g~~pd~~-t~~~ll~a~~~~g~------~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~G~~~~A~~~~~~m 643 (838)
...|... .+..+.......+. +.++..+++... ...| ....+..+..+|.+.|++++|.+++++.
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 278 (283)
T 3edt_B 202 KEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACK---VDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCA 278 (283)
T ss_dssp HHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCC---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1233332 33333333333222 223333322211 0112 2346788899999999999999999865
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.54 E-value=8.6e-07 Score=90.10 Aligned_cols=185 Identities=11% Similarity=0.095 Sum_probs=126.5
Q ss_pred HHHHHHhcCC---CCcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCChhhHHHHHHHHHHHHH
Q 046257 432 AAKVFELIDE---KDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFHACSIK 508 (838)
Q Consensus 432 A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~ 508 (838)
|...|++..+ ++..++..+..+|...|++++|++++.+....|-.++
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~------------------------------ 134 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEG------------------------------ 134 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTT------------------------------
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcC------------------------------
Confidence 5666665543 3344455666777777888888887777654332111
Q ss_pred hcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC--CC-----CHHHHHHHHHH--HHHcC--ChHHHHHHHHHHHHcCC
Q 046257 509 AKLNNALCVSSALVTMYSKKGNIESASEVFKRQR--KR-----DLVSWNSMICG--YAQHG--HTKKALEVFKEMRRQDL 577 (838)
Q Consensus 509 ~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~--~~-----~~~~~~~li~~--~~~~g--~~~~A~~l~~~m~~~g~ 577 (838)
+......++..|.+.|+.+.|.+.+++|. .| +-.+...|..+ ....| +..+|..+|+++.+ -
T Consensus 135 -----~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~--~ 207 (310)
T 3mv2_B 135 -----TTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQ--T 207 (310)
T ss_dssp -----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHT--T
T ss_pred -----cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH--h
Confidence 22333446778999999999999999887 45 24555556656 33334 89999999999977 4
Q ss_pred CCChhHHHHHHHHHhccCCHHHHHHHHHHHHhcCC----c---cC-CCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCH
Q 046257 578 EFDGITFIGVITACTHAGLVDEGQQYFDIMVNEHH----I---YP-TMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASA 649 (838)
Q Consensus 578 ~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~----~---~p-~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~ 649 (838)
.|+..+-..++.++.+.|++++|.+.++.+.+.+. . .| ++.++..+|.+....|+ +|.++++++
T Consensus 208 ~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL------ 279 (310)
T 3mv2_B 208 FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQL------ 279 (310)
T ss_dssp SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHH------
T ss_pred CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHH------
Confidence 56644445556688999999999999997764321 0 23 45566566777777887 899999887
Q ss_pred HHHHHHHHHHHHhccCCCCchhHH
Q 046257 650 TVWRTVLAACRLISLQPHDSAIYV 673 (838)
Q Consensus 650 ~~w~~ll~~c~~~~l~P~~~~~y~ 673 (838)
.+.+|+++.+..
T Consensus 280 ------------~~~~P~hp~i~d 291 (310)
T 3mv2_B 280 ------------VKLDHEHAFIKH 291 (310)
T ss_dssp ------------HHTTCCCHHHHH
T ss_pred ------------HHhCCCChHHHH
Confidence 678888876543
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.53 E-value=6e-06 Score=85.89 Aligned_cols=131 Identities=6% Similarity=-0.040 Sum_probs=77.5
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 046257 446 AWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMY 525 (838)
Q Consensus 446 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y 525 (838)
+|+.+...|.+.|++++|+..|++.... +... ++.... ...++.+...|
T Consensus 78 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l---------------~~~~-g~~~~~---------------a~~~~~lg~~~ 126 (307)
T 2ifu_A 78 AFEQAGMMLKDLQRMPEAVQYIEKASVM---------------YVEN-GTPDTA---------------AMALDRAGKLM 126 (307)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHH---------------HHTT-TCHHHH---------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHH---------------HHHc-CCHHHH---------------HHHHHHHHHHH
Confidence 4566677788888888888888776531 0001 111100 12334455566
Q ss_pred HhcCCHHHHHHHHHhcCC-----CC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHc----CCCCC-hhHHHHHHHHH
Q 046257 526 SKKGNIESASEVFKRQRK-----RD----LVSWNSMICGYAQHGHTKKALEVFKEMRRQ----DLEFD-GITFIGVITAC 591 (838)
Q Consensus 526 ~k~g~~~~A~~~f~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~pd-~~t~~~ll~a~ 591 (838)
.+ |++++|...|++... .+ ..+|+.+...|...|++++|++.|++..+. +..++ ..++..+..++
T Consensus 127 ~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~ 205 (307)
T 2ifu_A 127 EP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQ 205 (307)
T ss_dssp TT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred Hc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHH
Confidence 66 888888777765541 11 346777777777888888888888777662 11111 12444555555
Q ss_pred hccCCHHHHHHHHHHHH
Q 046257 592 THAGLVDEGQQYFDIMV 608 (838)
Q Consensus 592 ~~~g~~~~a~~~~~~m~ 608 (838)
...|++++|...|+...
T Consensus 206 ~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 206 LHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHTTCHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHh
Confidence 56677777777777664
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.52 E-value=3.9e-06 Score=86.64 Aligned_cols=164 Identities=10% Similarity=0.000 Sum_probs=119.8
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCC---CH------HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-Ch----hHHHH
Q 046257 521 LVTMYSKKGNIESASEVFKRQRKR---DL------VSWNSMICGYAQHGHTKKALEVFKEMRRQDLEF-DG----ITFIG 586 (838)
Q Consensus 521 li~~y~k~g~~~~A~~~f~~~~~~---~~------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~----~t~~~ 586 (838)
.+..+.+.|++++|.+++++.... +. ..+..+...|...|++++|++.|++..+..... |. .+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 366788999999999999886521 11 133446677777889999999999999843332 22 26888
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhcC----CccCC-CchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHH
Q 046257 587 VITACTHAGLVDEGQQYFDIMVNEH----HIYPT-MEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRL 661 (838)
Q Consensus 587 ll~a~~~~g~~~~a~~~~~~m~~~~----~~~p~-~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~ 661 (838)
+..++...|++++|..+|+.+.+.. +..+. ...|..+...|.+.|++++|.+.+++.- .-+.-
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al------------~~~~~ 228 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAI------------EISCR 228 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH------------HHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH------------HHHHH
Confidence 9999999999999999999987422 11122 2367889999999999999999998761 01110
Q ss_pred hccCCCCchhHHHHHHHHHhcCC-chHHHHHHHHHh
Q 046257 662 ISLQPHDSAIYVLLSNMYAATGH-WQERARVRKLMN 696 (838)
Q Consensus 662 ~~l~P~~~~~y~~l~~~y~~~g~-~~~a~~~~~~m~ 696 (838)
....+.-+..|..++.+|...|+ +++|.+.+++..
T Consensus 229 ~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 229 INSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp TTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 11122236789999999999995 599998887764
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.51 E-value=7.8e-07 Score=78.68 Aligned_cols=110 Identities=11% Similarity=0.068 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCC-CchHHHHH
Q 046257 547 VSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPT-MEHYSCMV 624 (838)
Q Consensus 547 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv 624 (838)
..|......|.+.|++++|++.|++.++ +.|+ ..+|..+..++...|++++|...|+..++. .|+ ...|..+.
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---~p~~~~a~~~lg 88 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVK--RDPENAILYSNRAACLTKLMEFQRALDDCDTCIRL---DSKFIKGYIRKA 88 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh---hhhhhHHHHHHH
Confidence 4577788899999999999999999988 4565 567888888999999999999999988743 453 56788899
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHH
Q 046257 625 DLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMY 679 (838)
Q Consensus 625 ~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y 679 (838)
.+|...|++++|.+.+++. ++++|+++.++..|.+++
T Consensus 89 ~~~~~~~~~~~A~~~~~~a------------------l~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 89 ACLVAMREWSKAQRAYEDA------------------LQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHH------------------HHHCTTCHHHHHHHHHHC
T ss_pred HHHHHCCCHHHHHHHHHHH------------------HHHCcCCHHHHHHHHHhc
Confidence 9999999999999999987 889999999888887653
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.48 E-value=1.3e-06 Score=85.32 Aligned_cols=139 Identities=10% Similarity=0.103 Sum_probs=73.9
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccCCHHH
Q 046257 521 LVTMYSKKGNIESASEVFKRQRKRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITACTHAGLVDE 599 (838)
Q Consensus 521 li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~ 599 (838)
+...|.+.|++++|.+.|++..+++...|..+...|...|++++|++.|++..+. .|+ ...+..+..++...|++++
T Consensus 12 ~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~lg~~~~~~~~~~~ 89 (213)
T 1hh8_A 12 EGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLYYQTEKYDL 89 (213)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcccHHH
Confidence 3444555555555555555555445555555555555555555555555555542 232 2334444444444444444
Q ss_pred HHHHHHHHHhcCCccCCCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHH
Q 046257 600 GQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMY 679 (838)
Q Consensus 600 a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y 679 (838)
|.+.|+...+.. |+..... +.... ....|..+..+..++.+|
T Consensus 90 A~~~~~~al~~~---~~~~~~~------------------~~~~~-----------------~~~~~~~~~~~~~l~~~~ 131 (213)
T 1hh8_A 90 AIKDLKEALIQL---RGNQLID------------------YKILG-----------------LQFKLFACEVLYNIAFMY 131 (213)
T ss_dssp HHHHHHHHHHTT---TTCSEEE------------------CGGGT-----------------BCCEEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC---CCccHHH------------------HHHhc-----------------cccCccchHHHHHHHHHH
Confidence 444444443211 1110000 00000 123344458999999999
Q ss_pred HhcCCchHHHHHHHHHhhCC
Q 046257 680 AATGHWQERARVRKLMNDRK 699 (838)
Q Consensus 680 ~~~g~~~~a~~~~~~m~~~g 699 (838)
...|++++|.+.++...+..
T Consensus 132 ~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 132 AKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHTTCHHHHHHHHHHHHTTC
T ss_pred HHccCHHHHHHHHHHHHHcC
Confidence 99999999999999987643
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.47 E-value=4.2e-07 Score=105.90 Aligned_cols=148 Identities=11% Similarity=0.012 Sum_probs=130.3
Q ss_pred HhcCCHHHHHHHHHhcC-----------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhc
Q 046257 526 SKKGNIESASEVFKRQR-----------KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITACTH 593 (838)
Q Consensus 526 ~k~g~~~~A~~~f~~~~-----------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~ 593 (838)
...|++++|.+.|++.. +.+...|..+...|...|++++|++.|++..+ ..|+ ...+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAE--RVGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HHCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhc--cCcchHHHHHHHHHHHHH
Confidence 56788999998888764 45678899999999999999999999999999 5675 4678888889999
Q ss_pred cCCHHHHHHHHHHHHhcCCccC-CCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhH
Q 046257 594 AGLVDEGQQYFDIMVNEHHIYP-TMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIY 672 (838)
Q Consensus 594 ~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y 672 (838)
.|++++|.+.|++..+. .| +...|..+..+|.+.|++++ ++.+++. ++++|+++.+|
T Consensus 480 ~g~~~~A~~~~~~al~l---~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~a------------------l~~~P~~~~a~ 537 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDT---FPGELAPKLALAATAELAGNTDE-HKFYQTV------------------WSTNDGVISAA 537 (681)
T ss_dssp HTCHHHHHHHHHHHHHH---STTCSHHHHHHHHHHHHHTCCCT-TCHHHHH------------------HHHCTTCHHHH
T ss_pred cCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCChHH-HHHHHHH------------------HHhCCchHHHH
Confidence 99999999999998843 46 45678899999999999999 9999987 88999999999
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHhh
Q 046257 673 VLLSNMYAATGHWQERARVRKLMND 697 (838)
Q Consensus 673 ~~l~~~y~~~g~~~~a~~~~~~m~~ 697 (838)
..++.+|...|++++|.+.+++..+
T Consensus 538 ~~lg~~~~~~g~~~~A~~~~~~al~ 562 (681)
T 2pzi_A 538 FGLARARSAEGDRVGAVRTLDEVPP 562 (681)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCT
T ss_pred HHHHHHHHHcCCHHHHHHHHHhhcc
Confidence 9999999999999999999987654
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.47 E-value=2.1e-06 Score=83.66 Aligned_cols=167 Identities=15% Similarity=0.078 Sum_probs=114.8
Q ss_pred HHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhc
Q 046257 449 AMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKK 528 (838)
Q Consensus 449 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~ 528 (838)
.....+.+.|++++|+..|++.... .|+......... .... ........+.+...|.+.
T Consensus 9 ~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~-~~~~------------------~~~~~~~~~~lg~~~~~~ 67 (208)
T 3urz_A 9 QKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTN-VDKN------------------SEISSKLATELALAYKKN 67 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHH-SCTT------------------SHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhh-hcch------------------hhhhHHHHHHHHHHHHHC
Confidence 3445667889999999999988763 454432211111 1111 011123344577889999
Q ss_pred CCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccCC--HHHHHH
Q 046257 529 GNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITACTHAGL--VDEGQQ 602 (838)
Q Consensus 529 g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~--~~~a~~ 602 (838)
|++++|...|++.. +.+...|..+...|...|++++|++.|++.++ +.|+ ..++..+..++...|. .+++..
T Consensus 68 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~~~~~~~~~~~ 145 (208)
T 3urz_A 68 RNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQ--LEADNLAANIFLGNYYYLTAEQEKKKLET 145 (208)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 99999999999875 55788999999999999999999999999999 6776 4567777777765543 344455
Q ss_pred HHHHHHhcCCccCCCch--HHHHHHHHHhcCCHHHHHHHHhhC
Q 046257 603 YFDIMVNEHHIYPTMEH--YSCMVDLYSRAGMLEKAMDIINRM 643 (838)
Q Consensus 603 ~~~~m~~~~~~~p~~~~--y~~lv~~l~r~G~~~~A~~~~~~m 643 (838)
.++... .|+... +..+...+...|++++|.+.+++.
T Consensus 146 ~~~~~~-----~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~a 183 (208)
T 3urz_A 146 DYKKLS-----SPTKMQYARYRDGLSKLFTTRYEKARNSLQKV 183 (208)
T ss_dssp HHC--------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHh-----CCCchhHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 554443 344332 333456677789999999999987
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.47 E-value=4.6e-06 Score=81.44 Aligned_cols=160 Identities=9% Similarity=-0.031 Sum_probs=132.6
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcC----ChHHHHHHHHHHHHcCCCCChhHHHHHH
Q 046257 514 ALCVSSALVTMYSKKGNIESASEVFKRQR-KRDLVSWNSMICGYAQHG----HTKKALEVFKEMRRQDLEFDGITFIGVI 588 (838)
Q Consensus 514 ~~~~~~~li~~y~k~g~~~~A~~~f~~~~-~~~~~~~~~li~~~~~~g----~~~~A~~l~~~m~~~g~~pd~~t~~~ll 588 (838)
++.....|..+|...|++++|.+.|++.. ..+...+..|...|.. | +.++|++.|++..+.| +...+..|.
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~Lg 92 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIVLA 92 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 56666777888889999999999999876 4577888889888888 6 8999999999998865 566777788
Q ss_pred HHHhc----cCCHHHHHHHHHHHHhcCCccCC---CchHHHHHHHHHh----cCCHHHHHHHHhhCCCCCCHHHHHHHHH
Q 046257 589 TACTH----AGLVDEGQQYFDIMVNEHHIYPT---MEHYSCMVDLYSR----AGMLEKAMDIINRMPFAASATVWRTVLA 657 (838)
Q Consensus 589 ~a~~~----~g~~~~a~~~~~~m~~~~~~~p~---~~~y~~lv~~l~r----~G~~~~A~~~~~~m~~~~~~~~w~~ll~ 657 (838)
..+.. .+++++|.++|+... +. .|. +..+..|..+|.. .+++++|.+.+++.
T Consensus 93 ~~y~~g~g~~~d~~~A~~~~~~A~-~~--~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A-------------- 155 (212)
T 3rjv_A 93 RVLVNRQAGATDVAHAITLLQDAA-RD--SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGS-------------- 155 (212)
T ss_dssp HHHTCGGGSSCCHHHHHHHHHHHT-SS--TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHH--------------
T ss_pred HHHHcCCCCccCHHHHHHHHHHHH-Hc--CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH--------------
Confidence 88877 889999999999987 32 332 5678888899988 88999999999986
Q ss_pred HHHHhccCCCCchhHHHHHHHHHhc-C-----CchHHHHHHHHHhhCC
Q 046257 658 ACRLISLQPHDSAIYVLLSNMYAAT-G-----HWQERARVRKLMNDRK 699 (838)
Q Consensus 658 ~c~~~~l~P~~~~~y~~l~~~y~~~-g-----~~~~a~~~~~~m~~~g 699 (838)
.++ |.++.++..|+.+|... | ++++|..++++..+.|
T Consensus 156 ----~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 156 ----SSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp ----HHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred ----HHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 344 56788999999999865 3 8999999999988765
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.47 E-value=4.7e-06 Score=81.18 Aligned_cols=129 Identities=14% Similarity=0.038 Sum_probs=98.8
Q ss_pred HhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHH
Q 046257 488 ACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKK 564 (838)
Q Consensus 488 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~ 564 (838)
.+... +.++.+...+..+ ++++...+..+...|.+.|++++|.+.|++.. +.+...|..+...|...|++++
T Consensus 15 ~~~~~-~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~ 89 (213)
T 1hh8_A 15 LAADK-KDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDL 89 (213)
T ss_dssp HHHHT-TCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHh-CCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHH
Confidence 34445 8888888887766 35678899999999999999999999998765 5577899999999999999999
Q ss_pred HHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCC-CchHHHHHHHHHhcCCHHHHHHHHhhC
Q 046257 565 ALEVFKEMRRQDLEFDGITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPT-MEHYSCMVDLYSRAGMLEKAMDIINRM 643 (838)
Q Consensus 565 A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~G~~~~A~~~~~~m 643 (838)
|++.|++..+ ..|+..... +...| ....|+ ...+..+..+|.+.|++++|.+.+++.
T Consensus 90 A~~~~~~al~--~~~~~~~~~-----~~~~~---------------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 147 (213)
T 1hh8_A 90 AIKDLKEALI--QLRGNQLID-----YKILG---------------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA 147 (213)
T ss_dssp HHHHHHHHHH--TTTTCSEEE-----CGGGT---------------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHH--hCCCccHHH-----HHHhc---------------cccCccchHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 9999999998 445432100 00001 012232 356777889999999999999999987
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.43 E-value=3.1e-06 Score=73.91 Aligned_cols=116 Identities=16% Similarity=0.306 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCCchHHHHH
Q 046257 546 LVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEF-DGITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMV 624 (838)
Q Consensus 546 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv 624 (838)
...|..+...|...|++++|++.|+++.+. .| +..++..+...+...|++++|..+|+.+.+.. +.+...+..+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la 84 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLG 84 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CccHHHHHHHH
Confidence 567888888888999999999999998874 34 45677788888888999999999998887432 22456777888
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcC
Q 046257 625 DLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATG 683 (838)
Q Consensus 625 ~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g 683 (838)
..|.+.|++++|.+.++++ ++++|+++..+..++.++...|
T Consensus 85 ~~~~~~~~~~~A~~~~~~~------------------~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 85 NAYYKQGDYDEAIEYYQKA------------------LELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHHHTTCHHHHHHHHHHH------------------HHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHhcCHHHHHHHHHHH------------------HHhCCCcHHHHHHHHHHHHhcc
Confidence 9999999999999999887 6778888888888888877654
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.42 E-value=9.7e-05 Score=81.92 Aligned_cols=388 Identities=12% Similarity=0.050 Sum_probs=204.2
Q ss_pred hCC-ChHHHHHHHccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCC-hHHHHHHH
Q 046257 125 RTN-NVEDGRRVFDDMNESNVVSWTSLLSGYARNKMNDRVLELFHRMQVEGIKPNSFTFSTVLGVLADEGI-VATAVQVH 202 (838)
Q Consensus 125 ~~g-~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~-~~~a~~l~ 202 (838)
+.| +++.|+.+|+.+. ..+-. |+++.+..+|++.... .|+...|..-++...+.++ .+....+|
T Consensus 6 ~~~~~i~~aR~vyer~l-----------~~~P~-~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~f 71 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHAR-----------RLYMS-KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVY 71 (493)
T ss_dssp ------CCHHHHHHHHH-----------HHHHT-TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHH
T ss_pred HcCcchHHHHHHHHHHH-----------HHCCC-CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHH
Confidence 345 3677777776643 22221 8899999999988763 4788888777777665553 35567788
Q ss_pred HHHHHh-CC-CCchhHHHHHHHHhHc----CCChhHHHHHHhcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHhhhCCC
Q 046257 203 TMVIKN-GG-EVVTSVCNALISMYLK----SKMVRDARAVFDGMEDRDSITWNSMVAGYVTNELHMEAFETFNNMGLAGA 276 (838)
Q Consensus 203 ~~~~~~-g~-~~~~~~~~~li~~y~~----~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~ 276 (838)
+.++.. |. ..+..+|...+..+.. .|+++.++++|+....--...+..+-. .|..+...
T Consensus 72 e~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~-------------~Y~~fE~~-- 136 (493)
T 2uy1_A 72 EFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWK-------------DFENFELE-- 136 (493)
T ss_dssp HHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHH-------------HHHHHHHH--
T ss_pred HHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHH-------------HHHHHHHH--
Confidence 887775 43 3356777777776543 356777888887654311111111111 11111111
Q ss_pred CCChhhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCC--C-----hHHHHHHHHhccc--CCCe
Q 046257 277 ELTRSTFVSVIKLCATTKELRLARQLHSQVLKNGIDFDHNIRTGLMVAYSKCG--K-----MEDASKIFSMMRE--MKDV 347 (838)
Q Consensus 277 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g--~-----~~~A~~~f~~~~~--~~~~ 347 (838)
.+..+...++... .+.+..|+.++..+...-...+...|...++.-...+ - .+.+..+|++... ..+.
T Consensus 137 -~~~~~~~~~~~~~--~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~ 213 (493)
T 2uy1_A 137 -LNKITGKKIVGDT--LPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAE 213 (493)
T ss_dssp -HCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCH
T ss_pred -hccccHHHHHHHH--hHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCH
Confidence 0111111222111 1233444555444432210113335555555433221 1 2345667777653 3456
Q ss_pred eehHHHHHHHHHcCChHHHHHHHHHhhhcCCCCCcccHHHHHhhCCCCChhHHHHHHHHhhccCCcchhhHHHHHHHHcC
Q 046257 348 VSWTAMISGHLQNGAIDLAVNFFCQMTREGVRPNGFTYSIILTAQPAVSPFQVHAHIIKTNYEKSFSVGTALLNAYVKKG 427 (838)
Q Consensus 348 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~y~~~g 427 (838)
..|-..+.-+.+.|+.++|..+|++.... |+...+......+.... ++ +..+...+...
T Consensus 214 ~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~~y~~~~e~~--~~---------------~~~l~~~~~~~- 272 (493)
T 2uy1_A 214 EVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSLYYGLVMDEE--AV---------------YGDLKRKYSMG- 272 (493)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHTTCT--HH---------------HHHHHHHTC---
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHHHHHhhcchh--HH---------------HHHHHHHHHhh-
Confidence 67888888888899999999999999887 65543321111000000 00 11111111000
Q ss_pred CHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHH--HHHHHhcCChhhHHHHHHHHHH
Q 046257 428 ILDEAAKVFELIDEKDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFS--SVINACTAPSAAVEQGKQFHAC 505 (838)
Q Consensus 428 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~--~ll~a~~~~~~~~~~~~~~~~~ 505 (838)
..+.+.. .........|-..+..+.+.+..+.|..+|.+. ... ..+...|. +.+... ..++.+.++.++..
T Consensus 273 ~~~~~~~---~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~--~~~d~~~ar~ife~ 345 (493)
T 2uy1_A 273 EAESAEK---VFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYY--ATGSRATPYNIFSS 345 (493)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHH--HHCCSHHHHHHHHH
T ss_pred ccchhhh---hcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHH--HCCChHHHHHHHHH
Confidence 0000000 000011245666666666677788888888888 211 12222232 111111 11246777777777
Q ss_pred HHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 046257 506 SIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQRKRDLVSWNSMICGYAQHGHTKKALEVFKEMRR 574 (838)
Q Consensus 506 ~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 574 (838)
.++.. +.++..+...++...+.|+.+.|+.+|+++. +....|...+.-=..+|+.+.+.++++++..
T Consensus 346 al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 346 GLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 77653 3344556667777778888888888888874 3566777777766777777777777777664
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.42 E-value=2.2e-06 Score=76.04 Aligned_cols=118 Identities=12% Similarity=0.030 Sum_probs=99.9
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccC-CCchHH
Q 046257 544 RDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEF-DGITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYP-TMEHYS 621 (838)
Q Consensus 544 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~ 621 (838)
.+...|..+...+...|++++|++.|++..+ ..| +...+..+...+...|++++|.++++...+. .| +...+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~ 88 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIK--RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQL---EPTFIKGYT 88 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHT--TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH---CTTCHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCchHHHH
Confidence 3567788899999999999999999999988 455 4567888888899999999999999998753 34 456788
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCC
Q 046257 622 CMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGH 684 (838)
Q Consensus 622 ~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~ 684 (838)
.+..+|.+.|++++|.+.+++. ++++|++...+..++.+|...|+
T Consensus 89 ~la~~~~~~~~~~~A~~~~~~~------------------~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 89 RKAAALEAMKDYTKAMDVYQKA------------------LDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH------------------HHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhhHHHHHHHHHHH------------------HHhCCCchHHHHHHHHHHHHhcC
Confidence 8899999999999999999987 67889899999999999887764
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.41 E-value=6.5e-07 Score=81.83 Aligned_cols=100 Identities=8% Similarity=0.034 Sum_probs=67.1
Q ss_pred CCCCh-hHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccC-CCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHH
Q 046257 577 LEFDG-ITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYP-TMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRT 654 (838)
Q Consensus 577 ~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ 654 (838)
+.|+. ..+..+...+...|++++|...|+..... .| +...|..+..+|.+.|++++|.+.+++.
T Consensus 16 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a----------- 81 (148)
T 2vgx_A 16 ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL---DHYDSRFFLGLGACRQAMGQYDLAIHSYSYG----------- 81 (148)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-----------
T ss_pred CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc---CcccHHHHHHHHHHHHHHhhHHHHHHHHHHH-----------
Confidence 34443 34555556666677777777777666532 33 3445666677777777777777777765
Q ss_pred HHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhh
Q 046257 655 VLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMND 697 (838)
Q Consensus 655 ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~ 697 (838)
++++|+++.++..++.+|...|++++|.+.+++..+
T Consensus 82 -------l~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 82 -------AVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp -------HHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -------HhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 667777777777777777777777777777776654
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.40 E-value=1.7e-06 Score=76.46 Aligned_cols=100 Identities=13% Similarity=0.081 Sum_probs=89.0
Q ss_pred CCCCh-hHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccC-CCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHH
Q 046257 577 LEFDG-ITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYP-TMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRT 654 (838)
Q Consensus 577 ~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ 654 (838)
+.|+. ..+......+.+.|++++|.+.|+..++. .| +...|..+..+|.+.|++++|++.+++.
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a----------- 73 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR---DPENAILYSNRAACLTKLMEFQRALDDCDTC----------- 73 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-----------
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHhhHHHhhccHHHHHHHHHHH-----------
Confidence 56663 56778889999999999999999998843 45 4678888999999999999999999987
Q ss_pred HHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhh
Q 046257 655 VLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMND 697 (838)
Q Consensus 655 ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~ 697 (838)
++++|+++.+|..++.+|...|++++|.+.+++..+
T Consensus 74 -------l~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 74 -------IRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQ 109 (126)
T ss_dssp -------HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -------HHhhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 889999999999999999999999999999998875
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.39 E-value=1.3e-06 Score=92.15 Aligned_cols=129 Identities=12% Similarity=0.015 Sum_probs=111.5
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh----------------hHHHHHHHHHhccCCHHHHHHHHHHHH
Q 046257 545 DLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDG----------------ITFIGVITACTHAGLVDEGQQYFDIMV 608 (838)
Q Consensus 545 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~----------------~t~~~ll~a~~~~g~~~~a~~~~~~m~ 608 (838)
+...|..+...|.+.|++++|++.|++.++ +.|+. .++..+..++...|++++|...|+..+
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 223 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVS--WLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKAL 223 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 456788889999999999999999999998 45654 688889999999999999999999988
Q ss_pred hcCCccC-CCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchH
Q 046257 609 NEHHIYP-TMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQE 687 (838)
Q Consensus 609 ~~~~~~p-~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~ 687 (838)
+. .| +...|..+..+|.+.|++++|.+.+++. ++++|+++.++..++.+|...|++++
T Consensus 224 ~~---~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a------------------l~l~P~~~~a~~~l~~~~~~~~~~~~ 282 (336)
T 1p5q_A 224 EL---DSNNEKGLSRRGEAHLAVNDFELARADFQKV------------------LQLYPNNKAAKTQLAVCQQRIRRQLA 282 (336)
T ss_dssp HH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH------------------HHHCSSCHHHHHHHHHHHHHHHHHHH
T ss_pred Hh---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH------------------HHHCCCCHHHHHHHHHHHHHHHHHHH
Confidence 43 35 4567888999999999999999999987 88999999999999999999999999
Q ss_pred H-HHHHHHHh
Q 046257 688 R-ARVRKLMN 696 (838)
Q Consensus 688 a-~~~~~~m~ 696 (838)
| ...++.|-
T Consensus 283 a~~~~~~~~~ 292 (336)
T 1p5q_A 283 REKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9 44566553
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.38 E-value=2e-06 Score=78.59 Aligned_cols=101 Identities=10% Similarity=0.062 Sum_probs=86.6
Q ss_pred CCCCh-hHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccC-CCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHH
Q 046257 577 LEFDG-ITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYP-TMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRT 654 (838)
Q Consensus 577 ~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ 654 (838)
+.|+. ..+..+...+...|++++|..+|+..... .| +...|..+..+|.+.|++++|.+.+++.
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~a----------- 96 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY---DFYNVDYIMGLAAIYQIKEQFQQAADLYAVA----------- 96 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-----------
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHccHHHHHHHHHHH-----------
Confidence 55654 46777788888999999999999998843 45 4567888999999999999999999987
Q ss_pred HHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 046257 655 VLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMNDR 698 (838)
Q Consensus 655 ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~~ 698 (838)
++++|+++.+|..++.+|...|++++|.+.+++..+.
T Consensus 97 -------l~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 97 -------FALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp -------HHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -------HhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 7899999999999999999999999999999988763
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=9.5e-06 Score=83.40 Aligned_cols=174 Identities=6% Similarity=-0.021 Sum_probs=127.2
Q ss_pred HHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCChhhHHHHHHHHHHHHHhc
Q 046257 431 EAAKVFELIDEKDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFHACSIKAK 510 (838)
Q Consensus 431 ~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~ 510 (838)
.....++.....+...+..+...+.+.|++++|+..|++.... .|+
T Consensus 104 ~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~-------------------------------- 149 (287)
T 3qou_A 104 AIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQ-------------------------------- 149 (287)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTS--------------------------------
T ss_pred HHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCc--------------------------------
Confidence 3344444444344455666777778888888888888877652 333
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCHHHHHH-HHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHH
Q 046257 511 LNNALCVSSALVTMYSKKGNIESASEVFKRQR--KRDLVSWNS-MICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIG 586 (838)
Q Consensus 511 ~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~--~~~~~~~~~-li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ 586 (838)
+...+..|...|.+.|++++|...++++. .|+...+.. ....+...|+.++|++.|++..+ ..|+ ...+..
T Consensus 150 ---~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~--~~P~~~~~~~~ 224 (287)
T 3qou_A 150 ---NGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVA--ENPEDAALATQ 224 (287)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHH--HCTTCHHHHHH
T ss_pred ---chhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHh--cCCccHHHHHH
Confidence 23344456677889999999999999987 455443333 33347778888999999999998 4666 567888
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHhcCCHHHHHHHHhhC
Q 046257 587 VITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDIINRM 643 (838)
Q Consensus 587 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~~m 643 (838)
+..++...|++++|...|..+.+...-..+...+..++.+|...|+.++|...+++.
T Consensus 225 la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~a 281 (287)
T 3qou_A 225 LALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQ 281 (287)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 899999999999999999999854321122557889999999999999999888763
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.37 E-value=4.5e-06 Score=77.37 Aligned_cols=129 Identities=9% Similarity=0.045 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCCchHHHHH
Q 046257 546 LVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEF-DGITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMV 624 (838)
Q Consensus 546 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv 624 (838)
...|..+...+...|++++|+..|++..+. .| +..++..+..++...|++++|..+++...+.. +.+...+..+.
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a 88 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRA 88 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHHHH
Confidence 346777888888999999999999998884 45 45677788888889999999999999887442 22456788888
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHH--HHHHHhcCCchHHHHHHHHHh
Q 046257 625 DLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLL--SNMYAATGHWQERARVRKLMN 696 (838)
Q Consensus 625 ~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l--~~~y~~~g~~~~a~~~~~~m~ 696 (838)
.++.+.|++++|.+.+++. ++++|+++..+..+ +..+...|++++|.+.+....
T Consensus 89 ~~~~~~~~~~~A~~~~~~a------------------~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 89 ASNMALGKFRAALRDYETV------------------VKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHHHTTCHHHHHHHHHHH------------------HHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHH------------------HHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 9999999999999999987 67888888877444 444888899999999887664
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.35 E-value=4.7e-06 Score=73.44 Aligned_cols=119 Identities=11% Similarity=0.025 Sum_probs=98.5
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccC-CCchHHH
Q 046257 545 DLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEF-DGITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYP-TMEHYSC 622 (838)
Q Consensus 545 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~ 622 (838)
+...|..+...+...|++++|++.|++.... .| +...+..+...+...|++++|.++++...+. .| +...+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~ 85 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICI---DPAYSKAYGR 85 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc---CccCHHHHHH
Confidence 3456778888888999999999999998884 45 4567778888888999999999999988743 34 3567788
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCch
Q 046257 623 MVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQ 686 (838)
Q Consensus 623 lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~ 686 (838)
+...+.+.|++++|.+.+++. ++++|+++..+..++.+|...|+++
T Consensus 86 ~~~~~~~~~~~~~A~~~~~~~------------------~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 86 MGLALSSLNKHVEAVAYYKKA------------------LELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH------------------HHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHhCCHHHHHHHHHHH------------------HhcCccchHHHHHHHHHHHHHhcCC
Confidence 889999999999999999987 6788989999999999999888763
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.35 E-value=4.2e-07 Score=87.80 Aligned_cols=153 Identities=8% Similarity=-0.017 Sum_probs=110.2
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh----------------
Q 046257 521 LVTMYSKKGNIESASEVFKRQRK---RDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDG---------------- 581 (838)
Q Consensus 521 li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~---------------- 581 (838)
.+......|++++|.+.++.... .....|..+...+...|++++|++.|++..+ +.|+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~~~~~~~~~~~ 87 (198)
T 2fbn_A 10 HSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALD--FFIHTEEWDDQILLDKKKNIE 87 (198)
T ss_dssp ------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTTTCTTCCCHHHHHHHHHHH
T ss_pred hhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HHhcccccchhhHHHHHHHHH
Confidence 34445566777777777654331 2445688888999999999999999999998 34432
Q ss_pred -hHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccC-CCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 046257 582 -ITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYP-TMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAAC 659 (838)
Q Consensus 582 -~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c 659 (838)
..+..+..++...|++++|...++...+. .| +...+..+..+|...|++++|.+.+++.
T Consensus 88 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a---------------- 148 (198)
T 2fbn_A 88 ISCNLNLATCYNKNKDYPKAIDHASKVLKI---DKNNVKALYKLGVANMYFGFLEEAKENLYKA---------------- 148 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHTCHHHHHHHHHHH----------------
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcccHHHHHHHHHHH----------------
Confidence 57788888999999999999999998854 34 4567888899999999999999999987
Q ss_pred HHhccCCCCchhHHHHHHHHHhcCCchHHH-HHHHHHh
Q 046257 660 RLISLQPHDSAIYVLLSNMYAATGHWQERA-RVRKLMN 696 (838)
Q Consensus 660 ~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~-~~~~~m~ 696 (838)
++++|+++.++..++.++...|+.+++. ..++.|-
T Consensus 149 --l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 149 --ASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMF 184 (198)
T ss_dssp --HHHSTTCHHHHHHHHHHHHHHHHHHC----------
T ss_pred --HHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7889999999999999999998888877 4444443
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.33 E-value=3.7e-06 Score=95.96 Aligned_cols=148 Identities=8% Similarity=-0.000 Sum_probs=109.0
Q ss_pred cCCchHHHHHHHHhhcCCCCCC-HhhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHH
Q 046257 457 IGDTEGAVKIYRQLTSEGVKPN-EFTFSSVINACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESAS 535 (838)
Q Consensus 457 ~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~ 535 (838)
.|++++|++.|++..+. .|+ ...+..+-..+... ++++.+...+...++.. +.+...+..+...|.+.|++++|.
T Consensus 2 ~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~ 77 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRH--RPQDFVAWLMLADAELGM-GDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAA 77 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 57899999999998764 455 45566666666666 99999999999998865 345778888999999999999999
Q ss_pred HHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhcc---CCHHHHHHHHHHHH
Q 046257 536 EVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITACTHA---GLVDEGQQYFDIMV 608 (838)
Q Consensus 536 ~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~---g~~~~a~~~~~~m~ 608 (838)
+.|++.. +.+...|..+...|...|++++|++.|++..+ ..|+ ...+..+..++... |+.++|.+.++...
T Consensus 78 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al 155 (568)
T 2vsy_A 78 VLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQ--LLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAV 155 (568)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 9999765 45778999999999999999999999999999 4565 56788888899999 99999999999988
Q ss_pred hc
Q 046257 609 NE 610 (838)
Q Consensus 609 ~~ 610 (838)
+.
T Consensus 156 ~~ 157 (568)
T 2vsy_A 156 AQ 157 (568)
T ss_dssp HH
T ss_pred hc
Confidence 54
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.33 E-value=5.7e-06 Score=80.45 Aligned_cols=153 Identities=9% Similarity=0.038 Sum_probs=115.4
Q ss_pred HHHHHhcCCHHHHHHHHHhcC--CC-CHHHHHH----------------HHHHHHHcCChHHHHHHHHHHHHcCCCCC-h
Q 046257 522 VTMYSKKGNIESASEVFKRQR--KR-DLVSWNS----------------MICGYAQHGHTKKALEVFKEMRRQDLEFD-G 581 (838)
Q Consensus 522 i~~y~k~g~~~~A~~~f~~~~--~~-~~~~~~~----------------li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~ 581 (838)
...+.+.|++++|...|++.. .| +...|.. +...|...|++++|+..|++.++ +.|+ .
T Consensus 11 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~ 88 (208)
T 3urz_A 11 VSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ--KAPNNV 88 (208)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCH
Confidence 345678899999999998876 33 3456666 88999999999999999999999 5676 5
Q ss_pred hHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCC-CchHHHHHHHHHhcCC--HHHHHHHHhhCCCCCCHHHHHHHHHH
Q 046257 582 ITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPT-MEHYSCMVDLYSRAGM--LEKAMDIINRMPFAASATVWRTVLAA 658 (838)
Q Consensus 582 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~G~--~~~A~~~~~~m~~~~~~~~w~~ll~~ 658 (838)
..+..+..++...|++++|...|+...+. .|+ ...+..+...|...|+ .+++...+++.. .|+..
T Consensus 89 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~-~~~~~-------- 156 (208)
T 3urz_A 89 DCLEACAEMQVCRGQEKDALRMYEKILQL---EADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS-SPTKM-------- 156 (208)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCCHH--------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh-CCCch--------
Confidence 67888899999999999999999999843 464 5678888888876654 445666666652 22221
Q ss_pred HHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 046257 659 CRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMNDR 698 (838)
Q Consensus 659 c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~~ 698 (838)
...+..++..+...|++++|...+++..+.
T Consensus 157 ----------~~a~~~~g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 157 ----------QYARYRDGLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp ----------HHHHHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred ----------hHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 123455677788899999999999988753
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.32 E-value=8.9e-06 Score=76.64 Aligned_cols=156 Identities=13% Similarity=0.035 Sum_probs=112.7
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 046257 446 AWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMY 525 (838)
Q Consensus 446 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y 525 (838)
.+..+...+.+.|++++|+..|++..+. .|+ +...+..+...|
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~-----------------------------------~~~a~~~la~~~ 50 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDE--LQS-----------------------------------RGDVKLAKADCL 50 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHH--HHT-----------------------------------SHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCC-----------------------------------cHHHHHHHHHHH
Confidence 3455666777888888888888877642 233 233444556678
Q ss_pred HhcCCHHHHHHHHHhcC--CCCHHHHHHHHHH-HHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccCCHHHHH
Q 046257 526 SKKGNIESASEVFKRQR--KRDLVSWNSMICG-YAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITACTHAGLVDEGQ 601 (838)
Q Consensus 526 ~k~g~~~~A~~~f~~~~--~~~~~~~~~li~~-~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~ 601 (838)
.+.|++++|...|++.. .|+...+..+... +...+...+|++.|++..+ ..|+ ...+..+..++...|++++|.
T Consensus 51 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~--~~P~~~~~~~~la~~~~~~g~~~~A~ 128 (176)
T 2r5s_A 51 LETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQAAESPELKRLEQELA--ANPDNFELACELAVQYNQVGRDEEAL 128 (176)
T ss_dssp HHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHHTSCHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcccHHHHH
Confidence 88999999999999886 3344433332212 2233344468999999998 5676 567888888999999999999
Q ss_pred HHHHHHHhcCCccCC---CchHHHHHHHHHhcCCHHHHHHHHhhC
Q 046257 602 QYFDIMVNEHHIYPT---MEHYSCMVDLYSRAGMLEKAMDIINRM 643 (838)
Q Consensus 602 ~~~~~m~~~~~~~p~---~~~y~~lv~~l~r~G~~~~A~~~~~~m 643 (838)
..|+.+.+. .|+ ...+..+..+|...|+.++|...+++.
T Consensus 129 ~~~~~~l~~---~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~a 170 (176)
T 2r5s_A 129 ELLWNILKV---NLGAQDGEVKKTFMDILSALGQGNAIASKYRRQ 170 (176)
T ss_dssp HHHHHHHTT---CTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred HHHHHHHHh---CcccChHHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence 999998833 454 447888999999999999999998864
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.31 E-value=3.2e-06 Score=86.67 Aligned_cols=159 Identities=12% Similarity=0.013 Sum_probs=87.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhc
Q 046257 518 SSALVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITACTH 593 (838)
Q Consensus 518 ~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~ 593 (838)
+..+...|.+.|++++|...|++.. +.+...|..+...|...|++++|++.|++..+ +.|+ ...+..+..++..
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~ 84 (281)
T 2c2l_A 7 LKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFLGQCQLE 84 (281)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHH
Confidence 3344445555555555555555443 22455555555555555666666665555555 3443 2344555555555
Q ss_pred cCCHHHHHHHHHHHHhcC-----------------------------CccCCCchHHHHHHHHHhcCCHHHHHHHHhhCC
Q 046257 594 AGLVDEGQQYFDIMVNEH-----------------------------HIYPTMEHYSCMVDLYSRAGMLEKAMDIINRMP 644 (838)
Q Consensus 594 ~g~~~~a~~~~~~m~~~~-----------------------------~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~~m~ 644 (838)
.|++++|...|+...+.. ...++......+..++ .|+.++|.+.+++
T Consensus 85 ~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~~~~~~A~~~~~~-- 160 (281)
T 2c2l_A 85 MESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTRLI--AAERERELEECQR-- 160 (281)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHH--HHHHHHHHTTTSG--
T ss_pred cCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHHHHHHHHHHHh--
Confidence 556666655555544221 1112222222221111 2344444444433
Q ss_pred CCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhc-CCchHHHHHHHHHhhC
Q 046257 645 FAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAAT-GHWQERARVRKLMNDR 698 (838)
Q Consensus 645 ~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~-g~~~~a~~~~~~m~~~ 698 (838)
.++++|++......+..++... +++++|.+++....+.
T Consensus 161 ----------------al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 161 ----------------NHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp ----------------GGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred ----------------hhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 3678898888888888888887 7899999999988653
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.31 E-value=1.4e-05 Score=82.46 Aligned_cols=167 Identities=8% Similarity=-0.018 Sum_probs=119.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcC---CCCH------HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC---CC--hhH
Q 046257 518 SSALVTMYSKKGNIESASEVFKRQR---KRDL------VSWNSMICGYAQHGHTKKALEVFKEMRRQDLE---FD--GIT 583 (838)
Q Consensus 518 ~~~li~~y~k~g~~~~A~~~f~~~~---~~~~------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~---pd--~~t 583 (838)
+...+..|...|++++|.+.+++.. +... ..+..+...|...|++++|++.|++..+.... +. ..+
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 3445677889999999999987543 1121 23444666778889999999999999864222 11 247
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCC-----chHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 046257 584 FIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTM-----EHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAA 658 (838)
Q Consensus 584 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-----~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~ 658 (838)
++.+...+...|++++|..+|+...+.....|+. ..|..+...|.+.|++++|.+.+++.- .-
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal------------~~ 225 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAI------------EI 225 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH------------HH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHH------------HH
Confidence 8888999999999999999999887322222331 478889999999999999999999761 00
Q ss_pred HHHhccCCCCchhHHHHHHHHHhcCCchHH-HHHHHHHh
Q 046257 659 CRLISLQPHDSAIYVLLSNMYAATGHWQER-ARVRKLMN 696 (838)
Q Consensus 659 c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a-~~~~~~m~ 696 (838)
+.-....+.-+..|..++.+|...|++++| ...+++..
T Consensus 226 ~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 226 SCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 000111111266789999999999999999 77666553
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.29 E-value=9.2e-05 Score=75.93 Aligned_cols=146 Identities=10% Similarity=0.139 Sum_probs=116.6
Q ss_pred CCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChH--HHHHHHHHHHHcCCCC-ChhHHHHHHHHHhccCC------
Q 046257 529 GNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTK--KALEVFKEMRRQDLEF-DGITFIGVITACTHAGL------ 596 (838)
Q Consensus 529 g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~--~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~------ 596 (838)
++++++.++++++. ++|..+|+.-.-.+.+.|.++ ++++.++++.+. .| |...|+.-.....+.|.
T Consensus 124 ~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~~ 201 (306)
T 3dra_A 124 FDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDNT 201 (306)
T ss_dssp CCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhhh
Confidence 77889999998876 678899999888888889888 999999999995 44 45566666666666665
Q ss_pred HHHHHHHHHHHHhcCCccC-CCchHHHHHHHHHhcCCHHH-HHHHHhhCCCCCCHHHHHHHHHHHHHhccC---CCCchh
Q 046257 597 VDEGQQYFDIMVNEHHIYP-TMEHYSCMVDLYSRAGMLEK-AMDIINRMPFAASATVWRTVLAACRLISLQ---PHDSAI 671 (838)
Q Consensus 597 ~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~G~~~~-A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~---P~~~~~ 671 (838)
+++++++++.++.. .| |...|+-+..++.+.|+..+ +.++.++. ++++ |.++.+
T Consensus 202 ~~eEl~~~~~aI~~---~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~------------------~~~~~~~~~s~~a 260 (306)
T 3dra_A 202 IDEELNYVKDKIVK---CPQNPSTWNYLLGIHERFDRSITQLEEFSLQF------------------VDLEKDQVTSSFA 260 (306)
T ss_dssp HHHHHHHHHHHHHH---CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTT------------------EEGGGTEESCHHH
T ss_pred HHHHHHHHHHHHHh---CCCCccHHHHHHHHHHhcCCChHHHHHHHHHH------------------HhccCCCCCCHHH
Confidence 89999999988844 35 44567777788888887444 56677776 4444 888999
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHhh
Q 046257 672 YVLLSNMYAATGHWQERARVRKLMND 697 (838)
Q Consensus 672 y~~l~~~y~~~g~~~~a~~~~~~m~~ 697 (838)
+..|+.+|.+.|+.++|.++++.+.+
T Consensus 261 l~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 261 LETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 99999999999999999999999875
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.25 E-value=2.1e-06 Score=78.50 Aligned_cols=118 Identities=9% Similarity=0.092 Sum_probs=86.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccC
Q 046257 517 VSSALVTMYSKKGNIESASEVFKRQRKRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITACTHAG 595 (838)
Q Consensus 517 ~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g 595 (838)
+.+.+.+.....+.++++.++ .+.+...|..+...|.+.|++++|++.|++..+ +.|+ ...|..+..++...|
T Consensus 11 ~~~~l~~~~~~~~~l~~al~l----~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g 84 (151)
T 3gyz_A 11 ISTAVIDAINSGATLKDINAI----PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCI--YDFYNVDYIMGLAAIYQIKE 84 (151)
T ss_dssp HHHHHHHHHHTSCCTGGGCCS----CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCCHHHHhCC----CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHc
Confidence 334455555544443333221 122456778888888899999999999999888 5665 567778888888899
Q ss_pred CHHHHHHHHHHHHhcCCccC-CCchHHHHHHHHHhcCCHHHHHHHHhhC
Q 046257 596 LVDEGQQYFDIMVNEHHIYP-TMEHYSCMVDLYSRAGMLEKAMDIINRM 643 (838)
Q Consensus 596 ~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~G~~~~A~~~~~~m 643 (838)
++++|...|+...+ +.| ++..|..+..+|.+.|++++|.+.+++.
T Consensus 85 ~~~~Ai~~~~~al~---l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~a 130 (151)
T 3gyz_A 85 QFQQAADLYAVAFA---LGKNDYTPVFHTGQCQLRLKAPLKAKECFELV 130 (151)
T ss_dssp CHHHHHHHHHHHHH---HSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHh---hCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999988874 345 4567888888999999999999998876
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.23 E-value=6.4e-06 Score=85.68 Aligned_cols=195 Identities=7% Similarity=-0.013 Sum_probs=139.6
Q ss_pred cCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHH
Q 046257 457 IGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASE 536 (838)
Q Consensus 457 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~ 536 (838)
.|++++|.+++++..+.. +.. + +... ++++.+...+..+ ...|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~~------~---~~~~-~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KTS------F---MKWK-PDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCC------S---SSCS-CCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-ccc------c---cCCC-CCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 567788888888776531 111 0 1112 5566666555443 456888999999999
Q ss_pred HHHhcC-----CCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC---CCC--hhHHHHHHHHHhccCCHHHHHH
Q 046257 537 VFKRQR-----KRD----LVSWNSMICGYAQHGHTKKALEVFKEMRRQDL---EFD--GITFIGVITACTHAGLVDEGQQ 602 (838)
Q Consensus 537 ~f~~~~-----~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---~pd--~~t~~~ll~a~~~~g~~~~a~~ 602 (838)
.|.+.. ..+ ..+|+.+...|...|++++|++.|++..+.-. .|. ..++..+...+.. |++++|..
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 887654 112 35788999999999999999999998876311 122 2467788888888 99999999
Q ss_pred HHHHHHhcCCccCC----CchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCC------chhH
Q 046257 603 YFDIMVNEHHIYPT----MEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHD------SAIY 672 (838)
Q Consensus 603 ~~~~m~~~~~~~p~----~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~------~~~y 672 (838)
+|+.....+.-..+ ...+..+..+|.+.|++++|.+.+++. +++.|++ ...+
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a------------------l~~~~~~~~~~~~~~~~ 198 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKE------------------KSMYKEMENYPTCYKKC 198 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH------------------HHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH------------------HHHHHHcCChhHHHHHH
Confidence 99988743211111 346778899999999999999999986 3333322 2367
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHh
Q 046257 673 VLLSNMYAATGHWQERARVRKLMN 696 (838)
Q Consensus 673 ~~l~~~y~~~g~~~~a~~~~~~m~ 696 (838)
..++.+|...|++++|...+++..
T Consensus 199 ~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 199 IAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHh
Confidence 778888999999999999999876
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.23 E-value=6e-06 Score=79.59 Aligned_cols=160 Identities=12% Similarity=-0.025 Sum_probs=112.8
Q ss_pred HhcCCHHHHHH---HHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc----CCCCC-hhHHHHHHHHHhccCCH
Q 046257 526 SKKGNIESASE---VFKRQRKRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQ----DLEFD-GITFIGVITACTHAGLV 597 (838)
Q Consensus 526 ~k~g~~~~A~~---~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~pd-~~t~~~ll~a~~~~g~~ 597 (838)
...|++++|.+ .+..-+......|+.+...|...|++++|+..|++..+. |..|. ..++..+...+...|++
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 35789999999 665533445678999999999999999999999988762 22222 35677788889999999
Q ss_pred HHHHHHHHHHHhcCCccC-C----CchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhH
Q 046257 598 DEGQQYFDIMVNEHHIYP-T----MEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIY 672 (838)
Q Consensus 598 ~~a~~~~~~m~~~~~~~p-~----~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y 672 (838)
++|..+++.......-.+ + ...+..+...+...|++++|.+.+++.- ..++-..-.+.-...+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al------------~~~~~~~~~~~~~~~~ 150 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSL------------VYAQQADDQVAIACAF 150 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH------------HHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH------------HHHHhccchHHHHHHH
Confidence 999999998764422122 1 2347778899999999999999998751 0000000000012346
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHhh
Q 046257 673 VLLSNMYAATGHWQERARVRKLMND 697 (838)
Q Consensus 673 ~~l~~~y~~~g~~~~a~~~~~~m~~ 697 (838)
..++.+|...|++++|.+.+++..+
T Consensus 151 ~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 151 RGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 7899999999999999998887754
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.22 E-value=8.5e-06 Score=73.64 Aligned_cols=94 Identities=10% Similarity=0.018 Sum_probs=66.5
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhcCCccC-CCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHH
Q 046257 583 TFIGVITACTHAGLVDEGQQYFDIMVNEHHIYP-TMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRL 661 (838)
Q Consensus 583 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~ 661 (838)
.+..+...+...|++++|..+|+..... .| +...|..+..+|.+.|++++|.+.+++.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a------------------ 78 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCML---DHYDARYFLGLGACRQSLGLYEQALQSYSYG------------------ 78 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH------------------
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHHhhHHHHHHHHHHH------------------
Confidence 3445555666677777777777766632 34 3445666777777788888888887776
Q ss_pred hccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhh
Q 046257 662 ISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMND 697 (838)
Q Consensus 662 ~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~ 697 (838)
++++|+++..+..++.+|...|++++|.+.++...+
T Consensus 79 l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 79 ALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 677788888888888888888888888887777654
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.21 E-value=5.1e-06 Score=83.27 Aligned_cols=198 Identities=9% Similarity=-0.000 Sum_probs=133.9
Q ss_pred HcCCHHHHHHHHHhcCCC---CcchHHHH-------HHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHH-HHHhcCCh
Q 046257 425 KKGILDEAAKVFELIDEK---DIVAWSAM-------LAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSV-INACTAPS 493 (838)
Q Consensus 425 ~~g~~~~A~~~f~~~~~~---~~~~~~~l-------i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l-l~a~~~~~ 493 (838)
..++.+.|.+.|.+..+- ....|+.+ ...+.+.++..+++..+..-. ++.|+......- ...|...
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l--~l~p~~l~a~~~~~g~y~~~- 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSV--QISMSTLNARIAIGGLYGDI- 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTT--TCCGGGGCCEEECCTTTCCC-
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHh--cCChhhhhhhhccCCccccc-
Confidence 579999999999988753 34578777 455555555555555554433 344544321111 0000000
Q ss_pred hhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 046257 494 AAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQR--KRDLVSWNSMICGYAQHGHTKKALEVFKE 571 (838)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 571 (838)
+.-+..-..+.-.+..++...|++++|.++|+.+. .|+-.....+...+.+.|++++|+..|++
T Consensus 95 --------------~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~ 160 (282)
T 4f3v_A 95 --------------TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKS 160 (282)
T ss_dssp --------------EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred --------------ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 00011112344456677889999999999999987 44434677777789999999999999986
Q ss_pred HHHcCCCCCh----hHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCC--CchHHHHHHHHHhcCCHHHHHHHHhhC
Q 046257 572 MRRQDLEFDG----ITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPT--MEHYSCMVDLYSRAGMLEKAMDIINRM 643 (838)
Q Consensus 572 m~~~g~~pd~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~y~~lv~~l~r~G~~~~A~~~~~~m 643 (838)
... .|+. ..+..+..++...|+.++|+..|++.. .....|. .+.......++.+.|+.++|...|+++
T Consensus 161 a~~---~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~-~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a 234 (282)
T 4f3v_A 161 AGK---WPDKFLAGAAGVAHGVAAANLALFTEAERRLTEAN-DSPAGEACARAIAWYLAMARRSQGNESAAVALLEWL 234 (282)
T ss_dssp GGG---CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-TSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hhc---cCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHh-cCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 544 2332 367778889999999999999999986 3222253 235566788899999999999999987
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.21 E-value=1.1e-05 Score=76.10 Aligned_cols=119 Identities=10% Similarity=0.145 Sum_probs=85.1
Q ss_pred HHcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccC-CCchHHHHHHH-HHhcCCH
Q 046257 557 AQHGHTKKALEVFKEMRRQDLEF-DGITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYP-TMEHYSCMVDL-YSRAGML 633 (838)
Q Consensus 557 ~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~-l~r~G~~ 633 (838)
...|++++|++.|++..+. .| +...+..+...+...|++++|..+|+...+. .| +...+..+..+ +.+.|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~la~~l~~~~~~~ 95 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL---RGENAELYAALATVLYYQASQH 95 (177)
T ss_dssp C-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HCSCHHHHHHHHHHHHHHTTTC
T ss_pred hhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhcCCc
Confidence 3456777777777777763 34 3456677777777778888888887777633 23 34556667777 6678887
Q ss_pred --HHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 046257 634 --EKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMNDR 698 (838)
Q Consensus 634 --~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~~ 698 (838)
++|.+.++++ ++++|+++..+..++.+|...|++++|...+++..+.
T Consensus 96 ~~~~A~~~~~~a------------------l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 96 MTAQTRAMIDKA------------------LALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp CCHHHHHHHHHH------------------HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHH------------------HHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 8888888876 6778888888888888999999999998888887654
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=5.3e-06 Score=75.66 Aligned_cols=105 Identities=15% Similarity=0.075 Sum_probs=83.0
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccC-CCchHHH
Q 046257 545 DLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYP-TMEHYSC 622 (838)
Q Consensus 545 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~ 622 (838)
+...|..+...+...|++++|+..|++... ..|+ ...+..+..++...|++++|...|+..... .| +...+..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~ 94 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCV--LDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM---DIXEPRFPFH 94 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCTHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHH--cCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc---CCCCchHHHH
Confidence 455677788888899999999999999888 4564 566777888888899999999999888743 34 4567778
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhH
Q 046257 623 MVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIY 672 (838)
Q Consensus 623 lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y 672 (838)
+..+|...|++++|.+.+++. ++++|+++...
T Consensus 95 lg~~~~~~g~~~~A~~~~~~a------------------l~~~p~~~~~~ 126 (148)
T 2vgx_A 95 AAECLLQXGELAEAESGLFLA------------------QELIANXPEFX 126 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH------------------HHHHTTCGGGH
T ss_pred HHHHHHHcCCHHHHHHHHHHH------------------HHHCcCCCcch
Confidence 888999999999999999876 67777666553
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.18 E-value=9.2e-06 Score=71.52 Aligned_cols=93 Identities=11% Similarity=0.039 Sum_probs=57.1
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhcCCccC-CCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHh
Q 046257 584 FIGVITACTHAGLVDEGQQYFDIMVNEHHIYP-TMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLI 662 (838)
Q Consensus 584 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~ 662 (838)
+..+...+...|++++|...|+...+. .| +...|..+..+|.+.|++++|.+.+++. +
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a------------------l 65 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKR---APEDARGYSNRAAALAKLMSFPEAIADCNKA------------------I 65 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH------------------H
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHhcCHHHHHHHHHHH------------------H
Confidence 344444455555555555555555422 22 2345566666666777777777777665 5
Q ss_pred ccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhh
Q 046257 663 SLQPHDSAIYVLLSNMYAATGHWQERARVRKLMND 697 (838)
Q Consensus 663 ~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~ 697 (838)
+++|+++..|..++.+|...|++++|...+++..+
T Consensus 66 ~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 66 EKDPNFVRAYIRKATAQIAVKEYASALETLDAART 100 (126)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 66777777777777777777777777777766654
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.16 E-value=1.8e-05 Score=71.51 Aligned_cols=115 Identities=12% Similarity=0.109 Sum_probs=92.2
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC----hhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccC-CCc
Q 046257 544 RDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD----GITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYP-TME 618 (838)
Q Consensus 544 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~ 618 (838)
.+...|..+...+...|++++|++.|++..+ ..|+ ...+..+..++...|++++|..+++...+. .| +..
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~ 100 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALG--LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK---DGGDVK 100 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHT--SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---TSCCHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh---CccCHH
Confidence 4667788888889999999999999999888 5676 466777888888999999999999888743 34 455
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHh
Q 046257 619 HYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAA 681 (838)
Q Consensus 619 ~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~ 681 (838)
.+..+..+|.+.|++++|.+.+++. ++++|+++..+..+..+...
T Consensus 101 ~~~~~a~~~~~~~~~~~A~~~~~~a------------------l~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 101 ALYRRSQALEKLGRLDQAVLDLQRC------------------VSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHH------------------HHHCSSCHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH------------------HHcCCCcHHHHHHHHHHHhh
Confidence 6778888999999999999999876 67788887777776666543
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.14 E-value=4.8e-06 Score=92.32 Aligned_cols=120 Identities=9% Similarity=0.057 Sum_probs=91.8
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccC-CCchHHHHHHHHHh
Q 046257 552 MICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYP-TMEHYSCMVDLYSR 629 (838)
Q Consensus 552 li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r 629 (838)
+...|.+.|++++|++.|++..+ ..|+ ..++..+..++...|++++|.+.+++..+. .| +...|..+..+|.+
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~lg~~~~~ 86 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIE--LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL---DKKYIKGYYRRAASNMA 86 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS---CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHH
Confidence 34455677888888888888888 4565 567778888888888888888888888743 34 34677888889999
Q ss_pred cCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHH--HHhcCCchHHHHHHHH
Q 046257 630 AGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNM--YAATGHWQERARVRKL 694 (838)
Q Consensus 630 ~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~--y~~~g~~~~a~~~~~~ 694 (838)
.|++++|++.+++. ++++|+++..+..++.+ |...|++++|.+.+++
T Consensus 87 ~g~~~eA~~~~~~a------------------l~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 87 LGKFRAALRDYETV------------------VKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HTCHHHHHHHHHHH------------------HHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred cCCHHHHHHHHHHH------------------HHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 99999999999887 77889898888888888 8888999999988773
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.14 E-value=2.5e-05 Score=67.15 Aligned_cols=111 Identities=14% Similarity=0.060 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccC-CCchHHHH
Q 046257 546 LVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEF-DGITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYP-TMEHYSCM 623 (838)
Q Consensus 546 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~l 623 (838)
...|..+...+...|++++|++.|++.... .| +...+..+...+...|++++|..+++...+. .| +...+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~ 78 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL---KPDWGKGYSRK 78 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh---CcccHHHHHHH
Confidence 456777888888888999999998888874 45 4566777777888889999999988888743 34 35567778
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHH
Q 046257 624 VDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMY 679 (838)
Q Consensus 624 v~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y 679 (838)
..++.+.|++++|.+.+++. ++++|+++..+..++.+.
T Consensus 79 a~~~~~~~~~~~A~~~~~~~------------------~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 79 AAALEFLNRFEEAKRTYEEG------------------LKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHHHHHTTCHHHHHHHHHHH------------------HTTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHH------------------HHcCCCCHHHHHHHHHhh
Confidence 88899999999999998876 677777777776666553
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.12 E-value=0.00052 Score=70.28 Aligned_cols=216 Identities=9% Similarity=-0.033 Sum_probs=159.4
Q ss_pred HccCChHHHHHHHHHHHHcCCCCCcccHHHHHHHhccCC--ChhhHHHHHHHHHHhCCCCChhHHHHHHHHH----HhC-
Q 046257 54 CRDSLHQEALNLFLGIRRLGLPLFGSTLSSVLKTCGCLF--DHVFGRQVHCECVKSGFARDVNVSTSLVDLY----MRT- 126 (838)
Q Consensus 54 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y----~~~- 126 (838)
......++|+.+++.++... |-+...|+.--......+ +++++....+.++...+ .+..+|+.--..+ .+.
T Consensus 44 ~~~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nP-k~y~aW~~R~~iL~~~~~~l~ 121 (306)
T 3dra_A 44 KAEEYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNE-KNYQIWNYRQLIIGQIMELNN 121 (306)
T ss_dssp HTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCT-TCCHHHHHHHHHHHHHHHHTT
T ss_pred HcCCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHhcc
Confidence 34445578999999998764 333445666656666677 99999999999988763 4555666554444 455
Q ss_pred --CChHHHHHHHccCCC---CCcchHHHHHHHHHhCCCch--HHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCC-----
Q 046257 127 --NNVEDGRRVFDDMNE---SNVVSWTSLLSGYARNKMND--RVLELFHRMQVEGIKPNSFTFSTVLGVLADEGI----- 194 (838)
Q Consensus 127 --g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~--~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~----- 194 (838)
++++++...++.+.+ +|..+|+--.-.+.+.|.++ ++++.++++.+..+. |...|+.-...+...+.
T Consensus 122 ~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~ 200 (306)
T 3dra_A 122 NDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDN 200 (306)
T ss_dssp TCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHH
T ss_pred ccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhh
Confidence 789999999988764 56778888888888888888 999999999887654 66777776666666665
Q ss_pred -hHHHHHHHHHHHHhCCCCchhHHHHHHHHhHcCCChhH-HHHHHhcCCC------CCcchHHHHHHHHHhCCChHHHHH
Q 046257 195 -VATAVQVHTMVIKNGGEVVTSVCNALISMYLKSKMVRD-ARAVFDGMED------RDSITWNSMVAGYVTNELHMEAFE 266 (838)
Q Consensus 195 -~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~-A~~~f~~m~~------~~~~~~n~li~~~~~~g~~~~A~~ 266 (838)
++++.+....+++.. +.|...|+-+-..+.+.|+... +..+++++.+ ++...+..+...|.+.|+.++|++
T Consensus 201 ~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~ 279 (306)
T 3dra_A 201 TIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRT 279 (306)
T ss_dssp HHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 788888888888876 6778888888888888877444 4455555432 355667777778888888888888
Q ss_pred HHHHhhh
Q 046257 267 TFNNMGL 273 (838)
Q Consensus 267 l~~~m~~ 273 (838)
+++.+.+
T Consensus 280 ~~~~l~~ 286 (306)
T 3dra_A 280 VYDLLKS 286 (306)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 8888764
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.12 E-value=6.9e-05 Score=73.72 Aligned_cols=133 Identities=11% Similarity=0.049 Sum_probs=99.3
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh----hHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCC-ch
Q 046257 545 DLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDG----ITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTM-EH 619 (838)
Q Consensus 545 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~ 619 (838)
+...+..+...+...|++++|+..|+++.+. .|+. ..+..+..++...|++++|...|+...+.+.-.|.. ..
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a 80 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYV 80 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHH
Confidence 3445667788899999999999999999984 4542 467778889999999999999999998654222221 13
Q ss_pred HHHHHHHHHh------------------cCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchh----------
Q 046257 620 YSCMVDLYSR------------------AGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAI---------- 671 (838)
Q Consensus 620 y~~lv~~l~r------------------~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~---------- 671 (838)
+..+...+.+ .|++++|.+.+++. ++..|+++..
T Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~------------------l~~~P~~~~a~~a~~~l~~~ 142 (225)
T 2yhc_A 81 MYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKL------------------VRGYPNSQYTTDATKRLVFL 142 (225)
T ss_dssp HHHHHHHHHHHHC--------------CCHHHHHHHHHHHHH------------------HTTCTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHH------------------HHHCcCChhHHHHHHHHHHH
Confidence 3344444443 67899999999876 4444444433
Q ss_pred -------HHHHHHHHHhcCCchHHHHHHHHHhh
Q 046257 672 -------YVLLSNMYAATGHWQERARVRKLMND 697 (838)
Q Consensus 672 -------y~~l~~~y~~~g~~~~a~~~~~~m~~ 697 (838)
...++.+|...|++++|...++.+.+
T Consensus 143 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~ 175 (225)
T 2yhc_A 143 KDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLR 175 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 35788999999999999999999876
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.11 E-value=2.8e-05 Score=71.86 Aligned_cols=122 Identities=10% Similarity=0.039 Sum_probs=98.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHh
Q 046257 517 VSSALVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITACT 592 (838)
Q Consensus 517 ~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~ 592 (838)
.+..+...|...|++++|...|++.. +.+...|..+...|...|++++|++.|++..+. .|+ ..++..+..++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHH
Confidence 44556677889999999999998765 457889999999999999999999999999984 454 567888888999
Q ss_pred ccCCHHHHHHHHHHHHhcCCccCCC-chH--HHHHHHHHhcCCHHHHHHHHhhC
Q 046257 593 HAGLVDEGQQYFDIMVNEHHIYPTM-EHY--SCMVDLYSRAGMLEKAMDIINRM 643 (838)
Q Consensus 593 ~~g~~~~a~~~~~~m~~~~~~~p~~-~~y--~~lv~~l~r~G~~~~A~~~~~~m 643 (838)
..|++++|.++|+...+. .|+. ..+ ..++..+.+.|++++|.+.+++.
T Consensus 93 ~~~~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKV---KPHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 999999999999998854 3432 333 33445577889999999998764
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.10 E-value=7e-06 Score=77.35 Aligned_cols=125 Identities=9% Similarity=0.100 Sum_probs=92.7
Q ss_pred HhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHH-HhccCCH--H
Q 046257 526 SKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITA-CTHAGLV--D 598 (838)
Q Consensus 526 ~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a-~~~~g~~--~ 598 (838)
...|++++|...|++.. +.+...|..+...|...|++++|++.|++..+ +.|+ ...+..+..+ +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQ--LRGENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHhcCCcchH
Confidence 45677888887777654 45778888899999999999999999999888 4454 4566667777 6788888 9
Q ss_pred HHHHHHHHHHhcCCccCC-CchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHH
Q 046257 599 EGQQYFDIMVNEHHIYPT-MEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYV 673 (838)
Q Consensus 599 ~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~ 673 (838)
+|..+|+.+.+. .|+ ...+..+...|.+.|++++|.+.++++ ++++|+++....
T Consensus 99 ~A~~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a------------------l~~~p~~~~~~~ 153 (177)
T 2e2e_A 99 QTRAMIDKALAL---DSNEITALMLLASDAFMQANYAQAIELWQKV------------------MDLNSPRINRTQ 153 (177)
T ss_dssp HHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH------------------HHTCCTTSCHHH
T ss_pred HHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcccHHHHHHHHHHH------------------HhhCCCCccHHH
Confidence 999999888744 343 456777888899999999999999876 677777665443
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.07 E-value=2e-05 Score=87.32 Aligned_cols=113 Identities=12% Similarity=0.083 Sum_probs=91.3
Q ss_pred HHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccCCHHH
Q 046257 524 MYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITACTHAGLVDE 599 (838)
Q Consensus 524 ~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~ 599 (838)
.|.+.|++++|.+.|++.. +.+..+|..+..+|.+.|++++|++.|++..+ +.|+ ..++..+..++...|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIE--LDKKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHH
Confidence 4678899999999998765 45688999999999999999999999999999 5676 5678888999999999999
Q ss_pred HHHHHHHHHhcCCccCC-CchHHHHHHH--HHhcCCHHHHHHHHh
Q 046257 600 GQQYFDIMVNEHHIYPT-MEHYSCMVDL--YSRAGMLEKAMDIIN 641 (838)
Q Consensus 600 a~~~~~~m~~~~~~~p~-~~~y~~lv~~--l~r~G~~~~A~~~~~ 641 (838)
|.+.|++..+. .|+ ...+..+..+ +.+.|++++|.+.++
T Consensus 93 A~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKV---KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHH---STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999998854 343 4556666655 888999999999998
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.04 E-value=0.0013 Score=72.75 Aligned_cols=335 Identities=10% Similarity=-0.021 Sum_probs=187.1
Q ss_pred hhhHHhhccCC--CCCcccHHHHHHHHHccCC-hHHHHHHHHHHHHc-CC-CCCcccHHHHHHHhcc----CCChhhHHH
Q 046257 29 KKDQSLFDRSP--QRNFVEYNRLLFEYCRDSL-HQEALNLFLGIRRL-GL-PLFGSTLSSVLKTCGC----LFDHVFGRQ 99 (838)
Q Consensus 29 ~~a~~~f~~~~--~~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~-g~-~~~~~~~~~ll~~~~~----~~~~~~a~~ 99 (838)
+.++.+|.+.- .|++-.|..-+.-..+.+. .+....+|+..... |. +.+...|...+..+.. .++.+.++.
T Consensus 31 e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~ 110 (493)
T 2uy1_A 31 RSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRN 110 (493)
T ss_dssp HHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHH
Confidence 45556666532 2555566665554444442 23445566655543 32 2233445555554432 234556666
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHHHh-------------CCChHHHHHHHccCCC----CCcchHHHHHHHHHhCCC---
Q 046257 100 VHCECVKSGFARDVNVSTSLVDLYMR-------------TNNVEDGRRVFDDMNE----SNVVSWTSLLSGYARNKM--- 159 (838)
Q Consensus 100 ~~~~~~~~g~~~~~~~~~~li~~y~~-------------~g~~~~A~~~f~~m~~----~~~~~~~~li~~~~~~g~--- 159 (838)
+++.++......-...|......-.. .+.+..|+.+++.+.. .+...|...+.--..++.
T Consensus 111 iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~ 190 (493)
T 2uy1_A 111 GYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLG 190 (493)
T ss_dssp HHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCC
T ss_pred HHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCc
Confidence 66666653211111222222111100 0112222333222111 122345554444322211
Q ss_pred ----chHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHcCCChhHH-H
Q 046257 160 ----NDRVLELFHRMQVEGIKPNSFTFSTVLGVLADEGIVATAVQVHTMVIKNGGEVVTSVCNALISMYLKSKMVRDA-R 234 (838)
Q Consensus 160 ----~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A-~ 234 (838)
.+.+..+|+++.... +.+...|...+..+...|+.+.|+.+++.+++. +.+...+.. |+...+.++. .
T Consensus 191 ~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~~~ 263 (493)
T 2uy1_A 191 GRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAVYG 263 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHHHH
T ss_pred chhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHHHH
Confidence 234567888877643 334666777777778889999999999999988 444444332 2222122221 1
Q ss_pred HHHhcCC------------CCCcchHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhc-cCcHHHHHH
Q 046257 235 AVFDGME------------DRDSITWNSMVAGYVTNELHMEAFETFNNMGLAGAELTRSTFVSVIKLCAT-TKELRLARQ 301 (838)
Q Consensus 235 ~~f~~m~------------~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~-~~~~~~a~~ 301 (838)
.+.+... ......|-..+....+.+..+.|..+|.+. ... ..+...|......-.. .++.+.|+.
T Consensus 264 ~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ 341 (493)
T 2uy1_A 264 DLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYN 341 (493)
T ss_dssp HHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHH
T ss_pred HHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHH
Confidence 1222110 001245777777777788899999999988 321 1233334321111111 236999999
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHHhcccCCCeeehHHHHHHHHHcCChHHHHHHHHHhhh
Q 046257 302 LHSQVLKNGIDFDHNIRTGLMVAYSKCGKMEDASKIFSMMREMKDVVSWTAMISGHLQNGAIDLAVNFFCQMTR 375 (838)
Q Consensus 302 ~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 375 (838)
+|+..++.. +.+...+...++...+.|+.+.|+.+|+.+. .....|...+..=...|+.+.+..+++++..
T Consensus 342 ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 342 IFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999998874 3345566778888889999999999999985 3566788888877888999999998888875
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.04 E-value=2.9e-05 Score=70.09 Aligned_cols=108 Identities=16% Similarity=0.084 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccC-CCchHHHH
Q 046257 546 LVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYP-TMEHYSCM 623 (838)
Q Consensus 546 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~l 623 (838)
...+..+...+.+.|++++|+..|++... ..|+ ...+..+..++...|++++|...|+..... .| ++..+..+
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l 92 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCM--LDHYDARYFLGLGACRQSLGLYEQALQSYSYGALM---DINEPRFPFHA 92 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCTHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc---CCCCcHHHHHH
Confidence 34566677778888888888888888887 4554 456777777788888888888888887743 34 44567777
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHH
Q 046257 624 VDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLS 676 (838)
Q Consensus 624 v~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~ 676 (838)
..+|...|++++|.+.+++. ++++|+++.......
T Consensus 93 g~~~~~~g~~~~A~~~~~~a------------------l~~~p~~~~~~~~~~ 127 (142)
T 2xcb_A 93 AECHLQLGDLDGAESGFYSA------------------RALAAAQPAHEALAA 127 (142)
T ss_dssp HHHHHHTTCHHHHHHHHHHH------------------HHHHHTCGGGHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHH------------------HHhCCCCcchHHHHH
Confidence 88888888888888888876 566676666554443
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.04 E-value=3.1e-05 Score=71.86 Aligned_cols=109 Identities=9% Similarity=0.015 Sum_probs=89.8
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCC-CchHHH
Q 046257 545 DLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPT-MEHYSC 622 (838)
Q Consensus 545 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~ 622 (838)
+...|..+...|...|++++|++.|++.++ +.|+ ...+..+..++...|++++|...|+..++. .|+ ...|..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~ 84 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALS--IAPANPIYLSNRAAAYSASGQHEKAAEDAELATVV---DPKYSKAWSR 84 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCCHHHHHH
Confidence 456788888899999999999999999988 4564 567888888899999999999999988743 354 567888
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHH
Q 046257 623 MVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLS 676 (838)
Q Consensus 623 lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~ 676 (838)
+..+|.+.|++++|.+.+++. ++++|+++..+...+
T Consensus 85 lg~~~~~~g~~~~A~~~~~~a------------------l~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 85 LGLARFDMADYKGAKEAYEKG------------------IEAEGNGGSDAMKRG 120 (164)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH------------------HHHHSSSCCHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHH------------------HHhCCCchHHHHHHH
Confidence 899999999999999999987 788898888665544
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.03 E-value=2.9e-05 Score=68.25 Aligned_cols=93 Identities=10% Similarity=0.034 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCC-CchHHHH
Q 046257 546 LVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPT-MEHYSCM 623 (838)
Q Consensus 546 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~l 623 (838)
...|..+...+.+.|++++|++.|++..+ ..|+ ...+..+..++...|++++|...|+...+. .|+ ...|..+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~l 78 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIK--RAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEK---DPNFVRAYIRK 78 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCcHHHHHHH
Confidence 34577777888888888888888888888 4454 567778888888888888888888888743 343 4567778
Q ss_pred HHHHHhcCCHHHHHHHHhhC
Q 046257 624 VDLYSRAGMLEKAMDIINRM 643 (838)
Q Consensus 624 v~~l~r~G~~~~A~~~~~~m 643 (838)
..+|...|++++|.+.+++.
T Consensus 79 g~~~~~~~~~~~A~~~~~~a 98 (126)
T 3upv_A 79 ATAQIAVKEYASALETLDAA 98 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhCHHHHHHHHHHH
Confidence 88888899999999888876
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.02 E-value=2.9e-05 Score=68.47 Aligned_cols=92 Identities=11% Similarity=0.027 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCC--------
Q 046257 547 VSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTM-------- 617 (838)
Q Consensus 547 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-------- 617 (838)
..|..+...|.+.|++++|++.|++.++ +.|+ ..+|..+..++...|++++|.+.|+..++. .|+.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~--~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~~a 83 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIE--LDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEV---GRETRADYKLIA 83 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HHHTTCCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHh---CcccchhhHHHH
Confidence 4577788889999999999999999988 5676 466788888899999999999999887732 2321
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHhhC
Q 046257 618 EHYSCMVDLYSRAGMLEKAMDIINRM 643 (838)
Q Consensus 618 ~~y~~lv~~l~r~G~~~~A~~~~~~m 643 (838)
..|..+...+...|++++|++.+++.
T Consensus 84 ~~~~~lg~~~~~~~~~~~A~~~~~ka 109 (127)
T 4gcn_A 84 KAMSRAGNAFQKQNDLSLAVQWFHRS 109 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 24666788889999999999999876
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.01 E-value=0.00018 Score=74.01 Aligned_cols=167 Identities=12% Similarity=0.016 Sum_probs=117.5
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 046257 446 AWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMY 525 (838)
Q Consensus 446 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y 525 (838)
.+...+..+...|++++|++.+.+..+.... +.... ..+ ..+..+...|
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~~-~~~-----------------------------~~~~~~~~~~ 125 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQ-QFL-----------------------------QWQYYVAAYV 125 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHHH-HHH-----------------------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccC-ChhHH-HHH-----------------------------HHHHHHHHHH
Confidence 3455677788899999999999887664211 11110 000 0112244567
Q ss_pred HhcCCHHHHHHHHHhcCC-----CC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHc-CCCCC-----hhHHHHHHHH
Q 046257 526 SKKGNIESASEVFKRQRK-----RD----LVSWNSMICGYAQHGHTKKALEVFKEMRRQ-DLEFD-----GITFIGVITA 590 (838)
Q Consensus 526 ~k~g~~~~A~~~f~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~pd-----~~t~~~ll~a 590 (838)
...|++++|...|++... .+ ..+|+.+...|...|++++|++.|++..+. ...|+ ..++..+..+
T Consensus 126 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~ 205 (293)
T 2qfc_A 126 LKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKA 205 (293)
T ss_dssp HTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHH
Confidence 888999999999876531 12 358999999999999999999999998731 01233 1578888999
Q ss_pred HhccCCHHHHHHHHHHHHhcC---CccCC-CchHHHHHHHHHhcCCHHHH-HHHHhhC
Q 046257 591 CTHAGLVDEGQQYFDIMVNEH---HIYPT-MEHYSCMVDLYSRAGMLEKA-MDIINRM 643 (838)
Q Consensus 591 ~~~~g~~~~a~~~~~~m~~~~---~~~p~-~~~y~~lv~~l~r~G~~~~A-~~~~~~m 643 (838)
|...|++++|..+++...+.. +.... ...|..+...|.+.|++++| ...+++.
T Consensus 206 y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 206 LYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 999999999999999876331 11111 34678889999999999999 7777765
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.00 E-value=0.00016 Score=70.37 Aligned_cols=172 Identities=14% Similarity=0.037 Sum_probs=133.4
Q ss_pred hhHHhhccC-CCCCcccHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcccHHHHHHHhccCC----ChhhHHHHHHHH
Q 046257 30 KDQSLFDRS-PQRNFVEYNRLLFEYCRDSLHQEALNLFLGIRRLGLPLFGSTLSSVLKTCGCLF----DHVFGRQVHCEC 104 (838)
Q Consensus 30 ~a~~~f~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~----~~~~a~~~~~~~ 104 (838)
+|.+.|.+. ...+...+..|-..|...+++++|+..|++..+.| +...+..+-..+.. + +.++|...+...
T Consensus 4 eA~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A 79 (212)
T 3rjv_A 4 EPGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKA 79 (212)
T ss_dssp CTTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHH
Confidence 455556554 23577788888888989999999999999998876 45666667777766 6 899999999988
Q ss_pred HHhCCCCChhHHHHHHHHHHh----CCChHHHHHHHccCCCCC-----cchHHHHHHHHHh----CCCchHHHHHHHHHH
Q 046257 105 VKSGFARDVNVSTSLVDLYMR----TNNVEDGRRVFDDMNESN-----VVSWTSLLSGYAR----NKMNDRVLELFHRMQ 171 (838)
Q Consensus 105 ~~~g~~~~~~~~~~li~~y~~----~g~~~~A~~~f~~m~~~~-----~~~~~~li~~~~~----~g~~~~A~~l~~~m~ 171 (838)
.+.| ++..+..|-.+|.. .+++++|...|+...+.+ +.++..|-..|.. .+++++|+..|++..
T Consensus 80 ~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 80 VEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 7765 56777788888877 789999999999877643 5788888888888 788999999999987
Q ss_pred HCCCCCChhhHHHHHHHHhc------CCChHHHHHHHHHHHHhCC
Q 046257 172 VEGIKPNSFTFSTVLGVLAD------EGIVATAVQVHTMVIKNGG 210 (838)
Q Consensus 172 ~~g~~p~~~t~~~ll~~~~~------~g~~~~a~~l~~~~~~~g~ 210 (838)
+. ..+...+..|-..+.. ..+.++|...+....+.|.
T Consensus 157 ~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 157 SL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred Hc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 76 2344566666666643 2388999999999988873
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=97.99 E-value=9.8e-05 Score=64.04 Aligned_cols=112 Identities=17% Similarity=0.265 Sum_probs=89.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 046257 515 LCVSSALVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGITFIGVITAC 591 (838)
Q Consensus 515 ~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~ 591 (838)
...+..+...|.+.|++++|.+.|+++. +.+..+|..+...|...|++++|+..|+++.+.. +.+..++..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 87 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 4566778888999999999999998875 4567889999999999999999999999999853 23466788889999
Q ss_pred hccCCHHHHHHHHHHHHhcCCccCC-CchHHHHHHHHHhc
Q 046257 592 THAGLVDEGQQYFDIMVNEHHIYPT-MEHYSCMVDLYSRA 630 (838)
Q Consensus 592 ~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~ 630 (838)
...|++++|..+|+.+.+. .|+ ...+..+..++.+.
T Consensus 88 ~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALEL---DPNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHhc
Confidence 9999999999999998743 343 34455555555443
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.99 E-value=2.7e-05 Score=85.81 Aligned_cols=129 Identities=11% Similarity=0.039 Sum_probs=105.5
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh----------------hHHHHHHHHHhccCCHHHHHHHHHHHH
Q 046257 545 DLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDG----------------ITFIGVITACTHAGLVDEGQQYFDIMV 608 (838)
Q Consensus 545 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~----------------~t~~~ll~a~~~~g~~~~a~~~~~~m~ 608 (838)
....|..+...|.+.|++++|+..|++.++ +.|+. ..|..+..++.+.|++++|...++..+
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~--~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 344 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVS--WLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKAL 344 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--HhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 345788888899999999999999999988 45553 678888899999999999999999988
Q ss_pred hcCCccC-CCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchH
Q 046257 609 NEHHIYP-TMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQE 687 (838)
Q Consensus 609 ~~~~~~p-~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~ 687 (838)
+. .| +...|..+..+|.+.|++++|++.|+++ ++++|++..++..++.++...|++++
T Consensus 345 ~~---~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~a------------------l~l~P~~~~a~~~l~~~~~~~~~~~~ 403 (457)
T 1kt0_A 345 GL---DSANEKGLYRRGEAQLLMNEFESAKGDFEKV------------------LEVNPQNKAARLQISMCQKKAKEHNE 403 (457)
T ss_dssp HH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHH------------------HTTC----CHHHHHHHHHHHHHHHHH
T ss_pred hc---CCccHHHHHHHHHHHHHccCHHHHHHHHHHH------------------HHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 43 34 4567888899999999999999999987 89999999999999999999999998
Q ss_pred HHH-HHHHHh
Q 046257 688 RAR-VRKLMN 696 (838)
Q Consensus 688 a~~-~~~~m~ 696 (838)
+.+ .++.|-
T Consensus 404 a~~~~~~~~f 413 (457)
T 1kt0_A 404 RDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHC-
T ss_pred HHHHHHHHHH
Confidence 874 445553
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.96 E-value=4.1e-05 Score=65.11 Aligned_cols=97 Identities=11% Similarity=0.029 Sum_probs=69.3
Q ss_pred hHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHH
Q 046257 582 ITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRL 661 (838)
Q Consensus 582 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~ 661 (838)
..+..+...+...|++++|..+|+...+.. +.+...+..+..++.+.|++++|.+.+++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a------------------ 66 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLD--PEESKYWLMKGKALYNLERYEEAVDCYNYV------------------ 66 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH------------------
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHccCHHHHHHHHHHH------------------
Confidence 345556666667777777777777666332 123445667777788888888888888776
Q ss_pred hccCCC--CchhHHHHHHHHHhc-CCchHHHHHHHHHhhC
Q 046257 662 ISLQPH--DSAIYVLLSNMYAAT-GHWQERARVRKLMNDR 698 (838)
Q Consensus 662 ~~l~P~--~~~~y~~l~~~y~~~-g~~~~a~~~~~~m~~~ 698 (838)
++++|+ ++..+..++.+|... |++++|.+.++...+.
T Consensus 67 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 67 INVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHTSCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHhCcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence 677777 788888888888888 8888888888877654
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.93 E-value=9.6e-05 Score=63.37 Aligned_cols=97 Identities=15% Similarity=0.127 Sum_probs=84.7
Q ss_pred hhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccC-CCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 046257 581 GITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYP-TMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAAC 659 (838)
Q Consensus 581 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c 659 (838)
...+..+...+...|++++|..+|+..... .| +...+..+...+.+.|++++|.+.+++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~---------------- 64 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKL---DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKT---------------- 64 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH----------------
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHhhccHHHHHHHHHHH----------------
Confidence 345677788889999999999999998854 34 5567888899999999999999999987
Q ss_pred HHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 046257 660 RLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMNDR 698 (838)
Q Consensus 660 ~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~~ 698 (838)
++++|+++..+..++.+|...|++++|.+.++...+.
T Consensus 65 --~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 65 --VDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp --HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred --HHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 7789999999999999999999999999999988753
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.92 E-value=2.7e-05 Score=68.02 Aligned_cols=93 Identities=12% Similarity=0.001 Sum_probs=67.8
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhcCCccC-CCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHh
Q 046257 584 FIGVITACTHAGLVDEGQQYFDIMVNEHHIYP-TMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLI 662 (838)
Q Consensus 584 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~ 662 (838)
+..+...+...|++++|...|+..++. .| +...|..+..++.+.|++++|++.+++. +
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a------------------l 78 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQK---EPEREEAWRSLGLTQAENEKDGLAIIALNHA------------------R 78 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHH------------------H
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH------------------H
Confidence 444555666777777777777777633 34 3456666777778888888888888776 6
Q ss_pred ccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhh
Q 046257 663 SLQPHDSAIYVLLSNMYAATGHWQERARVRKLMND 697 (838)
Q Consensus 663 ~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~ 697 (838)
+++|+++.++..|+.+|...|++++|...+++..+
T Consensus 79 ~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 79 MLDPKDIAVHAALAVSHTNEHNANAALASLRAWLL 113 (121)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77888888888888888888888888888777654
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=97.91 E-value=5.9e-05 Score=67.17 Aligned_cols=96 Identities=10% Similarity=0.039 Sum_probs=66.7
Q ss_pred hhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccC-CCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 046257 581 GITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYP-TMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAAC 659 (838)
Q Consensus 581 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c 659 (838)
...+..+...+...|++++|..+|+..... .| +...|..+..+|.+.|++++|.+.+++.
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a---------------- 69 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRA---------------- 69 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH----------------
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhh---CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHH----------------
Confidence 445555666666666666666666665532 23 2445666777777788888888777766
Q ss_pred HHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhh
Q 046257 660 RLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMND 697 (838)
Q Consensus 660 ~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~ 697 (838)
++++|+++..+..++.+|...|++++|...+++..+
T Consensus 70 --l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 70 --LELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp --HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --HHhCchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 667777788888888888888888888887777654
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.90 E-value=0.00012 Score=66.08 Aligned_cols=97 Identities=8% Similarity=-0.094 Sum_probs=85.7
Q ss_pred ChhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCC----CchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHH
Q 046257 580 DGITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPT----MEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTV 655 (838)
Q Consensus 580 d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~l 655 (838)
+...+..+...+...|++++|.++|+...+ ..|+ ...+..+...|.+.|++++|.+.+++.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~------------ 91 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKA------------ 91 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHH------------
Confidence 345677888899999999999999999873 3566 567888899999999999999999987
Q ss_pred HHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhh
Q 046257 656 LAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMND 697 (838)
Q Consensus 656 l~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~ 697 (838)
++++|+++..+..++.+|...|++++|...+++..+
T Consensus 92 ------~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 92 ------IEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp ------HHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ------HhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 678999999999999999999999999999998865
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.88 E-value=4.9e-05 Score=69.57 Aligned_cols=139 Identities=14% Similarity=0.104 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-CCh----hHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCC----C
Q 046257 547 VSWNSMICGYAQHGHTKKALEVFKEMRRQDLE-FDG----ITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPT----M 617 (838)
Q Consensus 547 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-pd~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~ 617 (838)
.+|..+...|...|++++|++.|++..+..-. ++. .++..+...+...|++++|..+++.......-.++ .
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 34666666777777777777777776653111 111 35666667777778888888877776532111111 3
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhh
Q 046257 618 EHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMND 697 (838)
Q Consensus 618 ~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~ 697 (838)
..+..+...+...|++++|.+.+++.- ..+.-....|.....+..++.+|...|++++|.+.+++..+
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~------------~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHL------------AIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHH------------HHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 356677788888999999988887651 00000011122345678899999999999999998887653
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=97.88 E-value=0.00051 Score=70.51 Aligned_cols=156 Identities=10% Similarity=-0.047 Sum_probs=110.4
Q ss_pred HHHHhHcCCChhHHHHHHhcCCCCC---c-----c-hHHHHHHHHHhCCChHHHHHHHHHhhhCCCC-CCh----hhHHH
Q 046257 220 LISMYLKSKMVRDARAVFDGMEDRD---S-----I-TWNSMVAGYVTNELHMEAFETFNNMGLAGAE-LTR----STFVS 285 (838)
Q Consensus 220 li~~y~~~g~~~~A~~~f~~m~~~~---~-----~-~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~----~t~~~ 285 (838)
.+..+...|++++|..++++..+.. . . .+..+...+...|++++|++.|++....... ++. .+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 4666778888888888887754321 1 1 2234556666777889999999888764322 222 25777
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHh-----CCCC-ChhHHHHHHHHHHcCCChHHHHHHHHhccc----CCC----eeehH
Q 046257 286 VIKLCATTKELRLARQLHSQVLKN-----GIDF-DHNIRTGLMVAYSKCGKMEDASKIFSMMRE----MKD----VVSWT 351 (838)
Q Consensus 286 ll~~~~~~~~~~~a~~~~~~~~~~-----g~~~-~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~----~~~----~~~~~ 351 (838)
+...+...|+++.|...+..+++. +..+ ...++..+...|.+.|++++|...+++..+ ..+ ...|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 888888889999999988888742 1111 234777888899999999999998887653 111 34678
Q ss_pred HHHHHHHHcCC-hHHHHHHHHHhhh
Q 046257 352 AMISGHLQNGA-IDLAVNFFCQMTR 375 (838)
Q Consensus 352 ~li~~~~~~g~-~~~A~~l~~~m~~ 375 (838)
.+...|.+.|+ +++|.+.|++...
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 88888999995 6999999888765
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=97.87 E-value=7.3e-05 Score=71.75 Aligned_cols=130 Identities=16% Similarity=0.053 Sum_probs=95.5
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCC---------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-CCC-C--
Q 046257 514 ALCVSSALVTMYSKKGNIESASEVFKRQRK---------RDLVSWNSMICGYAQHGHTKKALEVFKEMRRQD-LEF-D-- 580 (838)
Q Consensus 514 ~~~~~~~li~~y~k~g~~~~A~~~f~~~~~---------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p-d-- 580 (838)
...++..+...|...|++++|...|++... ....+|+.+...|...|++++|++.|++..+.- -.+ +
T Consensus 25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 104 (203)
T 3gw4_A 25 ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPL 104 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHH
Confidence 344556677778889999999888876542 134578888899999999999999999877630 022 2
Q ss_pred --hhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCC----CchHHHHHHHHHhcCCHHHHHHHHhhC
Q 046257 581 --GITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPT----MEHYSCMVDLYSRAGMLEKAMDIINRM 643 (838)
Q Consensus 581 --~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~y~~lv~~l~r~G~~~~A~~~~~~m 643 (838)
...+..+...+...|++++|..+++.......-.++ ...+..+..++.+.|++++|.+.+++.
T Consensus 105 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 173 (203)
T 3gw4_A 105 AASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRA 173 (203)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 245777788888999999999999887632111112 223577889999999999999998875
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.87 E-value=2e-05 Score=75.79 Aligned_cols=126 Identities=7% Similarity=0.026 Sum_probs=91.2
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCC--------------
Q 046257 552 MICGYAQHGHTKKALEVFKEMRRQDLEF-DGITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPT-------------- 616 (838)
Q Consensus 552 li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-------------- 616 (838)
.+.+....|++++|.+.|+.-.+. .+ ....+..+...+...|++++|..+|+...+...-.|+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~ 87 (198)
T 2fbn_A 10 HSSGRENLYFQGAKKSIYDYTDEE--KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIE 87 (198)
T ss_dssp ------------CCCSGGGCCHHH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHH
T ss_pred hhhhhhhhhhccccCchhhCCHHH--HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHH
Confidence 344555567777777776543321 22 2345777788889999999999999998854322221
Q ss_pred CchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHh
Q 046257 617 MEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMN 696 (838)
Q Consensus 617 ~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~ 696 (838)
...|..+..+|.+.|++++|.+.+++. ++++|+++.++..++.+|...|++++|.+.+++..
T Consensus 88 ~~~~~~la~~~~~~~~~~~A~~~~~~a------------------l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 149 (198)
T 2fbn_A 88 ISCNLNLATCYNKNKDYPKAIDHASKV------------------LKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAA 149 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH------------------HHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHH------------------HHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 157788889999999999999999987 78899999999999999999999999999999886
Q ss_pred h
Q 046257 697 D 697 (838)
Q Consensus 697 ~ 697 (838)
+
T Consensus 150 ~ 150 (198)
T 2fbn_A 150 S 150 (198)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.87 E-value=2.5e-05 Score=82.31 Aligned_cols=128 Identities=13% Similarity=0.075 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChh------------------HHHHHHHHHhccCCHHHHHHHHHHHHh
Q 046257 548 SWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGI------------------TFIGVITACTHAGLVDEGQQYFDIMVN 609 (838)
Q Consensus 548 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~------------------t~~~ll~a~~~~g~~~~a~~~~~~m~~ 609 (838)
.|..+...|.+.|++++|+..|++.++ +.|+.. .|..+..++.+.|++++|...++...+
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 258 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIA--YMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLT 258 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHH--HSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH--HhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455566666677777777777777666 345543 677788888899999999999988874
Q ss_pred cCCccC-CCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHH-HHhcCCchH
Q 046257 610 EHHIYP-TMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNM-YAATGHWQE 687 (838)
Q Consensus 610 ~~~~~p-~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~-y~~~g~~~~ 687 (838)
. .| +...|..+..+|...|++++|++.+++. ++++|+++.++..|..+ ....+..++
T Consensus 259 ~---~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~a------------------l~l~p~~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 259 E---EEKNPKALFRRGKAKAELGQMDSARDDFRKA------------------QKYAPDDKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp H---CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHT------------------TC-------------------------
T ss_pred h---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH------------------HHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3 35 4567888889999999999999999988 78888888888888888 445566777
Q ss_pred HHHHHHHHhhC
Q 046257 688 RARVRKLMNDR 698 (838)
Q Consensus 688 a~~~~~~m~~~ 698 (838)
+.++++.|-..
T Consensus 318 a~~~~~~~l~~ 328 (338)
T 2if4_A 318 QKEMYKGIFKG 328 (338)
T ss_dssp -----------
T ss_pred HHHHHHHhhCC
Confidence 77777777543
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.86 E-value=6.2e-05 Score=66.36 Aligned_cols=100 Identities=11% Similarity=0.116 Sum_probs=81.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh--------hHHH
Q 046257 517 VSSALVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDG--------ITFI 585 (838)
Q Consensus 517 ~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~--------~t~~ 585 (838)
.+.-|...|.+.|++++|.+.|++.. +.+...|+.+..+|...|++++|++.|++.++ +.|+. .+|.
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVE--VGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHH--hCcccchhhHHHHHHHH
Confidence 34457778999999999999999765 55788999999999999999999999999987 33432 3677
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhcCCccCCCchHH
Q 046257 586 GVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYS 621 (838)
Q Consensus 586 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~ 621 (838)
.+..++...|++++|.+.|+..... .|+++...
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~---~~~~~~~~ 120 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSE---FRDPELVK 120 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH---SCCHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh---CcCHHHHH
Confidence 7788889999999999999988743 46665543
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=97.86 E-value=0.00018 Score=62.85 Aligned_cols=114 Identities=11% Similarity=-0.003 Sum_probs=93.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHH
Q 046257 515 LCVSSALVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITA 590 (838)
Q Consensus 515 ~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a 590 (838)
...+..+...|...|++++|...|++.. +.+...|..+...|...|++++|++.+++..+. .|+ ...+..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICI--DPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc--CccCHHHHHHHHHH
Confidence 4455667778899999999999998765 457888999999999999999999999999984 555 5678888889
Q ss_pred HhccCCHHHHHHHHHHHHhcCCccC-CCchHHHHHHHHHhcCCH
Q 046257 591 CTHAGLVDEGQQYFDIMVNEHHIYP-TMEHYSCMVDLYSRAGML 633 (838)
Q Consensus 591 ~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~G~~ 633 (838)
+...|++++|..+|+...+. .| +...+..+..++.+.|++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALEL---DPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHhc---CccchHHHHHHHHHHHHHhcC
Confidence 99999999999999998744 34 445667777788777764
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.86 E-value=7.1e-05 Score=69.14 Aligned_cols=130 Identities=12% Similarity=0.122 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC------CCCChhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccC-CCc
Q 046257 546 LVSWNSMICGYAQHGHTKKALEVFKEMRRQD------LEFDGITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYP-TME 618 (838)
Q Consensus 546 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g------~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~ 618 (838)
...|......+.+.|++++|++.|++.++.- -.|+...+ ..+ .| +..
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~--------------------~~~------~~~~~~ 64 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEW--------------------VEL------DRKNIP 64 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHH--------------------HHH------HHTHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHH--------------------HHH------HHHHHH
Confidence 3467777777888888888888887776620 01111100 000 12 234
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 046257 619 HYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMNDR 698 (838)
Q Consensus 619 ~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~~ 698 (838)
.|..+..+|.+.|++++|...+++. ++++|+++.+|..++.+|...|++++|...+++..+.
T Consensus 65 ~~~nla~~~~~~~~~~~A~~~~~~a------------------l~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 65 LYANMSQCYLNIGDLHEAEETSSEV------------------LKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHH------------------HHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHH------------------HhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 6788889999999999999999987 7899999999999999999999999999999988652
Q ss_pred CCccCCceeEEEECCEEEEEeeCCCCCCChH-HHHHHHHHHHHHHHHc
Q 046257 699 KVKKEAGYSWIEVKNKTYSFLAGDISHPQSN-QIYSKLEELSTRLKDA 745 (838)
Q Consensus 699 g~~~~~~~s~i~~~~~~~~f~~~~~~~~~~~-~i~~~l~~l~~~~~~~ 745 (838)
.|... .+...+..+...+++.
T Consensus 127 --------------------------~p~~~~~~~~~l~~~~~~~~~~ 148 (162)
T 3rkv_A 127 --------------------------HPAAASVVAREMKIVTERRAEK 148 (162)
T ss_dssp --------------------------CGGGHHHHHHHHHHHHHHHHHH
T ss_pred --------------------------CCCCHHHHHHHHHHHHHHHHHH
Confidence 35555 6777777777766543
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=97.86 E-value=0.00036 Score=71.18 Aligned_cols=146 Identities=4% Similarity=-0.061 Sum_probs=111.6
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCC-CchHHH
Q 046257 545 DLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPT-MEHYSC 622 (838)
Q Consensus 545 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~ 622 (838)
+...|..+...|...|++++|++.|++..+ ..|+ ...+..+..++...|++++|...++...+ +.|+ ...+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~ 77 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAIT--RNPLVAVYYTNRALCYLKMQQPEQALADCRRALE---LDGQSVKAHFF 77 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SCTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---hCCCCHHHHHH
Confidence 456788899999999999999999999999 4664 66788888899999999999999999873 4454 567888
Q ss_pred HHHHHHhcCCHHHHHHHHhhC----C---CCCCHHHHHHHHHHHH------HhccCCCCchhHHHHHHHHHhcCCchHHH
Q 046257 623 MVDLYSRAGMLEKAMDIINRM----P---FAASATVWRTVLAACR------LISLQPHDSAIYVLLSNMYAATGHWQERA 689 (838)
Q Consensus 623 lv~~l~r~G~~~~A~~~~~~m----~---~~~~~~~w~~ll~~c~------~~~l~P~~~~~y~~l~~~y~~~g~~~~a~ 689 (838)
+..+|.+.|++++|.+.+++. | ..-+..+|..+..+-. .....|.++.....+..++ .|++++|.
T Consensus 78 lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~~~~~~A~ 155 (281)
T 2c2l_A 78 LGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTRLI--AAEREREL 155 (281)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHH--HHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHHHHHHH
Confidence 999999999999999999875 2 1112345555533311 3345677888877777665 68888888
Q ss_pred HHHHHHhh
Q 046257 690 RVRKLMND 697 (838)
Q Consensus 690 ~~~~~m~~ 697 (838)
+.++...+
T Consensus 156 ~~~~~al~ 163 (281)
T 2c2l_A 156 EECQRNHE 163 (281)
T ss_dssp TTTSGGGT
T ss_pred HHHHhhhc
Confidence 77665543
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=97.85 E-value=7.6e-05 Score=66.46 Aligned_cols=96 Identities=3% Similarity=-0.098 Sum_probs=67.2
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccC-CCchH
Q 046257 543 KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYP-TMEHY 620 (838)
Q Consensus 543 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y 620 (838)
..+...|..+...+...|++++|+..|++..+. .|+ ...+..+..++...|++++|...++...+. .| +...+
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~ 80 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL---DGQSVKAH 80 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CchhHHHH
Confidence 345666777777777777777777777777773 444 456666777777777777777777777643 23 34566
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhC
Q 046257 621 SCMVDLYSRAGMLEKAMDIINRM 643 (838)
Q Consensus 621 ~~lv~~l~r~G~~~~A~~~~~~m 643 (838)
..+..+|...|++++|.+.+++.
T Consensus 81 ~~l~~~~~~~~~~~~A~~~~~~a 103 (137)
T 3q49_B 81 FFLGQCQLEMESYDEAIANLQRA 103 (137)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHH
Confidence 67777777788888887777765
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=97.85 E-value=8.3e-05 Score=65.22 Aligned_cols=114 Identities=6% Similarity=0.051 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcc-CC----CchH
Q 046257 547 VSWNSMICGYAQHGHTKKALEVFKEMRRQDLEF-DGITFIGVITACTHAGLVDEGQQYFDIMVNEHHIY-PT----MEHY 620 (838)
Q Consensus 547 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~-p~----~~~y 620 (838)
..|..+...|...|++++|+..|++..+. .| +...+..+...+...|++++|..+++.......-. ++ ...+
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 46777888888889999999999888884 34 45667777888888899999999888877432111 11 4567
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHh
Q 046257 621 SCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAA 681 (838)
Q Consensus 621 ~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~ 681 (838)
..+..+|.+.|++++|.+.++++ +++.| ++.....+..++..
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~------------------~~~~~-~~~~~~~l~~~~~~ 124 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKS------------------LAEHR-TPDVLKKCQQAEKI 124 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH------------------HHHCC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHH------------------HHhCC-CHHHHHHHHHHHHH
Confidence 78889999999999999999876 55566 55555555554443
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.84 E-value=0.00017 Score=63.48 Aligned_cols=115 Identities=10% Similarity=-0.030 Sum_probs=93.1
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHH
Q 046257 513 NALCVSSALVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVI 588 (838)
Q Consensus 513 ~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll 588 (838)
.+...+..+...|.+.|++++|.+.|++.. +.+...|..+...|...|++++|++.|++..+. .|+ ...+..+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la 91 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQL--EPTFIKGYTRKA 91 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCchHHHHHHH
Confidence 345666777888999999999999999865 447788999999999999999999999999984 454 56788888
Q ss_pred HHHhccCCHHHHHHHHHHHHhcCCccC-CCchHHHHHHHHHhcCC
Q 046257 589 TACTHAGLVDEGQQYFDIMVNEHHIYP-TMEHYSCMVDLYSRAGM 632 (838)
Q Consensus 589 ~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~G~ 632 (838)
.++...|++++|.++|+...+. .| +...+..+..++.+.|+
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDL---DSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH---CGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHhhHHHHHHHHHHHHHh---CCCchHHHHHHHHHHHHhcC
Confidence 8999999999999999998743 34 34556666777766553
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.84 E-value=0.00016 Score=63.41 Aligned_cols=88 Identities=11% Similarity=0.071 Sum_probs=60.0
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCChh----HHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCC----CchHHH
Q 046257 551 SMICGYAQHGHTKKALEVFKEMRRQDLEFDGI----TFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPT----MEHYSC 622 (838)
Q Consensus 551 ~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~----t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~y~~ 622 (838)
.+...+...|++++|++.|++..+. .|+.. .+..+..++...|++++|...|+...+.. |+ ...+..
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~---p~~~~~~~~~~~ 81 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLEL--YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY---PTHDKAAGGLLK 81 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTSTTHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHH--CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC---CCCcccHHHHHH
Confidence 4455666777777777777777773 34432 56666667777788888888777776432 33 334566
Q ss_pred HHHHHHhcCCHHHHHHHHhhC
Q 046257 623 MVDLYSRAGMLEKAMDIINRM 643 (838)
Q Consensus 623 lv~~l~r~G~~~~A~~~~~~m 643 (838)
+..+|.+.|++++|.+.++++
T Consensus 82 la~~~~~~g~~~~A~~~~~~~ 102 (129)
T 2xev_A 82 LGLSQYGEGKNTEAQQTLQQV 102 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHH
Confidence 677777888888888887766
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=97.81 E-value=0.0033 Score=65.07 Aligned_cols=223 Identities=12% Similarity=0.006 Sum_probs=151.7
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcccHHHHHHHhccCC-ChhhHHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 046257 46 YNRLLFEYCRDSLHQEALNLFLGIRRLGLPLFGSTLSSVLKTCGCLF-DHVFGRQVHCECVKSGFARDVNVSTSLVDLYM 124 (838)
Q Consensus 46 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 124 (838)
|+.+-......+..++|+.++++++... +-+..+|+.--......+ .++++....+.++... +.+..+|+.---.+.
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~ 134 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLD 134 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 4444444556666788999999999864 333444555555555566 5999999999988765 456778887777776
Q ss_pred hC-C-ChHHHHHHHccCCC---CCcchHHHHHHHHHhCCCch--------HHHHHHHHHHHCCCCCChhhHHHHHHHHhc
Q 046257 125 RT-N-NVEDGRRVFDDMNE---SNVVSWTSLLSGYARNKMND--------RVLELFHRMQVEGIKPNSFTFSTVLGVLAD 191 (838)
Q Consensus 125 ~~-g-~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~--------~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~ 191 (838)
+. + +++++...++.+.+ +|..+|+--.-.+.+.|.++ ++++.++++.+..+. |...|+.....+.+
T Consensus 135 ~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~ 213 (349)
T 3q7a_A 135 RISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVS 213 (349)
T ss_dssp HHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTT
T ss_pred HhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHh
Confidence 66 6 88999999998876 45567777665555555566 899999999887643 77788888877777
Q ss_pred CCC-------hHHHHHHHHHHHHhCCCCchhHHHHHHHHhHcCCCh--------------------hHHHHHHhcCCC--
Q 046257 192 EGI-------VATAVQVHTMVIKNGGEVVTSVCNALISMYLKSKMV--------------------RDARAVFDGMED-- 242 (838)
Q Consensus 192 ~g~-------~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~--------------------~~A~~~f~~m~~-- 242 (838)
.+. ++++.+....+++.. +.|...|+-+-..+.+.|+. ........++..
T Consensus 214 l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (349)
T 3q7a_A 214 RPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDP 292 (349)
T ss_dssp STTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-C
T ss_pred ccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcc
Confidence 775 678888888888876 66788888877777776654 223333333322
Q ss_pred -------CCcchHHHHHHHHHhCCChHHHHHHHHHhh
Q 046257 243 -------RDSITWNSMVAGYVTNELHMEAFETFNNMG 272 (838)
Q Consensus 243 -------~~~~~~n~li~~~~~~g~~~~A~~l~~~m~ 272 (838)
++...+..+...|...|+.++|.++++.+.
T Consensus 293 ~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~ 329 (349)
T 3q7a_A 293 LPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLS 329 (349)
T ss_dssp CCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 233345556666666666666666666654
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.80 E-value=0.00018 Score=60.89 Aligned_cols=93 Identities=10% Similarity=-0.031 Sum_probs=63.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC---hhHHHHHH
Q 046257 515 LCVSSALVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD---GITFIGVI 588 (838)
Q Consensus 515 ~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd---~~t~~~ll 588 (838)
...+..+...|.+.|++++|...|++.. +.+...|..+...|...|++++|++.|++..+ ..|+ ...+..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~~l~ 83 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVIN--VIEDEYNKDVWAAKA 83 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TSCCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCcccchHHHHHHHH
Confidence 3444556666777777777777776654 34566677777777777777777777777776 3444 45566666
Q ss_pred HHHhcc-CCHHHHHHHHHHHHh
Q 046257 589 TACTHA-GLVDEGQQYFDIMVN 609 (838)
Q Consensus 589 ~a~~~~-g~~~~a~~~~~~m~~ 609 (838)
.++... |++++|.++++....
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGG
T ss_pred HHHHHHhCCHHHHHHHHHHHhh
Confidence 677777 777777777777663
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.78 E-value=7.6e-05 Score=79.51 Aligned_cols=123 Identities=9% Similarity=0.052 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHc--------------CCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHHHhcC
Q 046257 547 VSWNSMICGYAQHGHTKKALEVFKEMRRQ--------------DLEFD-GITFIGVITACTHAGLVDEGQQYFDIMVNEH 611 (838)
Q Consensus 547 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~--------------g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 611 (838)
..|..+...|.+.|++++|++.|++.++. ...|+ ..+|..+..++.+.|++++|.++++...+
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~-- 301 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALE-- 301 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH--
Confidence 34667777888888888888888877751 12333 45788888899999999999999999883
Q ss_pred CccC-CCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHH
Q 046257 612 HIYP-TMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERAR 690 (838)
Q Consensus 612 ~~~p-~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~ 690 (838)
+.| +...|..+..+|.+.|++++|.+.+++. ++++|++..++..++.++...|+.+++.+
T Consensus 302 -~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~A------------------l~l~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 302 -IDPSNTKALYRRAQGWQGLKEYDQALADLKKA------------------QEIAPEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp -TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH------------------HHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -hCchhHHHHHHHHHHHHHccCHHHHHHHHHHH------------------HHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 345 4567888899999999999999999987 78899999999999999999988888765
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=97.77 E-value=0.00014 Score=76.47 Aligned_cols=124 Identities=14% Similarity=0.071 Sum_probs=102.8
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcC--CC-C---------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 046257 515 LCVSSALVTMYSKKGNIESASEVFKRQR--KR-D---------------LVSWNSMICGYAQHGHTKKALEVFKEMRRQD 576 (838)
Q Consensus 515 ~~~~~~li~~y~k~g~~~~A~~~f~~~~--~~-~---------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 576 (838)
...+..+...|.+.|++++|...|++.. .| + ...|..+..+|.+.|++++|++.|++.++
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~-- 224 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE-- 224 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--
Confidence 3455667778899999999999998765 33 3 58899999999999999999999999999
Q ss_pred CCCC-hhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccC-CCchHHHHHHHHHhcCCHHHHH-HHHhhC
Q 046257 577 LEFD-GITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYP-TMEHYSCMVDLYSRAGMLEKAM-DIINRM 643 (838)
Q Consensus 577 ~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~G~~~~A~-~~~~~m 643 (838)
+.|+ ...+..+..++...|++++|...|+...+. .| +...+..+..++.+.|+.++|. +.+++|
T Consensus 225 ~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l---~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 225 LDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL---YPNNKAAKTQLAVCQQRIRRQLAREKKLYANM 291 (336)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4565 567888999999999999999999998843 45 4567888899999999999994 456655
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=97.77 E-value=0.00018 Score=66.58 Aligned_cols=95 Identities=7% Similarity=0.022 Sum_probs=82.6
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHH
Q 046257 514 ALCVSSALVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVIT 589 (838)
Q Consensus 514 ~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~ 589 (838)
+...+..+...|.+.|++++|.+.|++.. +.+...|..+...|...|++++|++.|++.++ +.|+ ...+..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATV--VDPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 34556667788999999999999999875 45788999999999999999999999999999 5666 567888999
Q ss_pred HHhccCCHHHHHHHHHHHHhc
Q 046257 590 ACTHAGLVDEGQQYFDIMVNE 610 (838)
Q Consensus 590 a~~~~g~~~~a~~~~~~m~~~ 610 (838)
++...|++++|...|+...+.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh
Confidence 999999999999999998844
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.76 E-value=6.7e-05 Score=65.45 Aligned_cols=90 Identities=6% Similarity=-0.090 Sum_probs=47.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccC-CCchHHHHHHH
Q 046257 549 WNSMICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYP-TMEHYSCMVDL 626 (838)
Q Consensus 549 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~ 626 (838)
|..+...+.+.|++++|+..|++..+ ..|+ ...+..+..++...|++++|...|++..+ +.| +...+..+..+
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~---l~P~~~~~~~~la~~ 94 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQ--KEPEREEAWRSLGLTQAENEKDGLAIIALNHARM---LDPKDIAVHAALAVS 94 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHH
Confidence 33444455555666666666665555 3443 33444555555555666666666655542 223 23345555555
Q ss_pred HHhcCCHHHHHHHHhhC
Q 046257 627 YSRAGMLEKAMDIINRM 643 (838)
Q Consensus 627 l~r~G~~~~A~~~~~~m 643 (838)
|.+.|++++|.+.+++.
T Consensus 95 ~~~~g~~~~A~~~~~~a 111 (121)
T 1hxi_A 95 HTNEHNANAALASLRAW 111 (121)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHH
Confidence 66666666666666554
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.75 E-value=0.00021 Score=62.72 Aligned_cols=93 Identities=14% Similarity=0.107 Sum_probs=79.5
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCC----chHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 046257 584 FIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTM----EHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAAC 659 (838)
Q Consensus 584 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~----~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c 659 (838)
+..+...+...|++++|...|+...+.. |+. ..+..+...+.+.|++++|.+.+++.
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~---p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~---------------- 65 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELY---PNGVYTPNALYWLGESYYATRNFQLAEAQFRDL---------------- 65 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC---SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH----------------
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHC---CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHH----------------
Confidence 3345667788999999999999988543 443 36777889999999999999999987
Q ss_pred HHhccCCCC---chhHHHHHHHHHhcCCchHHHHHHHHHhh
Q 046257 660 RLISLQPHD---SAIYVLLSNMYAATGHWQERARVRKLMND 697 (838)
Q Consensus 660 ~~~~l~P~~---~~~y~~l~~~y~~~g~~~~a~~~~~~m~~ 697 (838)
++..|++ +.++..++.+|...|++++|...++...+
T Consensus 66 --~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 66 --VSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp --HHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --HHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6788988 77899999999999999999999998875
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.75 E-value=4.2e-05 Score=69.17 Aligned_cols=108 Identities=10% Similarity=-0.022 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC--------h-----hHHHHHHHHHhccCCHHHHHHHHHHHHhc----
Q 046257 548 SWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD--------G-----ITFIGVITACTHAGLVDEGQQYFDIMVNE---- 610 (838)
Q Consensus 548 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd--------~-----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~---- 610 (838)
.|......+.+.|++++|++.|++.++ +.|+ . ..|..+..++...|++++|...++..++.
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~--l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAME--ISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH--HHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHh--hCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 456667778888899999999988888 5565 1 27888888888999999999998888742
Q ss_pred CCccCCC-chH----HHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHH
Q 046257 611 HHIYPTM-EHY----SCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLL 675 (838)
Q Consensus 611 ~~~~p~~-~~y----~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l 675 (838)
..+.|+- ..| .....+|...|++++|++.|++. ++++|+|.+++--+
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kA------------------lel~p~d~~~~~~~ 142 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKV------------------VEMIEERKGETPGK 142 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH------------------HHHHHHCCSCCTTH
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHH------------------HhcCCCcHHHHHHH
Confidence 1125653 456 77889999999999999999987 88999888765433
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.75 E-value=8.1e-05 Score=68.77 Aligned_cols=111 Identities=8% Similarity=0.012 Sum_probs=58.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhc
Q 046257 515 LCVSSALVTMYSKKGNIESASEVFKRQRKRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITACTH 593 (838)
Q Consensus 515 ~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~ 593 (838)
...+......|.+.|++++|...|.+.... +.......+..... +.+ ..|. ...|..+..++.+
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~--------~~~~~~~~~~~~~~--~~~-----~~~~~~~~~~nla~~~~~ 75 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTR--------LDTLILREKPGEPE--WVE-----LDRKNIPLYANMSQCYLN 75 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------HHHHHHTSCTTSHH--HHH-----HHHTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------HHHhcccCCCCHHH--HHH-----HHHHHHHHHHHHHHHHHh
Confidence 445667788899999999999998764311 00000000000000 000 1122 2345555555555
Q ss_pred cCCHHHHHHHHHHHHhcCCccC-CCchHHHHHHHHHhcCCHHHHHHHHhhC
Q 046257 594 AGLVDEGQQYFDIMVNEHHIYP-TMEHYSCMVDLYSRAGMLEKAMDIINRM 643 (838)
Q Consensus 594 ~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~G~~~~A~~~~~~m 643 (838)
.|++++|...++..++. .| +...|..+..+|...|++++|.+.+++.
T Consensus 76 ~~~~~~A~~~~~~al~~---~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a 123 (162)
T 3rkv_A 76 IGDLHEAEETSSEVLKR---EETNEKALFRRAKARIAAWKLDEAEEDLKLL 123 (162)
T ss_dssp HTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHhcHHHHHHHHHHH
Confidence 66666666666555522 23 2344555666666666666666666655
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=97.70 E-value=0.0001 Score=64.65 Aligned_cols=108 Identities=10% Similarity=0.108 Sum_probs=84.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC--CCC----hhHHHH
Q 046257 516 CVSSALVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDL--EFD----GITFIG 586 (838)
Q Consensus 516 ~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~--~pd----~~t~~~ 586 (838)
..+..+...|...|++++|...|++.. +.+...|..+...|...|++++|+..|++..+... .++ ..++..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 345667778899999999999998765 45778899999999999999999999999988421 122 567888
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhcCCccCCCchHHHHHHH
Q 046257 587 VITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDL 626 (838)
Q Consensus 587 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~ 626 (838)
+..++...|++++|.+.|+...+. .|+......+..+
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~l~~~ 121 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAE---HRTPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---CCCHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh---CCCHHHHHHHHHH
Confidence 888999999999999999998843 4555555444433
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=97.68 E-value=0.0045 Score=64.12 Aligned_cols=184 Identities=10% Similarity=0.055 Sum_probs=117.9
Q ss_pred HHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhc-C-CHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChH-------
Q 046257 496 VEQGKQFHACSIKAKLNNALCVSSALVTMYSKK-G-NIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTK------- 563 (838)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~-g-~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~------- 563 (838)
++.+..+...+++.. +.+..+|+--...+.+. + ++++++++++++. .+|...|+--.-.+.+.|..+
T Consensus 105 l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~ 183 (349)
T 3q7a_A 105 LEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQW 183 (349)
T ss_dssp HHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHH
T ss_pred HHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhH
Confidence 445555555444433 22334444444444444 5 7788999998887 457788887766666666666
Q ss_pred -HHHHHHHHHHHcCCCC-ChhHHHHHHHHHhccCC-------HHHHHHHHHHHHhcCCccCC-CchHHHHHHHHHhcCCH
Q 046257 564 -KALEVFKEMRRQDLEF-DGITFIGVITACTHAGL-------VDEGQQYFDIMVNEHHIYPT-MEHYSCMVDLYSRAGML 633 (838)
Q Consensus 564 -~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~-------~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~G~~ 633 (838)
++++.++++.+. .| |...|+.......+.+. +++++++++.++.. .|+ ...|.-+-.++.+.|+-
T Consensus 184 ~eELe~~~k~I~~--dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~---~P~n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 184 GSELDWCNEMLRV--DGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHL---IPHNVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhcCCC
Confidence 899999999995 44 45677777777777775 78999999888743 454 34555556666666653
Q ss_pred --------------------HHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHH
Q 046257 634 --------------------EKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRK 693 (838)
Q Consensus 634 --------------------~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~ 693 (838)
.+..++..++.-..+. .+.++.++-+...|+.+|...|+.++|.++++
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~ 326 (349)
T 3q7a_A 259 LVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLP------------EDTPLPVPLALEYLADSFIEQNRVDDAAKVFE 326 (349)
T ss_dssp SGGGHHHHGGGTC--------------CCCCC-CCC------------SSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cccccccccccccccccccchhHHHHHHHHHhcccc------------cccCCCcHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 3334444443211000 12235678888899999999999999999999
Q ss_pred HHhh
Q 046257 694 LMND 697 (838)
Q Consensus 694 ~m~~ 697 (838)
.+.+
T Consensus 327 ~l~~ 330 (349)
T 3q7a_A 327 KLSS 330 (349)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9864
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00015 Score=72.64 Aligned_cols=202 Identities=10% Similarity=0.035 Sum_probs=87.6
Q ss_pred hCCChHHHHHHHccCCC--C-CcchHHHH-------HHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCC
Q 046257 125 RTNNVEDGRRVFDDMNE--S-NVVSWTSL-------LSGYARNKMNDRVLELFHRMQVEGIKPNSFTFSTVLGVLADEGI 194 (838)
Q Consensus 125 ~~g~~~~A~~~f~~m~~--~-~~~~~~~l-------i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 194 (838)
..++.+.|++.|.+..+ | ....|+.+ ...+.+.++..+++..+.+-. ++.|+......-| .|-
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l--~l~p~~l~a~~~~-----~g~ 90 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSV--QISMSTLNARIAI-----GGL 90 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTT--TCCGGGGCCEEEC-----CTT
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHh--cCChhhhhhhhcc-----CCc
Confidence 46888888888887764 3 34567766 345555555555555444433 2333321110000 000
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHhHcCCChhHHHHHHhcCCC--CCcchHHHHHHHHHhCCChHHHHHHHHHhh
Q 046257 195 VATAVQVHTMVIKNGGEVVTSVCNALISMYLKSKMVRDARAVFDGMED--RDSITWNSMVAGYVTNELHMEAFETFNNMG 272 (838)
Q Consensus 195 ~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~~~~~~n~li~~~~~~g~~~~A~~l~~~m~ 272 (838)
+.. +..-+..-..+.-.+..++...|++++|.++|+.+.. |+......+...+.+.+++++|+..|+...
T Consensus 91 y~~--------~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~ 162 (282)
T 4f3v_A 91 YGD--------ITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAG 162 (282)
T ss_dssp TCC--------CEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGG
T ss_pred ccc--------cccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhh
Confidence 000 0000000011222333444445555555555555443 211133333334555555555555554332
Q ss_pred hCCCCCC--hhhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCC--hhHHHHHHHHHHcCCChHHHHHHHHhcc
Q 046257 273 LAGAELT--RSTFVSVIKLCATTKELRLARQLHSQVLKNGIDFD--HNIRTGLMVAYSKCGKMEDASKIFSMMR 342 (838)
Q Consensus 273 ~~g~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~Li~~y~~~g~~~~A~~~f~~~~ 342 (838)
... .|. ...+..+-.++...|++++|...+++.......|. ......+..++.+.|+.++|..+|+++.
T Consensus 163 ~~~-d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~ 235 (282)
T 4f3v_A 163 KWP-DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQ 235 (282)
T ss_dssp GCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred ccC-CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 211 010 11344444455555555555555555543221122 2233444445555555555555555554
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.62 E-value=3.9e-05 Score=66.44 Aligned_cols=84 Identities=14% Similarity=0.220 Sum_probs=42.7
Q ss_pred CCHHHHHHHHHHHHhcCCccC-CCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHH
Q 046257 595 GLVDEGQQYFDIMVNEHHIYP-TMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYV 673 (838)
Q Consensus 595 g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~ 673 (838)
|++++|...|+...+...-.| +...+..+..+|.+.|++++|.+.+++. ++++|+++..+.
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a------------------l~~~p~~~~~~~ 65 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANG------------------VKQFPNHQALRV 65 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH------------------HHHCTTCHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHH------------------HHhCCCchHHHH
Confidence 444555555555442100012 2234455555556666666666666554 455566666666
Q ss_pred HHHHHHHhcCCchHHHHHHHHHh
Q 046257 674 LLSNMYAATGHWQERARVRKLMN 696 (838)
Q Consensus 674 ~l~~~y~~~g~~~~a~~~~~~m~ 696 (838)
.++.+|...|++++|...+++..
T Consensus 66 ~l~~~~~~~g~~~~A~~~~~~al 88 (117)
T 3k9i_A 66 FYAMVLYNLGRYEQGVELLLKII 88 (117)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Confidence 66666666666666666555554
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00013 Score=65.95 Aligned_cols=94 Identities=12% Similarity=0.073 Sum_probs=81.0
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCC-------------chHHHHHHHHHhcCCHHHHHHHHhhCCCCCCH
Q 046257 583 TFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTM-------------EHYSCMVDLYSRAGMLEKAMDIINRMPFAASA 649 (838)
Q Consensus 583 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-------------~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~ 649 (838)
.+......+...|++++|...|+..++ +.|+. ..|..+..++.+.|++++|+..+++.
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~---l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kA------ 83 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAME---ISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKA------ 83 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH---HHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHh---hCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHH------
Confidence 455667778899999999999999883 34551 17888899999999999999999986
Q ss_pred HHHHHHHHHHHHhcc-------CCCCchhH----HHHHHHHHhcCCchHHHHHHHHHhh
Q 046257 650 TVWRTVLAACRLISL-------QPHDSAIY----VLLSNMYAATGHWQERARVRKLMND 697 (838)
Q Consensus 650 ~~w~~ll~~c~~~~l-------~P~~~~~y----~~l~~~y~~~g~~~~a~~~~~~m~~ 697 (838)
+++ +|+++..| ..++.+|...|++++|...+++..+
T Consensus 84 ------------L~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 84 ------------LHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp ------------HHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ------------HHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 555 99999999 9999999999999999999998864
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00019 Score=65.47 Aligned_cols=128 Identities=13% Similarity=0.062 Sum_probs=96.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-CC----h
Q 046257 516 CVSSALVTMYSKKGNIESASEVFKRQRK-----RD----LVSWNSMICGYAQHGHTKKALEVFKEMRRQDLE-FD----G 581 (838)
Q Consensus 516 ~~~~~li~~y~k~g~~~~A~~~f~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-pd----~ 581 (838)
.++..+...|...|++++|.+.|++... .+ ..++..+...|...|++++|++.|++..+..-. ++ .
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 3556677788899999999999987651 22 147888999999999999999999998763111 12 3
Q ss_pred hHHHHHHHHHhccCCHHHHHHHHHHHHhcC---CccC-CCchHHHHHHHHHhcCCHHHHHHHHhhC
Q 046257 582 ITFIGVITACTHAGLVDEGQQYFDIMVNEH---HIYP-TMEHYSCMVDLYSRAGMLEKAMDIINRM 643 (838)
Q Consensus 582 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~p-~~~~y~~lv~~l~r~G~~~~A~~~~~~m 643 (838)
.++..+...+...|++++|.++++...+.. +..+ ....+..+...+...|++++|.+.+++.
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 155 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 155 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 457777888899999999999998876331 1111 1345777889999999999999999865
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00041 Score=75.72 Aligned_cols=192 Identities=9% Similarity=-0.038 Sum_probs=119.3
Q ss_pred HHHHHHcCCHHHHHHHHHhcCCC-----Cc---------------chHHHHHHHHHhcCCchHHHHHHHHhhcCC-CCCC
Q 046257 420 LNAYVKKGILDEAAKVFELIDEK-----DI---------------VAWSAMLAGYAQIGDTEGAVKIYRQLTSEG-VKPN 478 (838)
Q Consensus 420 i~~y~~~g~~~~A~~~f~~~~~~-----~~---------------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~ 478 (838)
...+.+.|++++|.+.|..+.+. +. .++..+...|...|++++|.+.+.++...- ..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 34567899999999999877531 11 136788999999999999999998876421 1111
Q ss_pred HhhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC--------CC-CHHHH
Q 046257 479 EFTFSSVINACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQR--------KR-DLVSW 549 (838)
Q Consensus 479 ~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~--------~~-~~~~~ 549 (838)
..+... +.+.+-..+...|+.+.|.++++... .+ -..++
T Consensus 91 ~~~~~~--------------------------------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 138 (434)
T 4b4t_Q 91 SKTVKV--------------------------------LKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLS 138 (434)
T ss_dssp HHHHHH--------------------------------HHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHH
T ss_pred hHHHHH--------------------------------HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHH
Confidence 111100 11112222334455566555554332 11 13466
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCC----CC-hhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCC-----ch
Q 046257 550 NSMICGYAQHGHTKKALEVFKEMRRQDLE----FD-GITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTM-----EH 619 (838)
Q Consensus 550 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~----pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-----~~ 619 (838)
..+...|...|++++|+.++++....-.. |. ..++..+...|...|++++|..+++.......-.+++ ..
T Consensus 139 ~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 218 (434)
T 4b4t_Q 139 IKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAEL 218 (434)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHH
Confidence 77788888888888888888877653111 22 2357777778888888888888887765322111221 34
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhC
Q 046257 620 YSCMVDLYSRAGMLEKAMDIINRM 643 (838)
Q Consensus 620 y~~lv~~l~r~G~~~~A~~~~~~m 643 (838)
+.++...+...|++++|...+.+.
T Consensus 219 ~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 219 DLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp HHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHH
Confidence 566677777888888887776544
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.55 E-value=5.4e-05 Score=65.53 Aligned_cols=82 Identities=12% Similarity=0.221 Sum_probs=45.6
Q ss_pred cCChHHHHHHHHHHHHcCC-CCC-hhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccC-CCchHHHHHHHHHhcCCHHH
Q 046257 559 HGHTKKALEVFKEMRRQDL-EFD-GITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYP-TMEHYSCMVDLYSRAGMLEK 635 (838)
Q Consensus 559 ~g~~~~A~~l~~~m~~~g~-~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~G~~~~ 635 (838)
.|++++|+..|++.++.+. .|+ ...+..+..++...|++++|..+|+...+. .| +...+..+..+|.+.|++++
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~ 79 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ---FPNHQALRVFYAMVLYNLGRYEQ 79 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCchHHHHHHHHHHHHcCCHHH
Confidence 4566666666666666321 133 244555666666666666666666666533 23 23455556666666677777
Q ss_pred HHHHHhhC
Q 046257 636 AMDIINRM 643 (838)
Q Consensus 636 A~~~~~~m 643 (838)
|.+.+++.
T Consensus 80 A~~~~~~a 87 (117)
T 3k9i_A 80 GVELLLKI 87 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666654
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=97.53 E-value=0.011 Score=60.84 Aligned_cols=216 Identities=12% Similarity=0.110 Sum_probs=131.1
Q ss_pred hcCCch-HHHHHHHHhhcCCCCCCHhhH-H---HHHHHhcCC------hhhHHHHHHHHHHHHHhcCCCchhHHHHHHHH
Q 046257 456 QIGDTE-GAVKIYRQLTSEGVKPNEFTF-S---SVINACTAP------SAAVEQGKQFHACSIKAKLNNALCVSSALVTM 524 (838)
Q Consensus 456 ~~g~~~-~A~~l~~~m~~~g~~p~~~t~-~---~ll~a~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 524 (838)
+.|.+. +|++++..+.. +.|+..|. + .+|...... ...++....+...++... +-+..+|+--.-.
T Consensus 41 ~~~e~s~eaL~~t~~~L~--~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wl 117 (331)
T 3dss_A 41 QAGELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWL 117 (331)
T ss_dssp HTTCCSHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 444443 67777777775 45655443 1 112111100 011455556666666544 3355666665556
Q ss_pred HHhcC--CHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhcc---
Q 046257 525 YSKKG--NIESASEVFKRQR---KRDLVSWNSMICGYAQHGH-TKKALEVFKEMRRQDLEFD-GITFIGVITACTHA--- 594 (838)
Q Consensus 525 y~k~g--~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~--- 594 (838)
+.+.| .++++..+++++. ++|...|+--.-.+...|. .+++++.+.++.+. .|+ ...|+.......+.
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~--~p~N~SAW~~R~~ll~~l~~~ 195 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--NFSNYSSWHYRSCLLPQLHPQ 195 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHHSCC
T ss_pred HhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhhhc
Confidence 66667 4888888888776 6678888888888888887 58899999999884 454 45565554444433
Q ss_pred -----------CCHHHHHHHHHHHHhcCCccCCC-chHHHHHHHHHhc-----------CCHHHHHHHHhhCCCCCCHHH
Q 046257 595 -----------GLVDEGQQYFDIMVNEHHIYPTM-EHYSCMVDLYSRA-----------GMLEKAMDIINRMPFAASATV 651 (838)
Q Consensus 595 -----------g~~~~a~~~~~~m~~~~~~~p~~-~~y~~lv~~l~r~-----------G~~~~A~~~~~~m~~~~~~~~ 651 (838)
+.++++++++...+.. .|+- ..|+-+-.++.+. +.++++++.++++
T Consensus 196 ~~~~~~~~~~~~~~~eEle~~~~ai~~---~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~el-------- 264 (331)
T 3dss_A 196 PDSGPQGRLPENVLLKELELVQNAFFT---DPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKEL-------- 264 (331)
T ss_dssp C------CCCHHHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHH--------
T ss_pred cccccccccchHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHH--------
Confidence 4578888888887743 4543 3444344445444 3456666666665
Q ss_pred HHHHHHHHHHhccCCCCchhHHHHHHHH---HhcCCchHHHHHHHHHhh
Q 046257 652 WRTVLAACRLISLQPHDSAIYVLLSNMY---AATGHWQERARVRKLMND 697 (838)
Q Consensus 652 w~~ll~~c~~~~l~P~~~~~y~~l~~~y---~~~g~~~~a~~~~~~m~~ 697 (838)
++++|++.-.+..++-+. ...|..+++...+.++.+
T Consensus 265 ----------le~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 265 ----------QELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp ----------HHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred ----------HhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 778887754443333222 235677778878877765
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.44 E-value=0.0018 Score=72.95 Aligned_cols=134 Identities=8% Similarity=0.100 Sum_probs=106.1
Q ss_pred HHHHHHHHHhcC---CCCHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHhccC-CHHHHHHH
Q 046257 531 IESASEVFKRQR---KRDLVSWNSMICGYAQHG--HTKKALEVFKEMRRQDLEF-DGITFIGVITACTHAG-LVDEGQQY 603 (838)
Q Consensus 531 ~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g--~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g-~~~~a~~~ 603 (838)
++++.+.++.+. +++..+|+.-...+.+.| +++++++.++++.+. .| |...|+.-..+..+.| .++++.++
T Consensus 89 ~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~ 166 (567)
T 1dce_A 89 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAF 166 (567)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHH
Confidence 778888888775 668889999888888999 669999999999994 45 4567777777778888 89999999
Q ss_pred HHHHHhcCCccC-CCchHHHHHHHHHhc--------------CCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCC
Q 046257 604 FDIMVNEHHIYP-TMEHYSCMVDLYSRA--------------GMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHD 668 (838)
Q Consensus 604 ~~~m~~~~~~~p-~~~~y~~lv~~l~r~--------------G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~ 668 (838)
++.+++. .| +...|.-...++.+. +.+++|.++++++ ++++|+|
T Consensus 167 ~~~~I~~---~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~a------------------i~~~P~~ 225 (567)
T 1dce_A 167 TDSLITR---NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNA------------------FFTDPND 225 (567)
T ss_dssp HHTTTTT---TCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHH------------------HHHCSSC
T ss_pred HHHHHHH---CCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHH------------------HhhCCCC
Confidence 9988733 34 344555555555542 5578888888876 8899999
Q ss_pred chhHHHHHHHHHhcCCchH
Q 046257 669 SAIYVLLSNMYAATGHWQE 687 (838)
Q Consensus 669 ~~~y~~l~~~y~~~g~~~~ 687 (838)
..+|.-+..++...|+.++
T Consensus 226 ~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 226 QSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SHHHHHHHHHHSCCCCCSC
T ss_pred ccHHHHHHHHHhcCCCccc
Confidence 9999999999999998665
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.43 E-value=0.0011 Score=72.99 Aligned_cols=122 Identities=14% Similarity=0.099 Sum_probs=100.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcC---CCC---------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC
Q 046257 517 VSSALVTMYSKKGNIESASEVFKRQR---KRD---------------LVSWNSMICGYAQHGHTKKALEVFKEMRRQDLE 578 (838)
Q Consensus 517 ~~~~li~~y~k~g~~~~A~~~f~~~~---~~~---------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 578 (838)
.+..+...|.+.|++++|...|++.. +.+ ...|+.+..+|.+.|++++|+..|++.++ +.
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~--~~ 347 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG--LD 347 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh--cC
Confidence 44556677889999999999998765 233 58899999999999999999999999999 55
Q ss_pred CC-hhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccC-CCchHHHHHHHHHhcCCHHHHHH-HHhhC
Q 046257 579 FD-GITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYP-TMEHYSCMVDLYSRAGMLEKAMD-IINRM 643 (838)
Q Consensus 579 pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~G~~~~A~~-~~~~m 643 (838)
|+ ...+..+..++...|++++|...|+...+ +.| +...+..+..++.+.|+.++|.+ ++.+|
T Consensus 348 p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~---l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 348 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLE---VNPQNKAARLQISMCQKKAKEHNERDRRIYANM 412 (457)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---TC----CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CccHHHHHHHHHHHHHccCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65 56788899999999999999999999873 455 45788889999999999998874 45666
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00019 Score=78.90 Aligned_cols=134 Identities=10% Similarity=0.043 Sum_probs=86.8
Q ss_pred HHHcCChHHHHHHHHHHHHc---CCCCCh----hHHHHHHHHHhccCCHHHHHHHHHHHHhc----CCc-cCC-CchHHH
Q 046257 556 YAQHGHTKKALEVFKEMRRQ---DLEFDG----ITFIGVITACTHAGLVDEGQQYFDIMVNE----HHI-YPT-MEHYSC 622 (838)
Q Consensus 556 ~~~~g~~~~A~~l~~~m~~~---g~~pd~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~----~~~-~p~-~~~y~~ 622 (838)
+...|++++|+.++++.++. -+-|++ .+++.|..+|...|++++|..++++...- +|- -|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 44556667776666665542 122332 35667777777777777777777665422 221 122 235788
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCc---hhHHHHHHHHHhcCCchHHHHHHHHHhhCC
Q 046257 623 MVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDS---AIYVLLSNMYAATGHWQERARVRKLMNDRK 699 (838)
Q Consensus 623 lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~---~~y~~l~~~y~~~g~~~~a~~~~~~m~~~g 699 (838)
|..+|...|++++|+.++++.- .++. ..+.|++| ..+..|...+...|++++|..++..++++-
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al-----~i~~--------~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAY-----AILL--------VTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH-----HHHH--------HHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHH-----HHHH--------HHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999988761 0111 12344443 445678888999999999999999998765
Q ss_pred Ccc
Q 046257 700 VKK 702 (838)
Q Consensus 700 ~~~ 702 (838)
.+.
T Consensus 466 ~~~ 468 (490)
T 3n71_A 466 LNN 468 (490)
T ss_dssp HTC
T ss_pred hcC
Confidence 443
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00077 Score=71.69 Aligned_cols=97 Identities=5% Similarity=0.034 Sum_probs=82.7
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhcC-------------CccC-CCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCC
Q 046257 583 TFIGVITACTHAGLVDEGQQYFDIMVNEH-------------HIYP-TMEHYSCMVDLYSRAGMLEKAMDIINRMPFAAS 648 (838)
Q Consensus 583 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-------------~~~p-~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~ 648 (838)
.+..+...+...|++++|.+.|+...+.. ...| +...|..+..+|.+.|++++|++.+++.
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a----- 299 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEA----- 299 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH-----
Confidence 35667778889999999999999887410 0223 3467888999999999999999999987
Q ss_pred HHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhh
Q 046257 649 ATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMND 697 (838)
Q Consensus 649 ~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~ 697 (838)
++++|+++.+|..++.+|...|++++|.+.+++..+
T Consensus 300 -------------l~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~ 335 (370)
T 1ihg_A 300 -------------LEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE 335 (370)
T ss_dssp -------------HTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -------------HHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 889999999999999999999999999999998875
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00034 Score=73.51 Aligned_cols=120 Identities=11% Similarity=0.029 Sum_probs=71.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcC--CCCH------------------HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC
Q 046257 519 SALVTMYSKKGNIESASEVFKRQR--KRDL------------------VSWNSMICGYAQHGHTKKALEVFKEMRRQDLE 578 (838)
Q Consensus 519 ~~li~~y~k~g~~~~A~~~f~~~~--~~~~------------------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 578 (838)
..+...|.+.|++++|...|++.. .|+. ..|+.+..+|.+.|++++|+..|++.++ +.
T Consensus 183 ~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~--~~ 260 (338)
T 2if4_A 183 KMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLT--EE 260 (338)
T ss_dssp HHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHH--HC
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hC
Confidence 344556667777888877777654 3322 2788999999999999999999999998 56
Q ss_pred CC-hhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCC-CchHHHHHHHH-HhcCCHHHHHHHHhhC
Q 046257 579 FD-GITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPT-MEHYSCMVDLY-SRAGMLEKAMDIINRM 643 (838)
Q Consensus 579 pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l-~r~G~~~~A~~~~~~m 643 (838)
|+ ...+..+..++...|++++|...|+... .+.|+ ...+..+..+. ...+..+++.+.+.+|
T Consensus 261 p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al---~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~ 325 (338)
T 2if4_A 261 EKNPKALFRRGKAKAELGQMDSARDDFRKAQ---KYAPDDKAIRRELRALAEQEKALYQKQKEMYKGI 325 (338)
T ss_dssp TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTT---C---------------------------------
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 65 5678889999999999999999999886 34554 44555555553 3456778888888887
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00045 Score=58.52 Aligned_cols=87 Identities=16% Similarity=0.130 Sum_probs=50.1
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhcCCccC-CCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHH
Q 046257 583 TFIGVITACTHAGLVDEGQQYFDIMVNEHHIYP-TMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRL 661 (838)
Q Consensus 583 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~ 661 (838)
.+..+...+...|++++|.+.|+...+. .| +...+..+..+|.+.|++++|.+.+++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a------------------ 64 (111)
T 2l6j_A 6 KQKEQGNSLFKQGLYREAVHCYDQLITA---QPQNPVGYSNKAMALIKLGEYTQAIQMCQQG------------------ 64 (111)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHH------------------
Confidence 3444445555555555555555555422 22 2344555666666667777776666665
Q ss_pred hccCCCC------chhHHHHHHHHHhcCCchHHHH
Q 046257 662 ISLQPHD------SAIYVLLSNMYAATGHWQERAR 690 (838)
Q Consensus 662 ~~l~P~~------~~~y~~l~~~y~~~g~~~~a~~ 690 (838)
++++|++ ...+..++.++...|++++|..
T Consensus 65 l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 99 (111)
T 2l6j_A 65 LRYTSTAEHVAIRSKLQYRLELAQGAVGSVQIPVV 99 (111)
T ss_dssp HTSCSSTTSHHHHHHHHHHHHHHHHHHHCCCCCSS
T ss_pred HHhCCCccHHHHHHHHHHHHHHHHHHHHhHhhhHh
Confidence 5566665 5566666666666666665544
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.0024 Score=69.54 Aligned_cols=210 Identities=8% Similarity=-0.010 Sum_probs=138.4
Q ss_pred HHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCH
Q 046257 452 AGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNI 531 (838)
Q Consensus 452 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~ 531 (838)
..+.+.|++++|++.|.++.+.......... .. +......... ......|...|.+.|++
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~--------~~-~~~~~~~~~~-----------~~al~~l~~~y~~~~~~ 71 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAA--------GA-SVDDKRRNEQ-----------ETSILELGQLYVTMGAK 71 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSS--------SS-SBCSHHHHHH-----------HHHHHHHHHHHHHHTCH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHH--------HH-HHHHHHhhhH-----------HHHHHHHHHHHHHCCCH
Confidence 4567889999999999998874322211100 00 0000000000 01235578889999999
Q ss_pred HHHHHHHHhcCC-----CCH----HHHHHHHHHHHHcCChHHHHHHHHHHHH----cCCCCC-hhHHHHHHHHHhccCCH
Q 046257 532 ESASEVFKRQRK-----RDL----VSWNSMICGYAQHGHTKKALEVFKEMRR----QDLEFD-GITFIGVITACTHAGLV 597 (838)
Q Consensus 532 ~~A~~~f~~~~~-----~~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~pd-~~t~~~ll~a~~~~g~~ 597 (838)
++|.+.+....+ ++. ...+.+...+...|+.++|++++++... .+..+. ..++..+...+...|++
T Consensus 72 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 151 (434)
T 4b4t_Q 72 DKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQY 151 (434)
T ss_dssp HHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccCh
Confidence 999999987651 111 2344444555667899999999998765 233333 34677888899999999
Q ss_pred HHHHHHHHHHHhcCCccCC----CchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCC----c
Q 046257 598 DEGQQYFDIMVNEHHIYPT----MEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHD----S 669 (838)
Q Consensus 598 ~~a~~~~~~m~~~~~~~p~----~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~----~ 669 (838)
++|..+++.......-..+ .+.|..++.+|...|++++|..++++.- .+ ..-.|.. .
T Consensus 152 ~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al-----~~----------~~~~~~~~~~~~ 216 (434)
T 4b4t_Q 152 KDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAAR-----TA----------ANSIYCPTQTVA 216 (434)
T ss_dssp HHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-----HH----------HHHSCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHH-----HH----------hhcCCCchHHHH
Confidence 9999999887644222122 3468888999999999999999998751 00 0001111 3
Q ss_pred hhHHHHHHHHHhcCCchHHHHHHHHHh
Q 046257 670 AIYVLLSNMYAATGHWQERARVRKLMN 696 (838)
Q Consensus 670 ~~y~~l~~~y~~~g~~~~a~~~~~~m~ 696 (838)
..+..++.+|...|+|++|.+.+...-
T Consensus 217 ~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 217 ELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 456778889999999999988776664
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00023 Score=60.41 Aligned_cols=95 Identities=8% Similarity=0.067 Sum_probs=69.0
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCC------
Q 046257 545 DLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTM------ 617 (838)
Q Consensus 545 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~------ 617 (838)
+...|..+...+...|++++|++.|++..+ ..|+ ...+..+..++...|++++|.+.++...+ +.|+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~ 77 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLIT--AQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR---YTSTAEHVAIR 77 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---SCSSTTSHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---hCCCccHHHHH
Confidence 345677788888888889999999888888 4554 56677788888888999999998888873 34553
Q ss_pred -chHHHHHHHHHhcCCHHHHHHHHhhCC
Q 046257 618 -EHYSCMVDLYSRAGMLEKAMDIINRMP 644 (838)
Q Consensus 618 -~~y~~lv~~l~r~G~~~~A~~~~~~m~ 644 (838)
..+..+..++...|+.++|.+.++++|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 105 (111)
T 2l6j_A 78 SKLQYRLELAQGAVGSVQIPVVEVDELP 105 (111)
T ss_dssp HHHHHHHHHHHHHHHCCCCCSSSSSSCS
T ss_pred HHHHHHHHHHHHHHHhHhhhHhHHHHhH
Confidence 344555666666777777766666653
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0012 Score=53.39 Aligned_cols=80 Identities=19% Similarity=0.336 Sum_probs=51.0
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhcCCccC-CCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHH
Q 046257 583 TFIGVITACTHAGLVDEGQQYFDIMVNEHHIYP-TMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRL 661 (838)
Q Consensus 583 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~ 661 (838)
.+..+...+...|++++|..+|+...+. .| +...+..+..+|.+.|++++|.+.+++.
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a------------------ 69 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALEL---DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKA------------------ 69 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH------------------
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH------------------
Confidence 4445555555666666666666655532 22 3345566677777777777777777765
Q ss_pred hccCCCCchhHHHHHHHHHhcC
Q 046257 662 ISLQPHDSAIYVLLSNMYAATG 683 (838)
Q Consensus 662 ~~l~P~~~~~y~~l~~~y~~~g 683 (838)
++++|+++..+..++.+|...|
T Consensus 70 ~~~~p~~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 70 LELDPNNAEAKQNLGNAKQKQG 91 (91)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHC
T ss_pred HhcCCCCHHHHHHHHHHHHhcC
Confidence 5667777777777777776544
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00079 Score=56.13 Aligned_cols=64 Identities=8% Similarity=0.099 Sum_probs=58.4
Q ss_pred CCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHH
Q 046257 616 TMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLM 695 (838)
Q Consensus 616 ~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m 695 (838)
+...+..+...|.+.|++++|++.+++. ++++|+++.+|..++.+|...|++++|.+.+++.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~a------------------l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 67 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEEL------------------VETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQG 67 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHH------------------HHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHH------------------HHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3456788899999999999999999987 7899999999999999999999999999999987
Q ss_pred hh
Q 046257 696 ND 697 (838)
Q Consensus 696 ~~ 697 (838)
.+
T Consensus 68 l~ 69 (100)
T 3ma5_A 68 IE 69 (100)
T ss_dssp HH
T ss_pred Hh
Confidence 64
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0002 Score=75.03 Aligned_cols=433 Identities=10% Similarity=0.088 Sum_probs=245.5
Q ss_pred ChhHHHHHHHHHHhCCChHHHHHHHccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHHhc
Q 046257 112 DVNVSTSLVDLYMRTNNVEDGRRVFDDMNESNVVSWTSLLSGYARNKMNDRVLELFHRMQVEGIKPNSFTFSTVLGVLAD 191 (838)
Q Consensus 112 ~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~ 191 (838)
.+.+|..|..++.+.+.+.+|++.|-+. .|+..|..+|....+.|.+++-+..+...++..-.| ..=+.|+-+|++
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA--~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~--~IDteLi~ayAk 128 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES--YVETELIFALAK 128 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCC--SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCST--TTTHHHHHHHHT
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhC--CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccc--ccHHHHHHHHHh
Confidence 4456677777777777776666655333 455556677777777777777776665554442222 333456667777
Q ss_pred CCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHcCCChhHHHHHHhcCCC------------------------CCcch
Q 046257 192 EGIVATAVQVHTMVIKNGGEVVTSVCNALISMYLKSKMVRDARAVFDGMED------------------------RDSIT 247 (838)
Q Consensus 192 ~g~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~------------------------~~~~~ 247 (838)
.+++.+.+++.. .|+..-...+.+-+...|.++.|.-+|..+.. .++.+
T Consensus 129 ~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~kt 201 (624)
T 3lvg_A 129 TNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRT 201 (624)
T ss_dssp SCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCS
T ss_pred hCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhH
Confidence 666554443332 34444445555556666666666666665542 36788
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHhCC-CCChhHHHHHHHHHH
Q 046257 248 WNSMVAGYVTNELHMEAFETFNNMGLAGAELTRSTFVSVIKLCATTKELRLARQLHSQVLKNGI-DFDHNIRTGLMVAYS 326 (838)
Q Consensus 248 ~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~Li~~y~ 326 (838)
|-.+-.+|+..+.+.-|.-.--.+.- .| ..+..++..|-..|-+++-..+++.-+ |. .....+++-|.-.|+
T Consensus 202 WKeV~~ACvd~~EfrLAqicGLniIv---ha--deL~elv~~YE~~G~f~ELIsLlEagl--glErAHmGmFTELaILYs 274 (624)
T 3lvg_A 202 WKEVCFACVDGKEFRLAQMCGLHIVV---HA--DELEELINYYQDRGYFEELITMLEAAL--GLERAHMGMFTELAILYS 274 (624)
T ss_dssp HHHHTHHHHHSCTTTTTTHHHHHHHC---CS--SCCSGGGSSSSTTCCCTTSTTTHHHHT--TSTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCchHHHHHHHhcchhcc---cH--HHHHHHHHHHHhCCCHHHHHHHHHHHh--CCCchhHHHHHHHHHHHH
Confidence 99999999999988766544333331 11 223345566777888887777777655 32 346778899998998
Q ss_pred cCCChHHHHHHHHhccc---CC-------CeeehHHHHHHHHHcCChHHHHHHHHHhhhcCCCCCcccHHHHHhhCCCCC
Q 046257 327 KCGKMEDASKIFSMMRE---MK-------DVVSWTAMISGHLQNGAIDLAVNFFCQMTREGVRPNGFTYSIILTAQPAVS 396 (838)
Q Consensus 327 ~~g~~~~A~~~f~~~~~---~~-------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~ 396 (838)
|-. .++-.+-++..-. .| ....|.-++-.|.+..+++.|... |.+. .|+...-..+.....+..
T Consensus 275 KY~-PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~lt---Mi~h--~~~Aw~h~~Fkdii~KVa 348 (624)
T 3lvg_A 275 KFK-PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT---MMNH--PTDAWKEGQFKDIITKVA 348 (624)
T ss_dssp SSC-TTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHT---TTSC--HHHHCCGGGGTTTGGGCS
T ss_pred hcC-HHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHH---HHhC--ChhhccHHHHHHHHHHcc
Confidence 874 3333333322221 22 344588888888888888876543 2221 112222222233334444
Q ss_pred hhHHHHHHHHhhccCCcchhhHHHHHHHHcCCHHHHHHHHH-------------hcCCCCcchH-HHHHHHHHhcCCchH
Q 046257 397 PFQVHAHIIKTNYEKSFSVGTALLNAYVKKGILDEAAKVFE-------------LIDEKDIVAW-SAMLAGYAQIGDTEG 462 (838)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~-------------~~~~~~~~~~-~~li~~~~~~g~~~~ 462 (838)
+.++.-..+..-++-.+...+-|+..+...=+...+.++|. .+...|...- .++-..|....+++.
T Consensus 349 N~EiyYKAi~FYL~e~P~lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEEEDy~~ 428 (624)
T 3lvg_A 349 NVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQA 428 (624)
T ss_dssp CSHHHHHHHHHHTTSCCTTSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHTTCCHH
T ss_pred hHHHHHHHHHHHHHhChHHHHHHHHhccccCChHHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHH
Confidence 44555555555555555555555555444444444444444 3334444333 344555666666543
Q ss_pred HHHHHHHhhcCCCCCCHhhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 046257 463 AVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQR 542 (838)
Q Consensus 463 A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~ 542 (838)
-.. -.+.--.-|......-|.- ..+-.-++ .-...|.|.++++++..+.++=.
T Consensus 429 LR~----SId~ydNFD~i~LA~rLEk-----HeL~eFRr------------------IAA~LYkkn~rw~qsi~l~KkDk 481 (624)
T 3lvg_A 429 LRT----SIDAYDNFDNISLAQRLEK-----HELIEFRR------------------IAAYLFKGNNRWKQSVELCKKDS 481 (624)
T ss_dssp HHH----TTSSCCCSCTTHHHHHHHT-----CSSHHHHH------------------HHHHHHHTTCHHHHHSSCSSTTC
T ss_pred HHH----HHHHhccccHHHHHHHHhh-----CchHHHHH------------------HHHHHHHhcccHHHHHHHHHhcc
Confidence 221 1221112232222222211 11111111 12335788899988887654322
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHH
Q 046257 543 KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGITFIGVITACTHAGLVDEGQQY 603 (838)
Q Consensus 543 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~ 603 (838)
.|---|..-+..|+.+-|.++++-..+.| +...|.+.|..|-..=+.|-++++
T Consensus 482 -----lykDAietAa~S~~~elaeeLL~yFv~~g---~~EcF~a~LytCYdLlrpDvVlEl 534 (624)
T 3lvg_A 482 -----LYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLET 534 (624)
T ss_dssp -----CTTGGGTTTTTCCCTTHHHHHHHHHHHHC---STHHHHHHHHHTSSSSSCHHHHHH
T ss_pred -----cHHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHhhccChHHHHHH
Confidence 12223455567889999999999998876 567899999999888777777665
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=97.04 E-value=0.018 Score=59.20 Aligned_cols=144 Identities=10% Similarity=0.121 Sum_probs=108.5
Q ss_pred HHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHhccCC-HHHHHHH
Q 046257 531 IESASEVFKRQR---KRDLVSWNSMICGYAQHGH--TKKALEVFKEMRRQDLEF-DGITFIGVITACTHAGL-VDEGQQY 603 (838)
Q Consensus 531 ~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~-~~~a~~~ 603 (838)
++++...++.+. +++..+|+.-...+...|+ +++++++++++.+. .| |...|+.-.....+.|. +++++++
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~--dprNy~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 677888887765 6688999998888888884 89999999999994 45 45667766667777787 6999999
Q ss_pred HHHHHhcCCccC-CCchHHHHHHHHHhc--------------CCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCC
Q 046257 604 FDIMVNEHHIYP-TMEHYSCMVDLYSRA--------------GMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHD 668 (838)
Q Consensus 604 ~~~m~~~~~~~p-~~~~y~~lv~~l~r~--------------G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~ 668 (838)
++.+++.. | |...|+-...++.+. +.++++++++++. +.++|+|
T Consensus 168 ~~~~I~~~---p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~a------------------i~~~P~d 226 (331)
T 3dss_A 168 TDSLITRN---FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNA------------------FFTDPND 226 (331)
T ss_dssp HHHHHHHC---SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHH------------------HHHSTTC
T ss_pred HHHHHHHC---CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHH------------------HHhCCCC
Confidence 99998543 4 334455555555544 4577888888776 7889999
Q ss_pred chhHHHHHHHHHhc-----------CCchHHHHHHHHHhh
Q 046257 669 SAIYVLLSNMYAAT-----------GHWQERARVRKLMND 697 (838)
Q Consensus 669 ~~~y~~l~~~y~~~-----------g~~~~a~~~~~~m~~ 697 (838)
..++.-+-.++... +..+++.+.++++.+
T Consensus 227 ~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle 266 (331)
T 3dss_A 227 QSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQE 266 (331)
T ss_dssp HHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHh
Confidence 99988776676666 457788888888865
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.03 E-value=0.0014 Score=56.17 Aligned_cols=78 Identities=10% Similarity=0.098 Sum_probs=60.1
Q ss_pred HHHHHHHHHHhcCCccC-CCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHH
Q 046257 599 EGQQYFDIMVNEHHIYP-TMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSN 677 (838)
Q Consensus 599 ~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~ 677 (838)
++...|+...+ ..| +...+..+...|.+.|++++|.+.+++. ++++|+++..|..++.
T Consensus 3 ~a~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a------------------l~~~p~~~~~~~~la~ 61 (115)
T 2kat_A 3 AITERLEAMLA---QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAA------------------LDFDPTYSVAWKWLGK 61 (115)
T ss_dssp CHHHHHHHHHT---TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH------------------HHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHH---hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHH------------------HHHCCCcHHHHHHHHH
Confidence 45566666652 234 3456777888888888888888888876 6778888888888999
Q ss_pred HHHhcCCchHHHHHHHHHhh
Q 046257 678 MYAATGHWQERARVRKLMND 697 (838)
Q Consensus 678 ~y~~~g~~~~a~~~~~~m~~ 697 (838)
+|...|++++|...+++..+
T Consensus 62 ~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 62 TLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 99999999999888887754
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0014 Score=53.68 Aligned_cols=68 Identities=15% Similarity=0.127 Sum_probs=59.6
Q ss_pred CCCchHHHHHHHHHhcCC---HHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHH
Q 046257 615 PTMEHYSCMVDLYSRAGM---LEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARV 691 (838)
Q Consensus 615 p~~~~y~~lv~~l~r~G~---~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~ 691 (838)
++++.+..+..++...++ .++|..++++. ++++|+++.+...+++.+...|++++|...
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~A------------------L~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~ 65 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQA------------------LQLEPYNEAALSLIANDHFISFRFQEAIDT 65 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHH------------------HHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH------------------HHHCcCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 466778888888865555 79999999987 899999999999999999999999999999
Q ss_pred HHHHhhCCC
Q 046257 692 RKLMNDRKV 700 (838)
Q Consensus 692 ~~~m~~~g~ 700 (838)
|+++.+...
T Consensus 66 w~~~l~~~p 74 (93)
T 3bee_A 66 WVLLLDSND 74 (93)
T ss_dssp HHHHHTCCC
T ss_pred HHHHHhhCC
Confidence 999987543
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0029 Score=56.39 Aligned_cols=113 Identities=13% Similarity=0.062 Sum_probs=91.0
Q ss_pred cCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHh----cCCHH
Q 046257 559 HGHTKKALEVFKEMRRQDLEFDGITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSR----AGMLE 634 (838)
Q Consensus 559 ~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r----~G~~~ 634 (838)
.++.++|++.|++..+.| .|+.. +...+...+.+++|.++|+...+. -+...+..|..+|.. .++++
T Consensus 8 ~~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~ 78 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLR 78 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHH
T ss_pred ccCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHH
Confidence 456889999999999987 44433 666777778899999999988743 355667778888888 88999
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHh----cCCchHHHHHHHHHhhCCC
Q 046257 635 KAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAA----TGHWQERARVRKLMNDRKV 700 (838)
Q Consensus 635 ~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~----~g~~~~a~~~~~~m~~~g~ 700 (838)
+|.+++++.- + -.++.++..|+.+|.. .++.++|.+++++..+.|.
T Consensus 79 ~A~~~~~~Aa------------------~--~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 79 KAAQYYSKAC------------------G--LNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHH------------------H--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHH------------------c--CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 9999999761 2 2478889999999999 8999999999999887764
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0025 Score=69.99 Aligned_cols=127 Identities=13% Similarity=0.045 Sum_probs=88.7
Q ss_pred HHhccCCHHHHHHHHHHHHhcCC--ccCC----CchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhc
Q 046257 590 ACTHAGLVDEGQQYFDIMVNEHH--IYPT----MEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLIS 663 (838)
Q Consensus 590 a~~~~g~~~~a~~~~~~m~~~~~--~~p~----~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~ 663 (838)
.+...|++++|..++++...... +-|+ ..+++.|..+|...|++++|+.++++.- .++...+ -.
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL-----~i~~~~l-----G~ 387 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMV-----DGYMKLY-----HH 387 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-----HHHHHHS-----CT
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH-----HHHHHHc-----CC
Confidence 34578999999999887664322 2222 2458889999999999999999998761 1111111 11
Q ss_pred cCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhhCCCccCCceeEEEECCEEEEEeeCCCCCCChHHHHHHHHHHHHHHH
Q 046257 664 LQPHDSAIYVLLSNMYAATGHWQERARVRKLMNDRKVKKEAGYSWIEVKNKTYSFLAGDISHPQSNQIYSKLEELSTRLK 743 (838)
Q Consensus 664 l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~~~~~s~i~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~ 743 (838)
-.|+-...|..|+.+|...|++++|..++++..+--.+ .- ...||.+.++...|.+...+++
T Consensus 388 ~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~-~l-----------------G~~Hp~~~~~~~~l~~~~~e~~ 449 (490)
T 3n71_A 388 NNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLV-TH-----------------GPSHPITKDLEAMRMQTEMELR 449 (490)
T ss_dssp TCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-HT-----------------CTTSHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH-Hh-----------------CCCChHHHHHHHHHHHHHHHHH
Confidence 24445667889999999999999999999887542111 01 1469999999888887776655
Q ss_pred H
Q 046257 744 D 744 (838)
Q Consensus 744 ~ 744 (838)
.
T Consensus 450 ~ 450 (490)
T 3n71_A 450 M 450 (490)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0028 Score=68.48 Aligned_cols=125 Identities=13% Similarity=0.155 Sum_probs=82.0
Q ss_pred HhccCCHHHHHHHHHHHHhcCC--ccCC----CchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhcc
Q 046257 591 CTHAGLVDEGQQYFDIMVNEHH--IYPT----MEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISL 664 (838)
Q Consensus 591 ~~~~g~~~~a~~~~~~m~~~~~--~~p~----~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l 664 (838)
+...|++++|..++++...... +.|+ ..+++.+..+|...|++++|+.+++++- .++...+ -.-
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L-----~i~~~~l-----g~~ 366 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTM-----EPYRIFF-----PGS 366 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH-----HHHHHHS-----CSS
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHH-----HhHHHHc-----CCC
Confidence 3345566666666665543221 1121 2346777888888899999988888751 1111111 122
Q ss_pred CCCCchhHHHHHHHHHhcCCchHHHHHHHHHhhCCCccCCceeEEEECCEEEEEeeCCCCCCChHHHHHHHHHHHHHHH
Q 046257 665 QPHDSAIYVLLSNMYAATGHWQERARVRKLMNDRKVKKEAGYSWIEVKNKTYSFLAGDISHPQSNQIYSKLEELSTRLK 743 (838)
Q Consensus 665 ~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~~~~~s~i~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~ 743 (838)
.|+-...|..|+.+|...|++++|..++++..+--.+ .- ...||.+.+++..|.+...+|+
T Consensus 367 Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~-~l-----------------G~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 367 HPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRV-TH-----------------GREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-HT-----------------CTTSHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH-hc-----------------CCCChHHHHHHHHHHHHHHHHh
Confidence 4545567889999999999999999999887642110 00 1469999999999999888876
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0035 Score=52.04 Aligned_cols=62 Identities=15% Similarity=0.170 Sum_probs=45.1
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHHH
Q 046257 545 DLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITACTHAGLVDEGQQYFDIMV 608 (838)
Q Consensus 545 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 608 (838)
+...|..+...|...|++++|++.|++..+ ..|+ ...|..+..++...|++++|.+.|+...
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVE--TDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 566677777777777788888888877777 4454 4566677777777777777777777665
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0018 Score=55.34 Aligned_cols=65 Identities=11% Similarity=0.101 Sum_probs=46.9
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 046257 543 KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITACTHAGLVDEGQQYFDIMVN 609 (838)
Q Consensus 543 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 609 (838)
+.+...|..+...|...|++++|+..|++..+ ..|+ ...+..+..++...|++++|...|+...+
T Consensus 16 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 16 TDNMLLRFTLGKTYAEHEQFDAALPHLRAALD--FDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34567777777777888888888888887777 3454 45666777777777888888887777663
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.73 E-value=0.051 Score=64.37 Aligned_cols=102 Identities=14% Similarity=0.153 Sum_probs=70.4
Q ss_pred HHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHH
Q 046257 524 MYSKKGNIESASEVFKRQRKRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGITFIGVITACTHAGLVDEGQQY 603 (838)
Q Consensus 524 ~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~ 603 (838)
....+|++++|.++.+.+. +...|..+...+.+.|+++.|.+.|.++.+ |..+...+...|+.+...++
T Consensus 661 ~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~ 729 (814)
T 3mkq_A 661 LALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTL 729 (814)
T ss_dssp HHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHH
T ss_pred hhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHH
Confidence 3567899999999987763 567899999999999999999999998754 34455555556766665555
Q ss_pred HHHHHhcCCccCCCchHHHHHHHHHhcCCHHHHHHHHhhC
Q 046257 604 FDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDIINRM 643 (838)
Q Consensus 604 ~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~~m 643 (838)
-+.... .| .++.-..+|.+.|++++|.+++.++
T Consensus 730 ~~~a~~-~~------~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 730 AKDAET-TG------KFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHHHH-TT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHH-cC------chHHHHHHHHHcCCHHHHHHHHHHc
Confidence 444332 11 2344455666677777777765544
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.73 E-value=0.00079 Score=60.65 Aligned_cols=48 Identities=10% Similarity=0.246 Sum_probs=43.1
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcC-----------CchHHHHHHHHHhhC
Q 046257 633 LEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATG-----------HWQERARVRKLMNDR 698 (838)
Q Consensus 633 ~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g-----------~~~~a~~~~~~m~~~ 698 (838)
+++|+..+++. ++++|+++.+|..++++|...| ++++|.+.+++..+.
T Consensus 62 ~~eAi~~le~A------------------L~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 62 IQEAITKFEEA------------------LLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHHHHHHHH------------------HHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH------------------HHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 67899999887 8999999999999999999875 899999999998763
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=96.71 E-value=0.025 Score=63.60 Aligned_cols=146 Identities=8% Similarity=-0.052 Sum_probs=116.0
Q ss_pred CCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhcc
Q 046257 529 GNIESASEVFKRQR---KRDLVSWNSMICGYAQHGH----------TKKALEVFKEMRRQDLEFD-GITFIGVITACTHA 594 (838)
Q Consensus 529 g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~----------~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~ 594 (838)
..-++|.+.++.+. +.+...|+.--..+...|+ ++++++.++++.+ ..|. ..+|..-..++.+.
T Consensus 43 ~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~--~~pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR--VNPKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHc
Confidence 34467788888776 4567889988888877777 8999999999999 4565 56788777888888
Q ss_pred C--CHHHHHHHHHHHHhcCCccC-CCchHHHHHHHHHhcC-CHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCch
Q 046257 595 G--LVDEGQQYFDIMVNEHHIYP-TMEHYSCMVDLYSRAG-MLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSA 670 (838)
Q Consensus 595 g--~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~G-~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~ 670 (838)
| +++++.++++.+.+. .| +...|+--..++.+.| ..++|.++++++ ++.+|.|..
T Consensus 121 ~~~~~~~el~~~~k~l~~---d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~------------------I~~~p~n~s 179 (567)
T 1dce_A 121 PEPNWARELELCARFLEA---DERNFHCWDYRRFVAAQAAVAPAEELAFTDSL------------------ITRNFSNYS 179 (567)
T ss_dssp SSCCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTT------------------TTTTCCCHH
T ss_pred ccccHHHHHHHHHHHHhh---ccccccHHHHHHHHHHHcCCChHHHHHHHHHH------------------HHHCCCCcc
Confidence 9 789999999999854 34 3445666677888889 899999999998 788999999
Q ss_pred hHHHHHHHHHhc--------------CCchHHHHHHHHHhh
Q 046257 671 IYVLLSNMYAAT--------------GHWQERARVRKLMND 697 (838)
Q Consensus 671 ~y~~l~~~y~~~--------------g~~~~a~~~~~~m~~ 697 (838)
+|...+.++... ++++++.+.++....
T Consensus 180 aW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~ 220 (567)
T 1dce_A 180 SWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFF 220 (567)
T ss_dssp HHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHh
Confidence 999988888874 556777777766553
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.66 E-value=0.027 Score=58.19 Aligned_cols=135 Identities=16% Similarity=0.034 Sum_probs=89.0
Q ss_pred CCCCHHHHHHHHHHHH--HcCC---hHHHHHHHHHHHHcCCCCCh-hHHHHHHHHHhc---cC-----CHHHHHHHHHHH
Q 046257 542 RKRDLVSWNSMICGYA--QHGH---TKKALEVFKEMRRQDLEFDG-ITFIGVITACTH---AG-----LVDEGQQYFDIM 607 (838)
Q Consensus 542 ~~~~~~~~~~li~~~~--~~g~---~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~---~g-----~~~~a~~~~~~m 607 (838)
.+.+...|...+.|.. ..++ ..+|+.+|++.++ ..|+. ..+..+..++.. .+ ......+.+...
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~ 267 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNI 267 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHH
Confidence 3457777777776543 3333 4789999999999 68874 344444433321 11 111111122221
Q ss_pred HhcCCc-cCCCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCch
Q 046257 608 VNEHHI-YPTMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQ 686 (838)
Q Consensus 608 ~~~~~~-~p~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~ 686 (838)
. .... ..+...|..+.-.+...|++++|...++++ ++++| +...|+.++.++.-.|+++
T Consensus 268 ~-a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rA------------------l~Ln~-s~~a~~llG~~~~~~G~~~ 327 (372)
T 3ly7_A 268 V-TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTG------------------IDLEM-SWLNYVLLGKVYEMKGMNR 327 (372)
T ss_dssp H-TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH------------------HHHCC-CHHHHHHHHHHHHHTTCHH
T ss_pred H-hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHH------------------HhcCC-CHHHHHHHHHHHHHCCCHH
Confidence 1 1122 334567777766677779999999999988 67887 5778899999999999999
Q ss_pred HHHHHHHHHhhC
Q 046257 687 ERARVRKLMNDR 698 (838)
Q Consensus 687 ~a~~~~~~m~~~ 698 (838)
+|.+.+++....
T Consensus 328 eA~e~~~~AlrL 339 (372)
T 3ly7_A 328 EAADAYLTAFNL 339 (372)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 999999877653
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0024 Score=57.52 Aligned_cols=90 Identities=16% Similarity=0.080 Sum_probs=61.7
Q ss_pred HhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCCh----------HHHHHHHHHHHHcCCCCC-hhHHHHHHHHH
Q 046257 526 SKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHT----------KKALEVFKEMRRQDLEFD-GITFIGVITAC 591 (838)
Q Consensus 526 ~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~----------~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~ 591 (838)
.+.+.+++|.+.++... +.+...|+.+..++...|++ ++|+..|++.++ +.|+ ..+|..+..+|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~--ldP~~~~A~~~LG~ay 90 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL--IDPKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHH--hCcCcHHHHHHHHHHH
Confidence 34556777777776654 45677777777777776654 588888888888 6676 35677777777
Q ss_pred hccC-----------CHHHHHHHHHHHHhcCCccCCCchH
Q 046257 592 THAG-----------LVDEGQQYFDIMVNEHHIYPTMEHY 620 (838)
Q Consensus 592 ~~~g-----------~~~~a~~~~~~m~~~~~~~p~~~~y 620 (838)
...| ++++|.++|++.+ .+.|+...|
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl---~l~P~~~~y 127 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAV---DEQPDNTHY 127 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHH---HHCTTCHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHH---HhCCCCHHH
Confidence 7654 6777777777776 345665444
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0017 Score=70.02 Aligned_cols=115 Identities=9% Similarity=0.029 Sum_probs=72.7
Q ss_pred cCCHHHHHHHHHHHHhcC--CccCC----CchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCC
Q 046257 594 AGLVDEGQQYFDIMVNEH--HIYPT----MEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPH 667 (838)
Q Consensus 594 ~g~~~~a~~~~~~m~~~~--~~~p~----~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~ 667 (838)
.|++++|..++++..... -+-|+ ..+++.|..+|...|++++|+.+++++- .++...+ -.-.|+
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL-----~i~~~~l-----G~~Hp~ 380 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKII-----KPYSKHY-----PVYSLN 380 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-----HHHHHHS-----CSSCHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH-----HHHHHHc-----CCCChH
Confidence 355666666655543221 11222 2457778888888999999999888761 1111111 112454
Q ss_pred CchhHHHHHHHHHhcCCchHHHHHHHHHhhCCCccCCceeEEEECCEEEEEeeCCCCCCChHHHHHHHH
Q 046257 668 DSAIYVLLSNMYAATGHWQERARVRKLMNDRKVKKEAGYSWIEVKNKTYSFLAGDISHPQSNQIYSKLE 736 (838)
Q Consensus 668 ~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~~~~~s~i~~~~~~~~f~~~~~~~~~~~~i~~~l~ 736 (838)
-...|..|+.+|...|++++|..++++..+--.+ . -...||.+.+++..|+
T Consensus 381 ~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~-~-----------------lG~~Hp~~~~l~~~l~ 431 (433)
T 3qww_A 381 VASMWLKLGRLYMGLENKAAGEKALKKAIAIMEV-A-----------------HGKDHPYISEIKQEIE 431 (433)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-H-----------------TCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH-H-----------------cCCCChHHHHHHHHHh
Confidence 5567889999999999999999999887642111 0 0146998888777665
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=96.30 E-value=0.02 Score=45.89 Aligned_cols=60 Identities=17% Similarity=0.336 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHHH
Q 046257 547 VSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITACTHAGLVDEGQQYFDIMV 608 (838)
Q Consensus 547 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 608 (838)
..|..+...|...|++++|+..|++..+. .|+ ..++..+..++...|++++|..+|+...
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 70 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 70 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34455555555555555555555555552 232 3344555555555555666655555554
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0085 Score=49.28 Aligned_cols=58 Identities=19% Similarity=0.386 Sum_probs=52.8
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCch-hHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 046257 623 MVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSA-IYVLLSNMYAATGHWQERARVRKLMNDR 698 (838)
Q Consensus 623 lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~-~y~~l~~~y~~~g~~~~a~~~~~~m~~~ 698 (838)
.+..+.+.|++++|.+.+++. ++++|+++. .+..++.+|...|++++|.+.+++..+.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~a------------------l~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEF------------------LQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHH------------------HHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHH------------------HHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 567788999999999999987 788999999 9999999999999999999999998753
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=96.25 E-value=0.072 Score=47.08 Aligned_cols=107 Identities=7% Similarity=-0.056 Sum_probs=66.5
Q ss_pred hhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCHHHHHHHHHHHHH----cCChHHHHHH
Q 046257 494 AAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQR-KRDLVSWNSMICGYAQ----HGHTKKALEV 568 (838)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~-~~~~~~~~~li~~~~~----~g~~~~A~~l 568 (838)
.+.+.+...+....+.|... .. |..+|...+.+++|.+.|++.. ..+...++.|...|.. .++.++|++.
T Consensus 9 ~d~~~A~~~~~~aa~~g~~~---a~--lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~ 83 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEMF---GC--LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQY 83 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCTT---HH--HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCCHh---hh--HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence 34444555555554444111 11 4555666666666777776654 4466677777777776 6777778888
Q ss_pred HHHHHHcCCCCChhHHHHHHHHHhc----cCCHHHHHHHHHHHH
Q 046257 569 FKEMRRQDLEFDGITFIGVITACTH----AGLVDEGQQYFDIMV 608 (838)
Q Consensus 569 ~~~m~~~g~~pd~~t~~~ll~a~~~----~g~~~~a~~~~~~m~ 608 (838)
|++..+.| +......|...+.. .++.++|.++|+...
T Consensus 84 ~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa 124 (138)
T 1klx_A 84 YSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKAC 124 (138)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred HHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHH
Confidence 77777754 44555566666666 677777777777765
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=95.82 E-value=0.013 Score=61.82 Aligned_cols=395 Identities=12% Similarity=0.106 Sum_probs=198.1
Q ss_pred cccHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcccHHHHHHHhccCCChhhHHHHHHHHHHhCCCCChhHHHHHHHH
Q 046257 43 FVEYNRLLFEYCRDSLHQEALNLFLGIRRLGLPLFGSTLSSVLKTCGCLFDHVFGRQVHCECVKSGFARDVNVSTSLVDL 122 (838)
Q Consensus 43 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 122 (838)
...|..|..+....+...+|++.|=+ .-|+..|..++.++.+.|..+.-...+....+. ..++.+=+.|+-+
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIk------A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~a 125 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFA 125 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCC------CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHh------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHH
Confidence 34577777777777777777765522 235666777788877777777776666554443 3445556677777
Q ss_pred HHhCCChHH----------------------------HHHHHccCCC------------------------CCcchHHHH
Q 046257 123 YMRTNNVED----------------------------GRRVFDDMNE------------------------SNVVSWTSL 150 (838)
Q Consensus 123 y~~~g~~~~----------------------------A~~~f~~m~~------------------------~~~~~~~~l 150 (838)
|++.+++.+ |.-+|..++. .++.||-.+
T Consensus 126 yAk~~rL~elEefl~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV 205 (624)
T 3lvg_A 126 LAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEV 205 (624)
T ss_dssp HHTSCSSSTTTSTTSCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHH
T ss_pred HHhhCcHHHHHHHHcCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHH
Confidence 777766543 2222222221 244455555
Q ss_pred HHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHcCCCh
Q 046257 151 LSGYARNKMNDRVLELFHRMQVEGIKPNSFTFSTVLGVLADEGIVATAVQVHTMVIKNGGEVVTSVCNALISMYLKSKMV 230 (838)
Q Consensus 151 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~ 230 (838)
-.+|...+.++-|.-.--.+. ..+.-...++.-|-..|.+++...+++..+... .....+++-|.-.|+|- +.
T Consensus 206 ~~ACvd~~EfrLAqicGLniI-----vhadeL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY-~P 278 (624)
T 3lvg_A 206 CFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KP 278 (624)
T ss_dssp THHHHHSCTTTTTTHHHHHHH-----CCSSCCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS-CT
T ss_pred HHHHhCchHHHHHHHhcchhc-----ccHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc-CH
Confidence 555555555544433222221 111112233444555566666555555544211 34567788888888875 44
Q ss_pred hHHHHHHhcCCC----C-------CcchHHHHHHHHHhCCChHHHHHHHHHhhhC-CCCCChhhHHHHHHHHhccCcHHH
Q 046257 231 RDARAVFDGMED----R-------DSITWNSMVAGYVTNELHMEAFETFNNMGLA-GAELTRSTFVSVIKLCATTKELRL 298 (838)
Q Consensus 231 ~~A~~~f~~m~~----~-------~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~t~~~ll~~~~~~~~~~~ 298 (838)
++..+-++..-. | ....|.-++-.|.+-..++.|... |.+. ....+...| -....+..+.+.
T Consensus 279 eKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~lt---Mi~h~~~Aw~h~~F---kdii~KVaN~Ei 352 (624)
T 3lvg_A 279 QKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT---MMNHPTDAWKEGQF---KDIITKVANVEL 352 (624)
T ss_dssp THHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHT---TTSCHHHHCCGGGG---TTTGGGCSCSHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHH---HHhCChhhccHHHH---HHHHHHcchHHH
Confidence 444444433221 2 445688888888888888766543 2211 001111111 111222333332
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHHhccc------------CCCeeehH-HHHHHHHHcCChHH
Q 046257 299 ARQLHSQVLKNGIDFDHNIRTGLMVAYSKCGKMEDASKIFSMMRE------------MKDVVSWT-AMISGHLQNGAIDL 365 (838)
Q Consensus 299 a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~------------~~~~~~~~-~li~~~~~~g~~~~ 365 (838)
--+..... +.-.+...+-|+..+...=+...+.++|++... ..|...-| ++-..|....+++.
T Consensus 353 yYKAi~FY----L~e~P~lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEEEDy~~ 428 (624)
T 3lvg_A 353 YYRAIQFY----LEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQA 428 (624)
T ss_dssp HHHHHHHH----TTSCCTTSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHH----HHhChHHHHHHHHhccccCChHHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHH
Confidence 22222222 122333344444444444444444444444321 23333333 34445555555442
Q ss_pred HHHHHHHhhhcCCCCCcccHHHHHhhCCCCChhHHHHHHHHhhccCCcchhhHHHHHHHHcCCHHHHHHHHHhcCCCCcc
Q 046257 366 AVNFFCQMTREGVRPNGFTYSIILTAQPAVSPFQVHAHIIKTNYEKSFSVGTALLNAYVKKGILDEAAKVFELIDEKDIV 445 (838)
Q Consensus 366 A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~ 445 (838)
...-+.++.+...+.+...+.++.+ ......-...|.+.++++++..+..+= .
T Consensus 429 -------------------LR~SId~ydNFD~i~LA~rLEkHeL---~eFRrIAA~LYkkn~rw~qsi~l~KkD-----k 481 (624)
T 3lvg_A 429 -------------------LRTSIDAYDNFDNISLAQRLEKHEL---IEFRRIAAYLFKGNNRWKQSVELCKKD-----S 481 (624)
T ss_dssp -------------------HHHTTSSCCCSCTTHHHHHHHTCSS---HHHHHHHHHHHHTTCHHHHHSSCSSTT-----C
T ss_pred -------------------HHHHHHHhccccHHHHHHHHhhCch---HHHHHHHHHHHHhcccHHHHHHHHHhc-----c
Confidence 1222222333333333333333211 112223344577788888777654321 2
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCC
Q 046257 446 AWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAP 492 (838)
Q Consensus 446 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 492 (838)
.|.-.|..-+..|+.+-|.++++-..+.| +...|...|-.|..+
T Consensus 482 lykDAietAa~S~~~elaeeLL~yFv~~g---~~EcF~a~LytCYdL 525 (624)
T 3lvg_A 482 LYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDL 525 (624)
T ss_dssp CTTGGGTTTTTCCCTTHHHHHHHHHHHHC---STHHHHHHHHHTSSS
T ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHhhc
Confidence 23333444556777777887777777644 445677777788776
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=95.67 E-value=0.037 Score=59.69 Aligned_cols=91 Identities=18% Similarity=0.141 Sum_probs=59.1
Q ss_pred HHHHHHcCChHHHHHHHHHHHHc---CCCCCh----hHHHHHHHHHhccCCHHHHHHHHHHHHhc----CCc-cCC-Cch
Q 046257 553 ICGYAQHGHTKKALEVFKEMRRQ---DLEFDG----ITFIGVITACTHAGLVDEGQQYFDIMVNE----HHI-YPT-MEH 619 (838)
Q Consensus 553 i~~~~~~g~~~~A~~l~~~m~~~---g~~pd~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~----~~~-~p~-~~~ 619 (838)
+..+.+.|++++|++++++.++. -+.|++ .+++.+..+|...|++++|..++++...- +|- -|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 34455667777777777777652 123443 35677777777777777777777765422 221 122 234
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhC
Q 046257 620 YSCMVDLYSRAGMLEKAMDIINRM 643 (838)
Q Consensus 620 y~~lv~~l~r~G~~~~A~~~~~~m 643 (838)
|+.|..+|...|++++|+.+++++
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~A 397 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLA 397 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Confidence 777888888888888888888875
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=95.56 E-value=0.028 Score=60.52 Aligned_cols=85 Identities=8% Similarity=0.063 Sum_probs=58.1
Q ss_pred cCChHHHHHHHHHHHHc---CCCCCh----hHHHHHHHHHhccCCHHHHHHHHHHHHhc----CCc-cCCC-chHHHHHH
Q 046257 559 HGHTKKALEVFKEMRRQ---DLEFDG----ITFIGVITACTHAGLVDEGQQYFDIMVNE----HHI-YPTM-EHYSCMVD 625 (838)
Q Consensus 559 ~g~~~~A~~l~~~m~~~---g~~pd~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~----~~~-~p~~-~~y~~lv~ 625 (838)
.|++++|+.++++.++. -+.|++ .+++.|..+|...|++++|..++++...- +|- -|+. ..|+.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 46677777777766542 233442 46777777777788888887777765522 221 1322 35888999
Q ss_pred HHHhcCCHHHHHHHHhhC
Q 046257 626 LYSRAGMLEKAMDIINRM 643 (838)
Q Consensus 626 ~l~r~G~~~~A~~~~~~m 643 (838)
+|...|++++|+.++++.
T Consensus 391 ~~~~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKA 408 (433)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHH
Confidence 999999999999999876
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.54 E-value=0.047 Score=48.50 Aligned_cols=92 Identities=11% Similarity=0.065 Sum_probs=68.5
Q ss_pred hHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccC---CHHHHHHHHHHHHhcCCccC--CCchHHHHHHHHHhcCCHHHH
Q 046257 562 TKKALEVFKEMRRQDLEFDGITFIGVITACTHAG---LVDEGQQYFDIMVNEHHIYP--TMEHYSCMVDLYSRAGMLEKA 636 (838)
Q Consensus 562 ~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g---~~~~a~~~~~~m~~~~~~~p--~~~~y~~lv~~l~r~G~~~~A 636 (838)
...+.+-|.+..+.|. ++..+-..+..++.+++ ++++|..+++...+.. .| +.+.+-.+.-++.|.|++++|
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~--~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG--SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS--CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--CccchHHHHHHHHHHHHHccCHHHH
Confidence 4556677777777664 67777777888888888 6779999999888542 24 244445567788999999999
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHH
Q 046257 637 MDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVL 674 (838)
Q Consensus 637 ~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~ 674 (838)
.+.++.. ++++|+|..+..+
T Consensus 91 ~~y~~~l------------------L~ieP~n~QA~~L 110 (152)
T 1pc2_A 91 LKYVRGL------------------LQTEPQNNQAKEL 110 (152)
T ss_dssp HHHHHHH------------------HHHCTTCHHHHHH
T ss_pred HHHHHHH------------------HhcCCCCHHHHHH
Confidence 9999987 8999977655443
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=95.37 E-value=0.37 Score=49.75 Aligned_cols=74 Identities=9% Similarity=0.111 Sum_probs=50.7
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCCchHH
Q 046257 543 KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYS 621 (838)
Q Consensus 543 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~ 621 (838)
+.+...|.++...+...|++++|+..++++... .|+...|..+...+...|+.++|.+.|+.... +.|...+|.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L--n~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr---L~P~~~t~~ 347 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDL--EMSWLNYVLLGKVYEMKGMNREAADAYLTAFN---LRPGANTLY 347 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSCSHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCcChHH
Confidence 446677777766666677888888888887774 36666666666667777888888877777663 355555543
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=95.29 E-value=0.064 Score=43.75 Aligned_cols=79 Identities=14% Similarity=0.134 Sum_probs=48.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCC-hh-HHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCCc-hHHHHHHHHH
Q 046257 552 MICGYAQHGHTKKALEVFKEMRRQDLEFD-GI-TFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTME-HYSCMVDLYS 628 (838)
Q Consensus 552 li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~-~y~~lv~~l~ 628 (838)
....+...|++++|++.|++..+ ..|+ .. .+..+..++...|++++|.+.|+...+. .|+.. .+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~------ 74 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQ--TEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL---NPDSPALQAR------ 74 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH--HCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTSTHHHHH------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCcHHHHHH------
Confidence 34556677777777777777777 3454 34 5666666777777777777777776632 34332 1110
Q ss_pred hcCCHHHHHHHHhhC
Q 046257 629 RAGMLEKAMDIINRM 643 (838)
Q Consensus 629 r~G~~~~A~~~~~~m 643 (838)
+.+++|...+++.
T Consensus 75 --~~~~~a~~~~~~~ 87 (99)
T 2kc7_A 75 --KMVMDILNFYNKD 87 (99)
T ss_dssp --HHHHHHHHHHCCT
T ss_pred --HHHHHHHHHHHHH
Confidence 4566666666655
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=95.24 E-value=0.41 Score=56.43 Aligned_cols=100 Identities=15% Similarity=0.100 Sum_probs=69.6
Q ss_pred HHcCCChHHHHH-HHHhcccCCCeeehHHHHHHHHHcCChHHHHHHHHHhhhcCCCCCcccHHHHHhhCCCCChhHHHHH
Q 046257 325 YSKCGKMEDASK-IFSMMREMKDVVSWTAMISGHLQNGAIDLAVNFFCQMTREGVRPNGFTYSIILTAQPAVSPFQVHAH 403 (838)
Q Consensus 325 y~~~g~~~~A~~-~f~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~ 403 (838)
....+++++|.+ ++..++ +......++..+.+.|..++|+++.++-.
T Consensus 609 ~~~~~~~~~a~~~~l~~i~---~~~~~~~~~~~l~~~~~~~~a~~~~~~~~----------------------------- 656 (814)
T 3mkq_A 609 LTLRGEIEEAIENVLPNVE---GKDSLTKIARFLEGQEYYEEALNISPDQD----------------------------- 656 (814)
T ss_dssp HHHTTCHHHHHHHTGGGCC---CHHHHHHHHHHHHHTTCHHHHHHHCCCHH-----------------------------
T ss_pred HHHhCCHHHHHHHHHhcCC---chHHHHHHHHHHHhCCChHHheecCCCcc-----------------------------
Confidence 345677777776 543322 11122666777777888888876653211
Q ss_pred HHHhhccCCcchhhHHHHHHHHcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhc
Q 046257 404 IIKTNYEKSFSVGTALLNAYVKKGILDEAAKVFELIDEKDIVAWSAMLAGYAQIGDTEGAVKIYRQLTS 472 (838)
Q Consensus 404 ~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 472 (838)
.-......+|++++|.++.+.+. +...|..+...+.+.|+++.|.+.|.++..
T Consensus 657 --------------~~f~~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d 709 (814)
T 3mkq_A 657 --------------QKFELALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD 709 (814)
T ss_dssp --------------HHHHHHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC
T ss_pred --------------hheehhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC
Confidence 12334567899999999987764 457899999999999999999999998754
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=94.81 E-value=0.037 Score=54.75 Aligned_cols=112 Identities=12% Similarity=0.093 Sum_probs=81.0
Q ss_pred hcCCHHHHHHHHHhcCCCC--HHHHHHHHHH-HHHc--CC------hHHHHHHHHHHHHcCCCCC---hhHHHHHHHHHh
Q 046257 527 KKGNIESASEVFKRQRKRD--LVSWNSMICG-YAQH--GH------TKKALEVFKEMRRQDLEFD---GITFIGVITACT 592 (838)
Q Consensus 527 k~g~~~~A~~~f~~~~~~~--~~~~~~li~~-~~~~--g~------~~~A~~l~~~m~~~g~~pd---~~t~~~ll~a~~ 592 (838)
+.|+..+-.+.+.+..+.+ ...|..++.+ ++.. |. ..+|..++++.++ +.|+ ...|..+...|.
T Consensus 133 ~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~ 210 (301)
T 3u64_A 133 FSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACD--LWPSYQEGAVWNVLTKFYA 210 (301)
T ss_dssp TSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHH
T ss_pred HhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHH
Confidence 3455555555566665444 3567776653 3432 33 4678888888888 7787 457777888888
Q ss_pred c-----cCCHHHHHHHHHHHHhcCCccC--CCchHHHHHHHHHhc-CCHHHHHHHHhhC
Q 046257 593 H-----AGLVDEGQQYFDIMVNEHHIYP--TMEHYSCMVDLYSRA-GMLEKAMDIINRM 643 (838)
Q Consensus 593 ~-----~g~~~~a~~~~~~m~~~~~~~p--~~~~y~~lv~~l~r~-G~~~~A~~~~~~m 643 (838)
. .|+.++|.++|++..+ +.| +..++..+.+.|++. |+.++|.+.+++.
T Consensus 211 ~vPp~~gGd~ekA~~~ferAL~---LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kA 266 (301)
T 3u64_A 211 AAPESFGGGMEKAHTAFEHLTR---YCSAHDPDHHITYADALCIPLNNRAGFDEALDRA 266 (301)
T ss_dssp HSCTTTTCCHHHHHHHHHHHHH---HCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred hCCCccCCCHHHHHHHHHHHHH---hCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 7 4999999999999883 467 377888888999884 9999999999876
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=94.57 E-value=0.12 Score=45.86 Aligned_cols=106 Identities=9% Similarity=0.040 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHhcCCccCCCchHHHHHHHHHhcC---CHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccC-C-CCchh
Q 046257 597 VDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAG---MLEKAMDIINRMPFAASATVWRTVLAACRLISLQ-P-HDSAI 671 (838)
Q Consensus 597 ~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G---~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~-P-~~~~~ 671 (838)
+..+.+.|...... +. ++.++.-.+..+|.+.. +++++..++++. ++.+ | ++...
T Consensus 14 l~~~~~~y~~e~~~-~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~l------------------l~~~~p~~~rd~ 73 (152)
T 1pc2_A 14 LLKFEKKFQSEKAA-GS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEEL------------------LPKGSKEEQRDY 73 (152)
T ss_dssp HHHHHHHHHHHHHT-TC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHH------------------HHHSCHHHHHHH
T ss_pred HHHHHHHHHHHHcc-CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH------------------HhcCCccchHHH
Confidence 45556666655432 33 67777777889999988 677999999876 5556 6 56788
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHhhCCCccCCceeEEEECCEEEEEeeCCCCCCChHHHHHHHHHHHHHHHHcCcc
Q 046257 672 YVLLSNMYAATGHWQERARVRKLMNDRKVKKEAGYSWIEVKNKTYSFLAGDISHPQSNQIYSKLEELSTRLKDAGYK 748 (838)
Q Consensus 672 y~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~~~~~s~i~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~~~g~~ 748 (838)
++.|+-.|.+.|++++|.+.++...+. .|...+-....+.+.+.+++.|++
T Consensus 74 lY~LAv~~~kl~~Y~~A~~y~~~lL~i--------------------------eP~n~QA~~Lk~~ie~~~~kdgl~ 124 (152)
T 1pc2_A 74 VFYLAVGNYRLKEYEKALKYVRGLLQT--------------------------EPQNNQAKELERLIDKAMKKDGLV 124 (152)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHH--------------------------CTTCHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhc--------------------------CCCCHHHHHHHHHHHHHHHHhhHH
Confidence 889999999999999999999998762 344445555555566777787765
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=94.12 E-value=0.14 Score=42.55 Aligned_cols=73 Identities=10% Similarity=0.115 Sum_probs=49.0
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhcCC-----ccCCCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 046257 585 IGVITACTHAGLVDEGQQYFDIMVNEHH-----IYPTMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAAC 659 (838)
Q Consensus 585 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~-----~~p~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c 659 (838)
..+...+...|+++.|...|+...+... -.+....+..+...|.+.|++++|...++++
T Consensus 9 ~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~a---------------- 72 (104)
T 2v5f_A 9 FELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKL---------------- 72 (104)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHH----------------
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHH----------------
Confidence 3455555566666666666655543221 1123456788889999999999999999987
Q ss_pred HHhccCCCCchhHHHH
Q 046257 660 RLISLQPHDSAIYVLL 675 (838)
Q Consensus 660 ~~~~l~P~~~~~y~~l 675 (838)
++++|+++.+...+
T Consensus 73 --l~l~P~~~~~~~n~ 86 (104)
T 2v5f_A 73 --LELDPEHQRANGNL 86 (104)
T ss_dssp --HHHCTTCHHHHHHH
T ss_pred --HhcCCCCHHHHhhH
Confidence 78888887764444
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=94.06 E-value=0.24 Score=42.29 Aligned_cols=94 Identities=12% Similarity=0.073 Sum_probs=66.3
Q ss_pred ChHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHH---HHHHHHHHHhcCCccC--CCchHHHHHHHHHhcCCHHH
Q 046257 561 HTKKALEVFKEMRRQDLEFDGITFIGVITACTHAGLVDE---GQQYFDIMVNEHHIYP--TMEHYSCMVDLYSRAGMLEK 635 (838)
Q Consensus 561 ~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~---a~~~~~~m~~~~~~~p--~~~~y~~lv~~l~r~G~~~~ 635 (838)
....+.+-|.+....|. |+..|-..+..++.++....+ |..+++...+.. .| ..+..-.|.-++.|.|++++
T Consensus 16 ~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~--~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG--SKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS--CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHhhhHHH
Confidence 34556666666666554 676666678888888887655 999998887431 13 22333446678999999999
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHH
Q 046257 636 AMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLL 675 (838)
Q Consensus 636 A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l 675 (838)
|.+.++.+ ++.+|+|..+..+.
T Consensus 93 A~~~~~~l------------------L~~eP~n~QA~~Lk 114 (126)
T 1nzn_A 93 ALKYVRGL------------------LQTEPQNNQAKELE 114 (126)
T ss_dssp HHHHHHHH------------------HHHCTTCHHHHHHH
T ss_pred HHHHHHHH------------------HHhCCCCHHHHHHH
Confidence 99999987 88899777655443
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.98 E-value=2 Score=39.00 Aligned_cols=104 Identities=14% Similarity=0.180 Sum_probs=76.6
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHH
Q 046257 523 TMYSKKGNIESASEVFKRQRKRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGITFIGVITACTHAGLVDEGQQ 602 (838)
Q Consensus 523 ~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~ 602 (838)
+....+|+++.|.++.+.+ .+...|..|......+|+.+-|.+.|++..+ |..+.-.|.-.|+.+.-.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 3456889999999998877 4678899999999999999999999988755 4455555666777766655
Q ss_pred HHHHHHhcCCccCCCchHHHHHHHHHhcCCHHHHHHHHhhCC
Q 046257 603 YFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDIINRMP 644 (838)
Q Consensus 603 ~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~~m~ 644 (838)
+-+... ..| -++.-...+.-.|+++++.+++.+..
T Consensus 82 la~iA~-~~g------~~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 82 MQNIAQ-TRE------DFGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHHH-HTT------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHH-HCc------cHHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 544433 212 24555556667899999999888763
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=93.57 E-value=2.4 Score=36.22 Aligned_cols=85 Identities=14% Similarity=0.091 Sum_probs=62.7
Q ss_pred cCCHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHH
Q 046257 594 AGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYV 673 (838)
Q Consensus 594 ~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~ 673 (838)
.|++......+-.+- -+.++..--++.+..+|+.|.-.+++... +.-+|-++...+
T Consensus 74 C~NlKrVi~C~~~~n------~~se~vd~ALd~lv~~~KkDqLdki~~~~------------------l~n~~~~~~~l~ 129 (172)
T 1wy6_A 74 CQNLKSVVECGVINN------TLNEHVNKALDILVIQGKRDKLEEIGREI------------------LKNNEVSASILV 129 (172)
T ss_dssp CSCTHHHHHHHHHTT------CCCHHHHHHHHHHHHTTCHHHHHHHHHHH------------------C--CCSCHHHHH
T ss_pred hhcHHHHHHHHHHhc------chHHHHHHHHHHHHHhccHhHHHHHHHHH------------------hccCCCChHHHH
Confidence 445555555444331 24556666678888888888888888773 122444889999
Q ss_pred HHHHHHHhcCCchHHHHHHHHHhhCCCcc
Q 046257 674 LLSNMYAATGHWQERARVRKLMNDRKVKK 702 (838)
Q Consensus 674 ~l~~~y~~~g~~~~a~~~~~~m~~~g~~~ 702 (838)
-++++|.+.|...+|.+++++.-++|++.
T Consensus 130 kia~Ay~Klg~~r~a~eLl~~AC~kG~kE 158 (172)
T 1wy6_A 130 AIANALRRVGDERDATTLLIEACKKGEKE 158 (172)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHhcchhhHHHHHHHHHHhhhHH
Confidence 99999999999999999999999999863
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=93.33 E-value=0.89 Score=36.61 Aligned_cols=63 Identities=6% Similarity=-0.054 Sum_probs=40.5
Q ss_pred CCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHcCCCCCh-hHHHHHHHHHhccCCHHHHHHHHHHHH
Q 046257 544 RDLVSWNSMICGYAQHGH---TKKALEVFKEMRRQDLEFDG-ITFIGVITACTHAGLVDEGQQYFDIMV 608 (838)
Q Consensus 544 ~~~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~ 608 (838)
.|...|..+..++...++ .++|..+|++.++ ..|+. .....+...+...|++++|..+|+.+.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~--~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l 70 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQ--LEPYNEAALSLIANDHFISFRFQEAIDTWVLLL 70 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH--HCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 355556666666654444 5777777777777 56664 344555556677777777777777776
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=93.27 E-value=0.13 Score=50.92 Aligned_cols=87 Identities=9% Similarity=0.133 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHhcCCccCC---CchHHHHHHHHHhc-----CCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCC
Q 046257 597 VDEGQQYFDIMVNEHHIYPT---MEHYSCMVDLYSRA-----GMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHD 668 (838)
Q Consensus 597 ~~~a~~~~~~m~~~~~~~p~---~~~y~~lv~~l~r~-----G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~ 668 (838)
+.+|...+++.+ .+.|+ -..|..+..+|.+. |+.++|++.|++. ++++|+.
T Consensus 179 l~~A~a~lerAl---eLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferA------------------L~LnP~~ 237 (301)
T 3u64_A 179 VHAAVMMLERAC---DLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHL------------------TRYCSAH 237 (301)
T ss_dssp HHHHHHHHHHHH---HHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHH------------------HHHCCTT
T ss_pred HHHHHHHHHHHH---HhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHH------------------HHhCCCC
Confidence 456666666655 45676 34688899999995 9999999999988 8999974
Q ss_pred -chhHHHHHHHHHhc-CCchHHHHHHHHHhhCCCccCC
Q 046257 669 -SAIYVLLSNMYAAT-GHWQERARVRKLMNDRKVKKEA 704 (838)
Q Consensus 669 -~~~y~~l~~~y~~~-g~~~~a~~~~~~m~~~g~~~~~ 704 (838)
..+++.++..|+.. |+.+++.+.+++...-..+..|
T Consensus 238 ~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P 275 (301)
T 3u64_A 238 DPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVP 275 (301)
T ss_dssp CSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCS
T ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCC
Confidence 99999999999995 9999999999999876655434
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.19 E-value=2.9 Score=37.99 Aligned_cols=128 Identities=15% Similarity=0.095 Sum_probs=82.8
Q ss_pred hHcCCChhHHHHHHhcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHH
Q 046257 224 YLKSKMVRDARAVFDGMEDRDSITWNSMVAGYVTNELHMEAFETFNNMGLAGAELTRSTFVSVIKLCATTKELRLARQLH 303 (838)
Q Consensus 224 y~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 303 (838)
...+|+++.|.++.+.+ .+...|..+.....+.|+++-|.+.|.+... |..+.-.|...|+.+.-..+-
T Consensus 15 AL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kla 83 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKMQ 83 (177)
T ss_dssp HHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHHH
Confidence 44677888887777665 3566788888888888888888888887653 344444455566766666555
Q ss_pred HHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHHhcccCCCeeehHHHHHHHHHcCChHHHHHHHHHhh
Q 046257 304 SQVLKNGIDFDHNIRTGLMVAYSKCGKMEDASKIFSMMREMKDVVSWTAMISGHLQNGAIDLAVNFFCQMT 374 (838)
Q Consensus 304 ~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 374 (838)
+.....| -++.-...+.-.|+++++.++|.+.. . |.--+......|..+.|.++.+++-
T Consensus 84 ~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~-r-----~~eA~~~A~t~g~~~~a~~~~~~~~ 142 (177)
T 3mkq_B 84 NIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGG-S-----LPLAYAVAKANGDEAAASAFLEQAE 142 (177)
T ss_dssp HHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTT-C-----HHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCC-C-----hHHHHHHHHHcCcHHHHHHHHHHhC
Confidence 5554444 23444555667788888888887765 1 2222222234677788888877763
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=91.47 E-value=21 Score=39.93 Aligned_cols=250 Identities=10% Similarity=0.059 Sum_probs=127.9
Q ss_pred hHHHHHHHHcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCChhhH
Q 046257 417 TALLNAYVKKGILDEAAKVFELIDEKDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAV 496 (838)
Q Consensus 417 ~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~ 496 (838)
+.-+..+.+.+++.....++.. ...+...-.....+....|+..+|.....++-..|- ........++...... +.+
T Consensus 76 ~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~-~~p~~c~~l~~~~~~~-g~l 152 (618)
T 1qsa_A 76 SRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK-SQPNACDKLFSVWRAS-GKQ 152 (618)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS-CCCTHHHHHHHHHHHT-TCS
T ss_pred HHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCC-CCcHHHHHHHHHHHHC-CCC
Confidence 4455667778888888876665 333444444556667778887778777777766542 2223334444444321 111
Q ss_pred ---HHHHHHHHHHHHh-----------cCCCc-hhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHH---HHHHHHHHHH
Q 046257 497 ---EQGKQFHACSIKA-----------KLNNA-LCVSSALVTMYSKKGNIESASEVFKRQRKRDLVS---WNSMICGYAQ 558 (838)
Q Consensus 497 ---~~~~~~~~~~~~~-----------~~~~~-~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~---~~~li~~~~~ 558 (838)
+.-..+ ..+... .+.++ .....+++..+.+-..+. ...... .++... +..-+.-+++
T Consensus 153 t~~~~~~R~-~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~~---~~~~~~-~~~~~~~~~~~~~~~rlar 227 (618)
T 1qsa_A 153 DPLAYLERI-RLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTVL---TFARTT-GATDFTRQMAAVAFASVAR 227 (618)
T ss_dssp CHHHHHHHH-HHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHH---HHHHHS-CCCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHH-HHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhHH---HHHhcc-CCChhhHHHHHHHHHHHHh
Confidence 111111 111110 11111 122233333333322221 111111 112111 1111222333
Q ss_pred cCChHHHHHHHHHHHHcCCCCChhH----HHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHhcCCHH
Q 046257 559 HGHTKKALEVFKEMRRQDLEFDGIT----FIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLE 634 (838)
Q Consensus 559 ~g~~~~A~~l~~~m~~~g~~pd~~t----~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~ 634 (838)
.+.+.|..+|......+ ..+... ...+.......+...++...+...... .++.....-.+....+.|+++
T Consensus 228 -~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~ 302 (618)
T 1qsa_A 228 -QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRR 302 (618)
T ss_dssp -HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHH
T ss_pred -cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHH
Confidence 37899999999887643 223322 222333334445355667777665422 123333334444556789999
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhh
Q 046257 635 KAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMND 697 (838)
Q Consensus 635 ~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~ 697 (838)
.|.+.|+.|+-.+ +..+...+=++..+.+.|+-++|..+++..-+
T Consensus 303 ~a~~~~~~l~~~~------------------~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 303 GLNTWLARLPMEA------------------KEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHHSCTTG------------------GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHccccc------------------cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 9999999996322 11344455667778888999999888877653
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=90.11 E-value=17 Score=36.54 Aligned_cols=131 Identities=10% Similarity=0.111 Sum_probs=77.9
Q ss_pred HHHHHHHhHcCCChhHHHHHHhcCCCCCcchHHHHHHHHHhCCChHHHHHH----HHHhhhCCCCCChhhHHHHHHHHhc
Q 046257 217 CNALISMYLKSKMVRDARAVFDGMEDRDSITWNSMVAGYVTNELHMEAFET----FNNMGLAGAELTRSTFVSVIKLCAT 292 (838)
Q Consensus 217 ~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~l----~~~m~~~g~~p~~~t~~~ll~~~~~ 292 (838)
+.++..=|.+.+++++|.+++.. -...+.+.|+...|.++ .+-..+.+++++..+...++..+..
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~ 104 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAE 104 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 34555667788888888877642 23345667777666664 3444556788888777777776655
Q ss_pred cC-----cHHHHHHHHHHHHHhCC--CCChhHHHHHHHHHHcCCChHHHHHHHHhcccCCCeeehHHHHHHHHH
Q 046257 293 TK-----ELRLARQLHSQVLKNGI--DFDHNIRTGLMVAYSKCGKMEDASKIFSMMREMKDVVSWTAMISGHLQ 359 (838)
Q Consensus 293 ~~-----~~~~a~~~~~~~~~~g~--~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~li~~~~~ 359 (838)
.. ...-..+....-.+.|- .-++.....+...|.+.|++.+|+.-|-.-. ..|...+-.|+.-+.+
T Consensus 105 ~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~-~~s~~~~a~~l~~w~~ 177 (312)
T 2wpv_A 105 LDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGT-HDSMIKYVDLLWDWLC 177 (312)
T ss_dssp CCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSC-HHHHHHHHHHHHHHHH
T ss_pred CCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CccHHHHHHHHHHHHH
Confidence 32 11222233333333332 2367788888889999999999888775222 1234444444444333
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=90.04 E-value=2.3 Score=37.23 Aligned_cols=99 Identities=12% Similarity=0.166 Sum_probs=70.6
Q ss_pred CCCCHHHHHHHHHHHHHcCCh------HHHHHHHHHHHHcCCCCChh----HHHHHH--HH-HhccCCHHHHHHHHHHHH
Q 046257 542 RKRDLVSWNSMICGYAQHGHT------KKALEVFKEMRRQDLEFDGI----TFIGVI--TA-CTHAGLVDEGQQYFDIMV 608 (838)
Q Consensus 542 ~~~~~~~~~~li~~~~~~g~~------~~A~~l~~~m~~~g~~pd~~----t~~~ll--~a-~~~~g~~~~a~~~~~~m~ 608 (838)
.+.|..+|-..+.-.-+.|++ ++.+++|++.... ++|+.. .|.-+. .| +...+++++|.++|+.++
T Consensus 9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMAR 87 (161)
T ss_dssp -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 366888999999998888999 8899999988875 677531 121111 11 123478999999999997
Q ss_pred hcCCccCCCchHHHHHHHHHhcCCHHHHHHHHhhC
Q 046257 609 NEHHIYPTMEHYSCMVDLYSRAGMLEKAMDIINRM 643 (838)
Q Consensus 609 ~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~~m 643 (838)
+. +-+- ...|-....--.|.|+++.|.+++.+.
T Consensus 88 ~~-hKkF-AKiwi~~AqFEiRqgnl~kARkILg~A 120 (161)
T 4h7y_A 88 AN-CKKF-AFVHISFAQFELSQGNVKKSKQLLQKA 120 (161)
T ss_dssp HH-CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HH-hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 54 2221 445555566677999999999999876
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=89.41 E-value=20 Score=36.32 Aligned_cols=167 Identities=10% Similarity=0.027 Sum_probs=99.3
Q ss_pred HHHHHHHHHhCCChHHHHHHHccCCCCCcchHHHHHHHHHhCCCchHHHHHH----HHHHHCCCCCChhhHHHHHHHHhc
Q 046257 116 STSLVDLYMRTNNVEDGRRVFDDMNESNVVSWTSLLSGYARNKMNDRVLELF----HRMQVEGIKPNSFTFSTVLGVLAD 191 (838)
Q Consensus 116 ~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~----~~m~~~g~~p~~~t~~~ll~~~~~ 191 (838)
+.++..-|.+.+++++|.+++-. -...+.+.|+...|-++- +-..+.++++|..+...|+..+..
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~ 106 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRL 106 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 44566778899999999997643 133455667776665554 555677888999888888888876
Q ss_pred CCChH-----HHHHHHHHHHHhC--CCCchhHHHHHHHHhHcCCChhHHHHHHhcCCCCCcchHHHHHHHHHhCCChHHH
Q 046257 192 EGIVA-----TAVQVHTMVIKNG--GEVVTSVCNALISMYLKSKMVRDARAVFDGMEDRDSITWNSMVAGYVTNELHMEA 264 (838)
Q Consensus 192 ~g~~~-----~a~~l~~~~~~~g--~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A 264 (838)
...-+ ...+...+-.+.| -.-|+.....+...|.+.+++.+|+.-|-.-..+++..+..|+..+.+.+...++
T Consensus 107 ~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e~ 186 (336)
T 3lpz_A 107 FQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHTA 186 (336)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGGH
T ss_pred CCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCccH
Confidence 65321 2223333334444 2346777888888999999999998888422222224554444333333322221
Q ss_pred HHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHH
Q 046257 265 FETFNNMGLAGAELTRSTFVSVIKLCATTKELRLARQLHSQVLK 308 (838)
Q Consensus 265 ~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 308 (838)
|.+.-..+|. |...+++..|..+++...+
T Consensus 187 --------------dlfiaRaVL~-yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 187 --------------PLYCARAVLP-YLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp --------------HHHHHHHHHH-HHHTTCHHHHHHHHHHHHH
T ss_pred --------------HHHHHHHHHH-HHHhCCHHHHHHHHHHHHH
Confidence 2222223333 3345677777776665543
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=89.14 E-value=1.5 Score=36.11 Aligned_cols=62 Identities=13% Similarity=0.081 Sum_probs=37.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcC----------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh
Q 046257 518 SSALVTMYSKKGNIESASEVFKRQR----------KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDG 581 (838)
Q Consensus 518 ~~~li~~y~k~g~~~~A~~~f~~~~----------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~ 581 (838)
+-.|...+.+.|+++.|...|+... ......+..+..+|.+.|+.++|+..+++..+ +.|+.
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~--l~P~~ 79 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE--LDPEH 79 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTC
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCCC
Confidence 3345555666666666666665432 01234566666666677777777777766666 55654
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.31 E-value=2.1 Score=38.21 Aligned_cols=112 Identities=9% Similarity=-0.007 Sum_probs=59.6
Q ss_pred HHHHHHhcCCHHHHHHHHHhcC-----CCCH-------HHHHHHHHHHHHcCChHHHHHHHHHHHHcC-CCCChh-HHHH
Q 046257 521 LVTMYSKKGNIESASEVFKRQR-----KRDL-------VSWNSMICGYAQHGHTKKALEVFKEMRRQD-LEFDGI-TFIG 586 (838)
Q Consensus 521 li~~y~k~g~~~~A~~~f~~~~-----~~~~-------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~pd~~-t~~~ 586 (838)
-+..+...|.++.|+-+.+.+. ++++ .+...+..++...|++.+|...|++.++.. .-|... +..+
T Consensus 26 qik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~ 105 (167)
T 3ffl_A 26 HVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPS 105 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---------
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 3555666777877776665433 3332 234455667777788888888887765421 112111 1111
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHhcCCHHHHHHHHhhCCCC
Q 046257 587 VITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDIINRMPFA 646 (838)
Q Consensus 587 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~ 646 (838)
+.. ...... .....++.+.---+...|.+.|+.++|+.+++.+|.+
T Consensus 106 ~~~----~ss~p~----------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 106 TGN----SASTPQ----------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp -------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred ccc----cCCCcc----------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 100 000000 0011223333334678889999999999999999743
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=85.96 E-value=15 Score=31.40 Aligned_cols=84 Identities=14% Similarity=-0.010 Sum_probs=55.5
Q ss_pred cCCChhHHHHHHhcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHH
Q 046257 226 KSKMVRDARAVFDGMEDRDSITWNSMVAGYVTNELHMEAFETFNNMGLAGAELTRSTFVSVIKLCATTKELRLARQLHSQ 305 (838)
Q Consensus 226 ~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 305 (838)
.||.+.....-+-.+.. +..-.+.-+...+..|+-++-.+++..+.. +.+|++..+..+..||.+.|+..++.+++.+
T Consensus 73 ~C~NlKrVi~C~~~~n~-~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~ 150 (172)
T 1wy6_A 73 KCQNLKSVVECGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIE 150 (172)
T ss_dssp GCSCTHHHHHHHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhhcHHHHHHHHHHhcc-hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 34444444444433332 333445567777888888888888777543 3567777777888888888888888888888
Q ss_pred HHHhCC
Q 046257 306 VLKNGI 311 (838)
Q Consensus 306 ~~~~g~ 311 (838)
.-+.|+
T Consensus 151 AC~kG~ 156 (172)
T 1wy6_A 151 ACKKGE 156 (172)
T ss_dssp HHHTTC
T ss_pred HHHhhh
Confidence 877774
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=85.84 E-value=3.6 Score=34.99 Aligned_cols=105 Identities=9% Similarity=0.039 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHhcCCccCCCchHHHHHHHHHhcCCHHH---HHHHHhhCCCCCCHHHHHHHHHHHHHhccC-C-CCchh
Q 046257 597 VDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEK---AMDIINRMPFAASATVWRTVLAACRLISLQ-P-HDSAI 671 (838)
Q Consensus 597 ~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~---A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~-P-~~~~~ 671 (838)
+....+.+...... +. |+..+--.+..+|.+..+..+ +..++++. +.-+ | ..-..
T Consensus 17 l~~~~~~y~~e~~~-~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l------------------~~~~~p~~~Rd~ 76 (126)
T 1nzn_A 17 LLKFEKKFQSEKAA-GS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEEL------------------LPKGSKEEQRDY 76 (126)
T ss_dssp HHHHHHHHHHHHHH-SC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHH------------------TTTSCHHHHHHH
T ss_pred HHHHHHHHHHHhcc-CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH------------------HhcCCcchHHHH
Confidence 34455555554422 22 667777778889999887766 88888876 2223 3 34556
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHhhCCCccCCceeEEEECCEEEEEeeCCCCCCChHHHHHHHHHHHHHHHHcCc
Q 046257 672 YVLLSNMYAATGHWQERARVRKLMNDRKVKKEAGYSWIEVKNKTYSFLAGDISHPQSNQIYSKLEELSTRLKDAGY 747 (838)
Q Consensus 672 y~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~~~~~s~i~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~~~g~ 747 (838)
.+.|+-.|.+.|++++|.+..+.+.+ .+|...+.....+.+..+|.+.|+
T Consensus 77 lY~LAvg~yklg~Y~~A~~~~~~lL~--------------------------~eP~n~QA~~Lk~~i~~~i~kdGl 126 (126)
T 1nzn_A 77 VFYLAVGNYRLKEYEKALKYVRGLLQ--------------------------TEPQNNQAKELERLIDKAMKKDGL 126 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--------------------------HCTTCHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHH--------------------------hCCCCHHHHHHHHHHHHHHHhccC
Confidence 77888899999999999999999875 245555555555556667777663
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=84.47 E-value=37 Score=34.33 Aligned_cols=112 Identities=12% Similarity=0.094 Sum_probs=71.4
Q ss_pred HHHHHHHhHcCCChhHHHHHHhcCCCCCcchHHHHHHHHHhCCChHHHHHHH----HHhhhCCCCCChhhHHHHHHHHhc
Q 046257 217 CNALISMYLKSKMVRDARAVFDGMEDRDSITWNSMVAGYVTNELHMEAFETF----NNMGLAGAELTRSTFVSVIKLCAT 292 (838)
Q Consensus 217 ~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~l~----~~m~~~g~~p~~~t~~~ll~~~~~ 292 (838)
+.++..=|.+.+++++|.+++.. -...+.+.|+...|.++- +-..+.++++|..+..-++..+..
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~ 106 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRL 106 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 34455557888888888887632 234456677776666554 444566788888887777777765
Q ss_pred cCcHH-HHHHHHHHHH----HhC--CCCChhHHHHHHHHHHcCCChHHHHHHHH
Q 046257 293 TKELR-LARQLHSQVL----KNG--IDFDHNIRTGLMVAYSKCGKMEDASKIFS 339 (838)
Q Consensus 293 ~~~~~-~a~~~~~~~~----~~g--~~~~~~~~~~Li~~y~~~g~~~~A~~~f~ 339 (838)
...-+ .=..+...++ +.| ..-|+.....+...|.+.+++.+|+.-|-
T Consensus 107 ~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i 160 (336)
T 3lpz_A 107 FQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV 160 (336)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred CCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 54311 1123333333 334 23466777788888888888888888774
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=83.70 E-value=48 Score=35.30 Aligned_cols=313 Identities=12% Similarity=0.147 Sum_probs=156.9
Q ss_pred CChHHHHHHHHHhhhC-----CCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHh-CCCCChh--HHHHHHHHHHcCCC
Q 046257 259 ELHMEAFETFNNMGLA-----GAELTRSTFVSVIKLCATTKELRLARQLHSQVLKN-GIDFDHN--IRTGLMVAYSKCGK 330 (838)
Q Consensus 259 g~~~~A~~l~~~m~~~-----g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~~~~~--~~~~Li~~y~~~g~ 330 (838)
|++++|++.+..+.+. ....+......++..|...++++...+.+..+.+. |...... ..+.++........
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~ 109 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS 109 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence 3455555555444321 23334445666666777777776665555444332 2211111 11122222222232
Q ss_pred hH--HHHHHHHhcccCCCeee---------hHHHHHHHHHcCChHHHHHHHHHhhhcCCCCCcccHHHHHhhCCCCChhH
Q 046257 331 ME--DASKIFSMMREMKDVVS---------WTAMISGHLQNGAIDLAVNFFCQMTREGVRPNGFTYSIILTAQPAVSPFQ 399 (838)
Q Consensus 331 ~~--~A~~~f~~~~~~~~~~~---------~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~ 399 (838)
.+ .-..+.+.+....+-.. ...|...|...|++.+|.+++.++..+-...+....-
T Consensus 110 ~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~k------------- 176 (445)
T 4b4t_P 110 LDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEK------------- 176 (445)
T ss_dssp THHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHH-------------
T ss_pred hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHH-------------
Confidence 22 22233333321111111 2456788889999999999999987642222222111
Q ss_pred HHHHHHHhhccCCcchhhHHHHHHHHcCCHHHHHHHHHhcCC------CC----cchHHHHHHHHHhcCCchHHHHHHHH
Q 046257 400 VHAHIIKTNYEKSFSVGTALLNAYVKKGILDEAAKVFELIDE------KD----IVAWSAMLAGYAQIGDTEGAVKIYRQ 469 (838)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~------~~----~~~~~~li~~~~~~g~~~~A~~l~~~ 469 (838)
+.++...+..|...+++..|..++..+.. ++ ...+..++..+...+++.+|-+.|.+
T Consensus 177 -------------ve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e 243 (445)
T 4b4t_P 177 -------------IQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQE 243 (445)
T ss_dssp -------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred -------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 11223467788899999999988887642 11 13466677788888999999888887
Q ss_pred hhcC-CCCCCHhhHHHHHH-----HhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhc--CCHHHHHHHHHhc
Q 046257 470 LTSE-GVKPNEFTFSSVIN-----ACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKK--GNIESASEVFKRQ 541 (838)
Q Consensus 470 m~~~-g~~p~~~t~~~ll~-----a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~--g~~~~A~~~f~~~ 541 (838)
.... ...-|...+..++. ..... ...+....++.. .+...-++...+..|+.+|... .+++.+.+.|...
T Consensus 244 ~~~~~~~~~d~~~~~~~L~~~v~~~iLa~-~~~~~~~ll~~~-~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~ 321 (445)
T 4b4t_P 244 IYQTDAIKSDEAKWKPVLSHIVYFLVLSP-YGNLQNDLIHKI-QNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEPV 321 (445)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHHSS-CSSTTHHHHHSH-HHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSS
T ss_pred HHhcccccCCHHHHHHHHHHHHHHHHhCC-CCchHHHHHHHH-hhcccccccHHHHHHHHHHHhchHhhhHHHHHHHHHH
Confidence 7542 11222222221111 11111 111112222221 1222234566777788888764 3567777777655
Q ss_pred CCCCH---------HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHHHhcC
Q 046257 542 RKRDL---------VSWNSMICGYAQHGHTKKALEVFKEMRRQDLEF-DGITFIGVITACTHAGLVDEGQQYFDIMVNEH 611 (838)
Q Consensus 542 ~~~~~---------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 611 (838)
..++. ..|+.|......|+ .. .+. +| +.+++..+.....- ..+++..+...|+.+.
T Consensus 322 L~~~~~~~~~~~~~~~~~~L~~~v~ehn-l~-------~i~----k~Ys~I~l~~la~lL~l--~~~evE~~ls~mI~~g 387 (445)
T 4b4t_P 322 LNEDDLAFGGEANKHHWEDLQKRVIEHN-LR-------VIS----EYYSRITLLRLNELLDL--TESQTETYISDLVNQG 387 (445)
T ss_dssp TTTCCSSCCCSCSSHHHHHHHHHHHHHH-HH-------HHH----HHEEEEEHHHHHHHHTS--CHHHHHHHHHHHHHHT
T ss_pred hcccchhhhcchhhHHHHHHHHHHHHHH-HH-------HHH----HHhceeeHHHHHHHhCc--CHHHHHHHHHHHHHCC
Confidence 43322 23444444333222 01 111 12 34455555544432 4678888888888665
Q ss_pred Cc
Q 046257 612 HI 613 (838)
Q Consensus 612 ~~ 613 (838)
.+
T Consensus 388 ~i 389 (445)
T 4b4t_P 388 II 389 (445)
T ss_dssp SS
T ss_pred CE
Confidence 44
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=82.19 E-value=6.1 Score=33.78 Aligned_cols=76 Identities=7% Similarity=-0.053 Sum_probs=52.5
Q ss_pred CCCChhHHHHHHHHHhccCC---HHHHHHHHHHHHhcCCccC--CCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHH
Q 046257 577 LEFDGITFIGVITACTHAGL---VDEGQQYFDIMVNEHHIYP--TMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATV 651 (838)
Q Consensus 577 ~~pd~~t~~~ll~a~~~~g~---~~~a~~~~~~m~~~~~~~p--~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~ 651 (838)
-.|+..|-..+..++.++.. +.+|..+++...+.. | ..+..--|.-++.|.|++++|.+..+.+
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~---~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~l-------- 104 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA---ESRRRECLYYLTIGCYKLGEYSMAKRYVDTL-------- 104 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC---GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHH--------
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC---cchhHHHHHHHHHHHHHhhhHHHHHHHHHHH--------
Confidence 35565555556666666654 567888888877542 3 2333444667899999999999999976
Q ss_pred HHHHHHHHHHhccCCCCchhHH
Q 046257 652 WRTVLAACRLISLQPHDSAIYV 673 (838)
Q Consensus 652 w~~ll~~c~~~~l~P~~~~~y~ 673 (838)
++.+|+|..+..
T Consensus 105 ----------L~~eP~N~QA~~ 116 (134)
T 3o48_A 105 ----------FEHERNNKQVGA 116 (134)
T ss_dssp ----------HTTCTTCHHHHH
T ss_pred ----------HhhCCCCHHHHH
Confidence 788887665443
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=81.17 E-value=11 Score=30.16 Aligned_cols=60 Identities=17% Similarity=0.197 Sum_probs=45.7
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHH
Q 046257 523 TMYSKKGNIESASEVFKRQRKRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGITFI 585 (838)
Q Consensus 523 ~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~ 585 (838)
..+...|++++|..+.+...-||+..|-+|-. .+.|..+++..-+.++..+| .|....|.
T Consensus 48 sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg-~p~~q~Fa 107 (116)
T 2p58_C 48 SSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLARSQ-DPRIQTFV 107 (116)
T ss_dssp HHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTCC-CHHHHHHH
T ss_pred HHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 34567899999999999999999999988765 46677788887777777766 45444454
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=81.00 E-value=7.1 Score=44.62 Aligned_cols=55 Identities=13% Similarity=0.097 Sum_probs=48.6
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHh
Q 046257 624 VDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMN 696 (838)
Q Consensus 624 v~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~ 696 (838)
++-|...|+++-|+++-++. .+.-|.+-.++..|+.+|...|+|+.|+-.++.+-
T Consensus 344 a~FLl~K~~~elAL~~Ak~A------------------V~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTS------------------TELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHH------------------HHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHhccCcHHHHHHHHHHH------------------HhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 45566789999999999876 67789899999999999999999999999999883
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=80.95 E-value=48 Score=33.18 Aligned_cols=162 Identities=9% Similarity=0.077 Sum_probs=83.8
Q ss_pred HHHHHcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHH----HHHhhcCCCCCCHhhHHHHHHHhcCCh---
Q 046257 421 NAYVKKGILDEAAKVFELIDEKDIVAWSAMLAGYAQIGDTEGAVKI----YRQLTSEGVKPNEFTFSSVINACTAPS--- 493 (838)
Q Consensus 421 ~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l----~~~m~~~g~~p~~~t~~~ll~a~~~~~--- 493 (838)
.=|.+.+++++|.+++..- ...+.+.|+...|-++ .+-..+.+++++..+...++.-+....
T Consensus 41 ~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~ 109 (312)
T 2wpv_A 41 NRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSE 109 (312)
T ss_dssp HHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTC
T ss_pred HHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCC
Confidence 3366666666666664322 2233444554443332 333344566666665555555443321
Q ss_pred -hhHHHHHHHHHHHHHhcC--CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHc---CChHHHHH
Q 046257 494 -AAVEQGKQFHACSIKAKL--NNALCVSSALVTMYSKKGNIESASEVFKRQRKRDLVSWNSMICGYAQH---GHTKKALE 567 (838)
Q Consensus 494 -~~~~~~~~~~~~~~~~~~--~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~---g~~~~A~~ 567 (838)
....-......+..+.|- .-|+.....+...|.+.|++.+|+.-|-.....|...+..|+.-+... |...++-
T Consensus 110 ~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e~d- 188 (312)
T 2wpv_A 110 PNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDSTVA- 188 (312)
T ss_dssp TTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHHHHH-
T ss_pred chHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcchHH-
Confidence 112222333334444432 247788889999999999999999877633322445555554444333 3333221
Q ss_pred HHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHHH
Q 046257 568 VFKEMRRQDLEFDGITFIGVITACTHAGLVDEGQQYFDIMV 608 (838)
Q Consensus 568 l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 608 (838)
...-.+++. +.-.|++..|...|+...
T Consensus 189 -------------lf~~RaVL~-yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 189 -------------EFFSRLVFN-YLFISNISFAHESKDIFL 215 (312)
T ss_dssp -------------HHHHHHHHH-HHHTTBHHHHHHHHHHHH
T ss_pred -------------HHHHHHHHH-HHHhcCHHHHHHHHHHHH
Confidence 111112222 234667777777777654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 838 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 0.001 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.7 bits (91), Expect = 0.001
Identities = 34/289 (11%), Positives = 78/289 (26%), Gaps = 24/289 (8%)
Query: 419 LLNAYVKKGILDEAAKVFELI---DEKDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGV 475
L + + G + A + + + + + + + Q + +
Sbjct: 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK--Q 62
Query: 476 KPNEF-TFSSVINACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESA 534
P +S++ N E + + ++ A + +
Sbjct: 63 NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQ 122
Query: 535 SEVFKRQRKRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGITFIGVITACTHA 594
+ V Q DL S + + + + + + + +
Sbjct: 123 AYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQ 182
Query: 595 GLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRT 654
G + +F+ V + + Y + ++ A + ++A+ R +
Sbjct: 183 GEIWLAIHHFEKAVTLDPNFL--DAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVH 240
Query: 655 VLAAC----------------RLISLQPHDSAIYVLLSNMYAATGHWQE 687
AC R I LQPH Y L+N G E
Sbjct: 241 GNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAE 289
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 838 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.81 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.81 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.3 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.2 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.69 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 98.66 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 98.63 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.58 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.58 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.58 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.55 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.45 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.42 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.36 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.35 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.3 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.21 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.17 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.14 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.12 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.09 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.05 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.03 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.99 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.99 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.94 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.89 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 97.88 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.75 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.73 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.72 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.69 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 97.67 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.61 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.57 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.56 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.54 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.39 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.38 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.3 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.29 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.27 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.1 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.09 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.06 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 96.87 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.85 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 96.8 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.65 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.52 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.49 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 96.38 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.16 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.0 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 90.14 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 87.93 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 87.15 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 86.37 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 84.98 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 83.16 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 82.67 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.81 E-value=3e-17 Score=175.45 Aligned_cols=181 Identities=14% Similarity=0.185 Sum_probs=133.5
Q ss_pred hhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 046257 494 AAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFK 570 (838)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~ 570 (838)
+..+.+...+...++.. +.+...+..+...|...|++++|...|++.. ..+...|..+...|...|++++|++.|+
T Consensus 183 ~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 261 (388)
T d1w3ba_ 183 GEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYR 261 (388)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 44444444444444332 2234455666777888888888888887654 4566777888888888888888888888
Q ss_pred HHHHcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCH
Q 046257 571 EMRRQDLEFD-GITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASA 649 (838)
Q Consensus 571 ~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~ 649 (838)
+..+ +.|+ ..++..+..++...|++++|.+.++...... +.+...+..+..++.+.|++++|.+.+++.
T Consensus 262 ~al~--~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a------ 331 (388)
T d1w3ba_ 262 RAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC--PTHADSLNNLANIKREQGNIEEAVRLYRKA------ 331 (388)
T ss_dssp HHHH--TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH------
T ss_pred HHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC--CccchhhhHHHHHHHHCCCHHHHHHHHHHH------
Confidence 8887 5665 4567778888888888888888888776432 234456777788888888888888888876
Q ss_pred HHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhh
Q 046257 650 TVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMND 697 (838)
Q Consensus 650 ~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~ 697 (838)
++++|+++.++..++.+|...|++++|.+.+++..+
T Consensus 332 ------------l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 367 (388)
T d1w3ba_ 332 ------------LEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp ------------TTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred ------------HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 677888888888888888888888888888887754
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.81 E-value=4.2e-17 Score=174.30 Aligned_cols=209 Identities=15% Similarity=0.189 Sum_probs=160.3
Q ss_pred hHHHHHHHHcCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCCh
Q 046257 417 TALLNAYVKKGILDEAAKVFELIDE---KDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPS 493 (838)
Q Consensus 417 ~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~ 493 (838)
..+...+...|.+++|...++...+ .+...|..+...|...|++++|+..|.+....
T Consensus 173 ~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------------------- 232 (388)
T d1w3ba_ 173 SNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL-------------------- 232 (388)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--------------------
T ss_pred HhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHH--------------------
Confidence 3455556666666666666654432 23445666666666666666666666555432
Q ss_pred hhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 046257 494 AAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFK 570 (838)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~ 570 (838)
. +.+...+..+...|.+.|++++|.+.|++.. +.+..+|..+...|...|+.++|++.|+
T Consensus 233 ----------------~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~ 295 (388)
T d1w3ba_ 233 ----------------S-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYN 295 (388)
T ss_dssp ----------------C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred ----------------h-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 1 1233444556677889999999999998764 4567899999999999999999999999
Q ss_pred HHHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCC-CchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCH
Q 046257 571 EMRRQDLEFDGITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPT-MEHYSCMVDLYSRAGMLEKAMDIINRMPFAASA 649 (838)
Q Consensus 571 ~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~ 649 (838)
+.... .+.+...+..+...+...|++++|.++|+...+ +.|+ ...+..+..+|.+.|++++|.+.+++.
T Consensus 296 ~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a------ 365 (388)
T d1w3ba_ 296 TALRL-CPTHADSLNNLANIKREQGNIEEAVRLYRKALE---VFPEFAAAHSNLASVLQQQGKLQEALMHYKEA------ 365 (388)
T ss_dssp HHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTT---SCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHH------
T ss_pred hhhcc-CCccchhhhHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH------
Confidence 99884 244567788888899999999999999999873 4565 456888999999999999999999987
Q ss_pred HHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCC
Q 046257 650 TVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGH 684 (838)
Q Consensus 650 ~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~ 684 (838)
++++|+++.+|..|+++|.+.|+
T Consensus 366 ------------l~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 366 ------------IRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp ------------HTTCTTCHHHHHHHHHHHHHTCC
T ss_pred ------------HHhCCCCHHHHHHHHHHHHHcCC
Confidence 89999999999999999998875
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.30 E-value=4.2e-11 Score=123.87 Aligned_cols=262 Identities=13% Similarity=0.065 Sum_probs=183.7
Q ss_pred HHHHHHHHcCChHHHHHHHHHhhhcCCCCCcccHHHHHhhCCCCChhHHHHHHHHhhccCCcchhhHHHHHHHHcCCHHH
Q 046257 352 AMISGHLQNGAIDLAVNFFCQMTREGVRPNGFTYSIILTAQPAVSPFQVHAHIIKTNYEKSFSVGTALLNAYVKKGILDE 431 (838)
Q Consensus 352 ~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~ 431 (838)
.....+.+.|++++|+..|++..+. .|+.. ..+..+...|...|++++
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~------------------------------~a~~~lg~~~~~~~~~~~ 71 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQ--DPKHM------------------------------EAWQYLGTTQAENEQELL 71 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHS--CTTCH------------------------------HHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--CCCCH------------------------------HHHHHHHHHHHHcCChHH
Confidence 3455678999999999999998874 34432 223567888999999999
Q ss_pred HHHHHHhcCC---CCcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCChhhHHHHHHHHHHHHH
Q 046257 432 AAKVFELIDE---KDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFHACSIK 508 (838)
Q Consensus 432 A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~ 508 (838)
|...|++..+ .+...|..+...|...|++++|++.+++.... .|+.............. .
T Consensus 72 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~-------------- 134 (323)
T d1fcha_ 72 AISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRY--TPAYAHLVTPAEEGAGG-A-------------- 134 (323)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--STTTGGGCC------------------------
T ss_pred HHHHHHhhhccccccccccccccccccccccccccccchhhHHHh--ccchHHHHHhhhhhhhh-c--------------
Confidence 9999987653 45678899999999999999999999998763 44432211110000000 0
Q ss_pred hcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC-----CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hh
Q 046257 509 AKLNNALCVSSALVTMYSKKGNIESASEVFKRQR-----KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD-GI 582 (838)
Q Consensus 509 ~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~ 582 (838)
+.......+..+.+.+...+|.+.|.+.. ..+...|..+...+...|++++|+..|++... ..|+ ..
T Consensus 135 -----~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~ 207 (323)
T d1fcha_ 135 -----GLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALS--VRPNDYL 207 (323)
T ss_dssp -----------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHH
T ss_pred -----ccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccc--ccccccc
Confidence 00000011122344566677777776543 23567788899999999999999999999988 4565 56
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCC-CchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHH
Q 046257 583 TFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPT-MEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRL 661 (838)
Q Consensus 583 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~ 661 (838)
++..+..++...|++++|.+.|+...+. .|+ ...|..+..+|.+.|++++|++.|++.
T Consensus 208 ~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a------------------ 266 (323)
T d1fcha_ 208 LWNKLGATLANGNQSEEAVAAYRRALEL---QPGYIRSRYNLGISCINLGAHREAVEHFLEA------------------ 266 (323)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH------------------
T ss_pred chhhhhhcccccccchhHHHHHHHHHHH---hhccHHHHHHHHHHHHHCCCHHHHHHHHHHH------------------
Confidence 7888888999999999999999998743 454 456888999999999999999999876
Q ss_pred hccCCCCchh-----------HHHHHHHHHhcCCchHHHH
Q 046257 662 ISLQPHDSAI-----------YVLLSNMYAATGHWQERAR 690 (838)
Q Consensus 662 ~~l~P~~~~~-----------y~~l~~~y~~~g~~~~a~~ 690 (838)
++++|++... +..+..++...|+++.+..
T Consensus 267 l~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~ 306 (323)
T d1fcha_ 267 LNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA 306 (323)
T ss_dssp HHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 5555555543 3446667777777765543
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.20 E-value=3.8e-10 Score=116.50 Aligned_cols=219 Identities=16% Similarity=0.108 Sum_probs=162.2
Q ss_pred HHHHHHHcCCHHHHHHHHHhcCCC---CcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCChhh
Q 046257 419 LLNAYVKKGILDEAAKVFELIDEK---DIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAA 495 (838)
Q Consensus 419 Li~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 495 (838)
....|.+.|++++|...|+.+.+. +..+|..+...|...|++++|+..|.+..+. .|+.
T Consensus 25 ~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~---------------- 86 (323)
T d1fcha_ 25 EGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLEL--KPDN---------------- 86 (323)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTC----------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcc--cccc----------------
Confidence 445577888888888888876542 4557777888888888888888888777652 3332
Q ss_pred HHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCC----------------HHHHHHHHHHHH
Q 046257 496 VEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQR--KRD----------------LVSWNSMICGYA 557 (838)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~--~~~----------------~~~~~~li~~~~ 557 (838)
...+..+...|.+.|++++|.+.++... .|+ .......+..+.
T Consensus 87 -------------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (323)
T d1fcha_ 87 -------------------QTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL 147 (323)
T ss_dssp -------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH
T ss_pred -------------------ccccccccccccccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHH
Confidence 2233344555667777777777766543 111 111112233445
Q ss_pred HcCChHHHHHHHHHHHHcCCCCC---hhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCC-CchHHHHHHHHHhcCCH
Q 046257 558 QHGHTKKALEVFKEMRRQDLEFD---GITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPT-MEHYSCMVDLYSRAGML 633 (838)
Q Consensus 558 ~~g~~~~A~~l~~~m~~~g~~pd---~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~G~~ 633 (838)
..+...+|.+.|++..+. .|+ ...+..+...+...|++++|..+|+..... .|+ ...|..+...|.+.|++
T Consensus 148 ~~~~~~~a~~~~~~al~~--~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~ 222 (323)
T d1fcha_ 148 SDSLFLEVKELFLAAVRL--DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV---RPNDYLLWNKLGATLANGNQS 222 (323)
T ss_dssp HHHHHHHHHHHHHHHHHH--STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCH
T ss_pred HhhHHHHHHHHHHHHHHH--hhcccccccchhhHHHHHHHHHHhhhhccccccccc---ccccccchhhhhhcccccccc
Confidence 567788999999998873 444 456778888899999999999999998743 354 56788899999999999
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhh
Q 046257 634 EKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMND 697 (838)
Q Consensus 634 ~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~ 697 (838)
++|.+.+++. ++++|+++.+|..|+.+|...|++++|.+.+++..+
T Consensus 223 ~~A~~~~~~a------------------l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 223 EEAVAAYRRA------------------LELQPGYIRSRYNLGISCINLGAHREAVEHFLEALN 268 (323)
T ss_dssp HHHHHHHHHH------------------HHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHH------------------HHHhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999987 788999999999999999999999999999998765
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.69 E-value=1.1e-07 Score=96.84 Aligned_cols=191 Identities=13% Similarity=0.128 Sum_probs=144.5
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 046257 446 AWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMY 525 (838)
Q Consensus 446 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y 525 (838)
.|+.+-..+.+.+.+++|+++++++.+ +.|+..+. |+.....+
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~--lnP~~~~a-----------------------------------~~~r~~~l 87 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIE--LNAANYTV-----------------------------------WHFRRVLL 87 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHH--HCTTCHHH-----------------------------------HHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHH--HCCCChHH-----------------------------------HHHHHHHH
Confidence 466677778889999999999999987 45665443 22233344
Q ss_pred HhcC-CHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccCCHHHH
Q 046257 526 SKKG-NIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITACTHAGLVDEG 600 (838)
Q Consensus 526 ~k~g-~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a 600 (838)
.+.| ++++|.+.++... +.+..+|+.+...+...|++++|++.|+++.+ +.|+ ...|..+...+.+.|++++|
T Consensus 88 ~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~--~dp~n~~a~~~~~~~~~~~~~~~~A 165 (315)
T d2h6fa1 88 KSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILN--QDAKNYHAWQHRQWVIQEFKLWDNE 165 (315)
T ss_dssp HHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCTTH
T ss_pred HHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhh--hhhcchHHHHHHHHHHHHHHhhHHH
Confidence 5555 5888888888764 56788999999999999999999999999998 5665 56788888899999999999
Q ss_pred HHHHHHHHhcCCccCC-CchHHHHHHHHHhcCC------HHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHH
Q 046257 601 QQYFDIMVNEHHIYPT-MEHYSCMVDLYSRAGM------LEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYV 673 (838)
Q Consensus 601 ~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~G~------~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~ 673 (838)
.+.++.+++ +.|+ ...|+.+..++.+.|. +++|.+.+.++ ++++|++...+.
T Consensus 166 l~~~~~al~---~~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~a------------------l~~~P~~~~~~~ 224 (315)
T d2h6fa1 166 LQYVDQLLK---EDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEM------------------IKLVPHNESAWN 224 (315)
T ss_dssp HHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHH------------------HHHSTTCHHHHH
T ss_pred HHHHHHHHH---HCCccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHH------------------HHhCCCchHHHH
Confidence 999999884 3453 4456666666766665 56777777765 788999999999
Q ss_pred HHHHHHHhcCCchHHHHHHHHHhh
Q 046257 674 LLSNMYAATGHWQERARVRKLMND 697 (838)
Q Consensus 674 ~l~~~y~~~g~~~~a~~~~~~m~~ 697 (838)
.++.+|...| .+++...++...+
T Consensus 225 ~l~~ll~~~~-~~~~~~~~~~~~~ 247 (315)
T d2h6fa1 225 YLKGILQDRG-LSKYPNLLNQLLD 247 (315)
T ss_dssp HHHHHHTTTC-GGGCHHHHHHHHH
T ss_pred HHHHHHHhcC-hHHHHHHHHHHHH
Confidence 8888877655 4666676666654
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=98.66 E-value=8e-07 Score=91.57 Aligned_cols=266 Identities=12% Similarity=0.064 Sum_probs=182.4
Q ss_pred HHHHHHHcCCHHHHHHHHHhcCC--CC------cchHHHHHHHHHhcCCchHHHHHHHHhhcCCC-CCCH----hhHHHH
Q 046257 419 LLNAYVKKGILDEAAKVFELIDE--KD------IVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGV-KPNE----FTFSSV 485 (838)
Q Consensus 419 Li~~y~~~g~~~~A~~~f~~~~~--~~------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~----~t~~~l 485 (838)
....+...|++++|.+.+++..+ |+ ...++.+...|...|++++|+..|++...... .++. .++..+
T Consensus 18 rA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 97 (366)
T d1hz4a_ 18 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 97 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 35567789999999999987542 21 23677788899999999999999998765211 1222 222333
Q ss_pred HHHhcCChhhHHHHHHHHHHHHH----hcCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHhcC----C----CCHHHHH
Q 046257 486 INACTAPSAAVEQGKQFHACSIK----AKLNNA---LCVSSALVTMYSKKGNIESASEVFKRQR----K----RDLVSWN 550 (838)
Q Consensus 486 l~a~~~~~~~~~~~~~~~~~~~~----~~~~~~---~~~~~~li~~y~k~g~~~~A~~~f~~~~----~----~~~~~~~ 550 (838)
...+... +.+..+...+..... ...... ...+..+...|...|+++.|...+.... . ....++.
T Consensus 98 ~~~~~~~-~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 176 (366)
T d1hz4a_ 98 SEILFAQ-GFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA 176 (366)
T ss_dssp HHHHHHT-TCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHH
Confidence 3334444 677777776665543 222222 2345567788999999999999887654 1 1235566
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCC--C--CC--hhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCC--CchHHH
Q 046257 551 SMICGYAQHGHTKKALEVFKEMRRQDL--E--FD--GITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPT--MEHYSC 622 (838)
Q Consensus 551 ~li~~~~~~g~~~~A~~l~~~m~~~g~--~--pd--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~y~~ 622 (838)
.+...+...|+..++...+.+.....- . +. ...+..+...+...|+.++|..+++.......-.+. ...+..
T Consensus 177 ~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 256 (366)
T d1hz4a_ 177 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN 256 (366)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 677788899999999999887765311 1 11 123555666778899999999999877532211111 123456
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhh
Q 046257 623 MVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMND 697 (838)
Q Consensus 623 lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~ 697 (838)
+...+...|++++|.+.+++. +...+..+..|....++..++.+|...|++++|.+.+++..+
T Consensus 257 la~~~~~~g~~~~A~~~~~~a------------l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 257 IARAQILLGEFEPAEIVLEEL------------NENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHH------------HHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 788999999999999999875 111222455666778899999999999999999999987643
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=98.63 E-value=3.1e-06 Score=86.92 Aligned_cols=288 Identities=12% Similarity=-0.033 Sum_probs=169.4
Q ss_pred ccCcHHHHHHHHHHHHHhCCCCC----hhHHHHHHHHHHcCCChHHHHHHHHhccc----CCC----eeehHHHHHHHHH
Q 046257 292 TTKELRLARQLHSQVLKNGIDFD----HNIRTGLMVAYSKCGKMEDASKIFSMMRE----MKD----VVSWTAMISGHLQ 359 (838)
Q Consensus 292 ~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~Li~~y~~~g~~~~A~~~f~~~~~----~~~----~~~~~~li~~~~~ 359 (838)
..|++++|.++++..++.....+ ...++.+...|...|++++|...|++... .++ ...+..+...+..
T Consensus 24 ~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (366)
T d1hz4a_ 24 NDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFA 103 (366)
T ss_dssp HTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHH
Confidence 44444555544444444321111 12344455566666666666666665432 111 1234555667777
Q ss_pred cCChHHHHHHHHHhhhcC---CCCCcccHHHHHhhCCCCChhHHHHHHHHhhccCCcchhhHHHHHHHHcCCHHHHHHHH
Q 046257 360 NGAIDLAVNFFCQMTREG---VRPNGFTYSIILTAQPAVSPFQVHAHIIKTNYEKSFSVGTALLNAYVKKGILDEAAKVF 436 (838)
Q Consensus 360 ~g~~~~A~~l~~~m~~~g---~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~f 436 (838)
.|++..+...+.+..... ..+..... ......+...|...|+++.|...+
T Consensus 104 ~~~~~~a~~~~~~al~~~~~~~~~~~~~~---------------------------~~~~~~la~~~~~~~~~~~a~~~~ 156 (366)
T d1hz4a_ 104 QGFLQTAWETQEKAFQLINEQHLEQLPMH---------------------------EFLVRIRAQLLWAWARLDEAEASA 156 (366)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCTTSTHH---------------------------HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHhcccchhhHH---------------------------HHHHHHHHHHHHHhcchhhhHHHH
Confidence 888888888887765421 11111111 011234566788889999988888
Q ss_pred HhcCCC--------CcchHHHHHHHHHhcCCchHHHHHHHHhhcC--CCCCCHhhHHHHHHHhcCChhhHHHHHHHHHHH
Q 046257 437 ELIDEK--------DIVAWSAMLAGYAQIGDTEGAVKIYRQLTSE--GVKPNEFTFSSVINACTAPSAAVEQGKQFHACS 506 (838)
Q Consensus 437 ~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~ 506 (838)
...... ....+..+...+...++..++...+.+.... ........
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~------------------------- 211 (366)
T d1hz4a_ 157 RSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDW------------------------- 211 (366)
T ss_dssp HHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHH-------------------------
T ss_pred HHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCch-------------------------
Confidence 765421 1234455556666777777777776654331 00111110
Q ss_pred HHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-------CHHHHHHHHHHHHHcCChHHHHHHHHHHHH----c
Q 046257 507 IKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQRKR-------DLVSWNSMICGYAQHGHTKKALEVFKEMRR----Q 575 (838)
Q Consensus 507 ~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~-------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~ 575 (838)
....+..+...+...|+.++|...++..... ....+..+...|...|++++|.+.+++... .
T Consensus 212 -------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 284 (366)
T d1hz4a_ 212 -------ISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSL 284 (366)
T ss_dssp -------HHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred -------HHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhc
Confidence 1122344556688899999999999876521 234567788899999999999999998764 3
Q ss_pred CCCCCh-hHHHHHHHHHhccCCHHHHHHHHHHHHhc---CCccC----CCchHHHHHHHHHhcCCHHHHHH
Q 046257 576 DLEFDG-ITFIGVITACTHAGLVDEGQQYFDIMVNE---HHIYP----TMEHYSCMVDLYSRAGMLEKAMD 638 (838)
Q Consensus 576 g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~---~~~~p----~~~~y~~lv~~l~r~G~~~~A~~ 638 (838)
+..|+. .++..+..++...|++++|.+.++...+. .|... ....+..++..+...|++++++.
T Consensus 285 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~ 355 (366)
T d1hz4a_ 285 RLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQ 355 (366)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHH
T ss_pred ccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHH
Confidence 455553 46777788899999999999999876532 11110 11223445556667777776654
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.58 E-value=2.1e-07 Score=91.71 Aligned_cols=177 Identities=15% Similarity=0.055 Sum_probs=118.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHh
Q 046257 517 VSSALVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITACT 592 (838)
Q Consensus 517 ~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~ 592 (838)
++..+...|.+.|++++|.+.|++.. +.+..+|+.+..+|...|++++|++.|++..+ +.|+ ..++..+..++.
T Consensus 39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~ 116 (259)
T d1xnfa_ 39 LLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAHLNRGIALY 116 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHH--HHhhhhhhHHHHHHHHH
Confidence 34445667888888888888888765 45778888888888888888888888888888 5665 456777888888
Q ss_pred ccCCHHHHHHHHHHHHhcCCccCC-CchHHHHHHHHHhcCCHHHHHHHHhhCC-CCCCHHHHHHHHHHH-----------
Q 046257 593 HAGLVDEGQQYFDIMVNEHHIYPT-MEHYSCMVDLYSRAGMLEKAMDIINRMP-FAASATVWRTVLAAC----------- 659 (838)
Q Consensus 593 ~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~G~~~~A~~~~~~m~-~~~~~~~w~~ll~~c----------- 659 (838)
..|++++|...|+...+. .|+ ......+...+.+.+..+.+..+..... ..++...|..+....
T Consensus 117 ~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (259)
T d1xnfa_ 117 YGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMER 193 (259)
T ss_dssp HTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHhh---ccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhhhhHHHHHHHHHHHHHHHHH
Confidence 888888888888887743 343 2233333344445554444433332221 112222222111100
Q ss_pred -H-----HhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 046257 660 -R-----LISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMNDR 698 (838)
Q Consensus 660 -~-----~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~~ 698 (838)
. .....|....+|..|+.+|...|++++|.+.+++....
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 238 (259)
T d1xnfa_ 194 LKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 238 (259)
T ss_dssp HHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 0 33455767778999999999999999999999988753
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.58 E-value=9e-07 Score=89.88 Aligned_cols=208 Identities=9% Similarity=0.047 Sum_probs=140.0
Q ss_pred hHHHHHHHHHcCChHHHHHHHHHhhhcCCCCCcccHHHHHhhCCCCChhHHHHHHHHhhccCCcchhhHHHHHHHHcC-C
Q 046257 350 WTAMISGHLQNGAIDLAVNFFCQMTREGVRPNGFTYSIILTAQPAVSPFQVHAHIIKTNYEKSFSVGTALLNAYVKKG-I 428 (838)
Q Consensus 350 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~y~~~g-~ 428 (838)
++.+-..+.+.+.+++|+++++++++ +.|+..+. |+.....+.+.| +
T Consensus 46 ~~~~~~~~~~~e~~~~Al~~~~~ai~--lnP~~~~a------------------------------~~~r~~~l~~l~~~ 93 (315)
T d2h6fa1 46 YDYFRAVLQRDERSERAFKLTRDAIE--LNAANYTV------------------------------WHFRRVLLKSLQKD 93 (315)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHH--HCTTCHHH------------------------------HHHHHHHHHHTTCC
T ss_pred HHHHHHHHHhCCchHHHHHHHHHHHH--HCCCChHH------------------------------HHHHHHHHHHhCcC
Confidence 44555566677777888888877776 34554433 244555555655 4
Q ss_pred HHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCChhhHHHHHHHHHH
Q 046257 429 LDEAAKVFELIDE---KDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFHAC 505 (838)
Q Consensus 429 ~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~ 505 (838)
+++|...++...+ .+..+|+.+...+.+.|++++|++.|+++.+. .|+
T Consensus 94 ~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~--dp~--------------------------- 144 (315)
T d2h6fa1 94 LHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQ--DAK--------------------------- 144 (315)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTT---------------------------
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhh--hhc---------------------------
Confidence 7788877776543 46678888888888899999999998888762 232
Q ss_pred HHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCC------hHHHHHHHHHHHHcC
Q 046257 506 SIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGH------TKKALEVFKEMRRQD 576 (838)
Q Consensus 506 ~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~------~~~A~~l~~~m~~~g 576 (838)
+...++.+...|.+.|++++|.+.|+++. +.+...|+.+...+...|. .++|++.+.+.++
T Consensus 145 --------n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~-- 214 (315)
T d2h6fa1 145 --------NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIK-- 214 (315)
T ss_dssp --------CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHH--
T ss_pred --------chHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHH--
Confidence 23344555666778888899998888776 4577888888777766655 5789999999988
Q ss_pred CCCC-hhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHh
Q 046257 577 LEFD-GITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSR 629 (838)
Q Consensus 577 ~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r 629 (838)
+.|+ ...|..+...+.+.| .+++.+.++...+......+...+..+++.|..
T Consensus 215 ~~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~ 267 (315)
T d2h6fa1 215 LVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYED 267 (315)
T ss_dssp HSTTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHH
T ss_pred hCCCchHHHHHHHHHHHhcC-hHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHH
Confidence 5675 456666666666554 577888887776322111123345666777654
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.58 E-value=1.5e-06 Score=88.11 Aligned_cols=182 Identities=10% Similarity=0.074 Sum_probs=139.1
Q ss_pred hhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCC-HHHHHHHHHHHHHcCChHHHHHHH
Q 046257 494 AAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQR---KRD-LVSWNSMICGYAQHGHTKKALEVF 569 (838)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~-~~~~~~li~~~~~~g~~~~A~~l~ 569 (838)
+..+.+..++...++...+.+..++..++..+.+.|+++.|..+|+++. +.+ ...|...+..+.+.|+.++|.++|
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~ 157 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence 4556677777777766556677788888899999999999999999874 223 357999999999999999999999
Q ss_pred HHHHHcCCCCC-hhHHHHHHHH-HhccCCHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHhcCCHHHHHHHHhhCCCCC
Q 046257 570 KEMRRQDLEFD-GITFIGVITA-CTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDIINRMPFAA 647 (838)
Q Consensus 570 ~~m~~~g~~pd-~~t~~~ll~a-~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~ 647 (838)
+++++. .|+ ...|...... +...|+.+.|..+|+.+.+.+ +.+...+..+++.+.+.|++++|+.+|++.
T Consensus 158 ~~al~~--~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~--p~~~~~w~~y~~~~~~~g~~~~aR~~fe~a---- 229 (308)
T d2onda1 158 KKARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERV---- 229 (308)
T ss_dssp HHHHTS--TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHH----
T ss_pred HHHHHh--CCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh--hhhHHHHHHHHHHHHHcCChHHHHHHHHHH----
Confidence 999884 443 3344433332 344689999999999998643 234567889999999999999999999986
Q ss_pred CHHHHHHHHHHHHHhccCCCCc----hhHHHHHHHHHhcCCchHHHHHHHHHhh
Q 046257 648 SATVWRTVLAACRLISLQPHDS----AIYVLLSNMYAATGHWQERARVRKLMND 697 (838)
Q Consensus 648 ~~~~w~~ll~~c~~~~l~P~~~----~~y~~l~~~y~~~g~~~~a~~~~~~m~~ 697 (838)
+...|.++ ..|......-...|+.+.+.++.+.+.+
T Consensus 230 --------------i~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 230 --------------LTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp --------------HHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred --------------HHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33333332 3566666667788999999999998865
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.55 E-value=1.2e-06 Score=88.65 Aligned_cols=209 Identities=13% Similarity=0.139 Sum_probs=141.0
Q ss_pred CchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 046257 459 DTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVF 538 (838)
Q Consensus 459 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f 538 (838)
..++|..+|++..+...+-+...+.......... +..+.++.++..+++........++..++..+.+.|+++.|+++|
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~-~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~ 157 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESR-MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence 3467777887776543333334444444444444 778888888888776554444557788888888999999999999
Q ss_pred HhcC---CCCHHHHHHHHHH-HHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCc
Q 046257 539 KRQR---KRDLVSWNSMICG-YAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITACTHAGLVDEGQQYFDIMVNEHHI 613 (838)
Q Consensus 539 ~~~~---~~~~~~~~~li~~-~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~ 613 (838)
++.. +.+...|...... +...|+.+.|..+|+++++. .|+ ...+...+..+...|++++|+.+|++.++..+.
T Consensus 158 ~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~--~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~ 235 (308)
T d2onda1 158 KKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 235 (308)
T ss_dssp HHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence 8875 2233444443332 33458889999999999884 455 567888888888999999999999998866555
Q ss_pred cCCC--chHHHHHHHHHhcCCHHHHHHHHhhC----CCCCCHHHHHHHHHHHHHhccCCCCch
Q 046257 614 YPTM--EHYSCMVDLYSRAGMLEKAMDIINRM----PFAASATVWRTVLAACRLISLQPHDSA 670 (838)
Q Consensus 614 ~p~~--~~y~~lv~~l~r~G~~~~A~~~~~~m----~~~~~~~~w~~ll~~c~~~~l~P~~~~ 670 (838)
.|.. ..|...+..-.+.|+++.+.++.+++ |-.+....+..++.-.+.+.+.|.++.
T Consensus 236 ~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~ry~~~d~~~~~~~ 298 (308)
T d2onda1 236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEGKETALLVDRYKFMDLYPCSAS 298 (308)
T ss_dssp CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTSSCHHHHHHTTTCBTTBCSSCHH
T ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCccccccchHHHHHHHHHhcccCcCCHH
Confidence 5542 36777787778889999999988875 333333333334433334556664443
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.45 E-value=2.2e-06 Score=79.79 Aligned_cols=119 Identities=10% Similarity=0.057 Sum_probs=99.9
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccCCHHHHH
Q 046257 523 TMYSKKGNIESASEVFKRQRKRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITACTHAGLVDEGQ 601 (838)
Q Consensus 523 ~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~ 601 (838)
..+...|+++.|.+.|.++.+++..+|..+...|...|++++|++.|++.++ +.|+ ...|..+..++.+.|++++|.
T Consensus 13 ~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~--ldp~~~~a~~~~g~~~~~~g~~~~A~ 90 (192)
T d1hh8a_ 13 VLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSIN--RDKHLAVAYFQRGMLYYQTEKYDLAI 90 (192)
T ss_dssp HHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHH--HhhhhhhhHHHHHHHHHhhccHHHHH
Confidence 3467889999999999999999999999999999999999999999999999 6676 567888999999999999999
Q ss_pred HHHHHHHhcCCccC-----------C---CchHHHHHHHHHhcCCHHHHHHHHhhC
Q 046257 602 QYFDIMVNEHHIYP-----------T---MEHYSCMVDLYSRAGMLEKAMDIINRM 643 (838)
Q Consensus 602 ~~~~~m~~~~~~~p-----------~---~~~y~~lv~~l~r~G~~~~A~~~~~~m 643 (838)
..|+.......-.+ . .+.+..+..++.+.|++++|.+.++..
T Consensus 91 ~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A 146 (192)
T d1hh8a_ 91 KDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA 146 (192)
T ss_dssp HHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99998864211000 0 134556788899999999999999876
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.42 E-value=4.8e-08 Score=100.81 Aligned_cols=232 Identities=6% Similarity=-0.037 Sum_probs=158.1
Q ss_pred HHHcCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCC--chHHHHHHHHhhcCCCCCCHhhHHHHH-HHhcCChhhH
Q 046257 423 YVKKGILDEAAKVFELIDE---KDIVAWSAMLAGYAQIGD--TEGAVKIYRQLTSEGVKPNEFTFSSVI-NACTAPSAAV 496 (838)
Q Consensus 423 y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p~~~t~~~ll-~a~~~~~~~~ 496 (838)
+...|.+++|...|+...+ ++...|..+..++...++ .++|+..+.++.+.. .++...+...+ ...... +..
T Consensus 83 ~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~-~~~ 160 (334)
T d1dcea1 83 EESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAA-VAP 160 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTC-CCH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhc-ccc
Confidence 3455667788888887653 356677777777777654 678999988887642 22333333333 233334 667
Q ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 046257 497 EQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQRKRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQD 576 (838)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 576 (838)
+.+...+..+++.. +.+...++.+...|.+.|++++|...+.....-.... ......+...+..+++...+......
T Consensus 161 ~~Al~~~~~~i~~~-p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~a~~~~~~~l~~- 237 (334)
T d1dcea1 161 AEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKE-LELVQNAFFTDPNDQSAWFYHRWLLG- 237 (334)
T ss_dssp HHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHH-HHHHHHHHHHCSSCSHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHH-HHHHHHHHHhcchhHHHHHHHHHHHh-
Confidence 77777776666654 3456677777888888888877765554433211111 12333445567777888888888774
Q ss_pred CCCC-hhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccC-CCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHH
Q 046257 577 LEFD-GITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYP-TMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRT 654 (838)
Q Consensus 577 ~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ 654 (838)
.|+ ..++..+...+...|+.++|...+....+ ..| +...+..+..+|.+.|++++|.+.+++.
T Consensus 238 -~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~a----------- 302 (334)
T d1dcea1 238 -RAEPLFRCELSVEKSTVLQSELESCKELQELEP---ENKWCLLTIILLMRALDPLLYEKETLQYFSTL----------- 302 (334)
T ss_dssp -CCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHH-----------
T ss_pred -CcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHh---hCchHHHHHHHHHHHHHHCCCHHHHHHHHHHH-----------
Confidence 444 44566666777788899999999987763 234 4466788889999999999999999987
Q ss_pred HHHHHHHhccCCCCchhHHHHHHHHHh
Q 046257 655 VLAACRLISLQPHDSAIYVLLSNMYAA 681 (838)
Q Consensus 655 ll~~c~~~~l~P~~~~~y~~l~~~y~~ 681 (838)
++++|.+...|..|+..+..
T Consensus 303 -------i~ldP~~~~y~~~L~~~~~~ 322 (334)
T d1dcea1 303 -------KAVDPMRAAYLDDLRSKFLL 322 (334)
T ss_dssp -------HHHCGGGHHHHHHHHHHHHH
T ss_pred -------HHHCcccHHHHHHHHHHHhH
Confidence 88999888888888777664
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.36 E-value=2.8e-07 Score=94.85 Aligned_cols=252 Identities=7% Similarity=-0.020 Sum_probs=174.8
Q ss_pred HHHHHHHcCCHHHHHHHHHhcCC--CC-cchHHHHHHHH----------HhcCCchHHHHHHHHhhcCCCCCCH-hhHHH
Q 046257 419 LLNAYVKKGILDEAAKVFELIDE--KD-IVAWSAMLAGY----------AQIGDTEGAVKIYRQLTSEGVKPNE-FTFSS 484 (838)
Q Consensus 419 Li~~y~~~g~~~~A~~~f~~~~~--~~-~~~~~~li~~~----------~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ 484 (838)
++....+.+..++|.++++.+.+ |+ ...|+..-..+ ...|.+++|+..+++..+. .|+. ..+..
T Consensus 35 ~~~~~~~~~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~--~pk~~~~~~~ 112 (334)
T d1dcea1 35 VFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHH 112 (334)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred HHHHHhcccccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHh--CCCcHHHHHH
Confidence 33334444445899999997764 32 33455433322 2334578899999998764 4544 34444
Q ss_pred HHHHhcCC-hhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcC
Q 046257 485 VINACTAP-SAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHG 560 (838)
Q Consensus 485 ll~a~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g 560 (838)
...+.... .++.+.+...+..++.............+...+...|..++|...++... +.+...|+.+...+...|
T Consensus 113 ~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~ 192 (334)
T d1dcea1 113 RCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLH 192 (334)
T ss_dssp HHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHS
T ss_pred hhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence 33333333 14577888888888776544333333445567788899999999999877 446788999999999999
Q ss_pred ChHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHhcCCHHHHHHHH
Q 046257 561 HTKKALEVFKEMRRQDLEFDGITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDII 640 (838)
Q Consensus 561 ~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~ 640 (838)
++++|...+++..+ +.|+.. .+...+...+..+++...+....... .++...+..++..+...|+.++|.+.+
T Consensus 193 ~~~~A~~~~~~~~~--~~~~~~---~~~~~~~~l~~~~~a~~~~~~~l~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~ 265 (334)
T d1dcea1 193 PQPDSGPQGRLPEN--VLLKEL---ELVQNAFFTDPNDQSAWFYHRWLLGR--AEPLFRCELSVEKSTVLQSELESCKEL 265 (334)
T ss_dssp CCCCSSSCCSSCHH--HHHHHH---HHHHHHHHHCSSCSHHHHHHHHHHSC--CCCSSSCCCCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhHH--hHHHHH---HHHHHHHHhcchhHHHHHHHHHHHhC--cchhhHHHHHHHHHHHHhhHHHHHHHH
Confidence 99888777766555 333332 23333455677778888887776332 234555666778888889999999998
Q ss_pred hhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhh
Q 046257 641 NRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMND 697 (838)
Q Consensus 641 ~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~ 697 (838)
.+. ++.+|++..++..++++|...|++++|.+.+++..+
T Consensus 266 ~~~------------------~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ 304 (334)
T d1dcea1 266 QEL------------------EPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA 304 (334)
T ss_dssp HHH------------------CTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHH
T ss_pred HHH------------------HhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 876 567888899999999999999999999999999876
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.35 E-value=3.7e-06 Score=82.39 Aligned_cols=184 Identities=9% Similarity=-0.022 Sum_probs=116.7
Q ss_pred hHHHHHHHHcCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCCh
Q 046257 417 TALLNAYVKKGILDEAAKVFELIDE---KDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPS 493 (838)
Q Consensus 417 ~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~ 493 (838)
..+...|.+.|++++|...|+...+ .+..+|+.+...|.+.|++++|++.|++..+. .|+.
T Consensus 41 ~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~-------------- 104 (259)
T d1xnfa_ 41 YERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTY-------------- 104 (259)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTC--------------
T ss_pred HHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHH--Hhhh--------------
Confidence 3566778888999999888886653 46678888888888888888888888888762 3432
Q ss_pred hhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 046257 494 AAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFK 570 (838)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~ 570 (838)
...+..+..+|...|++++|.+.|+... +.+...+..+..++.+.+..+.+..+..
T Consensus 105 ---------------------~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (259)
T d1xnfa_ 105 ---------------------NYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQ 163 (259)
T ss_dssp ---------------------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred ---------------------hhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 2233445566888899999999988765 3345555445556666666666666666
Q ss_pred HHHHcCCCCChhHHHHHHHHHhc----cCCHHHHHHHHHHHHhcCCccCC-CchHHHHHHHHHhcCCHHHHHHHHhhC
Q 046257 571 EMRRQDLEFDGITFIGVITACTH----AGLVDEGQQYFDIMVNEHHIYPT-MEHYSCMVDLYSRAGMLEKAMDIINRM 643 (838)
Q Consensus 571 ~m~~~g~~pd~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~G~~~~A~~~~~~m 643 (838)
.... ..++...+. ++..+.. .+..+.+...+.... ...|+ ...|..+...|...|++++|.+.+++.
T Consensus 164 ~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 235 (259)
T d1xnfa_ 164 HFEK--SDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNT---SLAEHLSETNFYLGKYYLSLGDLDSATALFKLA 235 (259)
T ss_dssp HHHH--SCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHH---HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred Hhhc--cchhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhh---hcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 6655 233332222 2222211 112222222222111 11222 235666888999999999999999986
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.30 E-value=3.8e-06 Score=70.88 Aligned_cols=107 Identities=15% Similarity=0.054 Sum_probs=86.8
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHhc
Q 046257 552 MICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRA 630 (838)
Q Consensus 552 li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~ 630 (838)
-...+.+.|++++|+..|++.++ ..|+ ...|..+..++...|++++|...++..++.. +.+...|..+..+|.+.
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~g~~~~~~ 84 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIK--LDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK--PDWGKGYSRKAAALEFL 84 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh--cCCcchhhhhcccccccccccccccchhhhhHHHhc--cchhhHHHHHHHHHHHc
Confidence 45677888999999999999988 4565 5668888888889999999999999888432 23556788888999999
Q ss_pred CCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHH
Q 046257 631 GMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYA 680 (838)
Q Consensus 631 G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~ 680 (838)
|++++|+..+++. ++++|+++.++..+.++-+
T Consensus 85 ~~~~~A~~~~~~a------------------~~~~p~~~~~~~~l~~l~~ 116 (117)
T d1elwa_ 85 NRFEEAKRTYEEG------------------LKHEANNPQLKEGLQNMEA 116 (117)
T ss_dssp TCHHHHHHHHHHH------------------HTTCTTCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHH------------------HHhCCCCHHHHHHHHHHhC
Confidence 9999999999987 7888988888888777644
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.21 E-value=5.5e-06 Score=69.87 Aligned_cols=91 Identities=16% Similarity=0.161 Sum_probs=81.7
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhcCCccC-CCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccC
Q 046257 587 VITACTHAGLVDEGQQYFDIMVNEHHIYP-TMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQ 665 (838)
Q Consensus 587 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~ 665 (838)
-...+...|++++|..+|+..++. .| +...|..+..+|.+.|++++|++.+++. ++++
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a------------------l~~~ 67 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKL---DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKT------------------VDLK 67 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH------------------HHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhc---CCcchhhhhcccccccccccccccchhhhhH------------------HHhc
Confidence 456778899999999999999854 45 4567899999999999999999999987 8999
Q ss_pred CCCchhHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 046257 666 PHDSAIYVLLSNMYAATGHWQERARVRKLMNDR 698 (838)
Q Consensus 666 P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~~ 698 (838)
|+++.+|..++.+|...|++++|...+++..+.
T Consensus 68 p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~ 100 (117)
T d1elwa_ 68 PDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKH 100 (117)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cchhhHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999998763
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.17 E-value=7e-06 Score=73.64 Aligned_cols=119 Identities=9% Similarity=0.068 Sum_probs=94.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCC-CchHHHHHHHH
Q 046257 550 NSMICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPT-MEHYSCMVDLY 627 (838)
Q Consensus 550 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l 627 (838)
......|.+.|++++|+..|++.++ +.|+ ...|..+..++...|++++|.+.|+..++. .|+ ...|..++.+|
T Consensus 14 ~~~gn~~~~~~~y~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~---~p~~~~a~~~~g~~~ 88 (159)
T d1a17a_ 14 KTQANDYFKAKDYENAIKFYSQAIE--LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL---DKKYIKGYYRRAASN 88 (159)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHhhhccc--cchhhhhhhhhhHHHHHhccccchHHHHHHHHHHH---cccchHHHHHHHHHH
Confidence 3456778899999999999999999 5676 467888888999999999999999998843 454 46788889999
Q ss_pred HhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHH--hcCCchHHHHH
Q 046257 628 SRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYA--ATGHWQERARV 691 (838)
Q Consensus 628 ~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~--~~g~~~~a~~~ 691 (838)
...|++++|.+.+++. ++++|+++..+..+..+.. ..+.+++|...
T Consensus 89 ~~~g~~~eA~~~~~~a------------------~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 89 MALGKFRAALRDYETV------------------VKVKPHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp HHTTCHHHHHHHHHHH------------------HHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHH------------------HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999987 7888999988887766643 33446555543
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.14 E-value=3.7e-06 Score=78.80 Aligned_cols=95 Identities=3% Similarity=-0.100 Sum_probs=65.7
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCC-CchHH
Q 046257 544 RDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPT-MEHYS 621 (838)
Q Consensus 544 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~ 621 (838)
|+...+......|.+.|++++|+..|++.++ +.|+ ...|..+..++...|++++|...|+..+ .+.|+ ...|.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~--~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al---~l~p~~~~a~~ 76 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAIT--RNPLVAVYYTNRALCYLKMQQPEQALADCRRAL---ELDGQSVKAHF 76 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHT---TSCTTCHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHH---HhCCCcHHHHH
Confidence 4455556667777777788888888877777 4454 4556667777777777777777777765 34554 44566
Q ss_pred HHHHHHHhcCCHHHHHHHHhhC
Q 046257 622 CMVDLYSRAGMLEKAMDIINRM 643 (838)
Q Consensus 622 ~lv~~l~r~G~~~~A~~~~~~m 643 (838)
.+..+|.+.|++++|...++++
T Consensus 77 ~lg~~~~~l~~~~~A~~~~~~a 98 (201)
T d2c2la1 77 FLGQCQLEMESYDEAIANLQRA 98 (201)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 6777777777777777777765
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.12 E-value=1.6e-05 Score=73.70 Aligned_cols=138 Identities=14% Similarity=0.152 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCC-CchHHHHHHH
Q 046257 548 SWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPT-MEHYSCMVDL 626 (838)
Q Consensus 548 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~ 626 (838)
.|+- ...+...|++++|++.|+++ ..|+..++..+..++...|++++|.+.|+..++ +.|+ ...|..+..+
T Consensus 8 l~~~-g~~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~---ldp~~~~a~~~~g~~ 79 (192)
T d1hh8a_ 8 LWNE-GVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSIN---RDKHLAVAYFQRGML 79 (192)
T ss_dssp HHHH-HHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHH
T ss_pred HHHH-HHHHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHH---HhhhhhhhHHHHHHH
Confidence 3553 66778899999999999864 456778888999999999999999999999984 3464 4678889999
Q ss_pred HHhcCCHHHHHHHHhhCC--CCCCHH-HHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 046257 627 YSRAGMLEKAMDIINRMP--FAASAT-VWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMNDR 698 (838)
Q Consensus 627 l~r~G~~~~A~~~~~~m~--~~~~~~-~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~~ 698 (838)
|.+.|++++|.+.|++.- ..++.. .+..+ -+...+....++..++.+|...|+|++|.+.++...+.
T Consensus 80 ~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~-----~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~ 149 (192)
T d1hh8a_ 80 YYQTEKYDLAIKDLKEALIQLRGNQLIDYKIL-----GLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 149 (192)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTTTCSEEECGGG-----TBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHhhccHHHHHHHHHHHHHhCccCchHHHHHh-----hhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 999999999999988751 011100 00000 00111122356778999999999999999999887654
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.09 E-value=3.3e-06 Score=79.20 Aligned_cols=95 Identities=9% Similarity=-0.051 Sum_probs=83.2
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHH
Q 046257 513 NALCVSSALVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVI 588 (838)
Q Consensus 513 ~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll 588 (838)
|+..-.......|.+.|++++|...|++.. +.+...|+.+..+|.+.|++++|+..|++.++ +.|+ ..+|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~--l~p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHH--hCCCcHHHHHHHH
Confidence 445556667888999999999999998765 56888999999999999999999999999998 7887 46788999
Q ss_pred HHHhccCCHHHHHHHHHHHHh
Q 046257 589 TACTHAGLVDEGQQYFDIMVN 609 (838)
Q Consensus 589 ~a~~~~g~~~~a~~~~~~m~~ 609 (838)
.++...|++++|...|+...+
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 999999999999999998763
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.05 E-value=1.8e-05 Score=70.76 Aligned_cols=90 Identities=14% Similarity=0.101 Sum_probs=80.9
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhcCCccC-CCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccC
Q 046257 587 VITACTHAGLVDEGQQYFDIMVNEHHIYP-TMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQ 665 (838)
Q Consensus 587 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~ 665 (838)
-.+.|.+.|++++|...|+..++. .| +...|..+..+|.+.|++++|.+.++++ ++++
T Consensus 16 ~gn~~~~~~~y~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~A~~~~~ka------------------l~~~ 74 (159)
T d1a17a_ 16 QANDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRA------------------IELD 74 (159)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHH------------------HHHC
T ss_pred HHHHHHHcCCHHHHHHHhhhcccc---chhhhhhhhhhHHHHHhccccchHHHHHHHH------------------HHHc
Confidence 345678999999999999999854 45 4567888999999999999999999988 8999
Q ss_pred CCCchhHHHHHHHHHhcCCchHHHHHHHHHhh
Q 046257 666 PHDSAIYVLLSNMYAATGHWQERARVRKLMND 697 (838)
Q Consensus 666 P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~ 697 (838)
|++..+|..++.+|...|++++|...+++...
T Consensus 75 p~~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~ 106 (159)
T d1a17a_ 75 KKYIKGYYRRAASNMALGKFRAALRDYETVVK 106 (159)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999998875
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.03 E-value=1.2e-05 Score=72.99 Aligned_cols=118 Identities=12% Similarity=0.009 Sum_probs=91.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC----------------hhHHHHHHHHHhccCCHHHHHHHHHHHHhcCC
Q 046257 549 WNSMICGYAQHGHTKKALEVFKEMRRQDLEFD----------------GITFIGVITACTHAGLVDEGQQYFDIMVNEHH 612 (838)
Q Consensus 549 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd----------------~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 612 (838)
+......|.+.|++++|++.|++.++. .|. ..+|+.+..+|.+.|++++|...++..++.
T Consensus 16 l~~~G~~~~~~~~~~~Ai~~y~~al~~--~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~-- 91 (170)
T d1p5qa1 16 VKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL-- 91 (170)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhc--
Confidence 444555666677777777777766652 111 135666778889999999999999998843
Q ss_pred ccC-CCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHH
Q 046257 613 IYP-TMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERA 689 (838)
Q Consensus 613 ~~p-~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~ 689 (838)
.| ++..|..+..+|...|++++|...|++. ++++|+|+.+...++.++...+...+..
T Consensus 92 -~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a------------------l~l~P~n~~~~~~l~~~~~~~~~~~~~e 150 (170)
T d1p5qa1 92 -DSNNEKGLSRRGEAHLAVNDFELARADFQKV------------------LQLYPNNKAAKTQLAVCQQRIRRQLARE 150 (170)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH------------------HHHCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred -cccchhhhHHHHHHHHHhhhHHHHHHHHHHH------------------HHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 46 5667888999999999999999999987 8999999999999999988776666543
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.99 E-value=3e-05 Score=70.18 Aligned_cols=97 Identities=7% Similarity=-0.026 Sum_probs=81.0
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCC-------------chHHHHHHHHHhcCCHHHHHHHHhhCCCCCCH
Q 046257 583 TFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTM-------------EHYSCMVDLYSRAGMLEKAMDIINRMPFAASA 649 (838)
Q Consensus 583 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-------------~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~ 649 (838)
.+......+...|++++|...|...+....-.+.. ..|..+..+|.+.|++++|++.+++.
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~a------ 88 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKA------ 88 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhh------
Confidence 34445567889999999999999887543332221 23566788899999999999999987
Q ss_pred HHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhh
Q 046257 650 TVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMND 697 (838)
Q Consensus 650 ~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~ 697 (838)
++++|+++.+|..++.+|...|++++|...++...+
T Consensus 89 ------------l~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 124 (170)
T d1p5qa1 89 ------------LELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQ 124 (170)
T ss_dssp ------------HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ------------hhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999876
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.99 E-value=7.3e-06 Score=69.39 Aligned_cols=110 Identities=9% Similarity=0.026 Sum_probs=81.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccCC---HHHHHHHHHHHHhcCCccCC-CchHHHHH
Q 046257 550 NSMICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITACTHAGL---VDEGQQYFDIMVNEHHIYPT-MEHYSCMV 624 (838)
Q Consensus 550 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~---~~~a~~~~~~m~~~~~~~p~-~~~y~~lv 624 (838)
..+++.+...+++++|.+.|++.+. ..|+ ..++..+..++.+.++ +++|..+++.+... ...|+ ...+..+.
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~--~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~-~~~~~~~~~~~~Lg 79 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKA--AGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK-GSKEEQRDYVFYLA 79 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--HSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT-SCHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhc-cCCchHHHHHHHHH
Confidence 3566777788899999999999988 4555 5677778888876554 45688888887632 22222 23566788
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHH
Q 046257 625 DLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYA 680 (838)
Q Consensus 625 ~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~ 680 (838)
.+|.+.|++++|++.++++ ++++|++..+..++..+..
T Consensus 80 ~~y~~~g~~~~A~~~~~~a------------------L~~~P~~~~A~~l~~~I~~ 117 (122)
T d1nzna_ 80 VGNYRLKEYEKALKYVRGL------------------LQTEPQNNQAKELERLIDK 117 (122)
T ss_dssp HHHHHTTCHHHHHHHHHHH------------------HHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHH------------------HHhCcCCHHHHHHHHHHHH
Confidence 8999999999999999987 7889988887776665543
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.94 E-value=5.6e-05 Score=66.92 Aligned_cols=134 Identities=11% Similarity=0.058 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCCchHHHHHH
Q 046257 546 LVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVD 625 (838)
Q Consensus 546 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~ 625 (838)
...+......+.+.|++++|+..|++.+.. -|..... .-.........+ ....|..+..
T Consensus 17 a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~--~~~~~~~-----------~~~~~~~~~~~~--------~~~~~~Nla~ 75 (153)
T d2fbna1 17 AFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEW-----------DDQILLDKKKNI--------EISCNLNLAT 75 (153)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTC-----------CCHHHHHHHHHH--------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--Ccchhhh-----------hhHHHHHhhhhH--------HHHHHhhHHH
Confidence 356777888899999999999999998872 2221100 000000001111 1235777889
Q ss_pred HHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhhCCCccCCc
Q 046257 626 LYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMNDRKVKKEAG 705 (838)
Q Consensus 626 ~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~~~~ 705 (838)
.|.+.|++++|++.+++. ++++|++..+|..++.+|...|++++|...++...+.
T Consensus 76 ~~~~l~~~~~Al~~~~~a------------------l~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l------- 130 (153)
T d2fbna1 76 CYNKNKDYPKAIDHASKV------------------LKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL------- 130 (153)
T ss_dssp HHHHTTCHHHHHHHHHHH------------------HHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-------
T ss_pred HHHHhcccchhhhhhhcc------------------ccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh-------
Confidence 999999999999999987 8999999999999999999999999999999988752
Q ss_pred eeEEEECCEEEEEeeCCCCCCChHHHHHHHHHHHHHHHH
Q 046257 706 YSWIEVKNKTYSFLAGDISHPQSNQIYSKLEELSTRLKD 744 (838)
Q Consensus 706 ~s~i~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~~ 744 (838)
.|...++...+..+..++++
T Consensus 131 -------------------~P~n~~~~~~l~~~~~kl~~ 150 (153)
T d2fbna1 131 -------------------NPNNLDIRNSYELCVNKLKE 150 (153)
T ss_dssp -------------------STTCHHHHHHHHHHHHHHHH
T ss_pred -------------------CCCCHHHHHHHHHHHHHHHH
Confidence 46667777777777777664
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.89 E-value=1.5e-05 Score=66.37 Aligned_cols=88 Identities=13% Similarity=0.035 Sum_probs=67.6
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhcCCccC-CCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccC
Q 046257 587 VITACTHAGLVDEGQQYFDIMVNEHHIYP-TMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQ 665 (838)
Q Consensus 587 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~ 665 (838)
....+.+.|++++|...|+..++. .| +...|..+..++.+.|++++|+..+++. ++++
T Consensus 22 ~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~a------------------l~~~ 80 (112)
T d1hxia_ 22 EGLSMLKLANLAEAALAFEAVCQK---EPEREEAWRSLGLTQAENEKDGLAIIALNHA------------------RMLD 80 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHH------------------HHHC
T ss_pred HHHHHHHHhhhHHHHHHHhhhccc---ccccchhhhhhhhhhhhhhhHHHhhcccccc------------------cccc
Confidence 445566777788888887777643 34 3556777778888888888888888876 7788
Q ss_pred CCCchhHHHHHHHHHhcCCchHHHHHHHHH
Q 046257 666 PHDSAIYVLLSNMYAATGHWQERARVRKLM 695 (838)
Q Consensus 666 P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m 695 (838)
|+++.++..|+.+|...|++++|.+.+++.
T Consensus 81 p~~~~a~~~la~~y~~~g~~~~A~~~l~~~ 110 (112)
T d1hxia_ 81 PKDIAVHAALAVSHTNEHNANAALASLRAW 110 (112)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHCCCHHHHHHHHHHH
Confidence 888888888888888888888888877753
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.88 E-value=7.7e-05 Score=74.17 Aligned_cols=161 Identities=10% Similarity=0.043 Sum_probs=118.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcC-----CCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-C----hhHHH
Q 046257 520 ALVTMYSKKGNIESASEVFKRQR-----KRD----LVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEF-D----GITFI 585 (838)
Q Consensus 520 ~li~~y~k~g~~~~A~~~f~~~~-----~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d----~~t~~ 585 (838)
-..+.|..+|++++|.+.|.+.. ..+ ..+|+.+...|.+.|++++|++.|++..+.-... + ..++.
T Consensus 42 ~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 121 (290)
T d1qqea_ 42 QAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKF 121 (290)
T ss_dssp HHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHH
Confidence 34567999999999999998664 122 3578999999999999999999999876621111 1 24566
Q ss_pred HHHHHHh-ccCCHHHHHHHHHHHHhcCCccCC----CchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 046257 586 GVITACT-HAGLVDEGQQYFDIMVNEHHIYPT----MEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACR 660 (838)
Q Consensus 586 ~ll~a~~-~~g~~~~a~~~~~~m~~~~~~~p~----~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~ 660 (838)
.+...|. ..|++++|.++++...+.+....+ ..+|..+.+.|.+.|++++|.+.+++.
T Consensus 122 ~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~----------------- 184 (290)
T d1qqea_ 122 ELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKL----------------- 184 (290)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-----------------
T ss_pred HHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHH-----------------
Confidence 6666664 469999999999887633211111 234777899999999999999999876
Q ss_pred HhccCCCCc-------hhHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 046257 661 LISLQPHDS-------AIYVLLSNMYAATGHWQERARVRKLMNDR 698 (838)
Q Consensus 661 ~~~l~P~~~-------~~y~~l~~~y~~~g~~~~a~~~~~~m~~~ 698 (838)
....|.++ ..+..++..|...|+++.|.+.++...+.
T Consensus 185 -~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~ 228 (290)
T d1qqea_ 185 -IKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE 228 (290)
T ss_dssp -HHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC
T ss_pred -HHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 33333332 34566777888999999999999988654
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.75 E-value=0.00016 Score=63.90 Aligned_cols=123 Identities=13% Similarity=0.054 Sum_probs=80.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccC
Q 046257 518 SSALVTMYSKKGNIESASEVFKRQRKRDLVSWNSMICGYAQHG--HTKKALEVFKEMRRQDLEFDGITFIGVITACTHAG 595 (838)
Q Consensus 518 ~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g--~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g 595 (838)
+..-.+.+.+.|++++|...|.+...- +.... ...........+ ...+|..+..++.+.|
T Consensus 20 ~~~~G~~~f~~~~y~~A~~~Y~~al~~-----------~~~~~~~~~~~~~~~~~~~-------~~~~~~Nla~~~~~l~ 81 (153)
T d2fbna1 20 IKEEGNEFFKKNEINEAIVKYKEALDF-----------FIHTEEWDDQILLDKKKNI-------EISCNLNLATCYNKNK 81 (153)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHT-----------TTTCTTCCCHHHHHHHHHH-------HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh-----------CcchhhhhhHHHHHhhhhH-------HHHHHhhHHHHHHHhc
Confidence 344556788999999999998765310 00000 000000000011 1235667777888888
Q ss_pred CHHHHHHHHHHHHhcCCccC-CCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHH
Q 046257 596 LVDEGQQYFDIMVNEHHIYP-TMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVL 674 (838)
Q Consensus 596 ~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~ 674 (838)
++++|.+.++..++. .| +...|..+..+|...|++++|...|++. ++++|+|+.+...
T Consensus 82 ~~~~Al~~~~~al~~---~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~a------------------l~l~P~n~~~~~~ 140 (153)
T d2fbna1 82 DYPKAIDHASKVLKI---DKNNVKALYKLGVANMYFGFLEEAKENLYKA------------------ASLNPNNLDIRNS 140 (153)
T ss_dssp CHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHTCHHHHHHHHHHH------------------HHHSTTCHHHHHH
T ss_pred ccchhhhhhhccccc---cchhhhhhHHhHHHHHHcCCHHHHHHHHHHH------------------HHhCCCCHHHHHH
Confidence 888888888887733 45 4567888888888888999988888876 7888888887766
Q ss_pred HHHHH
Q 046257 675 LSNMY 679 (838)
Q Consensus 675 l~~~y 679 (838)
+..+.
T Consensus 141 l~~~~ 145 (153)
T d2fbna1 141 YELCV 145 (153)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65554
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.73 E-value=0.00036 Score=62.66 Aligned_cols=109 Identities=8% Similarity=0.082 Sum_probs=76.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccC-CCchHHHHHHHH
Q 046257 549 WNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYP-TMEHYSCMVDLY 627 (838)
Q Consensus 549 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l 627 (838)
+......+...|++++|++.|++.++. .+. ........+.. .+.| ....|..+..+|
T Consensus 30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~--~~~----------~~~~~~~~~~~----------~~~~~~~~~~~nla~~~ 87 (169)
T d1ihga1 30 LKNIGNTFFKSQNWEMAIKKYTKVLRY--VEG----------SRAAAEDADGA----------KLQPVALSCVLNIGACK 87 (169)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--HHH----------HHHHSCHHHHG----------GGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--hhh----------hhhhhhhHHHH----------HhChhhHHHHHHHHHHH
Confidence 344566677888999999888887651 110 00001111110 1122 234566778888
Q ss_pred HhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhh
Q 046257 628 SRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMND 697 (838)
Q Consensus 628 ~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~ 697 (838)
.+.|++++|+..++++ ++++|+++.+|..++.+|...|++++|...+++..+
T Consensus 88 ~~~~~~~~Ai~~~~~a------------------l~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~ 139 (169)
T d1ihga1 88 LKMSDWQGAVDSCLEA------------------LEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE 139 (169)
T ss_dssp HHTTCHHHHHHHHHHH------------------HTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred Hhhcccchhhhhhhhh------------------hhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHH
Confidence 8999999999999887 788999999999999999999999999999888875
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.72 E-value=0.00022 Score=64.02 Aligned_cols=131 Identities=8% Similarity=0.019 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCCchHHHHHHH
Q 046257 547 VSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDL 626 (838)
Q Consensus 547 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~ 626 (838)
..+......+.+.|++++|+..|++.+.. .|... ....+. ......+. ...|..+..+
T Consensus 16 ~~~~e~G~~~~~~~~~~~A~~~Y~~al~~--~~~~~-----------~~~~~~-~~~~~~~~--------~~~~~Nla~~ 73 (168)
T d1kt1a1 16 AIVKEKGTVYFKGGKYVQAVIQYGKIVSW--LEMEY-----------GLSEKE-SKASESFL--------LAAFLNLAMC 73 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCC-----------SCCHHH-HHHHHHHH--------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--HHHhh-----------ccchhh-hhhcchhH--------HHHHHhHHHH
Confidence 45666777788888888888888776652 11100 000011 01111111 1246667888
Q ss_pred HHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhhCCCccCCce
Q 046257 627 YSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMNDRKVKKEAGY 706 (838)
Q Consensus 627 l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~~~~~ 706 (838)
|.+.|++++|++.+++. ++++|++..+|..++.+|...|++++|...++...+.
T Consensus 74 ~~~l~~~~~Ai~~~~~a------------------l~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l-------- 127 (168)
T d1kt1a1 74 YLKLREYTKAVECCDKA------------------LGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV-------- 127 (168)
T ss_dssp HHHTTCHHHHHHHHHHH------------------HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--------
T ss_pred HHHhhhcccchhhhhhh------------------hhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------
Confidence 99999999999999987 8899999999999999999999999999999998752
Q ss_pred eEEEECCEEEEEeeCCCCCCChHHHHHHHHHHHHHHH
Q 046257 707 SWIEVKNKTYSFLAGDISHPQSNQIYSKLEELSTRLK 743 (838)
Q Consensus 707 s~i~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~ 743 (838)
.|...++...+..+...+.
T Consensus 128 ------------------~P~n~~~~~~l~~~~~~~~ 146 (168)
T d1kt1a1 128 ------------------NPQNKAARLQIFMCQKKAK 146 (168)
T ss_dssp ------------------CTTCHHHHHHHHHHHHHHH
T ss_pred ------------------CCCCHHHHHHHHHHHHHHH
Confidence 4556667777666655544
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.69 E-value=0.00011 Score=62.55 Aligned_cols=90 Identities=12% Similarity=0.168 Sum_probs=56.5
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhcCCccC-CCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccC
Q 046257 587 VITACTHAGLVDEGQQYFDIMVNEHHIYP-TMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQ 665 (838)
Q Consensus 587 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~ 665 (838)
+...+...|++++|..+|+..++. .| +...|..+..+|.+.|++++|.+.++++ ++++
T Consensus 10 ~G~~~~~~~~y~~Ai~~y~~al~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a------------------l~l~ 68 (128)
T d1elra_ 10 LGNDAYKKKDFDTALKHYDKAKEL---DPTNMTYITNQAAVYFEKGDYNKCRELCEKA------------------IEVG 68 (128)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH------------------HHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHHHhHHHHHHHcCchHHHHHHHHHH------------------HHhC
Confidence 444555555666666665555532 23 2344555666666666666666666655 4445
Q ss_pred CCCch-------hHHHHHHHHHhcCCchHHHHHHHHHhh
Q 046257 666 PHDSA-------IYVLLSNMYAATGHWQERARVRKLMND 697 (838)
Q Consensus 666 P~~~~-------~y~~l~~~y~~~g~~~~a~~~~~~m~~ 697 (838)
|+++. +|..++.++...+++++|.+.+++-..
T Consensus 69 ~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 69 RENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 54443 466677888999999999999987643
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.67 E-value=0.00027 Score=70.07 Aligned_cols=26 Identities=8% Similarity=0.009 Sum_probs=13.9
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHhhh
Q 046257 248 WNSMVAGYVTNELHMEAFETFNNMGL 273 (838)
Q Consensus 248 ~n~li~~~~~~g~~~~A~~l~~~m~~ 273 (838)
|+.+...|...|++++|++.|++...
T Consensus 161 ~~~la~~~~~~g~y~~A~~~~~~~~~ 186 (290)
T d1qqea_ 161 FIKCADLKALDGQYIEASDIYSKLIK 186 (290)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcChHHHHHHHHHHHHH
Confidence 44445555555555555555555443
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.61 E-value=0.00022 Score=64.02 Aligned_cols=141 Identities=11% Similarity=0.036 Sum_probs=95.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHcCCCCChhHHHHHHHHHhcc
Q 046257 516 CVSSALVTMYSKKGNIESASEVFKRQRKRDLVSWNSMICGYAQHGH-TKKALEVFKEMRRQDLEFDGITFIGVITACTHA 594 (838)
Q Consensus 516 ~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~ 594 (838)
..+......+.+.|++++|...|.+.. ..+-..-. ..+-....+.+. ...|..+..++.+.
T Consensus 16 ~~~~e~G~~~~~~~~~~~A~~~Y~~al-----------~~~~~~~~~~~~~~~~~~~~~-------~~~~~Nla~~~~~l 77 (168)
T d1kt1a1 16 AIVKEKGTVYFKGGKYVQAVIQYGKIV-----------SWLEMEYGLSEKESKASESFL-------LAAFLNLAMCYLKL 77 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH-----------HHHTTCCSCCHHHHHHHHHHH-------HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH-----------HHHHHhhccchhhhhhcchhH-------HHHHHhHHHHHHHh
Confidence 345556778889999999999987532 11100000 001111111111 23466677778889
Q ss_pred CCHHHHHHHHHHHHhcCCccC-CCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHH
Q 046257 595 GLVDEGQQYFDIMVNEHHIYP-TMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYV 673 (838)
Q Consensus 595 g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~ 673 (838)
|++++|...++..++. .| +...|..+..+|...|++++|.+.|+++ ++++|+++.+..
T Consensus 78 ~~~~~Ai~~~~~al~l---~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~a------------------l~l~P~n~~~~~ 136 (168)
T d1kt1a1 78 REYTKAVECCDKALGL---DSANEKGLYRRGEAQLLMNEFESAKGDFEKV------------------LEVNPQNKAARL 136 (168)
T ss_dssp TCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH------------------HHSCTTCHHHHH
T ss_pred hhcccchhhhhhhhhc---ccchHHHHHHHHHHHHHcCCHHHHHHHHHHH------------------HHhCCCCHHHHH
Confidence 9999999999888743 34 4567777889999999999999999987 789999999999
Q ss_pred HHHHHHHhcCCchH-HHHHHHHH
Q 046257 674 LLSNMYAATGHWQE-RARVRKLM 695 (838)
Q Consensus 674 ~l~~~y~~~g~~~~-a~~~~~~m 695 (838)
.+..+....+...+ ..+++..|
T Consensus 137 ~l~~~~~~~~~~~e~~kk~~~~~ 159 (168)
T d1kt1a1 137 QIFMCQKKAKEHNERDRRTYANM 159 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHH
Confidence 99888877766543 34444444
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.57 E-value=0.00015 Score=61.01 Aligned_cols=92 Identities=5% Similarity=-0.036 Sum_probs=74.7
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhcCCccC-CCchHHHHHHHHHhcCCH---HHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 046257 585 IGVITACTHAGLVDEGQQYFDIMVNEHHIYP-TMEHYSCMVDLYSRAGML---EKAMDIINRMPFAASATVWRTVLAACR 660 (838)
Q Consensus 585 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~G~~---~~A~~~~~~m~~~~~~~~w~~ll~~c~ 660 (838)
..+++.+...+++++|.+.|+..... .| ++.++..+..+|.+.++. ++|+++++++
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~---~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~----------------- 62 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAA---GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEEL----------------- 62 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHH-----------------
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHH-----------------
Confidence 35778888899999999999998843 45 557888889999876655 5699999886
Q ss_pred HhccCCCC--chhHHHHHHHHHhcCCchHHHHHHHHHhh
Q 046257 661 LISLQPHD--SAIYVLLSNMYAATGHWQERARVRKLMND 697 (838)
Q Consensus 661 ~~~l~P~~--~~~y~~l~~~y~~~g~~~~a~~~~~~m~~ 697 (838)
++.+|.+ ..++..|+.+|...|++++|.+.+++..+
T Consensus 63 -l~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~ 100 (122)
T d1nzna_ 63 -LPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 100 (122)
T ss_dssp -TTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -HhccCCchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 5566643 34788999999999999999999999976
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.56 E-value=0.03 Score=55.25 Aligned_cols=49 Identities=14% Similarity=0.080 Sum_probs=21.8
Q ss_pred ChhhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHcC
Q 046257 279 TRSTFVSVIKLCATTKELRLARQLHSQVLKNGIDFDHNIRTGLMVAYSKC 328 (838)
Q Consensus 279 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~ 328 (838)
+......++..+-..|..++...+++..... -..+..+++-|+..|++.
T Consensus 98 ~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~ 146 (336)
T d1b89a_ 98 HADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF 146 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHh
Confidence 3333444444444445555444444443321 123344445555555554
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.54 E-value=0.00016 Score=59.81 Aligned_cols=80 Identities=14% Similarity=0.107 Sum_probs=36.8
Q ss_pred HHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccCCHHHH
Q 046257 525 YSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITACTHAGLVDEG 600 (838)
Q Consensus 525 y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a 600 (838)
+.+.|++++|...|++.. +.+...|..+...|.+.|++++|+..|++..+ +.|+ ...+..+...+...|+.++|
T Consensus 26 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~a~~~la~~y~~~g~~~~A 103 (112)
T d1hxia_ 26 MLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARM--LDPKDIAVHAALAVSHTNEHNANAA 103 (112)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccc--cccccccchHHHHHHHHHCCCHHHH
Confidence 444455555555444433 22344444444455555555555555555444 3333 23344444444444444444
Q ss_pred HHHHHH
Q 046257 601 QQYFDI 606 (838)
Q Consensus 601 ~~~~~~ 606 (838)
.+.+++
T Consensus 104 ~~~l~~ 109 (112)
T d1hxia_ 104 LASLRA 109 (112)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.39 E-value=0.00043 Score=62.59 Aligned_cols=121 Identities=7% Similarity=-0.012 Sum_probs=85.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCCchHHHHHHHHH
Q 046257 549 WNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYS 628 (838)
Q Consensus 549 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~ 628 (838)
+..........|++++|.+.|.+.+. +.|...- ..+........-..-++.. ....+..++..+.
T Consensus 14 ~~~~g~~~~~~g~~e~A~~~~~~AL~--l~rG~~l-----~~~~~~~w~~~~r~~l~~~--------~~~a~~~la~~~~ 78 (179)
T d2ff4a2 14 EKTAGVHAAAAGRFEQASRHLSAALR--EWRGPVL-----DDLRDFQFVEPFATALVED--------KVLAHTAKAEAEI 78 (179)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHT--TCCSSTT-----GGGTTSTTHHHHHHHHHHH--------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHh--hCccccc-----ccCcchHHHHHHHHHHHHH--------HHHHHHHHHHHHH
Confidence 34455677888999999999999987 3333210 0000001111111111111 1245677889999
Q ss_pred hcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhh-----CCCcc
Q 046257 629 RAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMND-----RKVKK 702 (838)
Q Consensus 629 r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~-----~g~~~ 702 (838)
+.|++++|...++++ ++++|.+...|..|+.+|...|++++|.+.|+.+++ .|+.+
T Consensus 79 ~~g~~~~Al~~~~~a------------------l~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P 139 (179)
T d2ff4a2 79 ACGRASAVIAELEAL------------------TFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDP 139 (179)
T ss_dssp HTTCHHHHHHHHHHH------------------HHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred HCCCchHHHHHHHHH------------------HHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCc
Confidence 999999999999987 899999999999999999999999999999998753 46654
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.38 E-value=0.06 Score=53.05 Aligned_cols=262 Identities=11% Similarity=0.041 Sum_probs=112.0
Q ss_pred CcccHHHHHHHhccCCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHccCCCCCcchHHHHHHHHHh
Q 046257 77 FGSTLSSVLKTCGCLFDHVFGRQVHCECVKSGFARDVNVSTSLVDLYMRTNNVEDGRRVFDDMNESNVVSWTSLLSGYAR 156 (838)
Q Consensus 77 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~ 156 (838)
+..-...+..-|-+.|.++.|..++..+ .-|..++..|.+.++++.|.+++.... +..+|..+...+.+
T Consensus 13 n~~d~~~i~~~c~~~~lye~A~~lY~~~---------~d~~rl~~~~v~l~~~~~avd~~~k~~--~~~~~k~~~~~l~~ 81 (336)
T d1b89a_ 13 NNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACVD 81 (336)
T ss_dssp ----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHCCCHHHHHHHHHhC---------CCHHHHHHHHHhhccHHHHHHHHHHcC--CHHHHHHHHHHHHh
Confidence 3333344444555555555555554421 123444555555555555555554332 33355555555554
Q ss_pred CCCchHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHcCCChhHHHHH
Q 046257 157 NKMNDRVLELFHRMQVEGIKPNSFTFSTVLGVLADEGIVATAVQVHTMVIKNGGEVVTSVCNALISMYLKSKMVRDARAV 236 (838)
Q Consensus 157 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 236 (838)
.....-+ .+.......++.....++..+-..|..++...+++..+... ..+..+++.++..|++.+. ++-.+.
T Consensus 82 ~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~-~~~~~~~~~L~~lyak~~~-~kl~e~ 154 (336)
T d1b89a_ 82 GKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKP-QKMREH 154 (336)
T ss_dssp TTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCH-HHHHHH
T ss_pred CcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC-ccchHHHHHHHHHHHHhCh-HHHHHH
Confidence 4433222 11122223344444455555555555555555555443221 3344455555555555432 222222
Q ss_pred HhcCCCC-----------CcchHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHH
Q 046257 237 FDGMEDR-----------DSITWNSMVAGYVTNELHMEAFETFNNMGLAGAELTRSTFVSVIKLCATTKELRLARQLHSQ 305 (838)
Q Consensus 237 f~~m~~~-----------~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 305 (838)
+.....+ ....|..++-.|.+.|.+++|+.+.-. . .++..-....+..+.+..+.+...++...
T Consensus 155 l~~~s~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~---~--~~~~~~~~~f~e~~~k~~N~e~~~~~i~~ 229 (336)
T d1b89a_ 155 LELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMN---H--PTDAWKEGQFKDIITKVANVELYYRAIQF 229 (336)
T ss_dssp HHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHH---S--TTTTCCHHHHHHHHHHCSSTHHHHHHHHH
T ss_pred HHhccccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHHH---c--chhhhhHHHHHHHHHccCChHHHHHHHHH
Confidence 2221110 111244444455555555555443221 1 22222333444455556666666555555
Q ss_pred HHHhCCCCChhHHHHHHHHHHcCCChHHHHHHH-------------HhcccCCCeeehHHHHHHHHHcCChHH
Q 046257 306 VLKNGIDFDHNIRTGLMVAYSKCGKMEDASKIF-------------SMMREMKDVVSWTAMISGHLQNGAIDL 365 (838)
Q Consensus 306 ~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f-------------~~~~~~~~~~~~~~li~~~~~~g~~~~ 365 (838)
.++. ++...+.|+......-+..+..+.| +...+..+....+++...|...++++.
T Consensus 230 yL~~----~p~~i~~lL~~v~~~~d~~r~V~~~~k~~~l~li~p~Le~v~~~n~~~vn~al~~lyie~~d~~~ 298 (336)
T d1b89a_ 230 YLEF----KPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQA 298 (336)
T ss_dssp HHHH----CGGGHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHc----CHHHHHHHHHHhccCCCHHHHHHHHHhcCCcHHHHHHHHHHHHcChHHHHHHHHHHHhCcchhHH
Confidence 5543 1233344444444444444444444 333322344556777777887777544
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.30 E-value=0.0012 Score=59.02 Aligned_cols=129 Identities=11% Similarity=0.063 Sum_probs=88.5
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccCCHHH
Q 046257 521 LVTMYSKKGNIESASEVFKRQRKRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITACTHAGLVDE 599 (838)
Q Consensus 521 li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~ 599 (838)
....+.+.|++++|.+.|.+... +...........+. .-+.|. ...+..+..++.+.|++++
T Consensus 33 ~~~~~~~~~~y~~Ai~~y~~al~--------~~~~~~~~~~~~~~---------~~~~~~~~~~~~nla~~~~~~~~~~~ 95 (169)
T d1ihga1 33 IGNTFFKSQNWEMAIKKYTKVLR--------YVEGSRAAAEDADG---------AKLQPVALSCVLNIGACKLKMSDWQG 95 (169)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--------HHHHHHHHSCHHHH---------GGGHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH--------hhhhhhhhhhhHHH---------HHhChhhHHHHHHHHHHHHhhcccch
Confidence 34557889999999988865421 00000000111111 112333 3456677788889999999
Q ss_pred HHHHHHHHHhcCCccC-CCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHH
Q 046257 600 GQQYFDIMVNEHHIYP-TMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNM 678 (838)
Q Consensus 600 a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~ 678 (838)
|...++..++ +.| +...|..+..+|.+.|++++|.+.|++. ++++|+|+.++..|..+
T Consensus 96 Ai~~~~~al~---~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~a------------------l~l~p~n~~~~~~l~~~ 154 (169)
T d1ihga1 96 AVDSCLEALE---IDPSNTKALYRRAQGWQGLKEYDQALADLKKA------------------QEIAPEDKAIQAELLKV 154 (169)
T ss_dssp HHHHHHHHHT---TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH------------------HHHCTTCHHHHHHHHHH
T ss_pred hhhhhhhhhh---hhhhhhhHHHhHHHHHHHccCHHHHHHHHHHH------------------HHhCCCCHHHHHHHHHH
Confidence 9999998873 345 4567888899999999999999999987 78999999998888887
Q ss_pred HHhcCCchH
Q 046257 679 YAATGHWQE 687 (838)
Q Consensus 679 y~~~g~~~~ 687 (838)
+.......+
T Consensus 155 ~~~l~~~~~ 163 (169)
T d1ihga1 155 KQKIKAQKD 163 (169)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 765544443
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.29 E-value=0.00045 Score=58.60 Aligned_cols=86 Identities=9% Similarity=0.174 Sum_probs=46.7
Q ss_pred HHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh--------hHHHHHHH
Q 046257 521 LVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDG--------ITFIGVIT 589 (838)
Q Consensus 521 li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~--------~t~~~ll~ 589 (838)
+.+.|.+.|++++|.+.|.+.. +.+..+|..+..+|.+.|++++|++.++++++ +.|+. .+|..+..
T Consensus 10 ~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~--l~~~~~~~~~~~a~~~~~lg~ 87 (128)
T d1elra_ 10 LGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIE--VGRENREDYRQIAKAYARIGN 87 (128)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHHH
Confidence 3344556666666666665443 33455666666666666666666666666555 22221 23444444
Q ss_pred HHhccCCHHHHHHHHHHHH
Q 046257 590 ACTHAGLVDEGQQYFDIMV 608 (838)
Q Consensus 590 a~~~~g~~~~a~~~~~~m~ 608 (838)
.+...+++++|.++|+...
T Consensus 88 ~~~~~~~~~~A~~~~~kal 106 (128)
T d1elra_ 88 SYFKEEKYKDAIHFYNKSL 106 (128)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHH
Confidence 5555555566665555544
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.27 E-value=0.019 Score=55.05 Aligned_cols=147 Identities=11% Similarity=0.081 Sum_probs=62.7
Q ss_pred CCHHHHHHHHHhcCCC-CcchHHHHHHHHHh----cCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCChhhHHHHHH
Q 046257 427 GILDEAAKVFELIDEK-DIVAWSAMLAGYAQ----IGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQ 501 (838)
Q Consensus 427 g~~~~A~~~f~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~ 501 (838)
.+...|...+...... +...+..+...+.. ..+.+.|...+++....|.......+................+..
T Consensus 52 ~d~~~a~~~~~~a~~~~~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~l~~~~~~~~~~~~~~~~a~~ 131 (265)
T d1ouva_ 52 KNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVE 131 (265)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred hhHHHHHHhhcccccccccchhhccccccccccccchhhHHHHHHHhhhhhhhhhhHHHhhcccccCCCcccchhHHHHH
Confidence 3555555555544332 33344444444433 345666777777766655332222221111111111123333333
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHHHh----cCCHHHHHHHHHhcC-CCCHHHHHHHHHHHHH----cCChHHHHHHHHHH
Q 046257 502 FHACSIKAKLNNALCVSSALVTMYSK----KGNIESASEVFKRQR-KRDLVSWNSMICGYAQ----HGHTKKALEVFKEM 572 (838)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~li~~y~k----~g~~~~A~~~f~~~~-~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m 572 (838)
.+...... .+...+..|...|.. ..+...+...++... ..+..++..+...|.. ..+.++|+..|++.
T Consensus 132 ~~~~~~~~---~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~a 208 (265)
T d1ouva_ 132 YFTKACDL---NDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKA 208 (265)
T ss_dssp HHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHH
T ss_pred Hhhhhhcc---cccchhhhhhhhhccCCCcccccccchhhhhccccccccccccchhhhcccCcccccchhhhhhhHhhh
Confidence 33333222 123333334444433 334444444444433 2344444444444443 33555566666555
Q ss_pred HHcC
Q 046257 573 RRQD 576 (838)
Q Consensus 573 ~~~g 576 (838)
.+.|
T Consensus 209 a~~g 212 (265)
T d1ouva_ 209 CELE 212 (265)
T ss_dssp HHTT
T ss_pred hccc
Confidence 5544
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.10 E-value=0.00017 Score=62.88 Aligned_cols=44 Identities=9% Similarity=0.138 Sum_probs=30.3
Q ss_pred CHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhhCCC
Q 046257 632 MLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMNDRKV 700 (838)
Q Consensus 632 ~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~~g~ 700 (838)
.+++|.+.|++. ++++|+++.++..|+... .|.+++.+..++|+
T Consensus 101 ~~~~A~~~~~ka------------------l~l~P~~~~~~~~L~~~~-------ka~~~~~e~~k~~~ 144 (145)
T d1zu2a1 101 NFDLATQFFQQA------------------VDEQPDNTHYLKSLEMTA-------KAPQLHAEAYKQGL 144 (145)
T ss_dssp HHHHHHHHHHHH------------------HHHCTTCHHHHHHHHHHH-------THHHHHHHHHHSSS
T ss_pred hHHHhhhhhhcc------------------cccCCCHHHHHHHHHHHH-------HHHHHHHHHHHHhc
Confidence 357777777776 899999988877776664 45555555555553
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.09 E-value=0.019 Score=55.08 Aligned_cols=218 Identities=13% Similarity=0.066 Sum_probs=144.9
Q ss_pred hhhHHHHHHHHcCCHHHHHHHHHhcCC-CCcchHHHHHHHHHh----cCCchHHHHHHHHhhcCCCCCCHhhHHHHH-HH
Q 046257 415 VGTALLNAYVKKGILDEAAKVFELIDE-KDIVAWSAMLAGYAQ----IGDTEGAVKIYRQLTSEGVKPNEFTFSSVI-NA 488 (838)
Q Consensus 415 ~~~~Li~~y~~~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll-~a 488 (838)
.+..|...+.+.+++++|.+.|++..+ .+..++..|...|.. ..+...|...+......+...-...+..+. ..
T Consensus 4 ~~~~lG~~~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~~~a~~~l~~~~~~~ 83 (265)
T d1ouva_ 4 ELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSG 83 (265)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccccccchhhccccccccc
Confidence 344566778889999999999998764 466667677777776 557888999988877765322222222221 22
Q ss_pred hcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHH----hcCCHHHHHHHHHhcC-CCCHHHHHHHHHHHHH----c
Q 046257 489 CTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYS----KKGNIESASEVFKRQR-KRDLVSWNSMICGYAQ----H 559 (838)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~----k~g~~~~A~~~f~~~~-~~~~~~~~~li~~~~~----~ 559 (838)
+... ...+.+...+....+.|.... ...+...+. .......|...+.... ..+...+..|...|.. .
T Consensus 84 ~~~~-~~~~~a~~~~~~a~~~g~~~a---~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~ 159 (265)
T d1ouva_ 84 QGVS-QNTNKALQYYSKACDLKYAEG---CASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTP 159 (265)
T ss_dssp SSSC-CCHHHHHHHHHHHHHTTCHHH---HHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSC
T ss_pred cccc-hhhHHHHHHHhhhhhhhhhhH---HHhhcccccCCCcccchhHHHHHHhhhhhcccccchhhhhhhhhccCCCcc
Confidence 2333 677888888887777664322 222222333 3456777777776654 5677888888888876 4
Q ss_pred CChHHHHHHHHHHHHcCCCCChhHHHHHHHHHhc----cCCHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHh----cC
Q 046257 560 GHTKKALEVFKEMRRQDLEFDGITFIGVITACTH----AGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSR----AG 631 (838)
Q Consensus 560 g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r----~G 631 (838)
.+...+...++...+.| +......+...+.. ..+.++|..+|+...+ .| ++..+..|..+|.+ ..
T Consensus 160 ~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~-~g---~~~a~~~LG~~y~~G~g~~~ 232 (265)
T d1ouva_ 160 KDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACE-LE---NGGGCFNLGAMQYNGEGVTR 232 (265)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHTTSSSSC
T ss_pred cccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhc-cc---CHHHHHHHHHHHHcCCCCcc
Confidence 56778888888888765 45555555544443 5689999999998874 33 34556677777765 34
Q ss_pred CHHHHHHHHhhC
Q 046257 632 MLEKAMDIINRM 643 (838)
Q Consensus 632 ~~~~A~~~~~~m 643 (838)
+.++|.+.|++.
T Consensus 233 n~~~A~~~~~kA 244 (265)
T d1ouva_ 233 NEKQAIENFKKG 244 (265)
T ss_dssp CSTTHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 788899999875
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.06 E-value=0.00028 Score=75.90 Aligned_cols=204 Identities=8% Similarity=0.017 Sum_probs=88.0
Q ss_pred chHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCChhhHHHHHHHHHHHHH-----hcCC-CchhHHHHHHHHHHhcCCHHH
Q 046257 460 TEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFHACSIK-----AKLN-NALCVSSALVTMYSKKGNIES 533 (838)
Q Consensus 460 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~-----~~~~-~~~~~~~~li~~y~k~g~~~~ 533 (838)
+..+++.+++..+....++..-....+. +.+..+...+..++. .++. .+...+..+...+.+.|+.++
T Consensus 65 y~~~ie~~r~~~k~~~~~~~~~~~~~~~------~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~ 138 (497)
T d1ya0a1 65 FKNQITTLQGQAKNRANPNRSEVQANLS------LFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSA 138 (497)
T ss_dssp THHHHHHHHHHHSCSSCTTTTHHHHHHH------HHHHHHHHHHHHHHHHHTC---------------------------
T ss_pred HHHHHHHHHHhcccccCccHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHH
Confidence 4456666766665443444333322221 333333333333321 1222 233344455555666666666
Q ss_pred HHHHHHhcCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh-hHHHHHHHHHhccCCHHHHHHHHHHHHhcC
Q 046257 534 ASEVFKRQRKRD-LVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDG-ITFIGVITACTHAGLVDEGQQYFDIMVNEH 611 (838)
Q Consensus 534 A~~~f~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 611 (838)
|...+.....++ ..++..+...+...|++++|+..|++..+ +.|+. .+|+.+...+...|+..+|..+|.+....
T Consensus 139 A~~~~~~al~~~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~--l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~- 215 (497)
T d1ya0a1 139 IVKPQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQ--LVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV- 215 (497)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS-
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHcccHHHHHHHHHHHHH--HCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-
Confidence 665554433222 23455566666666677777777766666 45553 56666666666666766666666665521
Q ss_pred CccCCCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHH
Q 046257 612 HIYPTMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARV 691 (838)
Q Consensus 612 ~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~ 691 (838)
-.|-...+..|..+|.+..+..++ .+.... .+.-...++.+..++.....+++..++
T Consensus 216 -~~~~~~a~~nL~~~~~~~~~~~~~------~~~~~~----------------~~~~~~~f~~~~~~l~~~~~~~~~~~~ 272 (497)
T d1ya0a1 216 -KFPFPAASTNLQKALSKALESRDE------VKTKWG----------------VSDFIKAFIKFHGHVYLSKSLEKLSPL 272 (497)
T ss_dssp -SBCCHHHHHHHHHHHHHHTTSCCC------CCSSCC----------------HHHHHHHHHHHHHHHHHTCCGGGHHHH
T ss_pred -CCCCHHHHHHHHHHHHHhhhhhhh------hccccc----------------cchHHHHHHHHHHHHHhCCchhhHHHH
Confidence 123444555555555433221110 000000 011223456666677777777777666
Q ss_pred HHHH
Q 046257 692 RKLM 695 (838)
Q Consensus 692 ~~~m 695 (838)
.+.+
T Consensus 273 ~~~~ 276 (497)
T d1ya0a1 273 REKL 276 (497)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=96.87 E-value=0.00057 Score=59.42 Aligned_cols=96 Identities=6% Similarity=0.012 Sum_probs=63.3
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCh-hHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHhcCCHH
Q 046257 556 YAQHGHTKKALEVFKEMRRQDLEFDG-ITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLE 634 (838)
Q Consensus 556 ~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~ 634 (838)
|-+.+.+++|++.|++..+ +.|+. .++..+..++...+....+.+ ..+.++
T Consensus 7 ~~r~~~fe~A~~~~e~al~--~~P~~~~~~~~~g~~l~~~~~~~~~~e--------------------------~~~~~~ 58 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYK--SNPLDADNLTRWGGVLLELSQFHSISD--------------------------AKQMIQ 58 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCHHH--------------------------HHHHHH
T ss_pred HHHHccHHHHHHHHHHHHh--hCCcchHHHHHHHHHHHHhhhhhhhhH--------------------------HHHHHH
Confidence 3445566677777777766 45553 344444444443333222222 223467
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCC-----------chHHHHHHHHHhh
Q 046257 635 KAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGH-----------WQERARVRKLMND 697 (838)
Q Consensus 635 ~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~-----------~~~a~~~~~~m~~ 697 (838)
+|.+.++++ ++++|+++.+|..++++|...|+ +++|.+.+++..+
T Consensus 59 ~Ai~~~~kA------------------l~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~ 114 (145)
T d1zu2a1 59 EAITKFEEA------------------LLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD 114 (145)
T ss_dssp HHHHHHHHH------------------HHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH------------------HHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccc
Confidence 888888877 89999999999999999988765 5777777777754
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.85 E-value=0.00093 Score=58.89 Aligned_cols=97 Identities=10% Similarity=0.012 Sum_probs=67.3
Q ss_pred HHHHHH--HHHHHHcCChHHHHHHHHHHHHcCC-CCC----------hhHHHHHHHHHhccCCHHHHHHHHHHHHhcC--
Q 046257 547 VSWNSM--ICGYAQHGHTKKALEVFKEMRRQDL-EFD----------GITFIGVITACTHAGLVDEGQQYFDIMVNEH-- 611 (838)
Q Consensus 547 ~~~~~l--i~~~~~~g~~~~A~~l~~~m~~~g~-~pd----------~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-- 611 (838)
.+|..+ ...+.+.|++++|++.|++.++..- .|+ ..+|+.+..++...|++++|.+.++...+-+
T Consensus 8 ~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~ 87 (156)
T d2hr2a1 8 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 87 (156)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccc
Confidence 345555 3445567888888888888876210 111 2467788888888999999988888776321
Q ss_pred --CccCC-----CchHHHHHHHHHhcCCHHHHHHHHhhC
Q 046257 612 --HIYPT-----MEHYSCMVDLYSRAGMLEKAMDIINRM 643 (838)
Q Consensus 612 --~~~p~-----~~~y~~lv~~l~r~G~~~~A~~~~~~m 643 (838)
...++ ...|..+..+|...|++++|.+.+++.
T Consensus 88 ~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~A 126 (156)
T d2hr2a1 88 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKV 126 (156)
T ss_dssp HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 11111 113566789999999999999999986
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.80 E-value=0.0025 Score=57.38 Aligned_cols=70 Identities=9% Similarity=0.010 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHHH----hcCCccCCCch
Q 046257 548 SWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITACTHAGLVDEGQQYFDIMV----NEHHIYPTMEH 619 (838)
Q Consensus 548 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~----~~~~~~p~~~~ 619 (838)
.|..+...+...|++++|+..++++++ +.|. ...|..++.++...|+.++|.+.|+.+. ++.|+.|..++
T Consensus 69 a~~~la~~~~~~g~~~~Al~~~~~al~--~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 69 AHTAKAEAEIACGRASAVIAELEALTF--EHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHCCCchHHHHHHHHHHH--hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 344455555555555555555555555 3443 3445555555555555555555555442 23456665543
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.65 E-value=0.0024 Score=50.53 Aligned_cols=75 Identities=9% Similarity=0.076 Sum_probs=53.0
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhcCCcc----CC-CchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 046257 586 GVITACTHAGLVDEGQQYFDIMVNEHHIY----PT-MEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACR 660 (838)
Q Consensus 586 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~----p~-~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~ 660 (838)
.+...+.+.|++++|...|++..+...-. ++ ...+..+...|.+.|++++|.+.++++
T Consensus 10 ~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~a----------------- 72 (95)
T d1tjca_ 10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKL----------------- 72 (95)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHH-----------------
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHH-----------------
Confidence 34555566666666666666554321111 11 245778899999999999999999987
Q ss_pred HhccCCCCchhHHHHHHH
Q 046257 661 LISLQPHDSAIYVLLSNM 678 (838)
Q Consensus 661 ~~~l~P~~~~~y~~l~~~ 678 (838)
++++|+++.++..+..+
T Consensus 73 -L~l~P~~~~a~~Nl~~~ 89 (95)
T d1tjca_ 73 -LELDPEHQRANGNLKYF 89 (95)
T ss_dssp -HHHCTTCHHHHHHHHHH
T ss_pred -HHhCcCCHHHHHHHHHH
Confidence 89999999888777544
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.52 E-value=0.0008 Score=64.95 Aligned_cols=115 Identities=12% Similarity=0.002 Sum_probs=77.0
Q ss_pred HhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChh-HHHHHHHHHhccCCHHHHH
Q 046257 526 SKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGI-TFIGVITACTHAGLVDEGQ 601 (838)
Q Consensus 526 ~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~ 601 (838)
.+.|++++|...+++.. +.|...+..+...|+..|++++|++.|++..+ +.|+.. .+..+...+...+..+++.
T Consensus 7 L~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~--l~P~~~~~~~~l~~ll~a~~~~~~a~ 84 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIK--LFPEYLPGASQLRHLVKAAQARKDFA 84 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCGGGHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHhccccHHHH
Confidence 36799999999998765 55889999999999999999999999999999 678753 4444444443333333322
Q ss_pred HHHHHHHhcCCccCCCchHHHHHHHHHhcCCHHHHHHHHhhC
Q 046257 602 QYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDIINRM 643 (838)
Q Consensus 602 ~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~~m 643 (838)
....... ..+-.+....+......+.+.|+.++|.+.++++
T Consensus 85 ~~~~~~~-~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a 125 (264)
T d1zbpa1 85 QGAATAK-VLGENEELTKSLVSFNLSMVSQDYEQVSELALQI 125 (264)
T ss_dssp TSCCCEE-CCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHhhhhh-cccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 2111100 0000111223344456788899999999999876
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.49 E-value=0.0024 Score=56.11 Aligned_cols=103 Identities=11% Similarity=0.022 Sum_probs=72.8
Q ss_pred HHHHH--HHHHhccCCHHHHHHHHHHHHhcCCccCCC----------chHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHH
Q 046257 583 TFIGV--ITACTHAGLVDEGQQYFDIMVNEHHIYPTM----------EHYSCMVDLYSRAGMLEKAMDIINRMPFAASAT 650 (838)
Q Consensus 583 t~~~l--l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~----------~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~ 650 (838)
+|..+ .......|++++|.+.|+..+.-..-.|+. ..|+.+..+|...|++++|.+.+++.-
T Consensus 9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al------ 82 (156)
T d2hr2a1 9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKAL------ 82 (156)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhh------
Confidence 45544 445667899999999999987543333331 347778999999999999999988751
Q ss_pred HHHHHHHHHH-HhccCCC----CchhHHHHHHHHHhcCCchHHHHHHHHHhh
Q 046257 651 VWRTVLAACR-LISLQPH----DSAIYVLLSNMYAATGHWQERARVRKLMND 697 (838)
Q Consensus 651 ~w~~ll~~c~-~~~l~P~----~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~ 697 (838)
.-+. ..+..|+ ...+|..++.+|...|++++|...+++..+
T Consensus 83 ------~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 83 ------HYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp ------HHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ------hcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 1122222 223577899999999999999999998764
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.38 E-value=0.0012 Score=70.59 Aligned_cols=113 Identities=8% Similarity=-0.030 Sum_probs=51.9
Q ss_pred CChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHhcCCHHHHHH
Q 046257 560 GHTKKALEVFKEMRRQDLEFD-GITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMD 638 (838)
Q Consensus 560 g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~ 638 (838)
|.++.|+..+++... +.|+ ...+..+...+...|+.++|...+...... .| ...+.++.+++...|++++|..
T Consensus 100 ~~Y~~ai~~l~~~~~--l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~~-~~~~~~LG~l~~~~~~~~~A~~ 173 (497)
T d1ya0a1 100 GFYTQLLQELCTVFN--VDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSY---IC-QHCLVHLGDIARYRNQTSQAES 173 (497)
T ss_dssp HHHHHHHHHHTC---------------------------------CCHHHHH---HH-HHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHC--CChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCC---CH-HHHHHHHHHHHHHcccHHHHHH
Confidence 344455544444333 3443 334555555666666666666665544311 11 1345566777777777777777
Q ss_pred HHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHh
Q 046257 639 IINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMN 696 (838)
Q Consensus 639 ~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~ 696 (838)
.+++. ++++|+++.+|..|+.+|...|++.+|...+.+..
T Consensus 174 ~y~~A------------------~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral 213 (497)
T d1ya0a1 174 YYRHA------------------AQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSI 213 (497)
T ss_dssp HHHHH------------------HHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHH------------------HHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 77765 66777777777777777777777777777666554
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.16 E-value=0.0024 Score=61.49 Aligned_cols=120 Identities=10% Similarity=0.086 Sum_probs=85.1
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCC-chHHHHHHHHHhcCCHH
Q 046257 557 AQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTM-EHYSCMVDLYSRAGMLE 634 (838)
Q Consensus 557 ~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~y~~lv~~l~r~G~~~ 634 (838)
.+.|++++|++.|++.++ ..|+ ...+..+...++..|++++|.+.++...+ +.|+. ..+..+..++...+..+
T Consensus 7 L~~G~l~eAl~~l~~al~--~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~---l~P~~~~~~~~l~~ll~a~~~~~ 81 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIK--ASPKDASLRSSFIELLCIDGDFERADEQLMQSIK---LFPEYLPGASQLRHLVKAAQARK 81 (264)
T ss_dssp TTTTCHHHHHHHHHHHHH--TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHhccccH
Confidence 356999999999999999 5776 46788888999999999999999999874 34643 33444455555444444
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 046257 635 KAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMNDR 698 (838)
Q Consensus 635 ~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~~ 698 (838)
++..-..... +..+|++...+...+..+...|++++|...++...+.
T Consensus 82 ~a~~~~~~~~-----------------~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 82 DFAQGAATAK-----------------VLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp HHTTSCCCEE-----------------CCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhh-----------------cccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 4433222211 1224445566677788999999999999999988764
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.00 E-value=0.0065 Score=47.87 Aligned_cols=61 Identities=7% Similarity=-0.039 Sum_probs=49.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhcc-------CCCCchhHHHHHHHHHhcCCchHHHHH
Q 046257 619 HYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISL-------QPHDSAIYVLLSNMYAATGHWQERARV 691 (838)
Q Consensus 619 ~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l-------~P~~~~~y~~l~~~y~~~g~~~~a~~~ 691 (838)
.+-.+...+.+.|++++|.+.+++. +++ .++...+|..|+++|.+.|++++|...
T Consensus 7 dc~~lG~~~~~~g~y~~A~~~~~~A------------------l~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~ 68 (95)
T d1tjca_ 7 DSFELGKVAYTEADYYHTELWMEQA------------------LRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLL 68 (95)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH------------------HHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHH------------------HHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHH
Confidence 3445788999999999999999876 222 223356789999999999999999999
Q ss_pred HHHHhh
Q 046257 692 RKLMND 697 (838)
Q Consensus 692 ~~~m~~ 697 (838)
+++..+
T Consensus 69 y~~aL~ 74 (95)
T d1tjca_ 69 TKKLLE 74 (95)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999875
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=90.14 E-value=3.6 Score=32.63 Aligned_cols=68 Identities=16% Similarity=0.170 Sum_probs=52.7
Q ss_pred CCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHH
Q 046257 616 TMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLM 695 (838)
Q Consensus 616 ~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m 695 (838)
+.++...-+|.+..+|+-|.-.++.+.+ ++-+.-+|....-++++|.+.|...++-.++.+.
T Consensus 85 ~se~vdlALd~lv~~~kkd~Ld~i~~~l------------------~kn~~i~~~~llkia~A~kkig~~re~nell~~A 146 (161)
T d1wy6a1 85 LNEHVNKALDILVIQGKRDKLEEIGREI------------------LKNNEVSASILVAIANALRRVGDERDATTLLIEA 146 (161)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHH------------------C--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHH------------------HhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 3455566678888888877777776653 2223337888999999999999999999999999
Q ss_pred hhCCCc
Q 046257 696 NDRKVK 701 (838)
Q Consensus 696 ~~~g~~ 701 (838)
-++|+|
T Consensus 147 Ce~G~K 152 (161)
T d1wy6a1 147 CKKGEK 152 (161)
T ss_dssp HHTTCH
T ss_pred HHHhHH
Confidence 999986
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=87.93 E-value=2.5 Score=34.38 Aligned_cols=111 Identities=14% Similarity=0.001 Sum_probs=69.8
Q ss_pred ChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHc----CCChHHHH
Q 046257 260 LHMEAFETFNNMGLAGAELTRSTFVSVIKLCATTKELRLARQLHSQVLKNGIDFDHNIRTGLMVAYSK----CGKMEDAS 335 (838)
Q Consensus 260 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~----~g~~~~A~ 335 (838)
++++|+++|++..+.|-. .....+. .....+.++|.+++....+.| +......|-.+|.. ..+.++|.
T Consensus 8 d~~~A~~~~~kaa~~g~~---~a~~~l~--~~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~ 79 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNEM---FGCLSLV--SNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 79 (133)
T ss_dssp HHHHHHHHHHHHHHTTCT---THHHHHH--TCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHHCCCh---hhhhhhc--cccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHH
Confidence 456777777776665522 1122221 233456777777777777766 34444555555554 35678888
Q ss_pred HHHHhcccCCCeeehHHHHHHHHH----cCChHHHHHHHHHhhhcCC
Q 046257 336 KIFSMMREMKDVVSWTAMISGHLQ----NGAIDLAVNFFCQMTREGV 378 (838)
Q Consensus 336 ~~f~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~ 378 (838)
+.|++..+..++.+...|-..|.. ..+.++|.++|++..+.|.
T Consensus 80 ~~~~~aa~~g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 80 QYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHhhhhccCcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 888887655666666666666655 4578888888888777654
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.15 E-value=1.4 Score=35.28 Aligned_cols=75 Identities=8% Similarity=-0.017 Sum_probs=50.0
Q ss_pred CChhHHHHHHHHHhcc---CCHHHHHHHHHHHHhcCCccCC--CchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHH
Q 046257 579 FDGITFIGVITACTHA---GLVDEGQQYFDIMVNEHHIYPT--MEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWR 653 (838)
Q Consensus 579 pd~~t~~~ll~a~~~~---g~~~~a~~~~~~m~~~~~~~p~--~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~ 653 (838)
|...|-.....++.++ .++++|..+++...+. .|. .+.+--|.-+|.+.|++++|.+.++++
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~---~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~---------- 99 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE---AESRRRECLYYLTIGCYKLGEYSMAKRYVDTL---------- 99 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHH----------
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc---CchhHHHHHHHHHHHHHHHhhHHHHHHHHHHH----------
Confidence 3434444455555554 4567889999888743 232 133344667889999999999999987
Q ss_pred HHHHHHHHhccCCCCchhHHH
Q 046257 654 TVLAACRLISLQPHDSAIYVL 674 (838)
Q Consensus 654 ~ll~~c~~~~l~P~~~~~y~~ 674 (838)
++++|+|..+..+
T Consensus 100 --------L~ieP~n~qA~~L 112 (124)
T d2pqrb1 100 --------FEHERNNKQVGAL 112 (124)
T ss_dssp --------HHHCTTCHHHHHH
T ss_pred --------HccCCCcHHHHHH
Confidence 8888877755433
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=86.37 E-value=2.4 Score=34.52 Aligned_cols=76 Identities=8% Similarity=-0.053 Sum_probs=40.3
Q ss_pred CHHHHHHHHHhcC-CCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHhc----cCCHHHH
Q 046257 530 NIESASEVFKRQR-KRDLVSWNSMICGYAQ----HGHTKKALEVFKEMRRQDLEFDGITFIGVITACTH----AGLVDEG 600 (838)
Q Consensus 530 ~~~~A~~~f~~~~-~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~----~g~~~~a 600 (838)
+.++|.+.+++.. .-+......|...|.. ..+.++|+++|++..+.| +......|...+.+ ..+.++|
T Consensus 38 ~~~~a~~~~~~aa~~g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A 114 (133)
T d1klxa_ 38 NKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQA 114 (133)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred CHHHHHHHHhhhhcccchhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHH
Confidence 4455555554433 2344444444444443 335677777777777665 23333334444433 3467777
Q ss_pred HHHHHHHH
Q 046257 601 QQYFDIMV 608 (838)
Q Consensus 601 ~~~~~~m~ 608 (838)
.++|+...
T Consensus 115 ~~~~~~Aa 122 (133)
T d1klxa_ 115 VKTFEKAC 122 (133)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77777765
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=84.98 E-value=7.7 Score=30.69 Aligned_cols=64 Identities=17% Similarity=0.059 Sum_probs=46.4
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHhCC
Q 046257 247 TWNSMVAGYVTNELHMEAFETFNNMGLAGAELTRSTFVSVIKLCATTKELRLARQLHSQVLKNGI 311 (838)
Q Consensus 247 ~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~ 311 (838)
-.+.-++..+++|+-++-.++++.+.+ +-+|++.....+..+|.+.|+..++.+++.+.-+.|+
T Consensus 88 ~vdlALd~lv~~~kkd~Ld~i~~~l~k-n~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~ 151 (161)
T d1wy6a1 88 HVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 151 (161)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence 345566777888888887788777665 3467777777777888888888888888877777764
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.16 E-value=2.6 Score=33.62 Aligned_cols=65 Identities=8% Similarity=-0.020 Sum_probs=49.3
Q ss_pred CCCchHHHHHHHHHhcCC---HHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCc-hhHHHHHHHHHhcCCchHHHH
Q 046257 615 PTMEHYSCMVDLYSRAGM---LEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDS-AIYVLLSNMYAATGHWQERAR 690 (838)
Q Consensus 615 p~~~~y~~lv~~l~r~G~---~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~-~~y~~l~~~y~~~g~~~~a~~ 690 (838)
|++.+--.+..++.+... +++|..++++. +..+|.+. ..+..|+-+|.+.|++++|.+
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~------------------~~~~p~~~rd~lY~Lav~yyklgdy~~A~~ 94 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDI------------------YKEAESRRRECLYYLTIGCYKLGEYSMAKR 94 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH------------------HHHCGGGHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHH------------------HhcCchhHHHHHHHHHHHHHHHhhHHHHHH
Confidence 444454556677876654 56788888765 55677664 677899999999999999999
Q ss_pred HHHHHhh
Q 046257 691 VRKLMND 697 (838)
Q Consensus 691 ~~~~m~~ 697 (838)
.++...+
T Consensus 95 ~~~~~L~ 101 (124)
T d2pqrb1 95 YVDTLFE 101 (124)
T ss_dssp HHHHHHH
T ss_pred HHHHHHc
Confidence 9999876
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=82.67 E-value=25 Score=34.91 Aligned_cols=180 Identities=8% Similarity=-0.000 Sum_probs=100.2
Q ss_pred HHHHHccCChHHHHHHHHHHHHcCCCCCcccHHHHHHHhcc--CCChhhHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhC
Q 046257 50 LFEYCRDSLHQEALNLFLGIRRLGLPLFGSTLSSVLKTCGC--LFDHVFGRQVHCECVKSGFAR-DVNVSTSLVDLYMRT 126 (838)
Q Consensus 50 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~g~~~-~~~~~~~li~~y~~~ 126 (838)
+....+.|+..++..+...+. ..+. ..|...-..-.. ..... ++...+.+..-.| .......-+..+.+.
T Consensus 13 a~~a~~~~~~~~~~~~~~~L~--dypL--~pYl~~~~l~~~~~~~~~~---~i~~Fl~~~p~~P~~~~lr~~~l~~L~~~ 85 (450)
T d1qsaa1 13 IKQAWDNRQMDVVEQMMPGLK--DYPL--YPYLEYRQITDDLMNQPAV---TVTNFVRANPTLPPARTLQSRFVNELARR 85 (450)
T ss_dssp HHHHHHTTCHHHHHHHSGGGT--TSTT--HHHHHHHHHHHTGGGCCHH---HHHHHHHHCTTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHhhhc--CCCC--HHHHHHHHHHhccccCCHH---HHHHHHHHCCCChhHHHHHHHHHHHHHhc
Confidence 344567788888777766653 2221 222222211112 22332 3333333321111 112233445677888
Q ss_pred CChHHHHHHHccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCC-CCChhhHHHHHHHHhcCCChHHHHHHHHHH
Q 046257 127 NNVEDGRRVFDDMNESNVVSWTSLLSGYARNKMNDRVLELFHRMQVEGI-KPNSFTFSTVLGVLADEGIVATAVQVHTMV 205 (838)
Q Consensus 127 g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~~~~~~g~~~~a~~l~~~~ 205 (838)
++++.....+..-+ .+...--....+..+.|+..+|...+...-..|. .|+ ....++...
T Consensus 86 ~~w~~~~~~~~~~p-~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~~p~------------------~c~~l~~~~ 146 (450)
T d1qsaa1 86 EDWRGLLAFSPEKP-GTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPN------------------ACDKLFSVW 146 (450)
T ss_dssp TCHHHHHHHCCSCC-SSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCT------------------HHHHHHHHH
T ss_pred cCHHHHHHhccCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCch------------------HHHHHHHHH
Confidence 99888777665432 2444445667778889999999888887765542 222 223344444
Q ss_pred HHhCCCCchhHHHHHHHHhHcCCChhHHHHHHhcCCCCCcchHHHHHHHHH
Q 046257 206 IKNGGEVVTSVCNALISMYLKSKMVRDARAVFDGMEDRDSITWNSMVAGYV 256 (838)
Q Consensus 206 ~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~ 256 (838)
.+.| ..+...+-.-+......|+...|..+...++.......+..+...-
T Consensus 147 ~~~~-~lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~ 196 (450)
T d1qsaa1 147 RASG-KQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLAN 196 (450)
T ss_dssp HHTT-CSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHH
T ss_pred HhcC-CCCHHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHh
Confidence 4544 3444444455666677789999999998887655555555555543
|