Citrus Sinensis ID: 046312
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 514 | 2.2.26 [Sep-21-2011] | |||||||
| Q9ZQA1 | 501 | Pentatricopeptide repeat- | yes | no | 0.935 | 0.960 | 0.577 | 1e-163 | |
| A8MQA3 | 595 | Pentatricopeptide repeat- | no | no | 0.933 | 0.806 | 0.353 | 9e-84 | |
| Q0WQW5 | 638 | Pentatricopeptide repeat- | no | no | 0.978 | 0.788 | 0.365 | 3e-82 | |
| Q8LK93 | 603 | Pentatricopeptide repeat- | no | no | 0.912 | 0.777 | 0.353 | 4e-81 | |
| Q9FI80 | 646 | Pentatricopeptide repeat- | no | no | 0.916 | 0.729 | 0.347 | 2e-80 | |
| P93011 | 583 | Pentatricopeptide repeat- | no | no | 0.883 | 0.778 | 0.366 | 8e-80 | |
| Q3E6Q1 | 809 | Pentatricopeptide repeat- | no | no | 0.892 | 0.567 | 0.367 | 2e-79 | |
| Q9SX45 | 596 | Pentatricopeptide repeat- | no | no | 0.951 | 0.820 | 0.350 | 1e-77 | |
| Q9FJY7 | 620 | Pentatricopeptide repeat- | no | no | 0.928 | 0.769 | 0.322 | 4e-76 | |
| Q9ZVF4 | 584 | Pentatricopeptide repeat- | no | no | 0.918 | 0.808 | 0.352 | 3e-75 |
| >sp|Q9ZQA1|PP188_ARATH Pentatricopeptide repeat-containing protein At2g36730 OS=Arabidopsis thaliana GN=PCMP-E44 PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 574 bits (1480), Expect = e-163, Method: Compositional matrix adjust.
Identities = 280/485 (57%), Positives = 352/485 (72%), Gaps = 4/485 (0%)
Query: 26 SKARQCLSFLKLCCSKKHLYQIHAQIQVSGLQNDAQILKELVRFCTLSSSKNLTYARSIL 85
S+ QCL FLKLC S KHL QIH QI +S LQND+ I+ ELVR +LS +K+L +AR++L
Sbjct: 11 SRKHQCLIFLKLCSSIKHLLQIHGQIHLSSLQNDSFIISELVRVSSLSLAKDLAFARTLL 70
Query: 86 CNYVNDSVPIPWNNLIRGYAWSDRPREAVWVFIDMKRRGIKPTEFTYPFVLKACAEISGL 145
+ +DS P WN L RGY+ SD P E++WV+ +MKRRGIKP + T+PF+LKACA GL
Sbjct: 71 L-HSSDSTPSTWNMLSRGYSSSDSPVESIWVYSEMKRRGIKPNKLTFPFLLKACASFLGL 129
Query: 146 NEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKRDACKVFDDMCERSVVSWNVIITVC 205
G Q+Q V K G D DVY NNL+ YG+C++ DA KVFD+M ER+VVSWN I+T
Sbjct: 130 TAGRQIQVEVLKHGFDFDVYVGNNLIHLYGTCKKTSDARKVFDEMTERNVVSWNSIMTAL 189
Query: 206 VENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNC 265
VEN L F +M F PDETTM+V+LSAC GNLSLGK VH Q++ R LNC
Sbjct: 190 VENGKLNLVFECFCEMIGKRFCPDETTMVVLLSACG--GNLSLGKLVHSQVMVRELELNC 247
Query: 266 QLGTALIDMYAKCGAVGCARLLFSRMEEINVWTWSAMILGLAQHGYAEEALELFSNM-KN 324
+LGTAL+DMYAK G + ARL+F RM + NVWTWSAMI+GLAQ+G+AEEAL+LFS M K
Sbjct: 248 RLGTALVDMYAKSGGLEYARLVFERMVDKNVWTWSAMIVGLAQYGFAEEALQLFSKMMKE 307
Query: 325 SSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLK 384
SS+ PNYVTFLGVLCAC+H G+V+DGY+YFHEME +H IKPM IHY M DIL RAG L
Sbjct: 308 SSVRPNYVTFLGVLCACSHTGLVDDGYKYFHEMEKIHKIKPMMIHYGAMVDILGRAGRLN 367
Query: 385 EAYTFIMNMPFQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVAN 444
EAY FI MPF+P+ +V R LLSA SIH + +G+G +V++RL+ELEP+ S NLVIVAN
Sbjct: 368 EAYDFIKKMPFEPDAVVWRTLLSACSIHHDEDDEGIGEKVKKRLIELEPKRSGNLVIVAN 427
Query: 445 KYAEVGMWEKVSNVRRFMKNVGLKKMKGMSWVELGGSIHRFYSGYDSQVELAGIYQILET 504
++AE MW + + VRR MK +KK+ G S +ELGGS HRF+SGYD + E IY++L+
Sbjct: 428 RFAEARMWAEAAEVRRVMKETKMKKIAGESCLELGGSFHRFFSGYDPRSEYVSIYELLDL 487
Query: 505 LNLHM 509
+
Sbjct: 488 FKFQL 492
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|A8MQA3|PP330_ARATH Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana GN=PCMP-H28 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 311 bits (796), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 173/489 (35%), Positives = 276/489 (56%), Gaps = 9/489 (1%)
Query: 24 LLSKARQCLSFLKL--CCSKKHLYQIHAQIQVSGLQ-NDAQILKELVRF-CTLSSSKNLT 79
LL +C++ L+ S L QIHA G+ +DA++ K L+ + +L S ++
Sbjct: 11 LLPMVEKCINLLQTYGVSSITKLRQIHAFSIRHGVSISDAELGKHLIFYLVSLPSPPPMS 70
Query: 80 YARSILCNYVNDSVPIPWNNLIRGYAWSDRPREAVWVFIDMKRRG-IKPTEFTYPFVLKA 138
YA + WN LIRGYA A ++ +M+ G ++P TYPF++KA
Sbjct: 71 YAHKVFSKIEKPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKA 130
Query: 139 CAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKRDACKVFDDMCERSVVSW 198
++ + G + + V +SG S +Y N+L+ Y +C A KVFD M E+ +V+W
Sbjct: 131 VTTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAW 190
Query: 199 NVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIE 258
N +I EN EA+ + +M G +PD T++ +LSAC ++G L+LGK VH+ +I+
Sbjct: 191 NSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIK 250
Query: 259 RGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEEINVWTWSAMILGLAQHGYAEEALEL 318
G N L+D+YA+CG V A+ LF M + N +W+++I+GLA +G+ +EA+EL
Sbjct: 251 VGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIEL 310
Query: 319 FSNMKNSS-ISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADIL 377
F M+++ + P +TF+G+L AC+H GMV++G+ YF M + I+P H+ M D+L
Sbjct: 311 FKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLL 370
Query: 378 ARAGHLKEAYTFIMNMPFQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQ 437
ARAG +K+AY +I +MP QPN ++ R LL A ++H + R ++L+LEP S
Sbjct: 371 ARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHG---DSDLAEFARIQILQLEPNHSG 427
Query: 438 NLVIVANKYAEVGMWEKVSNVRRFMKNVGLKKMKGMSWVELGGSIHRFYSGYDSQVELAG 497
+ V+++N YA W V +R+ M G+KK+ G S VE+G +H F G S +
Sbjct: 428 DYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEVGNRVHEFLMGDKSHPQSDA 487
Query: 498 IYQILETLN 506
IY L+ +
Sbjct: 488 IYAKLKEMT 496
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WQW5|PPR85_ARATH Pentatricopeptide repeat-containing protein At1g59720, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H51 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 306 bits (784), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 191/523 (36%), Positives = 277/523 (52%), Gaps = 20/523 (3%)
Query: 7 PTTNHIFPPKPSNCNSDLLSKARQCLSFLKLCCSKKHLYQIHAQIQVSGLQNDAQILKEL 66
P + HI PP S S + ++ S + C L Q+HA + + L
Sbjct: 28 PLSPHI-PPASSPSASTAGNHHQRIFSLAETCSDMSQLKQLHAFTLRTTYPEEPATLFLY 86
Query: 67 VRFCTLSSS-KNLTYARSILCNYVNDSVPIPWNNLIRGYAWS-DRPREAVWVFIDMKRRG 124
+ LSSS ++ YA + + N S WN LIR A R EA ++ M RG
Sbjct: 87 GKILQLSSSFSDVNYAFRVFDSIENHS-SFMWNTLIRACAHDVSRKEEAFMLYRKMLERG 145
Query: 125 -IKPTEFTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKRDA 183
P + T+PFVLKACA I G +EG QV + K G DVY NN L+ YGSC A
Sbjct: 146 ESSPDKHTFPFVLKACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLA 205
Query: 184 CKVFDDMCERSVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTEL 243
KVFD+M ERS+VSWN +I V A+ F +M+ FEPD TM VLSAC L
Sbjct: 206 RKVFDEMPERSLVSWNSMIDALVRFGEYDSALQLFREMQR-SFEPDGYTMQSVLSACAGL 264
Query: 244 GNLSLGKWVHLQLIERGTV---LNCQLGTALIDMYAKCGAVGCARLLFSRMEEINVWTWS 300
G+LSLG W H L+ + V ++ + +LI+MY KCG++ A +F M++ ++ +W+
Sbjct: 265 GSLSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWN 324
Query: 301 AMILGLAQHGYAEEALELFSNM--KNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEME 358
AMILG A HG AEEA+ F M K ++ PN VTF+G+L ACNH G V G +YF M
Sbjct: 325 AMILGFATHGRAEEAMNFFDRMVDKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMV 384
Query: 359 HVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMPFQPNPIVLRALLSASSIHDAKYQD 418
+ I+P HY + D++ARAG++ EA +M+MP +P+ ++ R+LL A A +
Sbjct: 385 RDYCIEPALEHYGCIVDLIARAGYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVE- 443
Query: 419 GVGNEVRRRLLEL-EPRGSQN------LVIVANKYAEVGMWEKVSNVRRFMKNVGLKKMK 471
+ E+ R ++ E S N V+++ YA W V VR+ M G++K
Sbjct: 444 -LSEEIARNIIGTKEDNESSNGNCSGAYVLLSRVYASASRWNDVGIVRKLMSEHGIRKEP 502
Query: 472 GMSWVELGGSIHRFYSGYDSQVELAGIYQILETLNLHMKVLNF 514
G S +E+ G H F++G S + IYQ L+ ++ ++ + +
Sbjct: 503 GCSSIEINGISHEFFAGDTSHPQTKQIYQQLKVIDDRLRSIGY 545
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8LK93|PP145_ARATH Pentatricopeptide repeat-containing protein At2g02980 OS=Arabidopsis thaliana GN=PCMP-H26 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 302 bits (774), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 168/475 (35%), Positives = 267/475 (56%), Gaps = 6/475 (1%)
Query: 38 CCSKKHLYQIHAQIQVSGLQNDAQILKELVRFCTLSSSKN-LTYARSILCNYVNDSVPIP 96
C S + L QI A S ++ D + +L+ FCT S +++ ++YAR + + I
Sbjct: 39 CNSLRELMQIQAYAIKSHIE-DVSFVAKLINFCTESPTESSMSYARHLFEAMSEPDIVI- 96
Query: 97 WNNLIRGYAWSDRPREAVWVFIDMKRRGIKPTEFTYPFVLKACAEISGLNEGMQVQANVT 156
+N++ RGY+ P E +F+++ GI P +T+P +LKACA L EG Q+
Sbjct: 97 FNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLLKACAVAKALEEGRQLHCLSM 156
Query: 157 KSGLDSDVYTNNNLVRFYGSCRRKRDACKVFDDMCERSVVSWNVIITVCVENLWLGEAVG 216
K GLD +VY L+ Y C A VFD + E VV +N +IT EA+
Sbjct: 157 KLGLDDNVYVCPTLINMYTECEDVDSARCVFDRIVEPCVVCYNAMITGYARRNRPNEALS 216
Query: 217 YFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYA 276
F +M+ +P+E T+L VLS+C LG+L LGKW+H + ++ TALIDM+A
Sbjct: 217 LFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKWIHKYAKKHSFCKYVKVNTALIDMFA 276
Query: 277 KCGAVGCARLLFSRMEEINVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLG 336
KCG++ A +F +M + WSAMI+ A HG AE+++ +F M++ ++ P+ +TFLG
Sbjct: 277 KCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKSMLMFERMRSENVQPDEITFLG 336
Query: 337 VLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMPFQ 396
+L AC+H G VE+G +YF +M GI P HY +M D+L+RAG+L++AY FI +P
Sbjct: 337 LLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKHYGSMVDLLSRAGNLEDAYEFIDKLPIS 396
Query: 397 PNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVS 456
P P++ R LL+A S H+ + +V R+ EL+ + VI++N YA WE V
Sbjct: 397 PTPMLWRILLAACSSHN---NLDLAEKVSERIFELDDSHGGDYVILSNLYARNKKWEYVD 453
Query: 457 NVRRFMKNVGLKKMKGMSWVELGGSIHRFYSGYDSQVELAGIYQILETLNLHMKV 511
++R+ MK+ K+ G S +E+ +H F+SG + +++ L+ + +K+
Sbjct: 454 SLRKVMKDRKAVKVPGCSSIEVNNVVHEFFSGDGVKSATTKLHRALDEMVKELKL 508
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FI80|PP425_ARATH Pentatricopeptide repeat-containing protein At5g48910 OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 300 bits (767), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 184/529 (34%), Positives = 274/529 (51%), Gaps = 58/529 (10%)
Query: 38 CCSKKHLYQIHAQIQVSGLQNDAQILKELVRFCTLSS--SKNLTYARSILCNYVNDSVPI 95
C + + L QIHA SG D E++RFC S ++L YA I N +
Sbjct: 33 CRTIRDLSQIHAVFIKSGQMRDTLAAAEILRFCATSDLHHRDLDYAHKIF-NQMPQRNCF 91
Query: 96 PWNNLIRGYAWSDRPRE--AVWVFIDM-KRRGIKPTEFTYPFVLKACAEISGLNEGMQVQ 152
WN +IRG++ SD + A+ +F +M ++P FT+P VLKACA+ + EG Q+
Sbjct: 92 SWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKACAKTGKIQEGKQIH 151
Query: 153 ANVTKSGLDSDVYTNNNLVRFYGSC------------------------RRKRDA----- 183
K G D + +NLVR Y C RRKRD
Sbjct: 152 GLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMTDRRKRDGEIVLW 211
Query: 184 ------------CK----VFDDMCERSVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFE 227
CK +FD M +RSVVSWN +I+ N + +AV F +MK
Sbjct: 212 NVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMKKGDIR 271
Query: 228 PDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLL 287
P+ T++ VL A + LG+L LG+W+HL + G ++ LG+ALIDMY+KCG + A +
Sbjct: 272 PNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIHV 331
Query: 288 FSRMEEINVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMV 347
F R+ NV TWSAMI G A HG A +A++ F M+ + + P+ V ++ +L AC+H G+V
Sbjct: 332 FERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHGGLV 391
Query: 348 EDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMPFQPNPIVLRALLS 407
E+G RYF +M V G++P HY M D+L R+G L EA FI+NMP +P+ ++ +ALL
Sbjct: 392 EEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKPDDVIWKALLG 451
Query: 408 ASSIHDAKYQDGV--GNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNV 465
A + Q V G V L+++ P S V ++N YA G W +VS +R MK
Sbjct: 452 A-----CRMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSEMRLRMKEK 506
Query: 466 GLKKMKGMSWVELGGSIHRFYSGYDSQVELAGIYQILETLNLHMKVLNF 514
++K G S +++ G +H F DS + I +L ++ +++ +
Sbjct: 507 DIRKDPGCSLIDIDGVLHEFVVEDDSHPKAKEINSMLVEISDKLRLAGY 555
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|P93011|PP182_ARATH Pentatricopeptide repeat-containing protein At2g33760 OS=Arabidopsis thaliana GN=PCMP-H6 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 298 bits (762), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 173/472 (36%), Positives = 260/472 (55%), Gaps = 18/472 (3%)
Query: 42 KHLYQIHAQIQVSGLQNDAQILKELVRFCTLSSSKNLTYARSILCNYVNDSVPIP----W 97
K L Q+HA + V+G +L +L+ S++ + Y + SVP+P +
Sbjct: 23 KQLQQVHAHLIVTGYGRSRSLLTKLITLAC--SARAIAYTHLLFL-----SVPLPDDFLF 75
Query: 98 NNLIRGYAWSDRPREAVWVFIDMKRRGIKPTEFTYPFVLKACAEISGLNEGMQVQANVTK 157
N++I+ + P V + M + P+ +T+ V+K+CA++S L G V +
Sbjct: 76 NSVIKSTSKLRLPLHCVAYYRRMLSSNVSPSNYTFTSVIKSCADLSALRIGKGVHCHAVV 135
Query: 158 SGLDSDVYTNNNLVRFYGSCRRKRDACKVFDDMCERSVVSWNVIITVCVENLWLGEAVGY 217
SG D Y LV FY C A +VFD M E+S+V+WN +++ +N EA+
Sbjct: 136 SGFGLDTYVQAALVTFYSKCGDMEGARQVFDRMPEKSIVAWNSLVSGFEQNGLADEAIQV 195
Query: 218 FVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAK 277
F +M++ GFEPD T + +LSAC + G +SLG WVH +I G LN +LGTALI++Y++
Sbjct: 196 FYQMRESGFEPDSATFVSLLSACAQTGAVSLGSWVHQYIISEGLDLNVKLGTALINLYSR 255
Query: 278 CGAVGCARLLFSRMEEINVWTWSAMILGLAQHGYAEEALELFSNMKNS-SISPNYVTFLG 336
CG VG AR +F +M+E NV W+AMI HGY ++A+ELF+ M++ PN VTF+
Sbjct: 256 CGDVGKAREVFDKMKETNVAAWTAMISAYGTHGYGQQAVELFNKMEDDCGPIPNNVTFVA 315
Query: 337 VLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMPFQ 396
VL AC HAG+VE+G + M + + P H+ M D+L RAG L EAY FI +
Sbjct: 316 VLSACAHAGLVEEGRSVYKRMTKSYRLIPGVEHHVCMVDMLGRAGFLDEAYKFIHQLDAT 375
Query: 397 PN---PIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWE 453
P + A+L A +H Y GV E+ +RL+ LEP + V+++N YA G +
Sbjct: 376 GKATAPALWTAMLGACKMHR-NYDLGV--EIAKRLIALEPDNPGHHVMLSNIYALSGKTD 432
Query: 454 KVSNVRRFMKNVGLKKMKGMSWVELGGSIHRFYSGYDSQVELAGIYQILETL 505
+VS++R M L+K G S +E+ + F G +S E IY+ LETL
Sbjct: 433 EVSHIRDGMMRNNLRKQVGYSVIEVENKTYMFSMGDESHQETGEIYRYLETL 484
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290 OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 296 bits (759), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 171/465 (36%), Positives = 245/465 (52%), Gaps = 6/465 (1%)
Query: 46 QIHAQIQVSGLQNDAQILKELVRFCTLSSSKNLTYARSILCNYVNDSVPIPWNNLIRGYA 105
+IH SG + I LV S L AR + + +V + WN++I Y
Sbjct: 257 EIHGYAMRSGFDSLVNISTALVDMYAKCGS--LETARQLFDGMLERNV-VSWNSMIDAYV 313
Query: 106 WSDRPREAVWVFIDMKRRGIKPTEFTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVY 165
++ P+EA+ +F M G+KPT+ + L ACA++ L G + + GLD +V
Sbjct: 314 QNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNVS 373
Query: 166 TNNNLVRFYGSCRRKRDACKVFDDMCERSVVSWNVIITVCVENLWLGEAVGYFVKMKDLG 225
N+L+ Y C+ A +F + R++VSWN +I +N +A+ YF +M+
Sbjct: 374 VVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRT 433
Query: 226 FEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCAR 285
+PD T + V++A EL KW+H ++ N + TAL+DMYAKCGA+ AR
Sbjct: 434 VKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIAR 493
Query: 286 LLFSRMEEINVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAG 345
L+F M E +V TW+AMI G HG+ + ALELF M+ +I PN VTFL V+ AC+H+G
Sbjct: 494 LIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACSHSG 553
Query: 346 MVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMPFQPNPIVLRAL 405
+VE G + F+ M+ + I+ HY M D+L RAG L EA+ FIM MP +P V A+
Sbjct: 554 LVEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAM 613
Query: 406 LSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNV 465
L A IH + RL EL P V++AN Y MWEKV VR M
Sbjct: 614 LGACQIHK---NVNFAEKAAERLFELNPDDGGYHVLLANIYRAASMWEKVGQVRVSMLRQ 670
Query: 466 GLKKMKGMSWVELGGSIHRFYSGYDSQVELAGIYQILETLNLHMK 510
GL+K G S VE+ +H F+SG + + IY LE L H+K
Sbjct: 671 GLRKTPGCSMVEIKNEVHSFFSGSTAHPDSKKIYAFLEKLICHIK 715
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SX45|PPR75_ARATH Pentatricopeptide repeat-containing protein At1g50270 OS=Arabidopsis thaliana GN=PCMP-E42 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 291 bits (744), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 180/513 (35%), Positives = 271/513 (52%), Gaps = 24/513 (4%)
Query: 1 MVRFPVPTTNHIFPPKPSNCNSDLLSKARQCLSFLKLCCSKKHLYQIHAQIQVSGLQNDA 60
M R V + H FPP L KA KL S +Q HA I GL +D
Sbjct: 95 MRRNGVIPSRHTFPP---------LLKA-----VFKLRDSNP--FQFHAHIVKFGLDSDP 138
Query: 61 QILKELVRFCTLSSSKNLTYARSILCNYVNDSVPIPWNNLIRGYAWSDRPREAVWVFIDM 120
+ L+ SSS +A S L + D + W +I G+ + EA+ F++M
Sbjct: 139 FVRNSLI--SGYSSSGLFDFA-SRLFDGAEDKDVVTWTAMIDGFVRNGSASEAMVYFVEM 195
Query: 121 KRRGIKPTEFTYPFVLKACAEISGLNEGMQVQANVTKSG-LDSDVYTNNNLVRFYGSCRR 179
K+ G+ E T VLKA ++ + G V ++G + DV+ ++LV YG C
Sbjct: 196 KKTGVAANEMTVVSVLKAAGKVEDVRFGRSVHGLYLETGRVKCDVFIGSSLVDMYGKCSC 255
Query: 180 KRDACKVFDDMCERSVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSA 239
DA KVFD+M R+VV+W +I V++ + + F +M P+E T+ VLSA
Sbjct: 256 YDDAQKVFDEMPSRNVVTWTALIAGYVQSRCFDKGMLVFEEMLKSDVAPNEKTLSSVLSA 315
Query: 240 CTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEEINVWTW 299
C +G L G+ VH +I+ +N GT LID+Y KCG + A L+F R+ E NV+TW
Sbjct: 316 CAHVGALHRGRRVHCYMIKNSIEINTTAGTTLIDLYVKCGCLEEAILVFERLHEKNVYTW 375
Query: 300 SAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEH 359
+AMI G A HGYA +A +LF M +S +SPN VTF+ VL AC H G+VE+G R F M+
Sbjct: 376 TAMINGFAAHGYARDAFDLFYTMLSSHVSPNEVTFMAVLSACAHGGLVEEGRRLFLSMKG 435
Query: 360 VHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMPFQPNPIVLRALLSASSIHDAKYQDG 419
++P HY M D+ R G L+EA I MP +P +V AL + +H Y+
Sbjct: 436 RFNMEPKADHYACMVDLFGRKGLLEEAKALIERMPMEPTNVVWGALFGSCLLH-KDYE-- 492
Query: 420 VGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNVGLKKMKGMSWVELG 479
+G R+++L+P S ++AN Y+E W++V+ VR+ MK+ + K G SW+E+
Sbjct: 493 LGKYAASRVIKLQPSHSGRYTLLANLYSESQNWDEVARVRKQMKDQQVVKSPGFSWIEVK 552
Query: 480 GSIHRFYSGYDSQ-VELAGIYQILETLNLHMKV 511
G + F + D + +E +Y+ L+T+ + M++
Sbjct: 553 GKLCEFIAFDDKKPLESDDLYKTLDTVGVQMRL 585
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FJY7|PP449_ARATH Pentatricopeptide repeat-containing protein At5g66520 OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 286 bits (731), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 165/511 (32%), Positives = 259/511 (50%), Gaps = 34/511 (6%)
Query: 19 NCNSDLLSKARQCLSFLKLCCSKKHLYQIHAQIQVSGLQNDAQILKELVRFCTLSSSKNL 78
+C+ L + +S L+ C ++ L QIHA++ +GL D+ + + + FC S+S +
Sbjct: 5 SCSFSLEHNLYETMSCLQRCSKQEELKQIHARMLKTGLMQDSYAITKFLSFCISSTSSDF 64
Query: 79 TYARSILCNYVNDSVPIPWNNLIRGYAWSDRPREAVWVFIDMKRRGIKPTEFTYPFVLKA 138
I+ + + WN +IRG++ SD P ++ ++ M +T+P +LKA
Sbjct: 65 LPYAQIVFDGFDRPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKA 124
Query: 139 CAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKRDACKVFD---------- 188
C+ +S E Q+ A +TK G ++DVY N+L+ Y + A +FD
Sbjct: 125 CSNLSAFEETTQIHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSW 184
Query: 189 ---------------------DMCERSVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFE 227
M E++ +SW +I+ V+ EA+ F +M++ E
Sbjct: 185 NSVIKGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVE 244
Query: 228 PDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLL 287
PD ++ LSAC +LG L GKW+H L + ++ LG LIDMYAKCG + A +
Sbjct: 245 PDNVSLANALSACAQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEV 304
Query: 288 FSRMEEINVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMV 347
F +++ +V W+A+I G A HG+ EA+ F M+ I PN +TF VL AC++ G+V
Sbjct: 305 FKNIKKKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLV 364
Query: 348 EDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMPFQPNPIVLRALLS 407
E+G F+ ME + +KP HY + D+L RAG L EA FI MP +PN ++ ALL
Sbjct: 365 EEGKLIFYSMERDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALLK 424
Query: 408 ASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNVGL 467
A IH +G E+ L+ ++P V AN +A W+K + RR MK G+
Sbjct: 425 ACRIHK---NIELGEEIGEILIAIDPYHGGRYVHKANIHAMDKKWDKAAETRRLMKEQGV 481
Query: 468 KKMKGMSWVELGGSIHRFYSGYDSQVELAGI 498
K+ G S + L G+ H F +G S E+ I
Sbjct: 482 AKVPGCSTISLEGTTHEFLAGDRSHPEIEKI 512
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9ZVF4|PP140_ARATH Pentatricopeptide repeat-containing protein At2g01510, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H37 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 283 bits (724), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 170/482 (35%), Positives = 262/482 (54%), Gaps = 10/482 (2%)
Query: 28 ARQCLS-FLKLCCSK-KHLYQIHAQIQVSGLQNDAQILKELVRFCTLSSSKNLTYARSIL 85
+Q LS L+ SK K L +IHA + +G +L +L+ L ++ YAR +
Sbjct: 9 TKQMLSELLRASSSKPKQLKKIHAIVLRTGFSEKNSLLTQLLE--NLVVIGDMCYARQVF 66
Query: 86 CNYVNDSVPIPWNNLIRGYAWSDRPREAVWVFIDMKRRGIKPTEFTYPFVLKACAEISGL 145
+ ++ WN L +GY + P E++ ++ M+ G++P EFTYPFV+KA +++
Sbjct: 67 -DEMHKPRIFLWNTLFKGYVRNQLPFESLLLYKKMRDLGVRPDEFTYPFVVKAISQLGDF 125
Query: 146 NEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKRDACKVFDDMCERSVVSWNVIITVC 205
+ G + A+V K G LV Y A +F+ M + +V+WN + VC
Sbjct: 126 SCGFALHAHVVKYGFGCLGIVATELVMMYMKFGELSSAEFLFESMQVKDLVAWNAFLAVC 185
Query: 206 VENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNC 265
V+ A+ YF KM + D T++ +LSAC +LG+L +G+ ++ + + N
Sbjct: 186 VQTGNSAIALEYFNKMCADAVQFDSFTVVSMLSACGQLGSLEIGEEIYDRARKEEIDCNI 245
Query: 266 QLGTALIDMYAKCGAVGCARLLFSRMEEINVWTWSAMILGLAQHGYAEEALELFSNMKNS 325
+ A +DM+ KCG AR+LF M++ NV +WS MI+G A +G + EAL LF+ M+N
Sbjct: 246 IVENARLDMHLKCGNTEAARVLFEEMKQRNVVSWSTMIVGYAMNGDSREALTLFTTMQNE 305
Query: 326 SISPNYVTFLGVLCACNHAGMVEDGYRYFHEM--EHVHGIKPMRIHYHTMADILARAGHL 383
+ PNYVTFLGVL AC+HAG+V +G RYF M + ++P + HY M D+L R+G L
Sbjct: 306 GLRPNYVTFLGVLSACSHAGLVNEGKRYFSLMVQSNDKNLEPRKEHYACMVDLLGRSGLL 365
Query: 384 KEAYTFIMNMPFQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVA 443
+EAY FI MP +P+ + ALL A ++H +G +V L+E P V+++
Sbjct: 366 EEAYEFIKKMPVEPDTGIWGALLGACAVHRDMI---LGQKVADVLVETAPDIGSYHVLLS 422
Query: 444 NKYAEVGMWEKVSNVRRFMKNVGLKKMKGMSWVELGGSIHRFYSGYDSQVELAGIYQILE 503
N YA G W+ V VR M+ +G KK+ S VE G IH F G S + IY+ L+
Sbjct: 423 NIYAAAGKWDCVDKVRSKMRKLGTKKVAAYSSVEFEGKIHFFNRGDKSHPQSKAIYEKLD 482
Query: 504 TL 505
+
Sbjct: 483 EI 484
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 514 | ||||||
| 255582129 | 1157 | Cell division protein ftsH, putative [Ri | 0.935 | 0.415 | 0.648 | 0.0 | |
| 147852347 | 505 | hypothetical protein VITISV_032528 [Viti | 0.978 | 0.996 | 0.590 | 0.0 | |
| 224141397 | 505 | predicted protein [Populus trichocarpa] | 0.976 | 0.994 | 0.616 | 1e-179 | |
| 359488917 | 1146 | PREDICTED: ATP-dependent zinc metallopro | 0.945 | 0.424 | 0.585 | 1e-175 | |
| 449519932 | 516 | PREDICTED: pentatricopeptide repeat-cont | 1.0 | 0.996 | 0.563 | 1e-171 | |
| 357487485 | 498 | Pentatricopeptide repeat-containing prot | 0.951 | 0.981 | 0.577 | 1e-171 | |
| 356567046 | 505 | PREDICTED: pentatricopeptide repeat-cont | 0.949 | 0.966 | 0.595 | 1e-171 | |
| 449461643 | 516 | PREDICTED: pentatricopeptide repeat-cont | 1.0 | 0.996 | 0.562 | 1e-170 | |
| 297827165 | 507 | pentatricopeptide repeat-containing prot | 0.953 | 0.966 | 0.572 | 1e-162 | |
| 15228026 | 501 | pentatricopeptide repeat-containing prot | 0.935 | 0.960 | 0.577 | 1e-161 |
| >gi|255582129|ref|XP_002531859.1| Cell division protein ftsH, putative [Ricinus communis] gi|223528509|gb|EEF30537.1| Cell division protein ftsH, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 662 bits (1709), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 313/483 (64%), Positives = 381/483 (78%), Gaps = 2/483 (0%)
Query: 31 CLSFLKLCCSKKHLYQIHAQIQVSGLQNDAQILKELVRFCTLSSSKNLTYARSILCNYVN 90
CLS LKLC S KHLYQIH+QIQVSGLQ D ++ +L++F +LS SK+L+YA+SIL + V+
Sbjct: 667 CLSLLKLCSSIKHLYQIHSQIQVSGLQGDTFLVTQLIKFSSLSPSKDLSYAQSILDHSVH 726
Query: 91 DSVPIPWNNLIRGYAWSDRPREAVWVFIDMKRRGIKPTEFTYPFVLKACAEISGLNEGMQ 150
VP+PWN LIRGYA S+ P++A++V+ +M+ GI+P T+PF+LKACA EG Q
Sbjct: 727 -PVPLPWNILIRGYADSNTPKDALFVYRNMRNEGIRPNSLTFPFLLKACAACFATKEGKQ 785
Query: 151 VQANVTKSGLDSDVYTNNNLVRFYGSCRRKRDACKVFDDMCERSVVSWNVIITVCVENLW 210
V V K GLD DVY NNNLV FYGSC++ DACKVFD+M ER+VVSWN +IT CVE+L
Sbjct: 786 VHVEVIKYGLDCDVYVNNNLVNFYGSCKKILDACKVFDEMPERTVVSWNAVITSCVESLK 845
Query: 211 LGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTA 270
LGEA+ YF+KM+D GFEPD TTM+++L C E+GNL LG+W+H Q+IERG VLN QLGTA
Sbjct: 846 LGEAIRYFLKMRDFGFEPDGTTMVLMLVICAEMGNLGLGRWIHSQVIERGLVLNYQLGTA 905
Query: 271 LIDMYAKCGAVGCARLLFSRMEEINVWTWSAMILGLAQHGYAEEALELFSNMKNSS-ISP 329
L+DMYAK GAVG A+L+F RM+E NVWTWSAMILGLAQHG+A+E LELF +M SS I P
Sbjct: 906 LVDMYAKSGAVGYAKLVFDRMKEKNVWTWSAMILGLAQHGFAKEGLELFLDMMRSSLIHP 965
Query: 330 NYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTF 389
NYVTFLGVLCAC+HAG+V DG+RYFHEM H +GIKPM +HY M DIL RAG LKEAY F
Sbjct: 966 NYVTFLGVLCACSHAGLVSDGFRYFHEMGHTYGIKPMMVHYGAMVDILGRAGLLKEAYNF 1025
Query: 390 IMNMPFQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEV 449
I MPFQP+PIV R LLSA SIHD K GV +VR+RLLELEPR S N V+VAN YA+
Sbjct: 1026 ITKMPFQPDPIVWRTLLSACSIHDVKDSTGVAYKVRKRLLELEPRRSGNFVMVANMYADA 1085
Query: 450 GMWEKVSNVRRFMKNVGLKKMKGMSWVELGGSIHRFYSGYDSQVELAGIYQILETLNLHM 509
GMWEK + VRR M++ GLKK G S VEL GSIHRF+SGYDSQ + G+YQ+L+ LNLHM
Sbjct: 1086 GMWEKAAKVRRVMRDGGLKKKAGESCVELSGSIHRFFSGYDSQDDKEGMYQLLDGLNLHM 1145
Query: 510 KVL 512
+++
Sbjct: 1146 QMM 1148
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147852347|emb|CAN80116.1| hypothetical protein VITISV_032528 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 640 bits (1652), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 303/513 (59%), Positives = 384/513 (74%), Gaps = 10/513 (1%)
Query: 1 MVRFPVPTTNHIFPPKPSNCNSDLLSKARQCLSFLKLCCSKKHLYQIHAQIQVSGLQNDA 60
MVR + T NH PPKPSN N +L+S +QCLS L LC S KHL+QI ++G
Sbjct: 1 MVRLQILTANHFCPPKPSNGNLNLVSTKQQCLSLLNLCSSMKHLFQIRGHGFIAG----- 55
Query: 61 QILKELVRFCTLSSSKNLTYARSILCNYVNDSVPIPWNNLIRGYAWSDRPREAVWVFIDM 120
L+RFC S NL +AR +L V WN+LIR YA D PREA+ +++M
Sbjct: 56 ----PLLRFCASSPLGNLNHARVLLSGSEKSEVS-SWNDLIRSYATRDSPREAIGAYLEM 110
Query: 121 KRRGIKPTEFTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRK 180
+ GI P + T+P +LKACA IS NEG ++Q +V K GLD +VY N ++ FYGSC+R
Sbjct: 111 RSLGISPDKLTFPILLKACAXISAFNEGRKIQVDVMKHGLDCNVYVQNTMIHFYGSCKRI 170
Query: 181 RDACKVFDDMCERSVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSAC 240
RDA ++FD+M R+VVSWN +++ CV+N WL ++ G FVKM+ GF+PDETTM+++LSAC
Sbjct: 171 RDARRMFDEMSYRTVVSWNAVLSACVDNEWLNDSFGLFVKMRGSGFDPDETTMVILLSAC 230
Query: 241 TELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEEINVWTWS 300
+ELGNLS G+WVH Q+IE+G V+NC+LGTAL+DMYAKCGAV A L+F RM E NVWTWS
Sbjct: 231 SELGNLSFGRWVHSQVIEKGMVVNCRLGTALVDMYAKCGAVCEASLVFHRMLERNVWTWS 290
Query: 301 AMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHV 360
AMILGLAQHG+A+EALELF MK SSISPNYVTFLGVLCAC+HAG+V+DGYR+FH+ME+V
Sbjct: 291 AMILGLAQHGFAKEALELFPKMKQSSISPNYVTFLGVLCACSHAGLVDDGYRFFHDMEYV 350
Query: 361 HGIKPMRIHYHTMADILARAGHLKEAYTFIMNMPFQPNPIVLRALLSASSIHDAKYQDGV 420
HGI+PM IHY M DIL+RAG LKEAY FI+NMP + +P+V R LLSA +IH DGV
Sbjct: 351 HGIEPMMIHYGAMVDILSRAGRLKEAYNFILNMPVEADPVVWRTLLSACTIHGINDNDGV 410
Query: 421 GNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNVGLKKMKGMSWVELGG 480
G++VR+RLLELEPR S N V+VAN YAEVG W+K +NVRR MK+ GLKKM G S +E+GG
Sbjct: 411 GDKVRKRLLELEPRRSGNFVMVANMYAEVGKWDKAANVRRTMKDTGLKKMAGESCIEVGG 470
Query: 481 SIHRFYSGYDSQVELAGIYQILETLNLHMKVLN 513
SIHRF+SG D Q++ + Q+L+ LNLHMK ++
Sbjct: 471 SIHRFFSGDDPQLDCEDVLQLLDGLNLHMKTVS 503
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224141397|ref|XP_002324059.1| predicted protein [Populus trichocarpa] gi|222867061|gb|EEF04192.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 633 bits (1633), Expect = e-179, Method: Compositional matrix adjust.
Identities = 317/514 (61%), Positives = 395/514 (76%), Gaps = 12/514 (2%)
Query: 1 MVRFPVPTTNHIFPPKPSNCNSDLLSKARQCLSFLKLCCSKKHLYQIHAQIQVSGLQNDA 60
MVR PVP T N NS LLSK CLS LKL S KH+ QIHAQI VSGLQ D
Sbjct: 1 MVRLPVPRT--------VNSNSKLLSKKNHCLSLLKLSSSVKHVSQIHAQILVSGLQQDT 52
Query: 61 QILKELVRFCTLSSSKNLTYARSILCNYVNDSVPIPWNNLIRGYAWSDRPREAVWVFIDM 120
+L EL+RFC+LS SK+L+YA S+L N + DS+P PWN LIRGYA D P+ A+ VF M
Sbjct: 53 NLLTELIRFCSLSPSKHLSYAHSLLYNSL-DSLP-PWNFLIRGYASGDAPKNAIRVFHRM 110
Query: 121 KRRGIKPTEFTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRK 180
++ G+ P FT+PFVLKACA L EG QV A++ K GLD DVY NNNLV YGSC+R
Sbjct: 111 RKEGVGPNNFTFPFVLKACATCLALEEGKQVHADIFKFGLDCDVYVNNNLVHLYGSCKRI 170
Query: 181 RDACKVFDDMCERSVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSAC 240
DACKVFD+M RS+VSWN +IT CV+NLWLG+A+ FVKMKD GFEP+ETTM+++LS C
Sbjct: 171 WDACKVFDEMPVRSIVSWNSVITACVQNLWLGDAIWNFVKMKDFGFEPNETTMVIMLSLC 230
Query: 241 TELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEEINVWTWS 300
++GNLSLG+W+H Q+IERG LNCQLGTAL+DMYAK G +G A+L+F RME+ NVWTWS
Sbjct: 231 AQIGNLSLGRWIHSQVIERGMTLNCQLGTALVDMYAKSGDLGYAKLVFDRMEKKNVWTWS 290
Query: 301 AMILGLAQHGYAEEALELFSNMKNS-SISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEH 359
AMILGLAQHG+ +E LELF MK S SI PNYVTFLGVLCAC+HAG+V++G+RYF+EMEH
Sbjct: 291 AMILGLAQHGFGKEGLELFLKMKESVSICPNYVTFLGVLCACSHAGLVDEGFRYFYEMEH 350
Query: 360 VHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMPFQPNPIVLRALLSASSIHDAKYQDG 419
HGI+PM IHY M DIL RAG+L+EAY F+M++PFQP+PI+ R LLSA +IH+A DG
Sbjct: 351 RHGIRPMVIHYGAMVDILGRAGNLEEAYNFLMDVPFQPDPILWRTLLSACNIHNANVSDG 410
Query: 420 VGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNVGLKKMKGMSWVELG 479
+ ++VR++LLELEPR S+N VI+AN YA+ GMWE +NVRR M++ GLKK+ G S + L
Sbjct: 411 LVDKVRKKLLELEPRRSENFVIIANMYADAGMWETATNVRRTMRDGGLKKIGGESCIVLE 470
Query: 480 GSIHRFYSGYDSQVELAGIYQILETLNLHMKVLN 513
GSIH+F+SG S+ + I +L+ LNL+MK++N
Sbjct: 471 GSIHQFFSGC-SKDDHESIELLLDGLNLNMKMVN 503
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359488917|ref|XP_002283393.2| PREDICTED: ATP-dependent zinc metalloprotease FTSH 6, chloroplastic-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 622 bits (1603), Expect = e-175, Method: Compositional matrix adjust.
Identities = 291/497 (58%), Positives = 374/497 (75%), Gaps = 11/497 (2%)
Query: 18 SNCNSDLLS-KARQCLSFLKLCCSKKHLYQIHAQIQVSGLQNDAQILKELVRFCTLSSSK 76
++ +SD ++ K +QCLS L LC S KHL+QI ++G L+RFC S
Sbjct: 658 TDISSDKMNVKPQQCLSLLNLCSSMKHLFQIRGHGFIAG---------PLLRFCASSPLG 708
Query: 77 NLTYARSILCNYVNDSVPIPWNNLIRGYAWSDRPREAVWVFIDMKRRGIKPTEFTYPFVL 136
NL +AR +L V WN+LIR YA D PREA+ +++M+ GI P + T+P +L
Sbjct: 709 NLNHARVLLSGSEKSEVS-SWNDLIRSYATRDSPREAIGAYLEMRSLGISPDKLTFPILL 767
Query: 137 KACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKRDACKVFDDMCERSVV 196
KACA IS NEG ++Q +V K GLD +VY N ++ FYGSC+R RDA ++FD+M R+VV
Sbjct: 768 KACAAISAFNEGRKIQVDVMKHGLDCNVYVQNTMIHFYGSCKRIRDARRMFDEMSYRTVV 827
Query: 197 SWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQL 256
SWN +++ CV+N WL ++ G FVKM+ GF+PDETTM+++LSAC+ELGNLS G+WVH Q+
Sbjct: 828 SWNAVLSACVDNEWLNDSFGLFVKMRGSGFDPDETTMVILLSACSELGNLSFGRWVHSQV 887
Query: 257 IERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEEINVWTWSAMILGLAQHGYAEEAL 316
IE+G V+NC+LGTAL+DMYAKCGAV A L+F RM E NVWTWSAMILGLAQHG+A+EAL
Sbjct: 888 IEKGMVVNCRLGTALVDMYAKCGAVCEASLVFHRMLERNVWTWSAMILGLAQHGFAKEAL 947
Query: 317 ELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADI 376
ELF MK SSISPNYVTFLGVLCAC+HAG+V+DGYR+FH+ME+VHGI+PM IHY M DI
Sbjct: 948 ELFPKMKQSSISPNYVTFLGVLCACSHAGLVDDGYRFFHDMEYVHGIEPMMIHYGAMVDI 1007
Query: 377 LARAGHLKEAYTFIMNMPFQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGS 436
L+RAG LKEAY FI+NMP + +P+V R LLSA +IH DGVG++VR+RLLELEPR S
Sbjct: 1008 LSRAGRLKEAYNFILNMPVEADPVVWRTLLSACTIHGINDNDGVGDKVRKRLLELEPRRS 1067
Query: 437 QNLVIVANKYAEVGMWEKVSNVRRFMKNVGLKKMKGMSWVELGGSIHRFYSGYDSQVELA 496
N V+VAN YAEVG W+K +NVRR MK+ GLKKM G S +E+GGSIHRF+SG D Q++
Sbjct: 1068 GNFVMVANMYAEVGKWDKAANVRRTMKDTGLKKMAGESCIEVGGSIHRFFSGDDPQLDCE 1127
Query: 497 GIYQILETLNLHMKVLN 513
+ Q+L+ LNLHMK ++
Sbjct: 1128 DVLQLLDGLNLHMKTVS 1144
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449519932|ref|XP_004166988.1| PREDICTED: pentatricopeptide repeat-containing protein At2g36730-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 608 bits (1567), Expect = e-171, Method: Compositional matrix adjust.
Identities = 291/516 (56%), Positives = 376/516 (72%), Gaps = 2/516 (0%)
Query: 1 MVRFPVPTTNHIFPPKPSNCNSD--LLSKARQCLSFLKLCCSKKHLYQIHAQIQVSGLQN 58
MVR + + FP N +S LS Q LS LK C S HL++IHAQI VSGLQN
Sbjct: 1 MVRLWISAVHQFFPINVHNYSSKPKFLSTKHQLLSLLKHCSSTNHLFEIHAQILVSGLQN 60
Query: 59 DAQILKELVRFCTLSSSKNLTYARSILCNYVNDSVPIPWNNLIRGYAWSDRPREAVWVFI 118
D+ EL+R LS S+NL+Y S+L + S +PWN +IRGY+ SD P+EA+ +F
Sbjct: 61 DSFFTTELLRVAALSPSRNLSYGCSLLFHCHFHSATMPWNFIIRGYSSSDSPQEAISLFG 120
Query: 119 DMKRRGIKPTEFTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCR 178
+M+RRG++P T+PF+LKACA ++ L EG Q A K GLD DVY N L+ FYGSC+
Sbjct: 121 EMRRRGVRPNNLTFPFLLKACATLATLQEGKQFHAIAIKCGLDLDVYVRNTLINFYGSCK 180
Query: 179 RKRDACKVFDDMCERSVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLS 238
R A KVFD+M ER++VSWN +IT CVEN EA+ YF+KM + GFEPDETTM+V+LS
Sbjct: 181 RMSGARKVFDEMTERTLVSWNAVITACVENFCFDEAIDYFLKMGNHGFEPDETTMVVILS 240
Query: 239 ACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEEINVWT 298
AC ELGNLSLG+WVH Q++ RG VLN QLGTA +DMYAK G VGCAR +F+ +++ +VWT
Sbjct: 241 ACAELGNLSLGRWVHSQVVGRGMVLNVQLGTAFVDMYAKSGDVGCARHVFNCLKQKSVWT 300
Query: 299 WSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEME 358
WSAMILGLAQHG+A EA+ELF+NM +S I PN+VTF+GVLCAC+HAG+V+ Y YF+ ME
Sbjct: 301 WSAMILGLAQHGFANEAIELFTNMTSSPIVPNHVTFIGVLCACSHAGLVDKSYHYFNLME 360
Query: 359 HVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMPFQPNPIVLRALLSASSIHDAKYQD 418
V+GIKPM IHY +M D+L RAG +KEAY IM+MP +P+PIV R LLSA S D
Sbjct: 361 RVYGIKPMMIHYGSMVDVLGRAGQVKEAYELIMSMPVEPDPIVWRTLLSACSGRDVNGGA 420
Query: 419 GVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNVGLKKMKGMSWVEL 478
V E R+RLLELEP+ N+V+VANK+AE+GMW++ ++ RR MK+ G+KKM G S +EL
Sbjct: 421 EVAEEARKRLLELEPKRGGNVVMVANKFAELGMWKQAADYRRTMKDRGIKKMAGESCIEL 480
Query: 479 GGSIHRFYSGYDSQVELAGIYQILETLNLHMKVLNF 514
GGS+ +F+SG+DS+ GIY +L+ LNLHM++ NF
Sbjct: 481 GGSLRKFFSGFDSRAAPDGIYDLLDGLNLHMQLTNF 516
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357487485|ref|XP_003614030.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355515365|gb|AES96988.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 607 bits (1565), Expect = e-171, Method: Compositional matrix adjust.
Identities = 284/492 (57%), Positives = 376/492 (76%), Gaps = 3/492 (0%)
Query: 25 LSKARQCLSFLKLCCSKKHLYQIHAQIQVSGLQNDAQILKELVRFCTLSSSKNLTYARSI 84
L+ +QCL+ L S L+Q+ AQI ++ L ND IL +LV F +LS KNL++AR +
Sbjct: 7 LTNKQQCLNLLNSLHSITKLHQLQAQIHLNSLHNDTHILSQLVYFFSLSPFKNLSHARKL 66
Query: 85 LCNYVNDSVPIPWNNLIRGYAWSDRPREAVWVFIDMKRRGIKPTEFTYPFVLKACAEISG 144
+ ++ N+ PI WN LIRGYA SD P E++WVF M+ G+KP + TYPF+ K+CA
Sbjct: 67 VFHFSNNPSPISWNILIRGYASSDSPIESIWVFKKMRENGVKPNKLTYPFIFKSCAMALV 126
Query: 145 LNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKRDACKVFDDMCERSVVSWNVIITV 204
L EG QV A++ K GLDSDVY NN++ FYG C++ A KVFD+MC R++VSWN ++T
Sbjct: 127 LCEGKQVHADLVKFGLDSDVYVCNNMINFYGCCKKIVYARKVFDEMCVRTIVSWNSVMTA 186
Query: 205 CVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLN 264
CVEN+WL + +GYF KM+D FEPDET+M+++LS C ELG LSLG+WVH QLI +G VL+
Sbjct: 187 CVENVWLSDGIGYFFKMRDCAFEPDETSMVLLLSVCAELGYLSLGRWVHSQLILKGMVLS 246
Query: 265 CQLGTALIDMYAKCGAVGCARLLFSRMEEINVWTWSAMILGLAQHGYAEEALELFSNM-- 322
LGTAL+DMY K GA+G AR++F RME+ NVWTWSAMI+GLAQHG+AEEAL LF M
Sbjct: 247 VHLGTALVDMYGKSGALGYARVVFERMEKRNVWTWSAMIMGLAQHGFAEEALVLFDMMND 306
Query: 323 -KNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAG 381
K+++ISPNYVT+LGVLCAC+HAGMV++G+RYF +ME VHGIKPM +HY M D+L RAG
Sbjct: 307 KKSNNISPNYVTYLGVLCACSHAGMVDEGFRYFRDMEFVHGIKPMMVHYGAMVDVLGRAG 366
Query: 382 HLKEAYTFIMNMPFQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVI 441
HL EAY FI +MPF P+PIV R LLSA ++HD + G+G++VR+RLLE+EP+ NLVI
Sbjct: 367 HLGEAYRFIQSMPFAPDPIVWRTLLSACTVHDVCDRTGIGDKVRKRLLEMEPKRGGNLVI 426
Query: 442 VANKYAEVGMWEKVSNVRRFMKNVGLKKMKGMSWVELGGSIHRFYSGYDSQVELAGIYQI 501
VAN YAEVG WEK +NVRR M++ GLKKM G S V+LGGS++RF++G+DS+ +L +Y +
Sbjct: 427 VANMYAEVGNWEKAANVRRVMRDGGLKKMAGESCVDLGGSMYRFFAGHDSRPDLMPVYDL 486
Query: 502 LETLNLHMKVLN 513
L+ LNLH+K+++
Sbjct: 487 LDALNLHLKMVH 498
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356567046|ref|XP_003551734.1| PREDICTED: pentatricopeptide repeat-containing protein At2g36730-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 607 bits (1564), Expect = e-171, Method: Compositional matrix adjust.
Identities = 294/494 (59%), Positives = 367/494 (74%), Gaps = 6/494 (1%)
Query: 25 LSKARQCLSFLKLCCSKKHLYQIHAQIQVSGLQNDAQILKELVRFCTLSSSKNLTYARSI 84
LSK +QCLS L C S L QI AQ+ VSGL D ++L ELV FC+LS SKNL +ARS
Sbjct: 13 LSKKQQCLSLLNSCRSMDQLRQIQAQVHVSGLYQDTRVLSELVYFCSLSPSKNLRHARSF 72
Query: 85 LCNYVNDSVPIPWNNLIRGYAWSDRPREAVWVFIDMKRRGIKPTEFTYPFVLKACAEISG 144
+ + S PI WN LIRGYA SD P EA WVF M+ RG P + T+PF+LK+CA S
Sbjct: 73 VHHAATPS-PISWNILIRGYAASDSPLEAFWVFRKMRERGAMPNKLTFPFLLKSCAVASA 131
Query: 145 LNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKRDACKVFDDMCERSVVSWNVIITV 204
L EG QV A+ K GLDSDVY NNL+ FYG C++ DA KVF +M ER+VVSWN ++T
Sbjct: 132 LFEGKQVHADAVKCGLDSDVYVGNNLINFYGCCKKIVDARKVFGEMPERTVVSWNSVMTA 191
Query: 205 CVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLN 264
CVE+LWLG+ +GYF +M GFEPDET+M+++LSAC ELG LSLG+WVH QL+ RG VL+
Sbjct: 192 CVESLWLGDGIGYFFRMWGCGFEPDETSMVLLLSACAELGYLSLGRWVHSQLVLRGMVLS 251
Query: 265 CQLGTALIDMYAKCGAVGCARLLFSRMEEINVWTWSAMILGLAQHGYAEEALELFSNMKN 324
QLGTAL+DMY K GA+G AR +F RME NVWTWSAMILGLAQHG+ EEALELF+ M N
Sbjct: 252 VQLGTALVDMYGKSGALGYARDVFERMENRNVWTWSAMILGLAQHGFGEEALELFAIMNN 311
Query: 325 S-----SISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILAR 379
+ I PNYVT+LGVLCAC+HAGMV++GY+YFH+ME VHGIKP+ HY M D+L R
Sbjct: 312 NNNDNRDIRPNYVTYLGVLCACSHAGMVDEGYQYFHDMECVHGIKPLMTHYGAMVDVLGR 371
Query: 380 AGHLKEAYTFIMNMPFQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNL 439
AG L+EAY FI +MP +P+P+V R LLSA ++HD G+G V ++LL EPR NL
Sbjct: 372 AGRLEEAYEFIQSMPIEPDPVVWRTLLSACTVHDVHDHTGIGERVSKKLLLKEPRRGGNL 431
Query: 440 VIVANKYAEVGMWEKVSNVRRFMKNVGLKKMKGMSWVELGGSIHRFYSGYDSQVELAGIY 499
VIVAN YAEVGMWE+ +NVRR M++ G+KK+ G S V+LGGS+HRF++GYD +L +Y
Sbjct: 432 VIVANMYAEVGMWEEAANVRRVMRDGGMKKVAGESCVDLGGSMHRFFAGYDPCPDLVPVY 491
Query: 500 QILETLNLHMKVLN 513
+L+ LNLH+K++N
Sbjct: 492 HLLDGLNLHLKMVN 505
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449461643|ref|XP_004148551.1| PREDICTED: pentatricopeptide repeat-containing protein At2g36730-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 605 bits (1559), Expect = e-170, Method: Compositional matrix adjust.
Identities = 290/516 (56%), Positives = 375/516 (72%), Gaps = 2/516 (0%)
Query: 1 MVRFPVPTTNHIFPPKPSNCNSD--LLSKARQCLSFLKLCCSKKHLYQIHAQIQVSGLQN 58
MVR + + FP N +S LS Q LS L C S HL++IHAQI VSGLQN
Sbjct: 1 MVRLWISAVHQFFPINVHNYSSKPKFLSTKHQLLSLLNHCSSTNHLFEIHAQILVSGLQN 60
Query: 59 DAQILKELVRFCTLSSSKNLTYARSILCNYVNDSVPIPWNNLIRGYAWSDRPREAVWVFI 118
D+ EL+R LS S+NL+Y S+L + S +PWN +IRGY+ SD P+EA+ +F
Sbjct: 61 DSFFTTELLRVAALSPSRNLSYGCSLLFHCHFHSATMPWNFIIRGYSSSDSPQEAISLFG 120
Query: 119 DMKRRGIKPTEFTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCR 178
+M+RRG++P T+PF+LKACA ++ L EG Q A K GLD DVY N L+ FYGSC+
Sbjct: 121 EMRRRGVRPNNLTFPFLLKACATLATLQEGKQFHAIAIKCGLDLDVYVRNTLIYFYGSCK 180
Query: 179 RKRDACKVFDDMCERSVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLS 238
R A KVFD+M ER++VSWN +IT CVEN EA+ YF+KM + GFEPDETTM+V+LS
Sbjct: 181 RMSGARKVFDEMTERTLVSWNAVITACVENFCFDEAIDYFLKMGNHGFEPDETTMVVILS 240
Query: 239 ACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEEINVWT 298
AC ELGNLSLG+WVH Q++ RG VLN QLGTA +DMYAK G VGCAR +F+ +++ +VWT
Sbjct: 241 ACAELGNLSLGRWVHSQVVGRGMVLNVQLGTAFVDMYAKSGDVGCARHVFNCLKQKSVWT 300
Query: 299 WSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEME 358
WSAMILGLAQHG+A EA+ELF+NM +S I PN+VTF+GVLCAC+HAG+V+ Y YF+ ME
Sbjct: 301 WSAMILGLAQHGFANEAIELFTNMMSSPIVPNHVTFIGVLCACSHAGLVDKSYHYFNLME 360
Query: 359 HVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMPFQPNPIVLRALLSASSIHDAKYQD 418
V+GIKPM IHY +M D+L RAG +KEAY IM+MP +P+PIV R LLSA S D
Sbjct: 361 RVYGIKPMMIHYGSMVDVLGRAGQVKEAYELIMSMPVEPDPIVWRTLLSACSGRDVNGGA 420
Query: 419 GVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNVGLKKMKGMSWVEL 478
V E R+RLLELEP+ N+V+VANK+AE+GMW++ ++ RR MK+ G+KKM G S +EL
Sbjct: 421 EVAEEARKRLLELEPKRGGNVVMVANKFAELGMWKQAADYRRTMKDRGIKKMAGESCIEL 480
Query: 479 GGSIHRFYSGYDSQVELAGIYQILETLNLHMKVLNF 514
GGS+ +F+SG+DS+ GIY +L+ LNLHM++ NF
Sbjct: 481 GGSLRKFFSGFDSRAAPDGIYDLLDGLNLHMQLTNF 516
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297827165|ref|XP_002881465.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297327304|gb|EFH57724.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 579 bits (1493), Expect = e-162, Method: Compositional matrix adjust.
Identities = 283/494 (57%), Positives = 354/494 (71%), Gaps = 4/494 (0%)
Query: 21 NSDLLSKARQCLSFLKLCCSKKHLYQIHAQIQVSGLQNDAQILKELVRFCTLSSSKNLTY 80
+S SK QCL FLKLC S KHL QIH QI VS LQND+ I+ EL+R +LS +K+L +
Sbjct: 6 DSSFKSKKHQCLIFLKLCSSIKHLLQIHGQIHVSSLQNDSFIISELIRVSSLSHTKDLAF 65
Query: 81 ARSILCNYVNDSVPIPWNNLIRGYAWSDRPREAVWVFIDMKRRGIKPTEFTYPFVLKACA 140
AR++L + +DS P WN L RGY+ SD P E++WV+ +MKRR IKP + T+PF+LKACA
Sbjct: 66 ARTLLL-HSSDSTPSTWNMLTRGYSSSDTPVESIWVYSEMKRRRIKPNKLTFPFLLKACA 124
Query: 141 EISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKRDACKVFDDMCERSVVSWNV 200
GL G Q+Q V K G DSDVY NNL+ YGSC++ DA KVFD+M ER+VVSWN
Sbjct: 125 SFLGLTAGRQIQVEVLKHGFDSDVYVGNNLIHLYGSCKKTSDARKVFDEMTERNVVSWNS 184
Query: 201 IITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERG 260
I+T VEN V F +M F PDETTM+V+LSAC GNLSLGK VH Q++ R
Sbjct: 185 IMTALVENGKFNLVVECFFEMIGRQFCPDETTMVVLLSACG--GNLSLGKLVHSQVMVRE 242
Query: 261 TVLNCQLGTALIDMYAKCGAVGCARLLFSRMEEINVWTWSAMILGLAQHGYAEEALELFS 320
LNC+LGTAL+DMYAK G + ARL+F RM + NVWTWSAMI+GLAQ+G+AEEAL+LFS
Sbjct: 243 LELNCRLGTALVDMYAKSGGLKYARLVFERMADKNVWTWSAMIVGLAQYGFAEEALQLFS 302
Query: 321 NM-KNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILAR 379
M K SS+ PNYVTFLGVLCAC+H G+V+DGY+YFHEME H IKPM IHY M DIL R
Sbjct: 303 KMMKESSVRPNYVTFLGVLCACSHTGLVDDGYKYFHEMEKRHKIKPMMIHYGAMVDILGR 362
Query: 380 AGHLKEAYTFIMNMPFQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNL 439
AG L EAY FI MPF+P+ +V R LLSA SIH + G+G +V++RL+ELEP+ S NL
Sbjct: 363 AGRLNEAYDFIQKMPFEPDAVVWRTLLSACSIHHDEDDKGIGEKVKKRLIELEPKRSGNL 422
Query: 440 VIVANKYAEVGMWEKVSNVRRFMKNVGLKKMKGMSWVELGGSIHRFYSGYDSQVELAGIY 499
VIVAN++AE MW++ + VRR MK +KK+ G S +ELGGS H+F+SGYD + E IY
Sbjct: 423 VIVANRFAEARMWDEAAEVRRVMKETKMKKIAGESCLELGGSFHKFFSGYDPRPEYVSIY 482
Query: 500 QILETLNLHMKVLN 513
++L+ + N
Sbjct: 483 ELLDLFKFQLTCDN 496
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15228026|ref|NP_181211.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75216191|sp|Q9ZQA1.1|PP188_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g36730 gi|4415918|gb|AAD20149.1| hypothetical protein [Arabidopsis thaliana] gi|330254198|gb|AEC09292.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 574 bits (1480), Expect = e-161, Method: Compositional matrix adjust.
Identities = 280/485 (57%), Positives = 352/485 (72%), Gaps = 4/485 (0%)
Query: 26 SKARQCLSFLKLCCSKKHLYQIHAQIQVSGLQNDAQILKELVRFCTLSSSKNLTYARSIL 85
S+ QCL FLKLC S KHL QIH QI +S LQND+ I+ ELVR +LS +K+L +AR++L
Sbjct: 11 SRKHQCLIFLKLCSSIKHLLQIHGQIHLSSLQNDSFIISELVRVSSLSLAKDLAFARTLL 70
Query: 86 CNYVNDSVPIPWNNLIRGYAWSDRPREAVWVFIDMKRRGIKPTEFTYPFVLKACAEISGL 145
+ +DS P WN L RGY+ SD P E++WV+ +MKRRGIKP + T+PF+LKACA GL
Sbjct: 71 L-HSSDSTPSTWNMLSRGYSSSDSPVESIWVYSEMKRRGIKPNKLTFPFLLKACASFLGL 129
Query: 146 NEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKRDACKVFDDMCERSVVSWNVIITVC 205
G Q+Q V K G D DVY NNL+ YG+C++ DA KVFD+M ER+VVSWN I+T
Sbjct: 130 TAGRQIQVEVLKHGFDFDVYVGNNLIHLYGTCKKTSDARKVFDEMTERNVVSWNSIMTAL 189
Query: 206 VENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNC 265
VEN L F +M F PDETTM+V+LSAC GNLSLGK VH Q++ R LNC
Sbjct: 190 VENGKLNLVFECFCEMIGKRFCPDETTMVVLLSACG--GNLSLGKLVHSQVMVRELELNC 247
Query: 266 QLGTALIDMYAKCGAVGCARLLFSRMEEINVWTWSAMILGLAQHGYAEEALELFSNM-KN 324
+LGTAL+DMYAK G + ARL+F RM + NVWTWSAMI+GLAQ+G+AEEAL+LFS M K
Sbjct: 248 RLGTALVDMYAKSGGLEYARLVFERMVDKNVWTWSAMIVGLAQYGFAEEALQLFSKMMKE 307
Query: 325 SSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLK 384
SS+ PNYVTFLGVLCAC+H G+V+DGY+YFHEME +H IKPM IHY M DIL RAG L
Sbjct: 308 SSVRPNYVTFLGVLCACSHTGLVDDGYKYFHEMEKIHKIKPMMIHYGAMVDILGRAGRLN 367
Query: 385 EAYTFIMNMPFQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVAN 444
EAY FI MPF+P+ +V R LLSA SIH + +G+G +V++RL+ELEP+ S NLVIVAN
Sbjct: 368 EAYDFIKKMPFEPDAVVWRTLLSACSIHHDEDDEGIGEKVKKRLIELEPKRSGNLVIVAN 427
Query: 445 KYAEVGMWEKVSNVRRFMKNVGLKKMKGMSWVELGGSIHRFYSGYDSQVELAGIYQILET 504
++AE MW + + VRR MK +KK+ G S +ELGGS HRF+SGYD + E IY++L+
Sbjct: 428 RFAEARMWAEAAEVRRVMKETKMKKIAGESCLELGGSFHRFFSGYDPRSEYVSIYELLDL 487
Query: 505 LNLHM 509
+
Sbjct: 488 FKFQL 492
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 514 | ||||||
| TAIR|locus:2040565 | 501 | AT2G36730 [Arabidopsis thalian | 0.945 | 0.970 | 0.563 | 1.2e-143 | |
| TAIR|locus:2154389 | 646 | LPA66 "LOW PSII ACCUMULATION 6 | 0.677 | 0.538 | 0.358 | 4.6e-78 | |
| TAIR|locus:2025946 | 638 | CRR28 "CHLORORESPIRATORY REDUC | 0.982 | 0.791 | 0.362 | 3.4e-77 | |
| TAIR|locus:4010713895 | 595 | AT4G21065 "AT4G21065" [Arabido | 0.931 | 0.805 | 0.346 | 2.4e-76 | |
| TAIR|locus:2056740 | 603 | OTP85 "ORGANELLE TRANSCRIPT PR | 0.918 | 0.782 | 0.347 | 2.2e-73 | |
| TAIR|locus:2202074 | 809 | CRR22 "CHLORORESPIRATORY REDUC | 0.892 | 0.567 | 0.359 | 8.6e-72 | |
| TAIR|locus:2011892 | 596 | AT1G50270 "AT1G50270" [Arabido | 0.896 | 0.773 | 0.351 | 1.1e-71 | |
| TAIR|locus:2054131 | 697 | SLO2 "AT2G13600" [Arabidopsis | 0.671 | 0.494 | 0.358 | 1.6e-71 | |
| TAIR|locus:2057574 | 583 | AT2G33760 [Arabidopsis thalian | 0.898 | 0.792 | 0.354 | 4.8e-71 | |
| TAIR|locus:2049562 | 584 | AT2G01510 "AT2G01510" [Arabido | 0.912 | 0.803 | 0.351 | 1.8e-69 |
| TAIR|locus:2040565 AT2G36730 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1404 (499.3 bits), Expect = 1.2e-143, P = 1.2e-143
Identities = 277/492 (56%), Positives = 346/492 (70%)
Query: 21 NSDLLSKAR--QCLSFLKLCCSKKHLYQIHAQIQVSGLQNDAQILKELVRFCTLSSSKNL 78
+SD K+R QCL FLKLC S KHL QIH QI +S LQND+ I+ ELVR +LS +K+L
Sbjct: 4 SSDSCFKSRKHQCLIFLKLCSSIKHLLQIHGQIHLSSLQNDSFIISELVRVSSLSLAKDL 63
Query: 79 TYARSILCNYVNDSVPIPWNNLIRGYAWSDRPREAVWVFIDMKRRGIKPTEFTYPFVLKA 138
+AR++L + +DS P WN L RGY+ SD P E++WV+ +MKRRGIKP + T+PF+LKA
Sbjct: 64 AFARTLLL-HSSDSTPSTWNMLSRGYSSSDSPVESIWVYSEMKRRGIKPNKLTFPFLLKA 122
Query: 139 CAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKRDACKVFDDMCERSVVSW 198
CA GL G Q+Q V K G D DVY NNL+ YG+C++ DA KVFD+M ER+VVSW
Sbjct: 123 CASFLGLTAGRQIQVEVLKHGFDFDVYVGNNLIHLYGTCKKTSDARKVFDEMTERNVVSW 182
Query: 199 NVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIE 258
N I+T VEN L F +M F PDETTM+V+LSAC GNLSLGK VH Q++
Sbjct: 183 NSIMTALVENGKLNLVFECFCEMIGKRFCPDETTMVVLLSACG--GNLSLGKLVHSQVMV 240
Query: 259 RGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEEINVWTWSAMILGLAQHGYAEEALEL 318
R LNC+LGTAL+DMYAK G + ARL+F RM + NVWTWSAMI+GLAQ+G+AEEAL+L
Sbjct: 241 RELELNCRLGTALVDMYAKSGGLEYARLVFERMVDKNVWTWSAMIVGLAQYGFAEEALQL 300
Query: 319 FSNM-KNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADIL 377
FS M K SS+ PNYVTFLGVLCAC+H G+V+DGY+YFHEME +H IKPM IHY M DIL
Sbjct: 301 FSKMMKESSVRPNYVTFLGVLCACSHTGLVDDGYKYFHEMEKIHKIKPMMIHYGAMVDIL 360
Query: 378 ARAGHLKEAYTFIMNMPFQPNPIVLRALLSASSIHDAKYQDGVGNXXXXXXXXXXPRGSQ 437
RAG L EAY FI MPF+P+ +V R LLSA SIH + +G+G P+ S
Sbjct: 361 GRAGRLNEAYDFIKKMPFEPDAVVWRTLLSACSIHHDEDDEGIGEKVKKRLIELEPKRSG 420
Query: 438 NLVIVANKYAEVGMWEKVSNVRRFMKNVGLKKMKGMSWVELGGSIHRFYSGYDSQVELAG 497
NLVIVAN++AE MW + + VRR MK +KK+ G S +ELGGS HRF+SGYD + E
Sbjct: 421 NLVIVANRFAEARMWAEAAEVRRVMKETKMKKIAGESCLELGGSFHRFFSGYDPRSEYVS 480
Query: 498 IYQILETLNLHM 509
IY++L+ +
Sbjct: 481 IYELLDLFKFQL 492
|
|
| TAIR|locus:2154389 LPA66 "LOW PSII ACCUMULATION 66" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 574 (207.1 bits), Expect = 4.6e-78, Sum P(2) = 4.6e-78
Identities = 128/357 (35%), Positives = 199/357 (55%)
Query: 161 DSDVYTNNNLVRFY---GSCRRKRDACKVFDDMCERSVVSWNVIITVCVENLWLGEAVGY 217
D ++ N ++ Y G C+ R +FD M +RSVVSWN +I+ N + +AV
Sbjct: 205 DGEIVLWNVMIDGYMRLGDCKAAR---MLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEV 261
Query: 218 FVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAK 277
F +MK P+ T++ VL A + LG+L LG+W+HL + G ++ LG+ALIDMY+K
Sbjct: 262 FREMKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSK 321
Query: 278 CGAVGCARLLFSRMEEINVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGV 337
CG + A +F R+ NV TWSAMI G A HG A +A++ F M+ + + P+ V ++ +
Sbjct: 322 CGIIEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINL 381
Query: 338 LCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMPFQP 397
L AC+H G+VE+G RYF +M V G++P HY M D+L R+G L EA FI+NMP +P
Sbjct: 382 LTACSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKP 441
Query: 398 NPIVLRALLSASSIHDAKYQDGVGNXXXXXXXXXXPRGSQNLVIVANKYAEVGMWEKVSN 457
+ ++ +ALL A + +G P S V ++N YA G W +VS
Sbjct: 442 DDVIWKALLGACRMQG---NVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSE 498
Query: 458 VRRFMKNVGLKKMKGMSWVELGGSIHRFYSGYDSQVELAGIYQILETLNLHMKVLNF 514
+R MK ++K G S +++ G +H F DS + I +L ++ +++ +
Sbjct: 499 MRLRMKEKDIRKDPGCSLIDIDGVLHEFVVEDDSHPKAKEINSMLVEISDKLRLAGY 555
|
|
| TAIR|locus:2025946 CRR28 "CHLORORESPIRATORY REDUCTION28" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 777 (278.6 bits), Expect = 3.4e-77, P = 3.4e-77
Identities = 189/521 (36%), Positives = 272/521 (52%)
Query: 7 PTTNHIFPPKPSNCNSDLLSKARQCLSFLKLCCSKKHLYQIHAQIQVSGLQNDAQILKEL 66
P + HI PP S S + ++ S + C L Q+HA + + L
Sbjct: 28 PLSPHI-PPASSPSASTAGNHHQRIFSLAETCSDMSQLKQLHAFTLRTTYPEEPATLFLY 86
Query: 67 VRFCTLSSS-KNLTYARSILCNYVNDSVPIPWNNLIRGYAWS-DRPREAVWVFIDMKRRG 124
+ LSSS ++ YA + + N S WN LIR A R EA ++ M RG
Sbjct: 87 GKILQLSSSFSDVNYAFRVFDSIENHS-SFMWNTLIRACAHDVSRKEEAFMLYRKMLERG 145
Query: 125 -IKPTEFTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKRDA 183
P + T+PFVLKACA I G +EG QV + K G DVY NN L+ YGSC A
Sbjct: 146 ESSPDKHTFPFVLKACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLA 205
Query: 184 CKVFDDMCERSVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTEL 243
KVFD+M ERS+VSWN +I V A+ F +M+ FEPD TM VLSAC L
Sbjct: 206 RKVFDEMPERSLVSWNSMIDALVRFGEYDSALQLFREMQR-SFEPDGYTMQSVLSACAGL 264
Query: 244 GNLSLGKWVHLQLIERGTV---LNCQLGTALIDMYAKCGAVGCARLLFSRMEEINVWTWS 300
G+LSLG W H L+ + V ++ + +LI+MY KCG++ A +F M++ ++ +W+
Sbjct: 265 GSLSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWN 324
Query: 301 AMILGLAQHGYAEEALELFSNM--KNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEME 358
AMILG A HG AEEA+ F M K ++ PN VTF+G+L ACNH G V G +YF M
Sbjct: 325 AMILGFATHGRAEEAMNFFDRMVDKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMV 384
Query: 359 HVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMPFQPNPIVLRALLSASSIHDAKYQ- 417
+ I+P HY + D++ARAG++ EA +M+MP +P+ ++ R+LL A A +
Sbjct: 385 RDYCIEPALEHYGCIVDLIARAGYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVEL 444
Query: 418 --DGVGNXXXXXXXXXXPRG--SQNLVIVANKYAEVGMWEKVSNVRRFMKNVGLKKMKGM 473
+ N G S V+++ YA W V VR+ M G++K G
Sbjct: 445 SEEIARNIIGTKEDNESSNGNCSGAYVLLSRVYASASRWNDVGIVRKLMSEHGIRKEPGC 504
Query: 474 SWVELGGSIHRFYSGYDSQVELAGIYQILETLNLHMKVLNF 514
S +E+ G H F++G S + IYQ L+ ++ ++ + +
Sbjct: 505 SSIEINGISHEFFAGDTSHPQTKQIYQQLKVIDDRLRSIGY 545
|
|
| TAIR|locus:4010713895 AT4G21065 "AT4G21065" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 769 (275.8 bits), Expect = 2.4e-76, P = 2.4e-76
Identities = 169/488 (34%), Positives = 269/488 (55%)
Query: 24 LLSKARQCLSFLKL--CCSKKHLYQIHAQIQVSGLQ-NDAQILKELVRFC-TLSSSKNLT 79
LL +C++ L+ S L QIHA G+ +DA++ K L+ + +L S ++
Sbjct: 11 LLPMVEKCINLLQTYGVSSITKLRQIHAFSIRHGVSISDAELGKHLIFYLVSLPSPPPMS 70
Query: 80 YARSILCNYVNDSVPIPWNNLIRGYAWSDRPREAVWVFIDMKRRG-IKPTEFTYPFVLKA 138
YA + WN LIRGYA A ++ +M+ G ++P TYPF++KA
Sbjct: 71 YAHKVFSKIEKPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKA 130
Query: 139 CAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKRDACKVFDDMCERSVVSW 198
++ + G + + V +SG S +Y N+L+ Y +C A KVFD M E+ +V+W
Sbjct: 131 VTTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAW 190
Query: 199 NVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIE 258
N +I EN EA+ + +M G +PD T++ +LSAC ++G L+LGK VH+ +I+
Sbjct: 191 NSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIK 250
Query: 259 RGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEEINVWTWSAMILGLAQHGYAEEALEL 318
G N L+D+YA+CG V A+ LF M + N +W+++I+GLA +G+ +EA+EL
Sbjct: 251 VGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIEL 310
Query: 319 FSNMKNSS-ISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADIL 377
F M+++ + P +TF+G+L AC+H GMV++G+ YF M + I+P H+ M D+L
Sbjct: 311 FKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLL 370
Query: 378 ARAGHLKEAYTFIMNMPFQPNPIVLRALLSASSIHDAKYQDGVGNXXXXXXXXXXPRGSQ 437
ARAG +K+AY +I +MP QPN ++ R LL A ++H + P S
Sbjct: 371 ARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHG---DSDLAEFARIQILQLEPNHSG 427
Query: 438 NLVIVANKYAEVGMWEKVSNVRRFMKNVGLKKMKGMSWVELGGSIHRFYSGYDSQVELAG 497
+ V+++N YA W V +R+ M G+KK+ G S VE+G +H F G S +
Sbjct: 428 DYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEVGNRVHEFLMGDKSHPQSDA 487
Query: 498 IYQILETL 505
IY L+ +
Sbjct: 488 IYAKLKEM 495
|
|
| TAIR|locus:2056740 OTP85 "ORGANELLE TRANSCRIPT PROCESSING 85" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 741 (265.9 bits), Expect = 2.2e-73, P = 2.2e-73
Identities = 166/478 (34%), Positives = 262/478 (54%)
Query: 38 CCSKKHLYQIHAQIQVSGLQNDAQILKELVRFCTLSSSKN-LTYARSILCNYVNDSVPIP 96
C S + L QI A S ++ D + +L+ FCT S +++ ++YAR + + I
Sbjct: 39 CNSLRELMQIQAYAIKSHIE-DVSFVAKLINFCTESPTESSMSYARHLFEAMSEPDIVI- 96
Query: 97 WNNLIRGYAWSDRPREAVWVFIDMKRRGIKPTEFTYPFVLKACAEISGLNEGMQVQANVT 156
+N++ RGY+ P E +F+++ GI P +T+P +LKACA L EG Q+
Sbjct: 97 FNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLLKACAVAKALEEGRQLHCLSM 156
Query: 157 KSGLDSDVYTNNNLVRFYGSCRRKRDACKVFDDMCERSVVSWNVIITVCVENLWLGEAVG 216
K GLD +VY L+ Y C A VFD + E VV +N +IT EA+
Sbjct: 157 KLGLDDNVYVCPTLINMYTECEDVDSARCVFDRIVEPCVVCYNAMITGYARRNRPNEALS 216
Query: 217 YFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYA 276
F +M+ +P+E T+L VLS+C LG+L LGKW+H + ++ TALIDM+A
Sbjct: 217 LFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKWIHKYAKKHSFCKYVKVNTALIDMFA 276
Query: 277 KCGAVGCARLLFSRMEEINVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLG 336
KCG++ A +F +M + WSAMI+ A HG AE+++ +F M++ ++ P+ +TFLG
Sbjct: 277 KCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKSMLMFERMRSENVQPDEITFLG 336
Query: 337 VLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMPFQ 396
+L AC+H G VE+G +YF +M GI P HY +M D+L+RAG+L++AY FI +P
Sbjct: 337 LLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKHYGSMVDLLSRAGNLEDAYEFIDKLPIS 396
Query: 397 PNPIVLRALLSASSIHDAKYQDGVGNXXXXXXXXXXPRGSQNLVIVANKYAEVGMWEKVS 456
P P++ R LL+A S H+ D G + VI++N YA WE V
Sbjct: 397 PTPMLWRILLAACSSHNNL--DLAEKVSERIFELDDSHGG-DYVILSNLYARNKKWEYVD 453
Query: 457 NVRRFMKNVGLKKMKGMSWVELGGSIHRFYSGYDSQVELAGIYQILETLNLHMKVLNF 514
++R+ MK+ K+ G S +E+ +H F+SG + +++ L+ + +K+ +
Sbjct: 454 SLRKVMKDRKAVKVPGCSSIEVNNVVHEFFSGDGVKSATTKLHRALDEMVKELKLSGY 511
|
|
| TAIR|locus:2202074 CRR22 "CHLORORESPIRATORY REDUCTION22" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 726 (260.6 bits), Expect = 8.6e-72, P = 8.6e-72
Identities = 167/465 (35%), Positives = 240/465 (51%)
Query: 46 QIHAQIQVSGLQNDAQILKELVRFCTLSSSKNLTYARSILCNYVNDSVPIPWNNLIRGYA 105
+IH SG + I LV S L AR + + +V + WN++I Y
Sbjct: 257 EIHGYAMRSGFDSLVNISTALVDMYAKCGS--LETARQLFDGMLERNV-VSWNSMIDAYV 313
Query: 106 WSDRPREAVWVFIDMKRRGIKPTEFTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVY 165
++ P+EA+ +F M G+KPT+ + L ACA++ L G + + GLD +V
Sbjct: 314 QNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNVS 373
Query: 166 TNNNLVRFYGSCRRKRDACKVFDDMCERSVVSWNVIITVCVENLWLGEAVGYFVKMKDLG 225
N+L+ Y C+ A +F + R++VSWN +I +N +A+ YF +M+
Sbjct: 374 VVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRT 433
Query: 226 FEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCAR 285
+PD T + V++A EL KW+H ++ N + TAL+DMYAKCGA+ AR
Sbjct: 434 VKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIAR 493
Query: 286 LLFSRMEEINVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAG 345
L+F M E +V TW+AMI G HG+ + ALELF M+ +I PN VTFL V+ AC+H+G
Sbjct: 494 LIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACSHSG 553
Query: 346 MVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMPFQPNPIVLRAL 405
+VE G + F+ M+ + I+ HY M D+L RAG L EA+ FIM MP +P V A+
Sbjct: 554 LVEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAM 613
Query: 406 LSASSIHDAKYQDGVGNXXXXXXXXXXPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNV 465
L A IH P V++AN Y MWEKV VR M
Sbjct: 614 LGACQIHK---NVNFAEKAAERLFELNPDDGGYHVLLANIYRAASMWEKVGQVRVSMLRQ 670
Query: 466 GLKKMKGMSWVELGGSIHRFYSGYDSQVELAGIYQILETLNLHMK 510
GL+K G S VE+ +H F+SG + + IY LE L H+K
Sbjct: 671 GLRKTPGCSMVEIKNEVHSFFSGSTAHPDSKKIYAFLEKLICHIK 715
|
|
| TAIR|locus:2011892 AT1G50270 "AT1G50270" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 725 (260.3 bits), Expect = 1.1e-71, P = 1.1e-71
Identities = 165/469 (35%), Positives = 251/469 (53%)
Query: 45 YQIHAQIQVSGLQNDAQILKELVRFCTLSSSKNLTYARSILCNYVNDSVPIPWNNLIRGY 104
+Q HA I GL +D + L+ SSS +A S L + D + W +I G+
Sbjct: 123 FQFHAHIVKFGLDSDPFVRNSLIS--GYSSSGLFDFA-SRLFDGAEDKDVVTWTAMIDGF 179
Query: 105 AWSDRPREAVWVFIDMKRRGIKPTEFTYPFVLKACAEISGLNEGMQVQANVTKSG-LDSD 163
+ EA+ F++MK+ G+ E T VLKA ++ + G V ++G + D
Sbjct: 180 VRNGSASEAMVYFVEMKKTGVAANEMTVVSVLKAAGKVEDVRFGRSVHGLYLETGRVKCD 239
Query: 164 VYTNNNLVRFYGSCRRKRDACKVFDDMCERSVVSWNVIITVCVENLWLGEAVGYFVKMKD 223
V+ ++LV YG C DA KVFD+M R+VV+W +I V++ + + F +M
Sbjct: 240 VFIGSSLVDMYGKCSCYDDAQKVFDEMPSRNVVTWTALIAGYVQSRCFDKGMLVFEEMLK 299
Query: 224 LGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGC 283
P+E T+ VLSAC +G L G+ VH +I+ +N GT LID+Y KCG +
Sbjct: 300 SDVAPNEKTLSSVLSACAHVGALHRGRRVHCYMIKNSIEINTTAGTTLIDLYVKCGCLEE 359
Query: 284 ARLLFSRMEEINVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNH 343
A L+F R+ E NV+TW+AMI G A HGYA +A +LF M +S +SPN VTF+ VL AC H
Sbjct: 360 AILVFERLHEKNVYTWTAMINGFAAHGYARDAFDLFYTMLSSHVSPNEVTFMAVLSACAH 419
Query: 344 AGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMPFQPNPIVLR 403
G+VE+G R F M+ ++P HY M D+ R G L+EA I MP +P +V
Sbjct: 420 GGLVEEGRRLFLSMKGRFNMEPKADHYACMVDLFGRKGLLEEAKALIERMPMEPTNVVWG 479
Query: 404 ALLSASSIHDAKYQDGVGNXXXXXXXXXXPRGSQNLVIVANKYAEVGMWEKVSNVRRFMK 463
AL + +H Y+ +G P S ++AN Y+E W++V+ VR+ MK
Sbjct: 480 ALFGSCLLHK-DYE--LGKYAASRVIKLQPSHSGRYTLLANLYSESQNWDEVARVRKQMK 536
Query: 464 NVGLKKMKGMSWVELGGSIHRFYSGYDSQ-VELAGIYQILETLNLHMKV 511
+ + K G SW+E+ G + F + D + +E +Y+ L+T+ + M++
Sbjct: 537 DQQVVKSPGFSWIEVKGKLCEFIAFDDKKPLESDDLYKTLDTVGVQMRL 585
|
|
| TAIR|locus:2054131 SLO2 "AT2G13600" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 575 (207.5 bits), Expect = 1.6e-71, Sum P(2) = 1.6e-71
Identities = 127/354 (35%), Positives = 185/354 (52%)
Query: 163 DVYTNNNLVRFYGSCRRKRDACKVFDDMCERSVVSWNVIITVCVENLWLGEAVGYFVKMK 222
+V +++ Y + A +F M ER+VVSWN +I +N EA+ F +K
Sbjct: 319 NVIAETSMISGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLK 378
Query: 223 DLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQ------LGTALIDMYA 276
P + +L AC +L L LG H+ +++ G +G +LIDMY
Sbjct: 379 RESVCPTHYSFANILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYV 438
Query: 277 KCGAVGCARLLFSRMEEINVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLG 336
KCG V L+F +M E + +W+AMI+G AQ+GY EALELF M S P+++T +G
Sbjct: 439 KCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLESGEKPDHITMIG 498
Query: 337 VLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMPFQ 396
VL AC HAG VE+G YF M G+ P+R HY M D+L RAG L+EA + I MP Q
Sbjct: 499 VLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSMIEEMPMQ 558
Query: 397 PNPIVLRALLSASSIHDAKYQDGVGNXXXXXXXXXXPRGSQNLVIVANKYAEVGMWEKVS 456
P+ ++ +LL+A +H +G P S V+++N YAE+G WE V
Sbjct: 559 PDSVIWGSLLAACKVHR---NITLGKYVAEKLLEVEPSNSGPYVLLSNMYAELGKWEDVM 615
Query: 457 NVRRFMKNVGLKKMKGMSWVELGGSIHRFYSGYDSQVELAGIYQILETLNLHMK 510
NVR+ M+ G+ K G SW+++ G H F S I+ +L+ L M+
Sbjct: 616 NVRKSMRKEGVTKQPGCSWIKIQGHDHVFMVKDKSHPRKKQIHSLLDILIAEMR 669
|
|
| TAIR|locus:2057574 AT2G33760 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 719 (258.2 bits), Expect = 4.8e-71, P = 4.8e-71
Identities = 171/482 (35%), Positives = 258/482 (53%)
Query: 42 KHLYQIHAQIQVSGLQNDAQILKELVRFCTLS-SSKNLTYARSILCNYVNDSVPIP---- 96
K L Q+HA + V+G +L +L+ TL+ S++ + Y + SVP+P
Sbjct: 23 KQLQQVHAHLIVTGYGRSRSLLTKLI---TLACSARAIAYTHLLFL-----SVPLPDDFL 74
Query: 97 WNNLIRGYAWSDRPREAVWVFIDMKRRGIKPTEFTYPFVLKACAEISGLNEGMQVQANVT 156
+N++I+ + P V + M + P+ +T+ V+K+CA++S L G V +
Sbjct: 75 FNSVIKSTSKLRLPLHCVAYYRRMLSSNVSPSNYTFTSVIKSCADLSALRIGKGVHCHAV 134
Query: 157 KSGLDSDVYTNNNLVRFYGSCRRKRDACKVFDDMCERSVVSWNVIITVCVENLWLGEAVG 216
SG D Y LV FY C A +VFD M E+S+V+WN +++ +N EA+
Sbjct: 135 VSGFGLDTYVQAALVTFYSKCGDMEGARQVFDRMPEKSIVAWNSLVSGFEQNGLADEAIQ 194
Query: 217 YFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYA 276
F +M++ GFEPD T + +LSAC + G +SLG WVH +I G LN +LGTALI++Y+
Sbjct: 195 VFYQMRESGFEPDSATFVSLLSACAQTGAVSLGSWVHQYIISEGLDLNVKLGTALINLYS 254
Query: 277 KCGAVGCARLLFSRMEEINVWTWSAMILGLAQHGYAEEALELFSNMKNS-SISPNYVTFL 335
+CG VG AR +F +M+E NV W+AMI HGY ++A+ELF+ M++ PN VTF+
Sbjct: 255 RCGDVGKAREVFDKMKETNVAAWTAMISAYGTHGYGQQAVELFNKMEDDCGPIPNNVTFV 314
Query: 336 GVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMPF 395
VL AC HAG+VE+G + M + + P H+ M D+L RAG L EAY FI +
Sbjct: 315 AVLSACAHAGLVEEGRSVYKRMTKSYRLIPGVEHHVCMVDMLGRAGFLDEAYKFIHQLDA 374
Query: 396 QPN---PIVLRALLSASSIHDAKYQDGVGNXXXXXXXXXXPRGSQNLVIVANKYAEVGMW 452
P + A+L A +H Y GV P + V+++N YA G
Sbjct: 375 TGKATAPALWTAMLGACKMH-RNYDLGV--EIAKRLIALEPDNPGHHVMLSNIYALSGKT 431
Query: 453 EKVSNVRRFMKNVGLKKMKGMSWVELGGSIHRFYSGYDSQVELAGIYQILETLNLHMKVL 512
++VS++R M L+K G S +E+ + F G +S E IY+ LETL K +
Sbjct: 432 DEVSHIRDGMMRNNLRKQVGYSVIEVENKTYMFSMGDESHQETGEIYRYLETLISRCKEI 491
Query: 513 NF 514
+
Sbjct: 492 GY 493
|
|
| TAIR|locus:2049562 AT2G01510 "AT2G01510" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 704 (252.9 bits), Expect = 1.8e-69, P = 1.8e-69
Identities = 170/483 (35%), Positives = 261/483 (54%)
Query: 29 RQCLS-FLKLCCSK-KHLYQIHAQIQVSGLQNDAQILKELVRFCTLSSSKNLTYARSILC 86
+Q LS L+ SK K L +IHA + +G +L +L+ L ++ YAR +
Sbjct: 10 KQMLSELLRASSSKPKQLKKIHAIVLRTGFSEKNSLLTQLLE--NLVVIGDMCYARQVFD 67
Query: 87 NYVNDSVPIPWNNLIRGYAWSDRPREAVWVFIDMKRRGIKPTEFTYPFVLKACAEISGLN 146
+ + WN L +GY + P E++ ++ M+ G++P EFTYPFV+KA +++ +
Sbjct: 68 EMHKPRIFL-WNTLFKGYVRNQLPFESLLLYKKMRDLGVRPDEFTYPFVVKAISQLGDFS 126
Query: 147 EGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKRDACKVFDDMCERSVVSWNVIITVCV 206
G + A+V K G LV Y A +F+ M + +V+WN + VCV
Sbjct: 127 CGFALHAHVVKYGFGCLGIVATELVMMYMKFGELSSAEFLFESMQVKDLVAWNAFLAVCV 186
Query: 207 ENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQ 266
+ A+ YF KM + D T++ +LSAC +LG+L +G+ ++ + + N
Sbjct: 187 QTGNSAIALEYFNKMCADAVQFDSFTVVSMLSACGQLGSLEIGEEIYDRARKEEIDCNII 246
Query: 267 LGTALIDMYAKCGAVGCARLLFSRMEEINVWTWSAMILGLAQHGYAEEALELFSNMKNSS 326
+ A +DM+ KCG AR+LF M++ NV +WS MI+G A +G + EAL LF+ M+N
Sbjct: 247 VENARLDMHLKCGNTEAARVLFEEMKQRNVVSWSTMIVGYAMNGDSREALTLFTTMQNEG 306
Query: 327 ISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVH--GIKPMRIHYHTMADILARAGHLK 384
+ PNYVTFLGVL AC+HAG+V +G RYF M + ++P + HY M D+L R+G L+
Sbjct: 307 LRPNYVTFLGVLSACSHAGLVNEGKRYFSLMVQSNDKNLEPRKEHYACMVDLLGRSGLLE 366
Query: 385 EAYTFIMNMPFQPNPIVLRALLSASSIHDAKYQDGV-GNXXXXXXXXXXPR-GSQNLVIV 442
EAY FI MP +P+ + ALL A ++H +D + G P GS + V++
Sbjct: 367 EAYEFIKKMPVEPDTGIWGALLGACAVH----RDMILGQKVADVLVETAPDIGSYH-VLL 421
Query: 443 ANKYAEVGMWEKVSNVRRFMKNVGLKKMKGMSWVELGGSIHRFYSGYDSQVELAGIYQIL 502
+N YA G W+ V VR M+ +G KK+ S VE G IH F G S + IY+ L
Sbjct: 422 SNIYAAAGKWDCVDKVRSKMRKLGTKKVAAYSSVEFEGKIHFFNRGDKSHPQSKAIYEKL 481
Query: 503 ETL 505
+ +
Sbjct: 482 DEI 484
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9ZQA1 | PP188_ARATH | No assigned EC number | 0.5773 | 0.9357 | 0.9600 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 514 | |||
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 6e-88 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-76 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-45 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 8e-39 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-32 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 6e-31 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-20 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 7e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 9e-09 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-07 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 9e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 1e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 3e-04 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 4e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 6e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 6e-04 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 287 bits (737), Expect = 6e-88
Identities = 145/420 (34%), Positives = 224/420 (53%), Gaps = 5/420 (1%)
Query: 95 IPWNNLIRGYAWSDRPREAVWVFIDMKRRGIKPTEFTYPFVLKACAEISGLNEGMQVQAN 154
+ W +I GY + P +A+ + M++ + P E T VL ACA + L+ G+++
Sbjct: 355 VSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHEL 414
Query: 155 VTKSGLDSDVYTNNNLVRFYGSCRRKRDACKVFDDMCERSVVSWNVIITVCVENLWLGEA 214
+ GL S V N L+ Y C+ A +VF ++ E+ V+SW II N EA
Sbjct: 415 AERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEA 474
Query: 215 VGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDM 274
+ +F +M L +P+ T++ LSAC +G L GK +H ++ G + L AL+D+
Sbjct: 475 LIFFRQML-LTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDL 533
Query: 275 YAKCGAVGCARLLFSRMEEINVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTF 334
Y +CG + A F+ E+ +V +W+ ++ G HG A+ELF+ M S ++P+ VTF
Sbjct: 534 YVRCGRMNYAWNQFNSHEK-DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTF 592
Query: 335 LGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP 394
+ +LCAC+ +GMV G YFH ME + I P HY + D+L RAG L EAY FI MP
Sbjct: 593 ISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP 652
Query: 395 FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEK 454
P+P V ALL+A IH +G + + EL+P +++ N YA+ G W++
Sbjct: 653 ITPDPAVWGALLNACRIH---RHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDE 709
Query: 455 VSNVRRFMKNVGLKKMKGMSWVELGGSIHRFYSGYDSQVELAGIYQILETLNLHMKVLNF 514
V+ VR+ M+ GL G SWVE+ G +H F + +S ++ I +LE MK
Sbjct: 710 VARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGL 769
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 253 bits (648), Expect = 2e-76
Identities = 132/409 (32%), Positives = 202/409 (49%), Gaps = 3/409 (0%)
Query: 97 WNNLIRGYAWSDRPREAVWVFIDMKRRGIKPTEFTYPFVLKACAEISGLNEGMQVQANVT 156
W +I G + REA +F +M G T+ +L+A A + G Q+ V
Sbjct: 192 WGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVL 251
Query: 157 KSGLDSDVYTNNNLVRFYGSCRRKRDACKVFDDMCERSVVSWNVIITVCVENLWLGEAVG 216
K+G+ D + + L+ Y C DA VFD M E++ V+WN ++ + + EA+
Sbjct: 252 KTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALC 311
Query: 217 YFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYA 276
+ +M+D G D+ T +++ + L L K H LI G L+ TAL+D+Y+
Sbjct: 312 LYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYS 371
Query: 277 KCGAVGCARLLFSRMEEINVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLG 336
K G + AR +F RM N+ +W+A+I G HG +A+E+F M ++PN+VTFL
Sbjct: 372 KWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLA 431
Query: 337 VLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMPFQ 396
VL AC ++G+ E G+ F M H IKP +HY M ++L R G L EAY I PF+
Sbjct: 432 VLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFK 491
Query: 397 PNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVS 456
P + ALL+A IH +G +L + P N V++ N Y G + +
Sbjct: 492 PTVNMWAALLTACRIHKNLE---LGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAA 548
Query: 457 NVRRFMKNVGLKKMKGMSWVELGGSIHRFYSGYDSQVELAGIYQILETL 505
V +K GL +W+E+ H F+SG + IYQ L+ L
Sbjct: 549 KVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDEL 597
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 170 bits (433), Expect = 1e-45
Identities = 95/298 (31%), Positives = 160/298 (53%), Gaps = 1/298 (0%)
Query: 97 WNNLIRGYAWSDRPREAVWVFIDMKRRGIKPTEFTYPFVLKACAEISGLNEGMQVQANVT 156
WN L+ GYA + EA+ ++ M G++P +T+P VL+ C I L G +V A+V
Sbjct: 155 WNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVV 214
Query: 157 KSGLDSDVYTNNNLVRFYGSCRRKRDACKVFDDMCERSVVSWNVIITVCVENLWLGEAVG 216
+ G + DV N L+ Y C A VFD M R +SWN +I+ EN E +
Sbjct: 215 RFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLE 274
Query: 217 YFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYA 276
F M++L +PD T+ V+SAC LG+ LG+ +H +++ G ++ + +LI MY
Sbjct: 275 LFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYL 334
Query: 277 KCGAVGCARLLFSRMEEINVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLG 336
G+ G A +FSRME + +W+AMI G ++G ++ALE ++ M+ ++SP+ +T
Sbjct: 335 SLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIAS 394
Query: 337 VLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP 394
VL AC G ++ G + HE+ G+ + + + ++ ++ + +A N+P
Sbjct: 395 VLSACACLGDLDVGVK-LHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP 451
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 150 bits (381), Expect = 8e-39
Identities = 83/266 (31%), Positives = 129/266 (48%), Gaps = 5/266 (1%)
Query: 89 VNDSVP----IPWNNLIRGYAWSDRPREAVWVFIDMKRRGIKPTEFTYPFVLKACAEISG 144
V D +P I WN +I GY + E + +F M+ + P T V+ AC +
Sbjct: 244 VFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGD 303
Query: 145 LNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKRDACKVFDDMCERSVVSWNVIITV 204
G ++ V K+G DV N+L++ Y S +A KVF M + VSW +I+
Sbjct: 304 ERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISG 363
Query: 205 CVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLN 264
+N +A+ + M+ PDE T+ VLSAC LG+L +G +H +G +
Sbjct: 364 YEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISY 423
Query: 265 CQLGTALIDMYAKCGAVGCARLLFSRMEEINVWTWSAMILGLAQHGYAEEALELFSNMKN 324
+ ALI+MY+KC + A +F + E +V +W+++I GL + EAL F M
Sbjct: 424 VVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQML- 482
Query: 325 SSISPNYVTFLGVLCACNHAGMVEDG 350
++ PN VT + L AC G + G
Sbjct: 483 LTLKPNSVTLIAALSACARIGALMCG 508
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 131 bits (331), Expect = 2e-32
Identities = 80/263 (30%), Positives = 132/263 (50%), Gaps = 12/263 (4%)
Query: 101 IRGYAWSDRPREAVWVFIDMKRRG-IKPTEFTYPFVLKACAEISGLNEGMQVQANVTKSG 159
I R REA+ +F ++ TY +++AC + + V +V SG
Sbjct: 94 IEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSG 153
Query: 160 LDSDVYTNNNLVRFYGSCRRKRDACKVFDDMCERSVVSWNVIITVCVENLWLGEAVGYFV 219
+ D Y N ++ + C DA ++FD+M ER++ SW II V+ EA F
Sbjct: 154 FEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFR 213
Query: 220 KMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCG 279
+M + G + + T +V+L A LG+ G+ +H +++ G V + + ALIDMY+KCG
Sbjct: 214 EMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCG 273
Query: 280 AVGCARLLFSRMEEINVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLC 339
+ AR +F M E W++M+ G A HGY+EEAL L+ M++S +S + TF ++
Sbjct: 274 DIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIR 333
Query: 340 ACN-----------HAGMVEDGY 351
+ HAG++ G+
Sbjct: 334 IFSRLALLEHAKQAHAGLIRTGF 356
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 127 bits (320), Expect = 6e-31
Identities = 81/299 (27%), Positives = 129/299 (43%), Gaps = 1/299 (0%)
Query: 98 NNLIRGYAWSDRPREAVWVFIDMKRRGIKPTEFTYPFVLKACAEISGLNEGMQVQANVTK 157
N+ +R + +A+ + M+ + E Y + + C + EG +V +
Sbjct: 55 NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALS 114
Query: 158 SGLDSDVYTNNNLVRFYGSCRRKRDACKVFDDMCERSVVSWNVIITVCVENLWLGEAVGY 217
S V N ++ + A VF M ER + SWNV++ + + EA+
Sbjct: 115 SHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCL 174
Query: 218 FVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAK 277
+ +M G PD T VL C + +L+ G+ VH ++ G L+ + ALI MY K
Sbjct: 175 YHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVK 234
Query: 278 CGAVGCARLLFSRMEEINVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGV 337
CG V ARL+F RM + +W+AMI G ++G E LELF M+ S+ P+ +T V
Sbjct: 235 CGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSV 294
Query: 338 LCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMPFQ 396
+ AC G G R H G +++ + G EA M +
Sbjct: 295 ISACELLGDERLG-REMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETK 352
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 94.6 bits (235), Expect = 2e-20
Identities = 50/174 (28%), Positives = 84/174 (48%), Gaps = 4/174 (2%)
Query: 89 VNDSVP----IPWNNLIRGYAWSDRPREAVWVFIDMKRRGIKPTEFTYPFVLKACAEISG 144
V D +P + WN+++ GYA EA+ ++ +M+ G+ +FT+ +++ + ++
Sbjct: 281 VFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLAL 340
Query: 145 LNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKRDACKVFDDMCERSVVSWNVIITV 204
L Q A + ++G D+ N LV Y R DA VFD M ++++SWN +I
Sbjct: 341 LEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAG 400
Query: 205 CVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIE 258
+ +AV F +M G P+ T L VLSAC G G + + E
Sbjct: 401 YGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSE 454
|
Length = 697 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 64.5 bits (157), Expect = 7e-11
Identities = 49/166 (29%), Positives = 76/166 (45%), Gaps = 9/166 (5%)
Query: 254 LQLI-ERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRME----EINVWTWSAMILGLAQ 308
L+L+ E G +C+L T LI AK G V +F M E NV T+ A+I G A+
Sbjct: 460 LRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCAR 519
Query: 309 HGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEME-HVHGIKPMR 367
G +A + M++ ++ P+ V F ++ AC +G V+ + EM+ H I P
Sbjct: 520 AGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDH 579
Query: 368 IHYHTMADILARAGHL---KEAYTFIMNMPFQPNPIVLRALLSASS 410
I + A AG + KE Y I + P V +++ S
Sbjct: 580 ITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCS 625
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 50.9 bits (123), Expect = 9e-09
Identities = 17/44 (38%), Positives = 26/44 (59%)
Query: 97 WNNLIRGYAWSDRPREAVWVFIDMKRRGIKPTEFTYPFVLKACA 140
+N LI GY + EA+ +F +MK+RGIKP +TY ++
Sbjct: 6 YNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 1e-07
Identities = 67/300 (22%), Positives = 133/300 (44%), Gaps = 24/300 (8%)
Query: 127 PTEFTYPFVLKACAEISGLNEGMQVQANVTKSGLDSD--VYTNNNLVRFYGSCRR--KRD 182
PT T+ ++ CA ++ ++V V ++GL +D +YT +C + K D
Sbjct: 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTT-----LISTCAKSGKVD 489
Query: 183 AC-KVFDDM----CERSVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVL 237
A +VF +M E +V ++ +I C + +A G + M+ +PD ++
Sbjct: 490 AMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALI 549
Query: 238 SACTELGNLSLGKWVHLQLIERGTVLNCQLGT--ALIDMYAKCGAVGCARLLFSRMEEIN 295
SAC + G + V ++ ++ T AL+ A G V A+ ++ + E N
Sbjct: 550 SACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYN 609
Query: 296 V----WTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGY 351
+ ++ + +Q G + AL ++ +MK + P+ V F ++ HAG ++ +
Sbjct: 610 IKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAF 669
Query: 352 RYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEA---YTFIMNMPFQPNPIVLRALLSA 408
+ GIK + Y ++ + A + K+A Y I ++ +P + AL++A
Sbjct: 670 EILQDAR-KQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITA 728
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 47.4 bits (114), Expect = 2e-07
Identities = 17/40 (42%), Positives = 25/40 (62%)
Query: 295 NVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTF 334
+V T++ +I G + G EEAL+LF+ MK I PN T+
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTY 41
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 9e-06
Identities = 60/280 (21%), Positives = 106/280 (37%), Gaps = 48/280 (17%)
Query: 97 WNNLIRGYAWSDRPREAVWVFIDMKRRG--IKPTEFTYPFVLKACAEISGLNEGMQVQAN 154
+N LI S A V +MK I P T ++KACA ++ +V
Sbjct: 545 FNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQM 604
Query: 155 VTKSGLDS--DVYTNNNLVRFYGSCRRKRD---ACKVFDDMCERSV----VSWNVIITVC 205
+ + + +VYT V SC +K D A ++DDM ++ V V ++ ++ V
Sbjct: 605 IHEYNIKGTPEVYTI--AVN---SCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVA 659
Query: 206 VENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNC 265
L +A + G + + ++ AC+ N W ++
Sbjct: 660 GHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKN-----W------KKA----- 703
Query: 266 QLGTALIDMYAKCGAVGCARLLFSRMEEINVWTWSAMILGLAQHGYAEEALELFSNMKNS 325
+++Y ++ V T +A+I L + +ALE+ S MK
Sbjct: 704 ------LELYEDIKSIKL---------RPTVSTMNALITALCEGNQLPKALEVLSEMKRL 748
Query: 326 SISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKP 365
+ PN +T+ +L A + G + + GIKP
Sbjct: 749 GLCPNTITYSILLVASERKDDADVGLDLLSQAK-EDGIKP 787
|
Length = 1060 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 1e-04
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 97 WNNLIRGYAWSDRPREAVWVFIDMKRRGI 125
+N+LI GY + + EA+ +F +MK +G+
Sbjct: 3 YNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 3e-04
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 298 TWSAMILGLAQHGYAEEALELFSNMKNSSI 327
T++++I G + G EEALELF MK +
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 4e-04
Identities = 49/205 (23%), Positives = 95/205 (46%), Gaps = 20/205 (9%)
Query: 113 AVWVFIDMKRRGIKPTEFTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVR 172
A+ ++ DMK++G+KP E + ++ L++ ++ + K G+ + ++L+
Sbjct: 633 ALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLM- 691
Query: 173 FYGSCRRKRD---ACKVFDDMCERS------VVSWNVIITVCVENLWLGEAVGYFVKMKD 223
G+C ++ A ++++D+ +S V + N +IT E L +A+ +MK
Sbjct: 692 --GACSNAKNWKKALELYEDI--KSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKR 747
Query: 224 LGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLN---CQLGTAL-IDMYAKCG 279
LG P+ T ++L A + +G + Q E G N C+ T L + + K
Sbjct: 748 LGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKAC 807
Query: 280 AVGCARLLF--SRMEEINVWTWSAM 302
A+G + F R + N WT A+
Sbjct: 808 ALGEPVVSFDSGRPQIENKWTSWAL 832
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 6e-04
Identities = 12/47 (25%), Positives = 24/47 (51%)
Query: 194 SVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSAC 240
VV++N +I + + EA+ F +MK G +P+ T +++
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 37.1 bits (87), Expect = 6e-04
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 298 TWSAMILGLAQHGYAEEALELFSNMKNSSISPN 330
T++ +I GL + G EEALELF MK I P+
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 514 | |||
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.97 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.97 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.9 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.9 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.89 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.88 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.88 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.87 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.87 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.87 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.86 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.85 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.84 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.84 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.82 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.81 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.81 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.78 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.77 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.71 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.7 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.7 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.68 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.67 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.66 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.66 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.62 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.59 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.59 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.59 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.58 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.57 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.56 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.55 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.54 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.53 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.51 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.51 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.5 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.49 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.47 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.47 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.47 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.45 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.44 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.44 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.39 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.38 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.37 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.33 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.33 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.31 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.31 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.29 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.28 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.25 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.25 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.21 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.21 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.19 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.18 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.18 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.17 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.17 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.16 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.15 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.14 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.09 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.08 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.06 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.06 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.05 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.03 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.01 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.0 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.99 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.99 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.98 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.98 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.93 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.93 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.89 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.87 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.86 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.86 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.86 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.84 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.83 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.83 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.79 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.76 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.75 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.73 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.69 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.66 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.66 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.63 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.62 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.6 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.59 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.59 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.59 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.56 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.55 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.53 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.51 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.5 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.47 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.46 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.46 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.46 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.42 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.41 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.4 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.39 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.37 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.36 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.36 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.34 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.33 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.31 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.31 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.29 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.27 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.26 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.26 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.23 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.2 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.19 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.17 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.17 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.14 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.1 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.1 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.08 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.01 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.98 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.93 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.92 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.91 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.91 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.85 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.83 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.79 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.79 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.78 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.78 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.76 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.71 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.68 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.67 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.63 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.61 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.58 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.57 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.56 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.56 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.54 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.53 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.51 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.5 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.45 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.43 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.42 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.42 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.41 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.38 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.37 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.36 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.36 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.35 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.34 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.33 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.33 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.32 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.32 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.31 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.3 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.27 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.24 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 97.22 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.21 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.2 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.2 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.2 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.19 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.12 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.1 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.09 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.07 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.03 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.03 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.03 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.02 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.0 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.99 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.95 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.86 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 96.86 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 96.85 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.82 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.81 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.72 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.72 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.69 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.55 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.55 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.55 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.54 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 96.46 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.39 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.35 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.19 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.05 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.97 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.88 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.86 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 95.81 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.73 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.66 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 95.59 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.54 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 95.49 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 95.47 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.4 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.39 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 95.34 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 95.33 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 95.29 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.28 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.25 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.25 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 95.24 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 95.22 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.12 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 95.11 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 95.08 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 95.06 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.04 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 95.01 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 94.96 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 94.71 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.55 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 94.54 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 94.43 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 94.42 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.32 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 94.29 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 94.28 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.23 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 94.02 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 93.98 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 93.85 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 93.54 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 93.46 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 93.44 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 93.42 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 93.41 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 93.36 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 93.19 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 93.19 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 92.92 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 92.85 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 92.84 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 92.8 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 92.67 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 92.66 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 92.62 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 92.59 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 92.34 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 92.02 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 91.97 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 91.9 | |
| PRK09687 | 280 | putative lyase; Provisional | 91.9 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 91.86 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 91.73 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 91.61 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 91.21 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 91.16 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 91.11 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 90.88 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 90.87 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 90.55 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 90.51 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 90.38 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 90.37 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 89.93 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 89.64 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 89.58 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 89.54 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 88.9 | |
| PRK09687 | 280 | putative lyase; Provisional | 88.85 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 88.81 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 88.64 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 88.56 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 88.5 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 88.19 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 88.19 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 87.95 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 87.84 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 87.83 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 87.49 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 87.46 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 87.33 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 87.27 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 86.98 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 86.79 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 86.57 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 86.24 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 86.13 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 85.97 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 85.93 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 85.65 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 85.47 | |
| PF09477 | 116 | Type_III_YscG: Bacterial type II secretion system | 84.67 | |
| PF13762 | 145 | MNE1: Mitochondrial splicing apparatus component | 84.44 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 83.96 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 83.59 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 83.54 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 83.46 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 82.9 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 82.88 | |
| KOG2063 | 877 | consensus Vacuolar assembly/sorting proteins VPS39 | 82.41 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 82.38 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 81.78 | |
| PRK12798 | 421 | chemotaxis protein; Reviewed | 81.5 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 81.45 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 81.31 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 81.23 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 80.98 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 80.37 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 80.2 |
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-74 Score=597.23 Aligned_cols=484 Identities=29% Similarity=0.485 Sum_probs=473.1
Q ss_pred cchhhhHHHHHHHhhc---ChhHHHHHHHHHHHhCCCCChHHHHHHHHhcccCCCCChHHHHHHHcccCCCCCcccHHHH
Q 046312 24 LLSKARQCLSFLKLCC---SKKHLYQIHAQIQVSGLQNDAQILKELVRFCTLSSSKNLTYARSILCNYVNDSVPIPWNNL 100 (514)
Q Consensus 24 ~~~~~~~~~~ll~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l 100 (514)
..|+..||.+++.+|. +.+.+.++|..|.+.|+.||..+++.++.+|+ +.|++++|.++|++|+ .||.++||.+
T Consensus 119 ~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~--k~g~~~~A~~lf~~m~-~~~~~t~n~l 195 (697)
T PLN03081 119 FTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHV--KCGMLIDARRLFDEMP-ERNLASWGTI 195 (697)
T ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHh--cCCCHHHHHHHHhcCC-CCCeeeHHHH
Confidence 3577889999999985 45667899999999999999999999999999 9999999999999999 8999999999
Q ss_pred HHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCH
Q 046312 101 IRGYAWSDRPREAVWVFIDMKRRGIKPTEFTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRK 180 (514)
Q Consensus 101 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 180 (514)
|.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|++.|+.+.+.+++..+.+.|+.||..+|++|+++|+++|++
T Consensus 196 i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~ 275 (697)
T PLN03081 196 IGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDI 275 (697)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhC
Q 046312 181 RDACKVFDDMCERSVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERG 260 (514)
Q Consensus 181 ~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 260 (514)
++|.++|++|.++|+.+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|
T Consensus 276 ~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g 355 (697)
T PLN03081 276 EDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTG 355 (697)
T ss_pred HHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 046312 261 TVLNCQLGTALIDMYAKCGAVGCARLLFSRMEEINVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCA 340 (514)
Q Consensus 261 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 340 (514)
+.||..+|++|+++|++.|++++|.++|++|.++|..+||+||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+
T Consensus 356 ~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a 435 (697)
T PLN03081 356 FPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSA 435 (697)
T ss_pred CCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCcchH
Q 046312 341 CNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMPFQPNPIVLRALLSASSIHDAKYQDGV 420 (514)
Q Consensus 341 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~ 420 (514)
|++.|.+++|.++|+.|.+.+|+.|+..+|+.++++|++.|++++|.+++++|+..|+..+|++|+.+|..+|+ ++.
T Consensus 436 ~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~---~~~ 512 (697)
T PLN03081 436 CRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKN---LEL 512 (697)
T ss_pred HhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC---cHH
Confidence 99999999999999999987799999999999999999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCceeEEEECCeEEEEEecccCCcChHHHHH
Q 046312 421 GNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNVGLKKMKGMSWVELGGSIHRFYSGYDSQVELAGIYQ 500 (514)
Q Consensus 421 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 500 (514)
|..+.+.+.+++|++...|..|+++|++.|++++|.+++++|+++|+.+.|+++||++.+.++.++.+...|++.+++++
T Consensus 513 a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~ 592 (697)
T PLN03081 513 GRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQ 592 (697)
T ss_pred HHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcC
Q 046312 501 ILETLNLHMKVLN 513 (514)
Q Consensus 501 ~~~~m~~~~~~~~ 513 (514)
.++++..+|++.+
T Consensus 593 ~l~~l~~~~~~~g 605 (697)
T PLN03081 593 KLDELMKEISEYG 605 (697)
T ss_pred HHHHHHHHHHHcC
Confidence 9999999998865
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-72 Score=591.52 Aligned_cols=484 Identities=31% Similarity=0.568 Sum_probs=472.7
Q ss_pred cccchhhhHHHHHHHhhc---ChhHHHHHHHHHHHhCCCCChHHHHHHHHhcccCCCCChHHHHHHHcccCCCCCcccHH
Q 046312 22 SDLLSKARQCLSFLKLCC---SKKHLYQIHAQIQVSGLQNDAQILKELVRFCTLSSSKNLTYARSILCNYVNDSVPIPWN 98 (514)
Q Consensus 22 ~~~~~~~~~~~~ll~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 98 (514)
.+..|+..||..++.+|. +.+.++++|..|.+.|+.||..+||.|+.+|+ +.|++++|.++|++|. .||+.+||
T Consensus 282 ~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~--k~g~~~~A~~vf~~m~-~~d~~s~n 358 (857)
T PLN03077 282 LSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYL--SLGSWGEAEKVFSRME-TKDAVSWT 358 (857)
T ss_pred cCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHH--hcCCHHHHHHHHhhCC-CCCeeeHH
Confidence 456899999999999985 56778999999999999999999999999999 9999999999999999 99999999
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCC
Q 046312 99 NLIRGYAWSDRPREAVWVFIDMKRRGIKPTEFTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCR 178 (514)
Q Consensus 99 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 178 (514)
.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+.|+.|+..+|+.|+++|+++|
T Consensus 359 ~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g 438 (857)
T PLN03077 359 AMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCK 438 (857)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHhhccCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 046312 179 RKRDACKVFDDMCERSVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIE 258 (514)
Q Consensus 179 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 258 (514)
++++|.++|++|.++|..+||++|.+|++.|+.++|+.+|++|.. ++.||..||+.++.+|++.|+++.+.+++..+.+
T Consensus 439 ~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~ 517 (857)
T PLN03077 439 CIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLR 517 (857)
T ss_pred CHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHH
Confidence 999999999999999999999999999999999999999999986 5999999999999999999999999999999999
Q ss_pred hCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 046312 259 RGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEEINVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVL 338 (514)
Q Consensus 259 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll 338 (514)
.|+.++..++++|+++|++.|++++|.++|+.+ ++|..+|+++|.+|++.|+.++|+++|++|.+.|+.||..||+.++
T Consensus 518 ~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll 596 (857)
T PLN03077 518 TGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLL 596 (857)
T ss_pred hCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHH
Confidence 999999999999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred HHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCcc
Q 046312 339 CACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMPFQPNPIVLRALLSASSIHDAKYQD 418 (514)
Q Consensus 339 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~ 418 (514)
.+|++.|++++|.++|+.|.+.+|+.|+..+|+.++++|++.|++++|.+++++|+.+||..+|++|+.+|..+++ .
T Consensus 597 ~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~---~ 673 (857)
T PLN03077 597 CACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRH---V 673 (857)
T ss_pred HHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC---h
Confidence 9999999999999999999966799999999999999999999999999999999999999999999999999999 9
Q ss_pred hHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCceeEEEECCeEEEEEecccCCcChHHH
Q 046312 419 GVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNVGLKKMKGMSWVELGGSIHRFYSGYDSQVELAGI 498 (514)
Q Consensus 419 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 498 (514)
+.++.+.+++.+++|+++..|..|.+.|...|+|++|.++.+.|+++|+.+.||++||++.+.++.++.+...|++.+++
T Consensus 674 e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i 753 (857)
T PLN03077 674 ELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEI 753 (857)
T ss_pred HHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcC
Q 046312 499 YQILETLNLHMKVLN 513 (514)
Q Consensus 499 ~~~~~~m~~~~~~~~ 513 (514)
+..++++.++|++.+
T Consensus 754 ~~~l~~l~~~~~~~g 768 (857)
T PLN03077 754 NTVLEGFYEKMKASG 768 (857)
T ss_pred HHHHHHHHHHHHhCC
Confidence 999999999998765
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-66 Score=546.63 Aligned_cols=466 Identities=23% Similarity=0.351 Sum_probs=446.9
Q ss_pred cccchhhhHHHHHHHhhcC---hhHHHHHHHHHHHhCCCCChHHHHHHHHhcccCCCCChHHHHHHHcccCCCCCcccHH
Q 046312 22 SDLLSKARQCLSFLKLCCS---KKHLYQIHAQIQVSGLQNDAQILKELVRFCTLSSSKNLTYARSILCNYVNDSVPIPWN 98 (514)
Q Consensus 22 ~~~~~~~~~~~~ll~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 98 (514)
.+..|+..||..++++|+. ...++++|..|.+.|+.||..++|.||.+|+ +.|++++|.++|++|+ .+|+++||
T Consensus 181 ~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~--k~g~~~~A~~lf~~m~-~~d~~s~n 257 (857)
T PLN03077 181 AGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYV--KCGDVVSARLVFDRMP-RRDCISWN 257 (857)
T ss_pred cCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHh--cCCCHHHHHHHHhcCC-CCCcchhH
Confidence 3577999999999999964 5667899999999999999999999999999 9999999999999999 99999999
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCC
Q 046312 99 NLIRGYAWSDRPREAVWVFIDMKRRGIKPTEFTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCR 178 (514)
Q Consensus 99 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 178 (514)
.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.+++..|.+.|+.||..+|++|+.+|++.|
T Consensus 258 ~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g 337 (857)
T PLN03077 258 AMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLG 337 (857)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHhhccCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 046312 179 RKRDACKVFDDMCERSVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIE 258 (514)
Q Consensus 179 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 258 (514)
++++|.++|++|.++|..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+
T Consensus 338 ~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~ 417 (857)
T PLN03077 338 SWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAER 417 (857)
T ss_pred CHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 046312 259 RGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEEINVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVL 338 (514)
Q Consensus 259 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll 338 (514)
.|+.|+..+|++|+++|++.|++++|.++|++|.++|..+|+.+|.+|++.|+.++|+.+|++|.. +++||..||..++
T Consensus 418 ~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL 496 (857)
T PLN03077 418 KGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAAL 496 (857)
T ss_pred hCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999986 5999999999999
Q ss_pred HHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCcc
Q 046312 339 CACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMPFQPNPIVLRALLSASSIHDAKYQD 418 (514)
Q Consensus 339 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~ 418 (514)
.+|++.|+++.+.+++..+.+. |+.+|..++++|+++|+++|++++|.++|+++ .||..+|++++.+|.++|+ .
T Consensus 497 ~a~~~~g~l~~~~~i~~~~~~~-g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~---~ 570 (857)
T PLN03077 497 SACARIGALMCGKEIHAHVLRT-GIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGK---G 570 (857)
T ss_pred HHHhhhchHHHhHHHHHHHHHh-CCCccceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCC---H
Confidence 9999999999999999999996 99999999999999999999999999999999 6999999999999999999 9
Q ss_pred hHHHHHHHHHHhcC--CCCCchHHHHHHHHHhcCCHHHHHHHHHHHH-hCCCCCCCceeEEEECCeEEEEEecccCCcCh
Q 046312 419 GVGNEVRRRLLELE--PRGSQNLVIVANKYAEVGMWEKVSNVRRFMK-NVGLKKMKGMSWVELGGSIHRFYSGYDSQVEL 495 (514)
Q Consensus 419 ~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (514)
++|.++++++.+.+ |+ ..+|..++.+|.+.|++++|.++|++|. +.|+.|....+ +.++.++.+.|+.
T Consensus 571 ~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y--------~~lv~~l~r~G~~ 641 (857)
T PLN03077 571 SMAVELFNRMVESGVNPD-EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHY--------ACVVDLLGRAGKL 641 (857)
T ss_pred HHHHHHHHHHHHcCCCCC-cccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHH--------HHHHHHHHhCCCH
Confidence 99999999998865 65 5689999999999999999999999999 78887765443 4688999999999
Q ss_pred HHHHHHHHHHH
Q 046312 496 AGIYQILETLN 506 (514)
Q Consensus 496 ~~a~~~~~~m~ 506 (514)
++|.+++++|.
T Consensus 642 ~eA~~~~~~m~ 652 (857)
T PLN03077 642 TEAYNFINKMP 652 (857)
T ss_pred HHHHHHHHHCC
Confidence 99999999983
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-62 Score=508.16 Aligned_cols=463 Identities=16% Similarity=0.203 Sum_probs=418.9
Q ss_pred hhHHHHHHHhh---cChhHHHHHHHHHHHhCC-CCChHHHHHHHHhcccCCCCChHHHHHHHcccCCCCCcccHHHHHHH
Q 046312 28 ARQCLSFLKLC---CSKKHLYQIHAQIQVSGL-QNDAQILKELVRFCTLSSSKNLTYARSILCNYVNDSVPIPWNNLIRG 103 (514)
Q Consensus 28 ~~~~~~ll~~~---~~~~~~~~~~~~~~~~g~-~~~~~~~~~ll~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~ 103 (514)
...+..++..+ ++..++.++++.|.+.|+ .++..+++.++..|. +.|.+++|..+|+.|+ .||..+|+.+|.+
T Consensus 370 ~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~--~~g~~~eAl~lf~~M~-~pd~~Tyn~LL~a 446 (1060)
T PLN03218 370 SPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACK--KQRAVKEAFRFAKLIR-NPTLSTFNMLMSV 446 (1060)
T ss_pred chHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHH--HCCCHHHHHHHHHHcC-CCCHHHHHHHHHH
Confidence 34455555555 789999999999999995 567888899999999 9999999999999999 7999999999999
Q ss_pred HHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCHHHH
Q 046312 104 YAWSDRPREAVWVFIDMKRRGIKPTEFTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKRDA 183 (514)
Q Consensus 104 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A 183 (514)
|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|++++|
T Consensus 447 ~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeA 526 (1060)
T PLN03218 447 CASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKA 526 (1060)
T ss_pred HHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcc----CCCChhhHHHHHHHHHhCCChhHHHHHHHHHHH--CCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHH
Q 046312 184 CKVFDDM----CERSVVSWNVIITVCVENLWLGEAVGYFVKMKD--LGFEPDETTMLVVLSACTELGNLSLGKWVHLQLI 257 (514)
Q Consensus 184 ~~~~~~~----~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 257 (514)
.++|++| ..||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|++++|.++|+.|.
T Consensus 527 l~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~ 606 (1060)
T PLN03218 527 FGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIH 606 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999999 568999999999999999999999999999987 5799999999999999999999999999999999
Q ss_pred HhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCc----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH
Q 046312 258 ERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEE----INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVT 333 (514)
Q Consensus 258 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 333 (514)
+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+ ||..+|+.++.+|++.|++++|.+++++|.+.|+.||..+
T Consensus 607 e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~t 686 (1060)
T PLN03218 607 EYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVS 686 (1060)
T ss_pred HcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 999999999999999999999999999999999985 8999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC---CCCCHHHHHHHHHHHH
Q 046312 334 FLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP---FQPNPIVLRALLSASS 410 (514)
Q Consensus 334 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~p~~~~~~~l~~~~~ 410 (514)
|+.+|.+|++.|++++|.++|++|.+. |+.||..+|+.+|.+|++.|++++|.++|++|. +.||..+|+.++.+|+
T Consensus 687 ynsLI~ay~k~G~~eeA~~lf~eM~~~-g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~ 765 (1060)
T PLN03218 687 YSSLMGACSNAKNWKKALELYEDIKSI-KLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASE 765 (1060)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 999999999999999999999999986 999999999999999999999999999999995 8899999999999999
Q ss_pred hcCCCCcchHHHHHHHHHHhcCC-CCCchHHHHHHHHH----hcC-------------------CHHHHHHHHHHHHhCC
Q 046312 411 IHDAKYQDGVGNEVRRRLLELEP-RGSQNLVIVANKYA----EVG-------------------MWEKVSNVRRFMKNVG 466 (514)
Q Consensus 411 ~~~~~~~~~~a~~~~~~~~~~~p-~~~~~~~~l~~~~~----~~g-------------------~~~~A~~~~~~m~~~~ 466 (514)
+.|+ ++.|.++++.+.+.+. .+..+|..++..|. +++ ..++|..+|++|.+.|
T Consensus 766 k~G~---le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~G 842 (1060)
T PLN03218 766 RKDD---ADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAG 842 (1060)
T ss_pred HCCC---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCC
Confidence 9999 9999999999998762 23557888776543 222 2367999999999999
Q ss_pred CCCCCceeEEEECCeEEEEEecccCCcChHHHHHHHHHH
Q 046312 467 LKKMKGMSWVELGGSIHRFYSGYDSQVELAGIYQILETL 505 (514)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m 505 (514)
+.|+..+. +.++.++...+....+..++++|
T Consensus 843 i~Pd~~T~--------~~vL~cl~~~~~~~~~~~m~~~m 873 (1060)
T PLN03218 843 TLPTMEVL--------SQVLGCLQLPHDATLRNRLIENL 873 (1060)
T ss_pred CCCCHHHH--------HHHHHHhcccccHHHHHHHHHHh
Confidence 98775433 23334444444444444444443
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-61 Score=497.66 Aligned_cols=439 Identities=18% Similarity=0.248 Sum_probs=403.9
Q ss_pred hhhhHHHHHHHhh---cChhHHHHHHHHHHHhCCCCChHHHHHHHHhcccCCCCChHHHHHHHcccCC---CCCcccHHH
Q 046312 26 SKARQCLSFLKLC---CSKKHLYQIHAQIQVSGLQNDAQILKELVRFCTLSSSKNLTYARSILCNYVN---DSVPIPWNN 99 (514)
Q Consensus 26 ~~~~~~~~ll~~~---~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~ 99 (514)
|+..||..++++| ++...+..+++.|.+.|+.||..+|+.||.+|+ +.|++++|.++|++|.. .||..+|+.
T Consensus 435 pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~--k~G~vd~A~~vf~eM~~~Gv~PdvvTyna 512 (1060)
T PLN03218 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCA--KSGKVDAMFEVFHEMVNAGVEANVHTFGA 512 (1060)
T ss_pred CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--hCcCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 7888999999998 467888999999999999999999999999999 99999999999999974 589999999
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHH--hCCCCCcchHHHHHHHHHcC
Q 046312 100 LIRGYAWSDRPREAVWVFIDMKRRGIKPTEFTYPFVLKACAEISGLNEGMQVQANVTK--SGLDSDVYTNNNLVRFYGSC 177 (514)
Q Consensus 100 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~~~li~~~~~~ 177 (514)
+|.+|++.|++++|+++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|+++|.+|++.
T Consensus 513 LI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~ 592 (1060)
T PLN03218 513 LIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANA 592 (1060)
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHC
Confidence 9999999999999999999999999999999999999999999999999999999986 57899999999999999999
Q ss_pred CCHHHHHHHhhcc----CCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHH
Q 046312 178 RRKRDACKVFDDM----CERSVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVH 253 (514)
Q Consensus 178 ~~~~~A~~~~~~~----~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 253 (514)
|++++|.++|++| ..++..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++
T Consensus 593 G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~ 672 (1060)
T PLN03218 593 GQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEIL 672 (1060)
T ss_pred CCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 9999999999999 456789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC----cCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 046312 254 LQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRME----EINVWTWSAMILGLAQHGYAEEALELFSNMKNSSISP 329 (514)
Q Consensus 254 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 329 (514)
++|.+.|+.|+..+|+++|.+|++.|++++|.++|++|. .||..+|+.||.+|++.|++++|.++|++|.+.|+.|
T Consensus 673 ~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~P 752 (1060)
T PLN03218 673 QDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCP 752 (1060)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 999999999999999999999999999999999999996 4999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHh----c-------------------CCHHHH
Q 046312 330 NYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILAR----A-------------------GHLKEA 386 (514)
Q Consensus 330 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~-------------------g~~~~A 386 (514)
|..||+.++.+|++.|+++.|.+++++|.+. |+.||..+|+.++..|.+ + +..++|
T Consensus 753 d~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~-Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~A 831 (1060)
T PLN03218 753 NTITYSILLVASERKDDADVGLDLLSQAKED-GIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWA 831 (1060)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHH
Confidence 9999999999999999999999999999996 999999999999876432 2 224679
Q ss_pred HHHHHhCC---CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcC-CCCCchHHHHHHHHHhcCCHHHHHHHHHHH
Q 046312 387 YTFIMNMP---FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELE-PRGSQNLVIVANKYAEVGMWEKVSNVRRFM 462 (514)
Q Consensus 387 ~~~~~~~~---~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 462 (514)
..+|++|. +.||..||+.++.+++..+. ...+..+++.+.... +.+..+|..|++++.+. .++|..++++|
T Consensus 832 l~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~---~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em 906 (1060)
T PLN03218 832 LMVYRETISAGTLPTMEVLSQVLGCLQLPHD---ATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEA 906 (1060)
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHhccccc---HHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHH
Confidence 99999996 89999999999977777777 777766666554322 34456899999998432 46899999999
Q ss_pred HhCCCCCCCc
Q 046312 463 KNVGLKKMKG 472 (514)
Q Consensus 463 ~~~~~~~~~~ 472 (514)
...|+.|...
T Consensus 907 ~~~Gi~p~~~ 916 (1060)
T PLN03218 907 ASLGVVPSVS 916 (1060)
T ss_pred HHcCCCCCcc
Confidence 9999987765
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-57 Score=465.57 Aligned_cols=451 Identities=12% Similarity=0.143 Sum_probs=412.8
Q ss_pred HHHHHHH---hhcChhHHHHHHHHHHHhC-CCCChHHHHHHHHhcccCCCCChHHHHHHHcccCC---CCCcccHHHHHH
Q 046312 30 QCLSFLK---LCCSKKHLYQIHAQIQVSG-LQNDAQILKELVRFCTLSSSKNLTYARSILCNYVN---DSVPIPWNNLIR 102 (514)
Q Consensus 30 ~~~~ll~---~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~ll~~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~li~ 102 (514)
++.+++. ..++..++..++..|...+ +.||..+|+.++.+|+ +.++++.|..++..|.. .||+.+||.++.
T Consensus 89 ~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~--~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~ 166 (697)
T PLN03081 89 SLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACI--ALKSIRCVKAVYWHVESSGFEPDQYMMNRVLL 166 (697)
T ss_pred eHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 4444444 4577899999999998765 8899999999999999 99999999999998853 688999999999
Q ss_pred HHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCHHH
Q 046312 103 GYAWSDRPREAVWVFIDMKRRGIKPTEFTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKRD 182 (514)
Q Consensus 103 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 182 (514)
+|++.|+++.|.++|++|. .||..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|+.++.+|++.|..+.
T Consensus 167 ~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~ 242 (697)
T PLN03081 167 MHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARA 242 (697)
T ss_pred HHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHH
Confidence 9999999999999999995 489999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcc----CCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 046312 183 ACKVFDDM----CERSVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIE 258 (514)
Q Consensus 183 A~~~~~~~----~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 258 (514)
+.+++..+ ..+|..+||+||.+|++.|++++|.++|++|. .+|..+|+.++.+|++.|+.++|..+|++|.+
T Consensus 243 ~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~ 318 (697)
T PLN03081 243 GQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRD 318 (697)
T ss_pred HHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 99998777 56799999999999999999999999999995 57999999999999999999999999999999
Q ss_pred hCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCc----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH
Q 046312 259 RGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEE----INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTF 334 (514)
Q Consensus 259 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 334 (514)
.|+.||..+|++++.+|++.|++++|.+++..|.+ +|..+|++|+.+|++.|++++|.++|++|. .||..+|
T Consensus 319 ~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~ 394 (697)
T PLN03081 319 SGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISW 394 (697)
T ss_pred cCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeH
Confidence 99999999999999999999999999999999975 789999999999999999999999999996 4799999
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC----CCCCHHHHHHHHHHHH
Q 046312 335 LGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP----FQPNPIVLRALLSASS 410 (514)
Q Consensus 335 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~p~~~~~~~l~~~~~ 410 (514)
+.+|.+|++.|+.++|.++|++|.+. |+.||..||+.++.+|++.|+.++|.++|+.|. +.|+..+|++++.++.
T Consensus 395 n~lI~~y~~~G~~~~A~~lf~~M~~~-g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~ 473 (697)
T PLN03081 395 NALIAGYGNHGRGTKAVEMFERMIAE-GVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLG 473 (697)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHH
Confidence 99999999999999999999999986 999999999999999999999999999999994 7899999999999999
Q ss_pred hcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCceeEEEECCeEEEEEeccc
Q 046312 411 IHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNVGLKKMKGMSWVELGGSIHRFYSGYD 490 (514)
Q Consensus 411 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (514)
+.|+ +++|.++++.+ ...|+ ..+|..|+.+|...|+++.|..+++++.+.+ |....++ ..++..|.
T Consensus 474 r~G~---~~eA~~~~~~~-~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~--p~~~~~y-------~~L~~~y~ 539 (697)
T PLN03081 474 REGL---LDEAYAMIRRA-PFKPT-VNMWAALLTACRIHKNLELGRLAAEKLYGMG--PEKLNNY-------VVLLNLYN 539 (697)
T ss_pred hcCC---HHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCCcHHHHHHHHHHhCCC--CCCCcch-------HHHHHHHH
Confidence 9999 88888877653 23344 5679999999999999999999999997543 4433344 46788899
Q ss_pred CCcChHHHHHHHHHHHHHh
Q 046312 491 SQVELAGIYQILETLNLHM 509 (514)
Q Consensus 491 ~~~~~~~a~~~~~~m~~~~ 509 (514)
+.|++++|.+++++|++.-
T Consensus 540 ~~G~~~~A~~v~~~m~~~g 558 (697)
T PLN03081 540 SSGRQAEAAKVVETLKRKG 558 (697)
T ss_pred hCCCHHHHHHHHHHHHHcC
Confidence 9999999999999999763
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-27 Score=258.61 Aligned_cols=445 Identities=12% Similarity=0.051 Sum_probs=343.7
Q ss_pred hcChhHHHHHHHHHHHhCCCCChHHHHHHHHhcccCCCCChHHHHHHHcccCC--CCCcccHHHHHHHHHhCCCchHHHH
Q 046312 38 CCSKKHLYQIHAQIQVSGLQNDAQILKELVRFCTLSSSKNLTYARSILCNYVN--DSVPIPWNNLIRGYAWSDRPREAVW 115 (514)
Q Consensus 38 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~ 115 (514)
.++...+..++..+... .+.++.++..+...|. ..|++++|...|+++.. +.+...+..+...+...|++++|.+
T Consensus 444 ~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~--~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 520 (899)
T TIGR02917 444 SGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYL--GKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQ 520 (899)
T ss_pred cCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHH--hCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 34555555555555443 2445667777777777 77888888888776542 2334556667777777888888888
Q ss_pred HHHHHHHcCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCHHHHHHHhhccC---C
Q 046312 116 VFIDMKRRGIKPTEFTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKRDACKVFDDMC---E 192 (514)
Q Consensus 116 ~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~---~ 192 (514)
.|+++.+.+ +.+..++..+...+...|+.++|...++++.+.+ +.+...+..++..|.+.|++++|..+++.+. +
T Consensus 521 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 598 (899)
T TIGR02917 521 RFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAP 598 (899)
T ss_pred HHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 888877653 3455677777777778888888888888877664 4456667778888888888888888888773 3
Q ss_pred CChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHH
Q 046312 193 RSVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALI 272 (514)
Q Consensus 193 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 272 (514)
.+...|..+..++.+.|++++|...|+++.+.. +.+...+..+..++...|++++|..+++.+.+.. +.+...+..+.
T Consensus 599 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 676 (899)
T TIGR02917 599 DSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLA 676 (899)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 456778888888888888888888888887753 3456677778888888888888888888887764 33567778888
Q ss_pred HHHHhcCCHHHHHHHHHhcCc---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHH
Q 046312 273 DMYAKCGAVGCARLLFSRMEE---INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVED 349 (514)
Q Consensus 273 ~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 349 (514)
..+...|++++|.++++.+.+ .+...+..+...+...|++++|...|+++...+ |+..++..+..++...|++++
T Consensus 677 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~ 754 (899)
T TIGR02917 677 QLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAE 754 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHH
Confidence 888888888888888888765 356677778888889999999999999988753 555677778888899999999
Q ss_pred HHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 046312 350 GYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP--FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRR 427 (514)
Q Consensus 350 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~ 427 (514)
|...++.+.+. .+.+...+..+...|.+.|++++|.+.|+++. .+++...+..+...+...|+ .+|...+++
T Consensus 755 A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~----~~A~~~~~~ 828 (899)
T TIGR02917 755 AVKTLEAWLKT--HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD----PRALEYAEK 828 (899)
T ss_pred HHHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc----HHHHHHHHH
Confidence 99999998874 34567788888899999999999999999885 44567888888888888776 348999999
Q ss_pred HHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCceeEEEECCeEEEEEecccCCcChHHHHHHHHHHH
Q 046312 428 LLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNVGLKKMKGMSWVELGGSIHRFYSGYDSQVELAGIYQILETLN 506 (514)
Q Consensus 428 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~ 506 (514)
+.+..|+++..+..++.+|...|++++|.++++++.+.+.. .+ ..+ ..+...+...|++++|.+++++|.
T Consensus 829 ~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~-~~~-------~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 829 ALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AA-AIR-------YHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-Ch-HHH-------HHHHHHHHHcCCHHHHHHHHHHHh
Confidence 99999999988889999999999999999999999987653 22 222 356778999999999999999885
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.1e-27 Score=253.10 Aligned_cols=416 Identities=11% Similarity=-0.026 Sum_probs=268.5
Q ss_pred CCCChHHHHHHHcccCC--CCCcccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCCchHHHHH
Q 046312 74 SSKNLTYARSILCNYVN--DSVPIPWNNLIRGYAWSDRPREAVWVFIDMKRRGIKPTEFTYPFVLKACAEISGLNEGMQV 151 (514)
Q Consensus 74 ~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 151 (514)
+.|++++|..+++.+.. ..++.+|+.+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.
T Consensus 443 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~ 521 (899)
T TIGR02917 443 RSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQR 521 (899)
T ss_pred hcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 45555555555544431 2233455555666666666666666666655431 22333455555556666666666666
Q ss_pred HHHHHHhCCCCCcchHHHHHHHHHcCCCHHHHHHHhhccC---CCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC
Q 046312 152 QANVTKSGLDSDVYTNNNLVRFYGSCRRKRDACKVFDDMC---ERSVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEP 228 (514)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 228 (514)
++++.+.+ +.+..++..+...+.+.|+.++|..+++++. +.+...+..++..+.+.|++++|..+++++.+.. +.
T Consensus 522 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~ 599 (899)
T TIGR02917 522 FEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PD 599 (899)
T ss_pred HHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CC
Confidence 66665543 3345556666666666666666666666652 2234455566666666777777777777666542 44
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCc---CCHHHHHHHHHH
Q 046312 229 DETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEE---INVWTWSAMILG 305 (514)
Q Consensus 229 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 305 (514)
+..++..+..++...|++++|...++.+.+.. +.+...+..+..+|.+.|++++|..+|+++.+ .+..++..++..
T Consensus 600 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 678 (899)
T TIGR02917 600 SPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQL 678 (899)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 55666667777777777777777777766654 23455666677777777777777777776654 345666777777
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHH
Q 046312 306 LAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKE 385 (514)
Q Consensus 306 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 385 (514)
+...|++++|..+++.+.+.+ +.+...+..+...+...|++++|...++.+... .|+..++..++.++.+.|++++
T Consensus 679 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~ 754 (899)
T TIGR02917 679 LLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKR---APSSQNAIKLHRALLASGNTAE 754 (899)
T ss_pred HHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh---CCCchHHHHHHHHHHHCCCHHH
Confidence 777777777777777776653 344556666667777777777777777777653 4555666667777777777777
Q ss_pred HHHHHHhCC--CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 046312 386 AYTFIMNMP--FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMK 463 (514)
Q Consensus 386 A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 463 (514)
|.+.++++. .+.+...+..+...|...|+ .++|.+.++.+.+..|+++.++..++.++.+.|+ .+|..+++++.
T Consensus 755 A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~ 830 (899)
T TIGR02917 755 AVKTLEAWLKTHPNDAVLRTALAELYLAQKD---YDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKAL 830 (899)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCcC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHH
Confidence 777777764 33456677777777777777 7778888877777777777777777888877777 77777777776
Q ss_pred hCCCCCCCceeEEEECCeEEEEEecccCCcChHHHHHHHHHHHHHhh
Q 046312 464 NVGLKKMKGMSWVELGGSIHRFYSGYDSQVELAGIYQILETLNLHMK 510 (514)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~ 510 (514)
... |.....| ..+...+...|++++|...++++.+.-+
T Consensus 831 ~~~--~~~~~~~-------~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 831 KLA--PNIPAIL-------DTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred hhC--CCCcHHH-------HHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 543 2233333 3455567888899999999998887544
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1e-19 Score=198.18 Aligned_cols=451 Identities=12% Similarity=0.045 Sum_probs=278.8
Q ss_pred HHHHhhcChhHHHHHHHHHHHhCCCCChHHHHHHHH-hcccCCCCChHHHHHHHcccCC--CCCcccHHHHHHHHHhCCC
Q 046312 33 SFLKLCCSKKHLYQIHAQIQVSGLQNDAQILKELVR-FCTLSSSKNLTYARSILCNYVN--DSVPIPWNNLIRGYAWSDR 109 (514)
Q Consensus 33 ~ll~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~-~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~ 109 (514)
.++...++...+.+.++...+.. +|+......... ... ..|+.++|+..++++.. +.++..+..+...+...|+
T Consensus 120 ~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~--~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~ 196 (1157)
T PRK11447 120 RLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAK--LPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGR 196 (1157)
T ss_pred HHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhh--CCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCC
Confidence 35566678888888888776543 333322112222 223 46889999999988763 2234567778888888899
Q ss_pred chHHHHHHHHHHHcCC------------------C--------------CCcchH---------------------HHHH
Q 046312 110 PREAVWVFIDMKRRGI------------------K--------------PTEFTY---------------------PFVL 136 (514)
Q Consensus 110 ~~~a~~~~~~m~~~~~------------------~--------------p~~~~~---------------------~~ll 136 (514)
+++|++.++++.+... . |+.... ....
T Consensus 197 ~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G 276 (1157)
T PRK11447 197 RDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQG 276 (1157)
T ss_pred HHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHH
Confidence 9999998888754310 0 111000 0112
Q ss_pred HHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCHHHHHHHhhccCC--CCh---hhHH------------
Q 046312 137 KACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKRDACKVFDDMCE--RSV---VSWN------------ 199 (514)
Q Consensus 137 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~~~---~~~~------------ 199 (514)
..+...|++++|+..|++..+.. +.+..++..+..+|.+.|++++|...|++..+ |+. ..|.
T Consensus 277 ~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~ 355 (1157)
T PRK11447 277 LAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLI 355 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHH
Confidence 34556788888888888888764 34677788888888888888888888887732 221 1121
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 046312 200 VIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCG 279 (514)
Q Consensus 200 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 279 (514)
.....+.+.|++++|...|+++.+.. +.+...+..+...+...|++++|.+.|+++.+.... +...+..+...|. .+
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~-~~ 432 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYR-QQ 432 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH-hc
Confidence 12345677888888888888888763 335566677778888888888888888888876532 3344444444442 23
Q ss_pred CHHHHHHHHHhcCcCC------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCc
Q 046312 280 AVGCARLLFSRMEEIN------------VWTWSAMILGLAQHGYAEEALELFSNMKNSSISPN-YVTFLGVLCACNHAGM 346 (514)
Q Consensus 280 ~~~~A~~~~~~~~~~~------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~ 346 (514)
+.++|..+++.+.... ...+..+...+...|++++|...|++.++. .|+ ...+..+...|.+.|+
T Consensus 433 ~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~ 510 (1157)
T PRK11447 433 SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQ 510 (1157)
T ss_pred CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCC
Confidence 4444444444433210 112223334444555555555555555543 222 2334444445555555
Q ss_pred HHHHHHHHHHHHHhhCCCCc-hHHH--------------------------------------------HHHHHHHHhcC
Q 046312 347 VEDGYRYFHEMEHVHGIKPM-RIHY--------------------------------------------HTMADILARAG 381 (514)
Q Consensus 347 ~~~a~~~~~~~~~~~~~~p~-~~~~--------------------------------------------~~li~~~~~~g 381 (514)
+++|...++++.+. .|+ ...+ ..+...+...|
T Consensus 511 ~~~A~~~l~~al~~---~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G 587 (1157)
T PRK11447 511 RSQADALMRRLAQQ---KPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSG 587 (1157)
T ss_pred HHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCC
Confidence 55555555555432 111 1111 12334455666
Q ss_pred CHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHH
Q 046312 382 HLKEAYTFIMNMPFQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRF 461 (514)
Q Consensus 382 ~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 461 (514)
+.++|.++++.-+ ++...+..+...+...|+ .++|.+.++.+.+..|+++.++..++.+|...|++++|.+.++.
T Consensus 588 ~~~eA~~~l~~~p--~~~~~~~~La~~~~~~g~---~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ 662 (1157)
T PRK11447 588 KEAEAEALLRQQP--PSTRIDLTLADWAQQRGD---YAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAK 662 (1157)
T ss_pred CHHHHHHHHHhCC--CCchHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 6666666666433 344556667778888888 88899999998888888888888889999889999999998887
Q ss_pred HHhCCCCCCCceeEEEECCeEEEEEecccCCcChHHHHHHHHHHHHHh
Q 046312 462 MKNVGLKKMKGMSWVELGGSIHRFYSGYDSQVELAGIYQILETLNLHM 509 (514)
Q Consensus 462 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~ 509 (514)
..+... .....+ ..+...+...|++++|.+.++++....
T Consensus 663 ll~~~p--~~~~~~-------~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 663 LPATAN--DSLNTQ-------RRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred HhccCC--CChHHH-------HHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 765432 222222 234455677888888888888887643
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.6e-20 Score=174.95 Aligned_cols=377 Identities=14% Similarity=0.086 Sum_probs=313.6
Q ss_pred ChHHHHHHHHhcccCCCCChHHHHHHHcccCC--CCCcccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHH-HH
Q 046312 59 DAQILKELVRFCTLSSSKNLTYARSILCNYVN--DSVPIPWNNLIRGYAWSDRPREAVWVFIDMKRRGIKPTEFTYP-FV 135 (514)
Q Consensus 59 ~~~~~~~ll~~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~-~l 135 (514)
-..+|..+.+.+. ..|++++|..+++.+.+ ...+..|..+..++...|+.+.|.+.|.+..+ +.|+..... .+
T Consensus 115 ~ae~ysn~aN~~k--erg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~l 190 (966)
T KOG4626|consen 115 GAEAYSNLANILK--ERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDL 190 (966)
T ss_pred HHHHHHHHHHHHH--HhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcch
Confidence 3578888999999 99999999999998763 33457899999999999999999999999887 456655333 33
Q ss_pred HHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCHHHHHHHhhccCCCC---hhhHHHHHHHHHhCCChh
Q 046312 136 LKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKRDACKVFDDMCERS---VVSWNVIITVCVENLWLG 212 (514)
Q Consensus 136 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~ 212 (514)
-..+-..|++.+|...+.+.++.. +-=...|+.|...+-..|++..|...|++.+.-| ...|-.|...|...+.++
T Consensus 191 gnLlka~Grl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d 269 (966)
T KOG4626|consen 191 GNLLKAEGRLEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFD 269 (966)
T ss_pred hHHHHhhcccchhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcch
Confidence 344455799999999998888763 2235678899999999999999999999986544 457888889999999999
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 046312 213 EAVGYFVKMKDLGFEPD-ETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRM 291 (514)
Q Consensus 213 ~a~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 291 (514)
+|+..|.+.... .|+ ...+..+...|...|.+|.|...+++.++.... -+..|+.|..++-..|++.+|.+.|.+.
T Consensus 270 ~Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnka 346 (966)
T KOG4626|consen 270 RAVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKA 346 (966)
T ss_pred HHHHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHH
Confidence 999999888765 454 567888888889999999999999999886522 3678999999999999999999999988
Q ss_pred Cc---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCc-
Q 046312 292 EE---INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPN-YVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPM- 366 (514)
Q Consensus 292 ~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~- 366 (514)
.. ....+.+.|...|...|.+++|..+|....+ +.|. ...++.|...|-++|++++|...|++.. .++|+
T Consensus 347 L~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~f 421 (966)
T KOG4626|consen 347 LRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTF 421 (966)
T ss_pred HHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchH
Confidence 75 3467888899999999999999999999887 5566 4568889999999999999999999988 56888
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHH
Q 046312 367 RIHYHTMADILARAGHLKEAYTFIMNMP-FQPN-PIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVAN 444 (514)
Q Consensus 367 ~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 444 (514)
...|+.+...|-..|+.+.|.+.+.+.. +.|. ....+.|...|...|+ +.+|...++.+.+++|+.+++|-.++.
T Consensus 422 Ada~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGn---i~~AI~sY~~aLklkPDfpdA~cNllh 498 (966)
T KOG4626|consen 422 ADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGN---IPEAIQSYRTALKLKPDFPDAYCNLLH 498 (966)
T ss_pred HHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCC---cHHHHHHHHHHHccCCCCchhhhHHHH
Confidence 6789999999999999999999998876 6665 5778889999999999 999999999999999999999887776
Q ss_pred HHHhcCC
Q 046312 445 KYAEVGM 451 (514)
Q Consensus 445 ~~~~~g~ 451 (514)
++--..+
T Consensus 499 ~lq~vcd 505 (966)
T KOG4626|consen 499 CLQIVCD 505 (966)
T ss_pred HHHHHhc
Confidence 6644333
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.9e-19 Score=190.91 Aligned_cols=413 Identities=10% Similarity=0.001 Sum_probs=298.1
Q ss_pred hcChhHHHHHHHHHHHhCCCCChHHHHHHHHhcccCCCCChHHHHHHHcccCC-CCCc---ccHHHH------------H
Q 046312 38 CCSKKHLYQIHAQIQVSGLQNDAQILKELVRFCTLSSSKNLTYARSILCNYVN-DSVP---IPWNNL------------I 101 (514)
Q Consensus 38 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~g~~~~A~~~~~~~~~-~~~~---~~~~~l------------i 101 (514)
.++...+...++..++.. +-+...+..+...|. +.|++++|+..|++... .|+. ..|..+ .
T Consensus 282 ~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~--~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g 358 (1157)
T PRK11447 282 SGQGGKAIPELQQAVRAN-PKDSEALGALGQAYS--QQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQG 358 (1157)
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHH
Confidence 355666666666665543 235667777777777 77888888887776642 1221 112211 2
Q ss_pred HHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCHH
Q 046312 102 RGYAWSDRPREAVWVFIDMKRRGIKPTEFTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKR 181 (514)
Q Consensus 102 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 181 (514)
..+.+.|++++|++.|++..+.. +.+...+..+...+...|++++|++.|+++.+.. +.+...+..+...|. .++.+
T Consensus 359 ~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~~ 435 (1157)
T PRK11447 359 DAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQSPE 435 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcCHH
Confidence 34567778888888888777652 2344456667777777888888888888777663 334455556666654 45677
Q ss_pred HHHHHhhccCCCC------------hhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHH
Q 046312 182 DACKVFDDMCERS------------VVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLG 249 (514)
Q Consensus 182 ~A~~~~~~~~~~~------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a 249 (514)
+|..+++.+.... ...+..+...+...|++++|++.|++..+.. +-+...+..+...+.+.|++++|
T Consensus 436 ~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A 514 (1157)
T PRK11447 436 KALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQA 514 (1157)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 7777777663321 1234455667788999999999999998863 23456777888889999999999
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCcC----CH---------HHHHHHHHHHHHcCChHHHH
Q 046312 250 KWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEEI----NV---------WTWSAMILGLAQHGYAEEAL 316 (514)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~---------~~~~~li~~~~~~~~~~~a~ 316 (514)
...++.+.+.... +...+..+...+...|+.++|...++.+... +. ..+..+...+...|+.++|.
T Consensus 515 ~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~ 593 (1157)
T PRK11447 515 DALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAE 593 (1157)
T ss_pred HHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHH
Confidence 9999998876532 4455555666678889999999999987641 11 12234566788999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC-C
Q 046312 317 ELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP-F 395 (514)
Q Consensus 317 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~ 395 (514)
.+++. .+.+...+..+...+.+.|++++|...|+++.+. -+.+...+..++..|...|++++|.+.++.+. .
T Consensus 594 ~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~ 666 (1157)
T PRK11447 594 ALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAKLPAT 666 (1157)
T ss_pred HHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 99872 2445566777888999999999999999999974 23347788899999999999999999999886 4
Q ss_pred CC-CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCc------hHHHHHHHHHhcCCHHHHHHHHHHHH-hCCC
Q 046312 396 QP-NPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQ------NLVIVANKYAEVGMWEKVSNVRRFMK-NVGL 467 (514)
Q Consensus 396 ~p-~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~~A~~~~~~m~-~~~~ 467 (514)
.| +...+..+..++...|+ .++|.+.++.+.+..|+++. .+..++..+...|++++|...|++.. ..++
T Consensus 667 ~p~~~~~~~~la~~~~~~g~---~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~ 743 (1157)
T PRK11447 667 ANDSLNTQRRVALAWAALGD---TAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGI 743 (1157)
T ss_pred CCCChHHHHHHHHHHHhCCC---HHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Confidence 44 45667778888899999 99999999999988766543 45567999999999999999999986 3444
Q ss_pred C
Q 046312 468 K 468 (514)
Q Consensus 468 ~ 468 (514)
.
T Consensus 744 ~ 744 (1157)
T PRK11447 744 T 744 (1157)
T ss_pred C
Confidence 3
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.3e-19 Score=180.98 Aligned_cols=250 Identities=11% Similarity=0.009 Sum_probs=205.2
Q ss_pred CChhHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 046312 209 LWLGEAVGYFVKMKDLG-FEP-DETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARL 286 (514)
Q Consensus 209 ~~~~~a~~~~~~m~~~~-~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 286 (514)
+++++|.+.|++..+.+ ..| ....+..+...+...|++++|...++..++... .+...|..+...+...|++++|..
T Consensus 308 ~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P-~~~~~~~~la~~~~~~g~~~eA~~ 386 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDP-RVTQSYIKRASMNLELGDPDKAEE 386 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHCCCHHHHHH
Confidence 67899999999998864 234 345677778888899999999999999988753 246678888999999999999999
Q ss_pred HHHhcCc---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCC
Q 046312 287 LFSRMEE---INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGI 363 (514)
Q Consensus 287 ~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 363 (514)
.|+++.+ .+...|..+...+...|++++|...|++.++.. +.+...+..+..++.+.|++++|...+++..+. .
T Consensus 387 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~ 463 (615)
T TIGR00990 387 DFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN--F 463 (615)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--C
Confidence 9998865 357889999999999999999999999999853 234666777888899999999999999999864 2
Q ss_pred CCchHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCH-H-------HHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCC
Q 046312 364 KPMRIHYHTMADILARAGHLKEAYTFIMNMP-FQPNP-I-------VLRALLSASSIHDAKYQDGVGNEVRRRLLELEPR 434 (514)
Q Consensus 364 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~~-~-------~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~ 434 (514)
+.+...+..+...+...|++++|.+.|++.. ..|+. . .++.....+...|+ +++|.+.++++.+++|+
T Consensus 464 P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~---~~eA~~~~~kAl~l~p~ 540 (615)
T TIGR00990 464 PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQD---FIEAENLCEKALIIDPE 540 (615)
T ss_pred CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhh---HHHHHHHHHHHHhcCCC
Confidence 3347788889999999999999999999875 43421 1 12222223344688 99999999999999999
Q ss_pred CCchHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 046312 435 GSQNLVIVANKYAEVGMWEKVSNVRRFMKNV 465 (514)
Q Consensus 435 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 465 (514)
+..++..++.++.+.|++++|.+.|++..+.
T Consensus 541 ~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 541 CDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 8888999999999999999999999998764
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=3e-19 Score=173.61 Aligned_cols=295 Identities=12% Similarity=0.051 Sum_probs=137.2
Q ss_pred HhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCHHHHHHHhhccCCC-C------hhhHHHHHHHHHhCCCh
Q 046312 139 CAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKRDACKVFDDMCER-S------VVSWNVIITVCVENLWL 211 (514)
Q Consensus 139 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-~------~~~~~~li~~~~~~~~~ 211 (514)
+...|++++|...|+++.+.+ +.+..++..+...+...|++++|..+++.+... + ...+..+...|.+.|++
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 344455555555555555442 223344555555555555555555555554221 0 13455556666666666
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCch----hHHHHHHHHHHhcCCHHHHHHH
Q 046312 212 GEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNC----QLGTALIDMYAKCGAVGCARLL 287 (514)
Q Consensus 212 ~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~ 287 (514)
++|..+|+++.+.. +++..++..++..+.+.|++++|...++.+.+.+..+.. ..+..+...+.+
T Consensus 124 ~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~---------- 192 (389)
T PRK11788 124 DRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALA---------- 192 (389)
T ss_pred HHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHh----------
Confidence 66666666665542 334555666666666666666666666666554422211 112233333444
Q ss_pred HHhcCcCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCch
Q 046312 288 FSRMEEINVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMR 367 (514)
Q Consensus 288 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~ 367 (514)
.|++++|..+|+++.+.. +.+...+..+...+...|++++|.++++++.+. +.....
T Consensus 193 ---------------------~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~~~ 249 (389)
T PRK11788 193 ---------------------RGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQ-DPEYLS 249 (389)
T ss_pred ---------------------CCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-ChhhHH
Confidence 444444444444444321 111223333444444444444444444444432 111112
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 046312 368 IHYHTMADILARAGHLKEAYTFIMNMP-FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKY 446 (514)
Q Consensus 368 ~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 446 (514)
.++..++.+|.+.|++++|...++++. ..|+...+..+...+...|+ ++.|...++.+.+..|++. .+..++..+
T Consensus 250 ~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~---~~~A~~~l~~~l~~~P~~~-~~~~l~~~~ 325 (389)
T PRK11788 250 EVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEG---PEAAQALLREQLRRHPSLR-GFHRLLDYH 325 (389)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCC---HHHHHHHHHHHHHhCcCHH-HHHHHHHHh
Confidence 233444444444455555544444443 33443334444444444454 5555555554444444433 233333332
Q ss_pred Hh---cCCHHHHHHHHHHHHhCCCCCCCc
Q 046312 447 AE---VGMWEKVSNVRRFMKNVGLKKMKG 472 (514)
Q Consensus 447 ~~---~g~~~~A~~~~~~m~~~~~~~~~~ 472 (514)
.. .|+.+++..++++|.+.++.+.|.
T Consensus 326 ~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 326 LAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred hhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 22 235555555555555555444443
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2e-19 Score=174.88 Aligned_cols=255 Identities=15% Similarity=0.115 Sum_probs=202.5
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCc---hhHHHHHHHHHHhcCC
Q 046312 204 VCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLN---CQLGTALIDMYAKCGA 280 (514)
Q Consensus 204 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~ 280 (514)
.+...|++++|...|+++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ...+..+...|.+.|+
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 3456677777777777777653 23445667777777777777777777777766532221 2456778888888999
Q ss_pred HHHHHHHHHhcCc---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCcHHHHHHH
Q 046312 281 VGCARLLFSRMEE---INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNY----VTFLGVLCACNHAGMVEDGYRY 353 (514)
Q Consensus 281 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~~~~~~a~~~ 353 (514)
+++|..+|+++.+ .+..++..++..+.+.|++++|.+.++.+.+.+..+.. ..+..+...+.+.|++++|..+
T Consensus 123 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 202 (389)
T PRK11788 123 LDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL 202 (389)
T ss_pred HHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 9999999988875 45678889999999999999999999999886533322 2355677788899999999999
Q ss_pred HHHHHHhhCCCCc-hHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC--HHHHHHHHHHHHhcCCCCcchHHHHHHHHHH
Q 046312 354 FHEMEHVHGIKPM-RIHYHTMADILARAGHLKEAYTFIMNMP-FQPN--PIVLRALLSASSIHDAKYQDGVGNEVRRRLL 429 (514)
Q Consensus 354 ~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~--~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~ 429 (514)
++++.+. .|+ ...+..+...+.+.|++++|.++++++. ..|+ ..++..++.+|...|+ .++|...++.+.
T Consensus 203 ~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~---~~~A~~~l~~~~ 276 (389)
T PRK11788 203 LKKALAA---DPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGD---EAEGLEFLRRAL 276 (389)
T ss_pred HHHHHhH---CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCC---HHHHHHHHHHHH
Confidence 9999864 344 6678888999999999999999999986 4454 3567889999999999 999999999999
Q ss_pred hcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 046312 430 ELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNVG 466 (514)
Q Consensus 430 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 466 (514)
+..|+. ..+..++..+.+.|++++|..+++++.+..
T Consensus 277 ~~~p~~-~~~~~la~~~~~~g~~~~A~~~l~~~l~~~ 312 (389)
T PRK11788 277 EEYPGA-DLLLALAQLLEEQEGPEAAQALLREQLRRH 312 (389)
T ss_pred HhCCCc-hHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 999975 456899999999999999999999987764
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2e-19 Score=167.68 Aligned_cols=361 Identities=14% Similarity=0.136 Sum_probs=310.1
Q ss_pred ccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCC-CcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcc-hHHHHHH
Q 046312 95 IPWNNLIRGYAWSDRPREAVWVFIDMKRRGIKP-TEFTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVY-TNNNLVR 172 (514)
Q Consensus 95 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~li~ 172 (514)
.+|..+...+-..|++++|+.+|+.+.+. +| ....|..+..++...|+.+.|.+.|.+..+. .|+.. ..+.+..
T Consensus 117 e~ysn~aN~~kerg~~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgn 192 (966)
T KOG4626|consen 117 EAYSNLANILKERGQLQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGN 192 (966)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhH
Confidence 56888888999999999999999999885 44 4568999999999999999999999998876 45443 3345566
Q ss_pred HHHcCCCHHHHHHHhhccCC--CC-hhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCChHH
Q 046312 173 FYGSCRRKRDACKVFDDMCE--RS-VVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPD-ETTMLVVLSACTELGNLSL 248 (514)
Q Consensus 173 ~~~~~~~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~g~~~~ 248 (514)
.+...|++.+|...+.+..+ |. .+.|+.|...+..+|+...|++.|++..+. .|+ ...|..|-..|...+.++.
T Consensus 193 Llka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~ 270 (966)
T KOG4626|consen 193 LLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDR 270 (966)
T ss_pred HHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchH
Confidence 66778999999998887743 32 468999999999999999999999999875 555 4688899999999999999
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCc--CC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 046312 249 GKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEE--IN-VWTWSAMILGLAQHGYAEEALELFSNMKNS 325 (514)
Q Consensus 249 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 325 (514)
|...+........ ....++..+...|...|.++-|+..|++..+ |+ ...|+.|..++-..|++.+|...|.+.+..
T Consensus 271 Avs~Y~rAl~lrp-n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l 349 (966)
T KOG4626|consen 271 AVSCYLRALNLRP-NHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL 349 (966)
T ss_pred HHHHHHHHHhcCC-cchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh
Confidence 9999988877642 2567778888899999999999999999876 44 679999999999999999999999999874
Q ss_pred CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCc-hHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC-HHH
Q 046312 326 SISPN-YVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPM-RIHYHTMADILARAGHLKEAYTFIMNMP-FQPN-PIV 401 (514)
Q Consensus 326 g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~-~~~ 401 (514)
.|+ ....+.|...+.+.|.++.|..+|....+ +.|. ....+.|...|-++|++++|+.-+++.. ++|+ ...
T Consensus 350 --~p~hadam~NLgni~~E~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda 424 (966)
T KOG4626|consen 350 --CPNHADAMNNLGNIYREQGKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADA 424 (966)
T ss_pred --CCccHHHHHHHHHHHHHhccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHH
Confidence 455 56788899999999999999999999875 4666 5678899999999999999999999886 7886 578
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 046312 402 LRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNVGLKKM 470 (514)
Q Consensus 402 ~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 470 (514)
|+.+...|...|+ ++.|.+.+.+++..+|.-.+++..|+.+|...|+..+|+.-++.........+
T Consensus 425 ~~NmGnt~ke~g~---v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfp 490 (966)
T KOG4626|consen 425 LSNMGNTYKEMGD---VSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFP 490 (966)
T ss_pred HHhcchHHHHhhh---HHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCc
Confidence 9999999999999 99999999999999999899999999999999999999999999987655433
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.6e-18 Score=173.60 Aligned_cols=352 Identities=9% Similarity=-0.080 Sum_probs=264.7
Q ss_pred CCCChHHHHHHHcccCC-----CCCcccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCCchHH
Q 046312 74 SSKNLTYARSILCNYVN-----DSVPIPWNNLIRGYAWSDRPREAVWVFIDMKRRGIKPTEFTYPFVLKACAEISGLNEG 148 (514)
Q Consensus 74 ~~g~~~~A~~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a 148 (514)
+..+++...-.|+..++ ..+..-...++..+.+.|++++|+.+++...... +-+...+..++.++...|+++.|
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A 95 (656)
T PRK15174 17 KQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAV 95 (656)
T ss_pred hhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHH
Confidence 45556555555555442 1122334556777888999999999998887763 33344556666777789999999
Q ss_pred HHHHHHHHHhCCCCCcchHHHHHHHHHcCCCHHHHHHHhhccCC---CChhhHHHHHHHHHhCCChhHHHHHHHHHHHCC
Q 046312 149 MQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKRDACKVFDDMCE---RSVVSWNVIITVCVENLWLGEAVGYFVKMKDLG 225 (514)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 225 (514)
...++++.+.. +.+...+..+...+...|++++|...+++... .+...+..+...+...|++++|...++.+....
T Consensus 96 ~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~ 174 (656)
T PRK15174 96 LQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV 174 (656)
T ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC
Confidence 99999998774 44567788888889999999999999988833 356678888888999999999999998887653
Q ss_pred CCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCc---CCHHHHHHH
Q 046312 226 FEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEE---INVWTWSAM 302 (514)
Q Consensus 226 ~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l 302 (514)
.. +...+..+ ..+...|++++|...++.+.+....++......+...+.+.|++++|+..|++..+ .+...+..+
T Consensus 175 P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~L 252 (656)
T PRK15174 175 PP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSL 252 (656)
T ss_pred CC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 22 22333333 34678899999999999887775444555556667788899999999999988775 356778888
Q ss_pred HHHHHHcCChHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCc-hHHHHHHHHHH
Q 046312 303 ILGLAQHGYAEE----ALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPM-RIHYHTMADIL 377 (514)
Q Consensus 303 i~~~~~~~~~~~----a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~ 377 (514)
...+...|++++ |...|++..+.. +.+...+..+...+...|++++|...+++..+. .|+ ...+..+..++
T Consensus 253 g~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l---~P~~~~a~~~La~~l 328 (656)
T PRK15174 253 GLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT---HPDLPYVRAMYARAL 328 (656)
T ss_pred HHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHH
Confidence 888999999885 788999888742 234567888888899999999999999998864 444 55667788889
Q ss_pred HhcCCHHHHHHHHHhCC-CCCCHHH-HHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCC
Q 046312 378 ARAGHLKEAYTFIMNMP-FQPNPIV-LRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGS 436 (514)
Q Consensus 378 ~~~g~~~~A~~~~~~~~-~~p~~~~-~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 436 (514)
.+.|++++|...++++. ..|+... +..+..++...|+ .++|...++.+.+..|+..
T Consensus 329 ~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~---~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 329 RQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGK---TSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCC---HHHHHHHHHHHHHhChhhc
Confidence 99999999999998886 5666533 3345667888899 9999999999999988754
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.9e-17 Score=172.64 Aligned_cols=186 Identities=9% Similarity=-0.006 Sum_probs=97.2
Q ss_pred HhcCCHHHHHHHHHhcCcCC---H-HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHhccCcHH
Q 046312 276 AKCGAVGCARLLFSRMEEIN---V-WTWSAMILGLAQHGYAEEALELFSNMKNSSISP---NYVTFLGVLCACNHAGMVE 348 (514)
Q Consensus 276 ~~~g~~~~A~~~~~~~~~~~---~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p---~~~~~~~ll~~~~~~~~~~ 348 (514)
...|++++|+..|+.+.+.+ + ..-..+...|...|++++|+.+|+++.+..... .......+..++...|+++
T Consensus 248 l~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~ 327 (765)
T PRK10049 248 LARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYP 327 (765)
T ss_pred HHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHH
Confidence 34455555555555555321 1 111113445555666666666666554422110 0123334444555566666
Q ss_pred HHHHHHHHHHHhhC----------CCCc---hHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcC
Q 046312 349 DGYRYFHEMEHVHG----------IKPM---RIHYHTMADILARAGHLKEAYTFIMNMP--FQPNPIVLRALLSASSIHD 413 (514)
Q Consensus 349 ~a~~~~~~~~~~~~----------~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~ 413 (514)
+|..+++.+..... -.|+ ...+..+...+...|+.++|+++++++. .+.+...+..+...+...|
T Consensus 328 eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g 407 (765)
T PRK10049 328 GALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARG 407 (765)
T ss_pred HHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 66666665554210 0111 1223344555566666666666666654 2223455555666666666
Q ss_pred CCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 046312 414 AKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKN 464 (514)
Q Consensus 414 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 464 (514)
+ .+.|.+.++.+.++.|++...+..++..+.+.|++++|..+++++.+
T Consensus 408 ~---~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~ 455 (765)
T PRK10049 408 W---PRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVA 455 (765)
T ss_pred C---HHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 6 66666666666666666666666666666666666666666666654
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.1e-16 Score=166.91 Aligned_cols=401 Identities=10% Similarity=-0.027 Sum_probs=307.7
Q ss_pred cchhhhHHHHHHHhhcChhHHHHHHHHHHHhCCCCChHHHHHHHHhcccCCCCChHHHHHHHcccCC--CCCcccHHHHH
Q 046312 24 LLSKARQCLSFLKLCCSKKHLYQIHAQIQVSGLQNDAQILKELVRFCTLSSSKNLTYARSILCNYVN--DSVPIPWNNLI 101 (514)
Q Consensus 24 ~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li 101 (514)
....+.-++.|....++...+..++....... +.+...+..+...+. +.|++++|..+|++... +.++..+..+.
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~--~~g~~~~A~~~~~~al~~~P~~~~a~~~la 90 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYR--NLKQWQNSLTLWQKALSLEPQNDDYQRGLI 90 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 34566778899999999999999998887633 455667888999999 99999999999999532 44566778888
Q ss_pred HHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCHH
Q 046312 102 RGYAWSDRPREAVWVFIDMKRRGIKPTEFTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKR 181 (514)
Q Consensus 102 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 181 (514)
..+...|++++|+..+++..+. .+.+.. +..+..++...|+.++|...++++.+.. +.+...+..+..++...+..+
T Consensus 91 ~~l~~~g~~~eA~~~l~~~l~~-~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e 167 (765)
T PRK10049 91 LTLADAGQYDEALVKAKQLVSG-APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSA 167 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHh-CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChH
Confidence 8999999999999999999886 234455 8888889999999999999999999874 335666677888889999999
Q ss_pred HHHHHhhccCCCChh--------hHHHHHHHHHh-----CCCh---hHHHHHHHHHHHC-CCCCCHH-HHH----HHHHH
Q 046312 182 DACKVFDDMCERSVV--------SWNVIITVCVE-----NLWL---GEAVGYFVKMKDL-GFEPDET-TML----VVLSA 239 (514)
Q Consensus 182 ~A~~~~~~~~~~~~~--------~~~~li~~~~~-----~~~~---~~a~~~~~~m~~~-~~~p~~~-t~~----~ll~~ 239 (514)
+|.+.++.... ++. ....++..... .+++ ++|+..++.+.+. ...|+.. .+. ..+.+
T Consensus 168 ~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~ 246 (765)
T PRK10049 168 PALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGA 246 (765)
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHH
Confidence 99999988765 211 22223333222 2234 7788889988864 2233321 111 11344
Q ss_pred HhccCChHHHHHHHHHHHHhCCC-CchhHHHHHHHHHHhcCCHHHHHHHHHhcCcCC-------HHHHHHHHHHHHHcCC
Q 046312 240 CTELGNLSLGKWVHLQLIERGTV-LNCQLGTALIDMYAKCGAVGCARLLFSRMEEIN-------VWTWSAMILGLAQHGY 311 (514)
Q Consensus 240 ~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~~~ 311 (514)
+...|++++|...|+.+.+.+.. |+. ....+..+|...|++++|+..|+++.+.+ ......+..++...|+
T Consensus 247 Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~ 325 (765)
T PRK10049 247 LLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESEN 325 (765)
T ss_pred HHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhccc
Confidence 56779999999999999988642 332 22335779999999999999999986522 2456667778899999
Q ss_pred hHHHHHHHHHHHHCCC-----------CCCH---HHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHH
Q 046312 312 AEEALELFSNMKNSSI-----------SPNY---VTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADIL 377 (514)
Q Consensus 312 ~~~a~~~~~~m~~~g~-----------~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 377 (514)
+++|..+++.+..... .|+. ..+..+...+...|+.++|..+++++... .+-+...+..+...+
T Consensus 326 ~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~--~P~n~~l~~~lA~l~ 403 (765)
T PRK10049 326 YPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN--APGNQGLRIDYASVL 403 (765)
T ss_pred HHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 9999999999987521 1332 24456677888999999999999999874 344577888899999
Q ss_pred HhcCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCc
Q 046312 378 ARAGHLKEAYTFIMNMP-FQPN-PIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQ 437 (514)
Q Consensus 378 ~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 437 (514)
...|++++|++.++++. ..|+ ...+..+...+...++ ++.|+..++.+.+..|+++.
T Consensus 404 ~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~---~~~A~~~~~~ll~~~Pd~~~ 462 (765)
T PRK10049 404 QARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQE---WRQMDVLTDDVVAREPQDPG 462 (765)
T ss_pred HhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCC---HHHHHHHHHHHHHhCCCCHH
Confidence 99999999999999986 5665 5666677778899999 99999999999999999874
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=7e-17 Score=164.94 Aligned_cols=327 Identities=9% Similarity=-0.040 Sum_probs=268.1
Q ss_pred chHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCHHHHHHHhhccC---CCChhhHHHHHHHHH
Q 046312 130 FTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKRDACKVFDDMC---ERSVVSWNVIITVCV 206 (514)
Q Consensus 130 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~ 206 (514)
.....++..+.+.|+++.|..+++...... +-+...+..++.+....|++++|...++++. +.+...+..+...+.
T Consensus 43 ~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~ 121 (656)
T PRK15174 43 QNIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLL 121 (656)
T ss_pred cCHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 345667778889999999999999998875 3345566667777788999999999999993 345678888899999
Q ss_pred hCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 046312 207 ENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARL 286 (514)
Q Consensus 207 ~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 286 (514)
..|++++|...++++.+.. +.+...+..+...+...|++++|...++.+......+.. .+..+ ..+...|++++|..
T Consensus 122 ~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~-a~~~~-~~l~~~g~~~eA~~ 198 (656)
T PRK15174 122 KSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGD-MIATC-LSFLNKSRLPEDHD 198 (656)
T ss_pred HcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHH-HHHHH-HHHHHcCCHHHHHH
Confidence 9999999999999998863 345667888899999999999999999988877644333 33333 34788999999999
Q ss_pred HHHhcCcC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHH----HHHHHHHHH
Q 046312 287 LFSRMEEI----NVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVED----GYRYFHEME 358 (514)
Q Consensus 287 ~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~----a~~~~~~~~ 358 (514)
.++.+.+. +...+..+...+...|++++|+..++++.+.. +.+...+..+...+...|++++ |...++++.
T Consensus 199 ~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al 277 (656)
T PRK15174 199 LARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHAL 277 (656)
T ss_pred HHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHH
Confidence 99987652 23444556778899999999999999999854 3346677788899999999985 899999998
Q ss_pred HhhCCCCc-hHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCC
Q 046312 359 HVHGIKPM-RIHYHTMADILARAGHLKEAYTFIMNMP-FQPN-PIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRG 435 (514)
Q Consensus 359 ~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~ 435 (514)
+. .|+ ...+..+...+.+.|++++|...+++.. ..|+ ...+..+...+...|+ +++|...++.+.+.+|++
T Consensus 278 ~l---~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~---~~eA~~~l~~al~~~P~~ 351 (656)
T PRK15174 278 QF---NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQ---YTAASDEFVQLAREKGVT 351 (656)
T ss_pred hh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHhCccc
Confidence 64 454 6788899999999999999999999986 4454 5667778889999999 999999999999999988
Q ss_pred CchHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 046312 436 SQNLVIVANKYAEVGMWEKVSNVRRFMKNVGL 467 (514)
Q Consensus 436 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 467 (514)
...+..++.++...|+.++|...|++..+...
T Consensus 352 ~~~~~~~a~al~~~G~~deA~~~l~~al~~~P 383 (656)
T PRK15174 352 SKWNRYAAAALLQAGKTSEAESVFEHYIQARA 383 (656)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCh
Confidence 76666788999999999999999999887654
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.1e-17 Score=169.26 Aligned_cols=391 Identities=9% Similarity=-0.053 Sum_probs=289.1
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHc
Q 046312 97 WNNLIRGYAWSDRPREAVWVFIDMKRRGIKPTEFTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGS 176 (514)
Q Consensus 97 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 176 (514)
+......+.+.|++++|+..|++..+ +.|+...|..+..++...|++++|+..++..++.. +.+..++..+..+|..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 44566778889999999999999887 46788889999999999999999999999998874 3456788889999999
Q ss_pred CCCHHHHHHHhhccCC---CChhhHHHHHHHHHhCCChhHHHHHHHHHHHCC--CCCCHHHH------------------
Q 046312 177 CRRKRDACKVFDDMCE---RSVVSWNVIITVCVENLWLGEAVGYFVKMKDLG--FEPDETTM------------------ 233 (514)
Q Consensus 177 ~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~p~~~t~------------------ 233 (514)
.|++++|...|..... .+......++..+.. ..+........+.. ..|.....
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLED 282 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhc
Confidence 9999999987765522 111111222221111 11111111111111 00110000
Q ss_pred ------------HHHHH---HHhccCChHHHHHHHHHHHHhC-CCC-chhHHHHHHHHHHhcCCHHHHHHHHHhcCc--C
Q 046312 234 ------------LVVLS---ACTELGNLSLGKWVHLQLIERG-TVL-NCQLGTALIDMYAKCGAVGCARLLFSRMEE--I 294 (514)
Q Consensus 234 ------------~~ll~---~~~~~g~~~~a~~~~~~~~~~~-~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~ 294 (514)
..+.. -....+++++|...|+...+.+ ..| ....+..+...+...|++++|+..|++..+ |
T Consensus 283 ~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P 362 (615)
T TIGR00990 283 SNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDP 362 (615)
T ss_pred ccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 00000 0122367889999999998875 223 456788888999999999999999999875 4
Q ss_pred -CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCc-hHHHHH
Q 046312 295 -NVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPM-RIHYHT 372 (514)
Q Consensus 295 -~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 372 (514)
+...|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...|++..+. .|+ ...+..
T Consensus 363 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l---~P~~~~~~~~ 438 (615)
T TIGR00990 363 RVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL---DPDFIFSHIQ 438 (615)
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CccCHHHHHH
Confidence 35678888899999999999999999998753 334677888889999999999999999999863 454 667778
Q ss_pred HHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHH-------HHH
Q 046312 373 MADILARAGHLKEAYTFIMNMP-FQP-NPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLV-------IVA 443 (514)
Q Consensus 373 li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~-------~l~ 443 (514)
+...+.+.|++++|+..|++.. ..| +...+..+...+...|+ +++|.+.++.+.++.|.....+. ..+
T Consensus 439 la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~---~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~ 515 (615)
T TIGR00990 439 LGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNK---FDEAIEKFDTAIELEKETKPMYMNVLPLINKAL 515 (615)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccC---HHHHHHHHHHHHhcCCccccccccHHHHHHHHH
Confidence 8899999999999999999875 444 57888889999999999 99999999999999987543322 112
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCCceeEEEECCeEEEEEecccCCcChHHHHHHHHHHHHHhh
Q 046312 444 NKYAEVGMWEKVSNVRRFMKNVGLKKMKGMSWVELGGSIHRFYSGYDSQVELAGIYQILETLNLHMK 510 (514)
Q Consensus 444 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~ 510 (514)
..+...|++++|.+++++..... |.....+ ..+...+...|++++|...|++..+..+
T Consensus 516 ~~~~~~~~~~eA~~~~~kAl~l~--p~~~~a~-------~~la~~~~~~g~~~eAi~~~e~A~~l~~ 573 (615)
T TIGR00990 516 ALFQWKQDFIEAENLCEKALIID--PECDIAV-------ATMAQLLLQQGDVDEALKLFERAAELAR 573 (615)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcC--CCcHHHH-------HHHHHHHHHccCHHHHHHHHHHHHHHhc
Confidence 23344799999999999987654 3333344 4567778999999999999999876555
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.2e-16 Score=162.30 Aligned_cols=445 Identities=10% Similarity=-0.002 Sum_probs=266.4
Q ss_pred HHhhcChhHHHHHHHHHHHhCCCCChHHHHHHHHh--------cccCCCCChHHHHHHHcccCCCCC--cccHHH-HHHH
Q 046312 35 LKLCCSKKHLYQIHAQIQVSGLQNDAQILKELVRF--------CTLSSSKNLTYARSILCNYVNDSV--PIPWNN-LIRG 103 (514)
Q Consensus 35 l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~--------~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~-li~~ 103 (514)
+....+...+..+++.+.+.. +-+..++..+... |. +.+...+++. .+.. .++ +.+... +.+.
T Consensus 118 La~i~~~~kA~~~ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~--q~eqAl~AL~--lr~~-~~~~~~~vL~L~~~rl 191 (987)
T PRK09782 118 LAAIPVEVKSVTTVEELLAQQ-KACDAVPTLRCRSEVGQNALRLA--QLPVARAQLN--DATF-AASPEGKTLRTDLLQR 191 (987)
T ss_pred HHHhccChhHHHHHHHHHHhC-CCChhHHHHHHHHhhccchhhhh--hHHHHHHHHH--Hhhh-CCCCCcHHHHHHHHHH
Confidence 344455666666666666654 2223444444444 55 5544444444 2222 333 332333 3677
Q ss_pred HHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHhc-cCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCHHH
Q 046312 104 YAWSDRPREAVWVFIDMKRRGIKPTEFTYPFVLKACAE-ISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKRD 182 (514)
Q Consensus 104 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 182 (514)
|.+.|++++|++++.++.+.+ +.+..-...+-.++.. .++ +.+..+++. .++-++..+..+...|.+.|+.++
T Consensus 192 Y~~l~dw~~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~ 265 (987)
T PRK09782 192 AIYLKQWSQADTLYNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKAR 265 (987)
T ss_pred HHHHhCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHH
Confidence 888888888888888887764 2233335555556665 355 666666442 223566777788888888888888
Q ss_pred HHHHhhccCC-----CChh------------------------------hHHHHHHH-----------------------
Q 046312 183 ACKVFDDMCE-----RSVV------------------------------SWNVIITV----------------------- 204 (514)
Q Consensus 183 A~~~~~~~~~-----~~~~------------------------------~~~~li~~----------------------- 204 (514)
|.++++++.. |+.. ..-.++..
T Consensus 266 A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (987)
T PRK09782 266 LQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEML 345 (987)
T ss_pred HHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHH
Confidence 8888877721 1100 00000111
Q ss_pred ----------------------------------------HHhCCChhHHHHHHHHHHHC--CCCCCHHHHHHHHHHHhc
Q 046312 205 ----------------------------------------CVENLWLGEAVGYFVKMKDL--GFEPDETTMLVVLSACTE 242 (514)
Q Consensus 205 ----------------------------------------~~~~~~~~~a~~~~~~m~~~--~~~p~~~t~~~ll~~~~~ 242 (514)
..+.|+.++|..+|+..... ...++......++..+.+
T Consensus 346 ~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 425 (987)
T PRK09782 346 EERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLES 425 (987)
T ss_pred HHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHh
Confidence 23345555555555555441 112233333355555555
Q ss_pred cCChH---HHHH----------------------HHHHHHHh-CC-CC--chhHHHHHHHHHHhcCCHHHHHHHHHhcCc
Q 046312 243 LGNLS---LGKW----------------------VHLQLIER-GT-VL--NCQLGTALIDMYAKCGAVGCARLLFSRMEE 293 (514)
Q Consensus 243 ~g~~~---~a~~----------------------~~~~~~~~-~~-~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 293 (514)
.+.+. .+.. .+...... +. ++ +...+..+..++.. ++.++|...+.+...
T Consensus 426 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~ 504 (987)
T PRK09782 426 HPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQ 504 (987)
T ss_pred CCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHH
Confidence 44411 1111 11111111 11 22 45566666666665 677777776666553
Q ss_pred --CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCc-hHHH
Q 046312 294 --INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPM-RIHY 370 (514)
Q Consensus 294 --~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~ 370 (514)
|+......+...+...|++++|...|+++... .|+...+..+..++...|+.++|..+++...+. .|+ ...+
T Consensus 505 ~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l---~P~~~~l~ 579 (987)
T PRK09782 505 RQPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR---GLGDNALY 579 (987)
T ss_pred hCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCccHHHH
Confidence 44333223344445788888888888876543 344445556666777788888888888888764 333 3333
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhc
Q 046312 371 HTMADILARAGHLKEAYTFIMNMP-FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEV 449 (514)
Q Consensus 371 ~~li~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 449 (514)
..+...+.+.|++++|...+++.. ..|+...+..+...+.+.|+ .++|...++.+.+++|+++..+..++.++...
T Consensus 580 ~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~---~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~ 656 (987)
T PRK09782 580 WWLHAQRYIPGQPELALNDLTRSLNIAPSANAYVARATIYRQRHN---VPAAVSDLRAALELEPNNSNYQAALGYALWDS 656 (987)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 333344445688888888888776 66777778888888888888 88888888888888888888888888888888
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCceeEEEECCeEEEEEecccCCcChHHHHHHHHHHHHHh
Q 046312 450 GMWEKVSNVRRFMKNVGLKKMKGMSWVELGGSIHRFYSGYDSQVELAGIYQILETLNLHM 509 (514)
Q Consensus 450 g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~ 509 (514)
|++++|+..+++..+.. |.....| ..+...+...|++++|...+++..+..
T Consensus 657 G~~eeAi~~l~~AL~l~--P~~~~a~-------~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 657 GDIAQSREMLERAHKGL--PDDPALI-------RQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred CCHHHHHHHHHHHHHhC--CCCHHHH-------HHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 88888888888887644 3333334 456677788888888888888776543
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.7e-15 Score=155.20 Aligned_cols=414 Identities=11% Similarity=0.051 Sum_probs=252.4
Q ss_pred cChhHHHHHHHHHHHhCCCCCh--HHHHHHHHhcccCCCCChHHHHHHHcccCCCCCcccHHHH---HHHHHhCCCchHH
Q 046312 39 CSKKHLYQIHAQIQVSGLQNDA--QILKELVRFCTLSSSKNLTYARSILCNYVNDSVPIPWNNL---IRGYAWSDRPREA 113 (514)
Q Consensus 39 ~~~~~~~~~~~~~~~~g~~~~~--~~~~~ll~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~a 113 (514)
++...+...+....+.. |+. .++ .++..+. ..|+.++|+..+++.. .|+...+..+ ...+...|++++|
T Consensus 48 Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~--~~G~~~~A~~~~eka~-~p~n~~~~~llalA~ly~~~gdyd~A 121 (822)
T PRK14574 48 GDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAG--WAGRDQEVIDVYERYQ-SSMNISSRGLASAARAYRNEKRWDQA 121 (822)
T ss_pred CCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHH--HcCCcHHHHHHHHHhc-cCCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 44444444444444332 332 233 5555555 5666666666666665 4443333322 2345555666666
Q ss_pred HHHHHHHHHcCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCHHHHHHHhhccCC-
Q 046312 114 VWVFIDMKRRGIKPTEFTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKRDACKVFDDMCE- 192 (514)
Q Consensus 114 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~- 192 (514)
+++|+++.+.. +-+...+..++..+...++.++|++.++.+... .|+...+..++..+...++..+|.+.++++.+
T Consensus 122 iely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~ 198 (822)
T PRK14574 122 LALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRL 198 (822)
T ss_pred HHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHh
Confidence 66666665542 223344445555556666666666666666544 34444443333333334444446666666621
Q ss_pred -C-ChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHH------HHHHHHHH-----hccCChHH---HHHHHHHH
Q 046312 193 -R-SVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETT------MLVVLSAC-----TELGNLSL---GKWVHLQL 256 (514)
Q Consensus 193 -~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t------~~~ll~~~-----~~~g~~~~---a~~~~~~~ 256 (514)
| +...+..++.++.+.|-...|.++.++-.+. +.+...- ....++.- ....++.. |..-++.+
T Consensus 199 ~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l 277 (822)
T PRK14574 199 APTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNL 277 (822)
T ss_pred CCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHH
Confidence 2 3445555556666666666665544432110 1111100 00111100 01112222 33333333
Q ss_pred HHh-CCCCch-h----HHHHHHHHHHhcCCHHHHHHHHHhcCcC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 046312 257 IER-GTVLNC-Q----LGTALIDMYAKCGAVGCARLLFSRMEEI----NVWTWSAMILGLAQHGYAEEALELFSNMKNSS 326 (514)
Q Consensus 257 ~~~-~~~~~~-~----~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 326 (514)
... +..|.. . ..--.+-++...|++.++++.|+.+..+ ...+-..+..+|...+++++|+.+|+.+....
T Consensus 278 ~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~ 357 (822)
T PRK14574 278 LTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSD 357 (822)
T ss_pred HhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcc
Confidence 331 222321 1 1223355677889999999999999842 34566778899999999999999999987643
Q ss_pred -----CCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhC------------CCCc-hHHHHHHHHHHHhcCCHHHHHH
Q 046312 327 -----ISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHG------------IKPM-RIHYHTMADILARAGHLKEAYT 388 (514)
Q Consensus 327 -----~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~------------~~p~-~~~~~~li~~~~~~g~~~~A~~ 388 (514)
..++......|..++...+++++|..+++.+.+... ..|| ...+..++..+...|+..+|++
T Consensus 358 ~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~ 437 (822)
T PRK14574 358 GKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQK 437 (822)
T ss_pred ccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHH
Confidence 122334457788999999999999999999987311 1122 2234456777888999999999
Q ss_pred HHHhCC--CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 046312 389 FIMNMP--FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNV 465 (514)
Q Consensus 389 ~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 465 (514)
.++++. .+-|......+...+...|. ...|++.++.+..+.|++..+....+.++...|+|++|..+.+.+.+.
T Consensus 438 ~le~l~~~aP~n~~l~~~~A~v~~~Rg~---p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~ 513 (822)
T PRK14574 438 KLEDLSSTAPANQNLRIALASIYLARDL---PRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISR 513 (822)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 999986 44478888889999999999 999999999999999999999999999999999999998888776544
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.1e-15 Score=135.26 Aligned_cols=443 Identities=12% Similarity=0.119 Sum_probs=263.5
Q ss_pred hhHHHHHHHhhcChhHHHHHHHHHHHhCCCCChHHHHHHHHhcccCCCCChHHH-HHHHcccCC--CCCcccHHHHHHHH
Q 046312 28 ARQCLSFLKLCCSKKHLYQIHAQIQVSGLQNDAQILKELVRFCTLSSSKNLTYA-RSILCNYVN--DSVPIPWNNLIRGY 104 (514)
Q Consensus 28 ~~~~~~ll~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~g~~~~A-~~~~~~~~~--~~~~~~~~~li~~~ 104 (514)
-..++.+++. +...++--+++.|...|..-+..+--.|.+..+++.+.+.--| ++.|-.|.+ ..+..+|
T Consensus 119 E~nL~kmIS~-~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sW------- 190 (625)
T KOG4422|consen 119 ENNLLKMISS-REVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSW------- 190 (625)
T ss_pred hhHHHHHHhh-cccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccc-------
Confidence 3444444444 6788888999999999999888888777776553334443322 233333321 2222333
Q ss_pred HhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCHHHHH
Q 046312 105 AWSDRPREAVWVFIDMKRRGIKPTEFTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKRDAC 184 (514)
Q Consensus 105 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 184 (514)
+.|...+ ++.+. .+.+..+|.++|.++|+....+.|.+++++......+.+..+||.+|.+-.-..+ .
T Consensus 191 -K~G~vAd---L~~E~----~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K 258 (625)
T KOG4422|consen 191 -KSGAVAD---LLFET----LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----K 258 (625)
T ss_pred -ccccHHH---HHHhh----cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----H
Confidence 1222221 22221 2334456666666666666666666666665555445556666666554332222 3
Q ss_pred HHhhcc----CCCChhhHHHHHHHHHhCCChh----HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHH-HHHHHHH
Q 046312 185 KVFDDM----CERSVVSWNVIITVCVENLWLG----EAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSL-GKWVHLQ 255 (514)
Q Consensus 185 ~~~~~~----~~~~~~~~~~li~~~~~~~~~~----~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~-a~~~~~~ 255 (514)
+++.+| ..||..|+|+++.+..+.|+++ .|.+++.+|++.|+.|...+|..+|..+++.++..+ +..++.+
T Consensus 259 ~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~d 338 (625)
T KOG4422|consen 259 KLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWIND 338 (625)
T ss_pred HHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHH
Confidence 333333 4466666666666666666554 346677788888888888888888888777777644 3344444
Q ss_pred HHHh----CCCC----chhHHHHHHHHHHhcCCHHHHHHHHHhcCc--------C---CHHHHHHHHHHHHHcCChHHHH
Q 046312 256 LIER----GTVL----NCQLGTALIDMYAKCGAVGCARLLFSRMEE--------I---NVWTWSAMILGLAQHGYAEEAL 316 (514)
Q Consensus 256 ~~~~----~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~---~~~~~~~li~~~~~~~~~~~a~ 316 (514)
+... .+.| +...|..-+..|.+..+.+-|.++-.-... + ...-|..+....|+....+...
T Consensus 339 I~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~ 418 (625)
T KOG4422|consen 339 IQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTL 418 (625)
T ss_pred HHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4332 2222 334455566666677777777776655542 1 1234556677777778888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcC-CH--------H---
Q 046312 317 ELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAG-HL--------K--- 384 (514)
Q Consensus 317 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~--------~--- 384 (514)
.+|+.|.-.-.-|+..+...++++..-.|.++-..++|.+++.. |-.-+...-..+...+++.+ +. .
T Consensus 419 ~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~-ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ 497 (625)
T KOG4422|consen 419 KWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEY-GHTFRSDLREEILMLLARDKLHPLTPEREQLQVAF 497 (625)
T ss_pred HHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHh-hhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHH
Confidence 88888877666777788888888888888888888888877763 54444444444444444333 11 0
Q ss_pred --HHHHHHH-------hCC-CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcC---CCCCc--hHHHHHHHHHhc
Q 046312 385 --EAYTFIM-------NMP-FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELE---PRGSQ--NLVIVANKYAEV 449 (514)
Q Consensus 385 --~A~~~~~-------~~~-~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~---p~~~~--~~~~l~~~~~~~ 449 (514)
-|..+++ ++. ..-.....+.....+.+.|. .++|.+++..+.+.+ |..+. +..-+.+.-...
T Consensus 498 ak~aad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~---~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~ 574 (625)
T KOG4422|consen 498 AKCAADIKEAYESQPIRQRAQDWPATSLNCIAILLLRAGR---TQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVS 574 (625)
T ss_pred HHHHHHHHHHHHhhHHHHHhccCChhHHHHHHHHHHHcch---HHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhc
Confidence 1111111 111 33345566667777889999 999999999886654 43332 233666677778
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCceeEEEECCeEEEEEecccCCcChHHHHHHH
Q 046312 450 GMWEKVSNVRRFMKNVGLKKMKGMSWVELGGSIHRFYSGYDSQVELAGIYQIL 502 (514)
Q Consensus 450 g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 502 (514)
+..-+|..+++-|...+.+...+.. +.+..++.-.+.-.+|+.-+
T Consensus 575 ~spsqA~~~lQ~a~~~n~~~~E~La--------~RI~e~f~iNqeq~~~ls~l 619 (625)
T KOG4422|consen 575 NSPSQAIEVLQLASAFNLPICEGLA--------QRIMEDFAINQEQKEALSNL 619 (625)
T ss_pred CCHHHHHHHHHHHHHcCchhhhHHH--------HHHHHhcCcCHHHHHHHhhh
Confidence 8899999999999877775444333 23444444444444444433
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.5e-14 Score=146.74 Aligned_cols=394 Identities=10% Similarity=0.026 Sum_probs=292.0
Q ss_pred HHHHHHHhhcChhHHHHHHHHHHHhCCCCC---hHHHHHHHHhcccCCCCChHHHHHHHcccCC--CCCcccHHHHHHHH
Q 046312 30 QCLSFLKLCCSKKHLYQIHAQIQVSGLQND---AQILKELVRFCTLSSSKNLTYARSILCNYVN--DSVPIPWNNLIRGY 104 (514)
Q Consensus 30 ~~~~ll~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~ll~~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~ 104 (514)
-++.++...++...+...++... .|+ ......+...|. ..|+++.|..+++++.. +.++..+..++..+
T Consensus 73 dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~--~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y 146 (822)
T PRK14574 73 DWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYR--NEKRWDQALALWQSSLKKDPTNPDLISGMIMTQ 146 (822)
T ss_pred HHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHH--HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 44555556677777777766665 343 233333355777 88999999999999863 33456677788889
Q ss_pred HhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCHHHHH
Q 046312 105 AWSDRPREAVWVFIDMKRRGIKPTEFTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKRDAC 184 (514)
Q Consensus 105 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 184 (514)
...++.++|++.++++... .|+...+..++..+...++..+|++.++++.+.. +-+...+..+..++.+.|-...|.
T Consensus 147 ~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~ 223 (822)
T PRK14574 147 ADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPAL 223 (822)
T ss_pred hhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHH
Confidence 9999999999999999775 5666666555555545666666999999999885 446778888999999999999999
Q ss_pred HHhhccCCC---ChhhH--HHHHHHHHh---------CCC---hhHHHHHHHHHHHC-CCCCCHH-HH----HHHHHHHh
Q 046312 185 KVFDDMCER---SVVSW--NVIITVCVE---------NLW---LGEAVGYFVKMKDL-GFEPDET-TM----LVVLSACT 241 (514)
Q Consensus 185 ~~~~~~~~~---~~~~~--~~li~~~~~---------~~~---~~~a~~~~~~m~~~-~~~p~~~-t~----~~ll~~~~ 241 (514)
++..+-+.- ....+ ...+.-.++ ..+ .+.|+.-++.+... +-.|... .| .-.+-++.
T Consensus 224 ~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~ 303 (822)
T PRK14574 224 RLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALL 303 (822)
T ss_pred HHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHH
Confidence 998876421 11000 001111111 122 34456666665552 2224322 22 23456778
Q ss_pred ccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCcC---------CHHHHHHHHHHHHHcCCh
Q 046312 242 ELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEEI---------NVWTWSAMILGLAQHGYA 312 (514)
Q Consensus 242 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~~~~ 312 (514)
..|+..++.+.++.+...+.+....+-..+.++|...+++++|+.+|..+... +......|.-+|...+++
T Consensus 304 ~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~ 383 (822)
T PRK14574 304 VRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQL 383 (822)
T ss_pred HhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccH
Confidence 89999999999999999997767778899999999999999999999998542 233457789999999999
Q ss_pred HHHHHHHHHHHHCCC-----------CCC--H-HHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHH
Q 046312 313 EEALELFSNMKNSSI-----------SPN--Y-VTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILA 378 (514)
Q Consensus 313 ~~a~~~~~~m~~~g~-----------~p~--~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 378 (514)
++|..+++.+.+.-. .|| - ..+..++..+.-.|+..+|++.++++... -+-|......+.+.+.
T Consensus 384 ~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~--aP~n~~l~~~~A~v~~ 461 (822)
T PRK14574 384 DKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST--APANQNLRIALASIYL 461 (822)
T ss_pred HHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 999999999987311 132 2 23445667788999999999999999863 3556888889999999
Q ss_pred hcCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCc
Q 046312 379 RAGHLKEAYTFIMNMP-FQPN-PIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQ 437 (514)
Q Consensus 379 ~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 437 (514)
..|.+.+|.+.++.+. ..|+ ..+......++...++ +..|..+.+.+.+..|+++.
T Consensus 462 ~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e---~~~A~~~~~~l~~~~Pe~~~ 519 (822)
T PRK14574 462 ARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQE---WHQMELLTDDVISRSPEDIP 519 (822)
T ss_pred hcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhh---HHHHHHHHHHHHhhCCCchh
Confidence 9999999999998876 5554 5667778888999999 99999999999999999874
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.9e-14 Score=146.14 Aligned_cols=418 Identities=10% Similarity=0.004 Sum_probs=291.1
Q ss_pred HHHHHhhcChhHHHHHHHHHHHhCCCCChHHHHHHHHhcccCC-CCChHHHHHHHcccCCCCCcccHHHHHHHHHhCCCc
Q 046312 32 LSFLKLCCSKKHLYQIHAQIQVSGLQNDAQILKELVRFCTLSS-SKNLTYARSILCNYVNDSVPIPWNNLIRGYAWSDRP 110 (514)
Q Consensus 32 ~~ll~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 110 (514)
..+....++.+.+..++..+.+.+ ..+..-...|-.+|. . .++ +++..++.... ..++..+..+...+.+.|+.
T Consensus 189 ~rlY~~l~dw~~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~--q~l~~-~~a~al~~~~l-k~d~~l~~ala~~yi~~G~~ 263 (987)
T PRK09782 189 LQRAIYLKQWSQADTLYNEARQQN-TLSAAERRQWFDVLL--AGQLD-DRLLALQSQGI-FTDPQSRITYATALAYRGEK 263 (987)
T ss_pred HHHHHHHhCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH--HhhCH-HHHHHHhchhc-ccCHHHHHHHHHHHHHCCCH
Confidence 344455566677777777777776 333444555656666 5 355 77777766544 56777788888888888888
Q ss_pred hHHHHHHHHHHHcCCC-CCcchHHHH------------------------------HHHHhccCCchHHHHHH-------
Q 046312 111 REAVWVFIDMKRRGIK-PTEFTYPFV------------------------------LKACAEISGLNEGMQVQ------- 152 (514)
Q Consensus 111 ~~a~~~~~~m~~~~~~-p~~~~~~~l------------------------------l~~~~~~g~~~~a~~~~------- 152 (514)
++|.++++++...-.. |...++..+ +..+.+.++++.++++.
T Consensus 264 ~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (987)
T PRK09782 264 ARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANE 343 (987)
T ss_pred HHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcch
Confidence 8888888887543211 222222221 22333344444333332
Q ss_pred ----------------------HHHHHhCCCCCcchHHHHHHHHHcCCCHHHHHHHhhccCC--C----ChhhHHHHHHH
Q 046312 153 ----------------------ANVTKSGLDSDVYTNNNLVRFYGSCRRKRDACKVFDDMCE--R----SVVSWNVIITV 204 (514)
Q Consensus 153 ----------------------~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~----~~~~~~~li~~ 204 (514)
..|.+.. +-+......+.-...+.|+.++|.++|+...+ + +...-+-++..
T Consensus 344 ~~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~ 422 (987)
T PRK09782 344 MLEERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASL 422 (987)
T ss_pred HHHHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHH
Confidence 1111110 11333333344445678899999999988843 2 22344466777
Q ss_pred HHhCCC---hhHHHHH----------------------HHHHHHC-CC-CC--CHHHHHHHHHHHhccCChHHHHHHHHH
Q 046312 205 CVENLW---LGEAVGY----------------------FVKMKDL-GF-EP--DETTMLVVLSACTELGNLSLGKWVHLQ 255 (514)
Q Consensus 205 ~~~~~~---~~~a~~~----------------------~~~m~~~-~~-~p--~~~t~~~ll~~~~~~g~~~~a~~~~~~ 255 (514)
|.+.+. ..++..+ +...... +. ++ +...+..+..++.. ++.++|...+.+
T Consensus 423 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~ 501 (987)
T PRK09782 423 LESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQ 501 (987)
T ss_pred HHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHH
Confidence 777665 3333222 2222111 12 23 56667777777766 889899998888
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCc--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HH
Q 046312 256 LIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEE--INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPN-YV 332 (514)
Q Consensus 256 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~ 332 (514)
..... |+......+...+...|++++|...|+++.. ++...+..+...+.+.|+.++|..++++.++.. |+ ..
T Consensus 502 Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~ 577 (987)
T PRK09782 502 AEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNA 577 (987)
T ss_pred HHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHH
Confidence 87765 4544444455566789999999999998764 445566777888999999999999999998864 43 33
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHH
Q 046312 333 TFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP-FQP-NPIVLRALLSASS 410 (514)
Q Consensus 333 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~ 410 (514)
.+..+.......|++++|...+++..+. .|+...+..+...+.+.|+.++|...+++.. ..| +...+..+...+.
T Consensus 578 l~~~La~~l~~~Gr~~eAl~~~~~AL~l---~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~ 654 (987)
T PRK09782 578 LYWWLHAQRYIPGQPELALNDLTRSLNI---APSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALW 654 (987)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3334444555669999999999999864 6788889999999999999999999999986 555 5677888888999
Q ss_pred hcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 046312 411 IHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNVG 466 (514)
Q Consensus 411 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 466 (514)
..|+ .++|...++.+.+..|+++.++..++.++...|++++|...+++..+..
T Consensus 655 ~~G~---~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 655 DSGD---IAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HCCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 9999 9999999999999999999999999999999999999999999998654
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.7e-14 Score=142.14 Aligned_cols=400 Identities=11% Similarity=0.069 Sum_probs=195.5
Q ss_pred CCCcccHHHHHHHHHhCCCchHHHHHHHHHHHcCCC--CCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCc--ch
Q 046312 91 DSVPIPWNNLIRGYAWSDRPREAVWVFIDMKRRGIK--PTEFTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDV--YT 166 (514)
Q Consensus 91 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~--p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~ 166 (514)
..||++-+.|..-+.-.|++..++.+...+...... .-...|..+.+++-..|++++|...|.+..+. .++. ..
T Consensus 267 ~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~~l~ 344 (1018)
T KOG2002|consen 267 NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNFVLP 344 (1018)
T ss_pred CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCcccc
Confidence 345555666666666666666666666655443211 11224555666666666666666666555443 2332 22
Q ss_pred HHHHHHHHHcCCCHHHHHHHhhcc---CCCChhhHHHHHHHHHhCC----ChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 046312 167 NNNLVRFYGSCRRKRDACKVFDDM---CERSVVSWNVIITVCVENL----WLGEAVGYFVKMKDLGFEPDETTMLVVLSA 239 (514)
Q Consensus 167 ~~~li~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~~----~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~ 239 (514)
+-.|...|.+.|+++.+...|+.+ .+.+..+...|...|...+ ..+.|..++.+..+.- +-|...|..+...
T Consensus 345 ~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql 423 (1018)
T KOG2002|consen 345 LVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQL 423 (1018)
T ss_pred ccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHH
Confidence 334555666666666666666665 2223344444444444443 3345555555544432 3344455444444
Q ss_pred HhccCChHHHHHHHHH----HHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCc-------CCH------HHHHHH
Q 046312 240 CTELGNLSLGKWVHLQ----LIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEE-------INV------WTWSAM 302 (514)
Q Consensus 240 ~~~~g~~~~a~~~~~~----~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~~~------~~~~~l 302 (514)
+-. ++...+..++.. +...+-.+.+.+.|.+...+...|.+++|...|..... ++. .+-..+
T Consensus 424 ~e~-~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNl 502 (1018)
T KOG2002|consen 424 LEQ-TDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNL 502 (1018)
T ss_pred HHh-cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHH
Confidence 433 222222333332 23334445556666666666666666666666655432 111 112223
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcC
Q 046312 303 ILGLAQHGYAEEALELFSNMKNSSISPNYV-TFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAG 381 (514)
Q Consensus 303 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 381 (514)
...+-..++++.|.+.|..+.+. .|+.. .|..+....-..+...+|...+...... ..-++..+..+...+.+..
T Consensus 503 arl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~--d~~np~arsl~G~~~l~k~ 578 (1018)
T KOG2002|consen 503 ARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNI--DSSNPNARSLLGNLHLKKS 578 (1018)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhc--ccCCcHHHHHHHHHHHhhh
Confidence 33444445666666666666553 34322 2333332222335555566666655542 2233333334444555555
Q ss_pred CHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCC---------CCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 046312 382 HLKEAYTFIMNM----PFQPNPIVLRALLSASSIHDA---------KYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAE 448 (514)
Q Consensus 382 ~~~~A~~~~~~~----~~~p~~~~~~~l~~~~~~~~~---------~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 448 (514)
.+.-|.+-|..+ ...+|.++.-+|.+.|...-. ....++|.+.+.++++.+|.|..+-+.++-+++.
T Consensus 579 ~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~ 658 (1018)
T KOG2002|consen 579 EWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAE 658 (1018)
T ss_pred hhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhh
Confidence 555555533332 233455555555543321110 0114555555566666666655555556666666
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCCceeEEEECCeEEEEEecccCCcChHHHHHHHHHHHH
Q 046312 449 VGMWEKVSNVRRFMKNVGLKKMKGMSWVELGGSIHRFYSGYDSQVELAGIYQILETLNL 507 (514)
Q Consensus 449 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~ 507 (514)
.|++.+|..+|.+.++....-. ..|+ .+...|...|++..|.++|+..-.
T Consensus 659 kg~~~~A~dIFsqVrEa~~~~~--dv~l-------Nlah~~~e~~qy~~AIqmYe~~lk 708 (1018)
T KOG2002|consen 659 KGRFSEARDIFSQVREATSDFE--DVWL-------NLAHCYVEQGQYRLAIQMYENCLK 708 (1018)
T ss_pred ccCchHHHHHHHHHHHHHhhCC--ceee-------eHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666665443211 2242 455556666666666666655443
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.8e-13 Score=122.50 Aligned_cols=435 Identities=11% Similarity=0.065 Sum_probs=338.0
Q ss_pred CCChHHHHHHHHhcccCCCCChHHHHHHHcccCC--CCCcccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcc-hHH
Q 046312 57 QNDAQILKELVRFCTLSSSKNLTYARSILCNYVN--DSVPIPWNNLIRGYAWSDRPREAVWVFIDMKRRGIKPTEF-TYP 133 (514)
Q Consensus 57 ~~~~~~~~~ll~~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~ 133 (514)
..+...|-...+.=. ..+++..|+++|++... ..+...|-..+..-.++.....|..+|++.... -|-.. .|.
T Consensus 70 R~~~~~WikYaqwEe--sq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWy 145 (677)
T KOG1915|consen 70 RLNMQVWIKYAQWEE--SQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWY 145 (677)
T ss_pred HHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHH
Confidence 345566666666666 78899999999998753 556677888888889999999999999998774 34332 344
Q ss_pred HHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCHHHHHHHhhcc--CCCChhhHHHHHHHHHhCCCh
Q 046312 134 FVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKRDACKVFDDM--CERSVVSWNVIITVCVENLWL 211 (514)
Q Consensus 134 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~li~~~~~~~~~ 211 (514)
.-+..=-..|++..|.++|+...+. .|+...|++.|+.-.+-+.++.|..++++. +.|++.+|--....-.+.|+.
T Consensus 146 KY~ymEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~ 223 (677)
T KOG1915|consen 146 KYIYMEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNV 223 (677)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcH
Confidence 4444555679999999999998866 899999999999999999999999999997 789999999999999999999
Q ss_pred hHHHHHHHHHHHC-CC-CCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCC-chhHHHHHHHHHHhcCCHHHHHHHH
Q 046312 212 GEAVGYFVKMKDL-GF-EPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVL-NCQLGTALIDMYAKCGAVGCARLLF 288 (514)
Q Consensus 212 ~~a~~~~~~m~~~-~~-~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~ 288 (514)
..|..+|....+. |- ..+...|.+....=.+.+.++.|.-+|+-.++.-... ....|..+...--+-|+.....+..
T Consensus 224 ~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~I 303 (677)
T KOG1915|consen 224 ALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAI 303 (677)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHH
Confidence 9999999998875 21 1112233333333346678889999999888764322 2556666666666677766555443
Q ss_pred --------HhcCc---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-------HHHHHHHHH---hccCcH
Q 046312 289 --------SRMEE---INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYV-------TFLGVLCAC---NHAGMV 347 (514)
Q Consensus 289 --------~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-------~~~~ll~~~---~~~~~~ 347 (514)
+.+.+ -|-.+|--.+..-...|+.+...++|++.+.. ++|-.. .|..+=-+| ....++
T Consensus 304 v~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ 382 (677)
T KOG1915|consen 304 VGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDV 382 (677)
T ss_pred hhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 22333 35567777788888889999999999999875 555321 222222222 346899
Q ss_pred HHHHHHHHHHHHhhCCCCchHHHHHHHHH----HHhcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCCCcchHHH
Q 046312 348 EDGYRYFHEMEHVHGIKPMRIHYHTMADI----LARAGHLKEAYTFIMNMP-FQPNPIVLRALLSASSIHDAKYQDGVGN 422 (514)
Q Consensus 348 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~----~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~~~~a~ 422 (514)
+.+.++++...+ -++....||..+--+ ..++.++..|.+++..+. .-|-..++...|..-...++ ++...
T Consensus 383 ertr~vyq~~l~--lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~e---fDRcR 457 (677)
T KOG1915|consen 383 ERTRQVYQACLD--LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLRE---FDRCR 457 (677)
T ss_pred HHHHHHHHHHHh--hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhh---HHHHH
Confidence 999999999986 344456666654444 457899999999998875 67889999999999999999 99999
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCceeEEEECCeEEEEEecccCCcChHHHHHHH
Q 046312 423 EVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNVGLKKMKGMSWVELGGSIHRFYSGYDSQVELAGIYQIL 502 (514)
Q Consensus 423 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 502 (514)
.+.+++++.+|.+..+|...+..-...|+.+.|..+|.-......-..|..-| ...|.-....|.++.|-.+|
T Consensus 458 kLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellw-------kaYIdFEi~~~E~ekaR~LY 530 (677)
T KOG1915|consen 458 KLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLW-------KAYIDFEIEEGEFEKARALY 530 (677)
T ss_pred HHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHH-------HHhhhhhhhcchHHHHHHHH
Confidence 99999999999999999999999999999999999999998776666777778 67888889999999999999
Q ss_pred HHHHHHhh
Q 046312 503 ETLNLHMK 510 (514)
Q Consensus 503 ~~m~~~~~ 510 (514)
+++.++-+
T Consensus 531 erlL~rt~ 538 (677)
T KOG1915|consen 531 ERLLDRTQ 538 (677)
T ss_pred HHHHHhcc
Confidence 99887543
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.8e-13 Score=132.81 Aligned_cols=436 Identities=11% Similarity=0.038 Sum_probs=329.0
Q ss_pred CCChHHHHHHHHhcccCCCCChHHHHHHHcccCCCCC------cccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcc
Q 046312 57 QNDAQILKELVRFCTLSSSKNLTYARSILCNYVNDSV------PIPWNNLIRGYAWSDRPREAVWVFIDMKRRGIKPTEF 130 (514)
Q Consensus 57 ~~~~~~~~~ll~~~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 130 (514)
.-++.+.+.|.+.|- -.|++..+..+.+.+. ..+ ..+|-.+.++|...|++++|...|-+..+. .+|..
T Consensus 267 ~~nP~~l~~LAn~fy--fK~dy~~v~~la~~ai-~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~ 341 (1018)
T KOG2002|consen 267 NENPVALNHLANHFY--FKKDYERVWHLAEHAI-KNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNF 341 (1018)
T ss_pred CCCcHHHHHHHHHHh--hcccHHHHHHHHHHHH-HhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCc
Confidence 346788999999888 8999999999998875 222 245888999999999999999999877664 45553
Q ss_pred --hHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCC----CHHHHHHHhhccCC---CChhhHHHH
Q 046312 131 --TYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCR----RKRDACKVFDDMCE---RSVVSWNVI 201 (514)
Q Consensus 131 --~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~----~~~~A~~~~~~~~~---~~~~~~~~l 201 (514)
.+.-+...+...|+++.+...|+...+.. +-+..+...|...|...+ ..++|..++.+... .|...|-.+
T Consensus 342 ~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~l 420 (1018)
T KOG2002|consen 342 VLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLEL 420 (1018)
T ss_pred cccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 45567788999999999999999998873 445677777777787775 55777777777744 366677777
Q ss_pred HHHHHhCCChhHHHHHHHHHH----HCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHh---CCCC------chhHH
Q 046312 202 ITVCVENLWLGEAVGYFVKMK----DLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIER---GTVL------NCQLG 268 (514)
Q Consensus 202 i~~~~~~~~~~~a~~~~~~m~----~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~------~~~~~ 268 (514)
...+-...-+ .++.+|.... ..+-.+.....+.+.......|++..|...|...... ...+ +..+-
T Consensus 421 aql~e~~d~~-~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~ 499 (1018)
T KOG2002|consen 421 AQLLEQTDPW-ASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLK 499 (1018)
T ss_pred HHHHHhcChH-HHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHH
Confidence 7777655444 4477776544 4566688889999999999999999999999988766 1222 23344
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCc--CC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 046312 269 TALIDMYAKCGAVGCARLLFSRMEE--IN-VWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAG 345 (514)
Q Consensus 269 ~~li~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 345 (514)
..+..++-..++.+.|.+.|..+.+ |+ +..|..+.......+...+|...++...... ..++..+..+...+....
T Consensus 500 YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~ 578 (1018)
T KOG2002|consen 500 YNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKS 578 (1018)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhh
Confidence 5567777888999999999999987 33 3445455433444578889999999888742 344445555666778888
Q ss_pred cHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHh------------cCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHh
Q 046312 346 MVEDGYRYFHEMEHVHGIKPMRIHYHTMADILAR------------AGHLKEAYTFIMNMP--FQPNPIVLRALLSASSI 411 (514)
Q Consensus 346 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~------------~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~ 411 (514)
.+..|..-|..+.++....+|..+.-+|.+.|.+ .+..++|+++|.++. .+-|...-+.+.-.+..
T Consensus 579 ~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~ 658 (1018)
T KOG2002|consen 579 EWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAE 658 (1018)
T ss_pred hhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhh
Confidence 8888888777776653444677776677776543 245678999998875 33477888888888999
Q ss_pred cCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCceeEEEECCeEEEEEecccC
Q 046312 412 HDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNVGLKKMKGMSWVELGGSIHRFYSGYDS 491 (514)
Q Consensus 412 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (514)
.|+ ++.|..++..+.+-..+.+++|..++.+|..+|+|..|+++|+.....-.+.+...- ++.+..++..
T Consensus 659 kg~---~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~v-------l~~Lara~y~ 728 (1018)
T KOG2002|consen 659 KGR---FSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEV-------LHYLARAWYE 728 (1018)
T ss_pred ccC---chHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHH-------HHHHHHHHHH
Confidence 999 999999999999988777889999999999999999999999998766553332221 2567888999
Q ss_pred CcChHHHHHHHHHHHHHhh
Q 046312 492 QVELAGIYQILETLNLHMK 510 (514)
Q Consensus 492 ~~~~~~a~~~~~~m~~~~~ 510 (514)
.|...++.+.+...++..+
T Consensus 729 ~~~~~eak~~ll~a~~~~p 747 (1018)
T KOG2002|consen 729 AGKLQEAKEALLKARHLAP 747 (1018)
T ss_pred hhhHHHHHHHHHHHHHhCC
Confidence 9999999888777665544
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.8e-12 Score=119.28 Aligned_cols=414 Identities=11% Similarity=0.037 Sum_probs=316.8
Q ss_pred CCCChHHHHHHHcccCC--CCCcccHHHHHHHHHhCCCchHHHHHHHH----HHHcCCCCCcchHHHHHHHHhccCCchH
Q 046312 74 SSKNLTYARSILCNYVN--DSVPIPWNNLIRGYAWSDRPREAVWVFID----MKRRGIKPTEFTYPFVLKACAEISGLNE 147 (514)
Q Consensus 74 ~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~----m~~~~~~p~~~~~~~ll~~~~~~g~~~~ 147 (514)
+...++.|..++++..+ +.+...|.+-...--.+|+.+...+++++ +...|+..+...|..=...|-..|..-.
T Consensus 418 rLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~T 497 (913)
T KOG0495|consen 418 RLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVIT 497 (913)
T ss_pred HHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhh
Confidence 55668888888887653 45667787777777788998888888766 4556888888888888888999999999
Q ss_pred HHHHHHHHHHhCCCCC--cchHHHHHHHHHcCCCHHHHHHHhhccCC---CChhhHHHHHHHHHhCCChhHHHHHHHHHH
Q 046312 148 GMQVQANVTKSGLDSD--VYTNNNLVRFYGSCRRKRDACKVFDDMCE---RSVVSWNVIITVCVENLWLGEAVGYFVKMK 222 (514)
Q Consensus 148 a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 222 (514)
+..+....+..|+.-. ..||..-...|.+.+.++-|..+|....+ .+...|...+..--..|..++...+|++..
T Consensus 498 cQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav 577 (913)
T KOG0495|consen 498 CQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAV 577 (913)
T ss_pred HHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 9999988888876532 46788888889999999999998887733 456677777777777888899999999988
Q ss_pred HCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCc--CCHHHHH
Q 046312 223 DLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEE--INVWTWS 300 (514)
Q Consensus 223 ~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~ 300 (514)
..- +-....+.......-..|++..|..++.++.+.... +..++.+-+.....+.+++.|..+|.+... +....|.
T Consensus 578 ~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~sgTeRv~m 655 (913)
T KOG0495|consen 578 EQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWM 655 (913)
T ss_pred HhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhH
Confidence 762 334445555566667789999999999998888754 788888888999999999999999988764 6677777
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHh
Q 046312 301 AMILGLAQHGYAEEALELFSNMKNSSISPN-YVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILAR 379 (514)
Q Consensus 301 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 379 (514)
.-+...--.+..++|.+++++.++. -|+ ...|..+.+.+.+.++.+.|...|..=.+ .++-....|-.|.+.=-+
T Consensus 656 Ks~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k--~cP~~ipLWllLakleEk 731 (913)
T KOG0495|consen 656 KSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTK--KCPNSIPLWLLLAKLEEK 731 (913)
T ss_pred HHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccc--cCCCCchHHHHHHHHHHH
Confidence 7777777788899999999888874 455 45567777888888888888887776554 333345677777777778
Q ss_pred cCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCC-----------------------
Q 046312 380 AGHLKEAYTFIMNMP--FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPR----------------------- 434 (514)
Q Consensus 380 ~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~----------------------- 434 (514)
.|++-+|..+|++.. .+-+...|-..|..-.+.|+ .+.|...+.++.+--|.
T Consensus 732 ~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn---~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~D 808 (913)
T KOG0495|consen 732 DGQLVRARSILDRARLKNPKNALLWLESIRMELRAGN---KEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSID 808 (913)
T ss_pred hcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHH
Confidence 888888888888876 33367888888888888888 88888887777665444
Q ss_pred -------CCchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCceeEEEECCeEEEEEecccCCcChHHHHHHHHHH
Q 046312 435 -------GSQNLVIVANKYAEVGMWEKVSNVRRFMKNVGLKKMKGMSWVELGGSIHRFYSGYDSQVELAGIYQILETL 505 (514)
Q Consensus 435 -------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m 505 (514)
++.+....+..+....++++|.+-|.+....+..-...+.| |+.-+.++|.-++-.+++.+-
T Consensus 809 ALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~---------fykfel~hG~eed~kev~~~c 877 (913)
T KOG0495|consen 809 ALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAW---------FYKFELRHGTEEDQKEVLKKC 877 (913)
T ss_pred HHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHH---------HHHHHHHhCCHHHHHHHHHHH
Confidence 35566778888888888999999999887765443333444 667788888777777766654
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.1e-13 Score=135.61 Aligned_cols=363 Identities=13% Similarity=0.065 Sum_probs=253.9
Q ss_pred HHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCHHHHHHHhhcc---CCCChhhHHHHHHHHHhCCChh
Q 046312 136 LKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKRDACKVFDDM---CERSVVSWNVIITVCVENLWLG 212 (514)
Q Consensus 136 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~~~~~ 212 (514)
.+.+...|++++|..++.+.++.. +.+...|.+|..+|-..|+.+++...+-.. .+.|...|-.+.....+.|+++
T Consensus 146 AN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~ 224 (895)
T KOG2076|consen 146 ANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNIN 224 (895)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHH
Confidence 333444488888888888887775 456777888888888888888877765443 4456677888888888888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHH----HHHHHHHHhcCCHHHHHHHH
Q 046312 213 EAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLG----TALIDMYAKCGAVGCARLLF 288 (514)
Q Consensus 213 ~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~----~~li~~~~~~g~~~~A~~~~ 288 (514)
.|.-.|.+.++.. +++...+-.-...|-+.|+...|...+.++.....+.+..-+ ...++.+...++-+.|.+.+
T Consensus 225 qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~l 303 (895)
T KOG2076|consen 225 QARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKAL 303 (895)
T ss_pred HHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 8888888888764 445555555666777788888888888888776543332222 33455666677777777777
Q ss_pred HhcCc-----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC---------------------------CCCCCHHHHHH
Q 046312 289 SRMEE-----INVWTWSAMILGLAQHGYAEEALELFSNMKNS---------------------------SISPNYVTFLG 336 (514)
Q Consensus 289 ~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---------------------------g~~p~~~~~~~ 336 (514)
+.... .+...++.++..+.+...++.|......+... ++.++...+.
T Consensus 304 e~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~r- 382 (895)
T KOG2076|consen 304 EGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIR- 382 (895)
T ss_pred HHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHh-
Confidence 76553 34456777788888888888888877777651 1222322312
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHhhCCCC--chHHHHHHHHHHHhcCCHHHHHHHHHhCC---CCCCHHHHHHHHHHHHh
Q 046312 337 VLCACNHAGMVEDGYRYFHEMEHVHGIKP--MRIHYHTMADILARAGHLKEAYTFIMNMP---FQPNPIVLRALLSASSI 411 (514)
Q Consensus 337 ll~~~~~~~~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~p~~~~~~~l~~~~~~ 411 (514)
+.-++.+.+..+....+..-.... .+.| +...|.-+.++|...|++++|+.+|..+. ..-+...|--+...|..
T Consensus 383 l~icL~~L~~~e~~e~ll~~l~~~-n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~ 461 (895)
T KOG2076|consen 383 LMICLVHLKERELLEALLHFLVED-NVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYME 461 (895)
T ss_pred HhhhhhcccccchHHHHHHHHHHh-cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHH
Confidence 223444555555555555555554 5334 46788999999999999999999999996 22256789999999999
Q ss_pred cCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCceeEEEECCeEEEEEecccC
Q 046312 412 HDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNVGLKKMKGMSWVELGGSIHRFYSGYDS 491 (514)
Q Consensus 412 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (514)
.|. ++.|.+.++++....|++.++...|...|.+.|+.++|.+++..+...+....++..|..-..+......-+.+
T Consensus 462 l~e---~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~ 538 (895)
T KOG2076|consen 462 LGE---YEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQ 538 (895)
T ss_pred Hhh---HHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHH
Confidence 999 99999999999999999999999999999999999999999999875444445666662211111122233555
Q ss_pred CcChHHHHHHHHHH
Q 046312 492 QVELAGIYQILETL 505 (514)
Q Consensus 492 ~~~~~~a~~~~~~m 505 (514)
.|+.++=...-..|
T Consensus 539 ~gk~E~fi~t~~~L 552 (895)
T KOG2076|consen 539 VGKREEFINTASTL 552 (895)
T ss_pred hhhHHHHHHHHHHH
Confidence 56655544443333
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.8e-13 Score=119.41 Aligned_cols=398 Identities=10% Similarity=0.029 Sum_probs=261.7
Q ss_pred ccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHh--ccCCchHHH-HHHHH-----------------
Q 046312 95 IPWNNLIRGYAWSDRPREAVWVFIDMKRRGIKPTEFTYPFVLKACA--EISGLNEGM-QVQAN----------------- 154 (514)
Q Consensus 95 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~--~~g~~~~a~-~~~~~----------------- 154 (514)
.+-|.|+.. ..+|..+++.-+|+.|.+.|++.+...-..|++..+ ...++.-|+ +-|-.
T Consensus 117 ~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~v 195 (625)
T KOG4422|consen 117 ETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAV 195 (625)
T ss_pred cchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccH
Confidence 344555443 346777777778888877777666655444444322 111111110 11111
Q ss_pred --HHHhCCCCCcchHHHHHHHHHcCCCHHHHHHHhhcc----CCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC
Q 046312 155 --VTKSGLDSDVYTNNNLVRFYGSCRRKRDACKVFDDM----CERSVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEP 228 (514)
Q Consensus 155 --~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~----~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 228 (514)
+.-.-.+.+..++..||.++|+-...+.|.+++++- .+-+..+||.+|.+-.- ....+++.+|....+.|
T Consensus 196 AdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm~P 271 (625)
T KOG4422|consen 196 ADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMISQKMTP 271 (625)
T ss_pred HHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHHhhcCC
Confidence 111123557889999999999999999999999887 33477788888865332 22378899999999999
Q ss_pred CHHHHHHHHHHHhccCChHH----HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH-HHHHHHhcCc----------
Q 046312 229 DETTMLVVLSACTELGNLSL----GKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGC-ARLLFSRMEE---------- 293 (514)
Q Consensus 229 ~~~t~~~ll~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~~~~---------- 293 (514)
|..|||.++.+..+.|+++. |.+++.+|.+.|++|...+|..+|..+++.++..+ |..++.++..
T Consensus 272 nl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~ 351 (625)
T KOG4422|consen 272 NLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPI 351 (625)
T ss_pred chHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCC
Confidence 99999999999999998776 45788899999999999999999999999988865 4444444431
Q ss_pred --CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCC---HHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCC
Q 046312 294 --INVWTWSAMILGLAQHGYAEEALELFSNMKNS----SISPN---YVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIK 364 (514)
Q Consensus 294 --~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 364 (514)
.+...|...|..|.+..+.+-|.++-.-+... -+.|+ ..-|..+....|.....+.....|+.|+-. -.-
T Consensus 352 ~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~-~y~ 430 (625)
T KOG4422|consen 352 TPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPS-AYF 430 (625)
T ss_pred CCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-eec
Confidence 24566777788888888888888776655432 13344 234677778888888899999999999875 667
Q ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHHhCCC---CCCHHHHHHHHHHHHhcCCCCcch----------HHHHHHHHHH--
Q 046312 365 PMRIHYHTMADILARAGHLKEAYTFIMNMPF---QPNPIVLRALLSASSIHDAKYQDG----------VGNEVRRRLL-- 429 (514)
Q Consensus 365 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~p~~~~~~~l~~~~~~~~~~~~~~----------~a~~~~~~~~-- 429 (514)
|+..+...++++..-.|+++-.-+++.++.. .-+.....-++.-.++..-..... +....+..+.
T Consensus 431 p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~ 510 (625)
T KOG4422|consen 431 PHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYES 510 (625)
T ss_pred CCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888888888888888988888888877741 111111111222222222100000 0000111111
Q ss_pred ---hcC--CCCCchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCceeEEEECCeEE---EEEecccCCcChHHHHHH
Q 046312 430 ---ELE--PRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNVGLKKMKGMSWVELGGSIH---RFYSGYDSQVELAGIYQI 501 (514)
Q Consensus 430 ---~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~a~~~ 501 (514)
++. .-.+......+-.+.+.|+.++|.+++..+...+-. .|++ .+.| +++.+..+...+.+|...
T Consensus 511 ~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~-ip~~------p~lnAm~El~d~a~~~~spsqA~~~ 583 (625)
T KOG4422|consen 511 QPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNK-IPRS------PLLNAMAELMDSAKVSNSPSQAIEV 583 (625)
T ss_pred hHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCc-CCCC------cchhhHHHHHHHHHhcCCHHHHHHH
Confidence 111 112345667888889999999999999999755543 1111 1224 556677777888888888
Q ss_pred HHHH
Q 046312 502 LETL 505 (514)
Q Consensus 502 ~~~m 505 (514)
++-+
T Consensus 584 lQ~a 587 (625)
T KOG4422|consen 584 LQLA 587 (625)
T ss_pred HHHH
Confidence 7766
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.4e-12 Score=118.26 Aligned_cols=380 Identities=9% Similarity=-0.010 Sum_probs=246.1
Q ss_pred hHHHHHHHHhcccCCCCChHHHHHHHcccCC---CCCc-ccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCc--ch--
Q 046312 60 AQILKELVRFCTLSSSKNLTYARSILCNYVN---DSVP-IPWNNLIRGYAWSDRPREAVWVFIDMKRRGIKPTE--FT-- 131 (514)
Q Consensus 60 ~~~~~~ll~~~~~~~~g~~~~A~~~~~~~~~---~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~-- 131 (514)
-.+...|.+-|. ......+|+..++-+.. .|+. ..--.+-..+.+...+.+|+++|+..... .|+. .+
T Consensus 201 fsvl~nlaqqy~--~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldq--vpsink~~ri 276 (840)
T KOG2003|consen 201 FSVLFNLAQQYE--ANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQ--VPSINKDMRI 276 (840)
T ss_pred HHHHHHHHHHhh--hhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhh--ccccchhhHH
Confidence 345556667777 67778888888876542 1222 11112234455556666666666554443 2222 11
Q ss_pred --HHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCHHHHHHHhhccCC-----------------
Q 046312 132 --YPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKRDACKVFDDMCE----------------- 192 (514)
Q Consensus 132 --~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~----------------- 192 (514)
.+.+--.+.+.|+++.|+..|+...+. .|+..+-..|+-++..-|+-++..+.|.+|..
T Consensus 277 kil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp 354 (840)
T KOG2003|consen 277 KILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDP 354 (840)
T ss_pred HHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCc
Confidence 222222345666666666666666555 45554444455555555666666666655511
Q ss_pred -----------------------------------------CCh-------------hhHHH--------HHHHHHhCCC
Q 046312 193 -----------------------------------------RSV-------------VSWNV--------IITVCVENLW 210 (514)
Q Consensus 193 -----------------------------------------~~~-------------~~~~~--------li~~~~~~~~ 210 (514)
|+- ..+.. -...+.++|+
T Consensus 355 ~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d 434 (840)
T KOG2003|consen 355 DDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGD 434 (840)
T ss_pred chHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccC
Confidence 100 00100 1124778899
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHH--HHHH----------------------------------HhccCChHHHHHHHH
Q 046312 211 LGEAVGYFVKMKDLGFEPDETTMLV--VLSA----------------------------------CTELGNLSLGKWVHL 254 (514)
Q Consensus 211 ~~~a~~~~~~m~~~~~~p~~~t~~~--ll~~----------------------------------~~~~g~~~~a~~~~~ 254 (514)
++.|+++++-+.+..-+.-...-+. ++.. ....|+++.|...++
T Consensus 435 ~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~yk 514 (840)
T KOG2003|consen 435 IEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYK 514 (840)
T ss_pred HHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHH
Confidence 9999999888765432211111111 1111 112456777777777
Q ss_pred HHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCc---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH
Q 046312 255 QLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEE---INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNY 331 (514)
Q Consensus 255 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 331 (514)
+.+...-.-....||. .-.+-..|++++|++.|-++.. .+......+...|-...+..+|++++...... ++.|+
T Consensus 515 eal~ndasc~ealfni-glt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp 592 (840)
T KOG2003|consen 515 EALNNDASCTEALFNI-GLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDP 592 (840)
T ss_pred HHHcCchHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCH
Confidence 7776554333334432 2345667888888888876653 56667777777788888888888888665542 44557
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHH-
Q 046312 332 VTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP-FQPNPIVLRALLSAS- 409 (514)
Q Consensus 332 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~- 409 (514)
.....|...|-+.|+-.+|.+.+-+--+ -++.+..+...|...|....-+++|+..|++.. +.|+..-|..++..|
T Consensus 593 ~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~ 670 (840)
T KOG2003|consen 593 AILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCF 670 (840)
T ss_pred HHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHH
Confidence 7788888999999999999888766654 456678888888899999999999999999987 899999999888766
Q ss_pred HhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCH
Q 046312 410 SIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMW 452 (514)
Q Consensus 410 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 452 (514)
.+.|+ +++|...++...+..|.+.+.+..|++.+...|..
T Consensus 671 rrsgn---yqka~d~yk~~hrkfpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 671 RRSGN---YQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred Hhccc---HHHHHHHHHHHHHhCccchHHHHHHHHHhccccch
Confidence 46778 99999999999999999999999999999888753
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.7e-15 Score=139.56 Aligned_cols=254 Identities=17% Similarity=0.104 Sum_probs=108.5
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCCHHHH-HHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 046312 202 ITVCVENLWLGEAVGYFVKMKDLGFEPDETTM-LVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGA 280 (514)
Q Consensus 202 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~-~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 280 (514)
...+.+.|++++|++++++......+|+...| ..+...+...++.+.|...++.+...+.. +...+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence 44555666666666666544333212333333 33333444566677777777776665533 45556666666 57777
Q ss_pred HHHHHHHHHhcCc--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccCcHHHHHHHHHHH
Q 046312 281 VGCARLLFSRMEE--INVWTWSAMILGLAQHGYAEEALELFSNMKNSS-ISPNYVTFLGVLCACNHAGMVEDGYRYFHEM 357 (514)
Q Consensus 281 ~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 357 (514)
+++|.++++..-+ ++...+..++..+.+.++++++..+++++.... .+.+...|..+...+.+.|+.++|.+.+++.
T Consensus 93 ~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a 172 (280)
T PF13429_consen 93 PEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKA 172 (280)
T ss_dssp -------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7777777766533 556667777888888899999999998877532 3456677778888888999999999999999
Q ss_pred HHhhCCCCc-hHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCC
Q 046312 358 EHVHGIKPM-RIHYHTMADILARAGHLKEAYTFIMNMP--FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPR 434 (514)
Q Consensus 358 ~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~ 434 (514)
.+. .|+ ......++..+...|+.+++.++++... .+.|...+..+..++...|+ .+.|...++++.+.+|+
T Consensus 173 l~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~---~~~Al~~~~~~~~~~p~ 246 (280)
T PF13429_consen 173 LEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGR---YEEALEYLEKALKLNPD 246 (280)
T ss_dssp HHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT----HHHHHHHHHHHHHHSTT
T ss_pred HHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccc---ccccccccccccccccc
Confidence 875 564 6677888888889999998877777664 33455677888899999999 99999999999999999
Q ss_pred CCchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 046312 435 GSQNLVIVANKYAEVGMWEKVSNVRRFMK 463 (514)
Q Consensus 435 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 463 (514)
++.....++.++...|+.++|.++.++..
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp -HHHHHHHHHHHT----------------
T ss_pred ccccccccccccccccccccccccccccc
Confidence 99999999999999999999999988764
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.4e-12 Score=124.25 Aligned_cols=284 Identities=11% Similarity=0.015 Sum_probs=137.6
Q ss_pred CCCchHHHHHHHHHHHcCCCCCcc-hHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHH--HHHHHHHcCCCHHHH
Q 046312 107 SDRPREAVWVFIDMKRRGIKPTEF-TYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNN--NLVRFYGSCRRKRDA 183 (514)
Q Consensus 107 ~g~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--~li~~~~~~~~~~~A 183 (514)
.|+++.|.+.+....+.. +++. .|.....+..+.|+.+.|...+.++.+. .|+..... .....+...|++++|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 355555555554433321 1111 1222233335556666666666655543 33332221 223455555555555
Q ss_pred HHHhhccC---CCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhC
Q 046312 184 CKVFDDMC---ERSVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERG 260 (514)
Q Consensus 184 ~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 260 (514)
...++++. +.+......+...|.+.|+|++|.+++..+.+.+..++. ....+-
T Consensus 173 l~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l~----------------------- 228 (398)
T PRK10747 173 RHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAMLE----------------------- 228 (398)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHHH-----------------------
Confidence 55555552 223445555555566666666666666666555433211 111000
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCc---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 046312 261 TVLNCQLGTALIDMYAKCGAVGCARLLFSRMEE---INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGV 337 (514)
Q Consensus 261 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 337 (514)
...|..++.......+.+...++++.+.+ .++.....+...+...|+.++|..++++..+. .|+.... +
T Consensus 229 ----~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~ 300 (398)
T PRK10747 229 ----QQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--L 300 (398)
T ss_pred ----HHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--H
Confidence 01112222222223334444444444432 34555555666666666666666666665552 3333211 2
Q ss_pred HHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCCC
Q 046312 338 LCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP-FQPNPIVLRALLSASSIHDAKY 416 (514)
Q Consensus 338 l~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~ 416 (514)
+.+....++.+++.+..+...++ .+-|...+..+...+.+.|++++|.+.|+.+. ..|+...+..+...+...|+
T Consensus 301 l~~~l~~~~~~~al~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~-- 376 (398)
T PRK10747 301 LIPRLKTNNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHK-- 376 (398)
T ss_pred HHhhccCCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC--
Confidence 22333446666666666666543 12224445555666666666666666666654 55666666666666666666
Q ss_pred cchHHHHHHHHHHhc
Q 046312 417 QDGVGNEVRRRLLEL 431 (514)
Q Consensus 417 ~~~~a~~~~~~~~~~ 431 (514)
.++|.+.+++...+
T Consensus 377 -~~~A~~~~~~~l~~ 390 (398)
T PRK10747 377 -PEEAAAMRRDGLML 390 (398)
T ss_pred -HHHHHHHHHHHHhh
Confidence 66666666655443
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.4e-10 Score=105.80 Aligned_cols=213 Identities=13% Similarity=0.144 Sum_probs=169.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCcCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 046312 265 CQLGTALIDMYAKCGAVGCARLLFSRMEEIN---VWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCAC 341 (514)
Q Consensus 265 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 341 (514)
+.|.-.+.+.|+-.++.++|...|++..+.| ...|+.+..-|....+...|.+-++..++-. +-|...|-.|.++|
T Consensus 330 ~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaY 408 (559)
T KOG1155|consen 330 PETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAY 408 (559)
T ss_pred ccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHH
Confidence 4455566777888889999999999988733 4678888899999999999999999998853 55778899999999
Q ss_pred hccCcHHHHHHHHHHHHHhhCCCC-chHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCCCcc
Q 046312 342 NHAGMVEDGYRYFHEMEHVHGIKP-MRIHYHTMADILARAGHLKEAYTFIMNMP--FQPNPIVLRALLSASSIHDAKYQD 418 (514)
Q Consensus 342 ~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~~ 418 (514)
.-.+...-|+-+|++... ++| |...|.+|.++|.+.++.++|.+-|.+.. ...+...+..|...+...++ .
T Consensus 409 eim~Mh~YaLyYfqkA~~---~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d---~ 482 (559)
T KOG1155|consen 409 EIMKMHFYALYYFQKALE---LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKD---L 482 (559)
T ss_pred HHhcchHHHHHHHHHHHh---cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHh---H
Confidence 999999999999999874 355 58899999999999999999999998885 23355888889999999999 9
Q ss_pred hHHHHHHHHHHhc-------CCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCceeEEEECCeEEEEEecccC
Q 046312 419 GVGNEVRRRLLEL-------EPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNVGLKKMKGMSWVELGGSIHRFYSGYDS 491 (514)
Q Consensus 419 ~~a~~~~~~~~~~-------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (514)
++|...+++..+. .|....+..-|+.-+.+.+++++|..+......-
T Consensus 483 ~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~-------------------------- 536 (559)
T KOG1155|consen 483 NEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG-------------------------- 536 (559)
T ss_pred HHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC--------------------------
Confidence 9999988888763 2333334456888888999999998877655332
Q ss_pred CcChHHHHHHHHHHHHHhh
Q 046312 492 QVELAGIYQILETLNLHMK 510 (514)
Q Consensus 492 ~~~~~~a~~~~~~m~~~~~ 510 (514)
....++|-.+++++++.+.
T Consensus 537 ~~e~eeak~LlReir~~~~ 555 (559)
T KOG1155|consen 537 ETECEEAKALLREIRKIQA 555 (559)
T ss_pred CchHHHHHHHHHHHHHhcC
Confidence 2356788888888887664
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.59 E-value=8.5e-13 Score=128.07 Aligned_cols=285 Identities=9% Similarity=-0.056 Sum_probs=131.1
Q ss_pred CCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 046312 208 NLWLGEAVGYFVKMKDLGFEPD-ETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARL 286 (514)
Q Consensus 208 ~~~~~~a~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 286 (514)
.|+++.|.+.+.+..+. .|+ ...+.....+..+.|+.+.+.+++....+....+...+.......+...|+++.|.+
T Consensus 97 ~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred CCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 45555555555554443 222 222333344445555555555555555443322222233333555555556666655
Q ss_pred HHHhcCc--C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH---hccCcHHHHHHHHHHHHHh
Q 046312 287 LFSRMEE--I-NVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCAC---NHAGMVEDGYRYFHEMEHV 360 (514)
Q Consensus 287 ~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~---~~~~~~~~a~~~~~~~~~~ 360 (514)
.++.+.+ | +...+..+...+...|++++|.+++..+.+.++.+.......-..++ ...+..+.+...+..+.+.
T Consensus 175 ~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~ 254 (409)
T TIGR00540 175 GVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKN 254 (409)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 5555543 2 34455555556666666666666666666554322211111111111 1112222222233333322
Q ss_pred h--CCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCHHHHH-HHHHH--HHhcCCCCcchHHHHHHHHHHhcCCC
Q 046312 361 H--GIKPMRIHYHTMADILARAGHLKEAYTFIMNMP-FQPNPIVLR-ALLSA--SSIHDAKYQDGVGNEVRRRLLELEPR 434 (514)
Q Consensus 361 ~--~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~-~l~~~--~~~~~~~~~~~~a~~~~~~~~~~~p~ 434 (514)
. ..+.+...+..+...+...|+.++|.+++++.. ..||..... .++.. ....++ .+.+.+.++...+..|+
T Consensus 255 ~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~---~~~~~~~~e~~lk~~p~ 331 (409)
T TIGR00540 255 QPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPED---NEKLEKLIEKQAKNVDD 331 (409)
T ss_pred CCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCC---hHHHHHHHHHHHHhCCC
Confidence 0 001245555555666666666666666665554 234332100 01111 122233 55556666666666666
Q ss_pred CC--chHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCceeEEEECCeEEEEEecccCCcChHHHHHHHHHH
Q 046312 435 GS--QNLVIVANKYAEVGMWEKVSNVRRFMKNVGLKKMKGMSWVELGGSIHRFYSGYDSQVELAGIYQILETL 505 (514)
Q Consensus 435 ~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m 505 (514)
++ ....++++.+.+.|++++|.+.|+........|.+... ..+..-+...|+.++|.++|++-
T Consensus 332 ~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~--------~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 332 KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDL--------AMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHH--------HHHHHHHHHcCCHHHHHHHHHHH
Confidence 66 55556666666666666666666633222222222221 13344455566666666666553
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.9e-14 Score=132.61 Aligned_cols=253 Identities=15% Similarity=0.107 Sum_probs=65.6
Q ss_pred HHHHHhCCCchHHHHHHHHHHHcCCCCCcc-hHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCC
Q 046312 101 IRGYAWSDRPREAVWVFIDMKRRGIKPTEF-TYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRR 179 (514)
Q Consensus 101 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 179 (514)
...+.+.|++++|+++++.......+|+.. -|..+...+...++.+.|.+.++++...+ +-++..+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccccc
Confidence 444555566666666664433332123332 23333334445566666666666665554 2244445555554 45566
Q ss_pred HHHHHHHhhccC--CCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccCChHHHHHHHHHH
Q 046312 180 KRDACKVFDDMC--ERSVVSWNVIITVCVENLWLGEAVGYFVKMKDLG-FEPDETTMLVVLSACTELGNLSLGKWVHLQL 256 (514)
Q Consensus 180 ~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~ 256 (514)
+++|.++++... .++...+..++..+.+.++++++..+++...... .+.+...|..+...+.+.|+.++|...+++.
T Consensus 93 ~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a 172 (280)
T PF13429_consen 93 PEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKA 172 (280)
T ss_dssp -------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 666655555442 2334445555555556666666666666554321 2334444555555555556666666666555
Q ss_pred HHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCc---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH
Q 046312 257 IERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEE---INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVT 333 (514)
Q Consensus 257 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 333 (514)
++..+. |..+...++..+...|+.+++.++++...+ .|...|..+..+|...|+.++|+.+|++..+.. +.|...
T Consensus 173 l~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~ 250 (280)
T PF13429_consen 173 LELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLW 250 (280)
T ss_dssp HHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHH
T ss_pred HHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccc-cccccc
Confidence 555422 344445555555555555554444443332 334444555555555555555555555554421 223444
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHH
Q 046312 334 FLGVLCACNHAGMVEDGYRYFHEM 357 (514)
Q Consensus 334 ~~~ll~~~~~~~~~~~a~~~~~~~ 357 (514)
...+..++...|+.++|..+..++
T Consensus 251 ~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 251 LLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHHHHHT---------------
T ss_pred cccccccccccccccccccccccc
Confidence 445555555555555555554443
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.9e-10 Score=109.19 Aligned_cols=366 Identities=11% Similarity=0.010 Sum_probs=248.4
Q ss_pred cHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHH
Q 046312 96 PWNNLIRGYAWSDRPREAVWVFIDMKRRGIKPTEFTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYG 175 (514)
Q Consensus 96 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 175 (514)
+|+.-...|.+.+.++-|..+|....+. .+-+...|......--..|..+....++++++..- +.....|.....-+-
T Consensus 518 tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w 595 (913)
T KOG0495|consen 518 TWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKW 595 (913)
T ss_pred HHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHH
Confidence 4444555555566666666666666554 23344455555555555677777777777776652 334445555556666
Q ss_pred cCCCHHHHHHHhhcc---CCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHH
Q 046312 176 SCRRKRDACKVFDDM---CERSVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWV 252 (514)
Q Consensus 176 ~~~~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~ 252 (514)
..|++..|..++... ...+...|-+.+.......+++.|..+|.+.... .|+...|.--++.-.-.++.++|.++
T Consensus 596 ~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rl 673 (913)
T KOG0495|consen 596 KAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRL 673 (913)
T ss_pred hcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHH
Confidence 677777777777666 2235556777777777777777777777776654 45555555444444556777777777
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCc--C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 046312 253 HLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEE--I-NVWTWSAMILGLAQHGYAEEALELFSNMKNSSISP 329 (514)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 329 (514)
+++.++.- +.-...|-.+...+-+.++.+.|.+.|..-.+ | .+..|-.+...--+.|+.-+|..++++.+..+ +-
T Consensus 674 lEe~lk~f-p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk 751 (913)
T KOG0495|consen 674 LEEALKSF-PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PK 751 (913)
T ss_pred HHHHHHhC-CchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CC
Confidence 77776653 22345666667777777777777777776654 3 34567777676677777777777777776653 34
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 046312 330 NYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMPFQPNPIVLRALLSAS 409 (514)
Q Consensus 330 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~ 409 (514)
+...|...|+.-.+.|..+.|..++.+..+ .++.+...|..-|....+.++-....+.+++.. .|+...-.+...+
T Consensus 752 ~~~lwle~Ir~ElR~gn~~~a~~lmakALQ--ecp~sg~LWaEaI~le~~~~rkTks~DALkkce--~dphVllaia~lf 827 (913)
T KOG0495|consen 752 NALLWLESIRMELRAGNKEQAELLMAKALQ--ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE--HDPHVLLAIAKLF 827 (913)
T ss_pred cchhHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCccchhHHHHHHhccCcccchHHHHHHHhcc--CCchhHHHHHHHH
Confidence 556677777777777877777777777776 445556667777766666666666666666655 3455555556666
Q ss_pred HhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCceeEE
Q 046312 410 SIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNVGLKKMKGMSWV 476 (514)
Q Consensus 410 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 476 (514)
..... ++++.+-+.++.+.+|++.++|.-+...+.+.|.-++-.+++.+.... +|+-|..|+
T Consensus 828 w~e~k---~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~--EP~hG~~W~ 889 (913)
T KOG0495|consen 828 WSEKK---IEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA--EPTHGELWQ 889 (913)
T ss_pred HHHHH---HHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCCCcHHH
Confidence 66667 999999999999999999999999999999999999999999988654 366677783
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.1e-11 Score=116.50 Aligned_cols=275 Identities=8% Similarity=-0.006 Sum_probs=198.5
Q ss_pred CCCHHHHHHHhhccCCC--Chh-hHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHH--HHHHHHhccCChHHHHH
Q 046312 177 CRRKRDACKVFDDMCER--SVV-SWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTML--VVLSACTELGNLSLGKW 251 (514)
Q Consensus 177 ~~~~~~A~~~~~~~~~~--~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~--~ll~~~~~~g~~~~a~~ 251 (514)
.|++++|++.+....+. +.. .|-....+..+.|+++.|...+.++.+. .|+..... .....+...|+++.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 57777777777665332 122 2333334446778888888888877664 44443222 33556677788888888
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCcC---CH--------HHHHHHHHHHHHcCChHHHHHHHH
Q 046312 252 VHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEEI---NV--------WTWSAMILGLAQHGYAEEALELFS 320 (514)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~--------~~~~~li~~~~~~~~~~~a~~~~~ 320 (514)
.++.+.+... -+......+...|.+.|++++|.+++..+.+. +. ..|..++.......+.+...++|+
T Consensus 175 ~l~~~~~~~P-~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVAP-RHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcCC-CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 8888777663 35667777788888888888888777777641 11 234444444455566777777777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-C
Q 046312 321 NMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP-FQP-N 398 (514)
Q Consensus 321 ~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~ 398 (514)
.+-+. .+.+......+..++...|+.++|..++++..+. .|+.... ++.+....++.+++++.+++.. ..| |
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~ 327 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDT 327 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCC
Confidence 76543 3456778888999999999999999999999864 5555332 2333445699999999998875 445 4
Q ss_pred HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 046312 399 PIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKN 464 (514)
Q Consensus 399 ~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 464 (514)
...+.++...|...++ +++|.+.++.+.+..|++. .+..++.++.+.|+.++|.+++++-..
T Consensus 328 ~~l~l~lgrl~~~~~~---~~~A~~~le~al~~~P~~~-~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 328 PLLWSTLGQLLMKHGE---WQEASLAFRAALKQRPDAY-DYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHHHCCC---HHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5668889999999999 9999999999999999854 678999999999999999999998754
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.55 E-value=8.1e-12 Score=121.24 Aligned_cols=286 Identities=11% Similarity=-0.016 Sum_probs=140.0
Q ss_pred CCCchHHHHHHHHHHHcCCCCCcch-HHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcc--hHHHHHHHHHcCCCHHHH
Q 046312 107 SDRPREAVWVFIDMKRRGIKPTEFT-YPFVLKACAEISGLNEGMQVQANVTKSGLDSDVY--TNNNLVRFYGSCRRKRDA 183 (514)
Q Consensus 107 ~g~~~~a~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~~~~~~~A 183 (514)
.|+++.|.+.+.+..+. .|+... +.....+....|+.+.|.+.+.+..+. .|+.. +.......+...|+++.|
T Consensus 97 ~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred CCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHHHH
Confidence 45555555555544332 233222 222234444555555555555555433 22221 222234444555555555
Q ss_pred HHHhhccC---CCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHH-HHHHHhccCChHHHHHHHHHHHHh
Q 046312 184 CKVFDDMC---ERSVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLV-VLSACTELGNLSLGKWVHLQLIER 259 (514)
Q Consensus 184 ~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~-ll~~~~~~g~~~~a~~~~~~~~~~ 259 (514)
...++.+. +.+...+..+...+.+.|++++|.+.+..+.+.++. +...+.. -..+
T Consensus 173 l~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a-------------------- 231 (409)
T TIGR00540 173 RHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKA-------------------- 231 (409)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHH--------------------
Confidence 55555541 123344445555555555555555555555554422 1111110 0000
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCc---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH--H
Q 046312 260 GTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEE---INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVT--F 334 (514)
Q Consensus 260 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~--~ 334 (514)
+..++..-......+...+.++...+ .+...+..+...+...|+.++|.+++++..+.. ||... +
T Consensus 232 --------~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~ 301 (409)
T TIGR00540 232 --------EIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISL 301 (409)
T ss_pred --------HHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchh
Confidence 00001110111122333334444432 356666666677777777777777777776642 33221 1
Q ss_pred -HHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHh--C-CCCCCHHHHHHHHHHHH
Q 046312 335 -LGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMN--M-PFQPNPIVLRALLSASS 410 (514)
Q Consensus 335 -~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~--~-~~~p~~~~~~~l~~~~~ 410 (514)
..........++.+.+.+.++...+...-.|+.....++...+.+.|++++|.+.|+. . ...|+...+..+...+.
T Consensus 302 ~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~ 381 (409)
T TIGR00540 302 PLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFD 381 (409)
T ss_pred HHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHH
Confidence 1111122334666667777766665422222114455667777777777777777773 2 25677776777777777
Q ss_pred hcCCCCcchHHHHHHHHHHh
Q 046312 411 IHDAKYQDGVGNEVRRRLLE 430 (514)
Q Consensus 411 ~~~~~~~~~~a~~~~~~~~~ 430 (514)
..|+ .++|.+++++...
T Consensus 382 ~~g~---~~~A~~~~~~~l~ 398 (409)
T TIGR00540 382 QAGD---KAEAAAMRQDSLG 398 (409)
T ss_pred HcCC---HHHHHHHHHHHHH
Confidence 7777 7777777776544
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.54 E-value=2e-10 Score=113.22 Aligned_cols=458 Identities=12% Similarity=0.081 Sum_probs=315.3
Q ss_pred HHHHhhcChhHHHHHHHHHHHhCCCCChHHHHHHHHhcccCCCCChHHHHHHHcccCC--CCCcccHHHHHHHHHhCCCc
Q 046312 33 SFLKLCCSKKHLYQIHAQIQVSGLQNDAQILKELVRFCTLSSSKNLTYARSILCNYVN--DSVPIPWNNLIRGYAWSDRP 110 (514)
Q Consensus 33 ~ll~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~ 110 (514)
..+-+.++...+..+....++.. +.....|..|-..|- ..|+.+.+...+-...+ +.|..-|-.+-....+.|++
T Consensus 147 N~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyE--qrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i 223 (895)
T KOG2076|consen 147 NNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYE--QRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNI 223 (895)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHH--HcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccH
Confidence 34444588899988888888765 556788889999999 99999999877754431 55667788888888899999
Q ss_pred hHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHH----HHHHHHHcCCCHHHHHHH
Q 046312 111 REAVWVFIDMKRRGIKPTEFTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNN----NLVRFYGSCRRKRDACKV 186 (514)
Q Consensus 111 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~----~li~~~~~~~~~~~A~~~ 186 (514)
++|.-+|.+..+.. +++...+---+..|-+.|+...|...|.++.....+.|..-+. ..+..+...++-+.|.+.
T Consensus 224 ~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~ 302 (895)
T KOG2076|consen 224 NQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKA 302 (895)
T ss_pred HHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 99999999998863 4455555555677888999999999999998875322322222 334556677777888888
Q ss_pred hhccCC-----CChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC---------------------------CHHHHH
Q 046312 187 FDDMCE-----RSVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEP---------------------------DETTML 234 (514)
Q Consensus 187 ~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p---------------------------~~~t~~ 234 (514)
++.... -+...++.++..+.+...++.|......+......+ +... .
T Consensus 303 le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~ 381 (895)
T KOG2076|consen 303 LEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-I 381 (895)
T ss_pred HHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-H
Confidence 877743 245578899999999999999999888887622122 2222 1
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHhC--CCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCc----CCHHHHHHHHHHHHH
Q 046312 235 VVLSACTELGNLSLGKWVHLQLIERG--TVLNCQLGTALIDMYAKCGAVGCARLLFSRMEE----INVWTWSAMILGLAQ 308 (514)
Q Consensus 235 ~ll~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~ 308 (514)
.++-++.+.+..+....+.....+.. +.-+...|.-+.++|...|++.+|+.+|..+.. .+...|-.+..+|..
T Consensus 382 rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~ 461 (895)
T KOG2076|consen 382 RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYME 461 (895)
T ss_pred hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHH
Confidence 33445556666677777777777776 444577888999999999999999999999885 457789999999999
Q ss_pred cCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHH-------HhhCCCCchHHHHHHHHHHHhc
Q 046312 309 HGYAEEALELFSNMKNSSISPN-YVTFLGVLCACNHAGMVEDGYRYFHEME-------HVHGIKPMRIHYHTMADILARA 380 (514)
Q Consensus 309 ~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~-------~~~~~~p~~~~~~~li~~~~~~ 380 (514)
.|.+++|.+.|+..+.. .|+ ...--.|...+.+.|+.++|.+.+..+. +..+..|+..........+.+.
T Consensus 462 l~e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~ 539 (895)
T KOG2076|consen 462 LGEYEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQV 539 (895)
T ss_pred HhhHHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHh
Confidence 99999999999999874 444 3444556677889999999999998843 1124556666666667778888
Q ss_pred CCHHHHHHHHHhCC--------CCC-----------------CHHHHHHHHHHHHhcCCCCcchHHHHHHHHH-----Hh
Q 046312 381 GHLKEAYTFIMNMP--------FQP-----------------NPIVLRALLSASSIHDAKYQDGVGNEVRRRL-----LE 430 (514)
Q Consensus 381 g~~~~A~~~~~~~~--------~~p-----------------~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~-----~~ 430 (514)
|+.++=..+...|. +-| .......++.+-.+.++ ....+..+..- .+
T Consensus 540 gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~---~~~~~~~l~d~~~~~~~e 616 (895)
T KOG2076|consen 540 GKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATD---DNVMEKALSDGTEFRAVE 616 (895)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCc---hHHhhhcccchhhhhhhh
Confidence 88876444433331 111 11222223333333333 11111111111 11
Q ss_pred cC---CCC-CchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCc-----eeEEEECCeEEEEEecccCCcChHHHHHH
Q 046312 431 LE---PRG-SQNLVIVANKYAEVGMWEKVSNVRRFMKNVGLKKMKG-----MSWVELGGSIHRFYSGYDSQVELAGIYQI 501 (514)
Q Consensus 431 ~~---p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 501 (514)
.. -++ ...+..++..+.+.|++++|..+...+.+..+-..+. .-| ..+.+....++...|++.
T Consensus 617 ~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~--------~~l~~s~~~~d~~~a~~~ 688 (895)
T KOG2076|consen 617 LRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQF--------LGLKASLYARDPGDAFSY 688 (895)
T ss_pred hccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHH--------HHHHHHHhcCCHHHHHHH
Confidence 11 111 1345588889999999999999999988765422111 112 233456677888999999
Q ss_pred HHHHHHH
Q 046312 502 LETLNLH 508 (514)
Q Consensus 502 ~~~m~~~ 508 (514)
+..|..+
T Consensus 689 lR~~i~~ 695 (895)
T KOG2076|consen 689 LRSVITQ 695 (895)
T ss_pred HHHHHHH
Confidence 9888776
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.1e-11 Score=111.78 Aligned_cols=214 Identities=17% Similarity=0.151 Sum_probs=172.7
Q ss_pred hccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCc---CCHHHHHHHHHHHHHcCChHHHHH
Q 046312 241 TELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEE---INVWTWSAMILGLAQHGYAEEALE 317 (514)
Q Consensus 241 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~ 317 (514)
.-.|+.-.+..-|+..++....++. .|--+..+|....+.++....|.+..+ .|+.+|..-.+.+.-.+++++|..
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~a 415 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIA 415 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHH
Confidence 3467888888889998887755443 266677789999999999999999876 356677777777888889999999
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC-C
Q 046312 318 LFSNMKNSSISPN-YVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP-F 395 (514)
Q Consensus 318 ~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~ 395 (514)
=|++.+. +.|+ ...|-.+..+..+.+.++++...|++.+++ ++-.+..|+.....+...++++.|.+.|+... .
T Consensus 416 DF~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 416 DFQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 9999987 4554 566777777788899999999999999985 45568889999999999999999999998874 3
Q ss_pred CCC---------HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 046312 396 QPN---------PIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMK 463 (514)
Q Consensus 396 ~p~---------~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 463 (514)
.|+ ..+-..++.. .-.++ +..|.+++.++.+++|.-..+|..|+..-.+.|+.++|+++|++-.
T Consensus 492 E~~~~~~~v~~~plV~Ka~l~~-qwk~d---~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 492 EPREHLIIVNAAPLVHKALLVL-QWKED---INQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred ccccccccccchhhhhhhHhhh-chhhh---HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 443 2222222222 22366 9999999999999999988899999999999999999999999754
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.51 E-value=9e-11 Score=107.09 Aligned_cols=341 Identities=11% Similarity=0.049 Sum_probs=229.3
Q ss_pred CCCChHHHHHHHcccCCCCCcccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcch--HHHHHHHHhccCCchHHHHH
Q 046312 74 SSKNLTYARSILCNYVNDSVPIPWNNLIRGYAWSDRPREAVWVFIDMKRRGIKPTEFT--YPFVLKACAEISGLNEGMQV 151 (514)
Q Consensus 74 ~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~--~~~ll~~~~~~g~~~~a~~~ 151 (514)
+.|....|...|.+.. ..-|..|.+.+....-..+.+.+..+- .|.+.|..- =-.+..++-...+.+++.+-
T Consensus 176 ~~~~~s~A~~sfv~~v-~~~P~~W~AWleL~~lit~~e~~~~l~-----~~l~~~~h~M~~~F~~~a~~el~q~~e~~~k 249 (559)
T KOG1155|consen 176 ELGLLSLAIDSFVEVV-NRYPWFWSAWLELSELITDIEILSILV-----VGLPSDMHWMKKFFLKKAYQELHQHEEALQK 249 (559)
T ss_pred hhchHHHHHHHHHHHH-hcCCcchHHHHHHHHhhchHHHHHHHH-----hcCcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777777777665 444444554444332222222222111 112212111 11234456666788888888
Q ss_pred HHHHHHhCCCCCcchHHHHHHHHHcCCCHHHHHHHhhccCCC------ChhhHHHHHHHHHhCCChhHHHHHHHHHHHCC
Q 046312 152 QANVTKSGLDSDVYTNNNLVRFYGSCRRKRDACKVFDDMCER------SVVSWNVIITVCVENLWLGEAVGYFVKMKDLG 225 (514)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 225 (514)
.+.+...|++-+...-+....+.....|+++|+.+|+++.+. |..+|..++- ++..+..- .++.+-.-.-
T Consensus 250 ~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LY--v~~~~skL--s~LA~~v~~i 325 (559)
T KOG1155|consen 250 KERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLY--VKNDKSKL--SYLAQNVSNI 325 (559)
T ss_pred HHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHH--HHhhhHHH--HHHHHHHHHh
Confidence 888888887777766666777778889999999999999543 5567766653 33332221 2222211111
Q ss_pred CCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCc---CCHHHHHHH
Q 046312 226 FEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEE---INVWTWSAM 302 (514)
Q Consensus 226 ~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l 302 (514)
-+--..|+..+.+.|+-.++.+.|..+|+..++.+.. ....++.+.+-|....+...|.+-++...+ .|-..|-.|
T Consensus 326 dKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGL 404 (559)
T KOG1155|consen 326 DKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGL 404 (559)
T ss_pred ccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhh
Confidence 1334467788888888888999999999998887633 567888888899999999999999988876 355778888
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcC
Q 046312 303 ILGLAQHGYAEEALELFSNMKNSSISP-NYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAG 381 (514)
Q Consensus 303 i~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 381 (514)
.++|.-.+...-|+-+|++.... +| |...|.+|..+|.+.++.++|...|..... .-..+...+..|.+.|-+.+
T Consensus 405 GQaYeim~Mh~YaLyYfqkA~~~--kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~--~~dte~~~l~~LakLye~l~ 480 (559)
T KOG1155|consen 405 GQAYEIMKMHFYALYYFQKALEL--KPNDSRLWVALGECYEKLNRLEEAIKCYKRAIL--LGDTEGSALVRLAKLYEELK 480 (559)
T ss_pred hHHHHHhcchHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHh--ccccchHHHHHHHHHHHHHH
Confidence 89999888888899999988874 45 567788888999999999999999988886 33446677888899999999
Q ss_pred CHHHHHHHHHhCC--------CCCC-HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcC
Q 046312 382 HLKEAYTFIMNMP--------FQPN-PIVLRALLSASSIHDAKYQDGVGNEVRRRLLELE 432 (514)
Q Consensus 382 ~~~~A~~~~~~~~--------~~p~-~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~ 432 (514)
+..+|...|++-. ..|. ....--|..-+.+.++ +++|.........-+
T Consensus 481 d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~---~~~As~Ya~~~~~~~ 537 (559)
T KOG1155|consen 481 DLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKD---FDEASYYATLVLKGE 537 (559)
T ss_pred hHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcc---hHHHHHHHHHHhcCC
Confidence 9999888776652 2221 2222224455667777 777777666555443
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.7e-11 Score=104.04 Aligned_cols=267 Identities=12% Similarity=0.113 Sum_probs=125.3
Q ss_pred CCchHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhC-CCCC--cchHHHHHHHHHcCCCHHHHH
Q 046312 108 DRPREAVWVFIDMKRRGIKPTEFTYPFVLKACAEISGLNEGMQVQANVTKSG-LDSD--VYTNNNLVRFYGSCRRKRDAC 184 (514)
Q Consensus 108 g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~--~~~~~~li~~~~~~~~~~~A~ 184 (514)
.++++|+++|-+|.+.. +-+..+-.+|-+.|.+.|..+.|+.+.+.+.++. ++-+ ......|..-|...|-+|.|+
T Consensus 49 ~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 49 NQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred cCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 45666666666665531 2222344455556666666666666666665431 0000 112233444455555566666
Q ss_pred HHhhccCCCC---hhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCC
Q 046312 185 KVFDDMCERS---VVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGT 261 (514)
Q Consensus 185 ~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 261 (514)
.+|..+.+.+ ..+...|+..|....+|++|+++-+++.+.+..+...- +
T Consensus 128 ~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~e---I------------------------- 179 (389)
T COG2956 128 DIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVE---I------------------------- 179 (389)
T ss_pred HHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhH---H-------------------------
Confidence 6655554322 22444455555555555555555555555433322110 0
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCcCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 046312 262 VLNCQLGTALIDMYAKCGAVGCARLLFSRMEEIN---VWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVL 338 (514)
Q Consensus 262 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll 338 (514)
...|--|...+....++++|..++.+..+.| +..--.+...+...|+++.|.+.++...+.+..--..+...|.
T Consensus 180 ---AqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~ 256 (389)
T COG2956 180 ---AQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLY 256 (389)
T ss_pred ---HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence 1112223333333444555555555444321 2222233344555666666666666665544333344455555
Q ss_pred HHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHH-HHhCCCCCCHHHHHHHHHHH
Q 046312 339 CACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTF-IMNMPFQPNPIVLRALLSAS 409 (514)
Q Consensus 339 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~-~~~~~~~p~~~~~~~l~~~~ 409 (514)
.+|...|+.++...++..+.+. .++...-..+.+.-....-.+.|... .+++..+|+...+..|+..-
T Consensus 257 ~~Y~~lg~~~~~~~fL~~~~~~---~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~ 325 (389)
T COG2956 257 ECYAQLGKPAEGLNFLRRAMET---NTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYH 325 (389)
T ss_pred HHHHHhCCHHHHHHHHHHHHHc---cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhh
Confidence 6666666666666666655543 22222222222222222223333333 33344556666655555443
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.50 E-value=5.1e-11 Score=103.82 Aligned_cols=222 Identities=10% Similarity=0.082 Sum_probs=146.8
Q ss_pred HHHHHHHHhcccCCCCChHHHHHHHcccCCCCCcccHH---HHHHHHHhCCCchHHHHHHHHHHHcCCCCCcc------h
Q 046312 61 QILKELVRFCTLSSSKNLTYARSILCNYVNDSVPIPWN---NLIRGYAWSDRPREAVWVFIDMKRRGIKPTEF------T 131 (514)
Q Consensus 61 ~~~~~ll~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~------~ 131 (514)
..|-.=++++. +.+.+.|..+|-+|. .-|+.+|. +|-..|.+.|..+.|+++-..+.++ ||.. .
T Consensus 37 r~Yv~GlNfLL---s~Q~dKAvdlF~e~l-~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lA 109 (389)
T COG2956 37 RDYVKGLNFLL---SNQPDKAVDLFLEML-QEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLA 109 (389)
T ss_pred HHHHhHHHHHh---hcCcchHHHHHHHHH-hcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHH
Confidence 34445555555 688899999999998 67776655 5778899999999999999988764 3332 3
Q ss_pred HHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCHHHHHHHhhccCCCChhhHH--------HHHH
Q 046312 132 YPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKRDACKVFDDMCERSVVSWN--------VIIT 203 (514)
Q Consensus 132 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~--------~li~ 203 (514)
.-.|.+-|...|-+|.|+.+|..+.+.| ..-......|+..|-...++++|.+.-+++.+.+...|+ -+..
T Consensus 110 l~qL~~Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq 188 (389)
T COG2956 110 LQQLGRDYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQ 188 (389)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHH
Confidence 3445667888999999999999998765 334567788999999999999999999888554444333 3444
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHH
Q 046312 204 VCVENLWLGEAVGYFVKMKDLGFEPDE-TTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVG 282 (514)
Q Consensus 204 ~~~~~~~~~~a~~~~~~m~~~~~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 282 (514)
.+....+.+.|...+++..+.+ |+. ..-..+-+.....|+++.|.+.++.+.+.+...-..+...|..+|.+.|+.+
T Consensus 189 ~~~~~~~~d~A~~~l~kAlqa~--~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~ 266 (389)
T COG2956 189 QALASSDVDRARELLKKALQAD--KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPA 266 (389)
T ss_pred HHhhhhhHHHHHHHHHHHHhhC--ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHH
Confidence 4445567777777777766653 222 1222333444555555555555555555554444444444444444444444
Q ss_pred HHHHHHHhcC
Q 046312 283 CARLLFSRME 292 (514)
Q Consensus 283 ~A~~~~~~~~ 292 (514)
+....+..+.
T Consensus 267 ~~~~fL~~~~ 276 (389)
T COG2956 267 EGLNFLRRAM 276 (389)
T ss_pred HHHHHHHHHH
Confidence 4444444433
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.2e-09 Score=100.22 Aligned_cols=451 Identities=10% Similarity=0.037 Sum_probs=327.1
Q ss_pred hhHHHHHHHHHHHhCCCCChHHHHHHHHhcccCCCCChHHHHHHHcccCC-CCCc-ccHHHHHHHHHhCCCchHHHHHHH
Q 046312 41 KKHLYQIHAQIQVSGLQNDAQILKELVRFCTLSSSKNLTYARSILCNYVN-DSVP-IPWNNLIRGYAWSDRPREAVWVFI 118 (514)
Q Consensus 41 ~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~g~~~~A~~~~~~~~~-~~~~-~~~~~li~~~~~~g~~~~a~~~~~ 118 (514)
..+++++|+..+.-. ..+...|-..+.+=. ++..+..|+.+|++... -|.+ ..|-..+..--..|++..|.++|+
T Consensus 89 ~~RARSv~ERALdvd-~r~itLWlkYae~Em--knk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqife 165 (677)
T KOG1915|consen 89 IQRARSVFERALDVD-YRNITLWLKYAEFEM--KNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFE 165 (677)
T ss_pred HHHHHHHHHHHHhcc-cccchHHHHHHHHHH--hhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 466678888777655 567788888888877 99999999999998752 2222 345555555556799999999999
Q ss_pred HHHHcCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCHHHHHHHhhccCC------
Q 046312 119 DMKRRGIKPTEFTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKRDACKVFDDMCE------ 192 (514)
Q Consensus 119 ~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~------ 192 (514)
+..+ ..|+...|.+.++.=.+...++.|..+++..+-. .|+..+|-.....-.++|.+..|..+|+...+
T Consensus 166 rW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~ 241 (677)
T KOG1915|consen 166 RWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDE 241 (677)
T ss_pred HHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHH
Confidence 9877 5899999999999999999999999999998755 58999999888888999999999999988733
Q ss_pred CChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCChHHHHHH--------HHHHHHhCCC
Q 046312 193 RSVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPD--ETTMLVVLSACTELGNLSLGKWV--------HLQLIERGTV 262 (514)
Q Consensus 193 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~t~~~ll~~~~~~g~~~~a~~~--------~~~~~~~~~~ 262 (514)
.+...+++....-.++..++.|.-+|+-..+. ++-+ ...|......=-+-|+......+ ++.+++.+ +
T Consensus 242 ~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p 319 (677)
T KOG1915|consen 242 EAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-P 319 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-C
Confidence 13345666666556678889999999888876 2323 33444444444455665444332 23344443 3
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcCc--CCH---HHHHHH--------HHHHHHcCChHHHHHHHHHHHHCCCCC
Q 046312 263 LNCQLGTALIDMYAKCGAVGCARLLFSRMEE--INV---WTWSAM--------ILGLAQHGYAEEALELFSNMKNSSISP 329 (514)
Q Consensus 263 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~---~~~~~l--------i~~~~~~~~~~~a~~~~~~m~~~g~~p 329 (514)
.|-.++--.++.-...|+.+...++|++... |.. ..|..- +-.-....+++.+.++|+..++. ++-
T Consensus 320 ~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPH 398 (677)
T KOG1915|consen 320 YNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPH 398 (677)
T ss_pred CCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCc
Confidence 4667777788888889999999999998874 211 122221 12224578999999999999883 444
Q ss_pred CHHHHHHHH----HHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHH
Q 046312 330 NYVTFLGVL----CACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP-FQP-NPIVLR 403 (514)
Q Consensus 330 ~~~~~~~ll----~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~ 403 (514)
...||..+= ..-.++.++..|.+++.... |..|...+|...|..=.+.+.+|.+..++++.. ..| |..+|.
T Consensus 399 kkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI---G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~ 475 (677)
T KOG1915|consen 399 KKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI---GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWS 475 (677)
T ss_pred ccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh---ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHH
Confidence 456665443 33456789999999999987 889999999999999999999999999999986 555 678888
Q ss_pred HHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCC--chHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCceeEEEECCe
Q 046312 404 ALLSASSIHDAKYQDGVGNEVRRRLLELEPRGS--QNLVIVANKYAEVGMWEKVSNVRRFMKNVGLKKMKGMSWVELGGS 481 (514)
Q Consensus 404 ~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~ 481 (514)
.....-...|+ .+.+..++..+......+. ..+-..++--...|.++.|..+++++.++.--. ..||....
T Consensus 476 kyaElE~~Lgd---tdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~---kvWisFA~- 548 (677)
T KOG1915|consen 476 KYAELETSLGD---TDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHV---KVWISFAK- 548 (677)
T ss_pred HHHHHHHHhhh---HHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccc---hHHHhHHH-
Confidence 88888888999 9999999999987553322 245577777789999999999999998754311 13531000
Q ss_pred EEEEEecccCCc-----------ChHHHHHHHHHHHHHhhhc
Q 046312 482 IHRFYSGYDSQV-----------ELAGIYQILETLNLHMKVL 512 (514)
Q Consensus 482 ~~~~~~~~~~~~-----------~~~~a~~~~~~m~~~~~~~ 512 (514)
...-.+....+ ....|-.+|++-...+++.
T Consensus 549 -fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~ 589 (677)
T KOG1915|consen 549 -FEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKES 589 (677)
T ss_pred -HhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhc
Confidence 00001111222 4667778888877776654
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.47 E-value=7.3e-11 Score=106.02 Aligned_cols=276 Identities=13% Similarity=0.102 Sum_probs=128.5
Q ss_pred CCCHHHHHHHhhccCC---CChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHH
Q 046312 177 CRRKRDACKVFDDMCE---RSVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVH 253 (514)
Q Consensus 177 ~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 253 (514)
.|++.+|+++..+-.+ .....|..-+.+-.+.|+.+.+-.++.+..+.-..++...+.+........|+.+.|..-+
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 4555555555544411 2233444444555555555555555555554422334444444445555555555555555
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCcC----C-------HHHHHHHHHHHHHcCChHHHHHHHHHH
Q 046312 254 LQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEEI----N-------VWTWSAMILGLAQHGYAEEALELFSNM 322 (514)
Q Consensus 254 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~-------~~~~~~li~~~~~~~~~~~a~~~~~~m 322 (514)
+++.+.+.. ++.+......+|.+.|++.....++.++.+. + ..+|+.+++-....+..+.-...|+..
T Consensus 177 ~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 555555422 3444455555555555555555555555431 1 124444444444444444433444443
Q ss_pred HHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHH
Q 046312 323 KNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP--FQPNPI 400 (514)
Q Consensus 323 ~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~ 400 (514)
-.+ .+-++..-..++.-+.+.|+.++|.++..+..++ +..|+.. .+ -...+-++.+.-.+..++-. ..-++.
T Consensus 256 pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D~~L~---~~-~~~l~~~d~~~l~k~~e~~l~~h~~~p~ 329 (400)
T COG3071 256 PRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QWDPRLC---RL-IPRLRPGDPEPLIKAAEKWLKQHPEDPL 329 (400)
T ss_pred cHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccChhHH---HH-HhhcCCCCchHHHHHHHHHHHhCCCChh
Confidence 322 2333333344444455555555555555555543 3333311 11 11223333333333322221 111224
Q ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 046312 401 VLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMK 463 (514)
Q Consensus 401 ~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 463 (514)
.+.+|...|.+++. +.+|..+++.+....|+ ...|..++.++.+.|+..+|.++.++..
T Consensus 330 L~~tLG~L~~k~~~---w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 330 LLSTLGRLALKNKL---WGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHHHHHHHHhhH---HHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 44455555555555 55555555555555554 2345555555555555555555555444
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.6e-11 Score=117.05 Aligned_cols=276 Identities=13% Similarity=0.087 Sum_probs=212.3
Q ss_pred CHHHHHHHhhccCC--CCh-hhHHHHHHHHHhCCChhHHHHHHHHHHHCC--CCCCHHHHHHHHHHHhccCChHHHHH-H
Q 046312 179 RKRDACKVFDDMCE--RSV-VSWNVIITVCVENLWLGEAVGYFVKMKDLG--FEPDETTMLVVLSACTELGNLSLGKW-V 252 (514)
Q Consensus 179 ~~~~A~~~~~~~~~--~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~p~~~t~~~ll~~~~~~g~~~~a~~-~ 252 (514)
+..+|...|.+++. +|+ .....+..+|...+++++|.++|+...+.. ..-+..+|.+.+..+-+ +-+.. +
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHH
Confidence 45778888888633 333 344566789999999999999999998752 22356788887765432 11222 2
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCcC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 046312 253 HLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEEI---NVWTWSAMILGLAQHGYAEEALELFSNMKNSSISP 329 (514)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 329 (514)
-+.+.+.. +..+.+|-++.++|.-.++.+.|++.|++..+. ...+|+.+..-+.....+|.|...|+..+. +.|
T Consensus 410 aq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~ 486 (638)
T KOG1126|consen 410 AQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDP 486 (638)
T ss_pred HHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCc
Confidence 23333333 446889999999999999999999999999874 457788888888899999999999998874 333
Q ss_pred C-HHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCc-hHHHHHHHHHHHhcCCHHHHHHHHHhCC-CC-CCHHHHHHH
Q 046312 330 N-YVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPM-RIHYHTMADILARAGHLKEAYTFIMNMP-FQ-PNPIVLRAL 405 (514)
Q Consensus 330 ~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~-p~~~~~~~l 405 (514)
. ...|-.+...|.+.++++.|+-.|+++.+ +.|. .+....+...+.+.|+.|+|+.+++++. .. -|+..----
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~---INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE---INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR 563 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhc---CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence 3 34566677789999999999999999984 4665 5566677888999999999999999985 23 344444444
Q ss_pred HHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 046312 406 LSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNVGL 467 (514)
Q Consensus 406 ~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 467 (514)
...+...++ +++|...++++.++-|++..+|..++..|.+.|+.+.|..-|--+.+...
T Consensus 564 ~~il~~~~~---~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldp 622 (638)
T KOG1126|consen 564 ASILFSLGR---YVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDP 622 (638)
T ss_pred HHHHHhhcc---hHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCC
Confidence 555667788 99999999999999999999999999999999999999998887766544
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.47 E-value=6.6e-11 Score=107.56 Aligned_cols=363 Identities=12% Similarity=0.072 Sum_probs=223.4
Q ss_pred cHHHH---HHHHHhCCCchHHHHHHHHHHHcCCCCCcchHH-HHHHHHhccCCchHHHHHHHHHHHhCCCCCc------c
Q 046312 96 PWNNL---IRGYAWSDRPREAVWVFIDMKRRGIKPTEFTYP-FVLKACAEISGLNEGMQVQANVTKSGLDSDV------Y 165 (514)
Q Consensus 96 ~~~~l---i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~-~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~ 165 (514)
+|+.| ..-|..+.-+.+|+..|+-+.+...-|+..... .+-+.+.+.+.+.+|+++++..... .|++ .
T Consensus 200 tfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldq--vpsink~~rik 277 (840)
T KOG2003|consen 200 TFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQ--VPSINKDMRIK 277 (840)
T ss_pred hHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhh--ccccchhhHHH
Confidence 45444 344555666788999999888877777776432 3456678889999999999988776 3332 2
Q ss_pred hHHHHHHHHHcCCCHHHHHHHhhccC--CCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC------------CHH
Q 046312 166 TNNNLVRFYGSCRRKRDACKVFDDMC--ERSVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEP------------DET 231 (514)
Q Consensus 166 ~~~~li~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p------------~~~ 231 (514)
+.+.+.-.+.+.|+++.|..-|+... .|+..+--.|+-++..-|+.++..+.|.+|+.....| +..
T Consensus 278 il~nigvtfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ 357 (840)
T KOG2003|consen 278 ILNNIGVTFIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDN 357 (840)
T ss_pred HHhhcCeeEEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchH
Confidence 34445556788999999999999984 4665554445555556788888888898886643222 221
Q ss_pred HHHHHHH---------------------------------------------------------------HHhccCChHH
Q 046312 232 TMLVVLS---------------------------------------------------------------ACTELGNLSL 248 (514)
Q Consensus 232 t~~~ll~---------------------------------------------------------------~~~~~g~~~~ 248 (514)
..+..+. .+.+.|+++.
T Consensus 358 ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~ 437 (840)
T KOG2003|consen 358 LLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEG 437 (840)
T ss_pred HHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHH
Confidence 1111111 1334455555
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHH------------------------------------HHHHhcCCHHHHHHHHHhcC
Q 046312 249 GKWVHLQLIERGTVLNCQLGTALI------------------------------------DMYAKCGAVGCARLLFSRME 292 (514)
Q Consensus 249 a~~~~~~~~~~~~~~~~~~~~~li------------------------------------~~~~~~g~~~~A~~~~~~~~ 292 (514)
|.++++-..+..-..-...-+.|- +.-...|++++|.+.|++..
T Consensus 438 aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal 517 (840)
T KOG2003|consen 438 AIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEAL 517 (840)
T ss_pred HHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHH
Confidence 555555444332111111111000 00012455556666665555
Q ss_pred cCCHHHHHHHHH---HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHH
Q 046312 293 EINVWTWSAMIL---GLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIH 369 (514)
Q Consensus 293 ~~~~~~~~~li~---~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~ 369 (514)
..|..+-.+|.. .+-..|+.++|++.|-++..- +.-+......+...|....+..+|.+++.+... -++.|+..
T Consensus 518 ~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~s--lip~dp~i 594 (840)
T KOG2003|consen 518 NNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANS--LIPNDPAI 594 (840)
T ss_pred cCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--cCCCCHHH
Confidence 544443333322 244556666666666555432 223444555566666666677777777666653 34445667
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHH-HHHHHH
Q 046312 370 YHTMADILARAGHLKEAYTFIMNM-P-FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLV-IVANKY 446 (514)
Q Consensus 370 ~~~li~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~-~l~~~~ 446 (514)
...|.+.|-+.|+-..|.+..-+- . ++-+..+..-|..-|....- .+++...++++.-+.|+.. -|. .++.++
T Consensus 595 lskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf---~ekai~y~ekaaliqp~~~-kwqlmiasc~ 670 (840)
T KOG2003|consen 595 LSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQF---SEKAINYFEKAALIQPNQS-KWQLMIASCF 670 (840)
T ss_pred HHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHH---HHHHHHHHHHHHhcCccHH-HHHHHHHHHH
Confidence 777777777777777777665333 3 44566666666666666555 7888999999988999855 455 556667
Q ss_pred HhcCCHHHHHHHHHHHHhCCC
Q 046312 447 AEVGMWEKVSNVRRFMKNVGL 467 (514)
Q Consensus 447 ~~~g~~~~A~~~~~~m~~~~~ 467 (514)
.+.|++++|.++++...++-.
T Consensus 671 rrsgnyqka~d~yk~~hrkfp 691 (840)
T KOG2003|consen 671 RRSGNYQKAFDLYKDIHRKFP 691 (840)
T ss_pred HhcccHHHHHHHHHHHHHhCc
Confidence 789999999999999987643
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.2e-11 Score=116.19 Aligned_cols=279 Identities=13% Similarity=0.069 Sum_probs=218.0
Q ss_pred CchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCHHHHHHHhhccCC------CChhhHHHHHHHHHhCCChhHHHHH
Q 046312 144 GLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKRDACKVFDDMCE------RSVVSWNVIITVCVENLWLGEAVGY 217 (514)
Q Consensus 144 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~a~~~ 217 (514)
+..+|...|+.+.+. +.-+..+...+..+|...+++++|+++|+.+.. .+...|.+.+-.+.+ +-++..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 557788888885444 233346667788999999999999999999832 367788877654432 222222
Q ss_pred H-HHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCcCCH
Q 046312 218 F-VKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEEINV 296 (514)
Q Consensus 218 ~-~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 296 (514)
+ +.+.+. -+-.+.+|..+-++|.-+++.+.|.+.|+..++.+. -...+|+.+.+-+.....+|+|...|+.....|+
T Consensus 409 Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp-~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~ 486 (638)
T KOG1126|consen 409 LAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDP-RFAYAYTLLGHESIATEEFDKAMKSFRKALGVDP 486 (638)
T ss_pred HHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCC-ccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCc
Confidence 2 233333 255678999999999999999999999999988652 2688999999999999999999999999999888
Q ss_pred HHHHH---HHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCc-hHHHH
Q 046312 297 WTWSA---MILGLAQHGYAEEALELFSNMKNSSISPN-YVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPM-RIHYH 371 (514)
Q Consensus 297 ~~~~~---li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~ 371 (514)
..|++ +.-.|.+.++++.|+-.|++..+- .|. .+....+...+.+.|+.++|+++++++... .|. +..--
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~I--NP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~l---d~kn~l~~~ 561 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEI--NPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHL---DPKNPLCKY 561 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhcC--CccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhc---CCCCchhHH
Confidence 77666 456799999999999999999874 454 555666777888999999999999999853 443 33333
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCc
Q 046312 372 TMADILARAGHLKEAYTFIMNMP-FQPN-PIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQ 437 (514)
Q Consensus 372 ~li~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 437 (514)
.-+..+...++.++|+..|++++ ..|+ ...+..+...|.+.|+ .+.|..-+..+.+++|....
T Consensus 562 ~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~---~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 562 HRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGN---TDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHcc---chHHHHhhHHHhcCCCccch
Confidence 34556778899999999999997 5554 5778888899999999 99999999999999998654
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.44 E-value=9.7e-10 Score=98.94 Aligned_cols=287 Identities=14% Similarity=0.098 Sum_probs=176.6
Q ss_pred CCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCHHHHHHH
Q 046312 107 SDRPREAVWVFIDMKRRGIKPTEFTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKRDACKV 186 (514)
Q Consensus 107 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~ 186 (514)
.|+|.+|.++..+-.+.+-.| ...|..-..+.-..|+.+.+-.++.++.+..-.++....-+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 356666666665554443221 1234444445555566666666666555542233444444555555555555555554
Q ss_pred hhcc---CCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCC
Q 046312 187 FDDM---CERSVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVL 263 (514)
Q Consensus 187 ~~~~---~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 263 (514)
.+++ .+.++.......++|.+.|+|..+..++.+|.+.|+--|...-. .
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~----------------------------l 227 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAAR----------------------------L 227 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHH----------------------------H
Confidence 4443 33345555555555666666666666665555555433322100 0
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCc---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 046312 264 NCQLGTALIDMYAKCGAVGCARLLFSRMEE---INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCA 340 (514)
Q Consensus 264 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 340 (514)
...+++.+++-....+..+.-...++.... .++..-.+++.-+.+.|+.++|.++.++..+.+..|+..+ .-.
T Consensus 228 e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~----~~~ 303 (400)
T COG3071 228 EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCR----LIP 303 (400)
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHH----HHh
Confidence 122444455544444555555556666653 4566777778888888888888888888888776666222 224
Q ss_pred HhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCCCcch
Q 046312 341 CNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP-FQPNPIVLRALLSASSIHDAKYQDG 419 (514)
Q Consensus 341 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~~~ 419 (514)
+.+-++.+.-.+..++..+.++-.| ..+.+|...|.+.+.|.+|.+.|+... ..|+..+|+.+..++...|+ ..
T Consensus 304 ~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~---~~ 378 (400)
T COG3071 304 RLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGE---PE 378 (400)
T ss_pred hcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCC---hH
Confidence 5567777777777777776544444 667788888888888999988888764 78888888888888888888 88
Q ss_pred HHHHHHHHHHhc
Q 046312 420 VGNEVRRRLLEL 431 (514)
Q Consensus 420 ~a~~~~~~~~~~ 431 (514)
.|.+..+....+
T Consensus 379 ~A~~~r~e~L~~ 390 (400)
T COG3071 379 EAEQVRREALLL 390 (400)
T ss_pred HHHHHHHHHHHH
Confidence 888888877643
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.44 E-value=7.1e-10 Score=108.93 Aligned_cols=395 Identities=13% Similarity=0.064 Sum_probs=227.1
Q ss_pred HHHHHHHHhCCCCChHHHHHHHHhcccCCCCChHHHHHHHcccCCCCCc----ccHHHHHHHHHhCCCchHHHHHHHHHH
Q 046312 46 QIHAQIQVSGLQNDAQILKELVRFCTLSSSKNLTYARSILCNYVNDSVP----IPWNNLIRGYAWSDRPREAVWVFIDMK 121 (514)
Q Consensus 46 ~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~ 121 (514)
.++..+...|+.|+..+|..+|.-|+ ..|+.+.|- +|.-|. .++. ..|+.++.++.+.++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc--~~gdieaat-if~fm~-~ksLpv~e~vf~~lv~sh~~And~Enpk------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYC--TKGDIEAAT-IFPFME-IKSLPVREGVFRGLVASHKEANDAENPK------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHc--ccCCCcccc-chhhhh-cccccccchhHHHHHhcccccccccCCC-------
Confidence 46677788888898889999998888 888888887 777664 2222 34555665555555554443
Q ss_pred HcCCCCCcchHHHHHHHHhccCCchHHHHHHHHHH-------HhC-----------------CCCCcchHHHHHHHHHcC
Q 046312 122 RRGIKPTEFTYPFVLKACAEISGLNEGMQVQANVT-------KSG-----------------LDSDVYTNNNLVRFYGSC 177 (514)
Q Consensus 122 ~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-------~~~-----------------~~~~~~~~~~li~~~~~~ 177 (514)
.|...||..|..+|...||+..-..+=+.|. ..| .-||.. ..+....-.
T Consensus 80 ----ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~illlv~e 152 (1088)
T KOG4318|consen 80 ----EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAILLLVLE 152 (1088)
T ss_pred ----CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHHHHHHH
Confidence 4555566666666666665543111111111 111 111111 111111222
Q ss_pred CCHHHHHHHh---------------------------------hccC-CCChhhHHHHHHHHHhCCChhHHHHHHHHHHH
Q 046312 178 RRKRDACKVF---------------------------------DDMC-ERSVVSWNVIITVCVENLWLGEAVGYFVKMKD 223 (514)
Q Consensus 178 ~~~~~A~~~~---------------------------------~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 223 (514)
|-++.+.+++ .... .+++.+|.+++.+-.-.|+.+.|..++.+|++
T Consensus 153 glwaqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke 232 (1088)
T KOG4318|consen 153 GLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKE 232 (1088)
T ss_pred HHHHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 2222222222 2222 25788899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH------------------
Q 046312 224 LGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCAR------------------ 285 (514)
Q Consensus 224 ~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~------------------ 285 (514)
.|++.+.+-|-.++-+ .++...+..++.-|.+.|+.|+..|+.-.+..+..+|....+.
T Consensus 233 ~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~ 309 (1088)
T KOG4318|consen 233 KGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAAC 309 (1088)
T ss_pred cCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHh
Confidence 9999999888888766 7888889999999999999999998877766655544322111
Q ss_pred ------HHHHhc---------Cc-------CCHHHHHHHHHHHHHcCCh--------------------------HHHHH
Q 046312 286 ------LLFSRM---------EE-------INVWTWSAMILGLAQHGYA--------------------------EEALE 317 (514)
Q Consensus 286 ------~~~~~~---------~~-------~~~~~~~~li~~~~~~~~~--------------------------~~a~~ 317 (514)
+.++.- ++ .....|...+.... .|+- ..+.+
T Consensus 310 rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l~h-Qgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrq 388 (1088)
T KOG4318|consen 310 RGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKLRH-QGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQ 388 (1088)
T ss_pred cccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHHHH-cCCCchHHHHHhhhcCCccccCcchHHHHHHHHHH
Confidence 001000 00 00112221111111 1100 11222
Q ss_pred HHHHHHHCC-----------------------------CCCCHH----------------------------HHHHHHHH
Q 046312 318 LFSNMKNSS-----------------------------ISPNYV----------------------------TFLGVLCA 340 (514)
Q Consensus 318 ~~~~m~~~g-----------------------------~~p~~~----------------------------~~~~ll~~ 340 (514)
+|++....- ..||.. .-+.++..
T Consensus 389 yFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~ 468 (1088)
T KOG4318|consen 389 YFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLT 468 (1088)
T ss_pred HHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHH
Confidence 232222110 011110 11222222
Q ss_pred HhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhcCCC
Q 046312 341 CNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP-----FQPNPIVLRALLSASSIHDAK 415 (514)
Q Consensus 341 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~p~~~~~~~l~~~~~~~~~~ 415 (514)
|++.-+..+++..-+..... -+ ...|..||+-+....+.+.|..+.++.. ..-|..-+..+.+...+.+.
T Consensus 469 l~se~n~lK~l~~~ekye~~-lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~- 543 (1088)
T KOG4318|consen 469 LNSEYNKLKILCDEEKYEDL-LF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAI- 543 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHH-Hh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHH-
Confidence 33323333333222222221 11 1457788888888888999999988885 33344556677777777777
Q ss_pred CcchHHHHHHHHHHhcC---CCCCchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 046312 416 YQDGVGNEVRRRLLELE---PRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNVGLKK 469 (514)
Q Consensus 416 ~~~~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 469 (514)
...+..+++...+.- |.....+..+.+.....|+.+...+..+-+...|+..
T Consensus 544 --l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 544 --LYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE 598 (1088)
T ss_pred --HHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh
Confidence 666777777666532 2222345577777788899999999999998888865
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.39 E-value=8.5e-09 Score=98.13 Aligned_cols=417 Identities=12% Similarity=0.083 Sum_probs=232.1
Q ss_pred ChHHHHHHHHhcccCCCCChHHHHHHHcccCC---------CCCcccHHHHHHHHHhCCCchH---HHHHHHHHHHcCCC
Q 046312 59 DAQILKELVRFCTLSSSKNLTYARSILCNYVN---------DSVPIPWNNLIRGYAWSDRPRE---AVWVFIDMKRRGIK 126 (514)
Q Consensus 59 ~~~~~~~ll~~~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~~li~~~~~~g~~~~---a~~~~~~m~~~~~~ 126 (514)
++..-+..|..++ +.+++++|.+.+....+ +.+-..|+.+-+..+++-+.-. .-.+++.+.. .-
T Consensus 168 ~P~~~eeyie~L~--~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~--rf 243 (835)
T KOG2047|consen 168 APEAREEYIEYLA--KSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIR--RF 243 (835)
T ss_pred CHHHHHHHHHHHH--hccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcc--cC
Confidence 3344455555555 56666666655555431 0111234444444444322222 2222222222 22
Q ss_pred CCcc--hHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCC----------------------CHHH
Q 046312 127 PTEF--TYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCR----------------------RKRD 182 (514)
Q Consensus 127 p~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~----------------------~~~~ 182 (514)
+|.. .|.+|.+.|.+.|.+++|..++++.... ..+..-|+.+.+.|+.-. +++-
T Consensus 244 tDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~ 321 (835)
T KOG2047|consen 244 TDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLEL 321 (835)
T ss_pred cHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHH
Confidence 4443 5777888888888888888888877655 223333444444443211 1111
Q ss_pred HHHHhhccCCC---------------ChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC------HHHHHHHHHHHh
Q 046312 183 ACKVFDDMCER---------------SVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPD------ETTMLVVLSACT 241 (514)
Q Consensus 183 A~~~~~~~~~~---------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~------~~t~~~ll~~~~ 241 (514)
...-|+.+... ++..|..-+. +..|+..+....|.+..+. +.|- ...|..+...|-
T Consensus 322 ~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe 398 (835)
T KOG2047|consen 322 HMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYE 398 (835)
T ss_pred HHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHH
Confidence 22223322111 1222222222 2245566666667666654 2222 134556666777
Q ss_pred ccCChHHHHHHHHHHHHhCCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHhcCc---------------------CCHH
Q 046312 242 ELGNLSLGKWVHLQLIERGTVLN---CQLGTALIDMYAKCGAVGCARLLFSRMEE---------------------INVW 297 (514)
Q Consensus 242 ~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~---------------------~~~~ 297 (514)
..|+++.|..+|+...+...+-- ..+|-...+.-.+..+++.|..+.+.... .+..
T Consensus 399 ~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlk 478 (835)
T KOG2047|consen 399 NNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLK 478 (835)
T ss_pred hcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHH
Confidence 77777777777777766543322 34555556666666677777766665431 1122
Q ss_pred HHHHHHHHHHHcCCh----------------------------------HHHHHHHHHHHHCCCCCCH-HHHHHHHHHHh
Q 046312 298 TWSAMILGLAQHGYA----------------------------------EEALELFSNMKNSSISPNY-VTFLGVLCACN 342 (514)
Q Consensus 298 ~~~~li~~~~~~~~~----------------------------------~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~ 342 (514)
.|...+...-..|-+ +++.++|++-+..=-.|+. ..|+..+.-+.
T Consensus 479 iWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi 558 (835)
T KOG2047|consen 479 IWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFI 558 (835)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHH
Confidence 333333333333444 4444444433322112332 23343333222
Q ss_pred ---ccCcHHHHHHHHHHHHHhhCCCCchH--HHHHHHHHHHhcCCHHHHHHHHHhCC--CCCC--HHHHHHHHHHHHhcC
Q 046312 343 ---HAGMVEDGYRYFHEMEHVHGIKPMRI--HYHTMADILARAGHLKEAYTFIMNMP--FQPN--PIVLRALLSASSIHD 413 (514)
Q Consensus 343 ---~~~~~~~a~~~~~~~~~~~~~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~--~~~~~~l~~~~~~~~ 413 (514)
....++.|..+|++..+ |++|... .|......=-+.|-...|+.+++++. +++. ...|+..|.-....-
T Consensus 559 ~rygg~klEraRdLFEqaL~--~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~y 636 (835)
T KOG2047|consen 559 KRYGGTKLERARDLFEQALD--GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIY 636 (835)
T ss_pred HHhcCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHh
Confidence 23468899999999997 7776632 23333333345688889999999985 4443 367888887666555
Q ss_pred CCCcchHHHHHHHHHHhcCCCCCchH--HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCceeEEEECCeEEEEEecccC
Q 046312 414 AKYQDGVGNEVRRRLLELEPRGSQNL--VIVANKYAEVGMWEKVSNVRRFMKNVGLKKMKGMSWVELGGSIHRFYSGYDS 491 (514)
Q Consensus 414 ~~~~~~~a~~~~~~~~~~~p~~~~~~--~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (514)
. +...+.+++++++.-|++-.-- ...++.-.+.|..+.|..++..--+..-+...+-.| ...=.-..+
T Consensus 637 G---v~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW-------~twk~FEvr 706 (835)
T KOG2047|consen 637 G---VPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFW-------DTWKEFEVR 706 (835)
T ss_pred C---CcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHH-------HHHHHHHHh
Confidence 5 6778899999999888754322 256777789999999999999877766666666677 555556788
Q ss_pred CcChH
Q 046312 492 QVELA 496 (514)
Q Consensus 492 ~~~~~ 496 (514)
||+-+
T Consensus 707 HGned 711 (835)
T KOG2047|consen 707 HGNED 711 (835)
T ss_pred cCCHH
Confidence 99844
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.38 E-value=2e-10 Score=103.02 Aligned_cols=198 Identities=13% Similarity=0.072 Sum_probs=157.5
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCc---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 046312 264 NCQLGTALIDMYAKCGAVGCARLLFSRMEE---INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCA 340 (514)
Q Consensus 264 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 340 (514)
....+..+...|...|++++|.+.+++..+ .+...+..+...+...|++++|...+++..+.. +.+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 355667777888888888888888887664 345677778888889999999999999888753 3345667777788
Q ss_pred HhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCCCcc
Q 046312 341 CNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP-FQP-NPIVLRALLSASSIHDAKYQD 418 (514)
Q Consensus 341 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~~ 418 (514)
+...|++++|...+++.............+..+...+...|++++|...+++.. ..| +...+..+...+...|+ +
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~---~ 185 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQ---Y 185 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCC---H
Confidence 888999999999999988642222334567778888899999999999998875 333 46678888888999999 9
Q ss_pred hHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 046312 419 GVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNV 465 (514)
Q Consensus 419 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 465 (514)
+.|...++.+.+..|.++..+..++..+...|+.++|..+.+.+...
T Consensus 186 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 186 KDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 99999999998888877777888999999999999999998887653
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.7e-11 Score=117.70 Aligned_cols=253 Identities=12% Similarity=0.133 Sum_probs=187.7
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCcCC
Q 046312 216 GYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEEIN 295 (514)
Q Consensus 216 ~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 295 (514)
.++-.+...|+.|+.+||..+|.-||..|+++.|- +|.-|.-.....+..+++.++.+....++.+.+. +|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 46778888999999999999999999999999999 9999999999999999999999999999887665 788
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHH
Q 046312 296 VWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMAD 375 (514)
Q Consensus 296 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 375 (514)
..+|..|..+|..+|+... |+...+ -...+...+...|.-.....++..+.-..+.-||..+ .+.
T Consensus 83 aDtyt~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n---~il 147 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN---AIL 147 (1088)
T ss_pred hhHHHHHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---HHH
Confidence 9999999999999999876 222222 2233455566667666666777665433355566544 455
Q ss_pred HHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHH
Q 046312 376 ILARAGHLKEAYTFIMNMPFQPNPIVLRALLSASSI-HDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEK 454 (514)
Q Consensus 376 ~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~-~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 454 (514)
...-.|-++.+++++..++..........+++-+.. ... +++-....+...+ .|+ +.+|..+..+-..+|+.+.
T Consensus 148 llv~eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~~ntp---vekLl~~cksl~e-~~~-s~~l~a~l~~alaag~~d~ 222 (1088)
T KOG4318|consen 148 LLVLEGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTP---VEKLLNMCKSLVE-APT-SETLHAVLKRALAAGDVDG 222 (1088)
T ss_pred HHHHHHHHHHHHHHHhhCCcccccchHHHHHHHhccCCch---HHHHHHHHHHhhc-CCC-hHHHHHHHHHHHhcCchhh
Confidence 566778899999999999822111111112333332 233 5555566666666 454 6789999999999999999
Q ss_pred HHHHHHHHHhCCCCCCCceeEEEECCeEEEEEecccCCcChHHHHHHHHHHHH
Q 046312 455 VSNVRRFMKNVGLKKMKGMSWVELGGSIHRFYSGYDSQVELAGIYQILETLNL 507 (514)
Q Consensus 455 A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~ 507 (514)
|..++.+|+++|++-+++++| .++.| .+....+..++.-|++
T Consensus 223 Ak~ll~emke~gfpir~HyFw--------pLl~g---~~~~q~~e~vlrgmqe 264 (1088)
T KOG4318|consen 223 AKNLLYEMKEKGFPIRAHYFW--------PLLLG---INAAQVFEFVLRGMQE 264 (1088)
T ss_pred HHHHHHHHHHcCCCcccccch--------hhhhc---CccchHHHHHHHHHHH
Confidence 999999999999999999999 45555 4455555555555544
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.33 E-value=5.4e-09 Score=98.15 Aligned_cols=395 Identities=12% Similarity=0.031 Sum_probs=275.2
Q ss_pred CCCCChHHHHHHHHhcccCCCCChHHHHHHHcc--cCCCCCcccHHHHHHHHHhCCCchHHHHHHH----HHHHc-----
Q 046312 55 GLQNDAQILKELVRFCTLSSSKNLTYARSILCN--YVNDSVPIPWNNLIRGYAWSDRPREAVWVFI----DMKRR----- 123 (514)
Q Consensus 55 g~~~~~~~~~~ll~~~~~~~~g~~~~A~~~~~~--~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~----~m~~~----- 123 (514)
|+.-|+...--+.+.+. -.|.++.|..++.. +. ..|..+.......+.+..++++|+.++. .+..-
T Consensus 44 ~l~~dp~d~~~~aq~l~--~~~~y~ra~~lit~~~le-~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~ 120 (611)
T KOG1173|consen 44 GLTNDPADIYWLAQVLY--LGRQYERAAHLITTYKLE-KRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEK 120 (611)
T ss_pred hccCChHHHHHHHHHHH--hhhHHHHHHHHHHHhhhh-hhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcch
Confidence 34455555555667666 57888888877764 44 6777888888888889999999999987 22110
Q ss_pred ----CCCCCcch----HHHHH-------HHHhccCCchHHHHHHHHHHHhCCCCCcchHHH---HHHHHHcC--------
Q 046312 124 ----GIKPTEFT----YPFVL-------KACAEISGLNEGMQVQANVTKSGLDSDVYTNNN---LVRFYGSC-------- 177 (514)
Q Consensus 124 ----~~~p~~~~----~~~ll-------~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~---li~~~~~~-------- 177 (514)
-+.+|..- -+.-. ..|....+.++|...+.+.... |...+.+ ++....-.
T Consensus 121 ~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~----D~~c~Ea~~~lvs~~mlt~~Ee~~ll 196 (611)
T KOG1173|consen 121 DAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLA----DAKCFEAFEKLVSAHMLTAQEEFELL 196 (611)
T ss_pred hhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhc----chhhHHHHHHHHHHHhcchhHHHHHH
Confidence 01111111 11111 2333445666676666665533 2222222 22211111
Q ss_pred ---------C-CHHHHHHHhhcc--------------------CCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCC
Q 046312 178 ---------R-RKRDACKVFDDM--------------------CERSVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFE 227 (514)
Q Consensus 178 ---------~-~~~~A~~~~~~~--------------------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 227 (514)
+ +.+.-+.+|+-. .+.++.....-..-+...+++.+..++.+...+.. +
T Consensus 197 ~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-p 275 (611)
T KOG1173|consen 197 ESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-P 275 (611)
T ss_pred hcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-C
Confidence 0 111112222211 01133344444556777899999999999988863 5
Q ss_pred CCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCcCC---HHHHHHHHH
Q 046312 228 PDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEEIN---VWTWSAMIL 304 (514)
Q Consensus 228 p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~ 304 (514)
+....+..-|.++...|+...-..+=..+++.- +....+|-++.-.|.-.|+..+|++.|.+....| ...|-.+..
T Consensus 276 fh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fgh 354 (611)
T KOG1173|consen 276 FHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGH 354 (611)
T ss_pred CCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhH
Confidence 555566666668888898888777777777764 4467888999999999999999999999887644 468999999
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCc-hHHHHHHHHHHHhcCCH
Q 046312 305 GLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPM-RIHYHTMADILARAGHL 383 (514)
Q Consensus 305 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~ 383 (514)
.|+-.|..|+|+..+...-+. ++-...-+.-+.--|.+.++.+.|.++|.+.. ++.|+ +...+-+.-.....+.+
T Consensus 355 sfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~---ai~P~Dplv~~Elgvvay~~~~y 430 (611)
T KOG1173|consen 355 SFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQAL---AIAPSDPLVLHELGVVAYTYEEY 430 (611)
T ss_pred HhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHHHH---hcCCCcchhhhhhhheeehHhhh
Confidence 999999999999999887763 11111112223345778899999999999997 44554 66777777767778899
Q ss_pred HHHHHHHHhCC--------CCC-CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHH
Q 046312 384 KEAYTFIMNMP--------FQP-NPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEK 454 (514)
Q Consensus 384 ~~A~~~~~~~~--------~~p-~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 454 (514)
.+|..+|+... .++ ...+++.|..+|.+.+. +++|...++++..+.|.++.++.+++-+|...|+.+.
T Consensus 431 ~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~---~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~ 507 (611)
T KOG1173|consen 431 PEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNK---YEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDK 507 (611)
T ss_pred HHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhh---HHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHH
Confidence 99999997763 112 45678999999999999 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhC
Q 046312 455 VSNVRRFMKNV 465 (514)
Q Consensus 455 A~~~~~~m~~~ 465 (514)
|.+.|.+....
T Consensus 508 Aid~fhKaL~l 518 (611)
T KOG1173|consen 508 AIDHFHKALAL 518 (611)
T ss_pred HHHHHHHHHhc
Confidence 99999987643
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.33 E-value=9.3e-10 Score=106.05 Aligned_cols=230 Identities=14% Similarity=0.082 Sum_probs=169.0
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHh-----C-CCCch-hHHHHHHHHHHhcCCHHHHHHHHHhcCc----------
Q 046312 231 TTMLVVLSACTELGNLSLGKWVHLQLIER-----G-TVLNC-QLGTALIDMYAKCGAVGCARLLFSRMEE---------- 293 (514)
Q Consensus 231 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~-~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~---------- 293 (514)
.++..+...|...|+++.|..++++.++. | ..|.. ...+.+...|...+++.+|..+|+++..
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 46666777888888888888888777654 2 11222 2234466788888999999888888763
Q ss_pred C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHH-----CCCC-CCH-HHHHHHHHHHhccCcHHHHHHHHHHHHHhhC--C
Q 046312 294 I-NVWTWSAMILGLAQHGYAEEALELFSNMKN-----SSIS-PNY-VTFLGVLCACNHAGMVEDGYRYFHEMEHVHG--I 363 (514)
Q Consensus 294 ~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~g~~-p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~ 363 (514)
| -..+++.|..+|.+.|++++|..++++..+ .|.. |.. ..++.+...|+..+++++|..+++...+... +
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 1 235677778889999999988888877654 1222 222 2366677788899999999999887766432 2
Q ss_pred CCc----hHHHHHHHHHHHhcCCHHHHHHHHHhCC---------CCC-CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHH
Q 046312 364 KPM----RIHYHTMADILARAGHLKEAYTFIMNMP---------FQP-NPIVLRALLSASSIHDAKYQDGVGNEVRRRLL 429 (514)
Q Consensus 364 ~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~---------~~p-~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~ 429 (514)
.++ ..+++.|...|.+.|++++|.++++++. ..+ ....++.+...|...+. ++.|.+.+....
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~---~~~a~~l~~~~~ 436 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKK---YEEAEQLFEEAK 436 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcc---cchHHHHHHHHH
Confidence 232 3578899999999999999999998883 122 24667888889988888 888888877765
Q ss_pred h----cCCCCC---chHHHHHHHHHhcCCHHHHHHHHHHHH
Q 046312 430 E----LEPRGS---QNLVIVANKYAEVGMWEKVSNVRRFMK 463 (514)
Q Consensus 430 ~----~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~ 463 (514)
. .+|+.+ .+|..|+.+|.+.|+++.|.++.+...
T Consensus 437 ~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 437 DIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 4 345554 457799999999999999999988875
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.31 E-value=6.6e-12 Score=81.42 Aligned_cols=50 Identities=26% Similarity=0.405 Sum_probs=44.5
Q ss_pred CChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 046312 193 RSVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTE 242 (514)
Q Consensus 193 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~ 242 (514)
||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67889999999999999999999999999999999999999999988874
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.31 E-value=9e-09 Score=94.96 Aligned_cols=348 Identities=9% Similarity=-0.023 Sum_probs=234.9
Q ss_pred CCCChHHHHHHHcccCC-CCC-cccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcc-hHHHHHHHHhccCCchHHH-
Q 046312 74 SSKNLTYARSILCNYVN-DSV-PIPWNNLIRGYAWSDRPREAVWVFIDMKRRGIKPTEF-TYPFVLKACAEISGLNEGM- 149 (514)
Q Consensus 74 ~~g~~~~A~~~~~~~~~-~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~~a~- 149 (514)
++|.+++|+..+.+... .|+ ++-|...-.+|...|+|+++.+--.+..+ +.|+-. .+..-..++-..|++++|+
T Consensus 127 ~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALE--l~P~Y~KAl~RRA~A~E~lg~~~eal~ 204 (606)
T KOG0547|consen 127 RNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALE--LNPDYVKALLRRASAHEQLGKFDEALF 204 (606)
T ss_pred hcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhh--cCcHHHHHHHHHHHHHHhhccHHHHHH
Confidence 68999999999988754 566 77788888888888999888776666555 344432 3444444555555555443
Q ss_pred ---------------------HHHHHH--------HH-hC--CCCCcchHHHHHHHHHcC--------C-----------
Q 046312 150 ---------------------QVQANV--------TK-SG--LDSDVYTNNNLVRFYGSC--------R----------- 178 (514)
Q Consensus 150 ---------------------~~~~~~--------~~-~~--~~~~~~~~~~li~~~~~~--------~----------- 178 (514)
+++.+. .+ .+ +-|+.....+....+... +
T Consensus 205 D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~l 284 (606)
T KOG0547|consen 205 DVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAALAEAL 284 (606)
T ss_pred hhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchhhHHHHH
Confidence 222211 11 11 123322222222222110 0
Q ss_pred ---------CHHHHHHHhhcc-----CCC-----Chh------hHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHH
Q 046312 179 ---------RKRDACKVFDDM-----CER-----SVV------SWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTM 233 (514)
Q Consensus 179 ---------~~~~A~~~~~~~-----~~~-----~~~------~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~ 233 (514)
.+.+|...+.+- ..+ |.. +.......+.-.|+.-+|..-|+..++....++. .|
T Consensus 285 ~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~-ly 363 (606)
T KOG0547|consen 285 EALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNS-LY 363 (606)
T ss_pred HHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccch-HH
Confidence 111121111111 000 111 1111112234468889999999999887533333 37
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCcC---CHHHHHHHHHHHHHcC
Q 046312 234 LVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEEI---NVWTWSAMILGLAQHG 310 (514)
Q Consensus 234 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~ 310 (514)
..+...|....+.++..+.|....+.+.. |+.+|..-...+.-.+++++|..-|++.... +...|-.+.-+..+.+
T Consensus 364 I~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~ 442 (606)
T KOG0547|consen 364 IKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQH 442 (606)
T ss_pred HHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHH
Confidence 77888899999999999999999988743 7888888888899999999999999998874 4456666666677889
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCc-------hH--HHHHHHHHHHhcC
Q 046312 311 YAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPM-------RI--HYHTMADILARAG 381 (514)
Q Consensus 311 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-------~~--~~~~li~~~~~~g 381 (514)
++++++..|++.++. ++-....|+.....+...++++.|.+.|+...+- .|+ .. +-..++. +.-.+
T Consensus 443 k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L---E~~~~~~~v~~~plV~Ka~l~-~qwk~ 517 (606)
T KOG0547|consen 443 KIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL---EPREHLIIVNAAPLVHKALLV-LQWKE 517 (606)
T ss_pred HHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh---ccccccccccchhhhhhhHhh-hchhh
Confidence 999999999999885 5556788999999999999999999999998853 444 11 1112222 22348
Q ss_pred CHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCC
Q 046312 382 HLKEAYTFIMNMP-FQP-NPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEP 433 (514)
Q Consensus 382 ~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p 433 (514)
++..|..++++.. +.| ....|..|...-...|+ .++|.+++++...+-.
T Consensus 518 d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~---i~eAielFEksa~lAr 568 (606)
T KOG0547|consen 518 DINQAENLLRKAIELDPKCEQAYETLAQFELQRGK---IDEAIELFEKSAQLAR 568 (606)
T ss_pred hHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHH
Confidence 9999999999986 445 45789999999999999 9999999998877643
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.8e-08 Score=88.37 Aligned_cols=364 Identities=10% Similarity=-0.015 Sum_probs=239.6
Q ss_pred HHHHHHHhcccCCCCChHHHHHHHcccCCCCCcccH-HHHHHHHHhCCC--chH-------------HHHHHHHHHHcC-
Q 046312 62 ILKELVRFCTLSSSKNLTYARSILCNYVNDSVPIPW-NNLIRGYAWSDR--PRE-------------AVWVFIDMKRRG- 124 (514)
Q Consensus 62 ~~~~ll~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~li~~~~~~g~--~~~-------------a~~~~~~m~~~~- 124 (514)
.-...+..|. ..++-+.|..++.+.+ ..-...- |.++..+.+.|. .++ |++.+.-..+.+
T Consensus 99 ~~r~~aecy~--~~~n~~~Ai~~l~~~p-~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v 175 (564)
T KOG1174|consen 99 QRRRAAECYR--QIGNTDMAIETLLQVP-PTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGV 175 (564)
T ss_pred HHHHHHHHHH--HHccchHHHHHHhcCC-ccccchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhh
Confidence 3344555666 6777788888877776 3322333 344443433331 122 222222222222
Q ss_pred --------------CCCCcchHHHHHHHHhc--cCCchHHHHHHHHHHHhC-CCCCcchHHHHHHHHHcCCCHHHHHHHh
Q 046312 125 --------------IKPTEFTYPFVLKACAE--ISGLNEGMQVQANVTKSG-LDSDVYTNNNLVRFYGSCRRKRDACKVF 187 (514)
Q Consensus 125 --------------~~p~~~~~~~ll~~~~~--~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~A~~~~ 187 (514)
++|+..+....+.+++. .++-..|.+++-.+.... ++.|......+...+...|+.++|+..|
T Consensus 176 ~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~F 255 (564)
T KOG1174|consen 176 NGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIF 255 (564)
T ss_pred cchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHH
Confidence 23344444444554433 345555555555554443 4556777888889999999999999999
Q ss_pred hccCCCChhhH---HHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCc
Q 046312 188 DDMCERSVVSW---NVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLN 264 (514)
Q Consensus 188 ~~~~~~~~~~~---~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 264 (514)
++...-|+.+. ....-.+.+.|+++....+...+.... .-+...|..-...+...++++.|..+-+..++.+. -+
T Consensus 256 e~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~-r~ 333 (564)
T KOG1174|consen 256 SSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEP-RN 333 (564)
T ss_pred HHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCc-cc
Confidence 88744333322 222333557788888887777766532 23333444444445567788888888877776542 24
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCc---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH-HH
Q 046312 265 CQLGTALIDMYAKCGAVGCARLLFSRMEE---INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVL-CA 340 (514)
Q Consensus 265 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll-~~ 340 (514)
...+-.-...+...|+.++|.-.|+.... -+..+|.-|+.+|...|++.+|..+-++..+. +.-+..+...+. ..
T Consensus 334 ~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V 412 (564)
T KOG1174|consen 334 HEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLV 412 (564)
T ss_pred chHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhccee
Confidence 44555555677888999999999987664 36789999999999999999998888776653 344555555442 22
Q ss_pred H-hccCcHHHHHHHHHHHHHhhCCCCc-hHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCCCc
Q 046312 341 C-NHAGMVEDGYRYFHEMEHVHGIKPM-RIHYHTMADILARAGHLKEAYTFIMNMP-FQPNPIVLRALLSASSIHDAKYQ 417 (514)
Q Consensus 341 ~-~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~ 417 (514)
| .....-++|.+++++.. .+.|+ ....+.+...+...|+.+++..++++.. ..||....+.|...+...+.
T Consensus 413 ~~~dp~~rEKAKkf~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne--- 486 (564)
T KOG1174|consen 413 LFPDPRMREKAKKFAEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNE--- 486 (564)
T ss_pred eccCchhHHHHHHHHHhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhh---
Confidence 2 23344578888888876 44776 4456677788888999999999998876 78899999999999999999
Q ss_pred chHHHHHHHHHHhcCCCCCc
Q 046312 418 DGVGNEVRRRLLELEPRGSQ 437 (514)
Q Consensus 418 ~~~a~~~~~~~~~~~p~~~~ 437 (514)
++++.+.+..+.+++|++..
T Consensus 487 ~Q~am~~y~~ALr~dP~~~~ 506 (564)
T KOG1174|consen 487 PQKAMEYYYKALRQDPKSKR 506 (564)
T ss_pred HHHHHHHHHHHHhcCccchH
Confidence 99999999999999998653
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.4e-11 Score=79.86 Aligned_cols=50 Identities=32% Similarity=0.468 Sum_probs=43.4
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 046312 294 INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNH 343 (514)
Q Consensus 294 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 343 (514)
||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67888888888888888888888888888888888888888888888874
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.6e-09 Score=106.87 Aligned_cols=258 Identities=10% Similarity=-0.038 Sum_probs=167.7
Q ss_pred CCcchHHHHHHHHhc-----cCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHH---------cCCCHHHHHHHhhccCC
Q 046312 127 PTEFTYPFVLKACAE-----ISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYG---------SCRRKRDACKVFDDMCE 192 (514)
Q Consensus 127 p~~~~~~~ll~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~---------~~~~~~~A~~~~~~~~~ 192 (514)
.+...|...+++... .++.++|...+++..+.. +-+...|..+..+|. ..+++++|...+++..+
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 344445555544321 234578888888887663 223445555554443 23457888888888733
Q ss_pred ---CChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHH
Q 046312 193 ---RSVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGT 269 (514)
Q Consensus 193 ---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 269 (514)
.+...+..+...+...|++++|...|++..+.+ +.+...+..+..++...|++++|...++...+.... +...+.
T Consensus 333 ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~ 410 (553)
T PRK12370 333 LDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGI 410 (553)
T ss_pred cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHH
Confidence 356677777778888889999999998888764 334566777788888889999999999888887644 222333
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCc---C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHhcc
Q 046312 270 ALIDMYAKCGAVGCARLLFSRMEE---I-NVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVT-FLGVLCACNHA 344 (514)
Q Consensus 270 ~li~~~~~~g~~~~A~~~~~~~~~---~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~ 344 (514)
.++..+...|++++|...+++..+ | +...+..+..++...|+.++|...+.++... .|+..+ .+.+...|+..
T Consensus 411 ~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~ 488 (553)
T PRK12370 411 TKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQN 488 (553)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhcc
Confidence 344456667888989888887653 3 3455677777888899999999998887653 444333 44444566666
Q ss_pred CcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 046312 345 GMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP 394 (514)
Q Consensus 345 ~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 394 (514)
| +.|...++.+.+.....+....+ +-..|.-.|+.+.+..+ +++.
T Consensus 489 g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~ 533 (553)
T PRK12370 489 S--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFK 533 (553)
T ss_pred H--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhh
Confidence 6 47777777766643333433333 33335556776666665 6664
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.9e-09 Score=96.56 Aligned_cols=190 Identities=11% Similarity=-0.012 Sum_probs=98.0
Q ss_pred ccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHH
Q 046312 95 IPWNNLIRGYAWSDRPREAVWVFIDMKRRGIKPTEFTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFY 174 (514)
Q Consensus 95 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 174 (514)
..+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 345555666666666666666666665532 2233455555666666666666666666666553 22344455555556
Q ss_pred HcCCCHHHHHHHhhccCC-----CChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHH
Q 046312 175 GSCRRKRDACKVFDDMCE-----RSVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLG 249 (514)
Q Consensus 175 ~~~~~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a 249 (514)
...|++++|.+.+++... .....+..+...+...|++++|...+.+..+.. +.+...+..+...+...|++++|
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHH
Confidence 666666666666555522 122334444555555555666655555555432 22233444455555555555555
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 046312 250 KWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLF 288 (514)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 288 (514)
...+++..+.. +.+...+..+...+...|+.++|..+.
T Consensus 189 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~ 226 (234)
T TIGR02521 189 RAYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYG 226 (234)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 55555554441 223333333444444444444444443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.1e-07 Score=92.65 Aligned_cols=404 Identities=13% Similarity=0.067 Sum_probs=268.1
Q ss_pred HHHHHhCCCCChHHHHHHHHhcccCCCCChHHHHHHHcccCC--CCCcccHHHHHHHHHhCCCchHHHHHHHHHHHcCCC
Q 046312 49 AQIQVSGLQNDAQILKELVRFCTLSSSKNLTYARSILCNYVN--DSVPIPWNNLIRGYAWSDRPREAVWVFIDMKRRGIK 126 (514)
Q Consensus 49 ~~~~~~g~~~~~~~~~~ll~~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 126 (514)
..+....+.-|+.+|..|.-+.. .+|+++.+-+.|++... ......|+.+-..+...|.-..|+.+++.-....-.
T Consensus 312 ~k~r~~~~qnd~ai~d~Lt~al~--~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ 389 (799)
T KOG4162|consen 312 RKLRLKKFQNDAAIFDHLTFALS--RCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQ 389 (799)
T ss_pred HHHHHhhhcchHHHHHHHHHHHH--HHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccC
Confidence 33444557789999999999988 99999999999998751 223356888888899999999999999886554323
Q ss_pred C-CcchHHHHHHHHh-ccCCchHHHHHHHHHHHh--CC--CCCcchHHHHHHHHHcC-----------CCHHHHHHHhhc
Q 046312 127 P-TEFTYPFVLKACA-EISGLNEGMQVQANVTKS--GL--DSDVYTNNNLVRFYGSC-----------RRKRDACKVFDD 189 (514)
Q Consensus 127 p-~~~~~~~ll~~~~-~~g~~~~a~~~~~~~~~~--~~--~~~~~~~~~li~~~~~~-----------~~~~~A~~~~~~ 189 (514)
| |...+...-+.|. +.+..++++.+-.++... +. ......|..+.-+|... ....++.+.+++
T Consensus 390 ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~ 469 (799)
T KOG4162|consen 390 PSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEE 469 (799)
T ss_pred CCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHH
Confidence 4 3444544445554 457788888877777662 11 22344555555555432 112456777777
Q ss_pred cCCC---ChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchh
Q 046312 190 MCER---SVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQ 266 (514)
Q Consensus 190 ~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 266 (514)
..+. |..+--.+.--|+..++.+.|+...++..+-+-.-+...+..+.-.+...+++.+|+.+.+.....-.. |..
T Consensus 470 av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~-N~~ 548 (799)
T KOG4162|consen 470 AVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD-NHV 548 (799)
T ss_pred HHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh-hhh
Confidence 7332 333322333346778899999999999999866778889999998999999999999998877654211 111
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCc--------------------------------CCHHHHHHHHHHHHHcC---C
Q 046312 267 LGTALIDMYAKCGAVGCARLLFSRMEE--------------------------------INVWTWSAMILGLAQHG---Y 311 (514)
Q Consensus 267 ~~~~li~~~~~~g~~~~A~~~~~~~~~--------------------------------~~~~~~~~li~~~~~~~---~ 311 (514)
....-++.-...++.+++..+...+.. ..+.++..+.......+ .
T Consensus 549 l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~ 628 (799)
T KOG4162|consen 549 LMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAG 628 (799)
T ss_pred hchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcc
Confidence 111112222234555555443333221 01112222211111100 0
Q ss_pred hHHHHHHHHHHHHCCCCC--C------HHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCH
Q 046312 312 AEEALELFSNMKNSSISP--N------YVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHL 383 (514)
Q Consensus 312 ~~~a~~~~~~m~~~g~~p--~------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 383 (514)
.+.. +...-+.| + ...|......+.+.+..++|...+.+.... ..-....|......+...|++
T Consensus 629 se~~------Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~--~~l~~~~~~~~G~~~~~~~~~ 700 (799)
T KOG4162|consen 629 SELK------LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI--DPLSASVYYLRGLLLEVKGQL 700 (799)
T ss_pred cccc------cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc--chhhHHHHHHhhHHHHHHHhh
Confidence 0100 11111222 2 223445556778888999998888887742 233466777777888899999
Q ss_pred HHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCCCCcchHHHH--HHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHH
Q 046312 384 KEAYTFIMNMP-FQPN-PIVLRALLSASSIHDAKYQDGVGNE--VRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVR 459 (514)
Q Consensus 384 ~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~~~~~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 459 (514)
++|.+.|.... +.|+ +.+..++...+...|+ -..+.. ++..+.+++|.++.+|..|+..+.+.|+.++|.+.|
T Consensus 701 ~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~---~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf 777 (799)
T KOG4162|consen 701 EEAKEAFLVALALDPDHVPSMTALAELLLELGS---PRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECF 777 (799)
T ss_pred HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCC---cchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHH
Confidence 99999998886 6665 5778889999999997 666666 999999999999999999999999999999999999
Q ss_pred HHHHhCC
Q 046312 460 RFMKNVG 466 (514)
Q Consensus 460 ~~m~~~~ 466 (514)
+...+..
T Consensus 778 ~aa~qLe 784 (799)
T KOG4162|consen 778 QAALQLE 784 (799)
T ss_pred HHHHhhc
Confidence 9887544
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=9.2e-09 Score=103.91 Aligned_cols=257 Identities=15% Similarity=0.031 Sum_probs=180.5
Q ss_pred ChhhHHHHHHHHHh-----CCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHh---------ccCChHHHHHHHHHHHH
Q 046312 194 SVVSWNVIITVCVE-----NLWLGEAVGYFVKMKDLGFEPD-ETTMLVVLSACT---------ELGNLSLGKWVHLQLIE 258 (514)
Q Consensus 194 ~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~~~~p~-~~t~~~ll~~~~---------~~g~~~~a~~~~~~~~~ 258 (514)
+...|...+++... .+.+++|...|++..+. .|+ ...+..+..++. ..+++++|...++++.+
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 45566666665322 23467999999999876 454 445555544433 23458899999999998
Q ss_pred hCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCc--C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHH
Q 046312 259 RGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEE--I-NVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNY-VTF 334 (514)
Q Consensus 259 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~ 334 (514)
.+.. +...+..+...+...|++++|...|++..+ | +...+..+...+...|++++|...+++..+. .|+. ..+
T Consensus 333 ldP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~ 409 (553)
T PRK12370 333 LDHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAG 409 (553)
T ss_pred cCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhH
Confidence 8633 677888888899999999999999999875 4 4567888889999999999999999999985 3442 233
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHhhCCCCc-hHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCHHH-HHHHHHHHHh
Q 046312 335 LGVLCACNHAGMVEDGYRYFHEMEHVHGIKPM-RIHYHTMADILARAGHLKEAYTFIMNMP-FQPNPIV-LRALLSASSI 411 (514)
Q Consensus 335 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~~~~-~~~l~~~~~~ 411 (514)
..++..+...|++++|...++++.+. ..|+ ...+..+..++...|+.++|...+.++. ..|+... .+.+...+..
T Consensus 410 ~~~~~~~~~~g~~eeA~~~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~ 487 (553)
T PRK12370 410 ITKLWITYYHTGIDDAIRLGDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQ 487 (553)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhc
Confidence 33444566689999999999998764 2343 4456778888999999999999999876 4555443 3444445555
Q ss_pred cCCCCcchHHHHHHHHHHhcC---CCCCchHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 046312 412 HDAKYQDGVGNEVRRRLLELE---PRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNVG 466 (514)
Q Consensus 412 ~~~~~~~~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 466 (514)
.|+ .+...++.+.+.. +.++ ..+...|.-.|+.+.+... +++.+.+
T Consensus 488 ~g~-----~a~~~l~~ll~~~~~~~~~~---~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 488 NSE-----RALPTIREFLESEQRIDNNP---GLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred cHH-----HHHHHHHHHHHHhhHhhcCc---hHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 543 4666566655533 4433 2366666667777776666 8777654
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.8e-09 Score=94.44 Aligned_cols=224 Identities=13% Similarity=-0.013 Sum_probs=130.0
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCc--CCHHH-HHHHHHHHHHcCCh
Q 046312 236 VLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEE--INVWT-WSAMILGLAQHGYA 312 (514)
Q Consensus 236 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~-~~~li~~~~~~~~~ 312 (514)
+.++|.+.|.+.+|.+.++.-++.. |-+.||..|.+.|.+..+++.|+.+|.+..+ |..+| ..-+...+-..++.
T Consensus 229 ~gkCylrLgm~r~AekqlqssL~q~--~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~ 306 (478)
T KOG1129|consen 229 MGKCYLRLGMPRRAEKQLQSSLTQF--PHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQ 306 (478)
T ss_pred HHHHHHHhcChhhhHHHHHHHhhcC--CchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhH
Confidence 3344444444444444444333332 2233333444444444444444444444433 22222 22233444555566
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHh
Q 046312 313 EEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMN 392 (514)
Q Consensus 313 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 392 (514)
++|.++|++..+.. ..+......+...|.-.++.+.|..+|+++.+. |+ -+...|+.+.-+|.-.+++|-++.-|.+
T Consensus 307 ~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm-G~-~speLf~NigLCC~yaqQ~D~~L~sf~R 383 (478)
T KOG1129|consen 307 EDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQM-GA-QSPELFCNIGLCCLYAQQIDLVLPSFQR 383 (478)
T ss_pred HHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHh-cC-CChHHHhhHHHHHHhhcchhhhHHHHHH
Confidence 66666666655532 233344444445555556666666666666654 43 2344555566666666666666666655
Q ss_pred CC---CCCC--HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 046312 393 MP---FQPN--PIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNVGL 467 (514)
Q Consensus 393 ~~---~~p~--~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 467 (514)
.. ..|+ ...|-.|.......|| +..|.+.++.+...++++..+++.|+..-.+.|+.++|..+++.......
T Consensus 384 Alstat~~~~aaDvWYNlg~vaV~iGD---~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P 460 (478)
T KOG1129|consen 384 ALSTATQPGQAADVWYNLGFVAVTIGD---FNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMP 460 (478)
T ss_pred HHhhccCcchhhhhhhccceeEEeccc---hHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCc
Confidence 53 2233 3456566666777888 88888889988888888888899999989999999999999988876554
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.3e-06 Score=83.72 Aligned_cols=393 Identities=13% Similarity=0.101 Sum_probs=247.0
Q ss_pred hHHHHHHHHhcccCCCCChHHHHHHHcccCC----CCCcccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHH
Q 046312 60 AQILKELVRFCTLSSSKNLTYARSILCNYVN----DSVPIPWNNLIRGYAWSDRPREAVWVFIDMKRRGIKPTEFTYPFV 135 (514)
Q Consensus 60 ~~~~~~ll~~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 135 (514)
+.+|-..++... +.|++...+..|++... ......|...+......|-++-++.+|++..+- ++..-.--
T Consensus 102 pRIwl~Ylq~l~--~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eey 175 (835)
T KOG2047|consen 102 PRIWLDYLQFLI--KQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEY 175 (835)
T ss_pred CHHHHHHHHHHH--hcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHH
Confidence 355666666666 78888888888876531 222345888888888888888999999888663 33346666
Q ss_pred HHHHhccCCchHHHHHHHHHHHhC------CCCCcchHHHHHHHHHcCCCHH---HHHHHhhccCCC----ChhhHHHHH
Q 046312 136 LKACAEISGLNEGMQVQANVTKSG------LDSDVYTNNNLVRFYGSCRRKR---DACKVFDDMCER----SVVSWNVII 202 (514)
Q Consensus 136 l~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~~li~~~~~~~~~~---~A~~~~~~~~~~----~~~~~~~li 202 (514)
+..++..+++++|.+.+...+... .+.+...|..+.+..++.-+.- ....+++.+..+ =...|+.|.
T Consensus 176 ie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLA 255 (835)
T KOG2047|consen 176 IEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLA 255 (835)
T ss_pred HHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHH
Confidence 778888899999888887765321 1334455555555554443221 233344444221 234677777
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----------------------------------------
Q 046312 203 TVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTE---------------------------------------- 242 (514)
Q Consensus 203 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~---------------------------------------- 242 (514)
+-|.+.|.+++|..+|++.... ..+..-|+.+.++|++
T Consensus 256 dYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr 333 (835)
T KOG2047|consen 256 DYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRR 333 (835)
T ss_pred HHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhcc
Confidence 7777777777777777776543 1222222222222211
Q ss_pred --------------------------cCChHHHHHHHHHHHHhCCCC------chhHHHHHHHHHHhcCCHHHHHHHHHh
Q 046312 243 --------------------------LGNLSLGKWVHLQLIERGTVL------NCQLGTALIDMYAKCGAVGCARLLFSR 290 (514)
Q Consensus 243 --------------------------~g~~~~a~~~~~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~ 290 (514)
.|+..+....+.++++. +.| -...+-.+.+.|-..|+++.|..+|++
T Consensus 334 ~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifek 412 (835)
T KOG2047|consen 334 PLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEK 412 (835)
T ss_pred chHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 12222333333333332 111 123566778888999999999999999
Q ss_pred cCcCC-------HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-----------CCC------HHHHHHHHHHHhccCc
Q 046312 291 MEEIN-------VWTWSAMILGLAQHGYAEEALELFSNMKNSSI-----------SPN------YVTFLGVLCACNHAGM 346 (514)
Q Consensus 291 ~~~~~-------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-----------~p~------~~~~~~ll~~~~~~~~ 346 (514)
..+.+ ..+|..-...-.++.+++.|+.++++.....- ++. ...|...+..-...|-
T Consensus 413 a~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gt 492 (835)
T KOG2047|consen 413 ATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGT 492 (835)
T ss_pred hhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 88732 24566666667788889999998887754211 111 2233444444455678
Q ss_pred HHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC--CC-CCH-HHHHHHHHHHHhcCCCCcchHHH
Q 046312 347 VEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP--FQ-PNP-IVLRALLSASSIHDAKYQDGVGN 422 (514)
Q Consensus 347 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~-p~~-~~~~~l~~~~~~~~~~~~~~~a~ 422 (514)
++....+|+.+.+-.-..|.... | ....+-...-++++.+++++-. ++ |+. ..|+..+..+.+.-.+...+.++
T Consensus 493 festk~vYdriidLriaTPqii~-N-yAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraR 570 (835)
T KOG2047|consen 493 FESTKAVYDRIIDLRIATPQIII-N-YAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERAR 570 (835)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHH-H-HHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 88888899998875333444221 1 2222445666899999999875 33 443 67888777776654455699999
Q ss_pred HHHHHHHhcCCCCC--chHHHHHHHHHhcCCHHHHHHHHHHHH
Q 046312 423 EVRRRLLELEPRGS--QNLVIVANKYAEVGMWEKVSNVRRFMK 463 (514)
Q Consensus 423 ~~~~~~~~~~p~~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~ 463 (514)
.+++++.+.-|... ..|...+..-.+-|....|++++++..
T Consensus 571 dLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 571 DLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERAT 613 (835)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 99999999776322 245566666677899999999999864
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.4e-07 Score=88.75 Aligned_cols=419 Identities=11% Similarity=0.036 Sum_probs=271.1
Q ss_pred CCCChHHHHHHHcccCC--CCCcccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCc-chHHHHHHHHhccCCchHHHH
Q 046312 74 SSKNLTYARSILCNYVN--DSVPIPWNNLIRGYAWSDRPREAVWVFIDMKRRGIKPTE-FTYPFVLKACAEISGLNEGMQ 150 (514)
Q Consensus 74 ~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~~a~~ 150 (514)
..|+.++|......-.. ..+.+.|..+.-.+....++++|++.|...... .||. ..|.-+.-.-++.|+++....
T Consensus 53 ~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~--~~dN~qilrDlslLQ~QmRd~~~~~~ 130 (700)
T KOG1156|consen 53 CLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKI--EKDNLQILRDLSLLQIQMRDYEGYLE 130 (700)
T ss_pred cccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHHhhhhHHH
Confidence 57999999998887652 344577888888888889999999999998875 4544 456666556678899999988
Q ss_pred HHHHHHHhCCCCCcchHHHHHHHHHcCCCHHHHHHHhhccC-----CCChhhHHHH------HHHHHhCCChhHHHHHHH
Q 046312 151 VQANVTKSGLDSDVYTNNNLVRFYGSCRRKRDACKVFDDMC-----ERSVVSWNVI------ITVCVENLWLGEAVGYFV 219 (514)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~-----~~~~~~~~~l------i~~~~~~~~~~~a~~~~~ 219 (514)
...++.+.. +-....|..+.-++.-.|+...|..++++.. .++...|... .....+.|.++.|++.+.
T Consensus 131 tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~ 209 (700)
T KOG1156|consen 131 TRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLL 209 (700)
T ss_pred HHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 888887763 3345677888888888999999999887772 2444433322 234567788888888876
Q ss_pred HHHHCCCCCCHHHH-HHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH-HHHHhcCc--CC
Q 046312 220 KMKDLGFEPDETTM-LVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCAR-LLFSRMEE--IN 295 (514)
Q Consensus 220 ~m~~~~~~p~~~t~-~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~~~~--~~ 295 (514)
.-... ..|...+ .+-...+.+.+++++|..++..++..++ -+...|..+..++.+-.+.-++. .+|....+ |.
T Consensus 210 ~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnP-dn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r 286 (700)
T KOG1156|consen 210 DNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNP-DNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPR 286 (700)
T ss_pred hhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCc-hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcc
Confidence 65432 2233333 3345567788999999999999998862 24445555555665333333333 66665543 11
Q ss_pred HHHHHHHHHHHHH-cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhh-C-----------
Q 046312 296 VWTWSAMILGLAQ-HGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVH-G----------- 362 (514)
Q Consensus 296 ~~~~~~li~~~~~-~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~----------- 362 (514)
...-..+--.... ..-.+..-.++..+.+.|+++-...+.++ |-.....+-..++.-.+.... |
T Consensus 287 ~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SL---yk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~ 363 (700)
T KOG1156|consen 287 HECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSL---YKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGK 363 (700)
T ss_pred cccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHH---HhchhHhHHHHHHHHHHHhhcccccCCCcccccc
Confidence 1111111011111 22234556677777888876544443333 222221111111111111100 1
Q ss_pred -CCCchHHHH--HHHHHHHhcCCHHHHHHHHHhCC-CCCCH-HHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCc
Q 046312 363 -IKPMRIHYH--TMADILARAGHLKEAYTFIMNMP-FQPNP-IVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQ 437 (514)
Q Consensus 363 -~~p~~~~~~--~li~~~~~~g~~~~A~~~~~~~~-~~p~~-~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 437 (514)
-+|....|. .++..+-+.|+++.|...++... ..|+. ..|..=...+...|+ ++.|...++.+.+++..|..
T Consensus 364 ~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~---l~eAa~~l~ea~elD~aDR~ 440 (700)
T KOG1156|consen 364 QEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGL---LDEAAAWLDEAQELDTADRA 440 (700)
T ss_pred cCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCC---hHHHHHHHHHHHhccchhHH
Confidence 145555444 56778889999999999999886 45553 445455577889999 99999999999999866553
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-----CCceeEEEECCeEEEE--EecccCCcChHHHHHHHHHHHHHhh
Q 046312 438 NLVIVANKYAEVGMWEKVSNVRRFMKNVGLKK-----MKGMSWVELGGSIHRF--YSGYDSQVELAGIYQILETLNLHMK 510 (514)
Q Consensus 438 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~-----~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~~~~~~m~~~~~ 510 (514)
.-..-+.-..++++.++|.++.....+.|... ...+.| ..+ ..+|.+.+++..|+.-+..+-++.+
T Consensus 441 INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmW-------f~~E~g~ay~r~~k~g~ALKkfh~i~k~~~ 513 (700)
T KOG1156|consen 441 INSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMW-------FQLEDGEAYLRQNKLGLALKKFHEIEKHYK 513 (700)
T ss_pred HHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHH-------HhHhhhHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 33367788889999999999999998776522 234667 233 2458888888888887777776654
Q ss_pred h
Q 046312 511 V 511 (514)
Q Consensus 511 ~ 511 (514)
+
T Consensus 514 ~ 514 (700)
T KOG1156|consen 514 T 514 (700)
T ss_pred H
Confidence 3
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.17 E-value=1e-08 Score=100.17 Aligned_cols=187 Identities=10% Similarity=0.028 Sum_probs=134.2
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhh-------------CCCCchH--HHHHHHHHHH
Q 046312 314 EALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVH-------------GIKPMRI--HYHTMADILA 378 (514)
Q Consensus 314 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-------------~~~p~~~--~~~~li~~~~ 378 (514)
.+..++..+...|+++ +|..+-..|......+-...++....... .-.|+.. ++..+...|.
T Consensus 129 ~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd 205 (517)
T PF12569_consen 129 RLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYD 205 (517)
T ss_pred HHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHH
Confidence 3555666777777544 34444444555555555555555554321 1124443 3455677788
Q ss_pred hcCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHH
Q 046312 379 RAGHLKEAYTFIMNMP-FQPN-PIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVS 456 (514)
Q Consensus 379 ~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 456 (514)
..|++++|++.+++.. ..|+ +..|..-...+.+.|+ +.+|.+.++.+.++++.|-..-...+..+.++|+.++|.
T Consensus 206 ~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~---~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~ 282 (517)
T PF12569_consen 206 YLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGD---LKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAE 282 (517)
T ss_pred HhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHH
Confidence 9999999999999875 5665 6778888888999999 999999999999999988766668888999999999999
Q ss_pred HHHHHHHhCCCCCCC-----ceeEEEECCeEEEEEecccCCcChHHHHHHHHHHHHHhhh
Q 046312 457 NVRRFMKNVGLKKMK-----GMSWVELGGSIHRFYSGYDSQVELAGIYQILETLNLHMKV 511 (514)
Q Consensus 457 ~~~~~m~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~ 511 (514)
+++....+.+..+.. .+.|. ......+|.+.|++..|+..+..+..++.+
T Consensus 283 ~~~~~Ftr~~~~~~~~L~~mQc~Wf-----~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~ 337 (517)
T PF12569_consen 283 KTASLFTREDVDPLSNLNDMQCMWF-----ETECAEAYLRQGDYGLALKRFHAVLKHFDD 337 (517)
T ss_pred HHHHhhcCCCCCcccCHHHHHHHHH-----HHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 999999877764332 35561 012245789999999999999888877653
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.9e-08 Score=92.49 Aligned_cols=267 Identities=12% Similarity=0.038 Sum_probs=181.9
Q ss_pred HHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCH
Q 046312 101 IRGYAWSDRPREAVWVFIDMKRRGIKPTEFTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRK 180 (514)
Q Consensus 101 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 180 (514)
.+-+...+++.+..++++...+. .+++...+..-|.++...|+..+-.-+=.++++.- |..+.+|-++.--|...|..
T Consensus 251 ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i~k~ 328 (611)
T KOG1173|consen 251 ADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMIGKY 328 (611)
T ss_pred HHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHhcCc
Confidence 34556678888888888887775 36666667777778888888887777777777663 55677888888888888888
Q ss_pred HHHHHHhhccCCCC---hhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHH
Q 046312 181 RDACKVFDDMCERS---VVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLI 257 (514)
Q Consensus 181 ~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 257 (514)
.+|++.|.+...-| ...|-.....|.-.|..+.|+..|...-+. ++....-+..+---|.+.++++.|.++|.+..
T Consensus 329 seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ 407 (611)
T KOG1173|consen 329 SEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQAL 407 (611)
T ss_pred HHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 88888888774333 357888888888888888888877776553 12122223334445667788888888888877
Q ss_pred HhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCc---------C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 046312 258 ERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEE---------I-NVWTWSAMILGLAQHGYAEEALELFSNMKNSSI 327 (514)
Q Consensus 258 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---------~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 327 (514)
... +.|+.+.+-+.-.....+.+.+|..+|+.... + -..+++.|..+|.+.+.+++|+..+++.+.. .
T Consensus 408 ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l-~ 485 (611)
T KOG1173|consen 408 AIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL-S 485 (611)
T ss_pred hcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc-C
Confidence 654 33666777777777777788888877776552 0 2234666666777777777777777776654 2
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHH
Q 046312 328 SPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMAD 375 (514)
Q Consensus 328 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 375 (514)
+-+..++.++.-.|...|+++.|...|.+.. .+.|+-.+-..++.
T Consensus 486 ~k~~~~~asig~iy~llgnld~Aid~fhKaL---~l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 486 PKDASTHASIGYIYHLLGNLDKAIDHFHKAL---ALKPDNIFISELLK 530 (611)
T ss_pred CCchhHHHHHHHHHHHhcChHHHHHHHHHHH---hcCCccHHHHHHHH
Confidence 4456666666666667777777777776665 55666555554444
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.16 E-value=4.4e-09 Score=92.06 Aligned_cols=256 Identities=10% Similarity=-0.010 Sum_probs=208.5
Q ss_pred HHHcCCCHHHHHHHhhcc-----CCC--------ChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 046312 173 FYGSCRRKRDACKVFDDM-----CER--------SVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSA 239 (514)
Q Consensus 173 ~~~~~~~~~~A~~~~~~~-----~~~--------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~ 239 (514)
.|...+|+..|..+.... ..+ |=..-+.+..+|.+.|.+.+|.+.|+...+. .|-+.||..|-+.
T Consensus 188 ~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskv 265 (478)
T KOG1129|consen 188 LFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKV 265 (478)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHH
Confidence 345667777776544333 111 1122357889999999999999999998887 6777899999999
Q ss_pred HhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCc---CCHHHHHHHHHHHHHcCChHHHH
Q 046312 240 CTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEE---INVWTWSAMILGLAQHGYAEEAL 316 (514)
Q Consensus 240 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~ 316 (514)
|.+..++..|..++.+-++.- +-++....-+.+.+-..++.++|.++|+...+ .++.....+...|.-.++.+-|+
T Consensus 266 Y~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~Al 344 (478)
T KOG1129|consen 266 YQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMAL 344 (478)
T ss_pred HHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHH
Confidence 999999999999999988764 33555556777889999999999999999876 46777777888999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCc--hHHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 046312 317 ELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPM--RIHYHTMADILARAGHLKEAYTFIMNMP 394 (514)
Q Consensus 317 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~ 394 (514)
.+|+++++.|+ -+...|+.+.-+|.-.+++|-++.-|++.... .-.|+ ..+|..+.....-.|++..|.+.|+-..
T Consensus 345 ryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf~RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL 422 (478)
T KOG1129|consen 345 RYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSFQRALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLAL 422 (478)
T ss_pred HHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHHHHHHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHh
Confidence 99999999985 45677888888888999999999999998874 44455 5578888888888999999999998876
Q ss_pred --CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCC
Q 046312 395 --FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGS 436 (514)
Q Consensus 395 --~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 436 (514)
..-....++.|.-.-.+.|+ ++.|+..+..+....|+-.
T Consensus 423 ~~d~~h~ealnNLavL~~r~G~---i~~Arsll~~A~s~~P~m~ 463 (478)
T KOG1129|consen 423 TSDAQHGEALNNLAVLAARSGD---ILGARSLLNAAKSVMPDMA 463 (478)
T ss_pred ccCcchHHHHHhHHHHHhhcCc---hHHHHHHHHHhhhhCcccc
Confidence 33356889999888899999 9999999999999988743
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.2e-06 Score=81.43 Aligned_cols=403 Identities=12% Similarity=0.088 Sum_probs=223.6
Q ss_pred cChhHHHHHHHHHHHhCCCCChHHHHHHHHhcccCCCCChHHHHHHHcccCCCCCcccHHHHHHHH--HhCCCchHHHHH
Q 046312 39 CSKKHLYQIHAQIQVSGLQNDAQILKELVRFCTLSSSKNLTYARSILCNYVNDSVPIPWNNLIRGY--AWSDRPREAVWV 116 (514)
Q Consensus 39 ~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~--~~~g~~~~a~~~ 116 (514)
++.+.+.+..+.+...+ +-+...+..=+-+.. +.+.+++|+.+.+.-. .......-.+=.+| .+.+..++|+..
T Consensus 26 ~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValI--q~~ky~~ALk~ikk~~-~~~~~~~~~fEKAYc~Yrlnk~Dealk~ 101 (652)
T KOG2376|consen 26 GEYEEAVKTANKILSIV-PDDEDAIRCKVVALI--QLDKYEDALKLIKKNG-ALLVINSFFFEKAYCEYRLNKLDEALKT 101 (652)
T ss_pred hHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhh--hhhHHHHHHHHHHhcc-hhhhcchhhHHHHHHHHHcccHHHHHHH
Confidence 34555556666666655 444556666666666 7899999997776644 21221111123333 367888888888
Q ss_pred HHHHHHcCCCCCcc-hHHHHHHHHhccCCchHHHHHHHHHHHhCCCC-CcchHHHHHHHHHcCCCHHHHHHHhhccCCCC
Q 046312 117 FIDMKRRGIKPTEF-TYPFVLKACAEISGLNEGMQVQANVTKSGLDS-DVYTNNNLVRFYGSCRRKRDACKVFDDMCERS 194 (514)
Q Consensus 117 ~~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~ 194 (514)
++ |..++.. +...-...|-+.|++++|..+|+.+.+++.+- +...-..++.+ +-.-.+. +.+..+...
T Consensus 102 ~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~----~a~l~~~-~~q~v~~v~ 171 (652)
T KOG2376|consen 102 LK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAV----AAALQVQ-LLQSVPEVP 171 (652)
T ss_pred Hh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHH----HHhhhHH-HHHhccCCC
Confidence 87 3333333 55555677888899999999999887765321 11111111111 1111111 233332222
Q ss_pred hhhHHH---HHHHHHhCCChhHHHHHHHHHHHCC-------------CCCCHH-HHHHHHHHHhccCChHHHHHHHHHHH
Q 046312 195 VVSWNV---IITVCVENLWLGEAVGYFVKMKDLG-------------FEPDET-TMLVVLSACTELGNLSLGKWVHLQLI 257 (514)
Q Consensus 195 ~~~~~~---li~~~~~~~~~~~a~~~~~~m~~~~-------------~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~ 257 (514)
..+|.. ....++..|++.+|+++++.....+ +.-+.. .-..+...+-..|+-++|..++...+
T Consensus 172 e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i 251 (652)
T KOG2376|consen 172 EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDII 251 (652)
T ss_pred cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 223322 2334556677777777776662211 000001 11123334455677777777777666
Q ss_pred HhCCCCch----hHHHHHHHHH---------------------------------------------HhcCCHHHHHHHH
Q 046312 258 ERGTVLNC----QLGTALIDMY---------------------------------------------AKCGAVGCARLLF 288 (514)
Q Consensus 258 ~~~~~~~~----~~~~~li~~~---------------------------------------------~~~g~~~~A~~~~ 288 (514)
+.... |. ...|.|+.+- .-.+..+.+.++.
T Consensus 252 ~~~~~-D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~ 330 (652)
T KOG2376|consen 252 KRNPA-DEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELS 330 (652)
T ss_pred HhcCC-CchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 65432 21 1111111110 0112222222222
Q ss_pred HhcCcC-CHHHHHHHHHHH--HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHH--------HH
Q 046312 289 SRMEEI-NVWTWSAMILGL--AQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFH--------EM 357 (514)
Q Consensus 289 ~~~~~~-~~~~~~~li~~~--~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~--------~~ 357 (514)
...... ....+..++... ++.....++.+++...-+....-........+......|+++.|.+++. .+
T Consensus 331 a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~ 410 (652)
T KOG2376|consen 331 ASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSI 410 (652)
T ss_pred HhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhh
Confidence 222221 122333343332 2223466777777766654222224455566677888999999999999 55
Q ss_pred HHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC--------CCCC-HHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 046312 358 EHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP--------FQPN-PIVLRALLSASSIHDAKYQDGVGNEVRRRL 428 (514)
Q Consensus 358 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~--------~~p~-~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~ 428 (514)
.+. +-.|. +...+...+.+.++.+.|..++.+.. .++. ..++.-+...-.++|+ .++|...++.+
T Consensus 411 ~~~-~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~---~~ea~s~leel 484 (652)
T KOG2376|consen 411 LEA-KHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGN---EEEASSLLEEL 484 (652)
T ss_pred hhh-ccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCc---hHHHHHHHHHH
Confidence 543 44454 44456677888888777777776663 2221 1333444444567788 99999999999
Q ss_pred HhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 046312 429 LELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMK 463 (514)
Q Consensus 429 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 463 (514)
.+.+|++..+...++.+|++. +.+.|..+-+.+.
T Consensus 485 ~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L~ 518 (652)
T KOG2376|consen 485 VKFNPNDTDLLVQLVTAYARL-DPEKAESLSKKLP 518 (652)
T ss_pred HHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhcCC
Confidence 999999999999999999988 5788888776653
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.4e-08 Score=93.95 Aligned_cols=189 Identities=15% Similarity=0.052 Sum_probs=90.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCc---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHh
Q 046312 267 LGTALIDMYAKCGAVGCARLLFSRMEE---INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPN-YVTFLGVLCACN 342 (514)
Q Consensus 267 ~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~ 342 (514)
.|..+...|...|+.++|...|++..+ .+...|+.+...+...|++++|...|++..+. .|+ ..++..+..++.
T Consensus 66 ~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~ 143 (296)
T PRK11189 66 LHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAYLNRGIALY 143 (296)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 344444555555555555555555443 23455555555666666666666666665542 333 344444555555
Q ss_pred ccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCCCcchH
Q 046312 343 HAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP--FQPNPIVLRALLSASSIHDAKYQDGV 420 (514)
Q Consensus 343 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~~~~ 420 (514)
..|++++|.+.++...+. .|+..........+...++.++|.+.|++.. ..|+...+ .......|+ ...
T Consensus 144 ~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~~---~~~~~~lg~---~~~ 214 (296)
T PRK11189 144 YGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKEQWGW---NIVEFYLGK---ISE 214 (296)
T ss_pred HCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCccccHH---HHHHHHccC---CCH
Confidence 556666666666665543 3332211111112233455666666664432 12221111 112222333 322
Q ss_pred HHHHHHHHH-------hcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 046312 421 GNEVRRRLL-------ELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNVGL 467 (514)
Q Consensus 421 a~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 467 (514)
+ +.++.+. ++.|+.+.+|..++.++.+.|++++|...|++..+.++
T Consensus 215 ~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 215 E-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred H-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 2 2333332 23344445566666666666666666666666655443
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.09 E-value=2e-07 Score=91.28 Aligned_cols=126 Identities=15% Similarity=0.031 Sum_probs=98.7
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCc-hHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHH
Q 046312 333 TFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPM-RIHYHTMADILARAGHLKEAYTFIMNMP--FQPNPIVLRALLSAS 409 (514)
Q Consensus 333 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~ 409 (514)
++..+...|...|++++|..++++..+. .|+ +..|..-.+.|-+.|++++|.+.++.+. ..-|..+-+-.+..+
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~h---tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~ 272 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEH---TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYL 272 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhc---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHH
Confidence 3455567788899999999999988864 676 7788888888999999999999998886 445667777778888
Q ss_pred HhcCCCCcchHHHHHHHHHHhcCCCCCc-------h--HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 046312 410 SIHDAKYQDGVGNEVRRRLLELEPRGSQ-------N--LVIVANKYAEVGMWEKVSNVRRFMKN 464 (514)
Q Consensus 410 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~-------~--~~~l~~~~~~~g~~~~A~~~~~~m~~ 464 (514)
.+.|+ +++|.+.+..+.+-+-+... . ....+.+|.+.|++..|.+.|..+..
T Consensus 273 LRa~~---~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 273 LRAGR---IEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHCCC---HHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 89999 99999999988765521111 1 23678999999999999988877654
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.08 E-value=5.5e-08 Score=84.23 Aligned_cols=387 Identities=11% Similarity=-0.007 Sum_probs=241.9
Q ss_pred HHHHHHHHhcccCCCCChHHHHHHHcccCCCC---CcccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHH-HH
Q 046312 61 QILKELVRFCTLSSSKNLTYARSILCNYVNDS---VPIPWNNLIRGYAWSDRPREAVWVFIDMKRRGIKPTEFTYPF-VL 136 (514)
Q Consensus 61 ~~~~~ll~~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~-ll 136 (514)
--+.+.+..+. +..++++|.+++.... .. +......|...|....++..|-+.|+++-.. .|...-|.. -.
T Consensus 11 Geftaviy~lI--~d~ry~DaI~~l~s~~-Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~A 85 (459)
T KOG4340|consen 11 GEFTAVVYRLI--RDARYADAIQLLGSEL-ERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQA 85 (459)
T ss_pred CchHHHHHHHH--HHhhHHHHHHHHHHHH-hcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHH
Confidence 33555666666 7888999999988765 33 3455667777888889999999999998774 454444432 24
Q ss_pred HHHhccCCchHHHHHHHHHHHhCCCCCcch--HHHHHHHHHcCCCHHHHHHHhhccC-CCChhhHHHHHHHHHhCCChhH
Q 046312 137 KACAEISGLNEGMQVQANVTKSGLDSDVYT--NNNLVRFYGSCRRKRDACKVFDDMC-ERSVVSWNVIITVCVENLWLGE 213 (514)
Q Consensus 137 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~ 213 (514)
..+-+.+.+..|+.+...|.+. ++... ...-.......+++..+..+.++.+ +.+..+.+.......+.|+++.
T Consensus 86 QSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEa 162 (459)
T KOG4340|consen 86 QSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEA 162 (459)
T ss_pred HHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHH
Confidence 5566788899999998877643 22111 1111123456789999999999997 4667777777777789999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCC-------------ch---------------
Q 046312 214 AVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVL-------------NC--------------- 265 (514)
Q Consensus 214 a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-------------~~--------------- 265 (514)
|++-|+...+-+.--....|+..+.. .+.|+.+.|.+...+++++|+.. |.
T Consensus 163 AvqkFqaAlqvsGyqpllAYniALaH-y~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~ 241 (459)
T KOG4340|consen 163 AVQKFQAALQVSGYQPLLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALV 241 (459)
T ss_pred HHHHHHHHHhhcCCCchhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHH
Confidence 99999998886444445667666644 46789999999999998887532 11
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCc-----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 046312 266 QLGTALIDMYAKCGAVGCARLLFSRMEE-----INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCA 340 (514)
Q Consensus 266 ~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 340 (514)
..+|.-...+.+.|+++.|.+.+..|.. .|++|...+.-.- ..+++.+..+-+.-+.+... -...||..++-.
T Consensus 242 eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLll 319 (459)
T KOG4340|consen 242 EAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETFANLLLL 319 (459)
T ss_pred HHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHHHHHHHH
Confidence 1122223345688999999999999874 4666655443222 23445555555555555432 456788889989
Q ss_pred HhccCcHHHHHHHHHHHHHhhCC-CCchHHHHHHHHHHHh-cCCHHHHHHHHHhCCCCCCHHHHHHHH--HHHHhcCCCC
Q 046312 341 CNHAGMVEDGYRYFHEMEHVHGI-KPMRIHYHTMADILAR-AGHLKEAYTFIMNMPFQPNPIVLRALL--SASSIHDAKY 416 (514)
Q Consensus 341 ~~~~~~~~~a~~~~~~~~~~~~~-~p~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~p~~~~~~~l~--~~~~~~~~~~ 416 (514)
||+..-++.|-.++.+-... .. -.+...|+ |++++.- .-..++|.+-++.+...-....-...+ .--...++
T Consensus 320 yCKNeyf~lAADvLAEn~~l-Tyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~d-- 395 (459)
T KOG4340|consen 320 YCKNEYFDLAADVLAENAHL-TYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRD-- 395 (459)
T ss_pred HhhhHHHhHHHHHHhhCcch-hHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--
Confidence 99998888888777653321 11 12333344 3444443 345677776665553000011111111 11122222
Q ss_pred cchHHHHHHH---HHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 046312 417 QDGVGNEVRR---RLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNVG 466 (514)
Q Consensus 417 ~~~~a~~~~~---~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 466 (514)
-...+.+++ ...++- ..+...-++.|.+..++..+.++|+.-.+..
T Consensus 396 -d~a~R~ai~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~SvefC 444 (459)
T KOG4340|consen 396 -DEAIRKAVNEYDETLEKY---LPVLMAQAKIYWNLEDYPMVEKIFRKSVEFC 444 (459)
T ss_pred -HHHHHHHHHHHHHHHHHH---HHHHHHHHHhhccccccHHHHHHHHHHHhhh
Confidence 122222222 222221 2245677888999999999999999876543
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.06 E-value=5.4e-08 Score=94.06 Aligned_cols=193 Identities=15% Similarity=0.110 Sum_probs=101.9
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHC-----C-CCCC-HHHHHHHHHHHhccCChHHHHHHHHHHHHh-----CC-CCc-hh
Q 046312 201 IITVCVENLWLGEAVGYFVKMKDL-----G-FEPD-ETTMLVVLSACTELGNLSLGKWVHLQLIER-----GT-VLN-CQ 266 (514)
Q Consensus 201 li~~~~~~~~~~~a~~~~~~m~~~-----~-~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~~-~~~-~~ 266 (514)
+...|...+++++|..+|+++... | ..|. ..++..|..+|.+.|++++|...++...+- |. .+. ..
T Consensus 247 ~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~ 326 (508)
T KOG1840|consen 247 LALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAA 326 (508)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHH
Confidence 334445555555555555554331 1 1111 123444444555555555555444443321 11 111 12
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCc--------CC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHC----CC--CC
Q 046312 267 LGTALIDMYAKCGAVGCARLLFSRMEE--------IN---VWTWSAMILGLAQHGYAEEALELFSNMKNS----SI--SP 329 (514)
Q Consensus 267 ~~~~li~~~~~~g~~~~A~~~~~~~~~--------~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~--~p 329 (514)
.++.+...++..+++++|..++....+ .+ ..+++.|...|...|++++|.+++++.+.. +. .+
T Consensus 327 ~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~ 406 (508)
T KOG1840|consen 327 QLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDY 406 (508)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcCh
Confidence 334444555555666666555554332 11 246667777777777777777777776542 11 12
Q ss_pred C-HHHHHHHHHHHhccCcHHHHHHHHHHHHH---hhCC-CCc-hHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 046312 330 N-YVTFLGVLCACNHAGMVEDGYRYFHEMEH---VHGI-KPM-RIHYHTMADILARAGHLKEAYTFIMNM 393 (514)
Q Consensus 330 ~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~-~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~ 393 (514)
. ...++.+...|.+.+....|.++|.+... .+|. .|+ ..+|..|...|.+.|+++.|.++.+..
T Consensus 407 ~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~ 476 (508)
T KOG1840|consen 407 GVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKV 476 (508)
T ss_pred hhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 2 34466667777777777777666665432 1222 233 446777778888888888887777665
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.06 E-value=4.4e-06 Score=80.34 Aligned_cols=413 Identities=10% Similarity=-0.028 Sum_probs=257.6
Q ss_pred cChhHHHHHHHHHHHhCCCCChHHHHHHHHhcccCCCCChHHHHHHHcccCC--CCCcccHHHHHHHHHhCCCchHHHHH
Q 046312 39 CSKKHLYQIHAQIQVSGLQNDAQILKELVRFCTLSSSKNLTYARSILCNYVN--DSVPIPWNNLIRGYAWSDRPREAVWV 116 (514)
Q Consensus 39 ~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~ 116 (514)
++.+++....+.-.+ +-..+.+.|+.+--.+. ...++++|.+.+..... +.|...|.-+--.=++.|+++.....
T Consensus 55 g~~~ea~~~vr~glr-~d~~S~vCwHv~gl~~R--~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~t 131 (700)
T KOG1156|consen 55 GKKEEAYELVRLGLR-NDLKSHVCWHVLGLLQR--SDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLET 131 (700)
T ss_pred cchHHHHHHHHHHhc-cCcccchhHHHHHHHHh--hhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHH
Confidence 455555444443333 22334577887777777 88899999999987642 33445555554444567888888888
Q ss_pred HHHHHHcCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCC-CCCcchHHHHH------HHHHcCCCHHHHHHHhhc
Q 046312 117 FIDMKRRGIKPTEFTYPFVLKACAEISGLNEGMQVQANVTKSGL-DSDVYTNNNLV------RFYGSCRRKRDACKVFDD 189 (514)
Q Consensus 117 ~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~li------~~~~~~~~~~~A~~~~~~ 189 (514)
.....+. .+-....|..+..+.--.|+...|..++++..+.-. .|+...+.... ....+.|.+++|.+.+..
T Consensus 132 r~~LLql-~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~ 210 (700)
T KOG1156|consen 132 RNQLLQL-RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLD 210 (700)
T ss_pred HHHHHHh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHh
Confidence 8877775 223345688888888889999999999999887652 45665554333 345677888999888876
Q ss_pred cCCC--Chhh-HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHH-HHhccCC-hHHHHHHHHHHHHhCCCCc
Q 046312 190 MCER--SVVS-WNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLS-ACTELGN-LSLGKWVHLQLIERGTVLN 264 (514)
Q Consensus 190 ~~~~--~~~~-~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~-~~~~~g~-~~~a~~~~~~~~~~~~~~~ 264 (514)
..+. |-.. -.+-...+.+.++.++|..++..+... .||..-|...+. ++.+..+ .+....+|....+.-..-.
T Consensus 211 ~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e 288 (700)
T KOG1156|consen 211 NEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHE 288 (700)
T ss_pred hhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccc
Confidence 6332 2222 234456788999999999999999987 577666655544 4433333 3333356655544311100
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCc-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHH----CC----------CCC
Q 046312 265 CQLGTALIDMYAKCGAVGCARLLFSRMEE-INVWTWSAMILGLAQHGYAEEALELFSNMKN----SS----------ISP 329 (514)
Q Consensus 265 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~g----------~~p 329 (514)
.... .=+.......-.+..-.++..+.+ .-+.++..+...|-.-...+-..++...+.. .| -+|
T Consensus 289 ~p~R-lplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~P 367 (700)
T KOG1156|consen 289 CPRR-LPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPP 367 (700)
T ss_pred cchh-ccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCc
Confidence 0000 001111111112222233333322 2233444444444333322222222222221 11 144
Q ss_pred CHHH--HHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCc-hHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHH
Q 046312 330 NYVT--FLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPM-RIHYHTMADILARAGHLKEAYTFIMNMP--FQPNPIVLRA 404 (514)
Q Consensus 330 ~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ 404 (514)
.... +..++..+-..|+++.|..+++.... -.|+ +..|..-.+.+...|++++|..++++.. ..||..+-.-
T Consensus 368 ttllWt~y~laqh~D~~g~~~~A~~yId~AId---HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsK 444 (700)
T KOG1156|consen 368 TTLLWTLYFLAQHYDKLGDYEVALEYIDLAID---HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSK 444 (700)
T ss_pred hHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc---cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHH
Confidence 4443 44566788899999999999999985 3777 5677777888999999999999999986 6677766666
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCc-------hHH--HHHHHHHhcCCHHHHHHHHHHHHh
Q 046312 405 LLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQ-------NLV--IVANKYAEVGMWEKVSNVRRFMKN 464 (514)
Q Consensus 405 l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~-------~~~--~l~~~~~~~g~~~~A~~~~~~m~~ 464 (514)
-..-..+.++ .++|.+++.++.+-+-+... .|. .=+.+|.+.|++..|.+=|..+..
T Consensus 445 cAKYmLrAn~---i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k 510 (700)
T KOG1156|consen 445 CAKYMLRANE---IEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEK 510 (700)
T ss_pred HHHHHHHccc---cHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHH
Confidence 6677778888 99999999999876642111 122 347788899888888876666543
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.9e-08 Score=83.09 Aligned_cols=163 Identities=16% Similarity=0.115 Sum_probs=116.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCc-hHHHHHHHHH
Q 046312 298 TWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPM-RIHYHTMADI 376 (514)
Q Consensus 298 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~ 376 (514)
+...|.-+|...|+...|..-+++.++.. +-+..++..+...|.+.|..+.|.+-|++... +.|+ ..+.|.....
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls---l~p~~GdVLNNYG~F 112 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALS---LAPNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHh---cCCCccchhhhhhHH
Confidence 34445666777777777777777777742 23355677777777777888888777777774 2443 5667777777
Q ss_pred HHhcCCHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCH
Q 046312 377 LARAGHLKEAYTFIMNMPFQPN----PIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMW 452 (514)
Q Consensus 377 ~~~~g~~~~A~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 452 (514)
+|..|++++|...|++....|+ ..+|..+.-+..+.|+ .+.++..+++..+.+|+.+.....+.....+.|++
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq---~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y 189 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQ---FDQAEEYLKRALELDPQFPPALLELARLHYKAGDY 189 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCC---chhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccc
Confidence 7777888888888877753332 4666677777777777 77788888888888887777777888888888888
Q ss_pred HHHHHHHHHHHhCCC
Q 046312 453 EKVSNVRRFMKNVGL 467 (514)
Q Consensus 453 ~~A~~~~~~m~~~~~ 467 (514)
-.|..+++....++.
T Consensus 190 ~~Ar~~~~~~~~~~~ 204 (250)
T COG3063 190 APARLYLERYQQRGG 204 (250)
T ss_pred hHHHHHHHHHHhccc
Confidence 888888877776655
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.03 E-value=7.9e-06 Score=72.90 Aligned_cols=406 Identities=11% Similarity=0.031 Sum_probs=239.1
Q ss_pred cChhHHHHHHHHHHHhCCCCChHHHHHHHHhcccCCCCChHHHHHHHcccCC--CCCcccHHHHHHHHHhCCCchHHHHH
Q 046312 39 CSKKHLYQIHAQIQVSGLQNDAQILKELVRFCTLSSSKNLTYARSILCNYVN--DSVPIPWNNLIRGYAWSDRPREAVWV 116 (514)
Q Consensus 39 ~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~ 116 (514)
.+...+..+.+.-...+-.- ....+..|..|. .+.|++++|...+..+.+ .++...|-.|...+.-.|.+.+|..+
T Consensus 36 rDytGAislLefk~~~~~EE-E~~~~lWia~C~-fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~ 113 (557)
T KOG3785|consen 36 RDYTGAISLLEFKLNLDREE-EDSLQLWIAHCY-FHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSI 113 (557)
T ss_pred ccchhHHHHHHHhhccchhh-hHHHHHHHHHHH-HhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHH
Confidence 45566666666554333221 224444454443 388999999988887653 34445566666666666788888777
Q ss_pred HHHHHHcCCCCCcc-hHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCHHHHHHHhhccCC--C
Q 046312 117 FIDMKRRGIKPTEF-TYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKRDACKVFDDMCE--R 193 (514)
Q Consensus 117 ~~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~ 193 (514)
-.+. |+.. .-..++...-+.++-++-..+.+.+.+. ..-..+|.+.....-.+++|.+++.++.. |
T Consensus 114 ~~ka------~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ 182 (557)
T KOG3785|consen 114 AEKA------PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQDNP 182 (557)
T ss_pred HhhC------CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCh
Confidence 5543 3333 3344455556677777777666665432 13334455665666688999999998844 3
Q ss_pred ChhhHHHH-HHHHHhCCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhc--cCChHHH------------HHHHHHHH
Q 046312 194 SVVSWNVI-ITVCVENLWLGEAVGYFVKMKDLGFEPDE-TTMLVVLSACTE--LGNLSLG------------KWVHLQLI 257 (514)
Q Consensus 194 ~~~~~~~l-i~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~t~~~ll~~~~~--~g~~~~a------------~~~~~~~~ 257 (514)
+-...|.. .-+|.+..-++-+.++++-.... .||. ...+.......+ .|+..+. ....+.+.
T Consensus 183 ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~ 260 (557)
T KOG3785|consen 183 EYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLC 260 (557)
T ss_pred hhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHH
Confidence 44444543 34677778888888888777665 3443 333333222222 1221111 11222222
Q ss_pred HhCC------------CC-----chhHHHHHHHHHHhcCCHHHHHHHHHhcCcCCHHHHHHHHHHHHHcC-------ChH
Q 046312 258 ERGT------------VL-----NCQLGTALIDMYAKCGAVGCARLLFSRMEEINVWTWSAMILGLAQHG-------YAE 313 (514)
Q Consensus 258 ~~~~------------~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~-------~~~ 313 (514)
++++ -| -+..-..|+-.|.+.+++.+|..+.+++....+.-|-.-.-.++..| ...
T Consensus 261 rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlK 340 (557)
T KOG3785|consen 261 RHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLK 340 (557)
T ss_pred HcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHH
Confidence 2211 01 11222345556889999999999998887655444432222233333 344
Q ss_pred HHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHh
Q 046312 314 EALELFSNMKNSSISPNYV-TFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMN 392 (514)
Q Consensus 314 ~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 392 (514)
-|.+.|+-.-+++..-|.. .-..+..++.-..++++++.+++.+..- =..-|...| .+..+++..|.+.+|.++|-+
T Consensus 341 iAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~-N~AQAk~atgny~eaEelf~~ 418 (557)
T KOG3785|consen 341 IAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNL-NLAQAKLATGNYVEAEELFIR 418 (557)
T ss_pred HHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhh-HHHHHHHHhcChHHHHHHHhh
Confidence 5666665554444333321 2334445555567788899988888763 233334333 478899999999999999988
Q ss_pred CC--CCCCHHHHHHHH-HHHHhcCCCCcchHHHHHHHHHHhcCCC-CCc-hHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 046312 393 MP--FQPNPIVLRALL-SASSIHDAKYQDGVGNEVRRRLLELEPR-GSQ-NLVIVANKYAEVGMWEKVSNVRRFMKNVGL 467 (514)
Q Consensus 393 ~~--~~p~~~~~~~l~-~~~~~~~~~~~~~~a~~~~~~~~~~~p~-~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 467 (514)
+. ...|..+|.+++ .+|.+++. -+-+++.+.+.+.. +.. .....++-|.+++.+--|-+.|+.+...+.
T Consensus 419 is~~~ikn~~~Y~s~LArCyi~nkk------P~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP 492 (557)
T KOG3785|consen 419 ISGPEIKNKILYKSMLARCYIRNKK------PQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDP 492 (557)
T ss_pred hcChhhhhhHHHHHHHHHHHHhcCC------chHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCC
Confidence 86 223556665554 55667777 55666777776633 222 233667888999999999999998876544
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=3.4e-07 Score=84.72 Aligned_cols=187 Identities=10% Similarity=-0.120 Sum_probs=90.1
Q ss_pred HHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCHHHHHHHhhccCC--C-ChhhHHHHHHHHHhC
Q 046312 132 YPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKRDACKVFDDMCE--R-SVVSWNVIITVCVEN 208 (514)
Q Consensus 132 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~ 208 (514)
|..+...+...|+.++|...|++..+.. +.+...|+.+...+...|++++|...|++..+ | +..+|..+..++...
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~ 145 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYG 145 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 4444445555566666666666555543 23445555566666666666666665555522 2 334555555555666
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHH--HH
Q 046312 209 LWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCA--RL 286 (514)
Q Consensus 209 ~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A--~~ 286 (514)
|++++|++.|++..+. .|+..........+...++.++|...+....... .++... ..+.. ...|+...+ .+
T Consensus 146 g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~-~~~~~~-~~~~~--~~lg~~~~~~~~~ 219 (296)
T PRK11189 146 GRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL-DKEQWG-WNIVE--FYLGKISEETLME 219 (296)
T ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-CccccH-HHHHH--HHccCCCHHHHHH
Confidence 6666666666665554 2322211111112233455666666654433222 111111 11222 222333222 21
Q ss_pred HHHhcCc-------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 046312 287 LFSRMEE-------INVWTWSAMILGLAQHGYAEEALELFSNMKNS 325 (514)
Q Consensus 287 ~~~~~~~-------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 325 (514)
.+....+ .....|..+...+.+.|++++|...|++..+.
T Consensus 220 ~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 220 RLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred HHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 1111111 12345666667777777777777777777654
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.2e-06 Score=85.77 Aligned_cols=123 Identities=11% Similarity=0.058 Sum_probs=92.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhc
Q 046312 372 TMADILARAGHLKEAYTFIMNMP--FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEV 449 (514)
Q Consensus 372 ~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 449 (514)
.....+.+.++.++|...+.+.. ..-....|......+...|. .++|.+.+..+..++|+++....+++.++.+.
T Consensus 655 laa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~---~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~ 731 (799)
T KOG4162|consen 655 LAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQ---LEEAKEAFLVALALDPDHVPSMTALAELLLEL 731 (799)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHh---hHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh
Confidence 34445556666666665555554 22234455555556667777 89999999999999999999999999999999
Q ss_pred CCHHHHHH--HHHHHHhCCCCCCCceeEEEECCeEEEEEecccCCcChHHHHHHHHHHH
Q 046312 450 GMWEKVSN--VRRFMKNVGLKKMKGMSWVELGGSIHRFYSGYDSQVELAGIYQILETLN 506 (514)
Q Consensus 450 g~~~~A~~--~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~ 506 (514)
|+..-|.. ++..+.+. +|..+-.| +.+..-+...|+.++|.+.|.--.
T Consensus 732 G~~~la~~~~~L~dalr~--dp~n~eaW-------~~LG~v~k~~Gd~~~Aaecf~aa~ 781 (799)
T KOG4162|consen 732 GSPRLAEKRSLLSDALRL--DPLNHEAW-------YYLGEVFKKLGDSKQAAECFQAAL 781 (799)
T ss_pred CCcchHHHHHHHHHHHhh--CCCCHHHH-------HHHHHHHHHccchHHHHHHHHHHH
Confidence 99888877 88888774 46677778 677777899999999999887543
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.3e-07 Score=82.07 Aligned_cols=241 Identities=13% Similarity=0.039 Sum_probs=121.9
Q ss_pred HHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---cCCHHHHHHHHHHHHHcCChHHH
Q 046312 239 ACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRME---EINVWTWSAMILGLAQHGYAEEA 315 (514)
Q Consensus 239 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a 315 (514)
.+...|+...|+.....+++.. +.+...|..-..+|...|++..|+.-++... ..+...+..+-..+...|+.+.+
T Consensus 164 s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~s 242 (504)
T KOG0624|consen 164 SASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENS 242 (504)
T ss_pred HHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHH
Confidence 3445566666666666666554 3356666666666667777666665554443 34555555555666666666666
Q ss_pred HHHHHHHHHCCCCCCHHH----HHHH---------HHHHhccCcHHHHHHHHHHHHHhhCCCCc-----hHHHHHHHHHH
Q 046312 316 LELFSNMKNSSISPNYVT----FLGV---------LCACNHAGMVEDGYRYFHEMEHVHGIKPM-----RIHYHTMADIL 377 (514)
Q Consensus 316 ~~~~~~m~~~g~~p~~~~----~~~l---------l~~~~~~~~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~ 377 (514)
+...++-++ +.||... |..+ +....+.++|.++..-.+...+. .|. ...+..+-.++
T Consensus 243 L~~iRECLK--ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~C~ 317 (504)
T KOG0624|consen 243 LKEIRECLK--LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN---EPEETMIRYNGFRVLCTCY 317 (504)
T ss_pred HHHHHHHHc--cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc---CCcccceeeeeeheeeecc
Confidence 666666654 3454322 1110 01112233444444444444332 222 11122333334
Q ss_pred HhcCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHH
Q 046312 378 ARAGHLKEAYTFIMNMP-FQPN-PIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKV 455 (514)
Q Consensus 378 ~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 455 (514)
...|++.+|++.-.++. +.|| +.++.--..+|..-.. ++.|..-++.+.+.++++..+-.. .+.|
T Consensus 318 ~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~---YD~AI~dye~A~e~n~sn~~~reG----------le~A 384 (504)
T KOG0624|consen 318 REDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEM---YDDAIHDYEKALELNESNTRAREG----------LERA 384 (504)
T ss_pred cccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHH---HHHHHHHHHHHHhcCcccHHHHHH----------HHHH
Confidence 44455555555544443 3332 4444444445554444 555555555555555544321111 2223
Q ss_pred HHHHHHHHhCCCCCCCceeEEEECCeEEEEEecccCCcChHHHHHHHHHHHHHhhhcCC
Q 046312 456 SNVRRFMKNVGLKKMKGMSWVELGGSIHRFYSGYDSQVELAGIYQILETLNLHMKVLNF 514 (514)
Q Consensus 456 ~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 514 (514)
.++.++...+. +.-|.|-.++-...++.+-|.+|...+.-.+|
T Consensus 385 krlkkqs~kRD----------------YYKILGVkRnAsKqEI~KAYRKlAqkWHPDNF 427 (504)
T KOG0624|consen 385 KRLKKQSGKRD----------------YYKILGVKRNASKQEITKAYRKLAQKWHPDNF 427 (504)
T ss_pred HHHHHHhccch----------------HHHHhhhcccccHHHHHHHHHHHHHhcCCccc
Confidence 33322222221 24456777888888899999999888765554
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.1e-07 Score=90.09 Aligned_cols=209 Identities=11% Similarity=0.142 Sum_probs=120.4
Q ss_pred HHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCChHHHH
Q 046312 237 LSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEEINVWTWSAMILGLAQHGYAEEAL 316 (514)
Q Consensus 237 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 316 (514)
+.+....+.|.+|..+++.+..... -..-|..+.+-|+..|+++.|+++|.+.- .++-.|..|.+.|+|+.|.
T Consensus 739 ieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da~ 811 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDAF 811 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHHH
Confidence 3444555667777777766665532 23345566667777777777777776543 3445566677777777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCCCC
Q 046312 317 ELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMPFQ 396 (514)
Q Consensus 317 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 396 (514)
++-.+.. |.......|-+-..-..+.|++.+|.++|-.+. .|+. -|.+|-+.|..+..+.+.++-.-.
T Consensus 812 kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~-----~p~~-----aiqmydk~~~~ddmirlv~k~h~d 879 (1636)
T KOG3616|consen 812 KLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG-----EPDK-----AIQMYDKHGLDDDMIRLVEKHHGD 879 (1636)
T ss_pred HHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc-----CchH-----HHHHHHhhCcchHHHHHHHHhChh
Confidence 6665443 333334445555555666677777766654432 3432 355666777777777666665411
Q ss_pred CCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCceeE
Q 046312 397 PNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNVGLKKMKGMSW 475 (514)
Q Consensus 397 p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 475 (514)
--..|...+..-+-..|+ +..|++-+-++ .-|.+-+++|...+.|++|.++-+.--..+..+...+.|
T Consensus 880 ~l~dt~~~f~~e~e~~g~---lkaae~~flea--------~d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flw 947 (1636)
T KOG3616|consen 880 HLHDTHKHFAKELEAEGD---LKAAEEHFLEA--------GDFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLW 947 (1636)
T ss_pred hhhHHHHHHHHHHHhccC---hhHHHHHHHhh--------hhHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHH
Confidence 122444455556666666 55554443322 235566777777777777777766444444444444555
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.98 E-value=7.3e-06 Score=74.62 Aligned_cols=265 Identities=8% Similarity=-0.074 Sum_probs=181.4
Q ss_pred CCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHH-HHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHH
Q 046312 191 CERSVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETT-MLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGT 269 (514)
Q Consensus 191 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t-~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 269 (514)
.+.|+.....+...+...|+.++|+..|++.... .|+..+ ...-.-.+.+.|+.+....+...+....- -+...|-
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~-~ta~~wf 304 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVK-YTASHWF 304 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhh-cchhhhh
Confidence 3457777888888888888888888888887653 343321 11122223567777777777776655431 1222333
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCcCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccC
Q 046312 270 ALIDMYAKCGAVGCARLLFSRMEEIN---VWTWSAMILGLAQHGYAEEALELFSNMKNSSISP-NYVTFLGVLCACNHAG 345 (514)
Q Consensus 270 ~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~ 345 (514)
.-.......++++.|+.+-++..+.+ +..+-.-...+...|+.++|.-.|+..+. +.| +...|..|+.+|.-.|
T Consensus 305 V~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~ 382 (564)
T KOG1174|consen 305 VHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQK 382 (564)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhc
Confidence 33344455678888888888776543 34443334567788999999999998876 344 5678999999999999
Q ss_pred cHHHHHHHHHHHHHhhCCCCchHHHHHHH-HHHH-hcCCHHHHHHHHHhCC-CCCCH-HHHHHHHHHHHhcCCCCcchHH
Q 046312 346 MVEDGYRYFHEMEHVHGIKPMRIHYHTMA-DILA-RAGHLKEAYTFIMNMP-FQPNP-IVLRALLSASSIHDAKYQDGVG 421 (514)
Q Consensus 346 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li-~~~~-~~g~~~~A~~~~~~~~-~~p~~-~~~~~l~~~~~~~~~~~~~~~a 421 (514)
++.+|...-+...+. +.-+..+...+. ..+. ...--++|.+++++.. .+|+- ...+.+...+...|. .+.+
T Consensus 383 ~~kEA~~~An~~~~~--~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~---~~D~ 457 (564)
T KOG1174|consen 383 RFKEANALANWTIRL--FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGP---TKDI 457 (564)
T ss_pred hHHHHHHHHHHHHHH--hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCc---cchH
Confidence 999888877776653 344444544432 2222 1223478888888875 67764 556667777888888 8889
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 046312 422 NEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNVG 466 (514)
Q Consensus 422 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 466 (514)
...++......|+ ......|++.+...+.+++|++.|......+
T Consensus 458 i~LLe~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 458 IKLLEKHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred HHHHHHHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 9999999988887 4578899999999999999999988765543
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.1e-06 Score=82.69 Aligned_cols=371 Identities=12% Similarity=0.074 Sum_probs=236.4
Q ss_pred CCCChHHHHHHHcccCC--CCCcccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcc-hHHHHHHHHhccCCchHHHH
Q 046312 74 SSKNLTYARSILCNYVN--DSVPIPWNNLIRGYAWSDRPREAVWVFIDMKRRGIKPTEF-TYPFVLKACAEISGLNEGMQ 150 (514)
Q Consensus 74 ~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~~a~~ 150 (514)
..|+++.|..+|-+... ++|-+.|..=..+|+..|++++|++=-.+-++ +.|+-. .|.-...++...|++++|..
T Consensus 14 s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~~~eA~~ 91 (539)
T KOG0548|consen 14 SSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGDYEEAIL 91 (539)
T ss_pred ccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhcccHHHHHH
Confidence 58999999999976532 45667788888899999999988877666555 456554 78888888888999999999
Q ss_pred HHHHHHHhCCCCCcchHHHHHHHHHcCCCHHHHHHHhhcc-----CC--C------ChhhHHHHHHHHHhC-------CC
Q 046312 151 VQANVTKSGLDSDVYTNNNLVRFYGSCRRKRDACKVFDDM-----CE--R------SVVSWNVIITVCVEN-------LW 210 (514)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~-----~~--~------~~~~~~~li~~~~~~-------~~ 210 (514)
.|.+-++.. +.|...++.+..++... . .+.+.|..- .. | ....|..++..+-+. .+
T Consensus 92 ay~~GL~~d-~~n~~L~~gl~~a~~~~--~-~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~ 167 (539)
T KOG0548|consen 92 AYSEGLEKD-PSNKQLKTGLAQAYLED--Y-AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLN 167 (539)
T ss_pred HHHHHhhcC-CchHHHHHhHHHhhhHH--H-HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccc
Confidence 998877764 34556667777666111 0 111111111 00 0 011233333222111 01
Q ss_pred hhHHHHHHHHHH--------HCC-------CCC----------------------CHHHHHHHHHHHhccCChHHHHHHH
Q 046312 211 LGEAVGYFVKMK--------DLG-------FEP----------------------DETTMLVVLSACTELGNLSLGKWVH 253 (514)
Q Consensus 211 ~~~a~~~~~~m~--------~~~-------~~p----------------------~~~t~~~ll~~~~~~g~~~~a~~~~ 253 (514)
.+...+....+. ..| ..| -..-...+.++..+..+++.+.+-+
T Consensus 168 d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y 247 (539)
T KOG0548|consen 168 DPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHY 247 (539)
T ss_pred cHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHH
Confidence 111111111110 000 111 1123567888888888999999988
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCcCCH---HHH-------HHHHHHHHHcCChHHHHHHHHHHH
Q 046312 254 LQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEEINV---WTW-------SAMILGLAQHGYAEEALELFSNMK 323 (514)
Q Consensus 254 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~-------~~li~~~~~~~~~~~a~~~~~~m~ 323 (514)
...++.. .+..-++....+|...|.+..+...-+...+..- .-| ..+..+|.+.++++.+...|.+..
T Consensus 248 ~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaL 325 (539)
T KOG0548|consen 248 AKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKAL 325 (539)
T ss_pred HHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHh
Confidence 8888776 4666777788889999988887777666554221 122 223446667788899999998877
Q ss_pred HCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchH-HHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHH
Q 046312 324 NSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRI-HYHTMADILARAGHLKEAYTFIMNMP-FQP-NPI 400 (514)
Q Consensus 324 ~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~ 400 (514)
.....|+..+ +....+++....+... -+.|... -...-...+.+.|++..|+..+.++. ..| |..
T Consensus 326 te~Rt~~~ls---------~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~ 393 (539)
T KOG0548|consen 326 TEHRTPDLLS---------KLKEAEKALKEAERKA---YINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDAR 393 (539)
T ss_pred hhhcCHHHHH---------HHHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhH
Confidence 6554544322 2333444444433333 2344421 12222556778888888888888875 334 667
Q ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 046312 401 VLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNVGL 467 (514)
Q Consensus 401 ~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 467 (514)
.|....-+|.+.+. +..|.+-.+..++++|+....|.--+.++....+|++|.+.|++-.+.+.
T Consensus 394 lYsNRAac~~kL~~---~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp 457 (539)
T KOG0548|consen 394 LYSNRAACYLKLGE---YPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDP 457 (539)
T ss_pred HHHHHHHHHHHHhh---HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 88888888888888 88888888888888888888888888888888888888888888877653
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.93 E-value=6.7e-07 Score=75.05 Aligned_cols=186 Identities=13% Similarity=-0.012 Sum_probs=91.6
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 046312 199 NVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKC 278 (514)
Q Consensus 199 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 278 (514)
..|.-.|...|+...|..-+++..+.. +-+..++..+...|.+.|+.+.|.+.|+..++.... +..+.|...-.+|..
T Consensus 39 lqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~q 116 (250)
T COG3063 39 LQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHhC
Confidence 344455556666666666666655542 223345555555555555555555555555554322 344455555555555
Q ss_pred CCHHHHHHHHHhcCc-C----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHH
Q 046312 279 GAVGCARLLFSRMEE-I----NVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRY 353 (514)
Q Consensus 279 g~~~~A~~~~~~~~~-~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~ 353 (514)
|++++|...|+.... | -..+|..+.-+..+.|+.+.|.+.|++.++.. +-...+...+.....+.|++..|..+
T Consensus 117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~~ 195 (250)
T COG3063 117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARLY 195 (250)
T ss_pred CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHHH
Confidence 555555555555443 2 12344445455555555555555555555432 11123344444444455555555555
Q ss_pred HHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHH
Q 046312 354 FHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTF 389 (514)
Q Consensus 354 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 389 (514)
++..... ..++..+.-..|+.--+.|+-+.+-+.
T Consensus 196 ~~~~~~~--~~~~A~sL~L~iriak~~gd~~~a~~Y 229 (250)
T COG3063 196 LERYQQR--GGAQAESLLLGIRIAKRLGDRAAAQRY 229 (250)
T ss_pred HHHHHhc--ccccHHHHHHHHHHHHHhccHHHHHHH
Confidence 5555442 224444444444444445554444433
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.93 E-value=5.1e-06 Score=79.72 Aligned_cols=296 Identities=8% Similarity=-0.085 Sum_probs=156.0
Q ss_pred ccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcch---HHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHH--
Q 046312 95 IPWNNLIRGYAWSDRPREAVWVFIDMKRRGIKPTEFT---YPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNN-- 169 (514)
Q Consensus 95 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~---~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-- 169 (514)
..|..+...+...|+++.+.+.+....+.. +++... .......+...|++++|.+++++..+.. +.+...+..
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~ 84 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQAL-AARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHL 84 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHh-ccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhH
Confidence 445556666666677777766666654431 222211 1122334556778888888888877663 223333331
Q ss_pred -HHHHHHcCCCHHHHHHHhhccCCC---ChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 046312 170 -LVRFYGSCRRKRDACKVFDDMCER---SVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGN 245 (514)
Q Consensus 170 -li~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~ 245 (514)
........+..+.+.+.++...+. .......+...+...|++++|...+++..+.. +.+...+..+...+...|+
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~ 163 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGR 163 (355)
T ss_pred HHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCC
Confidence 111112234555555555443222 22233445566777888888888888887763 3345566667777778888
Q ss_pred hHHHHHHHHHHHHhCCC-Cc--hhHHHHHHHHHHhcCCHHHHHHHHHhcCcCCH--HHH----H--HHHHHHHHcCChHH
Q 046312 246 LSLGKWVHLQLIERGTV-LN--CQLGTALIDMYAKCGAVGCARLLFSRMEEINV--WTW----S--AMILGLAQHGYAEE 314 (514)
Q Consensus 246 ~~~a~~~~~~~~~~~~~-~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~----~--~li~~~~~~~~~~~ 314 (514)
+++|...++........ ++ ...+..+...+...|++++|..++++...+.. ..+ + .++.-+...|....
T Consensus 164 ~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~ 243 (355)
T cd05804 164 FKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDV 243 (355)
T ss_pred HHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCCh
Confidence 88888888777665321 22 22344667777788888888888877653211 111 1 12222333343222
Q ss_pred HHHH--HHHHHHCCCC--CCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCC--------chHHHHHHHHHHHhcCC
Q 046312 315 ALEL--FSNMKNSSIS--PNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKP--------MRIHYHTMADILARAGH 382 (514)
Q Consensus 315 a~~~--~~~m~~~g~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p--------~~~~~~~li~~~~~~g~ 382 (514)
+.++ +......... .....-.....++...|+.+.|...++.+... ...+ .+.......-.+.+.|+
T Consensus 244 ~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~~~~~~~~l~A~~~~~~g~ 322 (355)
T cd05804 244 GDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGR-ASSADDNKQPARDVGLPLAEALYAFAEGN 322 (355)
T ss_pred HHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHH-HhccCchhhhHHhhhHHHHHHHHHHHcCC
Confidence 2222 1111111101 11111124455667778888888888777653 1110 01111122223456778
Q ss_pred HHHHHHHHHhCC
Q 046312 383 LKEAYTFIMNMP 394 (514)
Q Consensus 383 ~~~A~~~~~~~~ 394 (514)
.++|.+.+....
T Consensus 323 ~~~A~~~L~~al 334 (355)
T cd05804 323 YATALELLGPVR 334 (355)
T ss_pred HHHHHHHHHHHH
Confidence 888877776653
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.89 E-value=8.1e-06 Score=72.83 Aligned_cols=428 Identities=11% Similarity=0.019 Sum_probs=230.9
Q ss_pred ChhHHHHHHHHHHHhCCCCChHHHHHHHHhcccCCCCChHHHHHHHcccCCCCCcccHHHHHHHHHhCCCchHHHHHHHH
Q 046312 40 SKKHLYQIHAQIQVSGLQNDAQILKELVRFCTLSSSKNLTYARSILCNYVNDSVPIPWNNLIRGYAWSDRPREAVWVFID 119 (514)
Q Consensus 40 ~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 119 (514)
+-+++...+..+.... .++..++-.|...+- -.|.+.+|..+-.+.+ .++..-..|+..-.+.|+-++-+.+-+.
T Consensus 72 dY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~F--yLg~Y~eA~~~~~ka~--k~pL~~RLlfhlahklndEk~~~~fh~~ 146 (557)
T KOG3785|consen 72 DYEEALNVYTFLMNKD-DAPAELGVNLACCKF--YLGQYIEAKSIAEKAP--KTPLCIRLLFHLAHKLNDEKRILTFHSS 146 (557)
T ss_pred cHHHHHHHHHHHhccC-CCCcccchhHHHHHH--HHHHHHHHHHHHhhCC--CChHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 3444444555444432 455555555554444 4689999999888876 3443334444444555554444444333
Q ss_pred HHHcCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHH-HHHcCCCHHHHHHHhhcc---CCCCh
Q 046312 120 MKRRGIKPTEFTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVR-FYGSCRRKRDACKVFDDM---CERSV 195 (514)
Q Consensus 120 m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~-~~~~~~~~~~A~~~~~~~---~~~~~ 195 (514)
+... .+.-.++....-..-.+.+|+.++...... .|+-...|.-+. +|.+..-++-+.++++-. ...++
T Consensus 147 LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdSt 219 (557)
T KOG3785|consen 147 LQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDST 219 (557)
T ss_pred Hhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcH
Confidence 3221 111222333333333455556665555443 222222222222 233444444443333322 11122
Q ss_pred hhHHHHHHH------------------------------HHhC-----CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 046312 196 VSWNVIITV------------------------------CVEN-----LWLGEAVGYFVKMKDLGFEPDETTMLVVLSAC 240 (514)
Q Consensus 196 ~~~~~li~~------------------------------~~~~-----~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~ 240 (514)
.+-|..... .++. .+-+.|++++-.+.+. .|. .-..++-.|
T Consensus 220 iA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~--IPE--ARlNL~iYy 295 (557)
T KOG3785|consen 220 IAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKH--IPE--ARLNLIIYY 295 (557)
T ss_pred HHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhh--ChH--hhhhheeee
Confidence 222222211 1221 2334555555444432 222 233455567
Q ss_pred hccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC-------CHHHHHHHHHhcCc-----CCHHHHHHHHHHHHH
Q 046312 241 TELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCG-------AVGCARLLFSRMEE-----INVWTWSAMILGLAQ 308 (514)
Q Consensus 241 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-------~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~ 308 (514)
.+.+++.+|..+.+++.- ..|-..+...+ .++..| ...-|.+.|.-+.+ ..+.--.++.+.+.-
T Consensus 296 L~q~dVqeA~~L~Kdl~P--ttP~EyilKgv--v~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL 371 (557)
T KOG3785|consen 296 LNQNDVQEAISLCKDLDP--TTPYEYILKGV--VFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFL 371 (557)
T ss_pred cccccHHHHHHHHhhcCC--CChHHHHHHHH--HHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHH
Confidence 888999999888766521 11222222222 233333 34456666665543 122233456666677
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHH-HHHHHHHhcCCHHHHH
Q 046312 309 HGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYH-TMADILARAGHLKEAY 387 (514)
Q Consensus 309 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~-~li~~~~~~g~~~~A~ 387 (514)
..++++++-++..+..--..-|...| .+.++++..|.+.+|+++|-.+... .+ .|..+|. .|.++|.+.|+++.|.
T Consensus 372 ~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~-~i-kn~~~Y~s~LArCyi~nkkP~lAW 448 (557)
T KOG3785|consen 372 SFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGP-EI-KNKILYKSMLARCYIRNKKPQLAW 448 (557)
T ss_pred HHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcCh-hh-hhhHHHHHHHHHHHHhcCCchHHH
Confidence 77899999988887764333344444 4778999999999999999888642 23 3455555 5678999999999999
Q ss_pred HHHHhCCCCCCHHHHHHH-HHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 046312 388 TFIMNMPFQPNPIVLRAL-LSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNVG 466 (514)
Q Consensus 388 ~~~~~~~~~p~~~~~~~l-~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 466 (514)
+++-++..+.+..+.-.+ .+-|.+.++ +=-+.++++.+..++|. +..|. |+-....-+|+.+....
T Consensus 449 ~~~lk~~t~~e~fsLLqlIAn~CYk~~e---FyyaaKAFd~lE~lDP~-pEnWe---------GKRGACaG~f~~l~~~~ 515 (557)
T KOG3785|consen 449 DMMLKTNTPSERFSLLQLIANDCYKANE---FYYAAKAFDELEILDPT-PENWE---------GKRGACAGLFRQLANHK 515 (557)
T ss_pred HHHHhcCCchhHHHHHHHHHHHHHHHHH---HHHHHHhhhHHHccCCC-ccccC---------CccchHHHHHHHHHcCC
Confidence 999999754455554444 466888888 88899999999999986 33332 44445556666666554
Q ss_pred CCCCCceeEEEECCeEEEEEecccCCcChHHHHHHHHHHHHHhhh
Q 046312 467 LKKMKGMSWVELGGSIHRFYSGYDSQVELAGIYQILETLNLHMKV 511 (514)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~ 511 (514)
..|.|.... .+.+.-....+ -.++.-+++-|+...++
T Consensus 516 ~~~~p~~~~-------rEVvhllr~~~-nsq~E~mikvvrkwa~~ 552 (557)
T KOG3785|consen 516 TDPIPISQM-------REVVHLLRMKP-NSQCEFMIKVVRKWAET 552 (557)
T ss_pred CCCCchhHH-------HHHHHHHHhCC-CchHHHHHHHHHHHHHh
Confidence 444443322 12222223333 23355556555554443
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.87 E-value=8.2e-08 Score=87.51 Aligned_cols=251 Identities=11% Similarity=0.019 Sum_probs=158.9
Q ss_pred HHHHcCCCHHHHHHHhhcc--CC-CChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHH
Q 046312 172 RFYGSCRRKRDACKVFDDM--CE-RSVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSL 248 (514)
Q Consensus 172 ~~~~~~~~~~~A~~~~~~~--~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~ 248 (514)
+-+.-.|.+..+..-.+.- .+ .+......+.+++...|+++.++ .+..... .|.......+...+...++-+.
T Consensus 9 rn~fy~G~Y~~~i~e~~~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~ 84 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEASLKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKES 84 (290)
T ss_dssp HHHHCTT-HHHHCHHHHCHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHC
T ss_pred HHHHHhhhHHHHHHHhhccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHH
Confidence 3455678888887544411 11 12334556678888888877654 3333333 6666666666655554444444
Q ss_pred HHHHHHHHHHhCCC-CchhHHHHHHHHHHhcCCHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 046312 249 GKWVHLQLIERGTV-LNCQLGTALIDMYAKCGAVGCARLLFSRMEEINVWTWSAMILGLAQHGYAEEALELFSNMKNSSI 327 (514)
Q Consensus 249 a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 327 (514)
+..-+++....... .+..+.......+...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+.
T Consensus 85 ~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~-- 160 (290)
T PF04733_consen 85 ALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI-- 160 (290)
T ss_dssp HHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--
Confidence 44444433333322 23333344445667789999998888776 56677777888899999999999999998864
Q ss_pred CCCHHHHHHHHHHHhc----cCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHH
Q 046312 328 SPNYVTFLGVLCACNH----AGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP-FQP-NPIV 401 (514)
Q Consensus 328 ~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~ 401 (514)
..| .+...+..++.. ...+..|..+|+++.+ ...+++.+.+.+..+....|++++|.+++.+.. ..| +..+
T Consensus 161 ~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~ 237 (290)
T PF04733_consen 161 DED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDT 237 (290)
T ss_dssp SCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHH
T ss_pred CCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHH
Confidence 233 444445554433 3468889999999876 456777888888888889999999999888864 333 4566
Q ss_pred HHHHHHHHHhcCCCCcc-hHHHHHHHHHHhcCCCCC
Q 046312 402 LRALLSASSIHDAKYQD-GVGNEVRRRLLELEPRGS 436 (514)
Q Consensus 402 ~~~l~~~~~~~~~~~~~-~~a~~~~~~~~~~~p~~~ 436 (514)
...++......|+ . +.+.+.+..+....|+.+
T Consensus 238 LaNliv~~~~~gk---~~~~~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 238 LANLIVCSLHLGK---PTEAAERYLSQLKQSNPNHP 270 (290)
T ss_dssp HHHHHHHHHHTT----TCHHHHHHHHHCHHHTTTSH
T ss_pred HHHHHHHHHHhCC---ChhHHHHHHHHHHHhCCCCh
Confidence 6667777777777 4 667788888888888754
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.86 E-value=4.2e-05 Score=73.04 Aligned_cols=382 Identities=9% Similarity=0.008 Sum_probs=223.4
Q ss_pred HHHHhcccCCCCChHHHHHHHcccCC--CCCcccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHhcc
Q 046312 65 ELVRFCTLSSSKNLTYARSILCNYVN--DSVPIPWNNLIRGYAWSDRPREAVWVFIDMKRRGIKPTEFTYPFVLKACAEI 142 (514)
Q Consensus 65 ~ll~~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 142 (514)
.-++.+. +.|++++|....+++.. +.+...+..=+-++.+.+++++|+.+.+.-.. ...+..-+.--..+.-+.
T Consensus 17 t~ln~~~--~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~--~~~~~~~~fEKAYc~Yrl 92 (652)
T KOG2376|consen 17 TDLNRHG--KNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGA--LLVINSFFFEKAYCEYRL 92 (652)
T ss_pred HHHHHhc--cchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch--hhhcchhhHHHHHHHHHc
Confidence 3456667 89999999999888763 23445666667778889999999966554221 111111111223344577
Q ss_pred CCchHHHHHHHHHHHhCCCCC-cchHHHHHHHHHcCCCHHHHHHHhhccCCCChhhHHHHHHHHHhCCChhHHHHHHHHH
Q 046312 143 SGLNEGMQVQANVTKSGLDSD-VYTNNNLVRFYGSCRRKRDACKVFDDMCERSVVSWNVIITVCVENLWLGEAVGYFVKM 221 (514)
Q Consensus 143 g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 221 (514)
+..++|+..++ |..++ ..+...-...+.+.|++++|..+|+.+.+.+...+..-+.+-+-.- ..+... ..+
T Consensus 93 nk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~--~a~l~~-~~~ 164 (652)
T KOG2376|consen 93 NKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAV--AAALQV-QLL 164 (652)
T ss_pred ccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHH--HHhhhH-HHH
Confidence 89999999887 33333 3366666778899999999999999997776666655554322111 111111 123
Q ss_pred HHCCCCCCHHHHHHHHH---HHhccCChHHHHHHHHHHHHhC-------CCCch-------hHHHHHHHHHHhcCCHHHH
Q 046312 222 KDLGFEPDETTMLVVLS---ACTELGNLSLGKWVHLQLIERG-------TVLNC-------QLGTALIDMYAKCGAVGCA 284 (514)
Q Consensus 222 ~~~~~~p~~~t~~~ll~---~~~~~g~~~~a~~~~~~~~~~~-------~~~~~-------~~~~~li~~~~~~g~~~~A 284 (514)
......| ..+|..+.+ .+...|++.+|+++++...+.+ -.-+. .+---+.-.+-..|+.++|
T Consensus 165 q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea 243 (652)
T KOG2376|consen 165 QSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEA 243 (652)
T ss_pred HhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 3333344 335544443 4557899999999999884321 01011 1122344567789999999
Q ss_pred HHHHHhcCc---CCH----HHHHHHHHHHH---------------------------------------------HcCCh
Q 046312 285 RLLFSRMEE---INV----WTWSAMILGLA---------------------------------------------QHGYA 312 (514)
Q Consensus 285 ~~~~~~~~~---~~~----~~~~~li~~~~---------------------------------------------~~~~~ 312 (514)
..++....+ +|. +.-|.++..-. -.+..
T Consensus 244 ~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~ 323 (652)
T KOG2376|consen 244 SSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKM 323 (652)
T ss_pred HHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 999987763 111 11111111000 00111
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc--cCcHHHHHHHHHHHHHhhCCCCc-hHHHHHHHHHHHhcCCHHHHHHH
Q 046312 313 EEALELFSNMKNSSISPNYVTFLGVLCACNH--AGMVEDGYRYFHEMEHVHGIKPM-RIHYHTMADILARAGHLKEAYTF 389 (514)
Q Consensus 313 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~ 389 (514)
+.+.++-... .+..|. ..+..++..+.+ ......+..++....+. .+-+ ..+.-..+......|+++.|.++
T Consensus 324 ~q~r~~~a~l--p~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~i 398 (652)
T KOG2376|consen 324 DQVRELSASL--PGMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALEI 398 (652)
T ss_pred HHHHHHHHhC--CccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHHH
Confidence 1111111100 122233 334444443322 22467777888777763 2222 44555667778899999999999
Q ss_pred HH--------hCC-CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcC----CCCC---chHHHHHHHHHhcCCHH
Q 046312 390 IM--------NMP-FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELE----PRGS---QNLVIVANKYAEVGMWE 453 (514)
Q Consensus 390 ~~--------~~~-~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~----p~~~---~~~~~l~~~~~~~g~~~ 453 (514)
+. .+. +.-.+.+...++.-+.+.++ .+.+..++..+..-- +... ..+..++..-.+.|+-+
T Consensus 399 l~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~---~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ 475 (652)
T KOG2376|consen 399 LSLFLESWKSSILEAKHLPGTVGAIVALYYKIKD---NDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEE 475 (652)
T ss_pred HHHHhhhhhhhhhhhccChhHHHHHHHHHHhccC---CccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchH
Confidence 98 444 33344555567777788888 777888887775532 2221 23334555556789999
Q ss_pred HHHHHHHHHHhCCC
Q 046312 454 KVSNVRRFMKNVGL 467 (514)
Q Consensus 454 ~A~~~~~~m~~~~~ 467 (514)
+|...++++...+.
T Consensus 476 ea~s~leel~k~n~ 489 (652)
T KOG2376|consen 476 EASSLLEELVKFNP 489 (652)
T ss_pred HHHHHHHHHHHhCC
Confidence 99999999987543
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.2e-05 Score=77.12 Aligned_cols=188 Identities=9% Similarity=-0.031 Sum_probs=88.2
Q ss_pred hHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcch---HHHHHHHHHcCCCHHHHHHHhhccC---CCChhhHHHHHHH
Q 046312 131 TYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYT---NNNLVRFYGSCRRKRDACKVFDDMC---ERSVVSWNVIITV 204 (514)
Q Consensus 131 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~---~~~li~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~ 204 (514)
.|..+...+...|+.+.+.+.+....+.. +++... .......+...|++++|.+++++.. +.+...+.. ...
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~ 85 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQAL-AARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLG 85 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHh-ccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHH
Confidence 45555555566666777666665554432 122111 1112233455666666666666552 122223331 111
Q ss_pred HHh----CCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 046312 205 CVE----NLWLGEAVGYFVKMKDLGFEPDE-TTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCG 279 (514)
Q Consensus 205 ~~~----~~~~~~a~~~~~~m~~~~~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 279 (514)
+.. .+..+.+.+.+.. .....|+. .....+...+...|++++|...+++..+... .+...+..+...|...|
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p-~~~~~~~~la~i~~~~g 162 (355)
T cd05804 86 AFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNP-DDAWAVHAVAHVLEMQG 162 (355)
T ss_pred HHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcC
Confidence 222 2333333333332 11112222 2333344455566666666666666665542 23444555555566666
Q ss_pred CHHHHHHHHHhcCc-----CCH--HHHHHHHHHHHHcCChHHHHHHHHHHH
Q 046312 280 AVGCARLLFSRMEE-----INV--WTWSAMILGLAQHGYAEEALELFSNMK 323 (514)
Q Consensus 280 ~~~~A~~~~~~~~~-----~~~--~~~~~li~~~~~~~~~~~a~~~~~~m~ 323 (514)
++++|..++++..+ ++. ..|..+...+...|++++|..++++..
T Consensus 163 ~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 163 RFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred CHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 66666666555443 111 123344555555566666666665554
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.1e-07 Score=84.90 Aligned_cols=218 Identities=9% Similarity=0.002 Sum_probs=94.1
Q ss_pred HHHHHHHHcCCCHHHHHHHhhccCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCh
Q 046312 168 NNLVRFYGSCRRKRDACKVFDDMCERSVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEP-DETTMLVVLSACTELGNL 246 (514)
Q Consensus 168 ~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~g~~ 246 (514)
..+.+++...|+++.+..-...-..|.......+...+...++-+.++.-+++....+..+ +..........+...|++
T Consensus 39 ~~~~Rs~iAlg~~~~vl~ei~~~~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~ 118 (290)
T PF04733_consen 39 FYQYRSYIALGQYDSVLSEIKKSSSPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDY 118 (290)
T ss_dssp HHHHHHHHHTT-HHHHHHHS-TTSSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHH
T ss_pred HHHHHHHHHcCChhHHHHHhccCCChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCH
Confidence 3344555555655554444433333444444333333222223333333333322222121 112222222334455566
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCcCC-HHHHHHHHHHHH----HcCChHHHHHHHHH
Q 046312 247 SLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEEIN-VWTWSAMILGLA----QHGYAEEALELFSN 321 (514)
Q Consensus 247 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~----~~~~~~~a~~~~~~ 321 (514)
++|.++++.. .+.......+..|.+.++++.|.+.++.|.+.+ ..+...+..++. -.+.+.+|..+|++
T Consensus 119 ~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~E 192 (290)
T PF04733_consen 119 EEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEE 192 (290)
T ss_dssp HHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHH
T ss_pred HHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 6655555431 234444455556666666666666666655421 122222322222 12345566666666
Q ss_pred HHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCH-HHHHHHHHhCC
Q 046312 322 MKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHL-KEAYTFIMNMP 394 (514)
Q Consensus 322 m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~~~ 394 (514)
+.+. ..++..+.+.+..+....|++++|..++.+.... -+-+..+...++.+....|+. +.+.+.+.++.
T Consensus 193 l~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~--~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~ 263 (290)
T PF04733_consen 193 LSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEK--DPNDPDTLANLIVCSLHLGKPTEAAERYLSQLK 263 (290)
T ss_dssp HHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC---CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCH
T ss_pred HHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--ccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 5443 3455555555555566666666666665555432 122344444445544455554 44555555554
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.6e-05 Score=78.45 Aligned_cols=356 Identities=14% Similarity=0.091 Sum_probs=219.7
Q ss_pred ChHHHHHHHH--hcccCCCCChHHHHHHHcccCCCCCcccHHHHHHHHHhCCCchHHHHHHHHHHHc-C-------C-CC
Q 046312 59 DAQILKELVR--FCTLSSSKNLTYARSILCNYVNDSVPIPWNNLIRGYAWSDRPREAVWVFIDMKRR-G-------I-KP 127 (514)
Q Consensus 59 ~~~~~~~ll~--~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~-------~-~p 127 (514)
|..+-..++. +|. .-|+.+.|.+-+.-+. +-..|..+.+.|.+.++.+-|.-.+-.|... | . .|
T Consensus 725 d~~TRkaml~FSfyv--tiG~MD~AfksI~~Ik---S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~ 799 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYV--TIGSMDAAFKSIQFIK---SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNG 799 (1416)
T ss_pred CHHHHHhhhceeEEE--EeccHHHHHHHHHHHh---hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCC
Confidence 5677777776 555 8999999999888776 4567999999999999999988888777542 2 1 12
Q ss_pred CcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCHHHHHHHhhccCCCC-hhhHHHHHHHHH
Q 046312 128 TEFTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKRDACKVFDDMCERS-VVSWNVIITVCV 206 (514)
Q Consensus 128 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~li~~~~ 206 (514)
+ .+-..+.-.....|.+++|+.++++-.+. ..|=..|-..|.+++|.++.+.-..-. ..||.....-+-
T Consensus 800 ~-e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Le 869 (1416)
T KOG3617|consen 800 E-EDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLE 869 (1416)
T ss_pred c-chhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHH
Confidence 2 33333344456789999999999987754 335566788899999999876542211 235666666666
Q ss_pred hCCChhHHHHHHHHH----------HHCC---------CCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhH
Q 046312 207 ENLWLGEAVGYFVKM----------KDLG---------FEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQL 267 (514)
Q Consensus 207 ~~~~~~~a~~~~~~m----------~~~~---------~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 267 (514)
..++.+.|++.|++. .... -.-|...|.--...+-..|+.|.|..+|+...+
T Consensus 870 ar~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D--------- 940 (1416)
T KOG3617|consen 870 ARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD--------- 940 (1416)
T ss_pred hhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------
Confidence 778888888888763 1111 011223333333344456666777666666544
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc---
Q 046312 268 GTALIDMYAKCGAVGCARLLFSRMEEINVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHA--- 344 (514)
Q Consensus 268 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~--- 344 (514)
|-++++..|-.|+.++|-++-++- .|......+.+.|-..|++.+|...|.+.+. |...|+.|-..
T Consensus 941 ~fs~VrI~C~qGk~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKEnd~~ 1009 (1416)
T KOG3617|consen 941 YFSMVRIKCIQGKTDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRLCKENDMK 1009 (1416)
T ss_pred hhhheeeEeeccCchHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHhcCHH
Confidence 335556666667777776665543 3555666778888888888888888877653 23333333222
Q ss_pred ------------CcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhC-------------CCCCCH
Q 046312 345 ------------GMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNM-------------PFQPNP 399 (514)
Q Consensus 345 ------------~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-------------~~~p~~ 399 (514)
.+.-.|-++|++.- .. +..-+..|-+.|.+.+|+++--+- ....|+
T Consensus 1010 d~L~nlal~s~~~d~v~aArYyEe~g----~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp 1080 (1416)
T KOG3617|consen 1010 DRLANLALMSGGSDLVSAARYYEELG----GY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDP 1080 (1416)
T ss_pred HHHHHHHhhcCchhHHHHHHHHHHcc----hh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCH
Confidence 22333334444332 11 122334466777777776653221 122355
Q ss_pred HHHHHHHHHHHhcCCCCcchHHHHHHHHHHhc----------------------CCCC---------CchHHHHHHHHHh
Q 046312 400 IVLRALLSASSIHDAKYQDGVGNEVRRRLLEL----------------------EPRG---------SQNLVIVANKYAE 448 (514)
Q Consensus 400 ~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~----------------------~p~~---------~~~~~~l~~~~~~ 448 (514)
...+....-+..+.+ +++|..++-.+.+. -|.. ...+..+++.|.+
T Consensus 1081 ~ll~RcadFF~~~~q---yekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~q 1157 (1416)
T KOG3617|consen 1081 KLLRRCADFFENNQQ---YEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQ 1157 (1416)
T ss_pred HHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHh
Confidence 555555555666666 66666655544332 1211 1245688999999
Q ss_pred cCCHHHHHHHHHH
Q 046312 449 VGMWEKVSNVRRF 461 (514)
Q Consensus 449 ~g~~~~A~~~~~~ 461 (514)
+|.+..|.+-|-+
T Consensus 1158 QG~Yh~AtKKfTQ 1170 (1416)
T KOG3617|consen 1158 QGAYHAATKKFTQ 1170 (1416)
T ss_pred ccchHHHHHHHhh
Confidence 9998888766544
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.5e-05 Score=86.60 Aligned_cols=325 Identities=11% Similarity=-0.038 Sum_probs=206.2
Q ss_pred HhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCHHHHHHHhhccC----CC----C----hhhHHHHHHHHH
Q 046312 139 CAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKRDACKVFDDMC----ER----S----VVSWNVIITVCV 206 (514)
Q Consensus 139 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~----~~----~----~~~~~~li~~~~ 206 (514)
....|+++.+...++.+.......+..........+...|++++|..+++... .. + ......+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 33456666666665554221112233333445556678899999888887651 11 1 111222334566
Q ss_pred hCCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCChHHHHHHHHHHHHhCC-----CCchhHHHHHHHHHHh
Q 046312 207 ENLWLGEAVGYFVKMKDLGFEPDE----TTMLVVLSACTELGNLSLGKWVHLQLIERGT-----VLNCQLGTALIDMYAK 277 (514)
Q Consensus 207 ~~~~~~~a~~~~~~m~~~~~~p~~----~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~~~li~~~~~ 277 (514)
..|++++|...+++....-...+. .....+...+...|++++|...+++.....- .........+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 789999999999988763111221 2344555667789999999999988765421 1112345566778889
Q ss_pred cCCHHHHHHHHHhcCc-------C----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHC--CCCCC--HHHHHHHHHHHh
Q 046312 278 CGAVGCARLLFSRMEE-------I----NVWTWSAMILGLAQHGYAEEALELFSNMKNS--SISPN--YVTFLGVLCACN 342 (514)
Q Consensus 278 ~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~p~--~~~~~~ll~~~~ 342 (514)
.|+++.|...+++..+ + ....+..+...+...|++++|...+.+.... ...+. ...+..+.....
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 9999999998877653 1 1223444556677789999999999887653 11122 333445566778
Q ss_pred ccCcHHHHHHHHHHHHHhhCCCCchHHH-----HHHHHHHHhcCCHHHHHHHHHhCCC-C-CCH----HHHHHHHHHHHh
Q 046312 343 HAGMVEDGYRYFHEMEHVHGIKPMRIHY-----HTMADILARAGHLKEAYTFIMNMPF-Q-PNP----IVLRALLSASSI 411 (514)
Q Consensus 343 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~-----~~li~~~~~~g~~~~A~~~~~~~~~-~-p~~----~~~~~l~~~~~~ 411 (514)
..|+.+.|...++..............+ ...+..+...|+.+.|..++..... . ... ..+..+..++..
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 703 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL 703 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH
Confidence 8999999999998886531111111111 1122445568999999999877651 1 111 113456677888
Q ss_pred cCCCCcchHHHHHHHHHHhcCC------CCCchHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 046312 412 HDAKYQDGVGNEVRRRLLELEP------RGSQNLVIVANKYAEVGMWEKVSNVRRFMKNVG 466 (514)
Q Consensus 412 ~~~~~~~~~a~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 466 (514)
.|+ .++|...++.+..... ....+...++.++.+.|+.++|...+.+..+..
T Consensus 704 ~g~---~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 704 LGQ---FDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred cCC---HHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 899 8999888888876531 112356688999999999999999999987654
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.8e-06 Score=75.11 Aligned_cols=311 Identities=13% Similarity=0.075 Sum_probs=171.2
Q ss_pred CcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCHHHHHHHhhccCC--CChhhHHH-HHHH
Q 046312 128 TEFTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKRDACKVFDDMCE--RSVVSWNV-IITV 204 (514)
Q Consensus 128 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~-li~~ 204 (514)
-..-+.+++..+.+..+++.|++++..-.+.. +.+....+.|..+|....++..|-..++++.. |...-|.. -...
T Consensus 9 ~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQS 87 (459)
T KOG4340|consen 9 PEGEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQS 87 (459)
T ss_pred CCCchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHH
Confidence 33446667777777777777777776665553 22555566677777777777777777777733 33333322 2344
Q ss_pred HHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH--hccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHH
Q 046312 205 CVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSAC--TELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVG 282 (514)
Q Consensus 205 ~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 282 (514)
+-+.+.+..|+.+...|.+. |+...-..-+.+. ...+++..+..++++.-..| +..+.+.......+.|+++
T Consensus 88 LY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyE 161 (459)
T KOG4340|consen 88 LYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYE 161 (459)
T ss_pred HHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHH
Confidence 55667777777777666542 2222222222221 23455555555555543222 2233333333445566666
Q ss_pred HHHHHHHhcCc----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH-HH---HHHHHHhccCcHHHHHHHH
Q 046312 283 CARLLFSRMEE----INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVT-FL---GVLCACNHAGMVEDGYRYF 354 (514)
Q Consensus 283 ~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~-~~---~ll~~~~~~~~~~~a~~~~ 354 (514)
.|.+-|+...+ .....|+..+ +..+.|+++.|+++..++++.|++-.+.. .. -.+.+- ..|+. ..+.
T Consensus 162 aAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvr-svgNt---~~lh 236 (459)
T KOG4340|consen 162 AAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVR-SVGNT---LVLH 236 (459)
T ss_pred HHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchh-cccch---HHHH
Confidence 66666665554 2233444333 23344556666666666666554322110 00 000000 00000 0000
Q ss_pred HHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC----CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHh
Q 046312 355 HEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP----FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLE 430 (514)
Q Consensus 355 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~ 430 (514)
.. .=+..+|.-...+.+.|+.+.|.+-+-+|+ ...|++|...+.-.- ..++ ...+.+-+..+.+
T Consensus 237 ~S--------al~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~---p~~g~~KLqFLL~ 304 (459)
T KOG4340|consen 237 QS--------ALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDAR---PTEGFEKLQFLLQ 304 (459)
T ss_pred HH--------HHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCC---ccccHHHHHHHHh
Confidence 00 001123333334568899999999999997 445667765554222 2233 4557777888888
Q ss_pred cCCCCCchHHHHHHHHHhcCCHHHHHHHHHHH
Q 046312 431 LEPRGSQNLVIVANKYAEVGMWEKVSNVRRFM 462 (514)
Q Consensus 431 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 462 (514)
++|-.+.+|..++-.|++..-++-|-.++-+-
T Consensus 305 ~nPfP~ETFANlLllyCKNeyf~lAADvLAEn 336 (459)
T KOG4340|consen 305 QNPFPPETFANLLLLYCKNEYFDLAADVLAEN 336 (459)
T ss_pred cCCCChHHHHHHHHHHhhhHHHhHHHHHHhhC
Confidence 89887889999999999999999998887654
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.7e-05 Score=69.38 Aligned_cols=312 Identities=9% Similarity=-0.030 Sum_probs=210.1
Q ss_pred ChHHHHHHHHhcccCCCCChHHHHHHHcccCCCCCcccHHHHH---HHHHhCCCchHHHHHHHHHHHcCCCCCcch-HHH
Q 046312 59 DAQILKELVRFCTLSSSKNLTYARSILCNYVNDSVPIPWNNLI---RGYAWSDRPREAVWVFIDMKRRGIKPTEFT-YPF 134 (514)
Q Consensus 59 ~~~~~~~ll~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~-~~~ 134 (514)
++.-.-.+-..+. .+|.+.+|+.-|.... ..|+..|.++. ..|...|+...|+.=+.+..+ .+||-.. -..
T Consensus 37 dvekhlElGk~ll--a~~Q~sDALt~yHaAv-e~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQ 111 (504)
T KOG0624|consen 37 DVEKHLELGKELL--ARGQLSDALTHYHAAV-EGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQ 111 (504)
T ss_pred HHHHHHHHHHHHH--HhhhHHHHHHHHHHHH-cCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHH
Confidence 3343444444444 5888999988888887 77887777765 357778888888888888777 4677642 222
Q ss_pred HHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCHHHHHHHhhccCCCChhhHHHHHHHHHhCCChhHH
Q 046312 135 VLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKRDACKVFDDMCERSVVSWNVIITVCVENLWLGEA 214 (514)
Q Consensus 135 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 214 (514)
-...+.+.|.+++|..=|+..++.. |+..+ ...++.+.-..++-+.+ ...+..+...|+...|
T Consensus 112 Rg~vllK~Gele~A~~DF~~vl~~~--~s~~~---~~eaqskl~~~~e~~~l------------~~ql~s~~~~GD~~~a 174 (504)
T KOG0624|consen 112 RGVVLLKQGELEQAEADFDQVLQHE--PSNGL---VLEAQSKLALIQEHWVL------------VQQLKSASGSGDCQNA 174 (504)
T ss_pred hchhhhhcccHHHHHHHHHHHHhcC--CCcch---hHHHHHHHHhHHHHHHH------------HHHHHHHhcCCchhhH
Confidence 2345778899999999998888773 33222 11222222222222221 1223345567788888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCc-
Q 046312 215 VGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEE- 293 (514)
Q Consensus 215 ~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~- 293 (514)
+.....+.+.. +.|...|..-..+|...|++..|..-++...+..- .+...+..+...+...|+.+.++...++..+
T Consensus 175 i~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~-DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl 252 (504)
T KOG0624|consen 175 IEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQ-DNTEGHYKISQLLYTVGDAENSLKEIRECLKL 252 (504)
T ss_pred HHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccc-cchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc
Confidence 88888887763 55777777777888888888888777777666543 3455555677777888888888887777765
Q ss_pred -CCHH----HHHHH---------HHHHHHcCChHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHhccCcHHHHHHHHHH
Q 046312 294 -INVW----TWSAM---------ILGLAQHGYAEEALELFSNMKNSSISPNYV---TFLGVLCACNHAGMVEDGYRYFHE 356 (514)
Q Consensus 294 -~~~~----~~~~l---------i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~---~~~~ll~~~~~~~~~~~a~~~~~~ 356 (514)
||.. .|..+ +......++|.++++-.+...+........ .+..+-.++...+++.+|++.-.+
T Consensus 253 dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~e 332 (504)
T KOG0624|consen 253 DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKE 332 (504)
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHH
Confidence 3221 12111 234566788889998888887754332222 345555677788999999999998
Q ss_pred HHHhhCCCCc-hHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC
Q 046312 357 MEHVHGIKPM-RIHYHTMADILARAGHLKEAYTFIMNMP-FQP 397 (514)
Q Consensus 357 ~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p 397 (514)
+. .+.|+ +.++.--..+|.-...++.|+.-|+.+. ..+
T Consensus 333 vL---~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~ 372 (504)
T KOG0624|consen 333 VL---DIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNE 372 (504)
T ss_pred HH---hcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc
Confidence 87 44676 7888888889999999999999999886 444
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.7e-05 Score=78.59 Aligned_cols=125 Identities=11% Similarity=0.084 Sum_probs=88.6
Q ss_pred HHHHHHhcccCCCCChHHHHHHHcccCC-CCCccc-----HHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHH
Q 046312 63 LKELVRFCTLSSSKNLTYARSILCNYVN-DSVPIP-----WNNLIRGYAWSDRPREAVWVFIDMKRRGIKPTEFTYPFVL 136 (514)
Q Consensus 63 ~~~ll~~~~~~~~g~~~~A~~~~~~~~~-~~~~~~-----~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll 136 (514)
+..+.+.|. ++|-+..|++.+..+.. .+.+++ =..++ .|.-.-.++.+++.++.|...++.-|..+...+.
T Consensus 609 ra~IAqLCE--KAGL~qraLehytDl~DIKR~vVhth~L~pEwLv-~yFg~lsve~s~eclkaml~~NirqNlQi~VQva 685 (1666)
T KOG0985|consen 609 RAEIAQLCE--KAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLV-NYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVA 685 (1666)
T ss_pred HHHHHHHHH--hcchHHHHHHhcccHHHHHHHHHHhccCCHHHHH-HHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 677888999 99999999988877653 111111 11223 3333457889999999999988888887777666
Q ss_pred HHHhccCCchHHHHHHHHHHHh-----------CCCCCcchHHHHHHHHHcCCCHHHHHHHhhcc
Q 046312 137 KACAEISGLNEGMQVQANVTKS-----------GLDSDVYTNNNLVRFYGSCRRKRDACKVFDDM 190 (514)
Q Consensus 137 ~~~~~~g~~~~a~~~~~~~~~~-----------~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~ 190 (514)
.-|...=-.+...++|+..... ++.-|+.+.-..|.+.++.|++.+.+++.++-
T Consensus 686 tky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicres 750 (1666)
T KOG0985|consen 686 TKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRES 750 (1666)
T ss_pred HHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhcc
Confidence 6666655556666666654321 24567777788899999999999999988765
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=4.2e-05 Score=83.27 Aligned_cols=328 Identities=10% Similarity=-0.074 Sum_probs=208.5
Q ss_pred HHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCC------CC--cchHHHHHHHH
Q 046312 103 GYAWSDRPREAVWVFIDMKRRGIKPTEFTYPFVLKACAEISGLNEGMQVQANVTKSGLD------SD--VYTNNNLVRFY 174 (514)
Q Consensus 103 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~------~~--~~~~~~li~~~ 174 (514)
.+...|++..+...++.+.......+..........+...|+++++...+......--. +. ......+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 34456777777777666522211122333334445566789999999999887553111 11 11222334456
Q ss_pred HcCCCHHHHHHHhhccCC----CCh----hhHHHHHHHHHhCCChhHHHHHHHHHHHCCC---CCC--HHHHHHHHHHHh
Q 046312 175 GSCRRKRDACKVFDDMCE----RSV----VSWNVIITVCVENLWLGEAVGYFVKMKDLGF---EPD--ETTMLVVLSACT 241 (514)
Q Consensus 175 ~~~~~~~~A~~~~~~~~~----~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~---~p~--~~t~~~ll~~~~ 241 (514)
...|++++|...+++... .+. ...+.+...+...|++++|...+.+.....- .+. ..++..+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 788999999998887622 221 2445566677889999999999988765311 111 234455666778
Q ss_pred ccCChHHHHHHHHHHHHh----CCC--C-chhHHHHHHHHHHhcCCHHHHHHHHHhcCc------C--CHHHHHHHHHHH
Q 046312 242 ELGNLSLGKWVHLQLIER----GTV--L-NCQLGTALIDMYAKCGAVGCARLLFSRMEE------I--NVWTWSAMILGL 306 (514)
Q Consensus 242 ~~g~~~~a~~~~~~~~~~----~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------~--~~~~~~~li~~~ 306 (514)
..|+++.|...+++.... +.. + ....+..+...+...|++++|...+.+... + ....+..+...+
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 899999999998877653 211 1 223445566777888999999999887643 1 123444566678
Q ss_pred HHcCChHHHHHHHHHHHHCC--CCCCHH--H-H-HHHHHHHhccCcHHHHHHHHHHHHHhhCCCCc---hHHHHHHHHHH
Q 046312 307 AQHGYAEEALELFSNMKNSS--ISPNYV--T-F-LGVLCACNHAGMVEDGYRYFHEMEHVHGIKPM---RIHYHTMADIL 377 (514)
Q Consensus 307 ~~~~~~~~a~~~~~~m~~~g--~~p~~~--~-~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~ 377 (514)
...|++++|...+.+..... ...... . . ...+..+...|+.+.|...+...... ..... ...+..+..++
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~-~~~~~~~~~~~~~~~a~~~ 701 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKP-EFANNHFLQGQWRNIARAQ 701 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCC-CCccchhHHHHHHHHHHHH
Confidence 88999999999998886521 111110 1 0 11223445578999999887775531 11111 11134567778
Q ss_pred HhcCCHHHHHHHHHhCC-------CCC-CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCC
Q 046312 378 ARAGHLKEAYTFIMNMP-------FQP-NPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPR 434 (514)
Q Consensus 378 ~~~g~~~~A~~~~~~~~-------~~p-~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~ 434 (514)
...|+.++|...+++.. ..+ ...+...+..++...|+ .+.|...+..+.++...
T Consensus 702 ~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~---~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 702 ILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGR---KSEAQRVLLEALKLANR 763 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHhCc
Confidence 89999999999998874 111 12456667778899999 99999999999887643
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.73 E-value=5.3e-07 Score=85.42 Aligned_cols=218 Identities=12% Similarity=0.032 Sum_probs=167.8
Q ss_pred hccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCc---CCHHHHHHHHHHHHHcCChHHHHH
Q 046312 241 TELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEE---INVWTWSAMILGLAQHGYAEEALE 317 (514)
Q Consensus 241 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~ 317 (514)
.+.|++.+|.-.|+..++..+. +...|..|.......++-..|+..+.+..+ .|......|.-.|...|.-..|+.
T Consensus 296 m~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~ 374 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK 374 (579)
T ss_pred HhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence 4667788888888888877633 677788888888888888888888887775 356777777778888888888888
Q ss_pred HHHHHHHCCCC-----C---CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHH
Q 046312 318 LFSNMKNSSIS-----P---NYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTF 389 (514)
Q Consensus 318 ~~~~m~~~g~~-----p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 389 (514)
.++.-+....+ + +...-.. ..+..........++|-++....+.++|..+...|.-.|--.|.+++|.+.
T Consensus 375 ~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDc 452 (579)
T KOG1125|consen 375 MLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDC 452 (579)
T ss_pred HHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHH
Confidence 88877653210 0 1000000 122333445566677777776657668888888898889999999999999
Q ss_pred HHhCC-CCC-CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 046312 390 IMNMP-FQP-NPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKN 464 (514)
Q Consensus 390 ~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 464 (514)
|+.+. ++| |...||-|...+....+ ..+|..++.++.++.|.-..+..-|+-.|...|.+++|.+.|-....
T Consensus 453 f~~AL~v~Pnd~~lWNRLGAtLAN~~~---s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 453 FEAALQVKPNDYLLWNRLGATLANGNR---SEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHhcCCchHHHHHHhhHHhcCCcc---cHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 99986 677 56789999888888777 99999999999999999999999999999999999999999877653
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.69 E-value=6.3e-05 Score=74.49 Aligned_cols=207 Identities=14% Similarity=0.118 Sum_probs=143.7
Q ss_pred CCChHHHHHHHHhcccCCCCChHHHHHHHcccCCCC----------Cc-ccHHHHHHHHHhCCCchHHHHHHHHHHHcCC
Q 046312 57 QNDAQILKELVRFCTLSSSKNLTYARSILCNYVNDS----------VP-IPWNNLIRGYAWSDRPREAVWVFIDMKRRGI 125 (514)
Q Consensus 57 ~~~~~~~~~ll~~~~~~~~g~~~~A~~~~~~~~~~~----------~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 125 (514)
-.+..+|..+.++|. +..+++-|.-.+..|.+.+ +. ..-....-.-...|-.++|+.+|++.++
T Consensus 754 IkS~~vW~nmA~McV--kT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR--- 828 (1416)
T KOG3617|consen 754 IKSDSVWDNMASMCV--KTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELGMLEEALILYRQCKR--- 828 (1416)
T ss_pred HhhhHHHHHHHHHhh--hhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHhhHHHHHHHHHHHHH---
Confidence 346689999999999 9999999988888875411 11 1111222223456889999999998876
Q ss_pred CCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCHHHHHHHhhccCCC------------
Q 046312 126 KPTEFTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKRDACKVFDDMCER------------ 193 (514)
Q Consensus 126 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~------------ 193 (514)
|..|-+.|-..|.+++|.++-+.=-+..+ ..||.....-+-..+|.+.|++.|++...+
T Consensus 829 ------~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p 899 (1416)
T KOG3617|consen 829 ------YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYP 899 (1416)
T ss_pred ------HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhCh
Confidence 34455677788999999888764322221 245555666666778888888888876221
Q ss_pred -----------ChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCC
Q 046312 194 -----------SVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTV 262 (514)
Q Consensus 194 -----------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 262 (514)
|...|.-...-+-..|+.+.|+.+|...++ |-.+++..|-.|+.++|.++-++-
T Consensus 900 ~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es------ 964 (1416)
T KOG3617|consen 900 KQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES------ 964 (1416)
T ss_pred HHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc------
Confidence 333333333444456777777777776653 456677778889999998886652
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 046312 263 LNCQLGTALIDMYAKCGAVGCARLLFSRME 292 (514)
Q Consensus 263 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 292 (514)
-|......|.+.|-..|++.+|..+|.+..
T Consensus 965 gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 965 GDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 366777788999999999999999988765
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.66 E-value=4.7e-08 Score=56.77 Aligned_cols=33 Identities=30% Similarity=0.571 Sum_probs=26.4
Q ss_pred CCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 046312 362 GIKPMRIHYHTMADILARAGHLKEAYTFIMNMP 394 (514)
Q Consensus 362 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 394 (514)
|+.||..+|++||.+|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 677888888888888888888888888888774
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.66 E-value=0.00018 Score=68.21 Aligned_cols=129 Identities=15% Similarity=0.128 Sum_probs=83.6
Q ss_pred CCChHHHHHHHHhcccCCCCChHHHHHHHcccCC-CC-CcccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHH
Q 046312 57 QNDAQILKELVRFCTLSSSKNLTYARSILCNYVN-DS-VPIPWNNLIRGYAWSDRPREAVWVFIDMKRRGIKPTEFTYPF 134 (514)
Q Consensus 57 ~~~~~~~~~ll~~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 134 (514)
+-|..+|+.||+-+. ....++++..++++.. .| .+..|..-|..-.+..+++....+|.+....- .+...|..
T Consensus 17 P~di~sw~~lire~q---t~~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~l 91 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQ---TQPIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKL 91 (656)
T ss_pred CccHHHHHHHHHHHc---cCCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHH
Confidence 457889999999877 4499999999998863 23 34578888999999999999999999987753 35556666
Q ss_pred HHHHHhc-cCCchHHHHHHHH-----HHHhCCCC-CcchHHHHHHHH---------HcCCCHHHHHHHhhcc
Q 046312 135 VLKACAE-ISGLNEGMQVQAN-----VTKSGLDS-DVYTNNNLVRFY---------GSCRRKRDACKVFDDM 190 (514)
Q Consensus 135 ll~~~~~-~g~~~~a~~~~~~-----~~~~~~~~-~~~~~~~li~~~---------~~~~~~~~A~~~~~~~ 190 (514)
-+..-.+ .|+...+....-+ +.+.|+.+ +-.+|+..+..+ ....+++..+++++++
T Consensus 92 Yl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqra 163 (656)
T KOG1914|consen 92 YLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRA 163 (656)
T ss_pred HHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHH
Confidence 6654332 3444443333222 23345443 234455555432 3334566677777777
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.63 E-value=0.00026 Score=71.84 Aligned_cols=366 Identities=13% Similarity=0.089 Sum_probs=207.7
Q ss_pred HHHHHHHHHhCCC--CChHHHHHHHHhcccCCCCChHHHHHHHcccCCCCCccc-----HHHHHHHHHhCCCchHHHHHH
Q 046312 45 YQIHAQIQVSGLQ--NDAQILKELVRFCTLSSSKNLTYARSILCNYVNDSVPIP-----WNNLIRGYAWSDRPREAVWVF 117 (514)
Q Consensus 45 ~~~~~~~~~~g~~--~~~~~~~~ll~~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~li~~~~~~g~~~~a~~~~ 117 (514)
+++.++.+..+++ .|+.--+..+.++. ..+-..+..++++++.-.+++++ -|.||-...+ -+.....++.
T Consensus 967 RqLiDqVv~tal~E~~dPe~vS~tVkAfM--tadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI 1043 (1666)
T KOG0985|consen 967 RQLIDQVVQTALPETQDPEEVSVTVKAFM--TADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYI 1043 (1666)
T ss_pred HHHHHHHHHhcCCccCChHHHHHHHHHHH--hcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHH
Confidence 3444444444433 24444455555555 55555666666665532233322 1222222222 2344455555
Q ss_pred HHHHHcCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCHHHHHHHhhccCCCChhh
Q 046312 118 IDMKRRGIKPTEFTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKRDACKVFDDMCERSVVS 197 (514)
Q Consensus 118 ~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~ 197 (514)
+++-..+ .| .+...+...+-+++|..+|++. ..+....+.||. .-+.++.|.++.++..+ ...
T Consensus 1044 ~rLdnyD-a~------~ia~iai~~~LyEEAF~ifkkf-----~~n~~A~~VLie---~i~~ldRA~efAe~~n~--p~v 1106 (1666)
T KOG0985|consen 1044 NRLDNYD-AP------DIAEIAIENQLYEEAFAIFKKF-----DMNVSAIQVLIE---NIGSLDRAYEFAERCNE--PAV 1106 (1666)
T ss_pred HHhccCC-ch------hHHHHHhhhhHHHHHHHHHHHh-----cccHHHHHHHHH---HhhhHHHHHHHHHhhCC--hHH
Confidence 5443321 11 1233344455555666555533 222333333332 23455556555555543 356
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 046312 198 WNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAK 277 (514)
Q Consensus 198 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 277 (514)
|..+..+-.+.|...+|++-|-+. -|...|..++..+.+.|.+++-.+++...++..-+|... +.|+-+|++
T Consensus 1107 WsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAk 1178 (1666)
T KOG0985|consen 1107 WSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAK 1178 (1666)
T ss_pred HHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHH
Confidence 788888888888888887766432 366778888888888888888888887777766555443 567788888
Q ss_pred cCCHHHHHHHHHhcCc-----------------------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH
Q 046312 278 CGAVGCARLLFSRMEE-----------------------INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTF 334 (514)
Q Consensus 278 ~g~~~~A~~~~~~~~~-----------------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 334 (514)
.+++.+.++++..--. .++.-|..|...+...|++..|...-++. .+..||
T Consensus 1179 t~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktW 1252 (1666)
T KOG0985|consen 1179 TNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKA------NSTKTW 1252 (1666)
T ss_pred hchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHH
Confidence 8887777665532110 23345566666677777777766655543 356677
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHhhCCC--CchHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHH
Q 046312 335 LGVLCACNHAGMVEDGYRYFHEMEHVHGIK--PMRIHYHTMADILARAGHLKEAYTFIMNMP--FQPNPIVLRALLSASS 410 (514)
Q Consensus 335 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~ 410 (514)
..+-.+|...+.+..|. | +|+. ....-..-++..|...|-+++...+++... .+.....|.-|.-.|+
T Consensus 1253 K~VcfaCvd~~EFrlAQ-----i---CGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYs 1324 (1666)
T KOG0985|consen 1253 KEVCFACVDKEEFRLAQ-----I---CGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYS 1324 (1666)
T ss_pred HHHHHHHhchhhhhHHH-----h---cCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHH
Confidence 77777787776655442 2 2433 344556778999999999999999998774 3334455666665666
Q ss_pred hcCCCCcchHHHHHHHHHHh-cC-C------CCCchHHHHHHHHHhcCCHHHHH
Q 046312 411 IHDAKYQDGVGNEVRRRLLE-LE-P------RGSQNLVIVANKYAEVGMWEKVS 456 (514)
Q Consensus 411 ~~~~~~~~~~a~~~~~~~~~-~~-p------~~~~~~~~l~~~~~~~g~~~~A~ 456 (514)
+-. .++..+-++.+.. .+ | +....|.-|.-.|.+-..+|.|.
T Consensus 1325 kyk----p~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNAa 1374 (1666)
T KOG0985|consen 1325 KYK----PEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAA 1374 (1666)
T ss_pred hcC----HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 543 4555555555543 22 1 12234555555555555555543
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=6.4e-06 Score=70.96 Aligned_cols=150 Identities=7% Similarity=0.024 Sum_probs=113.2
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCC
Q 046312 303 ILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGH 382 (514)
Q Consensus 303 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 382 (514)
+..|...|+++.+....+.+.. |. ..+...++.+++...++...+. -+.+...|..+...|...|+
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~--~P~~~~~w~~Lg~~~~~~g~ 88 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWRND 88 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCC
Confidence 4467888888876554433221 11 0122356677777777777763 25568889999999999999
Q ss_pred HHHHHHHHHhCC-CCC-CHHHHHHHHHHH-HhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHH
Q 046312 383 LKEAYTFIMNMP-FQP-NPIVLRALLSAS-SIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVR 459 (514)
Q Consensus 383 ~~~A~~~~~~~~-~~p-~~~~~~~l~~~~-~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 459 (514)
+++|...|++.. ..| +...+..+..++ ...|+ ...+++.++++.+.+.+|+++.++..++..+.+.|++++|...|
T Consensus 89 ~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~-~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~ 167 (198)
T PRK10370 89 YDNALLAYRQALQLRGENAELYAALATVLYYQAGQ-HMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELW 167 (198)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999886 445 567777777764 55555 11389999999999999999999999999999999999999999
Q ss_pred HHHHhCCC
Q 046312 460 RFMKNVGL 467 (514)
Q Consensus 460 ~~m~~~~~ 467 (514)
+++.+...
T Consensus 168 ~~aL~l~~ 175 (198)
T PRK10370 168 QKVLDLNS 175 (198)
T ss_pred HHHHhhCC
Confidence 99987654
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.60 E-value=2e-05 Score=82.25 Aligned_cols=201 Identities=14% Similarity=0.115 Sum_probs=166.1
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCc--------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 046312 264 NCQLGTALIDMYAKCGAVGCARLLFSRMEE--------INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFL 335 (514)
Q Consensus 264 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 335 (514)
+...|-..|......++.++|+++.++... .-...|.+++.....-|.-+...++|+++.+. --....|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHH
Confidence 456777888888999999999999998764 23457888888888888888999999999874 22345588
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC---HHHHHHHHHHHHh
Q 046312 336 GVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP-FQPN---PIVLRALLSASSI 411 (514)
Q Consensus 336 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~---~~~~~~l~~~~~~ 411 (514)
.|...|.+.+.+++|.++++.|.++++ -....|..++..+.+..+-+.|..++.++. .-|. .....-.+..-.+
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence 899999999999999999999999765 567789999999999999999999998875 3343 3444555566678
Q ss_pred cCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC
Q 046312 412 HDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNVGLKKMK 471 (514)
Q Consensus 412 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 471 (514)
.|+ .+.++.+++-...-.|.-.+.|+.+++.-.+.|..+.++.+|++....++.+-.
T Consensus 1613 ~GD---aeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kk 1669 (1710)
T KOG1070|consen 1613 YGD---AERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKK 1669 (1710)
T ss_pred cCC---chhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhH
Confidence 899 888999999999999999999999999999999999999999999998875443
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.8e-05 Score=75.32 Aligned_cols=248 Identities=12% Similarity=0.079 Sum_probs=176.3
Q ss_pred HHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCHHHHHHHhhccCC---CChhhHHHHHHHHHhCCChhHH
Q 046312 138 ACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKRDACKVFDDMCE---RSVVSWNVIITVCVENLWLGEA 214 (514)
Q Consensus 138 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a 214 (514)
-+.+.|++..|.-.|+..++.. +-+...|..|.......++-..|+..+++..+ .+..+.-+|.-.|...|.-..|
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHH
Confidence 3467889999999999998875 44778999999999999998889988888844 3556777777889999999999
Q ss_pred HHHHHHHHHCCCC-----C---CHHHHHHHHHHHhccCChHHHHHHHHHH-HHhCCCCchhHHHHHHHHHHhcCCHHHHH
Q 046312 215 VGYFVKMKDLGFE-----P---DETTMLVVLSACTELGNLSLGKWVHLQL-IERGTVLNCQLGTALIDMYAKCGAVGCAR 285 (514)
Q Consensus 215 ~~~~~~m~~~~~~-----p---~~~t~~~ll~~~~~~g~~~~a~~~~~~~-~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 285 (514)
+..|+..+....+ + +...-.. ..+.....+....++|-++ ...+..+|+.++..|.-.|--.|++++|.
T Consensus 373 l~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 373 LKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 9999888664311 0 0000000 1111112233444444444 44455688889999999999999999999
Q ss_pred HHHHhcCc--C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHHHHhh
Q 046312 286 LLFSRMEE--I-NVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNY-VTFLGVLCACNHAGMVEDGYRYFHEMEHVH 361 (514)
Q Consensus 286 ~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 361 (514)
+.|+.... | |...||.|...++...+.++|+..|++.++ ++|+. .....|.-+|...|.+++|...|-.+....
T Consensus 451 Dcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq 528 (579)
T KOG1125|consen 451 DCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQ 528 (579)
T ss_pred HHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhh
Confidence 99998875 3 678999999999999999999999999998 57773 333335557889999999998887766431
Q ss_pred CC--------CCchHHHHHHHHHHHhcCCHHHHHHHH
Q 046312 362 GI--------KPMRIHYHTMADILARAGHLKEAYTFI 390 (514)
Q Consensus 362 ~~--------~p~~~~~~~li~~~~~~g~~~~A~~~~ 390 (514)
.. .++...|..|=.++.-.++.|-+.+..
T Consensus 529 ~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~ 565 (579)
T KOG1125|consen 529 RKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAA 565 (579)
T ss_pred hcccccccCCcchHHHHHHHHHHHHHcCCchHHHHhc
Confidence 11 122346666666666666666554443
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.59 E-value=8.2e-06 Score=73.17 Aligned_cols=183 Identities=9% Similarity=-0.023 Sum_probs=124.4
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcCc--CC-H---HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHH
Q 046312 263 LNCQLGTALIDMYAKCGAVGCARLLFSRMEE--IN-V---WTWSAMILGLAQHGYAEEALELFSNMKNSSISPNY--VTF 334 (514)
Q Consensus 263 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~ 334 (514)
.....+..+...+...|++++|...|+++.+ |+ . ..+..+..++...|++++|...++++.+....... .++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 3456677778888888999999888887765 32 2 45677778888889999999999888874321111 134
Q ss_pred HHHHHHHhcc--------CcHHHHHHHHHHHHHhhCCCCchH-HHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHH
Q 046312 335 LGVLCACNHA--------GMVEDGYRYFHEMEHVHGIKPMRI-HYHTMADILARAGHLKEAYTFIMNMPFQPNPIVLRAL 405 (514)
Q Consensus 335 ~~ll~~~~~~--------~~~~~a~~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l 405 (514)
..+..++... |+.+.|.+.++.+.+. .|+.. .+..+... .. ..... . .....+
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~-~~---~~~~~---~--------~~~~~~ 172 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRM-DY---LRNRL---A--------GKELYV 172 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHH-HH---HHHHH---H--------HHHHHH
Confidence 4444455443 6788888888888765 44432 22222111 11 01100 0 011245
Q ss_pred HHHHHhcCCCCcchHHHHHHHHHHhcCCCCC---chHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 046312 406 LSASSIHDAKYQDGVGNEVRRRLLELEPRGS---QNLVIVANKYAEVGMWEKVSNVRRFMKNVG 466 (514)
Q Consensus 406 ~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 466 (514)
...+...|+ .+.|...++.+.+..|+++ .++..++.++.+.|++++|..+++.+..+.
T Consensus 173 a~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 173 ARFYLKRGA---YVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHcCC---hHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 566888999 9999999999999877654 578899999999999999999999887643
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.59 E-value=2e-05 Score=77.10 Aligned_cols=220 Identities=14% Similarity=0.122 Sum_probs=175.4
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 046312 261 TVLNCQLGTALIDMYAKCGAVGCARLLFSRMEEINVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCA 340 (514)
Q Consensus 261 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 340 (514)
.+|-...-..+.+.+...|-...|..+|+++. .|.-++.+|+..|+..+|..+..+-.+ -+|+...|..+...
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erle-----mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERLE-----MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDV 466 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhHH-----HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhh
Confidence 34445556778889999999999999999865 788888999999999999999988887 37889999999888
Q ss_pred HhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCCCcc
Q 046312 341 CNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP-FQP-NPIVLRALLSASSIHDAKYQD 418 (514)
Q Consensus 341 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~~ 418 (514)
.-...-+++|.++.+....+ .-..+.....+.++++++.+.|+.-. ..| ...+|-.+..+..+.++ +
T Consensus 467 ~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek---~ 535 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEK---E 535 (777)
T ss_pred ccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhh---h
Confidence 88888888898888776542 11122222334789999999997754 444 56888888888889999 9
Q ss_pred hHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCceeEEEECCeEEEEEecccCCcChHHH
Q 046312 419 GVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNVGLKKMKGMSWVELGGSIHRFYSGYDSQVELAGI 498 (514)
Q Consensus 419 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 498 (514)
+.+.+++.....++|++...|+.+..+|.+.|+..+|...+++....+.+ +-..| ...+.-...-|.+++|
T Consensus 536 q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~--~w~iW-------ENymlvsvdvge~eda 606 (777)
T KOG1128|consen 536 QAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ--HWQIW-------ENYMLVSVDVGEFEDA 606 (777)
T ss_pred HHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC--CCeee-------echhhhhhhcccHHHH
Confidence 99999999999999999999999999999999999999999999988743 33556 4455555677888888
Q ss_pred HHHHHHHHH
Q 046312 499 YQILETLNL 507 (514)
Q Consensus 499 ~~~~~~m~~ 507 (514)
.+.+.+|-.
T Consensus 607 ~~A~~rll~ 615 (777)
T KOG1128|consen 607 IKAYHRLLD 615 (777)
T ss_pred HHHHHHHHH
Confidence 888777654
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.56 E-value=0.0002 Score=70.26 Aligned_cols=47 Identities=11% Similarity=-0.019 Sum_probs=29.9
Q ss_pred chHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 046312 418 DGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNVG 466 (514)
Q Consensus 418 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 466 (514)
++-|-.+.+...+- .-+.+...++.-+...|++++|.+-+-+....+
T Consensus 979 fd~afdlari~~k~--k~~~vhlk~a~~ledegk~edaskhyveaikln 1025 (1636)
T KOG3616|consen 979 FDFAFDLARIAAKD--KMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLN 1025 (1636)
T ss_pred hhhHHHHHHHhhhc--cCccchhHHhhhhhhccchhhhhHhhHHHhhcc
Confidence 44444444433322 224467788888899999999988777665543
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.55 E-value=4.5e-05 Score=72.10 Aligned_cols=348 Identities=11% Similarity=0.030 Sum_probs=209.2
Q ss_pred HHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCC-cchHHHHHHHHHcCCCH
Q 046312 102 RGYAWSDRPREAVWVFIDMKRRGIKPTEFTYPFVLKACAEISGLNEGMQVQANVTKSGLDSD-VYTNNNLVRFYGSCRRK 180 (514)
Q Consensus 102 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~ 180 (514)
.+....|+++.|+.+|-+..... ++|...|..-..+++..|++++|.+=-.+-++. .|+ ..-|+....++.-.|++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccH
Confidence 34567899999999999988763 457778999999999999999998877666655 565 46788899999999999
Q ss_pred HHHHHHhhccCC---CChhhHHHHHHHHHhCCChhHH---HHHHHHHHHC---CCCCCHHHHHHHHHHHhcc-------C
Q 046312 181 RDACKVFDDMCE---RSVVSWNVIITVCVENLWLGEA---VGYFVKMKDL---GFEPDETTMLVVLSACTEL-------G 244 (514)
Q Consensus 181 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a---~~~~~~m~~~---~~~p~~~t~~~ll~~~~~~-------g 244 (514)
++|+.-|.+-.+ .+...++-+..++......... -.++...... ........|..++...-+. .
T Consensus 87 ~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l 166 (539)
T KOG0548|consen 87 EEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYL 166 (539)
T ss_pred HHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhccc
Confidence 999999988743 3556777777776211000000 0011111000 0000112233333322111 0
Q ss_pred ChHHHHHHHHHHHH--------hC-------CCC----------------------chhHHHHHHHHHHhcCCHHHHHHH
Q 046312 245 NLSLGKWVHLQLIE--------RG-------TVL----------------------NCQLGTALIDMYAKCGAVGCARLL 287 (514)
Q Consensus 245 ~~~~a~~~~~~~~~--------~~-------~~~----------------------~~~~~~~li~~~~~~g~~~~A~~~ 287 (514)
+.+...+..-.+.. .+ ..| -..-...+.++..+..+++.|.+.
T Consensus 167 ~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~ 246 (539)
T KOG0548|consen 167 NDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQH 246 (539)
T ss_pred ccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHH
Confidence 11111111111100 00 011 001223445555666677777777
Q ss_pred HHhcCc--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH-------HHHHHhccCcHHHHHHHHHHHH
Q 046312 288 FSRMEE--INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLG-------VLCACNHAGMVEDGYRYFHEME 358 (514)
Q Consensus 288 ~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~-------ll~~~~~~~~~~~a~~~~~~~~ 358 (514)
+....+ .+..-++....+|...|.+.++...-....+.|.. ...-|+. +..+|.+.++++.+..+|.+..
T Consensus 247 y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaL 325 (539)
T KOG0548|consen 247 YAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKAL 325 (539)
T ss_pred HHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHh
Confidence 766554 33344555566677777777766666665555421 1112222 2234555677777777777766
Q ss_pred HhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCH-HHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCC
Q 046312 359 HVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP-FQPNP-IVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGS 436 (514)
Q Consensus 359 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~~-~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 436 (514)
.. .-.|+. ..+....+++....+... +.|.. .-...-...+.+.|+ +..|...+.+++..+|++.
T Consensus 326 te-~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gd---y~~Av~~YteAIkr~P~Da 392 (539)
T KOG0548|consen 326 TE-HRTPDL---------LSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGD---YPEAVKHYTEAIKRDPEDA 392 (539)
T ss_pred hh-hcCHHH---------HHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccC---HHHHHHHHHHHHhcCCchh
Confidence 54 223332 223344455555554443 44543 222223566788899 9999999999999999999
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 046312 437 QNLVIVANKYAEVGMWEKVSNVRRFMKNVG 466 (514)
Q Consensus 437 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 466 (514)
..|..-+-+|.+.|.+..|.+-.+...+.+
T Consensus 393 ~lYsNRAac~~kL~~~~~aL~Da~~~ieL~ 422 (539)
T KOG0548|consen 393 RLYSNRAACYLKLGEYPEALKDAKKCIELD 422 (539)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 999999999999999999999888777764
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.6e-07 Score=54.53 Aligned_cols=32 Identities=38% Similarity=0.404 Sum_probs=16.1
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 046312 260 GTVLNCQLGTALIDMYAKCGAVGCARLLFSRM 291 (514)
Q Consensus 260 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 291 (514)
|+.||..+|++||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34455555555555555555555555555444
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.51 E-value=0.00012 Score=71.76 Aligned_cols=232 Identities=13% Similarity=0.076 Sum_probs=181.3
Q ss_pred CCCCcchHHHHHHHHHcCCCHHHHHHHhhccCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 046312 160 LDSDVYTNNNLVRFYGSCRRKRDACKVFDDMCERSVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSA 239 (514)
Q Consensus 160 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~ 239 (514)
++|-...-..+...+...|-...|..+|+++ ..|...|.+|+..|+..+|..+..+-.+ -+||...|..+.+.
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDV 466 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhh
Confidence 4555556677888999999999999999886 5688889999999999999999888877 37899999888888
Q ss_pred HhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCcC---CHHHHHHHHHHHHHcCChHHHH
Q 046312 240 CTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEEI---NVWTWSAMILGLAQHGYAEEAL 316 (514)
Q Consensus 240 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~ 316 (514)
....--+++|..+.+..... .-..+.....+.++++++.+.|+.-.+. -..+|-....+..+.+++..|.
T Consensus 467 ~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av 539 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAV 539 (777)
T ss_pred ccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHH
Confidence 77777778888877765433 2223333344578999999999977653 4578888888889999999999
Q ss_pred HHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC-
Q 046312 317 ELFSNMKNSSISPN-YVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP- 394 (514)
Q Consensus 317 ~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~- 394 (514)
+.|..-.. ..|| ...|+.+-.+|.+.++-.+|...+.+..+- . .-+...|...+....+.|.+++|.+.+.++.
T Consensus 540 ~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKc-n-~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 540 KAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKC-N-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhc-C-CCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 99998876 4666 567999999999999999999999999873 4 4455677778888889999999999998874
Q ss_pred ---CCCCHHHHHHHHHHH
Q 046312 395 ---FQPNPIVLRALLSAS 409 (514)
Q Consensus 395 ---~~p~~~~~~~l~~~~ 409 (514)
...|......++.+.
T Consensus 616 ~~~~~~d~~vl~~iv~~~ 633 (777)
T KOG1128|consen 616 LRKKYKDDEVLLIIVRTV 633 (777)
T ss_pred hhhhcccchhhHHHHHHH
Confidence 222444444444443
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.50 E-value=5.1e-05 Score=79.35 Aligned_cols=230 Identities=16% Similarity=0.086 Sum_probs=148.5
Q ss_pred ChhhHHHHHHHHHhCCChhHHHHHHHHHHHC-CCCCCH---HHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHH
Q 046312 194 SVVSWNVIITVCVENLWLGEAVGYFVKMKDL-GFEPDE---TTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGT 269 (514)
Q Consensus 194 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~~---~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 269 (514)
+...|-..|......++.++|.++.++.... +++-.. -.|.++++.-..-|.-+...++|+++.+.. ....+|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHH
Confidence 3445666666666666666666666666543 222111 234444444444455566666666666543 2345667
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCc---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccC
Q 046312 270 ALIDMYAKCGAVGCARLLFSRMEE---INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPN-YVTFLGVLCACNHAG 345 (514)
Q Consensus 270 ~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~ 345 (514)
.|...|.+.+++++|.++|+.|.+ .....|...+..+.++++-+.|..++.+..+.-.+-. .......+..-.+.|
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~G 1614 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYG 1614 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcC
Confidence 777777777788888888777765 3567788888888888888888888888776422211 223344444556778
Q ss_pred cHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC---CCC--CHHHHHHHHHHHHhcCCCCcchH
Q 046312 346 MVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP---FQP--NPIVLRALLSASSIHDAKYQDGV 420 (514)
Q Consensus 346 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~p--~~~~~~~l~~~~~~~~~~~~~~~ 420 (514)
+.++++.+|+.....+ +.-...|+.+++.-.+.|+.+.+..+|+++. ..| --..|.-.+..-..+|+ -+.
T Consensus 1615 DaeRGRtlfEgll~ay--PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gd---e~~ 1689 (1710)
T KOG1070|consen 1615 DAERGRTLFEGLLSAY--PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGD---EKN 1689 (1710)
T ss_pred CchhhHHHHHHHHhhC--ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCc---hhh
Confidence 8888888888888742 4456788888888888888888888888874 333 23667777777777787 555
Q ss_pred HHHHHHHHHh
Q 046312 421 GNEVRRRLLE 430 (514)
Q Consensus 421 a~~~~~~~~~ 430 (514)
++.+-.++.+
T Consensus 1690 vE~VKarA~E 1699 (1710)
T KOG1070|consen 1690 VEYVKARAKE 1699 (1710)
T ss_pred HHHHHHHHHH
Confidence 5555444443
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.47 E-value=0.00017 Score=67.65 Aligned_cols=179 Identities=16% Similarity=0.066 Sum_probs=119.9
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcCc-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH-HHHHHHH
Q 046312 263 LNCQLGTALIDMYAKCGAVGCARLLFSRMEE-INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVT-FLGVLCA 340 (514)
Q Consensus 263 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~-~~~ll~~ 340 (514)
|+...+...+........-..+-.++.+..+ .....+.-....+...|+.++|+..++.++.. .|+... .......
T Consensus 272 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i 349 (484)
T COG4783 272 PDFQLARARIRAKYEALPNQQAADLLAKRSKRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDI 349 (484)
T ss_pred ccHHHHHHHHHHHhccccccchHHHHHHHhCccchHHHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 3444444444443333333333333333322 22233333344456778888999999888774 455444 4455577
Q ss_pred HhccCcHHHHHHHHHHHHHhhCCCCc-hHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCCCc
Q 046312 341 CNHAGMVEDGYRYFHEMEHVHGIKPM-RIHYHTMADILARAGHLKEAYTFIMNMP--FQPNPIVLRALLSASSIHDAKYQ 417 (514)
Q Consensus 341 ~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~ 417 (514)
+.+.++.++|.+.++++... .|+ ....-.+..+|.+.|++.+|..++++.. .+-|+..|..|..+|...|+
T Consensus 350 ~~~~nk~~~A~e~~~kal~l---~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~--- 423 (484)
T COG4783 350 LLEANKAKEAIERLKKALAL---DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGN--- 423 (484)
T ss_pred HHHcCChHHHHHHHHHHHhc---CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCc---
Confidence 88889999999999888854 666 5556677888889999999988888875 45577888889899988888
Q ss_pred chHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 046312 418 DGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNVG 466 (514)
Q Consensus 418 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 466 (514)
. .......++.|...|++++|...+...++..
T Consensus 424 ~-----------------~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 424 R-----------------AEALLARAEGYALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred h-----------------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 2 3344566777888888999998888887654
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.46 E-value=0.00021 Score=67.14 Aligned_cols=197 Identities=16% Similarity=0.089 Sum_probs=139.2
Q ss_pred CHHHHHHHHHhcCc------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHH
Q 046312 280 AVGCARLLFSRMEE------INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRY 353 (514)
Q Consensus 280 ~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~ 353 (514)
+...+...-+.+.. ++...+...+.+......-..+..++-+-.+ ..-...-|...+. +...|.++.|+..
T Consensus 252 RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~aa~YG~A~~-~~~~~~~d~A~~~ 328 (484)
T COG4783 252 RIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSK--RGGLAAQYGRALQ-TYLAGQYDEALKL 328 (484)
T ss_pred HHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhC--ccchHHHHHHHHH-HHHhcccchHHHH
Confidence 34444545555543 4555666666554443333333333322222 1112333555554 4567999999999
Q ss_pred HHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhc
Q 046312 354 FHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP-FQPN-PIVLRALLSASSIHDAKYQDGVGNEVRRRLLEL 431 (514)
Q Consensus 354 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~ 431 (514)
++.+... .+-|+.......+.+.+.++.++|.+.++++. ..|+ ....-.+..++.+.|+ .+++...++....-
T Consensus 329 l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~---~~eai~~L~~~~~~ 403 (484)
T COG4783 329 LQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGK---PQEAIRILNRYLFN 403 (484)
T ss_pred HHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCC---hHHHHHHHHHHhhc
Confidence 9999874 34446666677889999999999999999987 6676 5667778899999999 99999999999999
Q ss_pred CCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCceeEEEECCeEEEEEecccCCcChHHHHHHHHHHHHHhh
Q 046312 432 EPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNVGLKKMKGMSWVELGGSIHRFYSGYDSQVELAGIYQILETLNLHMK 510 (514)
Q Consensus 432 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~ 510 (514)
+|+++..|..|+++|...|+..+|....-+.. ...|.+++|..++.+-++.++
T Consensus 404 ~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~--------------------------~~~G~~~~A~~~l~~A~~~~~ 456 (484)
T COG4783 404 DPEDPNGWDLLAQAYAELGNRAEALLARAEGY--------------------------ALAGRLEQAIIFLMRASQQVK 456 (484)
T ss_pred CCCCchHHHHHHHHHHHhCchHHHHHHHHHHH--------------------------HhCCCHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999998877663 334566666666666665553
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=9e-05 Score=76.66 Aligned_cols=233 Identities=11% Similarity=-0.005 Sum_probs=139.4
Q ss_pred hHHHHHHHHhccCCchHHHHHHHHHHHhCCCCC-cchHHHHHHHHHcCCCHHHHHHHhhccCCCChhhHHHHHHHHHhCC
Q 046312 131 TYPFVLKACAEISGLNEGMQVQANVTKSGLDSD-VYTNNNLVRFYGSCRRKRDACKVFDDMCERSVVSWNVIITVCVENL 209 (514)
Q Consensus 131 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~ 209 (514)
.+..|+..+...+++++|.++.+...+. .|+ ...|-.+...+...++.+++..+ .++.......
T Consensus 33 a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-------------~~l~~~~~~~ 97 (906)
T PRK14720 33 ELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-------------NLIDSFSQNL 97 (906)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-------------hhhhhccccc
Confidence 5666677776777777777777755554 333 33333333455555554443332 3344444455
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHH
Q 046312 210 WLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFS 289 (514)
Q Consensus 210 ~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 289 (514)
++.-+..+...|.+. .-+...+..+..+|.+.|+.+++..+|+++++.. +-|..+.|.+...|... ++++|++++.
T Consensus 98 ~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~ 173 (906)
T PRK14720 98 KWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLK 173 (906)
T ss_pred chhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHH
Confidence 554455555555553 2344567777778888888888888888888777 44777778888888777 8888887766
Q ss_pred hcCcCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHH
Q 046312 290 RMEEINVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIH 369 (514)
Q Consensus 290 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~ 369 (514)
+.. ..+...+++..+.++|.++... .|+...+ -..+.+.+...-+..--+.+
T Consensus 174 KAV-----------~~~i~~kq~~~~~e~W~k~~~~--~~~d~d~---------------f~~i~~ki~~~~~~~~~~~~ 225 (906)
T PRK14720 174 KAI-----------YRFIKKKQYVGIEEIWSKLVHY--NSDDFDF---------------FLRIERKVLGHREFTRLVGL 225 (906)
T ss_pred HHH-----------HHHHhhhcchHHHHHHHHHHhc--CcccchH---------------HHHHHHHHHhhhccchhHHH
Confidence 543 3366677888888888888764 2332221 11222222222233333445
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHH
Q 046312 370 YHTMADILARAGHLKEAYTFIMNMP--FQPNPIVLRALLSASS 410 (514)
Q Consensus 370 ~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~ 410 (514)
+.-+-..|-..++|+++..+|+.+. .+-|.....-++..|.
T Consensus 226 ~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 226 LEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 5556666777777888888887775 2334555555665554
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.46 E-value=0.0002 Score=61.80 Aligned_cols=176 Identities=14% Similarity=0.044 Sum_probs=103.7
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH
Q 046312 252 VHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEEINVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNY 331 (514)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 331 (514)
+.+.+.......+......-...|++.|++++|++........ .....=...+.+..+.+-|.+.+++|.+- -+.
T Consensus 95 l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~l--E~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded 169 (299)
T KOG3081|consen 95 LYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENL--EAAALNVQILLKMHRFDLAEKELKKMQQI---DED 169 (299)
T ss_pred HHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchH--HHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chH
Confidence 3444444444434344444445666777777777776663322 22222234455666777777777777752 345
Q ss_pred HHHHHHHHHHhc----cCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHH
Q 046312 332 VTFLGVLCACNH----AGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP--FQPNPIVLRAL 405 (514)
Q Consensus 332 ~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l 405 (514)
.|.+.|..++.+ .+.+..|.-+|+++.+ ...|+..+.+....++...|++++|..+++... ...++.+...+
T Consensus 170 ~tLtQLA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nl 247 (299)
T KOG3081|consen 170 ATLTQLAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANL 247 (299)
T ss_pred HHHHHHHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 566656655543 3456777777777775 357777777777777777777777777777764 33455555555
Q ss_pred HHHHHhcCCCCcchHHHHHHHHHHhcCCCCC
Q 046312 406 LSASSIHDAKYQDGVGNEVRRRLLELEPRGS 436 (514)
Q Consensus 406 ~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 436 (514)
+......|. ..+...+.+..+....|..+
T Consensus 248 iv~a~~~Gk--d~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 248 IVLALHLGK--DAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred HHHHHHhCC--ChHHHHHHHHHHHhcCCcch
Confidence 555555555 13444556666666666543
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.42 E-value=0.00017 Score=73.11 Aligned_cols=109 Identities=8% Similarity=-0.082 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCCCcchHHHHH
Q 046312 347 VEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP--FQPNPIVLRALLSASSIHDAKYQDGVGNEV 424 (514)
Q Consensus 347 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~ 424 (514)
...|...+.+.++. ...+..+|+.|.-. ...|++.-|.--|-+-. .+....+|..+.-.+....+ ++.|..+
T Consensus 799 ~~~Ai~c~KkaV~L--~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d---~E~A~~a 872 (1238)
T KOG1127|consen 799 ACTAIRCCKKAVSL--CANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQD---FEHAEPA 872 (1238)
T ss_pred HHHHHHHHHHHHHH--hhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEeccc---HHHhhHH
Confidence 34666777766652 23445566666544 55577777776665554 33456778888878888888 9999999
Q ss_pred HHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHH
Q 046312 425 RRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRF 461 (514)
Q Consensus 425 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 461 (514)
+..+..+.|.+...|...+......|+.-++..+|..
T Consensus 873 f~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 873 FSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred HHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 9999999999998898888888899998888888887
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.41 E-value=0.0024 Score=64.53 Aligned_cols=389 Identities=11% Similarity=0.018 Sum_probs=211.8
Q ss_pred HHHHhcccCCCCChHHHHHHHcccCC--CCCcccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHhcc
Q 046312 65 ELVRFCTLSSSKNLTYARSILCNYVN--DSVPIPWNNLIRGYAWSDRPREAVWVFIDMKRRGIKPTEFTYPFVLKACAEI 142 (514)
Q Consensus 65 ~ll~~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 142 (514)
..+.++.+.+.|+.++|..+++.... ..|..+-..+-..|...|+.++|..+|++..+. -|+......+..++.+.
T Consensus 46 ~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~ 123 (932)
T KOG2053|consen 46 KVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVRE 123 (932)
T ss_pred HHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHH
Confidence 33444444478899999888887643 335566777788888889999999999888775 46666777778888888
Q ss_pred CCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCC----------HHHHHHHhhccCCCC--hhh---HHHHHHHHHh
Q 046312 143 SGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRR----------KRDACKVFDDMCERS--VVS---WNVIITVCVE 207 (514)
Q Consensus 143 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~----------~~~A~~~~~~~~~~~--~~~---~~~li~~~~~ 207 (514)
+++.+-.++--+|.+. ++-+++.+-.+++.+...-. ..-|.+.++.+.+.+ ..+ ...-...+-.
T Consensus 124 ~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~ 202 (932)
T KOG2053|consen 124 KSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILEL 202 (932)
T ss_pred HHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHh
Confidence 8887766665555553 35566777777777655421 223555555554333 111 1111233445
Q ss_pred CCChhHHHHHH-HHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHH----------
Q 046312 208 NLWLGEAVGYF-VKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYA---------- 276 (514)
Q Consensus 208 ~~~~~~a~~~~-~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~---------- 276 (514)
.|.+++|..++ ....+.-...+...-+.-+..+...+++.+..++-.++...|.. | |...++.+.
T Consensus 203 ~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~D-d---y~~~~~sv~klLe~~~~~~ 278 (932)
T KOG2053|consen 203 QGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGND-D---YKIYTDSVFKLLELLNKEP 278 (932)
T ss_pred cccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCc-c---hHHHHHHHHHHHHhccccc
Confidence 77888888888 33433323334444456667777888888888888888888743 2 333333221
Q ss_pred ------hcCCHHHHHHHHHhcCcC-CHHHHHHHHHHH---HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCc
Q 046312 277 ------KCGAVGCARLLFSRMEEI-NVWTWSAMILGL---AQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGM 346 (514)
Q Consensus 277 ------~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~---~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 346 (514)
..+..+...+...+.... .-..|-+-+.++ ..-|+.+++.-.|-+-. |-.|- |..=+..|...=.
T Consensus 279 a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~kf--g~kpc---c~~Dl~~yl~~l~ 353 (932)
T KOG2053|consen 279 AEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLSYYFKKF--GDKPC---CAIDLNHYLGHLN 353 (932)
T ss_pred chhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHHHHHHHh--CCCcH---hHhhHHHhhccCC
Confidence 112222333322222211 112222222332 34577777655553322 32332 1111112222222
Q ss_pred HHHHHHHHHHHHHhhCCCCchH-------HHHHHHHHHHhcCC-----HHHHHHHHHhCC------------CCCC----
Q 046312 347 VEDGYRYFHEMEHVHGIKPMRI-------HYHTMADILARAGH-----LKEAYTFIMNMP------------FQPN---- 398 (514)
Q Consensus 347 ~~~a~~~~~~~~~~~~~~p~~~-------~~~~li~~~~~~g~-----~~~A~~~~~~~~------------~~p~---- 398 (514)
.+.-..++..... ..++.. -+...+..-.-.|. -+....++.+.. .-|.
T Consensus 354 ~~q~~~l~~~l~~---~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~ 430 (932)
T KOG2053|consen 354 IDQLKSLMSKLVL---ADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSF 430 (932)
T ss_pred HHHHHHHHHHhhc---cCCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhcccccccccccccccc
Confidence 2222333333221 111111 01111111111121 111122221110 1111
Q ss_pred -----HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 046312 399 -----PIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNVGLK 468 (514)
Q Consensus 399 -----~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 468 (514)
..+.+.|+..+.+.++...+-+|.-+++......|.+...-..|+++|.-.|-...|.+.++.+--++++
T Consensus 431 g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ 505 (932)
T KOG2053|consen 431 GDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQ 505 (932)
T ss_pred HHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhh
Confidence 1344667788888888555556666677777777888777778999999999999999999888766664
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=7.7e-06 Score=66.59 Aligned_cols=94 Identities=10% Similarity=-0.081 Sum_probs=62.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 046312 370 YHTMADILARAGHLKEAYTFIMNMP-FQP-NPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYA 447 (514)
Q Consensus 370 ~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 447 (514)
+..+...+...|++++|...|+... ..| +...|..+...+...|+ +++|...++.+.+++|+++.++..++.++.
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~---~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~ 103 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKE---YTTAINFYGHALMLDASHPEPVYQTGVCLK 103 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhh---HHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 3344555666677777777776654 333 55666666666777777 777777777777777777777777777777
Q ss_pred hcCCHHHHHHHHHHHHhCC
Q 046312 448 EVGMWEKVSNVRRFMKNVG 466 (514)
Q Consensus 448 ~~g~~~~A~~~~~~m~~~~ 466 (514)
..|++++|...+++.....
T Consensus 104 ~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 104 MMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred HcCCHHHHHHHHHHHHHhC
Confidence 7777777777777665543
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.39 E-value=0.0002 Score=61.86 Aligned_cols=170 Identities=11% Similarity=0.066 Sum_probs=112.7
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCcC-
Q 046312 216 GYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEEI- 294 (514)
Q Consensus 216 ~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~- 294 (514)
++.+.+......-+......-...|++.|++++|.+..+... +......=+..+.+..+.+-|.+.++.|.+.
T Consensus 94 ~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id 167 (299)
T KOG3081|consen 94 SLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQID 167 (299)
T ss_pred HHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 344444444434443444444556777888888887766521 2333333345566777888888888888874
Q ss_pred CHHHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHH
Q 046312 295 NVWTWSAMILGLAQ----HGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHY 370 (514)
Q Consensus 295 ~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~ 370 (514)
+..+.+.|..++.+ .+.+.+|.-+|++|-++ ..|+..+.+....++...|++++|..+++....+. ..+..+.
T Consensus 168 ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd--~~dpetL 244 (299)
T KOG3081|consen 168 EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD--AKDPETL 244 (299)
T ss_pred hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc--CCCHHHH
Confidence 44566667666654 45688899999999875 67888999999999999999999999999998752 3345555
Q ss_pred HHHHHHHHhcCCHHH-HHHHHHhCC
Q 046312 371 HTMADILARAGHLKE-AYTFIMNMP 394 (514)
Q Consensus 371 ~~li~~~~~~g~~~~-A~~~~~~~~ 394 (514)
..+|..-...|...+ ..+.+.+..
T Consensus 245 ~Nliv~a~~~Gkd~~~~~r~l~QLk 269 (299)
T KOG3081|consen 245 ANLIVLALHLGKDAEVTERNLSQLK 269 (299)
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHH
Confidence 555555555565444 345555554
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.00012 Score=75.78 Aligned_cols=233 Identities=10% Similarity=0.041 Sum_probs=157.1
Q ss_pred CcchHHHHHHHHHcCCCHHHHHHHhhccC--CC-ChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 046312 163 DVYTNNNLVRFYGSCRRKRDACKVFDDMC--ER-SVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSA 239 (514)
Q Consensus 163 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~ 239 (514)
+...+..|+..|...+++++|.++.+... .| ....|-.+...+.+.++.+.+..+ .++..
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l~~ 92 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL-----------------NLIDS 92 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh-----------------hhhhh
Confidence 45678888888888999999988887662 23 333444444466666665555444 22333
Q ss_pred HhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCc---CCHHHHHHHHHHHHHcCChHHHH
Q 046312 240 CTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEE---INVWTWSAMILGLAQHGYAEEAL 316 (514)
Q Consensus 240 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~ 316 (514)
.....++..+..+...+...+ -+...+..+..+|-+.|+.++|...|+++.+ .|+.+.|.+...|... +.++|.
T Consensus 93 ~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~ 169 (906)
T PRK14720 93 FSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAI 169 (906)
T ss_pred cccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHH
Confidence 333344444444555555432 3445777888889999999999999988876 4677888888888888 888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCCCC
Q 046312 317 ELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMPFQ 396 (514)
Q Consensus 317 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 396 (514)
+++.+.... +...+++..+..+|.++... ..-+...+..+.+.....-. ..
T Consensus 170 ~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~--~~~d~d~f~~i~~ki~~~~~------------~~ 220 (906)
T PRK14720 170 TYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHY--NSDDFDFFLRIERKVLGHRE------------FT 220 (906)
T ss_pred HHHHHHHHH---------------HHhhhcchHHHHHHHHHHhc--CcccchHHHHHHHHHHhhhc------------cc
Confidence 888877653 55667888888888888863 22233343333333222211 12
Q ss_pred CCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 046312 397 PNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYA 447 (514)
Q Consensus 397 p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 447 (514)
--+.++-.+-..|...++ ++.+..+++.+.+.+|.|..+..-++.+|.
T Consensus 221 ~~~~~~~~l~~~y~~~~~---~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 221 RLVGLLEDLYEPYKALED---WDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred hhHHHHHHHHHHHhhhhh---hhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 223444556667777788 999999999999999999888888888886
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.00019 Score=66.53 Aligned_cols=232 Identities=15% Similarity=0.066 Sum_probs=104.3
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccC-ChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 046312 197 SWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDE-TTMLVVLSACTELG-NLSLGKWVHLQLIERGTVLNCQLGTALIDM 274 (514)
Q Consensus 197 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~t~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 274 (514)
++..+-..+...+..++|+..+.++++. .|+. ..|..--.++...| +++++...++.+.+.+.+ +..+++...-.
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~ 115 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWL 115 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHH
Confidence 3344444455566667777777766654 2332 23333333333344 345555555555554432 23333333222
Q ss_pred HHhcCCHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 046312 275 YAKCGAVGCARLLFSRMEEINVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYF 354 (514)
Q Consensus 275 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 354 (514)
+.+.|+. ..++++.+++++++.. +-|..+|.....++...|+++++++.+
T Consensus 116 l~~l~~~-----------------------------~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~ 165 (320)
T PLN02789 116 AEKLGPD-----------------------------AANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYC 165 (320)
T ss_pred HHHcCch-----------------------------hhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 3333321 0133444444444321 122334444444444444455555555
Q ss_pred HHHHHhhCCCCchHHHHHHHHHHHhc---CC----HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCC-CcchHHHHH
Q 046312 355 HEMEHVHGIKPMRIHYHTMADILARA---GH----LKEAYTFIMNM-PFQP-NPIVLRALLSASSIHDAK-YQDGVGNEV 424 (514)
Q Consensus 355 ~~~~~~~~~~p~~~~~~~li~~~~~~---g~----~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~-~~~~~a~~~ 424 (514)
+++.+. . .-|...|+.....+.+. |. .+++++...++ ...| |...|+.+...+...+.. .....+.+.
T Consensus 166 ~~~I~~-d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~ 243 (320)
T PLN02789 166 HQLLEE-D-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSV 243 (320)
T ss_pred HHHHHH-C-CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHH
Confidence 554442 1 11223333322222222 11 12334444232 2233 344454444444442210 013445566
Q ss_pred HHHHHhcCCCCCchHHHHHHHHHhcC------------------CHHHHHHHHHHHH
Q 046312 425 RRRLLELEPRGSQNLVIVANKYAEVG------------------MWEKVSNVRRFMK 463 (514)
Q Consensus 425 ~~~~~~~~p~~~~~~~~l~~~~~~~g------------------~~~~A~~~~~~m~ 463 (514)
+..+.+.+|+.+.+...|++.|+... ..++|.++++.+.
T Consensus 244 ~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 244 CLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred HHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH
Confidence 66666666666666667777776532 3467888888883
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.36 E-value=4.7e-05 Score=68.21 Aligned_cols=183 Identities=16% Similarity=0.038 Sum_probs=115.9
Q ss_pred CCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCC--chhHHHHHHHHHHhcCCHHHHHHHHHhcCc--CC-H---HH
Q 046312 227 EPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVL--NCQLGTALIDMYAKCGAVGCARLLFSRMEE--IN-V---WT 298 (514)
Q Consensus 227 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~---~~ 298 (514)
......+..+...+...|+++.|...++++....... ....+..+..+|...|++++|...++++.+ |+ . ..
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 3455677788888999999999999999998875321 124677888999999999999999999875 32 2 24
Q ss_pred HHHHHHHHHHc--------CChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHH
Q 046312 299 WSAMILGLAQH--------GYAEEALELFSNMKNSSISPNYV-TFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIH 369 (514)
Q Consensus 299 ~~~li~~~~~~--------~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~ 369 (514)
+..+..++... |+.++|.+.++++.+. .|+.. ....+... .. . ..... ..
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~-~~---~------~~~~~---------~~ 168 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRM-DY---L------RNRLA---------GK 168 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHH-HH---H------HHHHH---------HH
Confidence 55555566654 7889999999999875 44432 22211110 00 0 00000 00
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCC-CCC----CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCC
Q 046312 370 YHTMADILARAGHLKEAYTFIMNMP-FQP----NPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEP 433 (514)
Q Consensus 370 ~~~li~~~~~~g~~~~A~~~~~~~~-~~p----~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p 433 (514)
...+...+.+.|++++|...+++.. ..| ....+..+..++...|+ .++|...++.+....|
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~---~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGL---KDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCC
Confidence 1134455666677777776666653 222 23556666666777777 6666666665554433
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.0016 Score=66.49 Aligned_cols=176 Identities=10% Similarity=0.005 Sum_probs=110.2
Q ss_pred HHHHHHHHhcCc---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 046312 282 GCARLLFSRMEE---INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEME 358 (514)
Q Consensus 282 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 358 (514)
..|+..+.+..+ .+..+|+.|.-. ...|.+.-+...|-+-... .+.+..+|..+.-.|.+..+++.|...|....
T Consensus 800 ~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~W~NlgvL~l~n~d~E~A~~af~~~q 877 (1238)
T KOG1127|consen 800 CTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQ 877 (1238)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhheeccceeEEecccHHHhhHHHHhhh
Confidence 356666665543 566777776554 5556677777666655543 23445667667667778889999999988886
Q ss_pred HhhCCCCc-hHHHHHHHHHHHhcCCHHHHHHHHHhC-----C--CCCCHHHHHHHHHHHHhcCCC-------CcchHHHH
Q 046312 359 HVHGIKPM-RIHYHTMADILARAGHLKEAYTFIMNM-----P--FQPNPIVLRALLSASSIHDAK-------YQDGVGNE 423 (514)
Q Consensus 359 ~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-----~--~~p~~~~~~~l~~~~~~~~~~-------~~~~~a~~ 423 (514)
.+.|+ ...|-.........|+.-++..+|..- . -.|+..-|-+...-...+|+. .+...|.-
T Consensus 878 ---SLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~ 954 (1238)
T KOG1127|consen 878 ---SLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASL 954 (1238)
T ss_pred ---hcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHH
Confidence 44564 455554444455678888888888652 1 223333333333333344430 01333444
Q ss_pred HHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHH
Q 046312 424 VRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFM 462 (514)
Q Consensus 424 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 462 (514)
+++....-.|+...+|...+....+.+.+.+|.+...+.
T Consensus 955 al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rl 993 (1238)
T KOG1127|consen 955 ALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRL 993 (1238)
T ss_pred HHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 555556667888888888888888888888888877765
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.0033 Score=59.97 Aligned_cols=78 Identities=6% Similarity=-0.006 Sum_probs=47.2
Q ss_pred hhhhHHHHHHHhhcC--hhHHHHHHHHHHHhCCCCChHHHHHHHHhcccCCCCChHHHHHHHcccCC-CCCcccHHHHHH
Q 046312 26 SKARQCLSFLKLCCS--KKHLYQIHAQIQVSGLQNDAQILKELVRFCTLSSSKNLTYARSILCNYVN-DSVPIPWNNLIR 102 (514)
Q Consensus 26 ~~~~~~~~ll~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~li~ 102 (514)
-+..+...+++..+. ....+...+++.. -++-.+..|..-|..-. +..+++...++|.+... .-++..|...|+
T Consensus 18 ~di~sw~~lire~qt~~~~~~R~~YEq~~~-~FP~s~r~W~~yi~~El--~skdfe~VEkLF~RCLvkvLnlDLW~lYl~ 94 (656)
T KOG1914|consen 18 YDIDSWSQLIREAQTQPIDKVRETYEQLVN-VFPSSPRAWKLYIEREL--ASKDFESVEKLFSRCLVKVLNLDLWKLYLS 94 (656)
T ss_pred ccHHHHHHHHHHHccCCHHHHHHHHHHHhc-cCCCCcHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHHhhHhHHHHHHH
Confidence 355666677776643 3444566665543 23445577777777766 77788888888877542 335566666665
Q ss_pred HHHh
Q 046312 103 GYAW 106 (514)
Q Consensus 103 ~~~~ 106 (514)
.-.+
T Consensus 95 YVR~ 98 (656)
T KOG1914|consen 95 YVRE 98 (656)
T ss_pred HHHH
Confidence 5433
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.00053 Score=63.66 Aligned_cols=174 Identities=11% Similarity=0.085 Sum_probs=92.2
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHcCCCCCcc-hHHHHHHHHhccC-CchHHHHHHHHHHHhCCCCCcchHHHHHHHHHc
Q 046312 99 NLIRGYAWSDRPREAVWVFIDMKRRGIKPTEF-TYPFVLKACAEIS-GLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGS 176 (514)
Q Consensus 99 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 176 (514)
.+-..+...++.++|+.+++++.+. .|+.. .|+..-.++...| ++++++..++++.+.. +.+..+|+....++.+
T Consensus 42 ~~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~ 118 (320)
T PLN02789 42 YFRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEK 118 (320)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHH
Confidence 3344445566677777777776663 34333 3444444455555 4567777777776654 3344455555444445
Q ss_pred CCCH--HHHHHHhhccC---CCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc---CCh--
Q 046312 177 CRRK--RDACKVFDDMC---ERSVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTEL---GNL-- 246 (514)
Q Consensus 177 ~~~~--~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~---g~~-- 246 (514)
.|+. +++..+++++. ..|..+|+...-++.+.|+++++++.++++++.+. -|...|+.....+.+. |..
T Consensus 119 l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~-~N~sAW~~R~~vl~~~~~l~~~~~ 197 (320)
T PLN02789 119 LGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV-RNNSAWNQRYFVITRSPLLGGLEA 197 (320)
T ss_pred cCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC-CchhHHHHHHHHHHhccccccccc
Confidence 5542 45566665552 23555666666666666777777777777776652 2444444444333332 111
Q ss_pred --HHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 046312 247 --SLGKWVHLQLIERGTVLNCQLGTALIDMYAK 277 (514)
Q Consensus 247 --~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 277 (514)
+....+...++...+ -|...|+-+...+..
T Consensus 198 ~~e~el~y~~~aI~~~P-~N~SaW~Yl~~ll~~ 229 (320)
T PLN02789 198 MRDSELKYTIDAILANP-RNESPWRYLRGLFKD 229 (320)
T ss_pred cHHHHHHHHHHHHHhCC-CCcCHHHHHHHHHhc
Confidence 234444444444432 244455444444444
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.4e-05 Score=65.09 Aligned_cols=122 Identities=10% Similarity=0.023 Sum_probs=82.2
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC-C
Q 046312 317 ELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP-F 395 (514)
Q Consensus 317 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~ 395 (514)
.++++.++ +.|+. +..+..++...|++++|...|+..... -+.+...|..+..++.+.|++++|...|+++. .
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVMA--QPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 34444444 23443 334556667778888888888777643 12346667777777788888888888887775 3
Q ss_pred -CCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 046312 396 -QPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYA 447 (514)
Q Consensus 396 -~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 447 (514)
+.+...+..+..++...|+ .++|...++.+.+..|+++..+...+.+..
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~---~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGE---PGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 3356777777777778888 888888888888888887776665555443
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.00026 Score=60.70 Aligned_cols=131 Identities=18% Similarity=0.262 Sum_probs=95.6
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHH
Q 046312 307 AQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEA 386 (514)
Q Consensus 307 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 386 (514)
-..|++++|+++++.+++.. +.|..++-.=+...-..|+.-.|++-+.+..+ .+..|...|.-+...|...|+++.|
T Consensus 97 Ea~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA 173 (289)
T KOG3060|consen 97 EATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKA 173 (289)
T ss_pred HHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHH
Confidence 34677888888888887765 44556665555555566777788887887777 4577888888888889999999999
Q ss_pred HHHHHhCC-CCC-CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHH
Q 046312 387 YTFIMNMP-FQP-NPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLV 440 (514)
Q Consensus 387 ~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 440 (514)
.-.++++. ..| +...+..+...+...|.-.+++.+.+.+..+.++.|.+...+.
T Consensus 174 ~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~ 229 (289)
T KOG3060|consen 174 AFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALF 229 (289)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHH
Confidence 88888886 555 4555666666666666656688888888888888886544333
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.00065 Score=58.77 Aligned_cols=156 Identities=15% Similarity=0.038 Sum_probs=107.6
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCc---CCHHHHHHHHHHHHHcC
Q 046312 234 LVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEE---INVWTWSAMILGLAQHG 310 (514)
Q Consensus 234 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~ 310 (514)
..+-..+...|+-+....+........ ..+......++....+.|++..|...|.+... +|...|+.+.-+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHcc
Confidence 445555666666666666655543322 23445555677777888888888888887765 56778888888888888
Q ss_pred ChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHH
Q 046312 311 YAEEALELFSNMKNSSISPN-YVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTF 389 (514)
Q Consensus 311 ~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 389 (514)
+++.|..-|.+..+. .|+ ...++.+.-.+.-.|+.+.|..++...... -.-|..+-..+.......|++++|.++
T Consensus 149 r~~~Ar~ay~qAl~L--~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~--~~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 149 RFDEARRAYRQALEL--APNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS--PAADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred ChhHHHHHHHHHHHh--ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC--CCCchHHHHHHHHHHhhcCChHHHHhh
Confidence 888888888887773 333 455666666677778888888888877752 233566667777777788888888877
Q ss_pred HHhCC
Q 046312 390 IMNMP 394 (514)
Q Consensus 390 ~~~~~ 394 (514)
...-.
T Consensus 225 ~~~e~ 229 (257)
T COG5010 225 AVQEL 229 (257)
T ss_pred ccccc
Confidence 76554
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.00019 Score=73.59 Aligned_cols=160 Identities=12% Similarity=0.006 Sum_probs=119.3
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCc-hHHHH
Q 046312 294 INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNY-VTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPM-RIHYH 371 (514)
Q Consensus 294 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~ 371 (514)
.++..+..|.....+.|++++|..+++...+ +.|+. .....+..++.+.+++++|....++.... .|+ .....
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~---~p~~~~~~~ 158 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG---GSSSAREIL 158 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc---CCCCHHHHH
Confidence 3477788888888889999999999998887 46664 45666778888889999999988888853 555 55566
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhc
Q 046312 372 TMADILARAGHLKEAYTFIMNMP-FQPN-PIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEV 449 (514)
Q Consensus 372 ~li~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 449 (514)
.+..++.+.|++++|.++|+++. ..|+ ..++..+...+...|+ .++|..+++.+.+...+....|..++
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~---~~~A~~~~~~a~~~~~~~~~~~~~~~------ 229 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGA---LWRARDVLQAGLDAIGDGARKLTRRL------ 229 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhhCcchHHHHHHH------
Confidence 77778888999999999998886 3444 6788888888888899 99999999988887765554444222
Q ss_pred CCHHHHHHHHHHHHhCCC
Q 046312 450 GMWEKVSNVRRFMKNVGL 467 (514)
Q Consensus 450 g~~~~A~~~~~~m~~~~~ 467 (514)
++...-..+++++...+.
T Consensus 230 ~~~~~~~~~~~~~~~~~~ 247 (694)
T PRK15179 230 VDLNADLAALRRLGVEGD 247 (694)
T ss_pred HHHHHHHHHHHHcCcccc
Confidence 344555566666654433
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.00019 Score=61.99 Aligned_cols=150 Identities=9% Similarity=0.004 Sum_probs=70.5
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCH
Q 046312 304 LGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHL 383 (514)
Q Consensus 304 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 383 (514)
..+...|+-+....+....... ..-|.......+....+.|++..|...+.+... .-++|...|+.+.-+|.+.|++
T Consensus 74 ~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq~Gr~ 150 (257)
T COG5010 74 TALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQLGRF 150 (257)
T ss_pred HHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHHccCh
Confidence 3344444444444444443221 112222333344444455555555555555543 3344455555555555555555
Q ss_pred HHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHH
Q 046312 384 KEAYTFIMNMP--FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVR 459 (514)
Q Consensus 384 ~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 459 (514)
++|..-+.+.. ...+...++.+.-.+.-.|+ .+.|+..+.......+.+..+-..|..+....|++++|..+.
T Consensus 151 ~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd---~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 151 DEARRAYRQALELAPNEPSIANNLGMSLLLRGD---LEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred hHHHHHHHHHHHhccCCchhhhhHHHHHHHcCC---HHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 55555554443 22233444444445555555 555555555555544444444445555555555555555443
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.23 E-value=2.1e-06 Score=50.68 Aligned_cols=35 Identities=37% Similarity=0.621 Sum_probs=29.0
Q ss_pred ccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCc
Q 046312 95 IPWNNLIRGYAWSDRPREAVWVFIDMKRRGIKPTE 129 (514)
Q Consensus 95 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 129 (514)
.+||.+|.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 36888888888888888888888888888888873
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00026 Score=61.05 Aligned_cols=150 Identities=13% Similarity=0.123 Sum_probs=88.1
Q ss_pred HHHHhcCCHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHH
Q 046312 273 DMYAKCGAVGCARLLFSRMEEINVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYR 352 (514)
Q Consensus 273 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~ 352 (514)
-.|...|+++.+....+.+..+. ..+...++.+++...++...+.. +.|...|..+...|...|+++.|..
T Consensus 24 ~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~ 94 (198)
T PRK10370 24 GSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALL 94 (198)
T ss_pred HHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 45566666665544433322211 01112455566666666655542 3445566666677777777777777
Q ss_pred HHHHHHHhhCCCC-chHHHHHHHHHH-HhcCC--HHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCCCcchHHHHHHH
Q 046312 353 YFHEMEHVHGIKP-MRIHYHTMADIL-ARAGH--LKEAYTFIMNMP-FQP-NPIVLRALLSASSIHDAKYQDGVGNEVRR 426 (514)
Q Consensus 353 ~~~~~~~~~~~~p-~~~~~~~li~~~-~~~g~--~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~~~~a~~~~~ 426 (514)
.|++..+. .| +...+..+..++ .+.|+ .++|.+++++.. ..| +...+..+...+...|+ +++|...++
T Consensus 95 a~~~Al~l---~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~---~~~Ai~~~~ 168 (198)
T PRK10370 95 AYRQALQL---RGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQAD---YAQAIELWQ 168 (198)
T ss_pred HHHHHHHh---CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCC---HHHHHHHHH
Confidence 77777643 33 355555666543 45565 477777777765 333 45666666677777777 777777777
Q ss_pred HHHhcCCCCCc
Q 046312 427 RLLELEPRGSQ 437 (514)
Q Consensus 427 ~~~~~~p~~~~ 437 (514)
++.+..|.+.+
T Consensus 169 ~aL~l~~~~~~ 179 (198)
T PRK10370 169 KVLDLNSPRVN 179 (198)
T ss_pred HHHhhCCCCcc
Confidence 77777665543
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.19 E-value=8.9e-05 Score=70.16 Aligned_cols=125 Identities=11% Similarity=0.016 Sum_probs=104.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 046312 266 QLGTALIDMYAKCGAVGCARLLFSRMEEINVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAG 345 (514)
Q Consensus 266 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 345 (514)
.....|+..+...++++.|+++|+++.+.++.....++..+...++-.+|.+++.+.+... +-+...+..-...|...+
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 3445677777788899999999999988777777778888888899999999999998642 335556666667788999
Q ss_pred cHHHHHHHHHHHHHhhCCCCc-hHHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 046312 346 MVEDGYRYFHEMEHVHGIKPM-RIHYHTMADILARAGHLKEAYTFIMNMP 394 (514)
Q Consensus 346 ~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~ 394 (514)
+++.|..+.+++... .|+ ..+|..|..+|.+.|++++|+..++.++
T Consensus 249 ~~~lAL~iAk~av~l---sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 249 KYELALEIAKKAVEL---SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CHHHHHHHHHHHHHh---CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 999999999999853 666 6699999999999999999999999998
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.00046 Score=70.78 Aligned_cols=142 Identities=12% Similarity=0.055 Sum_probs=104.0
Q ss_pred CCcccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcc-hHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHH
Q 046312 92 SVPIPWNNLIRGYAWSDRPREAVWVFIDMKRRGIKPTEF-TYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNL 170 (514)
Q Consensus 92 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 170 (514)
.++..+-.|..+..+.|++++|..+++...+. .||.. ....+..++.+.+++++|....++..... +-+......+
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~ 160 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLE 160 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHH
Confidence 34667778888888888888888888888774 56554 56667778888888888888888887764 3355666777
Q ss_pred HHHHHcCCCHHHHHHHhhccCCC---ChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 046312 171 VRFYGSCRRKRDACKVFDDMCER---SVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVL 237 (514)
Q Consensus 171 i~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll 237 (514)
..++.+.|++++|..+|+++..+ +..++..+..++.+.|+.++|...|++..+.- .|....|+..+
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~ 229 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL 229 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH
Confidence 77788888888888888888533 25577777777888888888888888877652 34445554443
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.17 E-value=2.9e-06 Score=49.62 Aligned_cols=33 Identities=36% Similarity=0.639 Sum_probs=25.7
Q ss_pred ccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCC
Q 046312 95 IPWNNLIRGYAWSDRPREAVWVFIDMKRRGIKP 127 (514)
Q Consensus 95 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 127 (514)
.+||.+|.+|++.|+++.|.++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467788888888888888888888887777766
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.14 E-value=4.7e-06 Score=49.07 Aligned_cols=33 Identities=30% Similarity=0.476 Sum_probs=28.6
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC
Q 046312 197 SWNVIITVCVENLWLGEAVGYFVKMKDLGFEPD 229 (514)
Q Consensus 197 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 229 (514)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 688888888888888888888888888888887
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.10 E-value=6.1e-06 Score=48.21 Aligned_cols=33 Identities=24% Similarity=0.469 Sum_probs=26.0
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC
Q 046312 196 VSWNVIITVCVENLWLGEAVGYFVKMKDLGFEP 228 (514)
Q Consensus 196 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 228 (514)
.+|+.++.+|.+.|+++.|.++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467888888888888888888888888877776
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.10 E-value=5.6e-05 Score=61.05 Aligned_cols=94 Identities=13% Similarity=0.069 Sum_probs=58.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 046312 369 HYHTMADILARAGHLKEAYTFIMNMP--FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKY 446 (514)
Q Consensus 369 ~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 446 (514)
....+...+.+.|++++|.+.|+.+. .+.+...+..+...+...|+ ++.|...++.+.+.+|+++..+..++.+|
T Consensus 19 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~---~~~A~~~~~~~~~~~p~~~~~~~~la~~~ 95 (135)
T TIGR02552 19 QIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKE---YEEAIDAYALAAALDPDDPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 34445555666666666666666653 22244555556666666666 66666666666666666666666666666
Q ss_pred HhcCCHHHHHHHHHHHHhC
Q 046312 447 AEVGMWEKVSNVRRFMKNV 465 (514)
Q Consensus 447 ~~~g~~~~A~~~~~~m~~~ 465 (514)
...|++++|...+++..+.
T Consensus 96 ~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 96 LALGEPESALKALDLAIEI 114 (135)
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 6777777777766666554
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.08 E-value=5.9e-05 Score=71.33 Aligned_cols=117 Identities=14% Similarity=0.137 Sum_probs=62.2
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCC
Q 046312 100 LIRGYAWSDRPREAVWVFIDMKRRGIKPTEFTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRR 179 (514)
Q Consensus 100 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 179 (514)
|+..+...++++.|+++|+++.+.. |+ ....+++.+...++-.+|.+++++..+.. +-+......-...+.+.++
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 3444444555666666666655542 32 23335555555555556666665555432 2233444444455556666
Q ss_pred HHHHHHHhhccCC--C-ChhhHHHHHHHHHhCCChhHHHHHHHHH
Q 046312 180 KRDACKVFDDMCE--R-SVVSWNVIITVCVENLWLGEAVGYFVKM 221 (514)
Q Consensus 180 ~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m 221 (514)
++.|..+.++..+ | +..+|..|..+|.+.|+++.|+..++.+
T Consensus 250 ~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 250 YELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 6666666665521 2 3446666666666666666666665554
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.014 Score=59.25 Aligned_cols=60 Identities=12% Similarity=0.126 Sum_probs=32.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCceeEEEECCeEEEEEecccCCcChHHHHHHHHHHH
Q 046312 441 IVANKYAEVGMWEKVSNVRRFMKNVGLKKMKGMSWVELGGSIHRFYSGYDSQVELAGIYQILETLN 506 (514)
Q Consensus 441 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~ 506 (514)
.|++.+.+.++.....+.+--+ +.|+...++-.-. + =.++..|.--|-+..|+++|+.|-
T Consensus 441 ~Lid~~rktnd~~~l~eaI~LL-E~glt~s~hnf~~----K-LlLiriY~~lGa~p~a~~~y~tLd 500 (932)
T KOG2053|consen 441 HLIDLWRKTNDLTDLFEAITLL-ENGLTKSPHNFQT----K-LLLIRIYSYLGAFPDAYELYKTLD 500 (932)
T ss_pred HHHHHHHhcCcHHHHHHHHHHH-HHHhhcCCccHHH----H-HHHHHHHHHhcCChhHHHHHHhcc
Confidence 6778888888876333322221 3343322221100 0 024566666788888888887653
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00011 Score=59.07 Aligned_cols=96 Identities=9% Similarity=-0.057 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHH
Q 046312 368 IHYHTMADILARAGHLKEAYTFIMNMP-FQP-NPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANK 445 (514)
Q Consensus 368 ~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 445 (514)
...-.+..-+...|++++|..+|+-.. ..| +...|..|.-.+...|+ +++|...+..+..++|+++.++..++.+
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~---~~~AI~aY~~A~~L~~ddp~~~~~ag~c 112 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKH---WGEAIYAYGRAAQIKIDAPQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhh---HHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 344456666778999999999999886 344 66778889999999999 9999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHhCC
Q 046312 446 YAEVGMWEKVSNVRRFMKNVG 466 (514)
Q Consensus 446 ~~~~g~~~~A~~~~~~m~~~~ 466 (514)
+...|+.+.|.+.|+......
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHcCCHHHHHHHHHHHHHHh
Confidence 999999999999999887543
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0054 Score=52.87 Aligned_cols=115 Identities=13% Similarity=0.074 Sum_probs=53.1
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 046312 208 NLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLL 287 (514)
Q Consensus 208 ~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 287 (514)
.|++++|+++|+...+.+ +-|.+++..-+...-..|+--+|.+-+....+.- ..|...|.-+.+.|...|++++|.-.
T Consensus 99 ~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F-~~D~EAW~eLaeiY~~~~~f~kA~fC 176 (289)
T KOG3060|consen 99 TGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKF-MNDQEAWHELAEIYLSEGDFEKAAFC 176 (289)
T ss_pred hhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHhHhHHHHHHHH
Confidence 344455555555544443 3333444444444444444444444444444432 23555555555555555555555555
Q ss_pred HHhcC--cC-CHHHHHHHHHHHHHcC---ChHHHHHHHHHHHH
Q 046312 288 FSRME--EI-NVWTWSAMILGLAQHG---YAEEALELFSNMKN 324 (514)
Q Consensus 288 ~~~~~--~~-~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~ 324 (514)
++++. +| +...+..+...+.-.| +.+-+..+|.+.++
T Consensus 177 lEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 177 LEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALK 219 (289)
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 55543 22 2333333333332222 34455666666555
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00045 Score=56.41 Aligned_cols=88 Identities=13% Similarity=0.126 Sum_probs=48.2
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHh
Q 046312 302 MILGLAQHGYAEEALELFSNMKNSSISPN--YVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILAR 379 (514)
Q Consensus 302 li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 379 (514)
+...+...|++++|...|+........|+ ......+...+...|++++|...++.... -......+....+.|.+
T Consensus 54 lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~---~~~~~~~~~~~Gdi~~~ 130 (145)
T PF09976_consen 54 LAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPD---EAFKALAAELLGDIYLA 130 (145)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccC---cchHHHHHHHHHHHHHH
Confidence 34455666666666666666666542222 12233345556666666666666655332 12233345555666666
Q ss_pred cCCHHHHHHHHHh
Q 046312 380 AGHLKEAYTFIMN 392 (514)
Q Consensus 380 ~g~~~~A~~~~~~ 392 (514)
.|++++|...|++
T Consensus 131 ~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 131 QGDYDEARAAYQK 143 (145)
T ss_pred CCCHHHHHHHHHH
Confidence 6666666666654
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.0012 Score=54.00 Aligned_cols=122 Identities=10% Similarity=-0.018 Sum_probs=58.1
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCc--hhHHHHHH
Q 046312 198 WNVIITVCVENLWLGEAVGYFVKMKDLGFEPD---ETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLN--CQLGTALI 272 (514)
Q Consensus 198 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li 272 (514)
|..++..+ ..++...+...++.+.+.. +.+ ......+...+...|++++|...|+.+......++ ......+.
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 33344433 3556666666666665542 111 12222233445556666666666666665542222 11223344
Q ss_pred HHHHhcCCHHHHHHHHHhcCcC--CHHHHHHHHHHHHHcCChHHHHHHHHH
Q 046312 273 DMYAKCGAVGCARLLFSRMEEI--NVWTWSAMILGLAQHGYAEEALELFSN 321 (514)
Q Consensus 273 ~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~ 321 (514)
..+...|++++|+..++....+ ....+......|.+.|++++|...|+.
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 5555555555555555443321 223333444455555555555555543
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00045 Score=55.72 Aligned_cols=98 Identities=7% Similarity=-0.043 Sum_probs=55.2
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHh
Q 046312 334 FLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP--FQPNPIVLRALLSASSI 411 (514)
Q Consensus 334 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~ 411 (514)
...+...+...|++++|...++.+... -+.+...+..+...+.+.|++++|...+++.. .+.+...+..+...+..
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 344445555566666666666665542 12244555556666666666666666665553 22234555555556666
Q ss_pred cCCCCcchHHHHHHHHHHhcCCCCC
Q 046312 412 HDAKYQDGVGNEVRRRLLELEPRGS 436 (514)
Q Consensus 412 ~~~~~~~~~a~~~~~~~~~~~p~~~ 436 (514)
.|+ .+.|...++.+.+..|++.
T Consensus 98 ~g~---~~~A~~~~~~al~~~p~~~ 119 (135)
T TIGR02552 98 LGE---PESALKALDLAIEICGENP 119 (135)
T ss_pred cCC---HHHHHHHHHHHHHhccccc
Confidence 666 6666666666666666554
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0002 Score=68.06 Aligned_cols=123 Identities=12% Similarity=0.106 Sum_probs=105.1
Q ss_pred HhCCCCChHHHHHHHHhcccCCCCChHHHHHHHcccCCCCC-----cccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCC
Q 046312 53 VSGLQNDAQILKELVRFCTLSSSKNLTYARSILCNYVNDSV-----PIPWNNLIRGYAWSDRPREAVWVFIDMKRRGIKP 127 (514)
Q Consensus 53 ~~g~~~~~~~~~~ll~~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 127 (514)
.++..-+......+++.+. ...+++++..++-+....|+ +.+..++|+.|.+.|..+.++.+++.=...|+=|
T Consensus 59 ~~~~~vS~~dld~fvn~~~--~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~ 136 (429)
T PF10037_consen 59 ERKKPVSSLDLDIFVNNVE--SKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFP 136 (429)
T ss_pred hcCCCCcHHHHHHHHhhcC--CHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCC
Confidence 3455667788889999998 88899999999988864332 2466799999999999999999999999999999
Q ss_pred CcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcC
Q 046312 128 TEFTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSC 177 (514)
Q Consensus 128 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 177 (514)
|..+++.||+.+.+.|++..|.++..+|...+...+..|+..-+.+|.+.
T Consensus 137 D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 137 DNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred ChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999999999999999998888777777777767776666
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.83 E-value=2.3e-05 Score=44.57 Aligned_cols=31 Identities=42% Similarity=0.683 Sum_probs=22.6
Q ss_pred ccHHHHHHHHHhCCCchHHHHHHHHHHHcCC
Q 046312 95 IPWNNLIRGYAWSDRPREAVWVFIDMKRRGI 125 (514)
Q Consensus 95 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 125 (514)
++||.+|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3677777777777777777777777777653
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00092 Score=59.40 Aligned_cols=108 Identities=15% Similarity=0.131 Sum_probs=95.5
Q ss_pred CCchHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHH
Q 046312 364 KPMRIHYHTMADILARAGHLKEAYTFIMNMP--FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVI 441 (514)
Q Consensus 364 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 441 (514)
+-|...|..|...|...|+.+.|..-|.+.. ..++...+..+..++....+.....++.++++++...+|.+..+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 4568899999999999999999999999885 44577888888888887777777899999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCC
Q 046312 442 VANKYAEVGMWEKVSNVRRFMKNVGLKKMK 471 (514)
Q Consensus 442 l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 471 (514)
|+..+...|++.+|...|+.|.+......+
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 999999999999999999999987654443
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.032 Score=51.83 Aligned_cols=110 Identities=15% Similarity=0.154 Sum_probs=77.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcH
Q 046312 268 GTALIDMYAKCGAVGCARLLFSRMEEINVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMV 347 (514)
Q Consensus 268 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 347 (514)
.+..+.-+...|+...|.++-.+..-|+-..|-..+.+++..++|++-..+... +-++..|..++.+|.+.|+.
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~ 253 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNK 253 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCH
Confidence 344455566778888888887777778888888888888888888876665432 12336677788888888888
Q ss_pred HHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 046312 348 EDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP 394 (514)
Q Consensus 348 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 394 (514)
.+|..+...+. +..-+..|.++|++.+|.+.-.+..
T Consensus 254 ~eA~~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~~~k 289 (319)
T PF04840_consen 254 KEASKYIPKIP-----------DEERVEMYLKCGDYKEAAQEAFKEK 289 (319)
T ss_pred HHHHHHHHhCC-----------hHHHHHHHHHCCCHHHHHHHHHHcC
Confidence 88877766522 2345667778888888877766655
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00029 Score=52.33 Aligned_cols=93 Identities=16% Similarity=0.202 Sum_probs=71.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 046312 370 YHTMADILARAGHLKEAYTFIMNMP-FQP-NPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYA 447 (514)
Q Consensus 370 ~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 447 (514)
+..+...+...|++++|...++++. ..| +...+..+...+...++ ++.|.+.++.+.+..|.+...+..++.++.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGK---YEEALEDYEKALELDPDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhCCCcchhHHHHHHHHHH
Confidence 4456667777888888888887764 333 34566667777777788 888888888888888887777888888888
Q ss_pred hcCCHHHHHHHHHHHHhC
Q 046312 448 EVGMWEKVSNVRRFMKNV 465 (514)
Q Consensus 448 ~~g~~~~A~~~~~~m~~~ 465 (514)
..|++++|...+++..+.
T Consensus 80 ~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 80 KLGKYEEALEAYEKALEL 97 (100)
T ss_pred HHHhHHHHHHHHHHHHcc
Confidence 888988888888877643
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00056 Score=50.98 Aligned_cols=81 Identities=15% Similarity=0.147 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHhccC--------cHHHHHHHHHHHHHhhCCCCchH
Q 046312 298 TWSAMILGLAQHGYAEEALELFSNMKNSSI-SPNYVTFLGVLCACNHAG--------MVEDGYRYFHEMEHVHGIKPMRI 368 (514)
Q Consensus 298 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~p~~~ 368 (514)
+....|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ++-..+.+|+.|... +++|+..
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-~lKP~~e 105 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-KLKPNDE 105 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-ccCCcHH
Confidence 344556677777999999999999999999 899999999998877653 355678899999986 8999999
Q ss_pred HHHHHHHHHHh
Q 046312 369 HYHTMADILAR 379 (514)
Q Consensus 369 ~~~~li~~~~~ 379 (514)
+|+.++..+.+
T Consensus 106 tYnivl~~Llk 116 (120)
T PF08579_consen 106 TYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHH
Confidence 99999988765
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.76 E-value=3.7e-05 Score=43.68 Aligned_cols=29 Identities=24% Similarity=0.361 Sum_probs=20.8
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHCC
Q 046312 197 SWNVIITVCVENLWLGEAVGYFVKMKDLG 225 (514)
Q Consensus 197 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 225 (514)
+||+++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 57777777777777777777777777665
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0007 Score=50.47 Aligned_cols=80 Identities=16% Similarity=0.041 Sum_probs=66.9
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHhccC--------ChHHHHHHHHHHHHhCCCCchhHH
Q 046312 198 WNVIITVCVENLWLGEAVGYFVKMKDLGF-EPDETTMLVVLSACTELG--------NLSLGKWVHLQLIERGTVLNCQLG 268 (514)
Q Consensus 198 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~t~~~ll~~~~~~g--------~~~~a~~~~~~~~~~~~~~~~~~~ 268 (514)
-...|..+...+++...-.+|+.++..|+ .|+..+|+.++.+.++.. ++-....+|+.|+..+++|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34456667777999999999999999999 999999999999887643 244567889999999999999999
Q ss_pred HHHHHHHHh
Q 046312 269 TALIDMYAK 277 (514)
Q Consensus 269 ~~li~~~~~ 277 (514)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 999988765
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00067 Score=53.15 Aligned_cols=92 Identities=15% Similarity=0.090 Sum_probs=46.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCC---CchHHHH
Q 046312 371 HTMADILARAGHLKEAYTFIMNMP-FQPN----PIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRG---SQNLVIV 442 (514)
Q Consensus 371 ~~li~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l 442 (514)
..++..+.+.|++++|.+.|+++. ..|+ ...+..+...+...|+ ++.|...++.+....|++ +.++..+
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGK---YADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhcc---HHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 334444555555555555555543 1222 2233444555555555 555555555555555443 2334455
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC
Q 046312 443 ANKYAEVGMWEKVSNVRRFMKNV 465 (514)
Q Consensus 443 ~~~~~~~g~~~~A~~~~~~m~~~ 465 (514)
+.++.+.|++++|...++++.+.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHH
Confidence 55555566666666666555544
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.048 Score=50.62 Aligned_cols=112 Identities=12% Similarity=0.104 Sum_probs=84.2
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 046312 332 VTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMPFQPNPIVLRALLSASSI 411 (514)
Q Consensus 332 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~ 411 (514)
.+.+.-+.-|...|+...|.++-.+. ++ |+...|...+.+|+..|+|++..++... . -.+..|..++..|..
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~F----kv-~dkrfw~lki~aLa~~~~w~eL~~fa~s-k--KsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEF----KV-PDKRFWWLKIKALAENKDWDELEKFAKS-K--KSPIGYEPFVEACLK 249 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHc----CC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC-C--CCCCChHHHHHHHHH
Confidence 34555566677788888776664443 44 8899999999999999999998887654 2 345889999999999
Q ss_pred cCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 046312 412 HDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMK 463 (514)
Q Consensus 412 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 463 (514)
.|+ ..+|..++.+ + .+..-+..|.++|.+.+|.+.--+.+
T Consensus 250 ~~~---~~eA~~yI~k---~------~~~~rv~~y~~~~~~~~A~~~A~~~k 289 (319)
T PF04840_consen 250 YGN---KKEASKYIPK---I------PDEERVEMYLKCGDYKEAAQEAFKEK 289 (319)
T ss_pred CCC---HHHHHHHHHh---C------ChHHHHHHHHHCCCHHHHHHHHHHcC
Confidence 999 6666666665 1 12567888899999999988755544
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0012 Score=51.70 Aligned_cols=95 Identities=13% Similarity=0.058 Sum_probs=41.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCC-C-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCC-chHHHHHHHH
Q 046312 299 WSAMILGLAQHGYAEEALELFSNMKNSSIS-P-NYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKP-MRIHYHTMAD 375 (514)
Q Consensus 299 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~ 375 (514)
+..+...+.+.|++++|...|..+...... + ....+..+..++...|+++.|...++.+...+.-.+ ....+..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 334444455555555555555555443110 0 022333344455555555555555555543211111 1223344444
Q ss_pred HHHhcCCHHHHHHHHHhC
Q 046312 376 ILARAGHLKEAYTFIMNM 393 (514)
Q Consensus 376 ~~~~~g~~~~A~~~~~~~ 393 (514)
++.+.|+.++|...++++
T Consensus 85 ~~~~~~~~~~A~~~~~~~ 102 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQV 102 (119)
T ss_pred HHHHhCChHHHHHHHHHH
Confidence 444555555555555444
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00072 Score=64.44 Aligned_cols=116 Identities=12% Similarity=0.065 Sum_probs=64.3
Q ss_pred CcchHHHHHHHHHcCCCHHHHHHHhhccCC-C-----ChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 046312 163 DVYTNNNLVRFYGSCRRKRDACKVFDDMCE-R-----SVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVV 236 (514)
Q Consensus 163 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~-~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~l 236 (514)
+......+++.+....+++.+..++.+... + -..+..++|+.|.+.|..+.++.+++.=...|+-||..|++.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 333444444444444445555554444411 1 1123346666666666666666666666666666666666666
Q ss_pred HHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 046312 237 LSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKC 278 (514)
Q Consensus 237 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 278 (514)
|..+.+.|++..|.++..+|...+...+..++..-+.++.+.
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 666666666666666666666665555555554444444433
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00033 Score=51.01 Aligned_cols=80 Identities=16% Similarity=0.243 Sum_probs=53.5
Q ss_pred cCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCC-chHHHHHHHHHHHhcCCHHHH
Q 046312 309 HGYAEEALELFSNMKNSSIS-PNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKP-MRIHYHTMADILARAGHLKEA 386 (514)
Q Consensus 309 ~~~~~~a~~~~~~m~~~g~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A 386 (514)
.|+++.|+.+++++.+.... ++...+..+..++.+.|++++|..+++.... .+ +......+..++.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~----~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKL----DPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTH----HHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCC----CCCCHHHHHHHHHHHHHhCCHHHH
Confidence 57788888888888875331 2344455577888888888888888877222 22 234444557788888888888
Q ss_pred HHHHHh
Q 046312 387 YTFIMN 392 (514)
Q Consensus 387 ~~~~~~ 392 (514)
++.|++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 888765
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.073 Score=50.04 Aligned_cols=372 Identities=10% Similarity=0.068 Sum_probs=209.2
Q ss_pred HHHHHHHHHhCCCCChHHHHHHHHhcccCCCCChHHHHHHHcccCCCCCc---ccHHHHHHHHHhCCCchHHHHHHHHHH
Q 046312 45 YQIHAQIQVSGLQNDAQILKELVRFCTLSSSKNLTYARSILCNYVNDSVP---IPWNNLIRGYAWSDRPREAVWVFIDMK 121 (514)
Q Consensus 45 ~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~ 121 (514)
.++.+.+++ -+.|..+|-.||+.|. ..|..++.++.++++. .|-+ .+|..-|++-....++.....+|.+..
T Consensus 29 lrLRerIkd--NPtnI~S~fqLiq~~~--tq~s~~~~re~yeq~~-~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL 103 (660)
T COG5107 29 LRLRERIKD--NPTNILSYFQLIQYLE--TQESMDAEREMYEQLS-SPFPIMEHAWRLYMSGELARKDFRSVESLFGRCL 103 (660)
T ss_pred HHHHHHhhc--CchhHHHHHHHHHHHh--hhhhHHHHHHHHHHhc-CCCccccHHHHHHhcchhhhhhHHHHHHHHHHHH
Confidence 355554443 3457899999999999 9999999999999998 6655 468888888888889999999999987
Q ss_pred HcCCCCCcchHHHHHHHHhccCCch--HH----HHHHHHHH-HhCCCCC-cchHHHHHHHHH---cC------CCHHHHH
Q 046312 122 RRGIKPTEFTYPFVLKACAEISGLN--EG----MQVQANVT-KSGLDSD-VYTNNNLVRFYG---SC------RRKRDAC 184 (514)
Q Consensus 122 ~~~~~p~~~~~~~ll~~~~~~g~~~--~a----~~~~~~~~-~~~~~~~-~~~~~~li~~~~---~~------~~~~~A~ 184 (514)
...+ +...|..-+..-.+.+..- ++ -+.++-.. ..++.|- ...|+..+..+- .. .++|...
T Consensus 104 ~k~l--~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR 181 (660)
T COG5107 104 KKSL--NLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIR 181 (660)
T ss_pred hhhc--cHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 7644 3444555554433332111 11 11222211 2334442 233443333221 11 2233444
Q ss_pred HHhhccCC-C--C---------------------------hhhHH----------HHHHHHHhCC---------------
Q 046312 185 KVFDDMCE-R--S---------------------------VVSWN----------VIITVCVENL--------------- 209 (514)
Q Consensus 185 ~~~~~~~~-~--~---------------------------~~~~~----------~li~~~~~~~--------------- 209 (514)
+.+.++.. | + ...|- .+.+++....
T Consensus 182 ~~Y~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~ 261 (660)
T COG5107 182 NGYMRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSD 261 (660)
T ss_pred HHHHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhcccccccc
Confidence 44444411 1 0 00010 0111110000
Q ss_pred -------------------C--hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHH
Q 046312 210 -------------------W--LGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLG 268 (514)
Q Consensus 210 -------------------~--~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 268 (514)
+ .+...-++++.... +.-....|.---..+...++-+.|.+........ .|+ ..
T Consensus 262 S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~--sps--L~ 336 (660)
T COG5107 262 SNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGIEM--SPS--LT 336 (660)
T ss_pred chhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccC--CCc--hh
Confidence 0 00111111111111 1112222222223344566666666655443322 222 11
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCc---------------------------------CCHHHHHHHHHHHHHcCChHHH
Q 046312 269 TALIDMYAKCGAVGCARLLFSRMEE---------------------------------INVWTWSAMILGLAQHGYAEEA 315 (514)
Q Consensus 269 ~~li~~~~~~g~~~~A~~~~~~~~~---------------------------------~~~~~~~~li~~~~~~~~~~~a 315 (514)
--+...|.-..+-+.....|++..+ .-...|...+..-.+..-.+.|
T Consensus 337 ~~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aa 416 (660)
T COG5107 337 MFLSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAA 416 (660)
T ss_pred eeHHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHH
Confidence 2233333334444444333333210 1224566677777788888899
Q ss_pred HHHHHHHHHCC-CCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHH-HHHHHHHHhcCCHHHHHHHHHhC
Q 046312 316 LELFSNMKNSS-ISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHY-HTMADILARAGHLKEAYTFIMNM 393 (514)
Q Consensus 316 ~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~~ 393 (514)
..+|-+..+.| +.++...+++++..++ .|+...|..+|+--... -||...| +..+..+.+.++-+.|..+|+..
T Consensus 417 R~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~---f~d~~~y~~kyl~fLi~inde~naraLFets 492 (660)
T COG5107 417 RKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK---FPDSTLYKEKYLLFLIRINDEENARALFETS 492 (660)
T ss_pred HHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh---CCCchHHHHHHHHHHHHhCcHHHHHHHHHHh
Confidence 99999998888 6677888888888665 47888888888876654 3554443 45666777888889999999865
Q ss_pred C--CCCC--HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCC
Q 046312 394 P--FQPN--PIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRG 435 (514)
Q Consensus 394 ~--~~p~--~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~ 435 (514)
. +..+ ...|..+|.--..-|+ +..+-.+-+.+.+.-|..
T Consensus 493 v~r~~~~q~k~iy~kmi~YEs~~G~---lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 493 VERLEKTQLKRIYDKMIEYESMVGS---LNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHHHHhhhhHHHHHHHHHHHhhcc---hHHHHhHHHHHHHHcCcH
Confidence 4 2223 4678888888888888 777777777777776654
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.56 E-value=6.1e-05 Score=54.90 Aligned_cols=53 Identities=15% Similarity=0.172 Sum_probs=25.1
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHH
Q 046312 405 LLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRF 461 (514)
Q Consensus 405 l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 461 (514)
+..++...|+ +++|..+++. .+.++.+......++.+|.+.|++++|++++++
T Consensus 31 la~~~~~~~~---y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 31 LAQCYFQQGK---YEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp HHHHHHHTTH---HHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHCCC---HHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 3444444444 4444444444 333333333444556666666666666666554
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0037 Score=57.26 Aligned_cols=133 Identities=11% Similarity=0.093 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHH
Q 046312 297 WTWSAMILGLAQHGYAEEALELFSNMKNSS-ISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMAD 375 (514)
Q Consensus 297 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 375 (514)
.+|..+|...-+.+..+.|..+|.+.++.+ ...+.....+++. +...++.+.|..+|+...+.+ ..+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E-~~~~~d~~~A~~Ife~glk~f--~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALME-YYCNKDPKRARKIFERGLKKF--PSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHH-HHTCS-HHHHHHHHHHHHHHH--TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHH
Confidence 467777787778888888888888887543 2222333333333 333467777888888888754 556667778888
Q ss_pred HHHhcCCHHHHHHHHHhCC-CCCCH----HHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCC
Q 046312 376 ILARAGHLKEAYTFIMNMP-FQPNP----IVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRG 435 (514)
Q Consensus 376 ~~~~~g~~~~A~~~~~~~~-~~p~~----~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~ 435 (514)
.+.+.|+.+.|..+|++.. .-|.. ..|...+.--.+.|+ ++...++.+++.+.-|.+
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gd---l~~v~~v~~R~~~~~~~~ 140 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGD---LESVRKVEKRAEELFPED 140 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS----HHHHHHHHHHHHHHTTTS
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHhhhh
Confidence 8888888888888888875 22333 478888888888888 888888888887776663
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0035 Score=57.78 Aligned_cols=161 Identities=11% Similarity=0.008 Sum_probs=112.9
Q ss_pred HHHHHH-HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH--HHhccCcHHHHHHHHHHHHHhhCCCCchHHHH--
Q 046312 297 WTWSAM-ILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLC--ACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYH-- 371 (514)
Q Consensus 297 ~~~~~l-i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~--~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~-- 371 (514)
..|..+ ..++...|++++|..+--..++.. ++ ..+...++ ++.-.++.+.+...|++.. .+.|+...-.
T Consensus 169 ~~a~~lka~cl~~~~~~~~a~~ea~~ilkld--~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal---~ldpdh~~sk~~ 242 (486)
T KOG0550|consen 169 FKAKLLKAECLAFLGDYDEAQSEAIDILKLD--AT-NAEALYVRGLCLYYNDNADKAINHFQQAL---RLDPDHQKSKSA 242 (486)
T ss_pred hHHHHhhhhhhhhcccchhHHHHHHHHHhcc--cc-hhHHHHhcccccccccchHHHHHHHhhhh---ccChhhhhHHhH
Confidence 444443 235667788888888777766532 21 22233332 3445677888888888776 3456543221
Q ss_pred -----------HHHHHHHhcCCHHHHHHHHHhCC------CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCC
Q 046312 372 -----------TMADILARAGHLKEAYTFIMNMP------FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPR 434 (514)
Q Consensus 372 -----------~li~~~~~~g~~~~A~~~~~~~~------~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~ 434 (514)
.=..-..+.|++..|.+.+.+.. .+|+...|.....+..+.|+ ..+|....+.+.++++.
T Consensus 243 ~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgr---l~eaisdc~~Al~iD~s 319 (486)
T KOG0550|consen 243 SMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGR---LREAISDCNEALKIDSS 319 (486)
T ss_pred hhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCC---chhhhhhhhhhhhcCHH
Confidence 11233457899999999998874 45566777777778888999 99999999999999988
Q ss_pred CCchHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 046312 435 GSQNLVIVANKYAEVGMWEKVSNVRRFMKNVG 466 (514)
Q Consensus 435 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 466 (514)
-..+|..-++++...++|++|.+.+++..+..
T Consensus 320 yikall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 320 YIKALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 77788888889999999999999988876443
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.013 Score=53.83 Aligned_cols=89 Identities=16% Similarity=0.134 Sum_probs=38.4
Q ss_pred HHHHHHHhc-CCHHHHHHHHHhcCc-----CC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-----CCHH-H
Q 046312 270 ALIDMYAKC-GAVGCARLLFSRMEE-----IN----VWTWSAMILGLAQHGYAEEALELFSNMKNSSIS-----PNYV-T 333 (514)
Q Consensus 270 ~li~~~~~~-g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-----p~~~-~ 333 (514)
.+...|... |++++|.+.|++..+ .. ..++..+...+.+.|++++|.++|++....... .+.. .
T Consensus 119 ~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~ 198 (282)
T PF14938_consen 119 ELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEY 198 (282)
T ss_dssp HHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHH
Confidence 344444444 555555555555442 11 123344455555666666666666655443211 1111 1
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHH
Q 046312 334 FLGVLCACNHAGMVEDGYRYFHEME 358 (514)
Q Consensus 334 ~~~ll~~~~~~~~~~~a~~~~~~~~ 358 (514)
|...+-++...|+...|...+++..
T Consensus 199 ~l~a~l~~L~~~D~v~A~~~~~~~~ 223 (282)
T PF14938_consen 199 FLKAILCHLAMGDYVAARKALERYC 223 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHG
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2222223444455555655555554
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0035 Score=57.46 Aligned_cols=139 Identities=11% Similarity=0.033 Sum_probs=92.1
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH-HhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 046312 196 VSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSA-CTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDM 274 (514)
Q Consensus 196 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 274 (514)
.+|..+++..-+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|.++|+...+. +..+...+...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 467788888888888888888888887543 2233334333333 23356677788888888876 34567777888888
Q ss_pred HHhcCCHHHHHHHHHhcCc--C----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 046312 275 YAKCGAVGCARLLFSRMEE--I----NVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVL 338 (514)
Q Consensus 275 ~~~~g~~~~A~~~~~~~~~--~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll 338 (514)
+.+.|+.+.|..+|++... + ....|...+.--.+.|+.+.+..+.+++.+. -|+...+..++
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~ 147 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFS 147 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHH
Confidence 8888888888888888765 2 2357888888888888888888888877763 34433343343
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00057 Score=64.93 Aligned_cols=105 Identities=10% Similarity=0.007 Sum_probs=85.9
Q ss_pred HHHHhccCcHHHHHHHHHHHHHhhCCCC-chHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCC
Q 046312 338 LCACNHAGMVEDGYRYFHEMEHVHGIKP-MRIHYHTMADILARAGHLKEAYTFIMNMP-FQP-NPIVLRALLSASSIHDA 414 (514)
Q Consensus 338 l~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~ 414 (514)
...+...|+++.|...|+++.+. .| +...|..+..+|.+.|++++|+..++++. ..| +...|..+..+|...|+
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~---~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDL---DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC
Confidence 45566789999999999999864 44 46678888889999999999999999986 444 57788888899999999
Q ss_pred CCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 046312 415 KYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAE 448 (514)
Q Consensus 415 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 448 (514)
++.|...++.+.+++|+++.+...+..+..+
T Consensus 86 ---~~eA~~~~~~al~l~P~~~~~~~~l~~~~~k 116 (356)
T PLN03088 86 ---YQTAKAALEKGASLAPGDSRFTKLIKECDEK 116 (356)
T ss_pred ---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 9999999999999999988766655544333
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0061 Score=60.70 Aligned_cols=138 Identities=12% Similarity=0.076 Sum_probs=68.7
Q ss_pred CCHHHHHHHHHHHHH--cC---ChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhcc--------CcHHHHHHHHHHHHH
Q 046312 294 INVWTWSAMILGLAQ--HG---YAEEALELFSNMKNSSISPNY-VTFLGVLCACNHA--------GMVEDGYRYFHEMEH 359 (514)
Q Consensus 294 ~~~~~~~~li~~~~~--~~---~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~--------~~~~~a~~~~~~~~~ 359 (514)
.+...|...+.+... .+ +...|..+|++.++. .|+. ..|..+..++... .++..+.+...+...
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 456666666665432 22 255677777777763 4552 3333332222111 112222222222221
Q ss_pred hhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCC
Q 046312 360 VHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP-FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGS 436 (514)
Q Consensus 360 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 436 (514)
......+...|..+.......|++++|...++++. ..|+...|..+...+...|+ .++|.+.++++.+++|..+
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~---~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGD---NRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCCc
Confidence 10112233445555444445566666666666654 45555666666666666666 6666666666666666554
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00048 Score=60.79 Aligned_cols=108 Identities=13% Similarity=0.080 Sum_probs=84.1
Q ss_pred HHhccCcHHHHHHHHHHHHHhhCCCC-chHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCCCC
Q 046312 340 ACNHAGMVEDGYRYFHEMEHVHGIKP-MRIHYHTMADILARAGHLKEAYTFIMNMP-FQPN-PIVLRALLSASSIHDAKY 416 (514)
Q Consensus 340 ~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~~~~ 416 (514)
-..+.+++.+|...|.+.++ +.| |.+.|..-..+|.+.|.++.|.+-.+... +.|. ..+|..|..+|...|+
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~---l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk-- 164 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIE---LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGK-- 164 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHh---cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCc--
Confidence 45678899999999999985 355 46777778889999999999998888775 5554 5889999999999999
Q ss_pred cchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHH
Q 046312 417 QDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWE 453 (514)
Q Consensus 417 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 453 (514)
+++|.++++++++++|++......|-.+--+.+...
T Consensus 165 -~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 165 -YEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred -HHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 999999999999999998754445544444444433
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.17 Score=50.79 Aligned_cols=327 Identities=11% Similarity=0.030 Sum_probs=181.5
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCCc---hHHHHHHHHHHHhCCCCCcchHHHHHHHHH
Q 046312 99 NLIRGYAWSDRPREAVWVFIDMKRRGIKPTEFTYPFVLKACAEISGL---NEGMQVQANVTKSGLDSDVYTNNNLVRFYG 175 (514)
Q Consensus 99 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 175 (514)
.+|+-+...+.+..|+++-..+...-..- ...|.....-+.+..+. +.+..+-+++. ... .....|..+...-.
T Consensus 442 ~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls-~~~-~~~iSy~~iA~~Ay 518 (829)
T KOG2280|consen 442 VVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLS-AKL-TPGISYAAIARRAY 518 (829)
T ss_pred hhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhc-ccC-CCceeHHHHHHHHH
Confidence 46777777888888888877764321111 34555555555555322 22222322222 112 33456777777778
Q ss_pred cCCCHHHHHHHhhccCCC--------ChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChH
Q 046312 176 SCRRKRDACKVFDDMCER--------SVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLS 247 (514)
Q Consensus 176 ~~~~~~~A~~~~~~~~~~--------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~ 247 (514)
.+|+++-|..+++.=+.. +..-+...+.-+.+.|+.+-...++-.+.+. .+...|...+ .+..
T Consensus 519 ~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~s~l~~~l------~~~p 589 (829)
T KOG2280|consen 519 QEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNRSSLFMTL------RNQP 589 (829)
T ss_pred hcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHHHHHHHHH------Hhch
Confidence 889999998887654221 2223444555566667777666666666543 1222222222 2334
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhc------CcCCHHHHHHHHHHHHHcCC----------
Q 046312 248 LGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRM------EEINVWTWSAMILGLAQHGY---------- 311 (514)
Q Consensus 248 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~------~~~~~~~~~~li~~~~~~~~---------- 311 (514)
.|..+|.+..+..-. ..+-+.|-...+...+-.+.-+- .++-..........+.+...
T Consensus 590 ~a~~lY~~~~r~~~~------~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed 663 (829)
T KOG2280|consen 590 LALSLYRQFMRHQDR------ATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALED 663 (829)
T ss_pred hhhHHHHHHHHhhch------hhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHH
Confidence 455555555443211 11222222222222211111111 01111122222333333322
Q ss_pred hHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHH
Q 046312 312 AEEALELFSNMKN-SSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFI 390 (514)
Q Consensus 312 ~~~a~~~~~~m~~-~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 390 (514)
..+-+.+.+.+.. .|......+.+--+.-+...|+-.+|.++-.+.+ -||...|-.-+.+++..++|++.+++-
T Consensus 664 ~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfA 738 (829)
T KOG2280|consen 664 QMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFA 738 (829)
T ss_pred HHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHH
Confidence 1122223333322 2333444455555566677888888887766554 588888988899999999999999888
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHH
Q 046312 391 MNMPFQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFM 462 (514)
Q Consensus 391 ~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 462 (514)
+... .+..|.-++.+|.+.|+ .++|.+.+.+. .+ +.-...+|.+.|++.+|.+.--+-
T Consensus 739 kskk---sPIGy~PFVe~c~~~~n---~~EA~KYiprv---~~-----l~ekv~ay~~~~~~~eAad~A~~~ 796 (829)
T KOG2280|consen 739 KSKK---SPIGYLPFVEACLKQGN---KDEAKKYIPRV---GG-----LQEKVKAYLRVGDVKEAADLAAEH 796 (829)
T ss_pred hccC---CCCCchhHHHHHHhccc---HHHHhhhhhcc---CC-----hHHHHHHHHHhccHHHHHHHHHHh
Confidence 8876 25678889999999999 66666655543 22 226888999999999988775443
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00042 Score=48.18 Aligned_cols=64 Identities=14% Similarity=0.081 Sum_probs=57.7
Q ss_pred CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC-CHHHHHHHHHHHHh
Q 046312 398 NPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVG-MWEKVSNVRRFMKN 464 (514)
Q Consensus 398 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~ 464 (514)
++.+|..+...+...|+ +++|...++++.+++|+++.++..++.+|.+.| ++++|.+.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~---~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGD---YEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTH---HHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 46678888889999999 999999999999999999999999999999999 79999999998765
|
... |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0022 Score=54.07 Aligned_cols=95 Identities=16% Similarity=0.152 Sum_probs=53.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHH
Q 046312 369 HYHTMADILARAGHLKEAYTFIMNMP-FQPN----PIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVA 443 (514)
Q Consensus 369 ~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 443 (514)
.+..+...+...|++++|...|++.. ..|+ ...+..+...+...|+ ++.|...++.+.+..|++...+..++
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~lg 113 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGE---HDKALEYYHQALELNPKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 34444555555566666666655543 1121 2445555556666666 66666666666666666665666666
Q ss_pred HHHHhcCC--------------HHHHHHHHHHHHhCC
Q 046312 444 NKYAEVGM--------------WEKVSNVRRFMKNVG 466 (514)
Q Consensus 444 ~~~~~~g~--------------~~~A~~~~~~m~~~~ 466 (514)
.+|...|+ +++|.+++++....+
T Consensus 114 ~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~ 150 (172)
T PRK02603 114 VIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLA 150 (172)
T ss_pred HHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhC
Confidence 66666555 455666666655433
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0023 Score=47.24 Aligned_cols=92 Identities=14% Similarity=0.102 Sum_probs=61.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHH
Q 046312 299 WSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILA 378 (514)
Q Consensus 299 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 378 (514)
+..+...+...|++++|..++++..+.. +.+...+..+..++...|+++.|...++..... .+.+...+..+...+.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~ 79 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALEL--DPDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCcchhHHHHHHHHHH
Confidence 4556666777788888888887777642 223355666666777777777777777777653 2233346666677777
Q ss_pred hcCCHHHHHHHHHhC
Q 046312 379 RAGHLKEAYTFIMNM 393 (514)
Q Consensus 379 ~~g~~~~A~~~~~~~ 393 (514)
..|++++|...+...
T Consensus 80 ~~~~~~~a~~~~~~~ 94 (100)
T cd00189 80 KLGKYEEALEAYEKA 94 (100)
T ss_pred HHHhHHHHHHHHHHH
Confidence 777777777777654
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.002 Score=54.43 Aligned_cols=90 Identities=10% Similarity=0.110 Sum_probs=65.9
Q ss_pred CCCChhhHHHHHHHHHh-----CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC----------------ChHHH
Q 046312 191 CERSVVSWNVIITVCVE-----NLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELG----------------NLSLG 249 (514)
Q Consensus 191 ~~~~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g----------------~~~~a 249 (514)
..++-.+|..+++.|.+ .|..+=....++.|.+-|+.-|..+|+.|++.+=+.. +-+-|
T Consensus 43 ~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~ 122 (228)
T PF06239_consen 43 QAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECA 122 (228)
T ss_pred ccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHH
Confidence 34556666666666654 3566666777788888888888888888888765422 34567
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 046312 250 KWVHLQLIERGTVLNCQLGTALIDMYAKCGA 280 (514)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 280 (514)
.+++++|...|+-||..++..+++.+++.+.
T Consensus 123 i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 123 IDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 8888888888888888888888888876654
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0005 Score=47.12 Aligned_cols=59 Identities=8% Similarity=0.065 Sum_probs=49.4
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 046312 405 LLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNVG 466 (514)
Q Consensus 405 l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 466 (514)
+...+...|+ ++.|.+.++.+.+..|+++.++..++.++...|++++|..+++++.+..
T Consensus 3 ~a~~~~~~g~---~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 3 LARALYQQGD---YDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHCTH---HHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCC---HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 4456778888 9999999999999999988889999999999999999999999887543
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0038 Score=59.35 Aligned_cols=103 Identities=10% Similarity=0.055 Sum_probs=83.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCC-chHHHHHHHHHHHhc
Q 046312 302 MILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKP-MRIHYHTMADILARA 380 (514)
Q Consensus 302 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~ 380 (514)
-...+...|++++|+..|+++++.. +-+...|..+..+|...|++++|...++++... .| +...|..+..+|...
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l---~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIEL---DPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHh
Confidence 3456778999999999999999853 334667888888999999999999999999864 45 467788889999999
Q ss_pred CCHHHHHHHHHhCC-CCCCHHHHHHHHHH
Q 046312 381 GHLKEAYTFIMNMP-FQPNPIVLRALLSA 408 (514)
Q Consensus 381 g~~~~A~~~~~~~~-~~p~~~~~~~l~~~ 408 (514)
|++++|...|++.. ..|+......++..
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~~~~l~~ 112 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRFTKLIKE 112 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 99999999999986 66765555444433
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0066 Score=55.87 Aligned_cols=21 Identities=5% Similarity=-0.018 Sum_probs=11.6
Q ss_pred HHHHHHhCCCchHHHHHHHHH
Q 046312 100 LIRGYAWSDRPREAVWVFIDM 120 (514)
Q Consensus 100 li~~~~~~g~~~~a~~~~~~m 120 (514)
....|-..|++++|.+.|.+.
T Consensus 41 Aa~~fk~~~~~~~A~~ay~kA 61 (282)
T PF14938_consen 41 AANCFKLAKDWEKAAEAYEKA 61 (282)
T ss_dssp HHHHHHHTT-CHHHHHHHHHH
T ss_pred HHHHHHHHhccchhHHHHHHH
Confidence 334555566666666666654
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0025 Score=53.55 Aligned_cols=94 Identities=16% Similarity=-0.000 Sum_probs=69.5
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHH
Q 046312 366 MRIHYHTMADILARAGHLKEAYTFIMNMP-FQPN----PIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLV 440 (514)
Q Consensus 366 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 440 (514)
....|..+...+...|++++|...|++.. ..|+ ..++..+...+...|+ .++|...++.+.++.|.....+.
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~---~~eA~~~~~~Al~~~~~~~~~~~ 110 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGE---HTKALEYYFQALERNPFLPQALN 110 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCcCcHHHHH
Confidence 35556667777777888888888887774 2222 3467777788888888 88888888888888888777777
Q ss_pred HHHHHHH-------hcCCHHHHHHHHHHH
Q 046312 441 IVANKYA-------EVGMWEKVSNVRRFM 462 (514)
Q Consensus 441 ~l~~~~~-------~~g~~~~A~~~~~~m 462 (514)
.++.+|. +.|++++|...+++.
T Consensus 111 ~la~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 111 NMAVICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 7777777 778887666665544
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0081 Score=50.67 Aligned_cols=87 Identities=11% Similarity=-0.019 Sum_probs=46.9
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 046312 196 VSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPD--ETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALID 273 (514)
Q Consensus 196 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 273 (514)
..+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+++..+.... +...+..+..
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 114 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHH
Confidence 3455555556666666666666666654322221 234555556666666666666666666654322 3444445555
Q ss_pred HHHhcCCHHH
Q 046312 274 MYAKCGAVGC 283 (514)
Q Consensus 274 ~~~~~g~~~~ 283 (514)
+|...|+...
T Consensus 115 ~~~~~g~~~~ 124 (172)
T PRK02603 115 IYHKRGEKAE 124 (172)
T ss_pred HHHHcCChHh
Confidence 5555555433
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.034 Score=54.49 Aligned_cols=203 Identities=13% Similarity=0.142 Sum_probs=110.1
Q ss_pred HHHHHHHHhccCCchHHH--HHHHHHHHhCCCCCcchHHHHHHHHHcCCCHHHHHHHhhccCCCChhhHHHHHHHHHhCC
Q 046312 132 YPFVLKACAEISGLNEGM--QVQANVTKSGLDSDVYTNNNLVRFYGSCRRKRDACKVFDDMCERSVVSWNVIITVCVENL 209 (514)
Q Consensus 132 ~~~ll~~~~~~g~~~~a~--~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~ 209 (514)
++..=++|.+.++..--. .-++++.+.|-.|+... +...++-.|.+.+|-++|.+ .|
T Consensus 601 f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~------------------~G 659 (1081)
T KOG1538|consen 601 FETARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR------------------SG 659 (1081)
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH------------------cC
Confidence 444445555555544322 33456667776676543 44567778888888887754 45
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHH
Q 046312 210 WLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFS 289 (514)
Q Consensus 210 ~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 289 (514)
.-..|+++|..|+-- -...-+...|..++-..+.+.-.+.. -+..--.+..+.+...|+.++|..+
T Consensus 660 ~enRAlEmyTDlRMF----------D~aQE~~~~g~~~eKKmL~RKRA~WA--r~~kePkaAAEmLiSaGe~~KAi~i-- 725 (1081)
T KOG1538|consen 660 HENRALEMYTDLRMF----------DYAQEFLGSGDPKEKKMLIRKRADWA--RNIKEPKAAAEMLISAGEHVKAIEI-- 725 (1081)
T ss_pred chhhHHHHHHHHHHH----------HHHHHHhhcCChHHHHHHHHHHHHHh--hhcCCcHHHHHHhhcccchhhhhhh--
Confidence 556666666655421 01122223333333333222211111 0111112334555566776666654
Q ss_pred hcCcCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHH
Q 046312 290 RMEEINVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIH 369 (514)
Q Consensus 290 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~ 369 (514)
+..+|-.+-+.++-+++-. .+..+...+...+.+...+..|-++|.+|-+.
T Consensus 726 ----------------~~d~gW~d~lidI~rkld~----~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~--------- 776 (1081)
T KOG1538|consen 726 ----------------CGDHGWVDMLIDIARKLDK----AEREPLLLCATYLKKLDSPGLAAEIFLKMGDL--------- 776 (1081)
T ss_pred ----------------hhcccHHHHHHHHHhhcch----hhhhHHHHHHHHHhhccccchHHHHHHHhccH---------
Confidence 3344444555555444432 23445555555566667777788888877642
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCC-CCCCH
Q 046312 370 YHTMADILARAGHLKEAYTFIMNMP-FQPNP 399 (514)
Q Consensus 370 ~~~li~~~~~~g~~~~A~~~~~~~~-~~p~~ 399 (514)
.++++.....++|++|..+-++.+ ..||+
T Consensus 777 -ksiVqlHve~~~W~eAFalAe~hPe~~~dV 806 (1081)
T KOG1538|consen 777 -KSLVQLHVETQRWDEAFALAEKHPEFKDDV 806 (1081)
T ss_pred -HHHhhheeecccchHhHhhhhhCccccccc
Confidence 346677778888888888888887 44554
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.045 Score=45.06 Aligned_cols=98 Identities=14% Similarity=0.014 Sum_probs=51.9
Q ss_pred CCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCc-----CCHHHHHH
Q 046312 227 EPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEE-----INVWTWSA 301 (514)
Q Consensus 227 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~ 301 (514)
.|+...-..|..++.+.|+..+|...|++....-+.-|..+...+.++....+++..|..+++++.+ ..+...-.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 4555555555556666666666666666555544444555555555555555555555555555443 11223333
Q ss_pred HHHHHHHcCChHHHHHHHHHHHH
Q 046312 302 MILGLAQHGYAEEALELFSNMKN 324 (514)
Q Consensus 302 li~~~~~~~~~~~a~~~~~~m~~ 324 (514)
+...+...|++.+|..-|+....
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~ 188 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAIS 188 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHH
Confidence 44455555555555555555554
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0091 Score=59.46 Aligned_cols=135 Identities=12% Similarity=0.040 Sum_probs=99.4
Q ss_pred CCCCCHHHHHHHHHHHhcc-----CcHHHHHHHHHHHHHhhCCCCc-hHHHHHHHHHHHhc--------CCHHHHHHHHH
Q 046312 326 SISPNYVTFLGVLCACNHA-----GMVEDGYRYFHEMEHVHGIKPM-RIHYHTMADILARA--------GHLKEAYTFIM 391 (514)
Q Consensus 326 g~~p~~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~--------g~~~~A~~~~~ 391 (514)
+.+.+...|...+++.... ++...|..+|++..+. .|+ ...|..+..++... +++..+.+...
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l---dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS---EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 4567778888888775432 3477899999999865 787 44455444433321 22345555555
Q ss_pred hCC----CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 046312 392 NMP----FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNVGL 467 (514)
Q Consensus 392 ~~~----~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 467 (514)
+.. ...+...|.++.-.....|+ +++|...++++.+++|+ ...|..++.+|...|+.++|.+.+++....+.
T Consensus 409 ~a~al~~~~~~~~~~~ala~~~~~~g~---~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P 484 (517)
T PRK10153 409 NIVALPELNVLPRIYEILAVQALVKGK---TDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLRP 484 (517)
T ss_pred HhhhcccCcCChHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 532 33455778777777777899 99999999999999995 77899999999999999999999999987654
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.097 Score=45.64 Aligned_cols=130 Identities=11% Similarity=0.019 Sum_probs=88.4
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHH----
Q 046312 196 VSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTAL---- 271 (514)
Q Consensus 196 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l---- 271 (514)
...+.+++.+.-.|.+.-.+..+++.++...+.+......+.+...+.||.+.|...++...+..-..+..+.+.+
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 3455666777777888888888888888765667777777888888888888888888877765433343333333
Q ss_pred -HHHHHhcCCHHHHHHHHHhcCc---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 046312 272 -IDMYAKCGAVGCARLLFSRMEE---INVWTWSAMILGLAQHGYAEEALELFSNMKNS 325 (514)
Q Consensus 272 -i~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 325 (514)
...|.-.+++..|...|.++.. .++..-|.-.-+..-.|+..+|++.++.|+..
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3445566677777777777664 34444454444455567778888888887764
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.18 Score=50.14 Aligned_cols=338 Identities=18% Similarity=0.125 Sum_probs=169.6
Q ss_pred CCChHHHHHHHHhcccCCCCChHHHHHHHcccCCCCCcccHH------------HHHHHHHhCCCchHHHHHHHHHHHcC
Q 046312 57 QNDAQILKELVRFCTLSSSKNLTYARSILCNYVNDSVPIPWN------------NLIRGYAWSDRPREAVWVFIDMKRRG 124 (514)
Q Consensus 57 ~~~~~~~~~ll~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------------~li~~~~~~g~~~~a~~~~~~m~~~~ 124 (514)
.|.+..|..|...-. ..-.++.|...|-+...-+.+..-. +=|.+| -|++++|.++|-+|-+++
T Consensus 689 nPHprLWrllAe~Al--~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drrD 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYAL--FKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRRD 764 (1189)
T ss_pred CCchHHHHHHHHHHH--HHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchhh
Confidence 478888888877666 6777888888877765333331111 112222 477888888877765543
Q ss_pred CCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCC----cchHHHHHHHHHcCCCHHHHHHHhhccCCCChhhHHH
Q 046312 125 IKPTEFTYPFVLKACAEISGLNEGMQVQANVTKSGLDSD----VYTNNNLVRFYGSCRRKRDACKVFDDMCERSVVSWNV 200 (514)
Q Consensus 125 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 200 (514)
+ .+....+.|++-.+.++++.- |-..| ...++.+...++....+++|.+.+..-.. -..
T Consensus 765 L---------Aielr~klgDwfrV~qL~r~g---~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~-----~e~ 827 (1189)
T KOG2041|consen 765 L---------AIELRKKLGDWFRVYQLIRNG---GSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD-----TEN 827 (1189)
T ss_pred h---------hHHHHHhhhhHHHHHHHHHcc---CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----hHh
Confidence 2 344555666666665555321 11111 24566666666666667777666654311 112
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 046312 201 IITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGA 280 (514)
Q Consensus 201 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 280 (514)
.+.++.+..++++-..+-.. ++.+....-.+...+...|.-++|.+.+-. .+.+ .+.+..+...++
T Consensus 828 ~~ecly~le~f~~LE~la~~-----Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr---~s~p------kaAv~tCv~LnQ 893 (1189)
T KOG2041|consen 828 QIECLYRLELFGELEVLART-----LPEDSELLPVMADMFTSVGMCDQAVEAYLR---RSLP------KAAVHTCVELNQ 893 (1189)
T ss_pred HHHHHHHHHhhhhHHHHHHh-----cCcccchHHHHHHHHHhhchHHHHHHHHHh---ccCc------HHHHHHHHHHHH
Confidence 34444444444443333222 233444555566666666666666554422 2211 234555666667
Q ss_pred HHHHHHHHHhcCcCCHHHHH--------------HHHHHHHHcCChHHHHHHHHHHHH----CCCCCCHHHHHHHHHHH-
Q 046312 281 VGCARLLFSRMEEINVWTWS--------------AMILGLAQHGYAEEALELFSNMKN----SSISPNYVTFLGVLCAC- 341 (514)
Q Consensus 281 ~~~A~~~~~~~~~~~~~~~~--------------~li~~~~~~~~~~~a~~~~~~m~~----~g~~p~~~~~~~ll~~~- 341 (514)
|.+|.++-+...-|.+.+.- --|..+.+.|+.-.|-+++.+|.+ ++.++-..--..++.++
T Consensus 894 W~~avelaq~~~l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~KklYVL~AlL 973 (1189)
T KOG2041|consen 894 WGEAVELAQRFQLPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLGALL 973 (1189)
T ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHHHHH
Confidence 77777666655444333221 123445556666666666666644 23333321111111111
Q ss_pred --------------hccCcHHHHHHHHHHHHHhh------CCCCchHHHH--HHHHHHHhcCCHHHHHHHHHhCC----C
Q 046312 342 --------------NHAGMVEDGYRYFHEMEHVH------GIKPMRIHYH--TMADILARAGHLKEAYTFIMNMP----F 395 (514)
Q Consensus 342 --------------~~~~~~~~a~~~~~~~~~~~------~~~p~~~~~~--~li~~~~~~g~~~~A~~~~~~~~----~ 395 (514)
...|..++|..+++...-.. +.-.....|. .|.+--...|..+.|+..--.+. +
T Consensus 974 vE~h~~~ik~~~~~~~~g~~~dat~lles~~l~~~~ri~~n~WrgAEAyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~ 1053 (1189)
T KOG2041|consen 974 VENHRQTIKELRKIDKHGFLEDATDLLESGLLAEQSRILENTWRGAEAYHFMILAQRQLFEGRVKDALQTALILSDYEDF 1053 (1189)
T ss_pred HHHHHHHHHHhhhhhhcCcchhhhhhhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHhchHHHHHHHHhhhccHhhc
Confidence 11244444444333322110 0111222333 33344455677777766543332 4
Q ss_pred CCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcC
Q 046312 396 QPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELE 432 (514)
Q Consensus 396 ~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~ 432 (514)
-|...+|..|.-+.+.... +..-.+++-++....
T Consensus 1054 lpP~eiySllALaaca~ra---FGtCSKAfmkLe~~e 1087 (1189)
T KOG2041|consen 1054 LPPAEIYSLLALAACAVRA---FGTCSKAFMKLEAFE 1087 (1189)
T ss_pred CCHHHHHHHHHHHHhhhhh---hhhhHHHHHHHHhhh
Confidence 4566667666655555555 555555555554433
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.13 Score=46.04 Aligned_cols=61 Identities=10% Similarity=-0.030 Sum_probs=36.9
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHH---HHHHHHHHhccCChHHHHHHHHHHHHhCC
Q 046312 200 VIITVCVENLWLGEAVGYFVKMKDLGFEPDETT---MLVVLSACTELGNLSLGKWVHLQLIERGT 261 (514)
Q Consensus 200 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t---~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 261 (514)
.....+.+.|++++|.+.|+++...-..+ ... ...+..++.+.++++.|...+++.++..+
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P 100 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNP 100 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc
Confidence 33444556777777777777777652221 111 13345566677777777777777776643
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0044 Score=52.46 Aligned_cols=96 Identities=17% Similarity=0.217 Sum_probs=71.4
Q ss_pred HHHHHhc--CcCCHHHHHHHHHHHHH-----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc-------------
Q 046312 285 RLLFSRM--EEINVWTWSAMILGLAQ-----HGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHA------------- 344 (514)
Q Consensus 285 ~~~~~~~--~~~~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~------------- 344 (514)
...|+.. ...+-.+|..++..|.+ .|..+=....++.|.+-|+.-|..+|+.|+..+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 3445554 34667777777777764 467777888889999999999999999999987653
Q ss_pred ---CcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcC
Q 046312 345 ---GMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAG 381 (514)
Q Consensus 345 ---~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 381 (514)
.+.+-|.+++++|... |+-||.+++..+++.+++.+
T Consensus 114 hyp~Qq~c~i~lL~qME~~-gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMENN-GVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred cCcHHHHHHHHHHHHHHHc-CCCCcHHHHHHHHHHhcccc
Confidence 2346677888888774 88888888888888776554
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.058 Score=41.64 Aligned_cols=141 Identities=17% Similarity=0.182 Sum_probs=90.0
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHH
Q 046312 306 LAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKE 385 (514)
Q Consensus 306 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 385 (514)
+.-.|.+++..++..+...+ .+..-++.+|.-....-+=+...++++.+-+.|.+.+ +|+...
T Consensus 12 ~ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~--------------C~NlKr 74 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISK--------------CGNLKR 74 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG---------------S-THH
T ss_pred HHHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCchh--------------hcchHH
Confidence 45678889999999888763 4667788888777776666777777777765433332 344444
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 046312 386 AYTFIMNMPFQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNV 465 (514)
Q Consensus 386 A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 465 (514)
...-+-.+. .+.......+......|. -+...++...+.+-+..++.....++.+|.+.|+..++.+++++..++
T Consensus 75 Vi~C~~~~n--~~se~vD~ALd~lv~~~k---kDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 75 VIECYAKRN--KLSEYVDLALDILVKQGK---KDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHHHHTT-----HHHHHHHHHHHHTT----HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhcc---HHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 444443333 244455566777888888 777777777776544455778889999999999999999999999999
Q ss_pred CCC
Q 046312 466 GLK 468 (514)
Q Consensus 466 ~~~ 468 (514)
|++
T Consensus 150 G~k 152 (161)
T PF09205_consen 150 GLK 152 (161)
T ss_dssp T-H
T ss_pred chH
Confidence 974
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0065 Score=49.24 Aligned_cols=89 Identities=13% Similarity=0.029 Sum_probs=76.9
Q ss_pred HHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC
Q 046312 373 MADILARAGHLKEAYTFIMNMP--FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVG 450 (514)
Q Consensus 373 li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 450 (514)
..--+-..|++++|..+|.-+- ..-+..-+..|..++...++ ++.|...+..+.-++++++.++...+.+|...|
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~---y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~ 119 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQ---FQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMR 119 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHcccCCCCccchHHHHHHHhC
Confidence 3444567899999999998875 33456667788888888999 999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHh
Q 046312 451 MWEKVSNVRRFMKN 464 (514)
Q Consensus 451 ~~~~A~~~~~~m~~ 464 (514)
+.+.|+..|+...+
T Consensus 120 ~~~~A~~~f~~a~~ 133 (165)
T PRK15331 120 KAAKARQCFELVNE 133 (165)
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999998876
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.3 Score=49.11 Aligned_cols=337 Identities=13% Similarity=0.032 Sum_probs=184.2
Q ss_pred HcCCCCCcchHHH-----HHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCC---CHHHHHHHhhccCC-
Q 046312 122 RRGIKPTEFTYPF-----VLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCR---RKRDACKVFDDMCE- 192 (514)
Q Consensus 122 ~~~~~p~~~~~~~-----ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~A~~~~~~~~~- 192 (514)
.-|++.+..-|.. +++-+...+.+..|.++-..+...-.. ...+|......+.+.. +-+.+..+-+++..
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~ 503 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK 503 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhccc
Confidence 3466666555543 456667778888888887766422111 1456666666666653 22334444444433
Q ss_pred -CChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCC----CCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhH
Q 046312 193 -RSVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFE----PDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQL 267 (514)
Q Consensus 193 -~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~----p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 267 (514)
-...+|..+.+-....|+.+-|..+++.=...+.+ .+..-+...+.-+.+.|+.+....++-.+...- +...
T Consensus 504 ~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~---~~s~ 580 (829)
T KOG2280|consen 504 LTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL---NRSS 580 (829)
T ss_pred CCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH---HHHH
Confidence 35567777777777888888887776542111100 011122333444555555555555554443321 0000
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCc-CCHHHHHHHHHHHHHcCChHHHHHHH--HHHH----HCCCCCCHHHHHHHHHH
Q 046312 268 GTALIDMYAKCGAVGCARLLFSRMEE-INVWTWSAMILGLAQHGYAEEALELF--SNMK----NSSISPNYVTFLGVLCA 340 (514)
Q Consensus 268 ~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~--~~m~----~~g~~p~~~~~~~ll~~ 340 (514)
.+....+...|..+|....+ .|..+ +-..| +.++-.++..-| +... ..|..|+..+ ...+
T Consensus 581 ------l~~~l~~~p~a~~lY~~~~r~~~~~~---l~d~y-~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~---~a~~ 647 (829)
T KOG2280|consen 581 ------LFMTLRNQPLALSLYRQFMRHQDRAT---LYDFY-NQDDNHQALASFHLQASYAAETIEGRIPALKT---AANA 647 (829)
T ss_pred ------HHHHHHhchhhhHHHHHHHHhhchhh---hhhhh-hcccchhhhhhhhhhhhhhhhhhcccchhHHH---HHHH
Confidence 11111122233333333222 11111 01111 222222222211 1100 1233344332 3333
Q ss_pred HhccCc----------HHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 046312 341 CNHAGM----------VEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMPFQPNPIVLRALLSASS 410 (514)
Q Consensus 341 ~~~~~~----------~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~ 410 (514)
|.+... ..+-+.+.+.+..++|..-...+.+--+..+...|+..+|.++-.+.+ -||-..|..=+.++.
T Consensus 648 ~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-ipdKr~~wLk~~aLa 726 (829)
T KOG2280|consen 648 FAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-IPDKRLWWLKLTALA 726 (829)
T ss_pred HhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence 433322 223344555555555654444556666777888999999999999998 578888888888999
Q ss_pred hcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCceeEEEECCeEEEEEeccc
Q 046312 411 IHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNVGLKKMKGMSWVELGGSIHRFYSGYD 490 (514)
Q Consensus 411 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (514)
..++ .+++.+.+....+ |-.|.....+|.+.|+.++|.+++-+....- ..+.+|.
T Consensus 727 ~~~k------weeLekfAkskks--PIGy~PFVe~c~~~~n~~EA~KYiprv~~l~-----------------ekv~ay~ 781 (829)
T KOG2280|consen 727 DIKK------WEELEKFAKSKKS--PIGYLPFVEACLKQGNKDEAKKYIPRVGGLQ-----------------EKVKAYL 781 (829)
T ss_pred hhhh------HHHHHHHHhccCC--CCCchhHHHHHHhcccHHHHhhhhhccCChH-----------------HHHHHHH
Confidence 8888 6666666666664 4568999999999999999999988764321 2345567
Q ss_pred CCcChHHHHHH
Q 046312 491 SQVELAGIYQI 501 (514)
Q Consensus 491 ~~~~~~~a~~~ 501 (514)
+.|.+.+|.++
T Consensus 782 ~~~~~~eAad~ 792 (829)
T KOG2280|consen 782 RVGDVKEAADL 792 (829)
T ss_pred HhccHHHHHHH
Confidence 77777777654
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.019 Score=44.55 Aligned_cols=106 Identities=12% Similarity=-0.033 Sum_probs=60.3
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCC--chhHHHHHHHHHH
Q 046312 201 IITVCVENLWLGEAVGYFVKMKDLGFEPD--ETTMLVVLSACTELGNLSLGKWVHLQLIERGTVL--NCQLGTALIDMYA 276 (514)
Q Consensus 201 li~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~ 276 (514)
+..++-..|+.++|+.+|++....|...+ ...+..+...+...|++++|..+++......... +......+.-++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 34456667788888888888777765544 2345556666777777777777777776653220 1122222233455
Q ss_pred hcCCHHHHHHHHHhcCcCCHHHHHHHHHHH
Q 046312 277 KCGAVGCARLLFSRMEEINVWTWSAMILGL 306 (514)
Q Consensus 277 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 306 (514)
..|+.++|.+.+-....++...|..-|..|
T Consensus 87 ~~gr~~eAl~~~l~~la~~~~~y~ra~~~y 116 (120)
T PF12688_consen 87 NLGRPKEALEWLLEALAETLPRYRRAIRFY 116 (120)
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666665544444433444444433
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.04 Score=45.32 Aligned_cols=130 Identities=11% Similarity=0.056 Sum_probs=95.7
Q ss_pred CCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCC-CCchHHHHHHHHHHHhcCCHHHHHHHHHhCC------CCCCH
Q 046312 327 ISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGI-KPMRIHYHTMADILARAGHLKEAYTFIMNMP------FQPNP 399 (514)
Q Consensus 327 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~------~~p~~ 399 (514)
..|+...-..|..+..+.|+..+|...|++... |+ .-|......+.++....+++.+|...++++. ..||.
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qals--G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~ 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALS--GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc--cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc
Confidence 456666666777888888888888888888876 44 4556677778888888888888888888763 23333
Q ss_pred HHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 046312 400 IVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKN 464 (514)
Q Consensus 400 ~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 464 (514)
.-.+...+...|. ...|+..++.+..--|. +.........+.+.|+.++|..-+..+.+
T Consensus 163 --~Ll~aR~laa~g~---~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 163 --HLLFARTLAAQGK---YADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred --hHHHHHHHHhcCC---chhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 3346677788888 88888888888888776 55666777788888888777766555543
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.023 Score=45.85 Aligned_cols=98 Identities=8% Similarity=-0.082 Sum_probs=69.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCc---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 046312 267 LGTALIDMYAKCGAVGCARLLFSRMEE---INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNH 343 (514)
Q Consensus 267 ~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 343 (514)
....+...+...|++++|..+|+.+.. .+..-|..|..++-..|++++|+..|....... +-|+..+-.+..++..
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHH
Confidence 334455566677888888888877664 345667777777888888888888888887754 2445667777778888
Q ss_pred cCcHHHHHHHHHHHHHhhCCCC
Q 046312 344 AGMVEDGYRYFHEMEHVHGIKP 365 (514)
Q Consensus 344 ~~~~~~a~~~~~~~~~~~~~~p 365 (514)
.|+.+.|.+-|+......+-.|
T Consensus 116 lG~~~~A~~aF~~Ai~~~~~~~ 137 (157)
T PRK15363 116 CDNVCYAIKALKAVVRICGEVS 137 (157)
T ss_pred cCCHHHHHHHHHHHHHHhccCh
Confidence 8888888888888776544333
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.048 Score=50.65 Aligned_cols=152 Identities=11% Similarity=-0.054 Sum_probs=85.6
Q ss_pred HHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCcCCHH---------------HHHHHH
Q 046312 239 ACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEEINVW---------------TWSAMI 303 (514)
Q Consensus 239 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---------------~~~~li 303 (514)
++...|+.++|.++-..+++.... +......-..++.-.++.+.|...|++....++. .|..=.
T Consensus 178 cl~~~~~~~~a~~ea~~ilkld~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~g 256 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILKLDAT-NAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERG 256 (486)
T ss_pred hhhhcccchhHHHHHHHHHhcccc-hhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhh
Confidence 344566666666665555554311 2222111222334456677777777776652221 122223
Q ss_pred HHHHHcCChHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCc-hHHHHHHHHHHHh
Q 046312 304 LGLAQHGYAEEALELFSNMKNS---SISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPM-RIHYHTMADILAR 379 (514)
Q Consensus 304 ~~~~~~~~~~~a~~~~~~m~~~---g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~ 379 (514)
.-..+.|++..|.+.|.+.+.. .+.|+...|.....+..+.|+.++|+.--+... .+.+. ...|..-..++.-
T Consensus 257 N~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al---~iD~syikall~ra~c~l~ 333 (486)
T KOG0550|consen 257 NDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEAL---KIDSSYIKALLRRANCHLA 333 (486)
T ss_pred hhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhh---hcCHHHHHHHHHHHHHHHH
Confidence 3456778888888888887763 244555566666667777788888877666655 23333 2233333445556
Q ss_pred cCCHHHHHHHHHhCC
Q 046312 380 AGHLKEAYTFIMNMP 394 (514)
Q Consensus 380 ~g~~~~A~~~~~~~~ 394 (514)
.++|++|.+-+++..
T Consensus 334 le~~e~AV~d~~~a~ 348 (486)
T KOG0550|consen 334 LEKWEEAVEDYEKAM 348 (486)
T ss_pred HHHHHHHHHHHHHHH
Confidence 677777777776653
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.079 Score=47.34 Aligned_cols=54 Identities=13% Similarity=-0.096 Sum_probs=33.7
Q ss_pred HHHHHcCCCHHHHHHHhhccCC--CCh-hh---HHHHHHHHHhCCChhHHHHHHHHHHHC
Q 046312 171 VRFYGSCRRKRDACKVFDDMCE--RSV-VS---WNVIITVCVENLWLGEAVGYFVKMKDL 224 (514)
Q Consensus 171 i~~~~~~~~~~~A~~~~~~~~~--~~~-~~---~~~li~~~~~~~~~~~a~~~~~~m~~~ 224 (514)
...+...|++++|.+.|+++.. |+. .. .-.++.++.+.+++++|...+++..+.
T Consensus 39 A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 39 AQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 3344556777777777777622 221 11 223456677788888888888888775
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0052 Score=54.44 Aligned_cols=100 Identities=18% Similarity=0.203 Sum_probs=83.3
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCc-hHHHHHHHHHHHhcC
Q 046312 304 LGLAQHGYAEEALELFSNMKNSSISP-NYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPM-RIHYHTMADILARAG 381 (514)
Q Consensus 304 ~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g 381 (514)
.-+.+.+++.+|+..|.+.++. .| |.+.|..-..+|++.|.++.|++-.+... .+.|. ...|..|..+|...|
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l--~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al---~iDp~yskay~RLG~A~~~~g 163 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIEL--DPTNAVYYCNRAAAYSKLGEYEDAVKDCESAL---SIDPHYSKAYGRLGLAYLALG 163 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhc--CCCcchHHHHHHHHHHHhcchHHHHHHHHHHH---hcChHHHHHHHHHHHHHHccC
Confidence 3467889999999999999984 44 56667788899999999999998887777 44676 678999999999999
Q ss_pred CHHHHHHHHHhCC-CCCCHHHHHHHHHH
Q 046312 382 HLKEAYTFIMNMP-FQPNPIVLRALLSA 408 (514)
Q Consensus 382 ~~~~A~~~~~~~~-~~p~~~~~~~l~~~ 408 (514)
++++|.+.|++.. +.|+-.+|..=+..
T Consensus 164 k~~~A~~aykKaLeldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 164 KYEEAIEAYKKALELDPDNESYKSNLKI 191 (304)
T ss_pred cHHHHHHHHHhhhccCCCcHHHHHHHHH
Confidence 9999999999987 88887777655444
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0023 Score=45.02 Aligned_cols=58 Identities=17% Similarity=0.115 Sum_probs=49.7
Q ss_pred HHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 046312 407 SASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNVGL 467 (514)
Q Consensus 407 ~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 467 (514)
..+...++ ++.|.++++.+.+++|+++..+...+.+|.+.|++++|.+.+++..+.+.
T Consensus 3 ~~~~~~~~---~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 3 QIYLQQED---YEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHhCCC---HHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 45677788 89999999999999999888888999999999999999999998876554
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.028 Score=43.60 Aligned_cols=105 Identities=15% Similarity=0.158 Sum_probs=71.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCc----hHHHHHHHH
Q 046312 302 MILGLAQHGYAEEALELFSNMKNSSISPN--YVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPM----RIHYHTMAD 375 (514)
Q Consensus 302 li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~ 375 (514)
+..++-..|+.++|+.+|++....|.... ...+-.+...+-..|++++|..++++....+ |+ ......+..
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~---p~~~~~~~l~~f~Al 83 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF---PDDELNAALRVFLAL 83 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---CCccccHHHHHHHHH
Confidence 44566778899999999999988876655 3345666778888899999999998888752 33 222223344
Q ss_pred HHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 046312 376 ILARAGHLKEAYTFIMNMPFQPNPIVLRALLSASS 410 (514)
Q Consensus 376 ~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~ 410 (514)
++...|+.++|++.+-... .++...|.--|..|.
T Consensus 84 ~L~~~gr~~eAl~~~l~~l-a~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 84 ALYNLGRPKEALEWLLEAL-AETLPRYRRAIRFYA 117 (120)
T ss_pred HHHHCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 6778899999988876543 233335555554443
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0031 Score=43.57 Aligned_cols=60 Identities=13% Similarity=0.191 Sum_probs=37.1
Q ss_pred ccCcHHHHHHHHHHHHHhhCCCC-chHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCHHHHHHH
Q 046312 343 HAGMVEDGYRYFHEMEHVHGIKP-MRIHYHTMADILARAGHLKEAYTFIMNMP-FQPNPIVLRAL 405 (514)
Q Consensus 343 ~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l 405 (514)
..|++++|..+|+++... .| +...+..+..+|.+.|++++|.++++++. ..|+...|..+
T Consensus 3 ~~~~~~~A~~~~~~~l~~---~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l 64 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR---NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQL 64 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH---TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 456777777777777654 33 45555566777777777777777777775 55554444433
|
... |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0088 Score=50.22 Aligned_cols=63 Identities=8% Similarity=-0.023 Sum_probs=34.2
Q ss_pred cHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCC--cchHHHHHHHHhccCCchHHHHHHHHHHHh
Q 046312 96 PWNNLIRGYAWSDRPREAVWVFIDMKRRGIKPT--EFTYPFVLKACAEISGLNEGMQVQANVTKS 158 (514)
Q Consensus 96 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 158 (514)
.|..+...+...|++++|+..|++.......+. ..++..+...+...|+.++|...+++....
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~ 101 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER 101 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345555555556666666666666554321111 124555555666666666666666665544
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0009 Score=46.34 Aligned_cols=53 Identities=11% Similarity=0.213 Sum_probs=42.6
Q ss_pred hcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 046312 411 IHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNVG 466 (514)
Q Consensus 411 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 466 (514)
..|+ ++.|.+.++.+.+..|++..++..++.+|.+.|++++|.++++++....
T Consensus 3 ~~~~---~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 3 KQGD---YDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HTTH---HHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred hccC---HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 4566 8888888888888888888888888888888888888888888776544
|
... |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0055 Score=56.48 Aligned_cols=128 Identities=9% Similarity=-0.045 Sum_probs=86.6
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHH----hCC-CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCc---------CCHH
Q 046312 232 TMLVVLSACTELGNLSLGKWVHLQLIE----RGT-VLNCQLGTALIDMYAKCGAVGCARLLFSRMEE---------INVW 297 (514)
Q Consensus 232 t~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---------~~~~ 297 (514)
.|..|-+.|.-.|+++.|....++-+. -|- ......+..+.+++.-.|+++.|.+.|+.... ....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 456666666677889988877665332 221 11245667788888889999999988876431 2234
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH----C-CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 046312 298 TWSAMILGLAQHGYAEEALELFSNMKN----S-SISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEH 359 (514)
Q Consensus 298 ~~~~li~~~~~~~~~~~a~~~~~~m~~----~-g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 359 (514)
+..+|...|.-..++++|+.++.+-+. . ...-....+.+|..++...|..++|..+.+...+
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 555677777777788888888766432 1 1223456788888888888888888877666554
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.3 Score=45.29 Aligned_cols=242 Identities=13% Similarity=0.036 Sum_probs=146.2
Q ss_pred hCCChhHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHH
Q 046312 207 ENLWLGEAVGYFVKMKDLGFEPDET--TMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCA 284 (514)
Q Consensus 207 ~~~~~~~a~~~~~~m~~~~~~p~~~--t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 284 (514)
-.|+++.|.+-|+.|... |... ....|.-..-+.|+.+.|.++-+..-..-.. -.-...+.++..|..|+++.|
T Consensus 132 ~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~A 207 (531)
T COG3898 132 LEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGA 207 (531)
T ss_pred hcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHH
Confidence 356666666666666542 2211 1112222234556666666665555443321 233455666777777777777
Q ss_pred HHHHHhcCc-----CCHHH--HHHHHHHH---HHcCChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHhccCcHHHHHHH
Q 046312 285 RLLFSRMEE-----INVWT--WSAMILGL---AQHGYAEEALELFSNMKNSSISPNYVT-FLGVLCACNHAGMVEDGYRY 353 (514)
Q Consensus 285 ~~~~~~~~~-----~~~~~--~~~li~~~---~~~~~~~~a~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~~~~~~a~~~ 353 (514)
+++++.-.. +++.- -..|+.+- .-..+...|...-.+..+ +.||..- -.....++.+.|+..++-.+
T Consensus 208 lkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~i 285 (531)
T COG3898 208 LKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKI 285 (531)
T ss_pred HHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhH
Confidence 777765432 33211 11122111 112345556555555544 5666432 23345778899999999999
Q ss_pred HHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHH--H--HHHHhCCCCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHH
Q 046312 354 FHEMEHVHGIKPMRIHYHTMADILARAGHLKEA--Y--TFIMNMPFQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLL 429 (514)
Q Consensus 354 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A--~--~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~ 429 (514)
++.+-+. .|....+..++ +.+.|+.... . +-+..|+ +.+..+...+..+....|+ +..+..--+.+.
T Consensus 286 lE~aWK~---ePHP~ia~lY~--~ar~gdta~dRlkRa~~L~slk-~nnaes~~~va~aAlda~e---~~~ARa~Aeaa~ 356 (531)
T COG3898 286 LETAWKA---EPHPDIALLYV--RARSGDTALDRLKRAKKLESLK-PNNAESSLAVAEAALDAGE---FSAARAKAEAAA 356 (531)
T ss_pred HHHHHhc---CCChHHHHHHH--HhcCCCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHhccc---hHHHHHHHHHHh
Confidence 9999865 56655554433 4466653221 1 1233333 3456777788889999999 999999999999
Q ss_pred hcCCCCCchHHHHHHHHHhc-CCHHHHHHHHHHHHh
Q 046312 430 ELEPRGSQNLVIVANKYAEV-GMWEKVSNVRRFMKN 464 (514)
Q Consensus 430 ~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~ 464 (514)
++.|.. .+|..|.+.-... |+-.++...+-+...
T Consensus 357 r~~pre-s~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 357 REAPRE-SAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred hhCchh-hHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 999984 5788888888655 999999998877654
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0078 Score=55.54 Aligned_cols=129 Identities=10% Similarity=0.012 Sum_probs=80.3
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHH---HHhhCCCC-chHHHHHHHHHHHhcCCHHHHHHHHHhCC--------CCCCH
Q 046312 332 VTFLGVLCACNHAGMVEDGYRYFHEM---EHVHGIKP-MRIHYHTMADILARAGHLKEAYTFIMNMP--------FQPNP 399 (514)
Q Consensus 332 ~~~~~ll~~~~~~~~~~~a~~~~~~~---~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~--------~~p~~ 399 (514)
..|..|-..|.-.|+++.|+...+.- .+.+|-.. ....+..|..+++-.|+++.|.+.++... .....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 34556666666678888877655432 22223222 23456677777888888888887776542 12234
Q ss_pred HHHHHHHHHHHhcCCCCcchHHHHHHHHH----HhcC--CCCCchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 046312 400 IVLRALLSASSIHDAKYQDGVGNEVRRRL----LELE--PRGSQNLVIVANKYAEVGMWEKVSNVRRFMK 463 (514)
Q Consensus 400 ~~~~~l~~~~~~~~~~~~~~~a~~~~~~~----~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 463 (514)
.+.-+|.+.|....+ +++|..+..+- .+++ --...++.+|+.+|...|..++|+.+.+.-.
T Consensus 276 QscYSLgNtytll~e---~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKE---VQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHhhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 455567777777667 77776665543 2332 1224567788888988888888888776544
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.023 Score=49.34 Aligned_cols=128 Identities=10% Similarity=-0.037 Sum_probs=78.0
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHH-----
Q 046312 97 WNNLIRGYAWSDRPREAVWVFIDMKRRGIKPTEFTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLV----- 171 (514)
Q Consensus 97 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li----- 171 (514)
-+.++..+.-.|.+.-.+.++.+..+...+.++.....+.+.-.+.||.+.|...|+...+..-..|..+.+.++
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 345556666666777777777777766555555566666666677777777777777665543344444443333
Q ss_pred HHHHcCCCHHHHHHHhhccCCC---ChhhHHHHHHHHHhCCChhHHHHHHHHHHHC
Q 046312 172 RFYGSCRRKRDACKVFDDMCER---SVVSWNVIITVCVENLWLGEAVGYFVKMKDL 224 (514)
Q Consensus 172 ~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 224 (514)
..|.-.+++..|...+++++.. |+..-|.-.-+..-.|+...|++.++.|++.
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3445556777777777666432 3444444444444556777777777777765
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0026 Score=43.53 Aligned_cols=52 Identities=15% Similarity=0.165 Sum_probs=24.0
Q ss_pred HHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 046312 340 ACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNM 393 (514)
Q Consensus 340 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 393 (514)
.+...|++++|...|+.+.+. .+-+...+..+..++.+.|++++|...|+++
T Consensus 6 ~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 57 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQALKQ--DPDNPEAWYLLGRILYQQGRYDEALAYYERA 57 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHHCC--STTHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344455555555555555432 1113444444455555555555555555444
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0011 Score=38.29 Aligned_cols=33 Identities=24% Similarity=0.424 Sum_probs=30.4
Q ss_pred HHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHH
Q 046312 425 RRRLLELEPRGSQNLVIVANKYAEVGMWEKVSN 457 (514)
Q Consensus 425 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 457 (514)
++++++++|+++.+|..|+.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 578899999999999999999999999999863
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.29 Score=42.48 Aligned_cols=177 Identities=13% Similarity=0.006 Sum_probs=83.7
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCC--CCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 046312 202 ITVCVENLWLGEAVGYFVKMKDLGF--EPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCG 279 (514)
Q Consensus 202 i~~~~~~~~~~~a~~~~~~m~~~~~--~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 279 (514)
...+...|++++|.+.|+++...-. +--......+..++.+.|+++.|...++..++.-+.....-+-..+.+.+...
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~ 91 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYK 91 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHH
Confidence 3445667777777777777776521 11123444566667777777777777777766543322222222222221111
Q ss_pred CHHHHHHHHHhcCcCC-------HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHH
Q 046312 280 AVGCARLLFSRMEEIN-------VWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYR 352 (514)
Q Consensus 280 ~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~ 352 (514)
...... ..+.| ...+..++.-|=.+....+|...+..+.+. .-.. -..+...|.+.|.+..|..
T Consensus 92 ~~~~~~-----~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~---la~~-e~~ia~~Y~~~~~y~aA~~ 162 (203)
T PF13525_consen 92 QIPGIL-----RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR---LAEH-ELYIARFYYKRGKYKAAII 162 (203)
T ss_dssp HHHHHH------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH---HHHH-HHHHHHHHHCTT-HHHHHH
T ss_pred hCccch-----hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH---HHHH-HHHHHHHHHHcccHHHHHH
Confidence 110000 00001 123444445555555555555555444331 0111 1124456777788888888
Q ss_pred HHHHHHHhhCCCCc-hHHHHHHHHHHHhcCCHHHHH
Q 046312 353 YFHEMEHVHGIKPM-RIHYHTMADILARAGHLKEAY 387 (514)
Q Consensus 353 ~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~ 387 (514)
-++.+.+.+.-.+. ......++.+|.+.|..+.|.
T Consensus 163 r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 163 RFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 88887776322221 233456667777777766443
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.012 Score=53.06 Aligned_cols=84 Identities=11% Similarity=0.005 Sum_probs=45.2
Q ss_pred HhcCCHHHHHHHHHhCC-CCCCH----HHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCC---CchHHHHHHHHHhc
Q 046312 378 ARAGHLKEAYTFIMNMP-FQPNP----IVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRG---SQNLVIVANKYAEV 449 (514)
Q Consensus 378 ~~~g~~~~A~~~~~~~~-~~p~~----~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~ 449 (514)
.+.|++++|...|+.+. ..|+. ..+..+...|...|+ ++.|...++.+.+..|++ ++++..++.+|...
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~---~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~ 230 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGK---KDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDK 230 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHc
Confidence 44455555555555553 22322 334445555555666 666666666666555543 23344455566666
Q ss_pred CCHHHHHHHHHHHHh
Q 046312 450 GMWEKVSNVRRFMKN 464 (514)
Q Consensus 450 g~~~~A~~~~~~m~~ 464 (514)
|+.++|.++++++.+
T Consensus 231 g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 231 GDTAKAKAVYQQVIK 245 (263)
T ss_pred CCHHHHHHHHHHHHH
Confidence 666666666665554
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0047 Score=42.83 Aligned_cols=59 Identities=15% Similarity=0.184 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCC-chHHHHHHHHHHHhcC-CHHHHHHHHHh
Q 046312 331 YVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKP-MRIHYHTMADILARAG-HLKEAYTFIMN 392 (514)
Q Consensus 331 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g-~~~~A~~~~~~ 392 (514)
..+|..+...+...|++++|...|++..+. .| +...|..+..++.+.| ++++|++.+++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~---~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~ 63 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIEL---DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEK 63 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH---STTHHHHHHHHHHHHHHTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence 344555555556666666666666666553 23 3445555555565665 45666555554
|
... |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.029 Score=43.99 Aligned_cols=52 Identities=6% Similarity=0.101 Sum_probs=42.4
Q ss_pred CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHH
Q 046312 326 SISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADIL 377 (514)
Q Consensus 326 g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 377 (514)
...|+..+..+++.+|+..|++..|.++++.+.+.++++.+..+|..|++-.
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 3567888888888888888888888888888888888888888888877643
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.11 Score=44.98 Aligned_cols=164 Identities=12% Similarity=0.029 Sum_probs=78.0
Q ss_pred HHHHhcCCHHHHHHHHHhcCc--CC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc---
Q 046312 273 DMYAKCGAVGCARLLFSRMEE--IN----VWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNH--- 343 (514)
Q Consensus 273 ~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~--- 343 (514)
..+...|++.+|.+.|+.+.. |+ ....-.++.++.+.|+++.|...+++.++.-..-....+...+.+.+.
T Consensus 13 ~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~ 92 (203)
T PF13525_consen 13 LEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQ 92 (203)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHh
Confidence 334455566666666655553 21 233444556666677777777777776653211111112212211111
Q ss_pred ----------cCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 046312 344 ----------AGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMPFQPNPIVLRALLSASSIHD 413 (514)
Q Consensus 344 ----------~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~ 413 (514)
.+....|...|+.+.+ -|=...-..+|...+..+...- ...-..+..-|.+.|
T Consensus 93 ~~~~~~~~~D~~~~~~A~~~~~~li~----------------~yP~S~y~~~A~~~l~~l~~~l-a~~e~~ia~~Y~~~~ 155 (203)
T PF13525_consen 93 IPGILRSDRDQTSTRKAIEEFEELIK----------------RYPNSEYAEEAKKRLAELRNRL-AEHELYIARFYYKRG 155 (203)
T ss_dssp HHHHH-TT---HHHHHHHHHHHHHHH----------------H-TTSTTHHHHHHHHHHHHHHH-HHHHHHHHHHHHCTT
T ss_pred CccchhcccChHHHHHHHHHHHHHHH----------------HCcCchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcc
Confidence 1122233444444443 3333333444444333332000 001112445577777
Q ss_pred CCCcchHHHHHHHHHHhcCCCCCc---hHHHHHHHHHhcCCHHHHH
Q 046312 414 AKYQDGVGNEVRRRLLELEPRGSQ---NLVIVANKYAEVGMWEKVS 456 (514)
Q Consensus 414 ~~~~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~ 456 (514)
. +..|..-++.+.+.-|+.+. +...++.+|.+.|..+.|.
T Consensus 156 ~---y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 156 K---YKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp ----HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred c---HHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 7 78888888888887777542 4557888888888877544
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.31 Score=45.93 Aligned_cols=74 Identities=16% Similarity=0.094 Sum_probs=46.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCcC-------CHHHHHHHHHHHHH---cCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 046312 269 TALIDMYAKCGAVGCARLLFSRMEEI-------NVWTWSAMILGLAQ---HGYAEEALELFSNMKNSSISPNYVTFLGVL 338 (514)
Q Consensus 269 ~~li~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll 338 (514)
-.++-+|-...+++...++.+.+... ....-....-++-+ .|+.++|++++..+....-.++..+|..+.
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 34455577777777777777777652 11122223344555 778888888888866655667777777766
Q ss_pred HHHh
Q 046312 339 CACN 342 (514)
Q Consensus 339 ~~~~ 342 (514)
..|.
T Consensus 225 RIyK 228 (374)
T PF13281_consen 225 RIYK 228 (374)
T ss_pred HHHH
Confidence 6553
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.046 Score=49.29 Aligned_cols=85 Identities=14% Similarity=0.137 Sum_probs=35.0
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCc-hHHHHHHHHHHHhcC
Q 046312 307 AQHGYAEEALELFSNMKNSSISPN----YVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPM-RIHYHTMADILARAG 381 (514)
Q Consensus 307 ~~~~~~~~a~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g 381 (514)
.+.|++++|...|+.+++. .|+ ...+..+..+|...|+++.|...|+.+.+.+.-.|. ...+..+...+...|
T Consensus 154 ~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g 231 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKG 231 (263)
T ss_pred HhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcC
Confidence 3344555555555554442 122 123334444444455555555555554443211111 222223333344444
Q ss_pred CHHHHHHHHHhC
Q 046312 382 HLKEAYTFIMNM 393 (514)
Q Consensus 382 ~~~~A~~~~~~~ 393 (514)
+.++|..+|+++
T Consensus 232 ~~~~A~~~~~~v 243 (263)
T PRK10803 232 DTAKAKAVYQQV 243 (263)
T ss_pred CHHHHHHHHHHH
Confidence 444444444443
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.67 Score=43.11 Aligned_cols=284 Identities=13% Similarity=0.016 Sum_probs=157.0
Q ss_pred cHHHHHHHHHh--CCCchHHHHHHHHHHHcCCCCCcchHHHHHHHH--hccCCchHHHHHHHHHHHhCCCCCcchHH---
Q 046312 96 PWNNLIRGYAW--SDRPREAVWVFIDMKRRGIKPTEFTYPFVLKAC--AEISGLNEGMQVQANVTKSGLDSDVYTNN--- 168 (514)
Q Consensus 96 ~~~~li~~~~~--~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--- 168 (514)
.|..|-.++.. .|+-..|.++-.+-.+. +.-|......++.+- .-.|+.+.|.+-|+.|... +.+-.
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d-----PEtRllGL 157 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD-----PETRLLGL 157 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC-----hHHHHHhH
Confidence 35555555443 45666666665554332 445666565565543 3458888888888888642 22221
Q ss_pred -HHHHHHHcCCCHHHHHHHhhccCC--C-ChhhHHHHHHHHHhCCChhHHHHHHHHHHHCC-CCCCHHH--HHHHHHHHh
Q 046312 169 -NLVRFYGSCRRKRDACKVFDDMCE--R-SVVSWNVIITVCVENLWLGEAVGYFVKMKDLG-FEPDETT--MLVVLSACT 241 (514)
Q Consensus 169 -~li~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~t--~~~ll~~~~ 241 (514)
.|.-.--+.|+.+.|...-+.... | =.-.+.+.+...+..|+|+.|+++++.-+... +.++..- -..|+.+-.
T Consensus 158 RgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA 237 (531)
T COG3898 158 RGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKA 237 (531)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHH
Confidence 122222456777777777666522 2 23466777888888888888888888766543 3444321 222332221
Q ss_pred c---cCChHHHHHHHHHHHHhCCCCchh-HHHHHHHHHHhcCCHHHHHHHHHhcCc--CCHHHHHHHHHHHHHcCChHHH
Q 046312 242 E---LGNLSLGKWVHLQLIERGTVLNCQ-LGTALIDMYAKCGAVGCARLLFSRMEE--INVWTWSAMILGLAQHGYAEEA 315 (514)
Q Consensus 242 ~---~g~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a 315 (514)
. ..+...|...-.+..+ +.|+.. .--.-..++.+.|+..++-.+++.+=+ |.+..+. +..+.+.|+ .+
T Consensus 238 ~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~--lY~~ar~gd--ta 311 (531)
T COG3898 238 MSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIAL--LYVRARSGD--TA 311 (531)
T ss_pred HHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHH--HHHHhcCCC--cH
Confidence 1 1234444444333333 233322 122334667777888887777777654 4444332 223334443 33
Q ss_pred HHHHHHHHH-CCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHH-hcCCHHHHHHHHHh
Q 046312 316 LELFSNMKN-SSISPN-YVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILA-RAGHLKEAYTFIMN 392 (514)
Q Consensus 316 ~~~~~~m~~-~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~ 392 (514)
..-+++... ..++|| ......+..+....|++..|..--+... ...|....|..|.+.-. ..|+-.++...+.+
T Consensus 312 ~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~---r~~pres~~lLlAdIeeAetGDqg~vR~wlAq 388 (531)
T COG3898 312 LDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAA---REAPRESAYLLLADIEEAETGDQGKVRQWLAQ 388 (531)
T ss_pred HHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHh---hhCchhhHHHHHHHHHhhccCchHHHHHHHHH
Confidence 333333332 124554 4455556667777777777766655554 33677777776666544 34777777777766
Q ss_pred CC
Q 046312 393 MP 394 (514)
Q Consensus 393 ~~ 394 (514)
..
T Consensus 389 av 390 (531)
T COG3898 389 AV 390 (531)
T ss_pred Hh
Confidence 64
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.75 Score=43.62 Aligned_cols=374 Identities=10% Similarity=0.028 Sum_probs=205.9
Q ss_pred HHHcccCC-CCCcccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCC
Q 046312 83 SILCNYVN-DSVPIPWNNLIRGYAWSDRPREAVWVFIDMKRRGIKPTEFTYPFVLKACAEISGLNEGMQVQANVTKSGLD 161 (514)
Q Consensus 83 ~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 161 (514)
++=+++.. +.|+.+|-.||.-+..+|..++..+.+++|..- .+--...|..-+++=....++..++.+|.+.....+
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l- 107 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSL- 107 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc-
Confidence 45555554 456789999999999999999999999999653 333445677777777778899999999998877643
Q ss_pred CCcchHHHHHHHHHcCCC---------HHHHHHHhhcc--CC-CChhhHHHHHHHH---------HhCCChhHHHHHHHH
Q 046312 162 SDVYTNNNLVRFYGSCRR---------KRDACKVFDDM--CE-RSVVSWNVIITVC---------VENLWLGEAVGYFVK 220 (514)
Q Consensus 162 ~~~~~~~~li~~~~~~~~---------~~~A~~~~~~~--~~-~~~~~~~~li~~~---------~~~~~~~~a~~~~~~ 220 (514)
+...|...++--.+.+. +-+|.++.-.. .+ .....|+..+..+ -.+.+.+...+.|.+
T Consensus 108 -~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~r 186 (660)
T COG5107 108 -NLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMR 186 (660)
T ss_pred -cHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHH
Confidence 45566666654444331 12232222111 12 2333444433321 112233444555555
Q ss_pred HHHCCCCC------CHHHHHHHHHHHhcc---C----ChHHHHHHHHHHH------------------------------
Q 046312 221 MKDLGFEP------DETTMLVVLSACTEL---G----NLSLGKWVHLQLI------------------------------ 257 (514)
Q Consensus 221 m~~~~~~p------~~~t~~~ll~~~~~~---g----~~~~a~~~~~~~~------------------------------ 257 (514)
|....+.- |-..|-.=++..... | -+-.|.+.++++.
T Consensus 187 al~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlN 266 (660)
T COG5107 187 ALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLN 266 (660)
T ss_pred HHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhh
Confidence 54321100 000111001000000 0 0111122222111
Q ss_pred ------HhCCCC----------------------chhHHHHHHHHHHhcCCHHHHHHHHHhcCcCCHHHHHHHHHHHHHc
Q 046312 258 ------ERGTVL----------------------NCQLGTALIDMYAKCGAVGCARLLFSRMEEINVWTWSAMILGLAQH 309 (514)
Q Consensus 258 ------~~~~~~----------------------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 309 (514)
+.++.. ...+|--....+...++-++|........+..+.....+-..|--.
T Consensus 267 wIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~spsL~~~lse~yel~ 346 (660)
T COG5107 267 WIKWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPSLTMFLSEYYELV 346 (660)
T ss_pred HhhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCchheeHHHHHhhc
Confidence 111111 1111111222334556677777776665431111111111222222
Q ss_pred CChHHHHHHHHHHHH--------------CCC---------------CCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHh
Q 046312 310 GYAEEALELFSNMKN--------------SSI---------------SPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHV 360 (514)
Q Consensus 310 ~~~~~a~~~~~~m~~--------------~g~---------------~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 360 (514)
++.+.+...|+...+ .+. .--...|...+.+..+..-++.|..+|-+..+.
T Consensus 347 nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~ 426 (660)
T COG5107 347 NDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKE 426 (660)
T ss_pred ccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhcc
Confidence 222222222222110 011 111234556666667778899999999999986
Q ss_pred hC-CCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCHHHH-HHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCC--
Q 046312 361 HG-IKPMRIHYHTMADILARAGHLKEAYTFIMNMP-FQPNPIVL-RALLSASSIHDAKYQDGVGNEVRRRLLELEPRG-- 435 (514)
Q Consensus 361 ~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~~~~~-~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~-- 435 (514)
+ +.+++..+++++..++ .|+...|..+|+--. .-||...| .-.+.-+...++ -+.|+.+++...+.-.+.
T Consensus 427 -~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~ind---e~naraLFetsv~r~~~~q~ 501 (660)
T COG5107 427 -GIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRIND---EENARALFETSVERLEKTQL 501 (660)
T ss_pred -CCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCc---HHHHHHHHHHhHHHHHHhhh
Confidence 6 6788899999998665 688899999998754 44555443 445556677788 788888888655432111
Q ss_pred CchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 046312 436 SQNLVIVANKYAEVGMWEKVSNVRRFMKN 464 (514)
Q Consensus 436 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 464 (514)
...|..++.--..-|+...|..+-++|.+
T Consensus 502 k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 502 KRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred hHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 35788999999999999988888777764
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=96.46 E-value=1.3 Score=45.63 Aligned_cols=55 Identities=11% Similarity=0.077 Sum_probs=24.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 046312 371 HTMADILARAGHLKEAYTFIMNMP--FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRL 428 (514)
Q Consensus 371 ~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~ 428 (514)
..-+..-.+.++++.+...+..|+ ..-...-.--+..++...|+ .+.|...++.+
T Consensus 316 e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~---~~~A~~~~~~~ 372 (644)
T PRK11619 316 ERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGR---KAEAEEILRQL 372 (644)
T ss_pred HHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCC---HHHHHHHHHHH
Confidence 333334445556665555555554 11111222223344444555 55555555554
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.11 Score=42.27 Aligned_cols=72 Identities=18% Similarity=0.193 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHH----hhCCCCchHHH
Q 046312 298 TWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEH----VHGIKPMRIHY 370 (514)
Q Consensus 298 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~p~~~~~ 370 (514)
+...++..+...|++++|..+.+.+.... +-+...|..+|.++...|+...|.++|+.+.+ ..|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 45556667778888888888888888753 44677788888888888888888888877653 35777776553
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.99 Score=42.92 Aligned_cols=411 Identities=9% Similarity=0.005 Sum_probs=223.2
Q ss_pred cChhHHHHHHHHHHHhC----CCCC-hHHHHHHHHhcccCCCCChHHHHHHHcccCCCCC-cccHHHHHHH--HHhCCCc
Q 046312 39 CSKKHLYQIHAQIQVSG----LQND-AQILKELVRFCTLSSSKNLTYARSILCNYVNDSV-PIPWNNLIRG--YAWSDRP 110 (514)
Q Consensus 39 ~~~~~~~~~~~~~~~~g----~~~~-~~~~~~ll~~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~li~~--~~~~g~~ 110 (514)
++...+..++..+.+.. +... ....+.++++|- ..+.+.....+..... .. ...|-.+..+ +.+.+.+
T Consensus 20 ~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAff---l~nld~Me~~l~~l~~-~~~~s~~l~LF~~L~~Y~~k~~ 95 (549)
T PF07079_consen 20 KKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFF---LNNLDLMEKQLMELRQ-QFGKSAYLPLFKALVAYKQKEY 95 (549)
T ss_pred hhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHH---HhhHHHHHHHHHHHHH-hcCCchHHHHHHHHHHHHhhhH
Confidence 45555666666554332 2222 455677888887 6777777766666552 22 2345555544 3467889
Q ss_pred hHHHHHHHHHHHc--CCCC------------CcchHHHHHHHHhccCCchHHHHHHHHHHHhCCC----CCcchHHHHHH
Q 046312 111 REAVWVFIDMKRR--GIKP------------TEFTYPFVLKACAEISGLNEGMQVQANVTKSGLD----SDVYTNNNLVR 172 (514)
Q Consensus 111 ~~a~~~~~~m~~~--~~~p------------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~~li~ 172 (514)
++|++.+.....+ +..| |...=+..+.++...|.+.++..+++++...=++ -+..+|+.++-
T Consensus 96 ~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vl 175 (549)
T PF07079_consen 96 RKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVL 175 (549)
T ss_pred HHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHH
Confidence 9999988877654 3222 1112244567788899999999999888765333 57778887666
Q ss_pred HHHcCCCHHH---------------HHHHhhccCC----------CChhhHHHHHHHHHhC--CChhHHHHHHHHHHHCC
Q 046312 173 FYGSCRRKRD---------------ACKVFDDMCE----------RSVVSWNVIITVCVEN--LWLGEAVGYFVKMKDLG 225 (514)
Q Consensus 173 ~~~~~~~~~~---------------A~~~~~~~~~----------~~~~~~~~li~~~~~~--~~~~~a~~~~~~m~~~~ 225 (514)
.+++.--++. +.-...+|.. |.......++....-. .+..--+++++.....-
T Consensus 176 mlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~y 255 (549)
T PF07079_consen 176 MLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFY 255 (549)
T ss_pred HHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhc
Confidence 6655422211 1111111111 1111111111111110 11122223333333333
Q ss_pred CCCCHHH-HHHHHHHHhccCChHHHHHHHHHHHHhCCCC----chhHHHHHHHHHHhcCCHHHHHHHHHhcC--cCCHHH
Q 046312 226 FEPDETT-MLVVLSACTELGNLSLGKWVHLQLIERGTVL----NCQLGTALIDMYAKCGAVGCARLLFSRME--EINVWT 298 (514)
Q Consensus 226 ~~p~~~t-~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~ 298 (514)
+.|+... ...+...+.. +.+++..+.+.+....+.+ -..++..++....+.++..+|.+.+.-+. +|+...
T Consensus 256 v~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~sv 333 (549)
T PF07079_consen 256 VHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDPRISV 333 (549)
T ss_pred cCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcchh
Confidence 4555432 2233333333 5556655555554443211 13466677777788888888888877654 343321
Q ss_pred HH-------HHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHH---HHhccCc-HHHHHHHHHHHHHhhCC
Q 046312 299 WS-------AMILGLAQ----HGYAEEALELFSNMKNSSISPNYVTFLGVLC---ACNHAGM-VEDGYRYFHEMEHVHGI 363 (514)
Q Consensus 299 ~~-------~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~---~~~~~~~-~~~a~~~~~~~~~~~~~ 363 (514)
-. .+-+..+. .-+...-+.+|++....++.-.. ....++. -+-+.|. -++|.++++.+.+-
T Consensus 334 s~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQ-Lvh~L~~~Ak~lW~~g~~dekalnLLk~il~f--- 409 (549)
T PF07079_consen 334 SEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQ-LVHYLVFGAKHLWEIGQCDEKALNLLKLILQF--- 409 (549)
T ss_pred hhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHH-HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHh---
Confidence 11 11122221 11234445666666654332221 1222222 2344454 78899999888752
Q ss_pred CC-chHHHHHHH----HHHHhc---CCHHHHHH---HHHhCCCCC----CHHHHHHHHHH--HHhcCCCCcchHHHHHHH
Q 046312 364 KP-MRIHYHTMA----DILARA---GHLKEAYT---FIMNMPFQP----NPIVLRALLSA--SSIHDAKYQDGVGNEVRR 426 (514)
Q Consensus 364 ~p-~~~~~~~li----~~~~~~---g~~~~A~~---~~~~~~~~p----~~~~~~~l~~~--~~~~~~~~~~~~a~~~~~ 426 (514)
.+ |..+-+.+. ..|..+ ..+.+.+. ..++..+.| +...-|.|..+ +..+|+ +.++.-...
T Consensus 410 t~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqge---y~kc~~ys~ 486 (549)
T PF07079_consen 410 TNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGE---YHKCYLYSS 486 (549)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhccc---HHHHHHHHH
Confidence 33 333333222 223221 22333322 233333333 44566667665 567889 999988888
Q ss_pred HHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 046312 427 RLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMK 463 (514)
Q Consensus 427 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 463 (514)
-+.++.| ++.+|..++-+.....++++|..++..+.
T Consensus 487 WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 487 WLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred HHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 8999999 58899999999999999999999999874
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.011 Score=52.65 Aligned_cols=103 Identities=14% Similarity=-0.039 Sum_probs=86.0
Q ss_pred CCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCCCc
Q 046312 396 QPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVG---MWEKVSNVRRFMKNVGLKKMKG 472 (514)
Q Consensus 396 ~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---~~~~A~~~~~~m~~~~~~~~~~ 472 (514)
+-|...|..|...|...|+ .+.|..++..+.++.|+++..+..++.++.... ...++..+++++..........
T Consensus 153 P~d~egW~~Lg~~ym~~~~---~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~ira 229 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGR---ASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRA 229 (287)
T ss_pred CCCchhHHHHHHHHHHhcc---hhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHH
Confidence 3478999999999999999 999999999999999999999999999886543 3678999999998765433333
Q ss_pred eeEEEECCeEEEEEecccCCcChHHHHHHHHHHHHHhh
Q 046312 473 MSWVELGGSIHRFYSGYDSQVELAGIYQILETLNLHMK 510 (514)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~ 510 (514)
.+ .+..++...|++++|...|+.|-+-.+
T Consensus 230 l~---------lLA~~afe~g~~~~A~~~Wq~lL~~lp 258 (287)
T COG4235 230 LS---------LLAFAAFEQGDYAEAAAAWQMLLDLLP 258 (287)
T ss_pred HH---------HHHHHHHHcccHHHHHHHHHHHHhcCC
Confidence 32 467789999999999999999977554
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.024 Score=39.73 Aligned_cols=59 Identities=19% Similarity=0.160 Sum_probs=32.8
Q ss_pred HHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCc
Q 046312 376 ILARAGHLKEAYTFIMNMP-FQP-NPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQ 437 (514)
Q Consensus 376 ~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 437 (514)
.|.+.+++++|.++++.+. ..| +...+......+...|+ ++.|.+.++.+.+..|+++.
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~---~~~A~~~l~~~l~~~p~~~~ 64 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGR---YEEALEDLERALELSPDDPD 64 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhcc---HHHHHHHHHHHHHHCCCcHH
Confidence 4555566666666665554 223 33444455555566666 66666666666666665443
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.023 Score=40.44 Aligned_cols=26 Identities=15% Similarity=0.204 Sum_probs=13.3
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHH
Q 046312 333 TFLGVLCACNHAGMVEDGYRYFHEME 358 (514)
Q Consensus 333 ~~~~ll~~~~~~~~~~~a~~~~~~~~ 358 (514)
++..+..++...|++++|.+++++..
T Consensus 48 ~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 48 TLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444455555555555555555443
|
... |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.044 Score=52.18 Aligned_cols=62 Identities=15% Similarity=0.138 Sum_probs=38.5
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCH----HHHHHHHHHHHhcCCCCcchHHHHHHHHHHhc
Q 046312 367 RIHYHTMADILARAGHLKEAYTFIMNMP-FQPNP----IVLRALLSASSIHDAKYQDGVGNEVRRRLLEL 431 (514)
Q Consensus 367 ~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~~----~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~ 431 (514)
...++.+..+|.+.|++++|+..|++.. ..|+. .+|..+..+|...|+ .++|.+.++++.+.
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr---~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREE---GKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHh
Confidence 4456666666666666666666666643 55553 235666666666666 66666666666665
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.13 Score=40.38 Aligned_cols=96 Identities=10% Similarity=-0.115 Sum_probs=55.9
Q ss_pred CcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCHHHHHHHhhc--cCCCChhhHHHHHHHH
Q 046312 128 TEFTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKRDACKVFDD--MCERSVVSWNVIITVC 205 (514)
Q Consensus 128 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~--~~~~~~~~~~~li~~~ 205 (514)
|..++..+|.++++.|+++...++++..- |+.++... ..+. +.. -..|+..+..+++.+|
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~~---------~~~~-------~~~~spl~Pt~~lL~AIv~sf 62 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGKK---------KEGD-------YPPSSPLYPTSRLLIAIVHSF 62 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCcc---------ccCc-------cCCCCCCCCCHHHHHHHHHHH
Confidence 34556666777777777776666665432 33222110 0000 111 1336677777777777
Q ss_pred HhCCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHh
Q 046312 206 VENLWLGEAVGYFVKMKDL-GFEPDETTMLVVLSACT 241 (514)
Q Consensus 206 ~~~~~~~~a~~~~~~m~~~-~~~p~~~t~~~ll~~~~ 241 (514)
+..|++..|+++++...+. +++.+..++..|++-+.
T Consensus 63 ~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 63 GYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred HhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 7777777777777776554 56666777777776554
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.5 Score=46.75 Aligned_cols=207 Identities=15% Similarity=0.191 Sum_probs=115.0
Q ss_pred HHHHHHHHHhCCCch--HHHHHHHHHHHcCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHH
Q 046312 97 WNNLIRGYAWSDRPR--EAVWVFIDMKRRGIKPTEFTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFY 174 (514)
Q Consensus 97 ~~~li~~~~~~g~~~--~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 174 (514)
++..-.+|.+-.+.. +.+.-+++|+++|-.|+... +...|+-.|.+.+|-++|.+ .|.. |.-+..|
T Consensus 601 f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~---~G~e------nRAlEmy 668 (1081)
T KOG1538|consen 601 FETARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR---SGHE------NRALEMY 668 (1081)
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH---cCch------hhHHHHH
Confidence 455555666554433 44555677888887787643 34556677788888777753 3321 2334444
Q ss_pred HcCCCHHHHHHHhhccCC--------------CChhhHHHHHHHHHhCCChhHHHHHHHH------HHHCCC---CCCHH
Q 046312 175 GSCRRKRDACKVFDDMCE--------------RSVVSWNVIITVCVENLWLGEAVGYFVK------MKDLGF---EPDET 231 (514)
Q Consensus 175 ~~~~~~~~A~~~~~~~~~--------------~~~~~~~~li~~~~~~~~~~~a~~~~~~------m~~~~~---~p~~~ 231 (514)
-....+|.|.+++..-.. .|+.-=.+....+...|+.++|..+.-+ +.+.+- ..+..
T Consensus 669 TDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere 748 (1081)
T KOG1538|consen 669 TDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAERE 748 (1081)
T ss_pred HHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhh
Confidence 444445555444433210 0111111233445556666666554321 111111 22334
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCc--CCHH-----------H
Q 046312 232 TMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEE--INVW-----------T 298 (514)
Q Consensus 232 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~-----------~ 298 (514)
+...+...+.+...+..|.++|..|-.. ..+++.....++|.+|..+-++..+ +++. -
T Consensus 749 ~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~Dr 819 (1081)
T KOG1538|consen 749 PLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDR 819 (1081)
T ss_pred HHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhh
Confidence 5555555555666777777777776433 3567788888899999888888776 3321 1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHH
Q 046312 299 WSAMILGLAQHGYAEEALELFSNMKN 324 (514)
Q Consensus 299 ~~~li~~~~~~~~~~~a~~~~~~m~~ 324 (514)
|...-.+|.+.|+-.+|.++++++-.
T Consensus 820 FeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 820 FEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 22233567777777777777777654
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.11 Score=45.74 Aligned_cols=109 Identities=15% Similarity=0.103 Sum_probs=79.6
Q ss_pred HHHhhccC--CCChhhHHHHHHHHHhC-----CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC------------
Q 046312 184 CKVFDDMC--ERSVVSWNVIITVCVEN-----LWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELG------------ 244 (514)
Q Consensus 184 ~~~~~~~~--~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g------------ 244 (514)
++.|.... ++|-.+|-+.+..+... +.++-....++.|.+-|+.-|..+|..|++.+-+..
T Consensus 54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~ 133 (406)
T KOG3941|consen 54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFL 133 (406)
T ss_pred hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHh
Confidence 44555554 56777787777776543 566667777888999999999999999998875543
Q ss_pred ----ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH-HHHHHHHHhcC
Q 046312 245 ----NLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAV-GCARLLFSRME 292 (514)
Q Consensus 245 ----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~ 292 (514)
+-+-+.+++++|...|+.||..+-..|++++.+.+-. .+..++.-.|.
T Consensus 134 HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 134 HYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred hCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 2234778999999999999999999999999887753 33444444443
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.15 Score=47.57 Aligned_cols=137 Identities=13% Similarity=-0.027 Sum_probs=97.8
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCC
Q 046312 303 ILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGH 382 (514)
Q Consensus 303 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 382 (514)
...|.+.|++..|..-|++.+.. +. +...-+.++.... . ..-..++..|.-++.+.++
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~------------l~-~~~~~~~ee~~~~-~--------~~k~~~~lNlA~c~lKl~~ 272 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSF------------LE-YRRSFDEEEQKKA-E--------ALKLACHLNLAACYLKLKE 272 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHH------------hh-ccccCCHHHHHHH-H--------HHHHHHhhHHHHHHHhhhh
Confidence 35677778888888777776542 00 1111111111111 1 1223356778888999999
Q ss_pred HHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHH-HHHHH
Q 046312 383 LKEAYTFIMNMP--FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEK-VSNVR 459 (514)
Q Consensus 383 ~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~-A~~~~ 459 (514)
+.+|++.-.+.. .++|....-.=..++...++ ++.|+..++++.+++|.|-.+-..|+.+-.+.....+ ..++|
T Consensus 273 ~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e---~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y 349 (397)
T KOG0543|consen 273 YKEAIESCNKVLELDPNNVKALYRRGQALLALGE---YDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMY 349 (397)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhcc---HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999888875 55677777777889999999 9999999999999999998888888888777766555 47888
Q ss_pred HHHHh
Q 046312 460 RFMKN 464 (514)
Q Consensus 460 ~~m~~ 464 (514)
..|-.
T Consensus 350 ~~mF~ 354 (397)
T KOG0543|consen 350 ANMFA 354 (397)
T ss_pred HHHhh
Confidence 88864
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.27 Score=45.09 Aligned_cols=162 Identities=10% Similarity=0.039 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH-CCCCCC---HHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCC--C--chHH
Q 046312 298 TWSAMILGLAQHGYAEEALELFSNMKN-SSISPN---YVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIK--P--MRIH 369 (514)
Q Consensus 298 ~~~~li~~~~~~~~~~~a~~~~~~m~~-~g~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--p--~~~~ 369 (514)
.|..+..++-+.-++.+++.+-+.-.. .|..|. .....++..+....+.++++.+.|+...+--.-. | ...+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 444555555555555555555544433 232231 1233445566667777888888877766421111 1 2346
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCC-------CCCCHHHHH-----HHHHHHHhcCCCCcchHHHHHHHHHHhcC-----
Q 046312 370 YHTMADILARAGHLKEAYTFIMNMP-------FQPNPIVLR-----ALLSASSIHDAKYQDGVGNEVRRRLLELE----- 432 (514)
Q Consensus 370 ~~~li~~~~~~g~~~~A~~~~~~~~-------~~p~~~~~~-----~l~~~~~~~~~~~~~~~a~~~~~~~~~~~----- 432 (514)
+..|...|.+..++++|..+..++. +.--..-|. .+.-++...|. +..|.+..+++.++.
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~---LgdA~e~C~Ea~klal~~Gd 241 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGR---LGDAMECCEEAMKLALQHGD 241 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcc---cccHHHHHHHHHHHHHHhCC
Confidence 7778888888888888776665542 111112222 23346677777 777888877776543
Q ss_pred -CCCCchHHHHHHHHHhcCCHHHHHHHHHHH
Q 046312 433 -PRGSQNLVIVANKYAEVGMWEKVSNVRRFM 462 (514)
Q Consensus 433 -p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 462 (514)
+........+++.|...|+.+.|..-|++.
T Consensus 242 ra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 242 RALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred hHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 112223448888898889888887777764
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.065 Score=43.71 Aligned_cols=68 Identities=16% Similarity=0.169 Sum_probs=51.6
Q ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHH-----hCCCCCCC
Q 046312 401 VLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMK-----NVGLKKMK 471 (514)
Q Consensus 401 ~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-----~~~~~~~~ 471 (514)
....++..+...|+ ++.+.+.++.+...+|-+...|..++.+|...|+..+|.++|++++ +.|+.|.+
T Consensus 64 ~~~~l~~~~~~~~~---~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~ 136 (146)
T PF03704_consen 64 ALERLAEALLEAGD---YEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSP 136 (146)
T ss_dssp HHHHHHHHHHHTT----HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----H
T ss_pred HHHHHHHHHHhccC---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCH
Confidence 34456667788888 9999999999999999988899999999999999999999999875 34665543
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.093 Score=47.42 Aligned_cols=159 Identities=13% Similarity=-0.043 Sum_probs=86.7
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHH----HHHHHhcCCH
Q 046312 308 QHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTM----ADILARAGHL 383 (514)
Q Consensus 308 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l----i~~~~~~g~~ 383 (514)
-.|+..+|...|+++++. .+.|...+...=.+|...|+.+.....++++.. ...+|...|..+ .-++..+|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 456666666677776664 344555555555666667777766666666664 334554433322 2334466777
Q ss_pred HHHHHHHHhCC-CC-CCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCC----CchHHHHHHHHHhcCCHHHHHH
Q 046312 384 KEAYTFIMNMP-FQ-PNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRG----SQNLVIVANKYAEVGMWEKVSN 457 (514)
Q Consensus 384 ~~A~~~~~~~~-~~-p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~A~~ 457 (514)
++|.+.-++.. ++ -|.-.-.++.......++ ..++.++..+-...-... ...|-..+-.+...+.++.|.+
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r---~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~ale 268 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGR---HKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALE 268 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcch---hhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHH
Confidence 77777666664 22 244444555555555666 555555555433221111 1234455555666667777777
Q ss_pred HHHHHHhCCCCCCCc
Q 046312 458 VRRFMKNVGLKKMKG 472 (514)
Q Consensus 458 ~~~~m~~~~~~~~~~ 472 (514)
+|++=.-..++...+
T Consensus 269 IyD~ei~k~l~k~Da 283 (491)
T KOG2610|consen 269 IYDREIWKRLEKDDA 283 (491)
T ss_pred HHHHHHHHHhhccch
Confidence 776554444444433
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=95.47 E-value=1.6 Score=41.23 Aligned_cols=72 Identities=11% Similarity=-0.029 Sum_probs=44.4
Q ss_pred HHHHHHHcCCCHHHHHHHhhccCCC-------ChhhHHHHHHHHHh---CCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 046312 169 NLVRFYGSCRRKRDACKVFDDMCER-------SVVSWNVIITVCVE---NLWLGEAVGYFVKMKDLGFEPDETTMLVVLS 238 (514)
Q Consensus 169 ~li~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~ 238 (514)
.++-.|....+++...++.+.+... ....-....-++.+ .|+.++|++++..+......++..||..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 3444577777777777777777332 11222233344555 6778888888877655555677777776665
Q ss_pred HH
Q 046312 239 AC 240 (514)
Q Consensus 239 ~~ 240 (514)
.|
T Consensus 226 Iy 227 (374)
T PF13281_consen 226 IY 227 (374)
T ss_pred HH
Confidence 54
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.77 Score=44.92 Aligned_cols=159 Identities=13% Similarity=0.100 Sum_probs=93.5
Q ss_pred HHHhCCChhHHHHHHHHHH-HCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHH
Q 046312 204 VCVENLWLGEAVGYFVKMK-DLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVG 282 (514)
Q Consensus 204 ~~~~~~~~~~a~~~~~~m~-~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 282 (514)
...-.++++++.++...-. -..+ +..-...++..+-+.|..+.|.++...- ..-.+...+.|+++
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~------------~~rFeLAl~lg~L~ 335 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLPNI--PKDQGQSIARFLEKKGYPELALQFVTDP------------DHRFELALQLGNLD 335 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-H------------HHHHHHHHHCT-HH
T ss_pred HHHHcCChhhhhhhhhhhhhcccC--ChhHHHHHHHHHHHCCCHHHHHhhcCCh------------HHHhHHHHhcCCHH
Confidence 3445677777666554111 1111 1334566777777777777777764332 12345566778888
Q ss_pred HHHHHHHhcCcCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhC
Q 046312 283 CARLLFSRMEEINVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHG 362 (514)
Q Consensus 283 ~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 362 (514)
.|.+.-++.. +...|..|.....+.|+++-|++.|.+..+ |..|+-.|.-.|+.+...++.+....+ |
T Consensus 336 ~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~-~ 403 (443)
T PF04053_consen 336 IALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER-G 403 (443)
T ss_dssp HHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT-T
T ss_pred HHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc-c
Confidence 8887766555 566888888888888888888888887653 455666677778877777776665543 2
Q ss_pred CCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 046312 363 IKPMRIHYHTMADILARAGHLKEAYTFIMNMP 394 (514)
Q Consensus 363 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 394 (514)
-++....++.-.|+.++..+++.+..
T Consensus 404 ------~~n~af~~~~~lgd~~~cv~lL~~~~ 429 (443)
T PF04053_consen 404 ------DINIAFQAALLLGDVEECVDLLIETG 429 (443)
T ss_dssp -------HHHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred ------CHHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 13444445556678888888777765
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.57 Score=45.79 Aligned_cols=159 Identities=11% Similarity=-0.001 Sum_probs=100.4
Q ss_pred HHHHhCCCchHHHHHHH--HHHHcCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCC
Q 046312 102 RGYAWSDRPREAVWVFI--DMKRRGIKPTEFTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRR 179 (514)
Q Consensus 102 ~~~~~~g~~~~a~~~~~--~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 179 (514)
....-.|+++++.++.+ ++.. .++ ..-.+.++..+.+.|..+.|+++... + ..-.+...+.|+
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~-~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D---------~---~~rFeLAl~lg~ 333 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLP-NIP--KDQGQSIARFLEKKGYPELALQFVTD---------P---DHRFELALQLGN 333 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS----------H---HHHHHHHHHCT-
T ss_pred HHHHHcCChhhhhhhhhhhhhcc-cCC--hhHHHHHHHHHHHCCCHHHHHhhcCC---------h---HHHhHHHHhcCC
Confidence 33445678888777665 2221 122 33477888888888999988877532 2 234566788899
Q ss_pred HHHHHHHhhccCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHh
Q 046312 180 KRDACKVFDDMCERSVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIER 259 (514)
Q Consensus 180 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 259 (514)
++.|.++.++.. +...|..|.....++|+++-|.+.|.+..+ +..|+-.|.-.|+.+.-.++.+.....
T Consensus 334 L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 334 LDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 999999887765 566899999999999999999988877542 455666666778887777777777666
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 046312 260 GTVLNCQLGTALIDMYAKCGAVGCARLLFSRME 292 (514)
Q Consensus 260 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 292 (514)
|- ++....++...|+.++..+++.+..
T Consensus 403 ~~------~n~af~~~~~lgd~~~cv~lL~~~~ 429 (443)
T PF04053_consen 403 GD------INIAFQAALLLGDVEECVDLLIETG 429 (443)
T ss_dssp T-------HHHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred cC------HHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 52 3445555566677777766655543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.34 E-value=4.1 Score=42.08 Aligned_cols=49 Identities=8% Similarity=-0.054 Sum_probs=26.7
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHH
Q 046312 405 LLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVR 459 (514)
Q Consensus 405 l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 459 (514)
++..++...+ . +++.......++.+|..|..++..+++.+..+.-.++.
T Consensus 711 l~~~~~q~~d---~---E~~it~~~~~g~~~p~l~~~~L~yF~~~~~i~~~~~~v 759 (933)
T KOG2114|consen 711 LMLYFQQISD---P---ETVITLCERLGKEDPSLWLHALKYFVSEESIEDCYEIV 759 (933)
T ss_pred HHHHHHHhhC---h---HHHHHHHHHhCccChHHHHHHHHHHhhhcchhhHHHHH
Confidence 3444555555 3 33333334445556667777777777777544444433
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.033 Score=34.39 Aligned_cols=40 Identities=23% Similarity=0.217 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHH
Q 046312 401 VLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVA 443 (514)
Q Consensus 401 ~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 443 (514)
++..+...|...|+ .++|.+.++.+.+..|+++.++..|+
T Consensus 3 ~~~~la~~~~~~G~---~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQ---PDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCC---HHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 45566677777777 77777777777777777776666554
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.29 E-value=3.8 Score=41.37 Aligned_cols=125 Identities=10% Similarity=-0.048 Sum_probs=66.1
Q ss_pred CCChHHHHHHHcccCCCCCcccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCC----cchHHHHHHHHhccCCchHHHH
Q 046312 75 SKNLTYARSILCNYVNDSVPIPWNNLIRGYAWSDRPREAVWVFIDMKRRGIKPT----EFTYPFVLKACAEISGLNEGMQ 150 (514)
Q Consensus 75 ~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~----~~~~~~ll~~~~~~g~~~~a~~ 150 (514)
-|.+++|.+++-.+. .+|. .|....+.|++-...++++. -|-..| ...|+.+...++....++.|.+
T Consensus 747 ~g~feeaek~yld~d-rrDL-----Aielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~ 817 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDAD-RRDL-----AIELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAK 817 (1189)
T ss_pred hcchhHhhhhhhccc-hhhh-----hHHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 389999999999888 6664 24445556666666555532 111111 1246666666666666666666
Q ss_pred HHHHHHHhCCCCCcchHHHHHHHHHcCCCHHHHHHHhhccCCCChhhHHHHHHHHHhCCChhHHHHHH
Q 046312 151 VQANVTKSGLDSDVYTNNNLVRFYGSCRRKRDACKVFDDMCERSVVSWNVIITVCVENLWLGEAVGYF 218 (514)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 218 (514)
.+..-.. ....+.++.+..++++-+.+.+.+++ +....-.+...+...|.-++|.+.|
T Consensus 818 yY~~~~~---------~e~~~ecly~le~f~~LE~la~~Lpe-~s~llp~~a~mf~svGMC~qAV~a~ 875 (1189)
T KOG2041|consen 818 YYSYCGD---------TENQIECLYRLELFGELEVLARTLPE-DSELLPVMADMFTSVGMCDQAVEAY 875 (1189)
T ss_pred HHHhccc---------hHhHHHHHHHHHhhhhHHHHHHhcCc-ccchHHHHHHHHHhhchHHHHHHHH
Confidence 6643221 12245555555555555555554433 2223333444444444444444433
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.28 E-value=1.8 Score=38.96 Aligned_cols=122 Identities=13% Similarity=0.093 Sum_probs=81.3
Q ss_pred HHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHH---HHHHHHhcCCCC
Q 046312 340 ACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMPFQPNPIVLRA---LLSASSIHDAKY 416 (514)
Q Consensus 340 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~---l~~~~~~~~~~~ 416 (514)
.....|++..|...|+..... .+-+...--.++.+|...|+.+.|..++..++..-...-+.. -+..+.+..+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~-- 218 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAA-- 218 (304)
T ss_pred hhhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhc--
Confidence 455678888888888888764 233355666788888999999999999999873322222222 2223333333
Q ss_pred cchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 046312 417 QDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNVGL 467 (514)
Q Consensus 417 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 467 (514)
..+..... .-...+|++...-..++..|...|+.++|.+.+=.+..++.
T Consensus 219 -~~~~~~l~-~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~ 267 (304)
T COG3118 219 -TPEIQDLQ-RRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDR 267 (304)
T ss_pred -CCCHHHHH-HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 22233333 33345788888888999999999999999888777765543
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.033 Score=39.62 Aligned_cols=61 Identities=10% Similarity=0.068 Sum_probs=37.4
Q ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHHHHhc----CCCC---CchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 046312 401 VLRALLSASSIHDAKYQDGVGNEVRRRLLEL----EPRG---SQNLVIVANKYAEVGMWEKVSNVRRFMKN 464 (514)
Q Consensus 401 ~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~----~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 464 (514)
+++.+...|...|+ +++|...++++.++ +++. ..++..++.+|...|++++|.+++++..+
T Consensus 7 ~~~~la~~~~~~~~---~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 7 AYNNLARVYRELGR---YDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTT----HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44445555555555 55555555555433 1111 33567888899999999999998887643
|
... |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.25 E-value=1.1 Score=34.92 Aligned_cols=64 Identities=13% Similarity=0.164 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCC
Q 046312 298 TWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGI 363 (514)
Q Consensus 298 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 363 (514)
.....+......|+-+.-.+++.++.+. -.+++...-.+..+|.+.|+..++.+++.++-++ |+
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek-G~ 151 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEK-GL 151 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT-T-
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh-ch
Confidence 4445566777778888877888777653 3566677777778888888888888888777765 54
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.15 Score=45.01 Aligned_cols=91 Identities=14% Similarity=0.166 Sum_probs=55.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCC-------CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCC---Cch
Q 046312 369 HYHTMADILARAGHLKEAYTFIMNMP-------FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRG---SQN 438 (514)
Q Consensus 369 ~~~~li~~~~~~g~~~~A~~~~~~~~-------~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~ 438 (514)
.|+.-+. +.+.|++.+|...|.... ..||..-| |..++...|+ ++.|...+..+.+-.|+. ++.
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yW--LGe~~y~qg~---y~~Aa~~f~~~~k~~P~s~KApda 217 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYW--LGESLYAQGD---YEDAAYIFARVVKDYPKSPKAPDA 217 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHH--HHHHHHhccc---chHHHHHHHHHHHhCCCCCCChHH
Confidence 3444433 335566666666665542 22333333 6666667777 666666666666655443 456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 046312 439 LVIVANKYAEVGMWEKVSNVRRFMKNV 465 (514)
Q Consensus 439 ~~~l~~~~~~~g~~~~A~~~~~~m~~~ 465 (514)
+..|+.+..+.|+.++|..+|+++..+
T Consensus 218 llKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 218 LLKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 777777777777777777777777654
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.22 E-value=1.9 Score=37.97 Aligned_cols=180 Identities=13% Similarity=0.045 Sum_probs=101.1
Q ss_pred CChHHHHHHHHhcccCCCCChHHHHHHHcccCC-CC-Cc---ccHHHHHHHHHhCCCchHHHHHHHHHHHc-CCCCCcch
Q 046312 58 NDAQILKELVRFCTLSSSKNLTYARSILCNYVN-DS-VP---IPWNNLIRGYAWSDRPREAVWVFIDMKRR-GIKPTEFT 131 (514)
Q Consensus 58 ~~~~~~~~ll~~~~~~~~g~~~~A~~~~~~~~~-~~-~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~ 131 (514)
|-...|+.-+.-+- .|++++|.+.|+.+.. .| ++ .+--.++-++-+.+++++|+..+++..+. +-.||. .
T Consensus 33 p~~~LY~~g~~~L~---~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~-d 108 (254)
T COG4105 33 PASELYNEGLTELQ---KGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA-D 108 (254)
T ss_pred CHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh-h
Confidence 55567777776654 8999999999988863 12 22 22334566777889999999988887664 223333 4
Q ss_pred HHHHHHHHhcc-------CCchHHHHHHH---HHHHhCCCCCcchHHHHHHHHHcCCCHHHHHHHhhccCCCChhh--HH
Q 046312 132 YPFVLKACAEI-------SGLNEGMQVQA---NVTKSGLDSDVYTNNNLVRFYGSCRRKRDACKVFDDMCERSVVS--WN 199 (514)
Q Consensus 132 ~~~ll~~~~~~-------g~~~~a~~~~~---~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~--~~ 199 (514)
|..-|.+++.. +|...+.+.+. ++++. -||.. -...|..-...+ .|... =-
T Consensus 109 Y~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~r--yPnS~-------------Ya~dA~~~i~~~--~d~LA~~Em 171 (254)
T COG4105 109 YAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQR--YPNSR-------------YAPDAKARIVKL--NDALAGHEM 171 (254)
T ss_pred HHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHH--CCCCc-------------chhhHHHHHHHH--HHHHHHHHH
Confidence 55555555432 23333333333 33332 22211 001111111110 01111 12
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHCCCCCCH---HHHHHHHHHHhccCChHHHHHHHHHHHHh
Q 046312 200 VIITVCVENLWLGEAVGYFVKMKDLGFEPDE---TTMLVVLSACTELGNLSLGKWVHLQLIER 259 (514)
Q Consensus 200 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~---~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 259 (514)
.+.+-|.+.|.+..|..-+++|.+. .+-+. ..+-.+..+|...|-.++|.+.-+-+...
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 3456788999999999999999887 22222 34555667777788888777765555443
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.12 E-value=3.9 Score=40.65 Aligned_cols=146 Identities=14% Similarity=0.111 Sum_probs=67.0
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHcC-CCCCc-----chHHHHHHHHhc----cCCchHHHHHHHHHHHhCCCCCcchH
Q 046312 98 NNLIRGYAWSDRPREAVWVFIDMKRRG-IKPTE-----FTYPFVLKACAE----ISGLNEGMQVQANVTKSGLDSDVYTN 167 (514)
Q Consensus 98 ~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p~~-----~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~ 167 (514)
..++....=.|+-+.+++.+.+..+.+ +.-.. ..|+.++..++. ..+.+.|.++++.+.+. -|+...|
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lf 269 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALF 269 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHH
Confidence 344444555566666666665544321 11100 122222222222 23455566666666554 3444444
Q ss_pred HHH-HHHHHcCCCHHHHHHHhhccCCC-------ChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 046312 168 NNL-VRFYGSCRRKRDACKVFDDMCER-------SVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSA 239 (514)
Q Consensus 168 ~~l-i~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~ 239 (514)
... .+.+...|++++|.+.|++.... ....+--+.-++.-..+|++|.+.|..+.+.. ..+..+|..+..+
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~ 348 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAA 348 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHH
Confidence 322 23445556666666666654221 11223333334555566666666666666543 3334444433333
Q ss_pred H-hccCCh
Q 046312 240 C-TELGNL 246 (514)
Q Consensus 240 ~-~~~g~~ 246 (514)
| ...|+.
T Consensus 349 c~~~l~~~ 356 (468)
T PF10300_consen 349 CLLMLGRE 356 (468)
T ss_pred HHHhhccc
Confidence 3 234444
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.11 E-value=3.9 Score=40.56 Aligned_cols=87 Identities=11% Similarity=0.042 Sum_probs=38.5
Q ss_pred HhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHh-ccCCchHHHHHHHHHHHh-CCC-CCcchHHHHHHHHHcCCCHH
Q 046312 105 AWSDRPREAVWVFIDMKRRGIKPTEFTYPFVLKACA-EISGLNEGMQVQANVTKS-GLD-SDVYTNNNLVRFYGSCRRKR 181 (514)
Q Consensus 105 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~-~~g~~~~a~~~~~~~~~~-~~~-~~~~~~~~li~~~~~~~~~~ 181 (514)
.+.|..+.+.++|++-.+. ++.+...|......+. ..|+.+.....|+.+... |.. .....|...|..-..++++.
T Consensus 90 ~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k 168 (577)
T KOG1258|consen 90 YKLGNAENSVKVFERGVQA-IPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWK 168 (577)
T ss_pred HHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHH
Confidence 3445555555555555442 3333334433333222 234444444555444432 111 12334444444444455555
Q ss_pred HHHHHhhccCC
Q 046312 182 DACKVFDDMCE 192 (514)
Q Consensus 182 ~A~~~~~~~~~ 192 (514)
....+++++.+
T Consensus 169 ~v~~iyeRile 179 (577)
T KOG1258|consen 169 RVANIYERILE 179 (577)
T ss_pred HHHHHHHHHHh
Confidence 55555555543
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.08 E-value=2.2 Score=37.60 Aligned_cols=71 Identities=14% Similarity=-0.020 Sum_probs=38.4
Q ss_pred HHhCCChhHHHHHHHHHHHCC--CCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 046312 205 CVENLWLGEAVGYFVKMKDLG--FEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMY 275 (514)
Q Consensus 205 ~~~~~~~~~a~~~~~~m~~~~--~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 275 (514)
-.+.|++++|.+.|+.+.... -+-...+...++.++-+.++++.|....++..+........-|-..|.++
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgL 116 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGL 116 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHH
Confidence 345667777777777666542 12223445555556666677777776666666654333333333333333
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.68 Score=36.87 Aligned_cols=58 Identities=16% Similarity=0.128 Sum_probs=35.7
Q ss_pred HHhcCCHHHHHHHHHhCC----CCC-CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCc
Q 046312 377 LARAGHLKEAYTFIMNMP----FQP-NPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQ 437 (514)
Q Consensus 377 ~~~~g~~~~A~~~~~~~~----~~p-~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 437 (514)
..+.|++++|.+.|+.+. ..| ....--.|+.++.+.++ ++.|...++.++++.|.++.
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~---y~~A~a~~~rFirLhP~hp~ 82 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGD---YEEAIAAYDRFIRLHPTHPN 82 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccC---HHHHHHHHHHHHHhCCCCCC
Confidence 445667777777666664 111 23444456666777777 77777777777777766654
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.04 E-value=1.6 Score=43.27 Aligned_cols=159 Identities=15% Similarity=0.051 Sum_probs=94.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCH-----HHHHHHHHHHhc----cCcHHHHHHHHHHHHHhhCCCCchH
Q 046312 299 WSAMILGLAQHGYAEEALELFSNMKNSS-ISPNY-----VTFLGVLCACNH----AGMVEDGYRYFHEMEHVHGIKPMRI 368 (514)
Q Consensus 299 ~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~-----~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~p~~~ 368 (514)
...+++...-.|+-+.+++.+.+..+.+ +.-.. ..|..++..++. ....+.|.++++.+.++ -|+..
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s~ 267 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNSA 267 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCcH
Confidence 3444555555667777777766655432 22211 123333333332 45667788888888765 56665
Q ss_pred HHHHH-HHHHHhcCCHHHHHHHHHhCC------CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHH-
Q 046312 369 HYHTM-ADILARAGHLKEAYTFIMNMP------FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLV- 440 (514)
Q Consensus 369 ~~~~l-i~~~~~~g~~~~A~~~~~~~~------~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~- 440 (514)
.|... .+.+...|++++|.+.|++.. .+-....+.-+...+....+ +++|.+.+..+.+.+.-....|.
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~---w~~A~~~f~~L~~~s~WSka~Y~Y 344 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHD---WEEAAEYFLRLLKESKWSKAFYAY 344 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHch---HHHHHHHHHHHHhccccHHHHHHH
Confidence 55433 345566788888888888653 11123445555666777777 88888888777776544333444
Q ss_pred HHHHHHHhcCCH-------HHHHHHHHHHH
Q 046312 441 IVANKYAEVGMW-------EKVSNVRRFMK 463 (514)
Q Consensus 441 ~l~~~~~~~g~~-------~~A~~~~~~m~ 463 (514)
..+-++...|+. ++|.+++++..
T Consensus 345 ~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 345 LAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 455555677777 77777777765
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.29 Score=43.35 Aligned_cols=95 Identities=16% Similarity=0.063 Sum_probs=55.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCc-hHHHHHHHH
Q 046312 299 WSAMILGLAQHGYAEEALELFSNMKNSSIS--PNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPM-RIHYHTMAD 375 (514)
Q Consensus 299 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~ 375 (514)
|+.-+.. .+.|++..|..-|...++.... -....+-.|..++...|+++.|..+|..+.+.++-.|. +..+--|..
T Consensus 145 Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 145 YNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 4444433 3455577777777776664211 11233455666677777777777777776665444444 355556666
Q ss_pred HHHhcCCHHHHHHHHHhCC
Q 046312 376 ILARAGHLKEAYTFIMNMP 394 (514)
Q Consensus 376 ~~~~~g~~~~A~~~~~~~~ 394 (514)
...+.|+.++|..+|+++.
T Consensus 224 ~~~~l~~~d~A~atl~qv~ 242 (262)
T COG1729 224 SLGRLGNTDEACATLQQVI 242 (262)
T ss_pred HHHHhcCHHHHHHHHHHHH
Confidence 6666777777777766664
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=94.96 E-value=3.6 Score=39.36 Aligned_cols=67 Identities=10% Similarity=-0.034 Sum_probs=41.2
Q ss_pred CCCChHHHHHHHcccCCC--CCc---------------ccHHHHHHHHHhCCCchHHHHHHHHHHHcCC----CCCcchH
Q 046312 74 SSKNLTYARSILCNYVND--SVP---------------IPWNNLIRGYAWSDRPREAVWVFIDMKRRGI----KPTEFTY 132 (514)
Q Consensus 74 ~~g~~~~A~~~~~~~~~~--~~~---------------~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~----~p~~~~~ 132 (514)
+.+.++.|...|..-.++ .+. .-=+..+..+...|++.++..++++|...=. .-+..+|
T Consensus 91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~y 170 (549)
T PF07079_consen 91 KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMY 170 (549)
T ss_pred HhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHH
Confidence 678888887776543210 100 1123456677888999998888888765433 3677777
Q ss_pred HHHHHHHh
Q 046312 133 PFVLKACA 140 (514)
Q Consensus 133 ~~ll~~~~ 140 (514)
+.++-.++
T Consensus 171 d~~vlmls 178 (549)
T PF07079_consen 171 DRAVLMLS 178 (549)
T ss_pred HHHHHHHh
Confidence 77544443
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.72 Score=44.31 Aligned_cols=142 Identities=11% Similarity=0.063 Sum_probs=82.9
Q ss_pred ChHHHHHHHHHHHH-CCCCCC-HHHHHHHHHHHhcc---------CcHHHHHHHHHHHHHhhCCCC-chHHHHHHHHHHH
Q 046312 311 YAEEALELFSNMKN-SSISPN-YVTFLGVLCACNHA---------GMVEDGYRYFHEMEHVHGIKP-MRIHYHTMADILA 378 (514)
Q Consensus 311 ~~~~a~~~~~~m~~-~g~~p~-~~~~~~ll~~~~~~---------~~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~ 378 (514)
..+.|+.+|.+... +.+.|+ ...|..+..++... .+..+|.++-+...+. .| |......+..++.
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAvel---d~~Da~a~~~~g~~~~ 349 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDI---TTVDGKILAIMGLITG 349 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHH
Confidence 34667778888773 234555 44566555544332 2334555555555542 33 3444555555556
Q ss_pred hcCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHH--HHHHHHHhcCCHHH
Q 046312 379 RAGHLKEAYTFIMNMP-FQPN-PIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLV--IVANKYAEVGMWEK 454 (514)
Q Consensus 379 ~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~--~l~~~~~~~g~~~~ 454 (514)
-.|+.+.|..+|++.. ..|| ..+|......+...|+ .++|.+.++++.+++|....+-. ..++.|+..+ .++
T Consensus 350 ~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~---~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~ 425 (458)
T PRK11906 350 LSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEK---IEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP-LKN 425 (458)
T ss_pred hhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCC---HHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc-hhh
Confidence 6677888888888876 5565 3444444455666777 88888888888888876543322 3334566554 455
Q ss_pred HHHHH
Q 046312 455 VSNVR 459 (514)
Q Consensus 455 A~~~~ 459 (514)
|++++
T Consensus 426 ~~~~~ 430 (458)
T PRK11906 426 NIKLY 430 (458)
T ss_pred hHHHH
Confidence 55554
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.55 E-value=0.43 Score=42.27 Aligned_cols=97 Identities=14% Similarity=0.192 Sum_probs=74.8
Q ss_pred HHHHHhcC--cCCHHHHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC------------
Q 046312 285 RLLFSRME--EINVWTWSAMILGLAQH-----GYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAG------------ 345 (514)
Q Consensus 285 ~~~~~~~~--~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~------------ 345 (514)
+..|..+. +.|-.+|.+.+..+... +.++-....++.|.+-|+.-|..+|+.|+..+-+..
T Consensus 54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~ 133 (406)
T KOG3941|consen 54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFL 133 (406)
T ss_pred hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHh
Confidence 44555555 46777888877777543 566767777888999999999999999998776542
Q ss_pred ----cHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCC
Q 046312 346 ----MVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGH 382 (514)
Q Consensus 346 ----~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 382 (514)
+-+-+..++++|.. +|+.||..+-..|+.++.+.+-
T Consensus 134 HYP~QQ~C~I~vLeqME~-hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 134 HYPQQQNCAIKVLEQMEW-HGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred hCchhhhHHHHHHHHHHH-cCCCCchHHHHHHHHHhccccc
Confidence 33457789999988 5999999999999999988765
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.54 E-value=2.7 Score=35.98 Aligned_cols=180 Identities=13% Similarity=0.078 Sum_probs=102.2
Q ss_pred hcCCHHHHHHHHHhcC--cCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHH
Q 046312 277 KCGAVGCARLLFSRME--EIN-VWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRY 353 (514)
Q Consensus 277 ~~g~~~~A~~~~~~~~--~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~ 353 (514)
..|-++-|+--|.... .|+ +..||-+.--+...|+++.|.+.|+...+....-+-...|.-| ++.-.|++..|.+-
T Consensus 77 SlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~d 155 (297)
T COG4785 77 SLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQDD 155 (297)
T ss_pred hhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHHH
Confidence 3444444444444433 233 4678888888888899999999998888754222222223222 23345888888776
Q ss_pred HHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHH-HhCCCCCCHHHHHHHHHHHH-hcCCCCcchHHHHHHHHHHhc
Q 046312 354 FHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFI-MNMPFQPNPIVLRALLSASS-IHDAKYQDGVGNEVRRRLLEL 431 (514)
Q Consensus 354 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~-~~~~~~p~~~~~~~l~~~~~-~~~~~~~~~~a~~~~~~~~~~ 431 (514)
+...-+.-.-.|=...|..++. +.-++.+|..-+ ++.. ..|..-|...+-.+. ..-. .+.+++.+..-
T Consensus 156 ~~~fYQ~D~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~-~~d~e~WG~~iV~~yLgkiS------~e~l~~~~~a~ 225 (297)
T COG4785 156 LLAFYQDDPNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAE-KSDKEQWGWNIVEFYLGKIS------EETLMERLKAD 225 (297)
T ss_pred HHHHHhcCCCChHHHHHHHHHH---hhCCHHHHHHHHHHHHH-hccHhhhhHHHHHHHHhhcc------HHHHHHHHHhh
Confidence 6665543223333334433332 233556665443 4443 344455544443332 2222 23333444333
Q ss_pred CCCC-------CchHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 046312 432 EPRG-------SQNLVIVANKYAEVGMWEKVSNVRRFMKNVGL 467 (514)
Q Consensus 432 ~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 467 (514)
..++ ..+|.-|+.-|...|..++|..+|+-....++
T Consensus 226 a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 226 ATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence 3232 34688999999999999999999998876554
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.48 Score=45.43 Aligned_cols=62 Identities=16% Similarity=0.049 Sum_probs=48.3
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCch----HHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 046312 330 NYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMR----IHYHTMADILARAGHLKEAYTFIMNMP 394 (514)
Q Consensus 330 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~~~ 394 (514)
+...++.+..+|...|++++|...|++..+. .|+. ..|..+..+|...|+.++|++.++++.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL---~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrAL 139 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL---NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTAL 139 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3566777888888888888888888887753 6663 347778888888888888888888875
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.68 Score=43.36 Aligned_cols=117 Identities=12% Similarity=0.072 Sum_probs=76.7
Q ss_pred HHHHhcCCHHHHHHHHHhcCc------------------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH
Q 046312 273 DMYAKCGAVGCARLLFSRMEE------------------INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTF 334 (514)
Q Consensus 273 ~~~~~~g~~~~A~~~~~~~~~------------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 334 (514)
+.|.+.|++..|..-|++... .-..+++.+..++.+.+++.+|++.-.+.++.+ ++|....
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KAL 294 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKAL 294 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHH
Confidence 456666666666666655331 223567778888888888888888888888764 5566666
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHH-HHHHHHHHhcCCHH-HHHHHHHhC
Q 046312 335 LGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHY-HTMADILARAGHLK-EAYTFIMNM 393 (514)
Q Consensus 335 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~-~~li~~~~~~g~~~-~A~~~~~~~ 393 (514)
-.-..+|...|+++.|+..|+++.+. .|+.... +.|+.+-.+..... ...++|..|
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k~---~P~Nka~~~el~~l~~k~~~~~~kekk~y~~m 352 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALKL---EPSNKAARAELIKLKQKIREYEEKEKKMYANM 352 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677888888999999988888853 6654433 34444333333333 335566666
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.32 E-value=2.3 Score=34.23 Aligned_cols=42 Identities=24% Similarity=0.116 Sum_probs=20.6
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 046312 235 VVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAK 277 (514)
Q Consensus 235 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 277 (514)
.++..+...+.......+++.+...+. .+...++.++..|++
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~ 53 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHH
Confidence 344444444555555555555555442 344455555555544
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.29 E-value=0.54 Score=36.40 Aligned_cols=89 Identities=18% Similarity=0.115 Sum_probs=56.2
Q ss_pred HHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcC-CCC---CchHHHHHHHHHhc
Q 046312 376 ILARAGHLKEAYTFIMNMP--FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELE-PRG---SQNLVIVANKYAEV 449 (514)
Q Consensus 376 ~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~-p~~---~~~~~~l~~~~~~~ 449 (514)
+++..|+.+.|++.|.+.. .+-....||.-..++...|+ .++|..-++++.++. +.. ..+|..-+..|...
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~---~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGD---DEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCC---hHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 4556677777777776654 33355667777777777777 666666666666654 221 12455566667777
Q ss_pred CCHHHHHHHHHHHHhCCC
Q 046312 450 GMWEKVSNVRRFMKNVGL 467 (514)
Q Consensus 450 g~~~~A~~~~~~m~~~~~ 467 (514)
|+.+.|..-|+..-+.|.
T Consensus 129 g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLGS 146 (175)
T ss_pred CchHHHHHhHHHHHHhCC
Confidence 777777777776666554
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=94.28 E-value=1.5 Score=36.19 Aligned_cols=136 Identities=16% Similarity=0.081 Sum_probs=80.1
Q ss_pred HHHHHHHHHcCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCHHHHHHHhhccCCC
Q 046312 114 VWVFIDMKRRGIKPTEFTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKRDACKVFDDMCER 193 (514)
Q Consensus 114 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 193 (514)
+++++.+.+.|++|+...|..+++.+.+.|++....+ ++..++-+|.......+-.+. +....+.++--.|..+
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q----llq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ----LLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH
Confidence 4555566677888888888888999888888665444 445665566544443332222 2233333333333332
Q ss_pred ChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHh
Q 046312 194 SVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIER 259 (514)
Q Consensus 194 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 259 (514)
=...+..++..+...|++-+|+++.+..... +......++.+..+.+|...-..+++-..+.
T Consensus 88 L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 88 LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 2335667777888888888888887765322 1122244566666666665555555555443
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.23 E-value=2.4 Score=34.10 Aligned_cols=86 Identities=7% Similarity=0.082 Sum_probs=41.1
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHc
Q 046312 97 WNNLIRGYAWSDRPREAVWVFIDMKRRGIKPTEFTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGS 176 (514)
Q Consensus 97 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 176 (514)
-..++..+...+.+.....+++.+...+ ..+...++.++..+++.+ .+.....+.. ..+.......++.|.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~ 81 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHH
Confidence 4455555555566666666666665554 244445556666655442 2222222221 1122333344555555
Q ss_pred CCCHHHHHHHhhcc
Q 046312 177 CRRKRDACKVFDDM 190 (514)
Q Consensus 177 ~~~~~~A~~~~~~~ 190 (514)
.+.++++..++.++
T Consensus 82 ~~l~~~~~~l~~k~ 95 (140)
T smart00299 82 AKLYEEAVELYKKD 95 (140)
T ss_pred cCcHHHHHHHHHhh
Confidence 55555554444443
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=94.02 E-value=5.1 Score=37.16 Aligned_cols=162 Identities=13% Similarity=0.086 Sum_probs=90.8
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHC-CCCCC---HHHHHHHHHHHhccCChHHHHHHHHHHHHhC-----CCCchhH
Q 046312 197 SWNVIITVCVENLWLGEAVGYFVKMKDL-GFEPD---ETTMLVVLSACTELGNLSLGKWVHLQLIERG-----TVLNCQL 267 (514)
Q Consensus 197 ~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~---~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~ 267 (514)
.|-.+.+++-+.-++.+++.+-+.-... |..|. -....++-.++...+.++++.+.|+...+-- ......+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 3444555555555555555554443322 22221 1223345556666677777777777665431 2234567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCc-------CCHH-HH-----HHHHHHHHHcCChHHHHHHHHHHHH----CCCCCC
Q 046312 268 GTALIDMYAKCGAVGCARLLFSRMEE-------INVW-TW-----SAMILGLAQHGYAEEALELFSNMKN----SSISPN 330 (514)
Q Consensus 268 ~~~li~~~~~~g~~~~A~~~~~~~~~-------~~~~-~~-----~~li~~~~~~~~~~~a~~~~~~m~~----~g~~p~ 330 (514)
+-.|...|.+..++++|.-+..+..+ .|.. .| ..|.-++...|+...|.+.-++..+ .|-++.
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~ 244 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL 244 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH
Confidence 77888888888888877655544332 2221 12 2234456677777777777766543 342222
Q ss_pred -HHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 046312 331 -YVTFLGVLCACNHAGMVEDGYRYFHEME 358 (514)
Q Consensus 331 -~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 358 (514)
......+...|-..|+.+.|+.-|+...
T Consensus 245 ~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 245 QARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 2334555667777888888877777654
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=93.98 E-value=0.24 Score=40.36 Aligned_cols=91 Identities=9% Similarity=-0.184 Sum_probs=74.5
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCceeEEEECCeEEE
Q 046312 405 LLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNVGLKKMKGMSWVELGGSIHR 484 (514)
Q Consensus 405 l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~ 484 (514)
....+...|+ +++|+.++..+.-.+|-++..+..|+.++-..|++++|...|...-..+.. +|... ..
T Consensus 43 ~Ay~~y~~Gk---~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~--------f~ 110 (165)
T PRK15331 43 HAYEFYNQGR---LDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPV--------FF 110 (165)
T ss_pred HHHHHHHCCC---HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCcc--------ch
Confidence 3445677899 999999999999999999999999999999999999999999988766542 22222 24
Q ss_pred EEecccCCcChHHHHHHHHHHHH
Q 046312 485 FYSGYDSQVELAGIYQILETLNL 507 (514)
Q Consensus 485 ~~~~~~~~~~~~~a~~~~~~m~~ 507 (514)
....+...|+.+.|..-|+..+.
T Consensus 111 agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 111 TGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHh
Confidence 56678889999999998887766
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.85 E-value=1.6 Score=34.84 Aligned_cols=51 Identities=12% Similarity=0.051 Sum_probs=29.2
Q ss_pred HHhcCCHHHHHHHHHhcCc--C----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 046312 275 YAKCGAVGCARLLFSRMEE--I----NVWTWSAMILGLAQHGYAEEALELFSNMKNS 325 (514)
Q Consensus 275 ~~~~g~~~~A~~~~~~~~~--~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 325 (514)
..+.|++++|.+.|+.+.. | .......++.+|.+.+++++|...+++.++.
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 3445566666666655553 1 2234445566666666666666666666664
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=93.54 E-value=19 Score=42.18 Aligned_cols=315 Identities=10% Similarity=0.000 Sum_probs=169.1
Q ss_pred HHHHHhccCCchHHHHHHHHHHHhCC--CCCcchHHHHHHHHHcCCCHHHHHHHhhc-cCCCChhhHHHHHHHHHhCCCh
Q 046312 135 VLKACAEISGLNEGMQVQANVTKSGL--DSDVYTNNNLVRFYGSCRRKRDACKVFDD-MCERSVVSWNVIITVCVENLWL 211 (514)
Q Consensus 135 ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~A~~~~~~-~~~~~~~~~~~li~~~~~~~~~ 211 (514)
+..+--+.+.+.+|...++.-..... .-....|..+...|+.-+++|...-+... ...++ .++ -|......|+|
T Consensus 1389 La~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s--l~~-qil~~e~~g~~ 1465 (2382)
T KOG0890|consen 1389 LARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPS--LYQ-QILEHEASGNW 1465 (2382)
T ss_pred HHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCcc--HHH-HHHHHHhhccH
Confidence 33444566777888877776311100 11223345555588888888887776653 32222 222 33345667999
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 046312 212 GEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRM 291 (514)
Q Consensus 212 ~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 291 (514)
..|..-|+.+.+.+ ++...+++-++......|.++.+.-..+......-+-....++.=+.+--+.++++.......
T Consensus 1466 ~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~l~-- 1542 (2382)
T KOG0890|consen 1466 ADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESYLS-- 1542 (2382)
T ss_pred HHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhhhh--
Confidence 99999999998764 333667887787777778777776655544433222122233333455567778877777666
Q ss_pred CcCCHHHHHHH--HHHHHHcC--ChHHHHHHHHHHHHCCCCC--------C-HHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 046312 292 EEINVWTWSAM--ILGLAQHG--YAEEALELFSNMKNSSISP--------N-YVTFLGVLCACNHAGMVEDGYRYFHEME 358 (514)
Q Consensus 292 ~~~~~~~~~~l--i~~~~~~~--~~~~a~~~~~~m~~~g~~p--------~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 358 (514)
+.+..+|... .....+.. +.-.-.+..+.+++.-+.| + ...|..++....- .++-....
T Consensus 1543 -~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l-------~el~~~~~ 1614 (2382)
T KOG0890|consen 1543 -DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLL-------LELENSIE 1614 (2382)
T ss_pred -cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHH-------HHHHHHHH
Confidence 3444445443 22222222 2111122333333211111 0 1122222221111 11111111
Q ss_pred HhhCCCCchH------HHHHHHHHHHhcCCHHHHHHHHHhC----CCCC-----CHHHHHHHHHHHHhcCCCCcchHHHH
Q 046312 359 HVHGIKPMRI------HYHTMADILARAGHLKEAYTFIMNM----PFQP-----NPIVLRALLSASSIHDAKYQDGVGNE 423 (514)
Q Consensus 359 ~~~~~~p~~~------~~~~li~~~~~~g~~~~A~~~~~~~----~~~p-----~~~~~~~l~~~~~~~~~~~~~~~a~~ 423 (514)
...+..++.. .|..-+..-....+..+-.--+++. ...| -..+|-...+.+...|. ++.|..
T Consensus 1615 ~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~---~q~A~n 1691 (2382)
T KOG0890|consen 1615 ELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGH---LQRAQN 1691 (2382)
T ss_pred HhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhccc---HHHHHH
Confidence 1123333322 2222222111111112211111111 1122 24678888888888999 999999
Q ss_pred HHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 046312 424 VRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNVGLK 468 (514)
Q Consensus 424 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 468 (514)
++-.+.+..+ +.++.-.+......|+...|+.++++..+.+.+
T Consensus 1692 all~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~ 1734 (2382)
T KOG0890|consen 1692 ALLNAKESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKNFP 1734 (2382)
T ss_pred HHHhhhhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhhcc
Confidence 9988888774 457899999999999999999999999876653
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.46 E-value=2.4 Score=38.71 Aligned_cols=155 Identities=11% Similarity=-0.016 Sum_probs=106.9
Q ss_pred HHhcCCHHHHHHHHHhcCc---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCcH
Q 046312 275 YAKCGAVGCARLLFSRMEE---INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNY----VTFLGVLCACNHAGMV 347 (514)
Q Consensus 275 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~~~~ 347 (514)
....|+..+|-..++++.+ .|...+...=.+|...|+.+.-...++++.-. ..||. ..-..+.-++...|-+
T Consensus 113 ~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 3456888888888888876 46778888888999999999999999988764 23443 2233444566788999
Q ss_pred HHHHHHHHHHHHhhCCCC-chHHHHHHHHHHHhcCCHHHHHHHHHhCCCCC---C---HHHHHHHHHHHHhcCCCCcchH
Q 046312 348 EDGYRYFHEMEHVHGIKP-MRIHYHTMADILARAGHLKEAYTFIMNMPFQP---N---PIVLRALLSASSIHDAKYQDGV 420 (514)
Q Consensus 348 ~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p---~---~~~~~~l~~~~~~~~~~~~~~~ 420 (514)
++|++.-++..+ +.+ |.-.-.++...+...|++.++.+++.+-...- + ...|-...-.+...+. ++.
T Consensus 192 ~dAEk~A~ralq---iN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~ae---ye~ 265 (491)
T KOG2610|consen 192 DDAEKQADRALQ---INRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAE---YEK 265 (491)
T ss_pred hhHHHHHHhhcc---CCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccc---hhH
Confidence 999988877764 333 34455667777788999999999998876111 1 1223233334455567 899
Q ss_pred HHHHHHHH--HhcCCCCC
Q 046312 421 GNEVRRRL--LELEPRGS 436 (514)
Q Consensus 421 a~~~~~~~--~~~~p~~~ 436 (514)
|.++++.- .+++.++.
T Consensus 266 aleIyD~ei~k~l~k~Da 283 (491)
T KOG2610|consen 266 ALEIYDREIWKRLEKDDA 283 (491)
T ss_pred HHHHHHHHHHHHhhccch
Confidence 99988753 44556555
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=93.44 E-value=2.5 Score=38.96 Aligned_cols=62 Identities=13% Similarity=0.232 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhccCc--HHHHHHHHHHHHHhhCCCCchHHHHHHHH
Q 046312 313 EEALELFSNMKNSSISPNYV--TFLGVLCACNHAGM--VEDGYRYFHEMEHVHGIKPMRIHYHTMAD 375 (514)
Q Consensus 313 ~~a~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 375 (514)
+.++.+|+.+.+.|+..+.. ....++..+..... ..++..+++.+.+. |+++....|..+.-
T Consensus 160 ~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~-~~kik~~~yp~lGl 225 (297)
T PF13170_consen 160 ERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKN-GVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHc-CCccccccccHHHH
Confidence 55677777777777665432 23333332222222 34677788888875 88887777765543
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=93.42 E-value=8.3 Score=37.61 Aligned_cols=145 Identities=12% Similarity=0.102 Sum_probs=75.8
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 046312 201 IITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGA 280 (514)
Q Consensus 201 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 280 (514)
+|.-..+..+.+.-++.-++..+. .||..+.-.++ +--...-+.++++++++..+.|-. . +.+...
T Consensus 174 IMq~AWRERnp~aRIkaA~eALei--~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAgE~----~-------lg~s~~ 239 (539)
T PF04184_consen 174 IMQKAWRERNPQARIKAAKEALEI--NPDCADAYILL-AEEEASTIVEAEELLRQAVKAGEA----S-------LGKSQF 239 (539)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHh--hhhhhHHHhhc-ccccccCHHHHHHHHHHHHHHHHH----h-------hchhhh
Confidence 344444556666666666665553 45543322222 222344577888888887766511 0 000000
Q ss_pred HHHHHHHHHhcCc----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHhccCcHHHHHHHHH
Q 046312 281 VGCARLLFSRMEE----INVWTWSAMILGLAQHGYAEEALELFSNMKNSSIS-PNYVTFLGVLCACNHAGMVEDGYRYFH 355 (514)
Q Consensus 281 ~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~ 355 (514)
.+..-..++.... +-..+-..+..+.-+.|+.++|.+.+++|.+.... -+......|+.++...+.+.++..++.
T Consensus 240 ~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~ 319 (539)
T PF04184_consen 240 LQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLA 319 (539)
T ss_pred hhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHH
Confidence 0000011111111 22233344566666778888888888888754211 123456667778888888888887777
Q ss_pred HHHH
Q 046312 356 EMEH 359 (514)
Q Consensus 356 ~~~~ 359 (514)
+..+
T Consensus 320 kYdD 323 (539)
T PF04184_consen 320 KYDD 323 (539)
T ss_pred Hhcc
Confidence 7643
|
The molecular function of this protein is uncertain. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=93.41 E-value=14 Score=40.12 Aligned_cols=108 Identities=16% Similarity=0.137 Sum_probs=48.3
Q ss_pred HhcCCHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 046312 276 AKCGAVGCARLLFSRMEEINVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFH 355 (514)
Q Consensus 276 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 355 (514)
-+.|.+.+|..++.--.+.-...|.+....+.....+++|.-.|+..-+ ....+.+|...|+|.+|..+..
T Consensus 919 ~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ 989 (1265)
T KOG1920|consen 919 KKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAA 989 (1265)
T ss_pred HhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHH
Confidence 3344444444443322222223333334444445555555555543321 1223455556666666666555
Q ss_pred HHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 046312 356 EMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP 394 (514)
Q Consensus 356 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 394 (514)
++.. +-.--..+-..|+..+...++.-+|-+++.+..
T Consensus 990 ql~~--~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 990 QLSE--GKDELVILAEELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred hhcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHh
Confidence 4432 111111122345555555666666655555543
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=93.36 E-value=3.4 Score=33.71 Aligned_cols=108 Identities=12% Similarity=0.083 Sum_probs=63.4
Q ss_pred HHhccCcHHHHHHHHHHHHHhhCCCCch---HHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCC
Q 046312 340 ACNHAGMVEDGYRYFHEMEHVHGIKPMR---IHYHTMADILARAGHLKEAYTFIMNMP-FQPNPIVLRALLSASSIHDAK 415 (514)
Q Consensus 340 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~ 415 (514)
.-...++.+.+..+++.+.. +.|.. .++.. ..+.+.|+|.+|..+|+++. ..|....-..|+..|....+
T Consensus 19 ~al~~~~~~D~e~lL~ALrv---LRP~~~e~~~~~~--~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~- 92 (160)
T PF09613_consen 19 VALRLGDPDDAEALLDALRV---LRPEFPELDLFDG--WLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALG- 92 (160)
T ss_pred HHHccCChHHHHHHHHHHHH---hCCCchHHHHHHH--HHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcC-
Confidence 33456788888888888764 35553 33333 33667888888888888886 44444445556655555555
Q ss_pred CcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHH
Q 046312 416 YQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSN 457 (514)
Q Consensus 416 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 457 (514)
-.......+.+.+.+++ +. -..|+..+........|..
T Consensus 93 --D~~Wr~~A~evle~~~d-~~-a~~Lv~~Ll~~~~~~~a~~ 130 (160)
T PF09613_consen 93 --DPSWRRYADEVLESGAD-PD-ARALVRALLARADLEPAHE 130 (160)
T ss_pred --ChHHHHHHHHHHhcCCC-hH-HHHHHHHHHHhccccchhh
Confidence 45555555556665554 22 2345555554444444444
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.19 E-value=5.3 Score=34.72 Aligned_cols=199 Identities=17% Similarity=0.089 Sum_probs=110.7
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHh-CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCc--CCH-HHHHHHHH-H
Q 046312 231 TTMLVVLSACTELGNLSLGKWVHLQLIER-GTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEE--INV-WTWSAMIL-G 305 (514)
Q Consensus 231 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~li~-~ 305 (514)
..+......+...+++..+...+...... ........+......+...+.+..+...+..... ++. ........ .
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGA 139 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHH
Confidence 44444445555555555555555554432 2223344444555555555566666666665553 111 22222222 5
Q ss_pred HHHcCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCC-chHHHHHHHHHHHhcCC
Q 046312 306 LAQHGYAEEALELFSNMKNSSI--SPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKP-MRIHYHTMADILARAGH 382 (514)
Q Consensus 306 ~~~~~~~~~a~~~~~~m~~~g~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~ 382 (514)
+...|+++.|...+.+...... ......+......+...++.+.+...+...... ... ....+..+...+...++
T Consensus 140 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 140 LYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKL--NPDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh--CcccchHHHHHhhHHHHHccc
Confidence 6777777888777777754211 012233333334455667777887777777753 222 35566667777777777
Q ss_pred HHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCC
Q 046312 383 LKEAYTFIMNMP-FQPN-PIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPR 434 (514)
Q Consensus 383 ~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~ 434 (514)
++.|...+.... ..|+ ...+..+...+...+. .+.+...+....+..|.
T Consensus 218 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 218 YEEALEYYEKALELDPDNAEALYNLALLLLELGR---YEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCC---HHHHHHHHHHHHHhCcc
Confidence 777777777765 3343 3344444444445555 67777777777777665
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=93.19 E-value=8 Score=36.79 Aligned_cols=66 Identities=17% Similarity=0.063 Sum_probs=43.0
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 046312 294 INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISP---NYVTFLGVLCACNHAGMVEDGYRYFHEMEH 359 (514)
Q Consensus 294 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 359 (514)
....+|..+...+.+.|+++.|...+..+...+... .......-+...-..|+..+|...++....
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345677778888888888888888888877643111 222333334445566777888887777776
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=92.92 E-value=7.4 Score=35.68 Aligned_cols=159 Identities=10% Similarity=-0.007 Sum_probs=70.4
Q ss_pred HHHHHHHHHhccCChHH---HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCc-C--CHHHHHHHHHH
Q 046312 232 TMLVVLSACTELGNLSL---GKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEE-I--NVWTWSAMILG 305 (514)
Q Consensus 232 t~~~ll~~~~~~g~~~~---a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~--~~~~~~~li~~ 305 (514)
++..++.++...+..+. |..+++.+..... -.+.++..-++.+.+.++.+.+.+.+.+|.. . ....+...+..
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~-~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~ 164 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYG-NKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHH 164 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCC-CCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHH
Confidence 34444555555444332 3334444433221 1233444445555555666666666666553 1 22333333333
Q ss_pred H---HHcCChHHHHHHHHHHHHCCCCCCHH-HHHHH----HHHHhcc------CcHHHHHHHHHHHHHhhCCCCchHHHH
Q 046312 306 L---AQHGYAEEALELFSNMKNSSISPNYV-TFLGV----LCACNHA------GMVEDGYRYFHEMEHVHGIKPMRIHYH 371 (514)
Q Consensus 306 ~---~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~l----l~~~~~~------~~~~~a~~~~~~~~~~~~~~p~~~~~~ 371 (514)
+ ... ....|...+..+....+.|... ....+ +...... ...+....+++.+.+..+.+.+..+-.
T Consensus 165 i~~l~~~-~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~ 243 (278)
T PF08631_consen 165 IKQLAEK-SPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAAS 243 (278)
T ss_pred HHHHHhh-CcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 3 222 2345555555555544444442 11111 1111121 124445555554444333333333322
Q ss_pred HH-------HHHHHhcCCHHHHHHHHHh
Q 046312 372 TM-------ADILARAGHLKEAYTFIMN 392 (514)
Q Consensus 372 ~l-------i~~~~~~g~~~~A~~~~~~ 392 (514)
++ +....+.+++++|.++|+-
T Consensus 244 a~~~LLW~~~~~~~~~k~y~~A~~w~~~ 271 (278)
T PF08631_consen 244 AIHTLLWNKGKKHYKAKNYDEAIEWYEL 271 (278)
T ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 22 2234567888888888763
|
It is also involved in sporulation []. |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.85 E-value=5.9 Score=34.39 Aligned_cols=216 Identities=19% Similarity=0.126 Sum_probs=156.6
Q ss_pred CChHHHHHHHHHHHHhCCC-CchhHHHHHHHHHHhcCCHHHHHHHHHhcCc-----CCHHHHHHHHHHHHHcCChHHHHH
Q 046312 244 GNLSLGKWVHLQLIERGTV-LNCQLGTALIDMYAKCGAVGCARLLFSRMEE-----INVWTWSAMILGLAQHGYAEEALE 317 (514)
Q Consensus 244 g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~ 317 (514)
+....+...+......... .....+......+...+.+..+...+..... .....+......+...+++..+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 3444444455554444322 1356777788888899999999888887642 445667777778888888999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHH-HHhccCcHHHHHHHHHHHHHhhCCCC----chHHHHHHHHHHHhcCCHHHHHHHHHh
Q 046312 318 LFSNMKNSSISPNYVTFLGVLC-ACNHAGMVEDGYRYFHEMEHVHGIKP----MRIHYHTMADILARAGHLKEAYTFIMN 392 (514)
Q Consensus 318 ~~~~m~~~g~~p~~~~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~ 392 (514)
.+.........+. ........ ++...|+++.+...+.+... ..| ....+......+...++.++|...+.+
T Consensus 117 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 192 (291)
T COG0457 117 LLEKALALDPDPD-LAEALLALGALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEK 192 (291)
T ss_pred HHHHHHcCCCCcc-hHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHH
Confidence 9999887543332 22222223 68899999999999999854 233 334444555557788999999999988
Q ss_pred CC-CCCC--HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 046312 393 MP-FQPN--PIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNVG 466 (514)
Q Consensus 393 ~~-~~p~--~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 466 (514)
.. ..++ ...+..+...+...++ .+.+...+.......|.....+..+...+...|..+++...+++.....
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (291)
T COG0457 193 ALKLNPDDDAEALLNLGLLYLKLGK---YEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELD 266 (291)
T ss_pred HHhhCcccchHHHHHhhHHHHHccc---HHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 86 3333 6778888888888888 8999999999999988755566777777777788999999998887644
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=92.84 E-value=7.1 Score=37.82 Aligned_cols=139 Identities=13% Similarity=0.075 Sum_probs=91.5
Q ss_pred CHHHHHHHHHhcC---cCC---HHHHHHHHHHHHHc---------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 046312 280 AVGCARLLFSRME---EIN---VWTWSAMILGLAQH---------GYAEEALELFSNMKNSSISPNYVTFLGVLCACNHA 344 (514)
Q Consensus 280 ~~~~A~~~~~~~~---~~~---~~~~~~li~~~~~~---------~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 344 (514)
..+.|..+|.+.. +.| ...|..+..++... ....+|.++-++..+.+ +-|......+..+....
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 4567888999887 433 44555554443321 23456777777777754 45677777777777888
Q ss_pred CcHHHHHHHHHHHHHhhCCCCc-hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH---HHHHHHHHHHHhcCCCCcch
Q 046312 345 GMVEDGYRYFHEMEHVHGIKPM-RIHYHTMADILARAGHLKEAYTFIMNM-PFQPNP---IVLRALLSASSIHDAKYQDG 419 (514)
Q Consensus 345 ~~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~---~~~~~l~~~~~~~~~~~~~~ 419 (514)
++++.|...|++... +.|| ...|........-.|+.++|.+.+++. ...|.. ......+..|+.++ ++
T Consensus 352 ~~~~~a~~~f~rA~~---L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~----~~ 424 (458)
T PRK11906 352 GQAKVSHILFEQAKI---HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP----LK 424 (458)
T ss_pred cchhhHHHHHHHHhh---cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc----hh
Confidence 889999999999974 4776 444555555566789999999999994 466643 33444444566554 34
Q ss_pred HHHHHHH
Q 046312 420 VGNEVRR 426 (514)
Q Consensus 420 ~a~~~~~ 426 (514)
.+.+.+-
T Consensus 425 ~~~~~~~ 431 (458)
T PRK11906 425 NNIKLYY 431 (458)
T ss_pred hhHHHHh
Confidence 4554443
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=92.80 E-value=3.6 Score=34.65 Aligned_cols=95 Identities=19% Similarity=0.161 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchH------H
Q 046312 298 TWSAMILGLAQHGYAEEALELFSNMKNSSISPNY--VTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRI------H 369 (514)
Q Consensus 298 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~------~ 369 (514)
.+..+...|++.|+.+.|.+.|.++.+....+.. ..+..+|+.....+++..+...+.++........|.. .
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 4556667777777777777777777765444442 3355666677777777777777766655311111111 2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCC
Q 046312 370 YHTMADILARAGHLKEAYTFIMNMP 394 (514)
Q Consensus 370 ~~~li~~~~~~g~~~~A~~~~~~~~ 394 (514)
|..|. +...+++.+|-+.|-+..
T Consensus 118 ~~gL~--~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 118 YEGLA--NLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHH--HHHhchHHHHHHHHHccC
Confidence 22222 345788999988887775
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=92.67 E-value=0.21 Score=29.11 Aligned_cols=26 Identities=19% Similarity=0.161 Sum_probs=22.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 046312 438 NLVIVANKYAEVGMWEKVSNVRRFMK 463 (514)
Q Consensus 438 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 463 (514)
++..|+.+|.+.|++++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46789999999999999999999954
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.66 E-value=6.5 Score=34.41 Aligned_cols=82 Identities=13% Similarity=-0.007 Sum_probs=37.1
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCcCC--HHHHHHHHHHHHHcC
Q 046312 233 MLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEEIN--VWTWSAMILGLAQHG 310 (514)
Q Consensus 233 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~li~~~~~~~ 310 (514)
|.....+|...+++++|...+....+. .+.|...| -....++.|.-+.+++.+-+ +..|+.-...|..+|
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslf-------hAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~G 105 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLF-------HAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECG 105 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHH-------HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC
Confidence 444445566666666666655544321 11111111 11122344444444444322 234445555666666
Q ss_pred ChHHHHHHHHHH
Q 046312 311 YAEEALELFSNM 322 (514)
Q Consensus 311 ~~~~a~~~~~~m 322 (514)
..+.|-..+++.
T Consensus 106 spdtAAmaleKA 117 (308)
T KOG1585|consen 106 SPDTAAMALEKA 117 (308)
T ss_pred CcchHHHHHHHH
Confidence 666555555443
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=92.62 E-value=14 Score=38.22 Aligned_cols=45 Identities=18% Similarity=0.323 Sum_probs=26.7
Q ss_pred hHHHHHHHHhcccCCCCChHHHHHHHcccCC--CCCcccHHHHHHHHHhC
Q 046312 60 AQILKELVRFCTLSSSKNLTYARSILCNYVN--DSVPIPWNNLIRGYAWS 107 (514)
Q Consensus 60 ~~~~~~ll~~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~ 107 (514)
..+| .+|-.|. |+|++++|.++..+... ......+-..+..+...
T Consensus 112 ~p~W-a~Iyy~L--R~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 112 DPIW-ALIYYCL--RCGDYDEALEVANENRNQFQKIERSFPTYLKAYASS 158 (613)
T ss_dssp EEHH-HHHHHHH--TTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTT
T ss_pred CccH-HHHHHHH--hcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhC
Confidence 3455 3555666 89999999999933221 23335566667776654
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=92.59 E-value=3.7 Score=37.82 Aligned_cols=62 Identities=18% Similarity=0.280 Sum_probs=40.1
Q ss_pred hHHHHHHHHHHHcCCCCCcchHHHHHHHHhc--c----CCchHHHHHHHHHHHhCC---CCCcchHHHHHH
Q 046312 111 REAVWVFIDMKRRGIKPTEFTYPFVLKACAE--I----SGLNEGMQVQANVTKSGL---DSDVYTNNNLVR 172 (514)
Q Consensus 111 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~--~----g~~~~a~~~~~~~~~~~~---~~~~~~~~~li~ 172 (514)
++.+++++.|++.|++-+..+|.+..-.... . -...+|..+++.|.+... .++...+..++.
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA 149 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLA 149 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHh
Confidence 4567788899999998888777664433333 1 234668888888887753 234455555543
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.34 E-value=0.72 Score=41.56 Aligned_cols=104 Identities=17% Similarity=0.260 Sum_probs=79.1
Q ss_pred HhCCCCChHHHHHHHHhcccCCCCChHHHHHHHcccCCCCCc-----ccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCC
Q 046312 53 VSGLQNDAQILKELVRFCTLSSSKNLTYARSILCNYVNDSVP-----IPWNNLIRGYAWSDRPREAVWVFIDMKRRGIKP 127 (514)
Q Consensus 53 ~~g~~~~~~~~~~ll~~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 127 (514)
..|...+..+-..++..-. ....++++...+-++.+.++. .+-..+++.+.+ -++++++.++..=.+.|+-|
T Consensus 57 ~~g~~~s~~~Vd~~V~v~~--~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlllk-y~pq~~i~~l~npIqYGiF~ 133 (418)
T KOG4570|consen 57 ERGLPVSSLTVDRLVDVIS--SREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLLK-YDPQKAIYTLVNPIQYGIFP 133 (418)
T ss_pred hcCCCcceeehhhhhhccc--cccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHHc-cChHHHHHHHhCcchhcccc
Confidence 4566667777777777777 788899999888887643332 222344555544 36789999988888899999
Q ss_pred CcchHHHHHHHHhccCCchHHHHHHHHHHHhC
Q 046312 128 TEFTYPFVLKACAEISGLNEGMQVQANVTKSG 159 (514)
Q Consensus 128 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 159 (514)
|..+++.+|+.+.+.++...|.++.-.|....
T Consensus 134 dqf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 134 DQFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred chhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 99999999999999999999988888877654
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.02 E-value=2.7 Score=34.57 Aligned_cols=116 Identities=14% Similarity=0.147 Sum_probs=51.0
Q ss_pred cCCHHHHHHHHHhcCcCCHHHHHHH-----HHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHH--HHHHhccCcHHH
Q 046312 278 CGAVGCARLLFSRMEEINVWTWSAM-----ILGLAQHGYAEEALELFSNMKNSSISPNYV-TFLGV--LCACNHAGMVED 349 (514)
Q Consensus 278 ~g~~~~A~~~~~~~~~~~~~~~~~l-----i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~l--l~~~~~~~~~~~ 349 (514)
.+..++|+.-|..+.+.+.-.|-.| .......|+...|...|.++-.....|-.. -...| ...+...|.++.
T Consensus 71 ~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~d 150 (221)
T COG4649 71 ENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDD 150 (221)
T ss_pred cCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHH
Confidence 3444445555544444332222222 223445566666666666655432222211 11111 112344555555
Q ss_pred HHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 046312 350 GYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP 394 (514)
Q Consensus 350 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 394 (514)
....++.+... +-+.....-..|.-+-.+.|++..|..+|..+.
T Consensus 151 V~srvepLa~d-~n~mR~sArEALglAa~kagd~a~A~~~F~qia 194 (221)
T COG4649 151 VSSRVEPLAGD-GNPMRHSAREALGLAAYKAGDFAKAKSWFVQIA 194 (221)
T ss_pred HHHHhhhccCC-CChhHHHHHHHHhHHHHhccchHHHHHHHHHHH
Confidence 55555444432 222223333445444556666666666666553
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=91.97 E-value=9.8 Score=34.87 Aligned_cols=59 Identities=8% Similarity=-0.002 Sum_probs=29.3
Q ss_pred hHHHHHHHHHcCCCHHH---HHHHhhcc---CCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHC
Q 046312 166 TNNNLVRFYGSCRRKRD---ACKVFDDM---CERSVVSWNVIITVCVENLWLGEAVGYFVKMKDL 224 (514)
Q Consensus 166 ~~~~li~~~~~~~~~~~---A~~~~~~~---~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 224 (514)
+...++.+|...+..+. |.++++.+ .......+-.-+..+.+.++.+++.+++.+|...
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 44555556655555432 33333333 1112334444445555566666666666666654
|
It is also involved in sporulation []. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=91.90 E-value=0.34 Score=29.75 Aligned_cols=31 Identities=13% Similarity=0.174 Sum_probs=27.8
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 046312 437 QNLVIVANKYAEVGMWEKVSNVRRFMKNVGL 467 (514)
Q Consensus 437 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 467 (514)
.++..++.+|.+.|++++|.+++++..+...
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P 32 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDP 32 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 4688999999999999999999999987653
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=91.90 E-value=10 Score=34.81 Aligned_cols=80 Identities=11% Similarity=0.002 Sum_probs=32.4
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCcCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 046312 264 NCQLGTALIDMYAKCGAVGCARLLFSRMEEINVWTWSAMILGLAQHG-YAEEALELFSNMKNSSISPNYVTFLGVLCACN 342 (514)
Q Consensus 264 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 342 (514)
+..+-...+.++.+.|+.+....+..-+.+++...-...+.++.+.+ +...+...+..+.. .++..+-...+.++.
T Consensus 141 ~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg 217 (280)
T PRK09687 141 STNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLA 217 (280)
T ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHH
Confidence 33444444445555444332222223333344433333333433332 12334444444442 234444444555555
Q ss_pred ccCc
Q 046312 343 HAGM 346 (514)
Q Consensus 343 ~~~~ 346 (514)
+.|+
T Consensus 218 ~~~~ 221 (280)
T PRK09687 218 LRKD 221 (280)
T ss_pred ccCC
Confidence 5554
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.86 E-value=8.3 Score=33.81 Aligned_cols=57 Identities=5% Similarity=0.119 Sum_probs=29.6
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHhhCC--CCchHHHHHHHHHHHhcCCHHHHHHHHH
Q 046312 334 FLGVLCACNHAGMVEDGYRYFHEMEHVHGI--KPMRIHYHTMADILARAGHLKEAYTFIM 391 (514)
Q Consensus 334 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~ 391 (514)
|...|-.+....++..|...++.-.+..++ .-+..+...|+.+| ..|+.+++.+++.
T Consensus 193 ~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 193 YVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVLS 251 (308)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHHc
Confidence 444444555556666666666653322111 12344555666655 3566666665553
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.73 E-value=15 Score=36.60 Aligned_cols=366 Identities=11% Similarity=0.030 Sum_probs=200.2
Q ss_pred HHHHHHhcccCCCCChHHHHHHHcccCC--CCCcccHHHHHHHHH-hCCCchHHHHHHHHHHHc-CCCC-CcchHHHHHH
Q 046312 63 LKELVRFCTLSSSKNLTYARSILCNYVN--DSVPIPWNNLIRGYA-WSDRPREAVWVFIDMKRR-GIKP-TEFTYPFVLK 137 (514)
Q Consensus 63 ~~~ll~~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~-~~g~~~~a~~~~~~m~~~-~~~p-~~~~~~~ll~ 137 (514)
|......=. +.|..+.+.++|++-.. +..+..|.....-+. ..|+++...+.|+..+.. |..- +...|...|.
T Consensus 82 W~kfA~~E~--klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie 159 (577)
T KOG1258|consen 82 WKKFADYEY--KLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIE 159 (577)
T ss_pred HHHHHHHHH--HhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHH
Confidence 344444444 78899999999998652 233445665554443 457888888888888763 3222 2235777777
Q ss_pred HHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHH---HcC------CCHHHHHHHhhccCCCChhhHHHHHHHHHhC
Q 046312 138 ACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFY---GSC------RRKRDACKVFDDMCERSVVSWNVIITVCVEN 208 (514)
Q Consensus 138 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~---~~~------~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 208 (514)
.-...+++.....+++.+.+.- ...++....-| ... ...+++.++-...... ..-...
T Consensus 160 ~en~qks~k~v~~iyeRileiP----~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~---------~~~~~~ 226 (577)
T KOG1258|consen 160 FENGQKSWKRVANIYERILEIP----LHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAER---------SKITHS 226 (577)
T ss_pred HHhccccHHHHHHHHHHHHhhh----hhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhh---------hhcccc
Confidence 7778888999999998887642 22233222222 111 1122222221111100 000001
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHH--HHHHHHHHh-------ccCChHHHHHHHHHHHHhC---C----CCchhHHHHHH
Q 046312 209 LWLGEAVGYFVKMKDLGFEPDETT--MLVVLSACT-------ELGNLSLGKWVHLQLIERG---T----VLNCQLGTALI 272 (514)
Q Consensus 209 ~~~~~a~~~~~~m~~~~~~p~~~t--~~~ll~~~~-------~~g~~~~a~~~~~~~~~~~---~----~~~~~~~~~li 272 (514)
+...+ .+=..+...+.+.+..+ .+.+-..+. ..-........++.-++.- + .++..+|...+
T Consensus 227 ~~~~e--~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yL 304 (577)
T KOG1258|consen 227 QEPLE--ELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYL 304 (577)
T ss_pred cChhH--HHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHh
Confidence 11111 11111112111111111 111111111 1111122222233322221 1 23456788888
Q ss_pred HHHHhcCCHHHHHHHHHhcCcCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHH
Q 046312 273 DMYAKCGAVGCARLLFSRMEEIN---VWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVED 349 (514)
Q Consensus 273 ~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 349 (514)
..-...|+.+.+.-+|+...-|- ...|-..+.-....|+.+-|..++....+--++-...+-..-...+...|+++.
T Consensus 305 df~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~ 384 (577)
T KOG1258|consen 305 DFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDD 384 (577)
T ss_pred hhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHH
Confidence 88889999999999999887542 345555555555568888888888777664333333322222223455789999
Q ss_pred HHHHHHHHHHhhCCCCchH-HHHHHHHHHHhcCCHHHHH---HHHHhCC-CCCCHHHHHHHH----H-HHHhcCCCCcch
Q 046312 350 GYRYFHEMEHVHGIKPMRI-HYHTMADILARAGHLKEAY---TFIMNMP-FQPNPIVLRALL----S-ASSIHDAKYQDG 419 (514)
Q Consensus 350 a~~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~---~~~~~~~-~~p~~~~~~~l~----~-~~~~~~~~~~~~ 419 (514)
|..+++.+... . |+.. .-..-+....+.|..+.+. +++.... ..-+..+...+. . .+...++ .+
T Consensus 385 A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d---~~ 458 (577)
T KOG1258|consen 385 AKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIRED---AD 458 (577)
T ss_pred HHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcC---HH
Confidence 99999999985 3 6633 2223345566788888887 5554443 112222222221 1 2344566 88
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHHhcCC
Q 046312 420 VGNEVRRRLLELEPRGSQNLVIVANKYAEVGM 451 (514)
Q Consensus 420 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 451 (514)
.|..++..+.+..|++...|..+++.....+.
T Consensus 459 ~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 459 LARIILLEANDILPDCKVLYLELIRFELIQPS 490 (577)
T ss_pred HHHHHHHHhhhcCCccHHHHHHHHHHHHhCCc
Confidence 89999999999999988888888888876664
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.61 E-value=0.98 Score=40.73 Aligned_cols=59 Identities=12% Similarity=0.121 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHh
Q 046312 369 HYHTMADILARAGHLKEAYTFIMNMP--FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLE 430 (514)
Q Consensus 369 ~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~ 430 (514)
++..++..+...|+.+.+.+.+++.. .+-+...|..++.+|...|+ ...|..+++.+.+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~---~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGR---QSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCC---chHHHHHHHHHHH
Confidence 34445555555555555555555543 22244555555555555555 5555555555444
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=91.21 E-value=15 Score=35.95 Aligned_cols=149 Identities=13% Similarity=0.022 Sum_probs=73.1
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCC
Q 046312 100 LIRGYAWSDRPREAVWVFIDMKRRGIKPTEFTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRR 179 (514)
Q Consensus 100 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 179 (514)
+|.-..+..+++.-++.-.+..+ +.||-.+.-.++ +--....+.++++++++..+.|- ..+..- ......|.
T Consensus 174 IMq~AWRERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAgE----~~lg~s-~~~~~~g~ 245 (539)
T PF04184_consen 174 IMQKAWRERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKAGE----ASLGKS-QFLQHHGH 245 (539)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHHHH----Hhhchh-hhhhcccc
Confidence 34444445566666666555555 345544322222 22234567888888888776651 000000 00001111
Q ss_pred HHHHHHHhhccCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 046312 180 KRDACKVFDDMCERSVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFE-PDETTMLVVLSACTELGNLSLGKWVHLQLIE 258 (514)
Q Consensus 180 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 258 (514)
.-+. +..+-.++-..+-..+..++.+.|+.++|++.+++|.+.... -.......|+.++...+.+.++..++...-+
T Consensus 246 ~~e~--~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 246 FWEA--WHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred hhhh--hhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 1111 111111111223334556666778888888888877654211 1223445667777777777777777666543
|
The molecular function of this protein is uncertain. |
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=91.16 E-value=4.6 Score=29.74 Aligned_cols=88 Identities=9% Similarity=0.059 Sum_probs=61.2
Q ss_pred CchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCHHHHHHHhhccCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHH
Q 046312 144 GLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKRDACKVFDDMCERSVVSWNVIITVCVENLWLGEAVGYFVKMKD 223 (514)
Q Consensus 144 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 223 (514)
.-++|..+-+.+...+-. ...+--.-+..+...|++++|..+.+.++-||...|-+|.. .+.|..++...-+.+|..
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~ 96 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAA 96 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 346666666666554311 22222233456788999999999999999999999988865 477888888888888887
Q ss_pred CCCCCCHHHHHH
Q 046312 224 LGFEPDETTMLV 235 (514)
Q Consensus 224 ~~~~p~~~t~~~ 235 (514)
.| .|...+|..
T Consensus 97 sg-~p~lq~Faa 107 (115)
T TIGR02508 97 SG-DPRLQTFVA 107 (115)
T ss_pred CC-CHHHHHHHH
Confidence 76 566555543
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.11 E-value=2 Score=33.43 Aligned_cols=87 Identities=13% Similarity=-0.001 Sum_probs=46.1
Q ss_pred HhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCC----HHHHHHHHHHHHhcCC
Q 046312 341 CNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP--FQPN----PIVLRALLSASSIHDA 414 (514)
Q Consensus 341 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~----~~~~~~l~~~~~~~~~ 414 (514)
.+..|+.+.|++.|.+... -.+-....||.-..++.-.|+.++|++-+++.. ..|. ...|..-...|...|+
T Consensus 53 laE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 4455666666666666553 223345556666666666666666666555543 1111 1222222233556666
Q ss_pred CCcchHHHHHHHHHHhcC
Q 046312 415 KYQDGVGNEVRRRLLELE 432 (514)
Q Consensus 415 ~~~~~~a~~~~~~~~~~~ 432 (514)
.+.|+.-++.+.+++
T Consensus 131 ---dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 ---DDAARADFEAAAQLG 145 (175)
T ss_pred ---hHHHHHhHHHHHHhC
Confidence 666666666666655
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=90.88 E-value=15 Score=34.91 Aligned_cols=66 Identities=12% Similarity=-0.005 Sum_probs=53.0
Q ss_pred CCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCC----CCCchHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 046312 397 PNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEP----RGSQNLVIVANKYAEVGMWEKVSNVRRFMKNV 465 (514)
Q Consensus 397 p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 465 (514)
....+|..+...+.+.|. ++.|..++..+...++ ..+.....-+......|+..+|...++.....
T Consensus 144 ~~~~~~l~~a~~aRk~g~---~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGN---FQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred HHHHHHHHHHHHHHHCCC---cHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 345678888888999999 9999999888887652 13556777889999999999999999888773
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=90.87 E-value=0.37 Score=38.99 Aligned_cols=85 Identities=9% Similarity=0.171 Sum_probs=45.2
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCC
Q 046312 99 NLIRGYAWSDRPREAVWVFIDMKRRGIKPTEFTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCR 178 (514)
Q Consensus 99 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 178 (514)
.+|..+.+.+.+.....+++.+...+..-+....+.++..|++.++.+...++++ ..+..-...++..|.+.|
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~-------~~~~yd~~~~~~~c~~~~ 84 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK-------TSNNYDLDKALRLCEKHG 84 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT-------SSSSS-CTHHHHHHHTTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc-------cccccCHHHHHHHHHhcc
Confidence 3455555666666666666666655444445556666666666666666666554 111122234455555555
Q ss_pred CHHHHHHHhhcc
Q 046312 179 RKRDACKVFDDM 190 (514)
Q Consensus 179 ~~~~A~~~~~~~ 190 (514)
.+++|.-++.++
T Consensus 85 l~~~a~~Ly~~~ 96 (143)
T PF00637_consen 85 LYEEAVYLYSKL 96 (143)
T ss_dssp SHHHHHHHHHCC
T ss_pred hHHHHHHHHHHc
Confidence 555555554444
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.55 E-value=11 Score=32.84 Aligned_cols=37 Identities=3% Similarity=-0.003 Sum_probs=21.6
Q ss_pred chHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHH
Q 046312 418 DGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEK 454 (514)
Q Consensus 418 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 454 (514)
+.+|..+++.+....-+++-.-.++-..+.+.|...-
T Consensus 170 Y~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl 206 (288)
T KOG1586|consen 170 YSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHL 206 (288)
T ss_pred HHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhH
Confidence 7778888888777665554333344444445554433
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=90.51 E-value=3.9 Score=34.47 Aligned_cols=94 Identities=15% Similarity=0.015 Sum_probs=56.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCcC------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHC---CCCCCHHHHHH
Q 046312 266 QLGTALIDMYAKCGAVGCARLLFSRMEEI------NVWTWSAMILGLAQHGYAEEALELFSNMKNS---SISPNYVTFLG 336 (514)
Q Consensus 266 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---g~~p~~~~~~~ 336 (514)
..+..+.+.|++.|+.+.|.+.|.++.+. -...+-.+|......+++..+.....+.... |-.++...-..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 34556677777777777777777776652 2345666777777788888887777776542 21222211111
Q ss_pred HHH--HHhccCcHHHHHHHHHHHHH
Q 046312 337 VLC--ACNHAGMVEDGYRYFHEMEH 359 (514)
Q Consensus 337 ll~--~~~~~~~~~~a~~~~~~~~~ 359 (514)
... ++...+++..|-+.|-+...
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccCc
Confidence 111 23446788887777766654
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.38 E-value=14 Score=33.59 Aligned_cols=118 Identities=14% Similarity=0.082 Sum_probs=64.6
Q ss_pred HHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCcC-CHHHH---HHHHHHHHHcCChHH
Q 046312 239 ACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEEI-NVWTW---SAMILGLAQHGYAEE 314 (514)
Q Consensus 239 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~---~~li~~~~~~~~~~~ 314 (514)
.....|++.+|..+++........ +...-..+..+|...|+.+.|..++..+... ....+ ..-|..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 345667777777777777766533 3455566777888888888888888777631 11111 112233333333333
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHh
Q 046312 315 ALELFSNMKNSSISP-NYVTFLGVLCACNHAGMVEDGYRYFHEMEHV 360 (514)
Q Consensus 315 a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 360 (514)
...+-++.-. .| |...-..+...+...|+.+.|.+.+-.+.++
T Consensus 222 ~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 222 IQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred HHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3333333322 33 3444445555666667777766655555543
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.37 E-value=3.7 Score=37.12 Aligned_cols=75 Identities=15% Similarity=0.193 Sum_probs=34.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHH----hhCCCCchHHHHHHH
Q 046312 299 WSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEH----VHGIKPMRIHYHTMA 374 (514)
Q Consensus 299 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~p~~~~~~~li 374 (514)
+..++..+...|+.+.+...++++.... +-+...|..++.+|...|+...|+..|+.+.+ ..|+.|...+...+.
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~ 234 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYE 234 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHH
Confidence 3344444444455555555555544432 23344445555555555555555544444433 124555544444333
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=89.93 E-value=0.86 Score=26.46 Aligned_cols=24 Identities=21% Similarity=0.214 Sum_probs=13.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHH
Q 046312 299 WSAMILGLAQHGYAEEALELFSNM 322 (514)
Q Consensus 299 ~~~li~~~~~~~~~~~a~~~~~~m 322 (514)
|..|...|.+.|++++|+++|++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 445555566666666666666553
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=89.64 E-value=3.9 Score=30.28 Aligned_cols=61 Identities=15% Similarity=0.154 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHH
Q 046312 314 EALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADI 376 (514)
Q Consensus 314 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 376 (514)
+..+-+..+....+.|++....+.+.+|-+.+++..|.++++.++.+.| +....|..+++-
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lqE 88 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQE 88 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHHH
Confidence 4556666677778899999999999999999999999999999998644 333377777653
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.58 E-value=1.1 Score=37.62 Aligned_cols=98 Identities=15% Similarity=0.096 Sum_probs=51.5
Q ss_pred HhccCcHHHHHHHHHHHHHhhCCCCc---hHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCCC
Q 046312 341 CNHAGMVEDGYRYFHEMEHVHGIKPM---RIHYHTMADILARAGHLKEAYTFIMNMP-FQPN-PIVLRALLSASSIHDAK 415 (514)
Q Consensus 341 ~~~~~~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~~~ 415 (514)
+...|++++|..-|......+.-.+. ...|..-..++.+.+.++.|++-..+.. +.|. ......-..+|.+...
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek- 183 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEK- 183 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhh-
Confidence 45667777777777777653211111 2234444455666677777666655543 3332 1222222234555544
Q ss_pred CcchHHHHHHHHHHhcCCCCCchHHH
Q 046312 416 YQDGVGNEVRRRLLELEPRGSQNLVI 441 (514)
Q Consensus 416 ~~~~~a~~~~~~~~~~~p~~~~~~~~ 441 (514)
++.|.+-++.+.+.+|....+...
T Consensus 184 --~eealeDyKki~E~dPs~~ear~~ 207 (271)
T KOG4234|consen 184 --YEEALEDYKKILESDPSRREAREA 207 (271)
T ss_pred --HHHHHHHHHHHHHhCcchHHHHHH
Confidence 666777777777776664433333
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=89.54 E-value=3 Score=30.47 Aligned_cols=63 Identities=14% Similarity=0.143 Sum_probs=49.1
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHH
Q 046312 311 YAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMAD 375 (514)
Q Consensus 311 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 375 (514)
+.-++.+-++.+....+.|++....+.+++|-+.+++..|.++++.++.+.| .+...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHHH
Confidence 3445666677777778899999999999999999999999999999886533 34556766654
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=88.90 E-value=1.3 Score=24.99 Aligned_cols=27 Identities=11% Similarity=0.154 Sum_probs=14.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 046312 438 NLVIVANKYAEVGMWEKVSNVRRFMKN 464 (514)
Q Consensus 438 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 464 (514)
.+..++.+|...|++++|++.+++...
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344555555555666666555555543
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=88.85 E-value=19 Score=33.05 Aligned_cols=138 Identities=8% Similarity=-0.035 Sum_probs=70.9
Q ss_pred CChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC-ChHHHHHHHHHHHHhCCCCchhHHHHH
Q 046312 193 RSVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELG-NLSLGKWVHLQLIERGTVLNCQLGTAL 271 (514)
Q Consensus 193 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l 271 (514)
++..+-...+.++.+.++ ..+...+-.+.+ .+|...-...+.++.+.+ +-..+...+..+.. .++..+-...
T Consensus 140 ~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A 212 (280)
T PRK09687 140 KSTNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEA 212 (280)
T ss_pred CCHHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHH
Confidence 344444455555555554 344444444443 233334444444444432 12334444333332 3455566666
Q ss_pred HHHHHhcCCHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 046312 272 IDMYAKCGAVGCARLLFSRMEEINVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACN 342 (514)
Q Consensus 272 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 342 (514)
+.++.+.|+......+.+.+..++ .....+.++...|.. +|...+..+.+. .||...-...+.+|.
T Consensus 213 ~~aLg~~~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 213 IIGLALRKDKRVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred HHHHHccCChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 666666666433333333333333 234566777777774 677777777753 346666666666654
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=88.81 E-value=0.27 Score=39.84 Aligned_cols=85 Identities=14% Similarity=0.151 Sum_probs=64.2
Q ss_pred HHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCHHHHHHHhhccCCCChhhHHHHHHHHHhCCChhH
Q 046312 134 FVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKRDACKVFDDMCERSVVSWNVIITVCVENLWLGE 213 (514)
Q Consensus 134 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 213 (514)
.++..+.+.+.+.....+++.+...+...+....+.++..|++.++.++..++++.... .-...++..|.+.|.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 46778888899999999999999877566788899999999999988999888884432 333556667777777777
Q ss_pred HHHHHHHH
Q 046312 214 AVGYFVKM 221 (514)
Q Consensus 214 a~~~~~~m 221 (514)
+.-++.++
T Consensus 89 a~~Ly~~~ 96 (143)
T PF00637_consen 89 AVYLYSKL 96 (143)
T ss_dssp HHHHHHCC
T ss_pred HHHHHHHc
Confidence 77766654
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=88.64 E-value=0.98 Score=25.63 Aligned_cols=25 Identities=16% Similarity=0.199 Sum_probs=12.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 046312 439 LVIVANKYAEVGMWEKVSNVRRFMK 463 (514)
Q Consensus 439 ~~~l~~~~~~~g~~~~A~~~~~~m~ 463 (514)
|..++.+|...|++++|...+++..
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al 28 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRAL 28 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHH
Confidence 4445555555555555555555544
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=88.56 E-value=34 Score=35.67 Aligned_cols=222 Identities=5% Similarity=-0.151 Sum_probs=106.9
Q ss_pred CChHHHHHHHHHHHHhC-CCCc--hhHHHHHHHHHHhcCCHHHHHHHHHhcCc--CCHHHHHHHHHHHHHcCChHHHHHH
Q 046312 244 GNLSLGKWVHLQLIERG-TVLN--CQLGTALIDMYAKCGAVGCARLLFSRMEE--INVWTWSAMILGLAQHGYAEEALEL 318 (514)
Q Consensus 244 g~~~~a~~~~~~~~~~~-~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~ 318 (514)
.+.+.|...+....... ..+. ..+...+.......+...++...++.... .+......-+..-.+.++++.+...
T Consensus 255 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~~~~~~e~r~r~Al~~~dw~~~~~~ 334 (644)
T PRK11619 255 QDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQSTSLLERRVRMALGTGDRRGLNTW 334 (644)
T ss_pred hCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccCCcHHHHHHHHHHHHccCHHHHHHH
Confidence 34566666666553332 2211 11222332222222224455555555432 1333333333344466666666666
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhh-----------CCC--------Cch-H-----HHHHH
Q 046312 319 FSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVH-----------GIK--------PMR-I-----HYHTM 373 (514)
Q Consensus 319 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----------~~~--------p~~-~-----~~~~l 373 (514)
+..|-... .-...-.-.+.+++...|+.++|..+|+.+.... |.+ |.. . --..-
T Consensus 335 i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~~~fYG~LAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~r 413 (644)
T PRK11619 335 LARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQRGFYPMVAAQRLGEEYPLKIDKAPKPDSALTQGPEMAR 413 (644)
T ss_pred HHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCcHHHHHHHHcCCCCCCCCCCCCchhhhhccChHHHH
Confidence 66654321 2222333345555555666666666666653210 111 000 0 00112
Q ss_pred HHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcC---CCCCchHHHHHHHHHhcC
Q 046312 374 ADILARAGHLKEAYTFIMNMPFQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELE---PRGSQNLVIVANKYAEVG 450 (514)
Q Consensus 374 i~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g 450 (514)
+..+...|...+|...+..+....+......+.......|. .+.+..+.......+ -.-+..|...+..+.+.-
T Consensus 414 a~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~---~~~ai~~~~~~~~~~~~~~rfp~~~~~~~~~~a~~~ 490 (644)
T PRK11619 414 VRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQW---WDLSVQATIAGKLWDHLEERFPLAWNDEFRRYTSGK 490 (644)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---HHHHHHHHhhchhHHHHHHhCCcchHHHHHHHHHHc
Confidence 34456678888888777766533455555666666667777 666665554432211 112334666666666665
Q ss_pred CHHHHHHHHHHHHhCCCCC
Q 046312 451 MWEKVSNVRRFMKNVGLKK 469 (514)
Q Consensus 451 ~~~~A~~~~~~m~~~~~~~ 469 (514)
..+.+.-.---.++.+..|
T Consensus 491 ~v~~~lv~ai~rqES~f~p 509 (644)
T PRK11619 491 GIPQSYAMAIARQESAWNP 509 (644)
T ss_pred CCCHHHHHHHHHHhcCCCC
Confidence 6666554333334555543
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.50 E-value=6.9 Score=35.61 Aligned_cols=102 Identities=17% Similarity=0.126 Sum_probs=73.0
Q ss_pred hCCCCCcchHHHHHHHHHcCCCHHHHHHHhhccCC-CC-----hhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHH
Q 046312 158 SGLDSDVYTNNNLVRFYGSCRRKRDACKVFDDMCE-RS-----VVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDET 231 (514)
Q Consensus 158 ~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~-~~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 231 (514)
.|.+....+...++..-....+++.++..+-++.+ ++ ..+-.++++.+.+ -++++++.++..=++-|+-||.+
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlllk-y~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHHc-cChHHHHHHHhCcchhccccchh
Confidence 44455566666666666667778888877766622 11 1112233333333 46779999988888999999999
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHhC
Q 046312 232 TMLVVLSACTELGNLSLGKWVHLQLIERG 260 (514)
Q Consensus 232 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 260 (514)
+++.+|+.+.+.+++..|.++.-.|+...
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 99999999999999999999888887765
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=88.19 E-value=3.7 Score=32.92 Aligned_cols=49 Identities=10% Similarity=0.024 Sum_probs=28.5
Q ss_pred chHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 046312 418 DGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNVG 466 (514)
Q Consensus 418 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 466 (514)
.++++.+++.+.-+.|+.+..-..-++.+...|+|++|..+++++.+.+
T Consensus 26 ~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 26 PYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 5555555555555566555555555555566666666666666555443
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=88.19 E-value=2.5 Score=34.41 Aligned_cols=70 Identities=16% Similarity=0.084 Sum_probs=33.8
Q ss_pred HhcCCHHHHHHHHHhCC-CCCCHHHHHHH-HHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC
Q 046312 378 ARAGHLKEAYTFIMNMP-FQPNPIVLRAL-LSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVG 450 (514)
Q Consensus 378 ~~~g~~~~A~~~~~~~~-~~p~~~~~~~l-~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 450 (514)
.+.++.+++..++..+. ..|.......+ ...+...|+ +++|.++++.+.+-.|..+..-..++.++...|
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~---w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~ 92 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGD---WDDALRLLRELEERAPGFPYAKALLALCLYALG 92 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCC---HHHHHHHHHHHhccCCCChHHHHHHHHHHHHcC
Confidence 34556666666666664 44433222211 122455566 666666666665555554433233333333333
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=87.95 E-value=14 Score=30.57 Aligned_cols=134 Identities=9% Similarity=0.074 Sum_probs=79.5
Q ss_pred cccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcc-hHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcc-hHHHH-
Q 046312 94 PIPWNNLIRGYAWSDRPREAVWVFIDMKRRGIKPTEF-TYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVY-TNNNL- 170 (514)
Q Consensus 94 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l- 170 (514)
...|..-+. +++.|+.++|+.-|..+.+.|..--+. ............|+...|...|+++-.....|-.. -...|
T Consensus 59 gd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlr 137 (221)
T COG4649 59 GDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLR 137 (221)
T ss_pred hHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHH
Confidence 344554444 356778899999999888876432111 11122234567788888888888876553333222 11111
Q ss_pred -HHHHHcCCCHHHHHHHhhccCCC-C---hhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC
Q 046312 171 -VRFYGSCRRKRDACKVFDDMCER-S---VVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEP 228 (514)
Q Consensus 171 -i~~~~~~~~~~~A~~~~~~~~~~-~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 228 (514)
.-.+...|.++......+.+..+ + ...-.+|.-+-.+.|++.+|.+.|..+......|
T Consensus 138 aa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 138 AAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 12356678888777777666221 1 2234456666677888888888888776643333
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=87.84 E-value=0.82 Score=24.25 Aligned_cols=23 Identities=13% Similarity=0.108 Sum_probs=20.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHH
Q 046312 438 NLVIVANKYAEVGMWEKVSNVRR 460 (514)
Q Consensus 438 ~~~~l~~~~~~~g~~~~A~~~~~ 460 (514)
+...++.++...|+.++|..+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 56688999999999999998876
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=87.83 E-value=29 Score=34.09 Aligned_cols=50 Identities=8% Similarity=0.007 Sum_probs=31.9
Q ss_pred CcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 046312 345 GMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP 394 (514)
Q Consensus 345 ~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 394 (514)
.+.+....+..++....|...-...+.-+-.-|....++++|++++..+.
T Consensus 183 dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il 232 (711)
T COG1747 183 DDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHIL 232 (711)
T ss_pred ccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHh
Confidence 45555666666666655555555666666666667777777777777654
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=87.49 E-value=15 Score=30.42 Aligned_cols=136 Identities=10% Similarity=-0.001 Sum_probs=76.0
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcC--CHHHHHHHHHhC
Q 046312 316 LELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAG--HLKEAYTFIMNM 393 (514)
Q Consensus 316 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g--~~~~A~~~~~~~ 393 (514)
.++++.+.+.+++|+...+..++..+.+.|.+.....++ . +++-+|.......+-.+.... -..-|++++.++
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qll----q-~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL 88 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLL----Q-YHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRL 88 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH----h-hcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHh
Confidence 445556666778888888888888888888766544443 3 255555444333322222111 123445555555
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 046312 394 PFQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNVGL 467 (514)
Q Consensus 394 ~~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 467 (514)
.. .+..++..+...|+ ..++++.+.+....+...-..+.++..+.++...-..+++-..+++.
T Consensus 89 ~~-----~~~~iievLL~~g~------vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~n~ 151 (167)
T PF07035_consen 89 GT-----AYEEIIEVLLSKGQ------VLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVFRFFEERNL 151 (167)
T ss_pred hh-----hHHHHHHHHHhCCC------HHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHHHHHHHhhH
Confidence 41 23445566677777 44444444443322222345677777777777777777777766554
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.46 E-value=40 Score=35.30 Aligned_cols=118 Identities=13% Similarity=0.043 Sum_probs=65.0
Q ss_pred HHHHHHHHHcCCCHHHHHHHhhccCCCChhhH----HHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 046312 167 NNNLVRFYGSCRRKRDACKVFDDMCERSVVSW----NVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTE 242 (514)
Q Consensus 167 ~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~ 242 (514)
...-++.+.+...++-|..+.+.-. .|.... ....+-+.+.|++++|...|-+-+.. +.|. .++.-|..
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~~-~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLd 409 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQH-LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLD 409 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcC
Confidence 4455666666667777776665542 222222 22233455667777777666554432 2222 23444455
Q ss_pred cCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 046312 243 LGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRME 292 (514)
Q Consensus 243 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 292 (514)
...+..-..+++.+.+.|+. +...-+.|+.+|.+.++.++-.++.+...
T Consensus 410 aq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~ 458 (933)
T KOG2114|consen 410 AQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD 458 (933)
T ss_pred HHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC
Confidence 55556666666666666654 44445566666666666666665555544
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.33 E-value=39 Score=35.04 Aligned_cols=69 Identities=13% Similarity=0.080 Sum_probs=35.0
Q ss_pred CCCChHHHHHHHcccCC-CC---CcccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCCch
Q 046312 74 SSKNLTYARSILCNYVN-DS---VPIPWNNLIRGYAWSDRPREAVWVFIDMKRRGIKPTEFTYPFVLKACAEISGLN 146 (514)
Q Consensus 74 ~~g~~~~A~~~~~~~~~-~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~ 146 (514)
+.+.+++|..+.+.... .+ -...+...|..+.-.|++++|-...-.|... +..-|......+...++..
T Consensus 368 ~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~~l~ 440 (846)
T KOG2066|consen 368 EKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELDQLT 440 (846)
T ss_pred HhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccccccc
Confidence 55666666666655442 11 1123555666666666666666655555432 3333444444444444443
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=87.27 E-value=40 Score=35.03 Aligned_cols=61 Identities=18% Similarity=0.063 Sum_probs=40.3
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCCc-------hHHHHHHHHHHHh
Q 046312 97 WNNLIRGYAWSDRPREAVWVFIDMKRRGIKPTEFTYPFVLKACAEISGL-------NEGMQVQANVTKS 158 (514)
Q Consensus 97 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~-------~~a~~~~~~~~~~ 158 (514)
-=.+|-.|.|+|++++|.++..+.... .......+...+..+....+- ++...-+++....
T Consensus 114 ~Wa~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~ 181 (613)
T PF04097_consen 114 IWALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRN 181 (613)
T ss_dssp HHHHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT
T ss_pred cHHHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 336678889999999999999666544 556667788888888775332 3444555555444
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.98 E-value=13 Score=37.17 Aligned_cols=100 Identities=15% Similarity=0.063 Sum_probs=47.6
Q ss_pred hcCCHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 046312 277 KCGAVGCARLLFSRMEEINVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHE 356 (514)
Q Consensus 277 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 356 (514)
+.|+++.|.++..+. .+..-|..|..+....+++..|.+.|.+... |..|+-.+...|+.+....+-..
T Consensus 649 ~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~ 717 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASL 717 (794)
T ss_pred hcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHH
Confidence 344444444443322 2344566666666666666666666655443 33344444455554444333333
Q ss_pred HHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 046312 357 MEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP 394 (514)
Q Consensus 357 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 394 (514)
..+. |. -|. -..+|...|+++++.+++.+-.
T Consensus 718 ~~~~-g~-~N~-----AF~~~~l~g~~~~C~~lLi~t~ 748 (794)
T KOG0276|consen 718 AKKQ-GK-NNL-----AFLAYFLSGDYEECLELLISTQ 748 (794)
T ss_pred HHhh-cc-cch-----HHHHHHHcCCHHHHHHHHHhcC
Confidence 3332 21 111 1123445566666666665543
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=86.79 E-value=1.1 Score=25.31 Aligned_cols=27 Identities=15% Similarity=-0.188 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHhcCCCCcchHHHHHHHHHH
Q 046312 400 IVLRALLSASSIHDAKYQDGVGNEVRRRLL 429 (514)
Q Consensus 400 ~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~ 429 (514)
..+..+...+...|+ +++|.+.++++.
T Consensus 2 ~~~~~lg~~~~~~~~---~~~A~~~~~~al 28 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGN---YEEAIEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHHHHTT----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC---HHHHHHHHHHHH
Confidence 456778889999999 999999998875
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=86.57 E-value=0.84 Score=26.15 Aligned_cols=22 Identities=23% Similarity=0.240 Sum_probs=13.0
Q ss_pred CcchHHHHHHHHHcCCCHHHHH
Q 046312 163 DVYTNNNLVRFYGSCRRKRDAC 184 (514)
Q Consensus 163 ~~~~~~~li~~~~~~~~~~~A~ 184 (514)
+..+|+.+...|...|++++|+
T Consensus 12 n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhhc
Confidence 4555666666666666666553
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=86.24 E-value=1.4 Score=40.24 Aligned_cols=113 Identities=10% Similarity=0.013 Sum_probs=72.8
Q ss_pred HHHHhccCcHHHHHHHHHHHHHhhCCCC-chHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCC
Q 046312 338 LCACNHAGMVEDGYRYFHEMEHVHGIKP-MRIHYHTMADILARAGHLKEAYTFIMNMP--FQPNPIVLRALLSASSIHDA 414 (514)
Q Consensus 338 l~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~ 414 (514)
..-|.++|.+++|+..|..... +.| |.+++..-..+|.+..++..|..-...+. ...-...|..-..+=...|.
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia---~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA---VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc---cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 3457788999999999888774 356 78888888888999988887776665554 11112233333333344455
Q ss_pred CCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHH
Q 046312 415 KYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRR 460 (514)
Q Consensus 415 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 460 (514)
..+|.+-.+.+.++.|++.. |-..|.+.....++.-+.+
T Consensus 181 ---~~EAKkD~E~vL~LEP~~~E----LkK~~a~i~Sl~E~~I~~K 219 (536)
T KOG4648|consen 181 ---NMEAKKDCETVLALEPKNIE----LKKSLARINSLRERKIATK 219 (536)
T ss_pred ---HHHHHHhHHHHHhhCcccHH----HHHHHHHhcchHhhhHHhh
Confidence 77788888888888888543 4444444455555444433
|
|
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=86.13 E-value=26 Score=31.79 Aligned_cols=109 Identities=13% Similarity=0.070 Sum_probs=58.4
Q ss_pred chHHHHHHHHHHH-cCCCCCcchHHHHHHHHhc-cC-CchHHHHHHHHHHHh-CCCCCcchHHHHHHHHHcCCCHHHHHH
Q 046312 110 PREAVWVFIDMKR-RGIKPTEFTYPFVLKACAE-IS-GLNEGMQVQANVTKS-GLDSDVYTNNNLVRFYGSCRRKRDACK 185 (514)
Q Consensus 110 ~~~a~~~~~~m~~-~~~~p~~~~~~~ll~~~~~-~g-~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~A~~ 185 (514)
..+|+.+|+..-. ..+--|......+++.... .+ ....--++.+-+... |-.++..+...++..+++.+++.+-.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 3455555552211 1234455555555555444 11 122222233333321 235566666677777777777777777
Q ss_pred Hhhcc-----CCCChhhHHHHHHHHHhCCChhHHHHHH
Q 046312 186 VFDDM-----CERSVVSWNVIITVCVENLWLGEAVGYF 218 (514)
Q Consensus 186 ~~~~~-----~~~~~~~~~~li~~~~~~~~~~~a~~~~ 218 (514)
+++.. +..|...|..+|......|+..-..++.
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI 261 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKII 261 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHh
Confidence 77666 2246677777777777777765544443
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=85.97 E-value=1 Score=25.15 Aligned_cols=29 Identities=14% Similarity=0.126 Sum_probs=25.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 046312 438 NLVIVANKYAEVGMWEKVSNVRRFMKNVG 466 (514)
Q Consensus 438 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 466 (514)
++..++.+|.+.|++++|.++|+++.+.-
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 46688999999999999999999987643
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.93 E-value=47 Score=34.53 Aligned_cols=153 Identities=11% Similarity=0.057 Sum_probs=82.5
Q ss_pred HHHHhccCCchHHHHHHHHHHHhCCCC---CcchHHHHHHHHHcCCCHHHHHHHhhccCCCChhhHHHHHHHHHhCCChh
Q 046312 136 LKACAEISGLNEGMQVQANVTKSGLDS---DVYTNNNLVRFYGSCRRKRDACKVFDDMCERSVVSWNVIITVCVENLWLG 212 (514)
Q Consensus 136 l~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 212 (514)
++.+.+.+.+++|+...+... |..| -.......|+.+.-.|++++|-...-.|...+..-|.-.+..+...++..
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~--~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~ 440 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASI--GNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLT 440 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhcc--CCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccc
Confidence 334455566666665544332 2233 23456667777777777777777777776666666666666666665554
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHH--------------HHH----HHHHhCCCCchhHHHHHHHH
Q 046312 213 EAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKW--------------VHL----QLIERGTVLNCQLGTALIDM 274 (514)
Q Consensus 213 ~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~--------------~~~----~~~~~~~~~~~~~~~~li~~ 274 (514)
....++ -......+...|..++..+.. .+...-.+ +.+ +..+. .-+...-..|+..
T Consensus 441 ~Ia~~l---Pt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~--Se~~~L~e~La~L 514 (846)
T KOG2066|consen 441 DIAPYL---PTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQN--SESTALLEVLAHL 514 (846)
T ss_pred hhhccC---CCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhh--ccchhHHHHHHHH
Confidence 433221 111111233344444444433 11111111 111 11111 1123344568999
Q ss_pred HHhcCCHHHHHHHHHhcCcCCH
Q 046312 275 YAKCGAVGCARLLFSRMEEINV 296 (514)
Q Consensus 275 ~~~~g~~~~A~~~~~~~~~~~~ 296 (514)
|...+++.+|...+-...++++
T Consensus 515 Yl~d~~Y~~Al~~ylklk~~~v 536 (846)
T KOG2066|consen 515 YLYDNKYEKALPIYLKLQDKDV 536 (846)
T ss_pred HHHccChHHHHHHHHhccChHH
Confidence 9999999999999998887544
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=85.65 E-value=2.3 Score=24.00 Aligned_cols=27 Identities=26% Similarity=0.240 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 046312 298 TWSAMILGLAQHGYAEEALELFSNMKN 324 (514)
Q Consensus 298 ~~~~li~~~~~~~~~~~a~~~~~~m~~ 324 (514)
+|..+...|...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 445555555556666666666655554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=85.47 E-value=18 Score=29.20 Aligned_cols=96 Identities=14% Similarity=0.105 Sum_probs=56.7
Q ss_pred hccCcHHHHHHHHHHHHHhhCCCCc---hHHHHHHHHHHHhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCCCc
Q 046312 342 NHAGMVEDGYRYFHEMEHVHGIKPM---RIHYHTMADILARAGHLKEAYTFIMNMPFQP-NPIVLRALLSASSIHDAKYQ 417 (514)
Q Consensus 342 ~~~~~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~ 417 (514)
...++.+++..+++.+.- +.|+ ..++...+ +...|+|++|..+|++....+ ....-..|+..|.....
T Consensus 21 L~~~d~~D~e~lLdALrv---LrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~--- 92 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRV---LRPNLKELDMFDGWL--LIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKG--- 92 (153)
T ss_pred HhcCCHHHHHHHHHHHHH---hCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcC---
Confidence 347888888888888874 3554 44444433 678899999999999987333 32333334333333333
Q ss_pred chHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 046312 418 DGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMK 463 (514)
Q Consensus 418 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 463 (514)
- + .|...+......|...++..+.+.+.
T Consensus 93 D-----------------p-~Wr~~A~~~le~~~~~~a~~Lv~al~ 120 (153)
T TIGR02561 93 D-----------------A-EWHVHADEVLARDADADAVALVRALL 120 (153)
T ss_pred C-----------------h-HHHHHHHHHHHhCCCHhHHHHHHHHh
Confidence 1 1 34444445555555555666666555
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion) | Back alignment and domain information |
|---|
Probab=84.67 E-value=11 Score=28.18 Aligned_cols=88 Identities=8% Similarity=0.051 Sum_probs=53.9
Q ss_pred cCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCHHHHHHHhhccCCCChhhHHHHHHHHHhCCChhHHHHHHHHH
Q 046312 142 ISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKRDACKVFDDMCERSVVSWNVIITVCVENLWLGEAVGYFVKM 221 (514)
Q Consensus 142 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 221 (514)
....++|..+.+.+...+- ....+--.-+..+.+.|++++|...=.....||...|-+|.. .+.|..+++...+.++
T Consensus 19 ~HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rl 95 (116)
T PF09477_consen 19 HHCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRL 95 (116)
T ss_dssp TT-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHH
Confidence 3456778888888877652 233333344556788899999855555556788888877754 4778888888888777
Q ss_pred HHCCCCCCHHHH
Q 046312 222 KDLGFEPDETTM 233 (514)
Q Consensus 222 ~~~~~~p~~~t~ 233 (514)
..+| .|....|
T Consensus 96 a~~g-~~~~q~F 106 (116)
T PF09477_consen 96 ASSG-SPELQAF 106 (116)
T ss_dssp CT-S-SHHHHHH
T ss_pred HhCC-CHHHHHH
Confidence 6655 4444444
|
The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C. |
| >PF13762 MNE1: Mitochondrial splicing apparatus component | Back alignment and domain information |
|---|
Probab=84.44 E-value=9.8 Score=30.57 Aligned_cols=95 Identities=15% Similarity=0.087 Sum_probs=68.8
Q ss_pred HHHHHHHhCCCCCh--HHHHHHHHhcccCCCCChHHHHHHHcccCC--------CCCcccHHHHHHHHHhCCC-chHHHH
Q 046312 47 IHAQIQVSGLQNDA--QILKELVRFCTLSSSKNLTYARSILCNYVN--------DSVPIPWNNLIRGYAWSDR-PREAVW 115 (514)
Q Consensus 47 ~~~~~~~~g~~~~~--~~~~~ll~~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~~li~~~~~~g~-~~~a~~ 115 (514)
....|.+.+..++. ...|.++.... ..+++.-.+.+++.+.. ..+..+|+.++.+..+... --.+..
T Consensus 24 ~~~y~~~~~~~~~~k~~fiN~iL~hl~--~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~ 101 (145)
T PF13762_consen 24 HLPYMQEENASQSTKTIFINCILNHLA--SYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLT 101 (145)
T ss_pred HHHHhhhcccChhHHHHHHHHHHHHHH--HccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHH
Confidence 33445566666665 56678888777 78888888888887642 2344678888888866655 345788
Q ss_pred HHHHHHHcCCCCCcchHHHHHHHHhccC
Q 046312 116 VFIDMKRRGIKPTEFTYPFVLKACAEIS 143 (514)
Q Consensus 116 ~~~~m~~~~~~p~~~~~~~ll~~~~~~g 143 (514)
+|+.|++.+.+++..-|..+++++.+..
T Consensus 102 Lf~~Lk~~~~~~t~~dy~~li~~~l~g~ 129 (145)
T PF13762_consen 102 LFNFLKKNDIEFTPSDYSCLIKAALRGY 129 (145)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHcCC
Confidence 8888888788888888999998876653
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=83.96 E-value=8.7 Score=28.20 Aligned_cols=47 Identities=13% Similarity=0.261 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHh
Q 046312 213 EAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIER 259 (514)
Q Consensus 213 ~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 259 (514)
++.+-++.+....+.|+.......+++|.+.+++..|.++++.++.+
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K 71 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK 71 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34455555555667777777777777777777777777777766643
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=83.59 E-value=2.4 Score=25.22 Aligned_cols=28 Identities=21% Similarity=0.229 Sum_probs=23.5
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 046312 437 QNLVIVANKYAEVGMWEKVSNVRRFMKN 464 (514)
Q Consensus 437 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 464 (514)
.++..|+.+|...|++++|..++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3577899999999999999999998864
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=83.54 E-value=8.1 Score=24.86 Aligned_cols=50 Identities=12% Similarity=0.084 Sum_probs=35.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCceeEEEECCeEEEEEecccCCcChHHHHHHHHHHHHHhhhcCC
Q 046312 439 LVIVANKYAEVGMWEKVSNVRRFMKNVGLKKMKGMSWVELGGSIHRFYSGYDSQVELAGIYQILETLNLHMKVLNF 514 (514)
Q Consensus 439 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 514 (514)
...++-++.+.|++++|.++.+.+.+... ...+|..+-+.+.+.++++++
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP--------------------------~N~Qa~~L~~~i~~~i~kdgl 53 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEIEP--------------------------DNRQAQSLKELIEDKIQKDGL 53 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHTT--------------------------S-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhCC--------------------------CcHHHHHHHHHHHHHHhccCC
Confidence 45678888999999999999998876443 345677777777777776653
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=83.46 E-value=2.8 Score=23.56 Aligned_cols=28 Identities=11% Similarity=0.146 Sum_probs=24.6
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 046312 437 QNLVIVANKYAEVGMWEKVSNVRRFMKN 464 (514)
Q Consensus 437 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 464 (514)
.+|..++..|...|++++|.+.|++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3578899999999999999999998765
|
... |
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=82.90 E-value=49 Score=32.28 Aligned_cols=145 Identities=12% Similarity=-0.013 Sum_probs=93.4
Q ss_pred CCccCCCCCCCCCcccchhhhHHHHHHHhhcChhHH-HHHHHHHHHhCCCCChHHHHHHHHhcccCCCCChHHHHHHHcc
Q 046312 9 TNHIFPPKPSNCNSDLLSKARQCLSFLKLCCSKKHL-YQIHAQIQVSGLQNDAQILKELVRFCTLSSSKNLTYARSILCN 87 (514)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~g~~~~A~~~~~~ 87 (514)
+|+-..++++....+......+...-+. .++...+ ++++..+....-.|+....-+.|.. ..|+++.+...+..
T Consensus 274 ~~~~~d~~~q~~~~~~~~~~~si~k~~~-~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~----~lg~ye~~~~~~s~ 348 (831)
T PRK15180 274 TNHHLDEGRQEKQDQIREITLSITKQLA-DGDIIAASQQLFAALRNQQQDPVLIQLRSVIFS----HLGYYEQAYQDISD 348 (831)
T ss_pred cccccccccCcCCcchhHHHHHHHHHhh-ccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHH----HhhhHHHHHHHhhc
Confidence 4455555554444433333322222222 2566555 6788888776667777666666654 56999999998876
Q ss_pred cCC--CCCcccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhC
Q 046312 88 YVN--DSVPIPWNNLIRGYAWSDRPREAVWVFIDMKRRGIKPTEFTYPFVLKACAEISGLNEGMQVQANVTKSG 159 (514)
Q Consensus 88 ~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 159 (514)
... .....+-..+++...+.|+++.|...-+-|....+. +.+.........-..|-++++.-.|+++....
T Consensus 349 ~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 349 VEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred hhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 652 334456778888888999999999999888776553 33333333334445677888888888887654
|
|
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=82.88 E-value=23 Score=33.87 Aligned_cols=64 Identities=16% Similarity=0.165 Sum_probs=47.9
Q ss_pred CHHHHHHH---HHHHHhcCCCCcchHHHHHHHHHHhcCCC-CCchHHHHHHHHH-hcCCHHHHHHHHHHHHh
Q 046312 398 NPIVLRAL---LSASSIHDAKYQDGVGNEVRRRLLELEPR-GSQNLVIVANKYA-EVGMWEKVSNVRRFMKN 464 (514)
Q Consensus 398 ~~~~~~~l---~~~~~~~~~~~~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~A~~~~~~m~~ 464 (514)
|...|.++ +..+.+.|- +..|.+..+.+..++|. ||-.-...++.|+ ++++++--+++.+....
T Consensus 99 NR~fflal~r~i~~L~~RG~---~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGC---WRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred chHHHHHHHHHHHHHHhcCc---HHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 44444444 445667777 99999999999999998 7766667777774 77888888888887665
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=82.41 E-value=36 Score=36.39 Aligned_cols=63 Identities=11% Similarity=0.081 Sum_probs=38.3
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhccCCh--HHHHHHHHHHHHh
Q 046312 197 SWNVIITVCVENLWLGEAVGYFVKMKDLGFEPD---ETTMLVVLSACTELGNL--SLGKWVHLQLIER 259 (514)
Q Consensus 197 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~t~~~ll~~~~~~g~~--~~a~~~~~~~~~~ 259 (514)
-|..|+..|...|+.++|+++|.+..+..-.-| ...+-.++..+.+.+.. +.++++-+...+.
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~ 573 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNK 573 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhcc
Confidence 588899999999999999999999876320011 11222344444444443 5555555554444
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=82.38 E-value=2.8 Score=23.62 Aligned_cols=31 Identities=19% Similarity=0.048 Sum_probs=19.0
Q ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCC
Q 046312 401 VLRALLSASSIHDAKYQDGVGNEVRRRLLELEPR 434 (514)
Q Consensus 401 ~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~ 434 (514)
+|..+...+...|+ .+.|.+.++++.+++|+
T Consensus 3 ~~~~lg~~y~~~~~---~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGD---YEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTS---HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCC
Confidence 34455556666666 66666666666666653
|
... |
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=81.78 E-value=18 Score=28.51 Aligned_cols=70 Identities=17% Similarity=0.120 Sum_probs=40.8
Q ss_pred CCchHHHHHHHHHHHhcCCHH---HHHHHHHhCC--CCCC--HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCC
Q 046312 364 KPMRIHYHTMADILARAGHLK---EAYTFIMNMP--FQPN--PIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGS 436 (514)
Q Consensus 364 ~p~~~~~~~li~~~~~~g~~~---~A~~~~~~~~--~~p~--~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 436 (514)
.++..+--.+..++.+..+.+ +-+.+|+++. ..|+ .....-|.-++.+.++ ++.+.+.++.+.+.+|++.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlke---Y~~s~~yvd~ll~~e~~n~ 105 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKE---YSKSLRYVDALLETEPNNR 105 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhh---HHHHHHHHHHHHhhCCCcH
Confidence 455555555666666655433 4455666553 2232 1222334556777777 7777777777777777754
|
|
| >PRK12798 chemotaxis protein; Reviewed | Back alignment and domain information |
|---|
Probab=81.50 E-value=52 Score=31.65 Aligned_cols=150 Identities=15% Similarity=0.137 Sum_probs=79.1
Q ss_pred cCCHHHHHHHHHhcCc----CCHHHHHHHHHH-HHHcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHhccCcHH
Q 046312 278 CGAVGCARLLFSRMEE----INVWTWSAMILG-LAQHGYAEEALELFSNMKNSSISPN----YVTFLGVLCACNHAGMVE 348 (514)
Q Consensus 278 ~g~~~~A~~~~~~~~~----~~~~~~~~li~~-~~~~~~~~~a~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~~~~~ 348 (514)
.|+..++.+.+..+.. +....|-.|+.+ .....+..+|+.+|+...-. .|. .....--+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHH
Confidence 4566666666665543 233445555544 33345666777777665542 233 222333344456667777
Q ss_pred HHHHHHHHHHHhhCCCCchHHHH-HHHHHHHh---cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCcchHHHHH
Q 046312 349 DGYRYFHEMEHVHGIKPMRIHYH-TMADILAR---AGHLKEAYTFIMNMPFQPNPIVLRALLSASSIHDAKYQDGVGNEV 424 (514)
Q Consensus 349 ~a~~~~~~~~~~~~~~p~~~~~~-~li~~~~~---~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~ 424 (514)
++..+-.....+|.-.|-...|. .+...+.+ .-..+....++..|.-.-....|..+...-...|+ .+.+..+
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk---~~lA~~A 279 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGK---TELARFA 279 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCc---HHHHHHH
Confidence 76666666655544444433222 22222222 22344455555555422234566666667777777 7777777
Q ss_pred HHHHHhcC
Q 046312 425 RRRLLELE 432 (514)
Q Consensus 425 ~~~~~~~~ 432 (514)
.+++..+.
T Consensus 280 s~~A~~L~ 287 (421)
T PRK12798 280 SERALKLA 287 (421)
T ss_pred HHHHHHhc
Confidence 77776665
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=81.45 E-value=24 Score=34.26 Aligned_cols=120 Identities=13% Similarity=0.115 Sum_probs=58.7
Q ss_pred cCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCCCcchHH
Q 046312 344 AGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP--FQPNPIVLRALLSASSIHDAKYQDGVG 421 (514)
Q Consensus 344 ~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~~~~a 421 (514)
.|+.-.|-+-+....+.+.-.|+.....+.| +...|+++.+...+.... +.....+..+++......++ .+.|
T Consensus 302 ~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r---~~~a 376 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLAR---WREA 376 (831)
T ss_pred ccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhh---HHHH
Confidence 3555444433333333233344433333322 345566666666665553 33344555556666555565 5555
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 046312 422 NEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNVGLK 468 (514)
Q Consensus 422 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 468 (514)
....+.+..-+-.++.....-+......|-+|++...|+++...+.+
T Consensus 377 ~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 377 LSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 55444444333333333333333334456677777777777655443
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=81.31 E-value=14 Score=31.58 Aligned_cols=68 Identities=7% Similarity=0.002 Sum_probs=34.5
Q ss_pred hHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCHHHHHHHhhcc-------CCCChhhHHHHHHHHHhCCChhHH
Q 046312 146 NEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKRDACKVFDDM-------CERSVVSWNVIITVCVENLWLGEA 214 (514)
Q Consensus 146 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~-------~~~~~~~~~~li~~~~~~~~~~~a 214 (514)
+.|.+.|-.+...+.--++.....|...|. ..+.+++..++.+. ...|+..+..|+..+.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 445555555554443334444444444443 44555555555444 134555666666666666666655
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=81.23 E-value=92 Score=34.30 Aligned_cols=25 Identities=16% Similarity=0.215 Sum_probs=18.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 046312 439 LVIVANKYAEVGMWEKVSNVRRFMK 463 (514)
Q Consensus 439 ~~~l~~~~~~~g~~~~A~~~~~~m~ 463 (514)
...|+.++...|..++|.++-+...
T Consensus 1187 ~~~Ll~~l~~~g~~eqa~~Lq~~f~ 1211 (1265)
T KOG1920|consen 1187 LKRLLEVLVTFGMDEQARALQKAFD 1211 (1265)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 4577888888888888877755443
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=80.98 E-value=41 Score=30.10 Aligned_cols=49 Identities=4% Similarity=0.032 Sum_probs=24.7
Q ss_pred cCCchHHHHHHHHHHHhCCCCCc---chHHHHHHHHHcCCCHHHHHHHhhcc
Q 046312 142 ISGLNEGMQVQANVTKSGLDSDV---YTNNNLVRFYGSCRRKRDACKVFDDM 190 (514)
Q Consensus 142 ~g~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~A~~~~~~~ 190 (514)
...+++|+.-|++..+..-.... .+.-.+|..+.+.|++++....+.++
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~ql 91 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQL 91 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 34666677777666654211111 12334455555555555555555544
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=80.37 E-value=12 Score=27.76 Aligned_cols=59 Identities=10% Similarity=0.177 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHH
Q 046312 213 EAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALI 272 (514)
Q Consensus 213 ~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 272 (514)
+..+-++.+....+.|+.......+.+|.+.+++..|.++++.+..+-- ....+|..++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~-~~~~~Y~~~l 86 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG-NKKEIYPYIL 86 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT-T-TTHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc-ChHHHHHHHH
Confidence 3444555555566777777777777777777777777777777665532 1222554444
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=80.20 E-value=5.1 Score=23.69 Aligned_cols=27 Identities=26% Similarity=0.315 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 046312 298 TWSAMILGLAQHGYAEEALELFSNMKN 324 (514)
Q Consensus 298 ~~~~li~~~~~~~~~~~a~~~~~~m~~ 324 (514)
+++.+...|...|++++|..++++...
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 455556666666666666666665543
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 59.8 bits (143), Expect = 1e-09
Identities = 28/188 (14%), Positives = 60/188 (31%), Gaps = 9/188 (4%)
Query: 221 MKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGA 280
+ P E + +L +L + + Q + Q A
Sbjct: 83 TRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQ 142
Query: 281 VGCARLLFSRMEE-------INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVT 333
+ A L + + ++A++LG A+ G +E + + +K++ ++P+ ++
Sbjct: 143 LPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202
Query: 334 FLGVL-CACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMN 392
+ L C R +M G+K + + RA LK +
Sbjct: 203 YAAALQCMGRQDQDAGTIERCLEQMSQ-EGLKLQALFTAVLLSEEDRATVLKAVHKVKPT 261
Query: 393 MPFQPNPI 400
P
Sbjct: 262 FSLPPQLP 269
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 44.0 bits (102), Expect = 1e-04
Identities = 22/173 (12%), Positives = 44/173 (25%), Gaps = 14/173 (8%)
Query: 120 MKRRGIKPTEFTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRR 179
++ P E +L+ L+ +++ L + +
Sbjct: 83 TRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQ 142
Query: 180 KRDACKVFDDMCER-------SVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETT 232
A + + ++ +N ++ E V +KD G PD +
Sbjct: 143 LPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202
Query: 233 MLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCAR 285
L + IER Q G L ++ R
Sbjct: 203 YAAALQCMGRQDQDA-------GTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 57.2 bits (137), Expect = 9e-09
Identities = 66/512 (12%), Positives = 165/512 (32%), Gaps = 121/512 (23%)
Query: 80 YARSILCNYVNDSVPIPWNNLIRGYA--WS--DRPREAVWVFIDMKRRGIKPTEFTYPFV 135
+SIL D + + + + W+ + E V F++ ++ Y F+
Sbjct: 41 MPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVE---EVLRIN---YKFL 94
Query: 136 LKA----CAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRF--YGSCRRK----RDACK 185
+ + S + Q + + D+ V+ N+ R Y R+ R A
Sbjct: 95 MSPIKTEQRQPSMMTRMYIEQRDRLYN--DNQVFAKYNVSRLQPYLKLRQALLELRPAKN 152
Query: 186 VF-DDM--CERSVVSWNVIITVCVENL------WLGEAVGYFVKMKDLGFEPDETTMLVV 236
V D + ++ V+ +V ++ V+ WL + + + E + + +
Sbjct: 153 VLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN--LKNCNSPETV-LEMLQKLLYQI 209
Query: 237 LSACTELGNLSLGKWVHLQLIE---RGTVLNCQLGTALI---DMY----AKCGAVGCARL 286
T + S + + I+ R + + L+ ++ + C L
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKIL 269
Query: 287 LFSR----MEEINVWTWSAMILGLAQHGYAE-EALELFS---NMKNS-------SISPNY 331
L +R + ++ T + + L E L + + + +P
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR 329
Query: 332 VTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIK-------P--MRIHYHTMADILARAGH 382
++ + + D +++ + + I+ P R + ++ + + H
Sbjct: 330 LSIIAESIR-DGLATW-DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS-VFPPSAH 386
Query: 383 LKEAYTFIM--NMPFQPNPIVLRALLSAS-----------SIHDAKYQDGVGN-----EV 424
+ ++ ++ +V+ L S SI Y + +
Sbjct: 387 IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI-YLELKVKLENEYAL 445
Query: 425 RRRLLE--LEPRGSQN---LVIVANKY---------AEVGMWEKVSNVR------RFMKN 464
R +++ P+ + + ++Y + E+++ R RF++
Sbjct: 446 HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQ 505
Query: 465 VGLKKMK--GMSWVELGGSIH-----RFYSGY 489
K++ +W G ++ +FY Y
Sbjct: 506 ----KIRHDSTAWNASGSILNTLQQLKFYKPY 533
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 54.9 bits (131), Expect = 5e-08
Identities = 79/546 (14%), Positives = 145/546 (26%), Gaps = 193/546 (35%)
Query: 3 RFPVPTTNHIFPPKPSNCNSDLLSKARQCLSFLK------LC----CSKKHL-------Y 45
R + N +F + K RQ L L+ + K + Y
Sbjct: 116 RDRLYNDNQVFAKYNVS-RLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY 174
Query: 46 QIHAQ-------IQVSGLQNDAQILKELVRFCTLSSSKNLTYARSILCNYVNDSVPIPWN 98
++ + + + + +L+ L + + + S I
Sbjct: 175 KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN--------WTSRSDHSSNIK-- 224
Query: 99 NLIRGYAWSDRPREAVWVFIDMKRRGIKPTEFTYPFVLKACAEISGLNEGMQVQANVTKS 158
+R ++ R + K Y L L V
Sbjct: 225 --LRIHSIQAELRR----LLKSKP---------YENCL--------L---------V--- 249
Query: 159 GLDSDVYTNNNLVRFYGSCR---RKRDACKVFDDMCERSVVSWNVIITVCVENLWLG--- 212
L +V F SC+ R V D +S + +++ +
Sbjct: 250 -LL-NVQNAKAWNAFNLSCKILLTTRFKQ-VTD------FLSAATTTHISLDHHSMTLTP 300
Query: 213 -EAVGYF-----VKMKDLGFEPDE--TTMLVVLSACTEL---GNLSLGKWVHLQLIERGT 261
E + +DL P E TT LS E G + W H+ + T
Sbjct: 301 DEVKSLLLKYLDCRPQDL---PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTT 357
Query: 262 V----LNCQLGTALIDMYAKCGAVGCARLLFSRMEEINVWT------WSAMILGLAQHGY 311
+ LN M+ + +F ++ T W +I
Sbjct: 358 IIESSLNVLEPAEYRKMFDRLS-------VF--PPSAHIPTILLSLIWFDVI-------- 400
Query: 312 AEEALELFSNMKNSSI---SPNYVTF------LGVLCACN-----HAGMVE--------- 348
+ + + + + S+ P T L + H +V+
Sbjct: 401 KSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFD 460
Query: 349 ---------DGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTF---IMNMPFQ 396
D Y Y H I +H L H + F ++ F
Sbjct: 461 SDDLIPPYLDQYFYSH------------IGHH-----LKNIEHPERMTLFRMVFLDFRFL 503
Query: 397 PNPI--VLRALLSASSIHDA-----KY------QDGVGNEVRRRLLELEPRGSQNLVIVA 443
I A ++ SI + Y D + +L+ P+ +NL+
Sbjct: 504 EQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLIC-- 561
Query: 444 NKYAEV 449
+KY ++
Sbjct: 562 SKYTDL 567
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 514 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.96 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.93 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.92 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.92 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.92 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.9 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.87 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.87 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.85 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.84 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.84 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.83 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.82 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.81 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.81 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.8 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.8 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.79 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.79 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.78 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.78 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.78 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.77 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.75 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.74 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.74 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.72 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.72 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.7 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.7 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.69 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.65 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.64 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.62 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.59 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.57 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.56 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.56 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.56 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.56 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.55 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.54 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.54 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.53 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.53 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.53 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.52 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.52 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.52 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.52 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.51 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.51 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.49 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.48 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.48 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.47 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.46 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.44 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.42 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.42 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.4 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.39 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.38 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.38 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.36 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.34 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.33 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.32 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.32 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.31 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.31 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.29 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.27 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.26 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.24 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.23 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.22 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.19 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.16 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.12 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.1 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.09 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.06 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.02 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.01 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.97 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.97 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.96 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.96 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.91 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.89 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.88 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.87 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.87 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.86 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.85 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.84 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.83 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.83 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.82 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.82 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.82 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.81 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.78 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.78 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.75 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.73 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.72 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.72 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.71 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.68 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.66 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.65 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.65 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.63 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.62 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.6 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.6 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.59 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.59 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.59 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.56 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.54 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.53 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.51 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.51 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.5 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.49 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.49 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.46 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.46 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.44 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.43 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.38 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.37 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.36 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.35 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.34 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.34 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.33 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.33 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.32 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.31 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.3 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.3 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.3 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.28 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.28 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.26 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.25 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.24 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.23 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.22 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.21 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.2 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.2 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.19 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.19 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.18 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.18 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.17 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.14 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.11 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.08 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.05 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.04 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.04 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.03 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.02 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.0 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.0 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.0 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.97 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.96 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.96 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.94 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 97.94 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 97.89 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.88 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.87 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.86 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.82 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.82 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.81 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.73 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.72 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.64 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.64 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.63 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.62 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.58 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.55 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.51 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.51 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.49 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.48 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 97.48 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.42 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.41 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 97.38 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.36 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.16 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.09 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.07 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.04 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.97 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 96.81 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 96.79 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.77 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.7 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.59 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.42 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.33 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.31 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.22 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.12 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 95.94 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.89 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 95.87 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.65 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 95.2 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.14 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.14 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 94.49 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 94.42 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 94.32 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 94.29 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 94.24 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 94.11 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 93.97 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 93.76 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 93.74 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 93.09 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 93.09 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 92.86 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 92.84 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 92.67 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 92.15 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 92.07 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 91.91 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 91.61 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 91.27 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 90.25 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 90.21 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 89.68 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 89.35 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 88.56 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 87.46 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 86.51 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 85.97 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 85.89 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 85.21 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 85.19 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 84.74 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 83.55 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 80.72 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 80.45 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-37 Score=318.33 Aligned_cols=427 Identities=9% Similarity=-0.016 Sum_probs=372.6
Q ss_pred hhhHHHHHHHhh---cChhHHHHHHHHHHHhCCCCChHHHHHHHHhcccCCCCChHHHHHHHcccCC-CCCcccHHHHHH
Q 046312 27 KARQCLSFLKLC---CSKKHLYQIHAQIQVSGLQNDAQILKELVRFCTLSSSKNLTYARSILCNYVN-DSVPIPWNNLIR 102 (514)
Q Consensus 27 ~~~~~~~ll~~~---~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~li~ 102 (514)
+...+..+.+.+ ++...+..+++.+.. ..|+..++..++..|. +.|++++|..+|+++.. .+++.+|+.++.
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~ 158 (597)
T 2xpi_A 83 REDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYC--CTGDYARAKCLLTKEDLYNRSSACRYLAAF 158 (597)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHH--HTTCHHHHHHHHHHTCGGGTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHH--HcCcHHHHHHHHHHHhccccchhHHHHHHH
Confidence 444455555544 678888999998885 4578889999999999 99999999999999832 678899999999
Q ss_pred HHHhCCCchHHHHHHHHHHHc---------------CCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchH
Q 046312 103 GYAWSDRPREAVWVFIDMKRR---------------GIKPTEFTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTN 167 (514)
Q Consensus 103 ~~~~~g~~~~a~~~~~~m~~~---------------~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 167 (514)
+|.+.|++++|+++|+++... |.+++..+|+.++.++.+.|++++|.++|+++.+.+ +.+...+
T Consensus 159 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~ 237 (597)
T 2xpi_A 159 CLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD-AKCYEAF 237 (597)
T ss_dssp HHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-chhhHHH
Confidence 999999999999999953221 223356789999999999999999999999999875 2233333
Q ss_pred HHH--------------------------------------HHHHHcCCCHHHHHHHhhccCC--CChhhHHHHHHHHHh
Q 046312 168 NNL--------------------------------------VRFYGSCRRKRDACKVFDDMCE--RSVVSWNVIITVCVE 207 (514)
Q Consensus 168 ~~l--------------------------------------i~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li~~~~~ 207 (514)
..+ +..|.+.|++++|.++|+++.+ ++..+|+.++.+|.+
T Consensus 238 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~ 317 (597)
T 2xpi_A 238 DQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFV 317 (597)
T ss_dssp HHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHH
T ss_pred HHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHH
Confidence 332 4556678999999999999976 789999999999999
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 046312 208 NLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLL 287 (514)
Q Consensus 208 ~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 287 (514)
.|++++|.++|+++.+.+ +.+..++..++.++.+.|++++|..+++.+.+.. +.+..+++.++.+|.+.|++++|.++
T Consensus 318 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 395 (597)
T 2xpi_A 318 RSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRY 395 (597)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHH
Confidence 999999999999999875 4477889999999999999999999999999765 45788999999999999999999999
Q ss_pred HHhcCc---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCC
Q 046312 288 FSRMEE---INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIK 364 (514)
Q Consensus 288 ~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 364 (514)
|+++.+ .+..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..++..++.+|.+.|++++|.++|+++.+. .+
T Consensus 396 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~ 472 (597)
T 2xpi_A 396 FSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL--FQ 472 (597)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CC
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CC
Confidence 999864 468899999999999999999999999999864 457889999999999999999999999999975 24
Q ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHHhCC-------CCCC--HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCC
Q 046312 365 PMRIHYHTMADILARAGHLKEAYTFIMNMP-------FQPN--PIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRG 435 (514)
Q Consensus 365 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~p~--~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~ 435 (514)
.+..+|..++..|.+.|++++|.++|+++. ..|+ ..+|..++.+|...|+ +++|.+.++.+.+.+|++
T Consensus 473 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~~ 549 (597)
T 2xpi_A 473 YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKM---YDAAIDALNQGLLLSTND 549 (597)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHSSCC
T ss_pred CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHhCCCC
Confidence 468899999999999999999999999983 3677 7899999999999999 999999999999999999
Q ss_pred CchHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 046312 436 SQNLVIVANKYAEVGMWEKVSNVRRFMKNVG 466 (514)
Q Consensus 436 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 466 (514)
+.+|..++.+|.+.|++++|.++++++.+..
T Consensus 550 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 580 (597)
T 2xpi_A 550 ANVHTAIALVYLHKKIPGLAITHLHESLAIS 580 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999998754
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-37 Score=315.23 Aligned_cols=431 Identities=10% Similarity=0.038 Sum_probs=363.6
Q ss_pred CChHHHHHHHHhcccCCCCChHHHHHHHcccCC-CCCcccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHH
Q 046312 58 NDAQILKELVRFCTLSSSKNLTYARSILCNYVN-DSVPIPWNNLIRGYAWSDRPREAVWVFIDMKRRGIKPTEFTYPFVL 136 (514)
Q Consensus 58 ~~~~~~~~ll~~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll 136 (514)
++...|+.++..|. +.|++++|..+|+++.. .|+..+|..++.+|.+.|++++|+.+|+++.. .+++..+++.++
T Consensus 82 ~~~~~~~~~~~~~~--~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~l~ 157 (597)
T 2xpi_A 82 SREDYLRLWRHDAL--MQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDL--YNRSSACRYLAA 157 (597)
T ss_dssp CHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCG--GGTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--HccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhc--cccchhHHHHHH
Confidence 57788999999999 99999999999998743 56778888899999999999999999998865 367888999999
Q ss_pred HHHhccCCchHHHHHHHHHHHh---------------CCCCCcchHHHHHHHHHcCCCHHHHHHHhhccCC--C-ChhhH
Q 046312 137 KACAEISGLNEGMQVQANVTKS---------------GLDSDVYTNNNLVRFYGSCRRKRDACKVFDDMCE--R-SVVSW 198 (514)
Q Consensus 137 ~~~~~~g~~~~a~~~~~~~~~~---------------~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~-~~~~~ 198 (514)
.+|.+.|++++|.++|+++... |.+++..+|+.++.+|.+.|++++|.++|+++.+ | +...+
T Consensus 158 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 237 (597)
T 2xpi_A 158 FCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAF 237 (597)
T ss_dssp HHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHH
Confidence 9999999999999999853211 1223477899999999999999999999999832 2 22333
Q ss_pred HH--------------------------------------HHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 046312 199 NV--------------------------------------IITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSAC 240 (514)
Q Consensus 199 ~~--------------------------------------li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~ 240 (514)
.. ++..|.+.|++++|.++|+++.+. +++..++..++.++
T Consensus 238 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~ 315 (597)
T 2xpi_A 238 DQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTL 315 (597)
T ss_dssp HHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHH
T ss_pred HHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHH
Confidence 22 244566778899999999988765 58899999999999
Q ss_pred hccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCc---CCHHHHHHHHHHHHHcCChHHHHH
Q 046312 241 TELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEE---INVWTWSAMILGLAQHGYAEEALE 317 (514)
Q Consensus 241 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~ 317 (514)
.+.|++++|..+|+++.+.+.. +..++..++.+|.+.|++++|.++|+++.+ .+..+|+.++..|.+.|++++|.+
T Consensus 316 ~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 394 (597)
T 2xpi_A 316 FVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARR 394 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHH
Confidence 9999999999999999988743 788899999999999999999999998864 468899999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC--C
Q 046312 318 LFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP--F 395 (514)
Q Consensus 318 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~ 395 (514)
+|+++.+.. +.+..+|..++.+|.+.|++++|.++|+++.+. .+.+..+|..++.+|.+.|++++|.++|+++. .
T Consensus 395 ~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 471 (597)
T 2xpi_A 395 YFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARL--FQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF 471 (597)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999998742 345778999999999999999999999999863 34578899999999999999999999999986 4
Q ss_pred CCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhc------CCCC-CchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 046312 396 QPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLEL------EPRG-SQNLVIVANKYAEVGMWEKVSNVRRFMKNVGLK 468 (514)
Q Consensus 396 ~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~------~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 468 (514)
+.+..+|..++..+...|+ +++|.+.++.+.+. +|++ ..+|..++.+|.+.|++++|.++++++.+.+
T Consensus 472 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-- 546 (597)
T 2xpi_A 472 QYDPLLLNELGVVAFNKSD---MQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-- 546 (597)
T ss_dssp CCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--
T ss_pred CCChHHHHHHHHHHHHhCC---HHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--
Confidence 4578999999999999999 99999999999887 4443 4578899999999999999999999998765
Q ss_pred CCCceeEEEECCeEEEEEecccCCcChHHHHHHHHHHHHHhh
Q 046312 469 KMKGMSWVELGGSIHRFYSGYDSQVELAGIYQILETLNLHMK 510 (514)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~ 510 (514)
|.....| ..+...|...|++++|.+.++++.+.-+
T Consensus 547 p~~~~~~-------~~l~~~~~~~g~~~~A~~~~~~~l~~~p 581 (597)
T 2xpi_A 547 TNDANVH-------TAIALVYLHKKIPGLAITHLHESLAISP 581 (597)
T ss_dssp SCCHHHH-------HHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred CCChHHH-------HHHHHHHHHhCCHHHHHHHHHHHHhcCC
Confidence 3344455 5677889999999999999999887544
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.4e-27 Score=229.46 Aligned_cols=368 Identities=10% Similarity=-0.019 Sum_probs=302.9
Q ss_pred CCCChHHHHHHHcccCC--CCCcccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCCchHHHHH
Q 046312 74 SSKNLTYARSILCNYVN--DSVPIPWNNLIRGYAWSDRPREAVWVFIDMKRRGIKPTEFTYPFVLKACAEISGLNEGMQV 151 (514)
Q Consensus 74 ~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 151 (514)
+.|++++|...+..+.. +.++..+..+...+.+.|++++|...++...+. .+.+..+|..+..++.+.|++++|...
T Consensus 11 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~ 89 (388)
T 1w3b_A 11 QAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ-NPLLAEAYSNLGNVYKERGQLQEAIEH 89 (388)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 67889999888877632 334456667777788889999999988887775 245667888888899999999999999
Q ss_pred HHHHHHhCCCCCcchHHHHHHHHHcCCCHHHHHHHhhccC---CCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC
Q 046312 152 QANVTKSGLDSDVYTNNNLVRFYGSCRRKRDACKVFDDMC---ERSVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEP 228 (514)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 228 (514)
|+++.+.. +.+..+|..+..++.+.|++++|.+.|+++. +.+...+..+...+...|++++|.+.|+++.+.. +-
T Consensus 90 ~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~ 167 (388)
T 1w3b_A 90 YRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PN 167 (388)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TT
T ss_pred HHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CC
Confidence 99888774 3345678888888999999999998888872 2345567778888888899999999999988763 34
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCc---CCHHHHHHHHHH
Q 046312 229 DETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEE---INVWTWSAMILG 305 (514)
Q Consensus 229 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 305 (514)
+..++..+...+...|++++|...++++.+.+. .+...+..+...+...|++++|...|++..+ .+..++..+...
T Consensus 168 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 246 (388)
T 1w3b_A 168 FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACV 246 (388)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHH
Confidence 567888888889999999999999999988763 3567888888999999999999999987764 357888899999
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHH
Q 046312 306 LAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKE 385 (514)
Q Consensus 306 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 385 (514)
+...|++++|...|+++.+.+ +.+..++..+..++.+.|++++|...++++.+. .+.+..++..+...+.+.|++++
T Consensus 247 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~ 323 (388)
T 1w3b_A 247 YYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEE 323 (388)
T ss_dssp HHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHH
T ss_pred HHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999998853 234677888999999999999999999999874 24567888999999999999999
Q ss_pred HHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCC
Q 046312 386 AYTFIMNMP-FQP-NPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGM 451 (514)
Q Consensus 386 A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 451 (514)
|.+.++++. ..| +..++..+...+...|+ +++|.+.++.+.++.|+.+.+|..++.++.+.|+
T Consensus 324 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~---~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 324 AVRLYRKALEVFPEFAAAHSNLASVLQQQGK---LQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHTTSCTTCHHHHHHHHHHHHTTTC---CHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 999999886 434 57889999999999999 9999999999999999999899999988887764
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=7.8e-30 Score=251.53 Aligned_cols=212 Identities=12% Similarity=0.060 Sum_probs=167.8
Q ss_pred hHHHHHHHHHHHcCCCCCcc-hHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCHHHHHHHhhc
Q 046312 111 REAVWVFIDMKRRGIKPTEF-TYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKRDACKVFDD 189 (514)
Q Consensus 111 ~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 189 (514)
..+..+.++++++++.+.+. .++.+|++|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+...++
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~------ 80 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES------ 80 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS------
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh------
Confidence 34556667777777766554 58888999999999999999999999999999999999999999888764332
Q ss_pred cCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHH
Q 046312 190 MCERSVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGT 269 (514)
Q Consensus 190 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 269 (514)
.+.+..++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.+++++|.+.|+.||..+|+
T Consensus 81 ----------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn 144 (501)
T 4g26_A 81 ----------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYG 144 (501)
T ss_dssp ----------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred ----------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceeh
Confidence 2345568888999999999999999999999999999999999999999999999999988888
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCc----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 046312 270 ALIDMYAKCGAVGCARLLFSRMEE----INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHA 344 (514)
Q Consensus 270 ~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 344 (514)
++|.+|++.|++++|.++|++|.+ ||..+|++||.+|++.|++++|.+++++|.+.|..|+..||+.++..|+..
T Consensus 145 ~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 145 PALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 888888888888888888888864 788888888888888888888888888888888888888888888887764
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=7.3e-29 Score=244.63 Aligned_cols=184 Identities=15% Similarity=0.172 Sum_probs=176.0
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC---------hHHHHHHHHHHHHhCCCCchh
Q 046312 196 VSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGN---------LSLGKWVHLQLIERGTVLNCQ 266 (514)
Q Consensus 196 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~---------~~~a~~~~~~~~~~~~~~~~~ 266 (514)
..++.+|++|++.|++++|+++|++|.+.|+.||..||+.||.+|++.+. ++.|.++|++|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 46788999999999999999999999999999999999999999987664 688999999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCc----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 046312 267 LGTALIDMYAKCGAVGCARLLFSRMEE----INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACN 342 (514)
Q Consensus 267 ~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 342 (514)
+|+++|.+|++.|++++|.++|++|.+ ||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.||.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 999999999999999999999999974 8999999999999999999999999999999999999999999999999
Q ss_pred ccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhc
Q 046312 343 HAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARA 380 (514)
Q Consensus 343 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 380 (514)
+.|++++|.+++++|.+. |..|+..||+.++..|+..
T Consensus 187 ~~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCHHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHSH
T ss_pred hCCCHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhcC
Confidence 999999999999999997 9999999999999998753
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=2.2e-26 Score=222.64 Aligned_cols=355 Identities=13% Similarity=0.057 Sum_probs=310.9
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHcCCCCCc-chHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCC
Q 046312 100 LIRGYAWSDRPREAVWVFIDMKRRGIKPTE-FTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCR 178 (514)
Q Consensus 100 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 178 (514)
+...+.+.|++++|++.++.+.+. .|+. ..+..+...+...|++++|...++...+.. +.+..+|..+..+|.+.|
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g 81 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERG 81 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCC
Confidence 345677899999999999998875 3444 466677778889999999999999998875 567789999999999999
Q ss_pred CHHHHHHHhhcc---CCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHH
Q 046312 179 RKRDACKVFDDM---CERSVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQ 255 (514)
Q Consensus 179 ~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 255 (514)
++++|...|+++ .+.+..+|..+..++.+.|++++|...|+++.+.. +.+...+..+...+...|++++|...+++
T Consensus 82 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 82 QLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 999999999988 33456789999999999999999999999999864 23445667788888999999999999999
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCc---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH
Q 046312 256 LIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEE---INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYV 332 (514)
Q Consensus 256 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 332 (514)
+.+... .+..++..+...|...|++++|...|+++.+ .+...|..+...+...|++++|...+++..... +.+..
T Consensus 161 al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~ 238 (388)
T 1w3b_A 161 AIETQP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAV 238 (388)
T ss_dssp HHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHH
T ss_pred HHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHH
Confidence 998753 3678899999999999999999999999875 356788999999999999999999999998753 23477
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCC-chHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHH
Q 046312 333 TFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKP-MRIHYHTMADILARAGHLKEAYTFIMNMP--FQPNPIVLRALLSAS 409 (514)
Q Consensus 333 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~ 409 (514)
++..+..++...|++++|...++++.+. .| +..+|..+...+.+.|++++|.+.|+++. .+.+..++..+...+
T Consensus 239 ~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 315 (388)
T 1w3b_A 239 VHGNLACVYYEQGLIDLAIDTYRRAIEL---QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHT---CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHH
Confidence 8889999999999999999999999874 44 46789999999999999999999999986 556789999999999
Q ss_pred HhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 046312 410 SIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNVG 466 (514)
Q Consensus 410 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 466 (514)
...|+ +++|...++.+.+..|++..++..++.+|.+.|++++|.+.++++.+..
T Consensus 316 ~~~g~---~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 369 (388)
T 1w3b_A 316 REQGN---IEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS 369 (388)
T ss_dssp HTTTC---HHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC
T ss_pred HHcCC---HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 99999 9999999999999999999999999999999999999999999998743
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.4e-23 Score=209.02 Aligned_cols=396 Identities=11% Similarity=-0.061 Sum_probs=317.5
Q ss_pred hHHHHHHHHhcccCCCCChHHHHHHHcccCC-CCCcccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHH
Q 046312 60 AQILKELVRFCTLSSSKNLTYARSILCNYVN-DSVPIPWNNLIRGYAWSDRPREAVWVFIDMKRRGIKPTEFTYPFVLKA 138 (514)
Q Consensus 60 ~~~~~~ll~~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 138 (514)
...+......+. +.|++++|...|+++.. .|++..|..+..++.+.|++++|++.|+++.+.+ +.+...|..+..+
T Consensus 6 a~~~~~~g~~~~--~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFF--RNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHH--HTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--HhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHH
Confidence 345566667777 89999999999998853 5778889999999999999999999999998863 3455688899999
Q ss_pred HhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCHHHHHHHh-------------------------------
Q 046312 139 CAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKRDACKVF------------------------------- 187 (514)
Q Consensus 139 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~------------------------------- 187 (514)
+...|++++|...|+++.+.+ +++......++..+........+.+.+
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV 161 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred HHHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence 999999999999999998876 344444444444443322222222111
Q ss_pred -------hccC----------CCChhhHHHHHHHHHh---CCChhHHHHHHHHHHH-----CCC--------CCCHHHHH
Q 046312 188 -------DDMC----------ERSVVSWNVIITVCVE---NLWLGEAVGYFVKMKD-----LGF--------EPDETTML 234 (514)
Q Consensus 188 -------~~~~----------~~~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~-----~~~--------~p~~~t~~ 234 (514)
.... +.+...+......+.. .|++++|...|+++.+ ... +.+..++.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (514)
T 2gw1_A 162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE 241 (514)
T ss_dssp HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHH
Confidence 1110 1123444445555554 8999999999999988 311 22346777
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCc---CCHHHHHHHHHHHHHcCC
Q 046312 235 VVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEE---INVWTWSAMILGLAQHGY 311 (514)
Q Consensus 235 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~ 311 (514)
.+...+...|++++|...++.+.+.... ...+..+..+|...|++++|...++++.+ .+...+..+...+...|+
T Consensus 242 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 319 (514)
T 2gw1_A 242 HTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQN 319 (514)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCC
Confidence 8888999999999999999999998755 88899999999999999999999998875 467789999999999999
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHH
Q 046312 312 AEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIM 391 (514)
Q Consensus 312 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 391 (514)
+++|...++++.+.. +.+...+..+...+...|++++|..+++++.+.. +.+...+..+...+.+.|++++|...++
T Consensus 320 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~ 396 (514)
T 2gw1_A 320 YDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF--PEAPEVPNFFAEILTDKNDFDKALKQYD 396 (514)
T ss_dssp TTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc--ccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999999864 3356778888999999999999999999998752 3346788889999999999999999998
Q ss_pred hCC----CCCC----HHHHHHHHHHHHh---cCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHH
Q 046312 392 NMP----FQPN----PIVLRALLSASSI---HDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRR 460 (514)
Q Consensus 392 ~~~----~~p~----~~~~~~l~~~~~~---~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 460 (514)
++. ..++ ...+..+...+.. .|+ ++.|...++.+.+..|+++.++..++.+|.+.|++++|...++
T Consensus 397 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 473 (514)
T 2gw1_A 397 LAIELENKLDGIYVGIAPLVGKATLLTRNPTVEN---FIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFE 473 (514)
T ss_dssp HHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTH---HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCC---HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 874 2222 4488889999999 999 9999999999999999999999999999999999999999999
Q ss_pred HHHhCCC
Q 046312 461 FMKNVGL 467 (514)
Q Consensus 461 ~m~~~~~ 467 (514)
+..+.+.
T Consensus 474 ~a~~~~~ 480 (514)
T 2gw1_A 474 ESADLAR 480 (514)
T ss_dssp HHHHHCS
T ss_pred HHHHhcc
Confidence 9987653
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.92 E-value=2.3e-22 Score=198.33 Aligned_cols=335 Identities=10% Similarity=-0.024 Sum_probs=225.2
Q ss_pred cccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHH
Q 046312 94 PIPWNNLIRGYAWSDRPREAVWVFIDMKRRGIKPTEFTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRF 173 (514)
Q Consensus 94 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 173 (514)
+..|..+...+.+.|++++|+.+|+++.+. .+.+..+|..+..++...|++++|...++++.+.+ +.+..++..+..+
T Consensus 26 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 103 (450)
T 2y4t_A 26 VEKHLELGKKLLAAGQLADALSQFHAAVDG-DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHL 103 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHH
Confidence 345666677777777777777777777654 23345566666777777777777777777776664 3345566666666
Q ss_pred HHcCCCHHHHHHHhhccCC--C-Ch---hhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChH
Q 046312 174 YGSCRRKRDACKVFDDMCE--R-SV---VSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLS 247 (514)
Q Consensus 174 ~~~~~~~~~A~~~~~~~~~--~-~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~ 247 (514)
|.+.|++++|...|+++.. | +. ..+..++..+... .+..+...+...|+++
T Consensus 104 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------------------~~~~~a~~~~~~~~~~ 160 (450)
T 2y4t_A 104 LLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQ-----------------------RLRSQALNAFGSGDYT 160 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHTCHH
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHcCCHH
Confidence 6666666666666666532 2 22 3444443331100 1112233355566677
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCc---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 046312 248 LGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEE---INVWTWSAMILGLAQHGYAEEALELFSNMKN 324 (514)
Q Consensus 248 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 324 (514)
+|...++.+.+.. +.+..++..+..+|.+.|++++|...|+++.+ .+..+|..+...|...|++++|...|+++.+
T Consensus 161 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 239 (450)
T 2y4t_A 161 AAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLK 239 (450)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7777766666654 23556666677777777777777777776653 4567777777777778888888888877775
Q ss_pred CCCCCC-HHHHHHH------------HHHHhccCcHHHHHHHHHHHHHhhCCCCc-----hHHHHHHHHHHHhcCCHHHH
Q 046312 325 SSISPN-YVTFLGV------------LCACNHAGMVEDGYRYFHEMEHVHGIKPM-----RIHYHTMADILARAGHLKEA 386 (514)
Q Consensus 325 ~g~~p~-~~~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A 386 (514)
. .|+ ...+..+ ..+|...|++++|..+|+++.+. .|+ ...+..+...+.+.|++++|
T Consensus 240 ~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~A 314 (450)
T 2y4t_A 240 L--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVEA 314 (450)
T ss_dssp H--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred h--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHHHH
Confidence 3 333 2333333 67788889999999999888865 344 34677888888899999999
Q ss_pred HHHHHhCC--CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHH------------HHHhcC--
Q 046312 387 YTFIMNMP--FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVAN------------KYAEVG-- 450 (514)
Q Consensus 387 ~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~------------~~~~~g-- 450 (514)
...++++. .+.+...|..+..+|...|+ ++.|...++.+.++.|+++.++..++. .|...|
T Consensus 315 ~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~ 391 (450)
T 2y4t_A 315 IRVCSEVLQMEPDNVNALKDRAEAYLIEEM---YDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVK 391 (450)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSS
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCC
Confidence 99998875 33467888889999999999 999999999999999988888887773 355555
Q ss_pred ---CHHHHHHHHHHH
Q 046312 451 ---MWEKVSNVRRFM 462 (514)
Q Consensus 451 ---~~~~A~~~~~~m 462 (514)
+.+++.+.++++
T Consensus 392 ~~~~~~~~~~~y~~~ 406 (450)
T 2y4t_A 392 RNAKKQEIIKAYRKL 406 (450)
T ss_dssp TTCCTTHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHH
Confidence 566777777763
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.92 E-value=2.1e-22 Score=198.68 Aligned_cols=351 Identities=11% Similarity=-0.021 Sum_probs=234.7
Q ss_pred CCChHHHHHHHHhcccCCCCChHHHHHHHcccCC--CCCcccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHH
Q 046312 57 QNDAQILKELVRFCTLSSSKNLTYARSILCNYVN--DSVPIPWNNLIRGYAWSDRPREAVWVFIDMKRRGIKPTEFTYPF 134 (514)
Q Consensus 57 ~~~~~~~~~ll~~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 134 (514)
+.++..+..+...|. +.|++++|..+|+++.. +.++.+|..+..++...|++++|+..|+++.+.+ +.+...+..
T Consensus 23 p~~~~~~~~~~~~~~--~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~ 99 (450)
T 2y4t_A 23 MADVEKHLELGKKLL--AAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQ 99 (450)
T ss_dssp CHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHH
Confidence 446788899999999 99999999999998742 4567889999999999999999999999998864 345668999
Q ss_pred HHHHHhccCCchHHHHHHHHHHHhCCCCCc---chHHHHHHHHHcCCCHHHHHHHhhccCCCChhhHHHHHHHHHhCCCh
Q 046312 135 VLKACAEISGLNEGMQVQANVTKSGLDSDV---YTNNNLVRFYGSCRRKRDACKVFDDMCERSVVSWNVIITVCVENLWL 211 (514)
Q Consensus 135 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~ 211 (514)
+..++...|++++|.+.++++.+.. +.+. .++..++..+... .+..+...+.+.|++
T Consensus 100 l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~-------------------~~~~~a~~~~~~~~~ 159 (450)
T 2y4t_A 100 RGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQ-------------------RLRSQALNAFGSGDY 159 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHH-------------------HHHHHHHHHHHcCCH
Confidence 9999999999999999999998764 2234 5666665542211 122233344455555
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 046312 212 GEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRM 291 (514)
Q Consensus 212 ~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 291 (514)
++|+..|+++.+.. +.+...+..+..++...|++++|...++.+.+.. +.+..++..+..+|...|++++|...|+++
T Consensus 160 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 237 (450)
T 2y4t_A 160 TAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVREC 237 (450)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55555555555442 2344555555555555566666655555555543 224455555556666666666666666555
Q ss_pred Cc--C-CHHHHHHH------------HHHHHHcCChHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHhccCcHHHHH
Q 046312 292 EE--I-NVWTWSAM------------ILGLAQHGYAEEALELFSNMKNSSISPN-----YVTFLGVLCACNHAGMVEDGY 351 (514)
Q Consensus 292 ~~--~-~~~~~~~l------------i~~~~~~~~~~~a~~~~~~m~~~g~~p~-----~~~~~~ll~~~~~~~~~~~a~ 351 (514)
.+ | +...+..+ ...+...|++++|..+|+++.+. .|+ ...+..+..++.+.|++++|.
T Consensus 238 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~ 315 (450)
T 2y4t_A 238 LKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAI 315 (450)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 43 2 22333322 67778888888888888888773 344 335677777888888888888
Q ss_pred HHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC-HHHHHHHHHH------------HHhcC--CC
Q 046312 352 RYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP-FQPN-PIVLRALLSA------------SSIHD--AK 415 (514)
Q Consensus 352 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~------------~~~~~--~~ 415 (514)
..++++.+. .+.+...|..+..+|...|++++|...++++. ..|+ ...+..+..+ |...| ..
T Consensus 316 ~~~~~a~~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~ 393 (450)
T 2y4t_A 316 RVCSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRN 393 (450)
T ss_dssp HHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTT
T ss_pred HHHHHHHHh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCcc
Confidence 888887764 13346778888888888888888888888774 4454 4455544422 33333 11
Q ss_pred CcchHHHHHHHH-HHhcCCCCC
Q 046312 416 YQDGVGNEVRRR-LLELEPRGS 436 (514)
Q Consensus 416 ~~~~~a~~~~~~-~~~~~p~~~ 436 (514)
...+++.+.++. +.+..|+..
T Consensus 394 ~~~~~~~~~y~~~~l~~~pd~~ 415 (450)
T 2y4t_A 394 AKKQEIIKAYRKLALQWHPDNF 415 (450)
T ss_dssp CCTTHHHHHHHHHHHHSCGGGC
T ss_pred CCHHHHHHHHHHHHHHhCCCCC
Confidence 125667777775 667777643
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.3e-22 Score=203.67 Aligned_cols=399 Identities=8% Similarity=-0.074 Sum_probs=314.9
Q ss_pred HHHHHhhcChhHHHHHHHHHHHhCCCCChHHHHHHHHhcccCCCCChHHHHHHHcccCC--CCCcccHHHHHHHHHhCCC
Q 046312 32 LSFLKLCCSKKHLYQIHAQIQVSGLQNDAQILKELVRFCTLSSSKNLTYARSILCNYVN--DSVPIPWNNLIRGYAWSDR 109 (514)
Q Consensus 32 ~~ll~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~ 109 (514)
...+...++...+...++.+.+.. |++..+..+...|. +.|++++|...|+++.. +.++.+|..+..++.+.|+
T Consensus 13 g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~--~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 88 (514)
T 2gw1_A 13 GNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYV--SVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGK 88 (514)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHH--HHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHH--HHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhh
Confidence 344455588999999999999877 78999999999999 99999999999998742 4455789999999999999
Q ss_pred chHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHh-------------------------------
Q 046312 110 PREAVWVFIDMKRRGIKPTEFTYPFVLKACAEISGLNEGMQVQANVTKS------------------------------- 158 (514)
Q Consensus 110 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~------------------------------- 158 (514)
+++|+..|+++.+.+ +++......++..+........+.+.+..+...
T Consensus 89 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (514)
T 2gw1_A 89 FADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASF 167 (514)
T ss_dssp HHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHH
Confidence 999999999998874 345555555555444332222222222111100
Q ss_pred ----CC---------CCCcchHHHHHHHHHc---CCCHHHHHHHhhccCC-----------------CChhhHHHHHHHH
Q 046312 159 ----GL---------DSDVYTNNNLVRFYGS---CRRKRDACKVFDDMCE-----------------RSVVSWNVIITVC 205 (514)
Q Consensus 159 ----~~---------~~~~~~~~~li~~~~~---~~~~~~A~~~~~~~~~-----------------~~~~~~~~li~~~ 205 (514)
.. +.+...+..+...+.. .|++++|...|+++.. .+..++..+...+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (514)
T 2gw1_A 168 FGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFK 247 (514)
T ss_dssp HTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHH
T ss_pred HhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHH
Confidence 00 0113334444444454 8999999999988743 1356788889999
Q ss_pred HhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH
Q 046312 206 VENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCAR 285 (514)
Q Consensus 206 ~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 285 (514)
...|++++|...|+++.+.. |+...+..+..++...|++++|...++.+.+... .+..++..+...|...|++++|.
T Consensus 248 ~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~ 324 (514)
T 2gw1_A 248 FLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDS-NNSSVYYHRGQMNFILQNYDQAG 324 (514)
T ss_dssp HHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCT-TCTHHHHHHHHHHHHTTCTTHHH
T ss_pred HHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCc-CCHHHHHHHHHHHHHhCCHHHHH
Confidence 99999999999999999875 3488888999999999999999999999988753 36778899999999999999999
Q ss_pred HHHHhcCc---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhC
Q 046312 286 LLFSRMEE---INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHG 362 (514)
Q Consensus 286 ~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 362 (514)
..|+++.+ .+...+..+...+...|++++|..+++++.+.. +.+..++..+..++...|++++|...++++.+...
T Consensus 325 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 403 (514)
T 2gw1_A 325 KDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELEN 403 (514)
T ss_dssp HHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhh
Confidence 99998864 456788999999999999999999999998753 33567788889999999999999999999987532
Q ss_pred CCCc----hHHHHHHHHHHHh---cCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCC
Q 046312 363 IKPM----RIHYHTMADILAR---AGHLKEAYTFIMNMP--FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEP 433 (514)
Q Consensus 363 ~~p~----~~~~~~li~~~~~---~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p 433 (514)
-.++ ...+..+...+.+ .|++++|...++++. .+.+..++..+...+...|+ +++|...++.+.++.|
T Consensus 404 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~a~~~~~ 480 (514)
T 2gw1_A 404 KLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQED---IDEAITLFEESADLAR 480 (514)
T ss_dssp TSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCS
T ss_pred ccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHhcc
Confidence 2232 3388889999999 999999999999885 34467888999999999999 9999999999999999
Q ss_pred CCCchHHHH
Q 046312 434 RGSQNLVIV 442 (514)
Q Consensus 434 ~~~~~~~~l 442 (514)
+++..+..+
T Consensus 481 ~~~~~~~~~ 489 (514)
T 2gw1_A 481 TMEEKLQAI 489 (514)
T ss_dssp SHHHHHHHH
T ss_pred ccHHHHHHH
Confidence 887665544
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.90 E-value=6.3e-21 Score=192.55 Aligned_cols=390 Identities=11% Similarity=0.010 Sum_probs=294.6
Q ss_pred hHHHHHHHHhcccCCCCChHHHHHHHcccCC--CCCcccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHH
Q 046312 60 AQILKELVRFCTLSSSKNLTYARSILCNYVN--DSVPIPWNNLIRGYAWSDRPREAVWVFIDMKRRGIKPTEFTYPFVLK 137 (514)
Q Consensus 60 ~~~~~~ll~~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 137 (514)
...+..+...+. +.|++++|...|+++.. +.++.+|..+..++.+.|++++|++.|+++.+.+ +.+...+..+..
T Consensus 25 a~~~~~~g~~~~--~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~ 101 (537)
T 3fp2_A 25 AVQLKNRGNHFF--TAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHH--HTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHH--HhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHH
Confidence 466777777888 89999999999998743 4566788999999999999999999999998863 345667888889
Q ss_pred HHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCHHHHHHHhhccCC-------------------------
Q 046312 138 ACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKRDACKVFDDMCE------------------------- 192 (514)
Q Consensus 138 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~------------------------- 192 (514)
++...|++++|...++.+ .. .|+.. ...+..+...+...+|...++++..
T Consensus 102 ~~~~~g~~~~A~~~~~~~-~~--~~~~~--~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLSVL-SL--NGDFD--GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDS 176 (537)
T ss_dssp HHHHHTCHHHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCH
T ss_pred HHHHcCCHHHHHHHHHHH-hc--CCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcCh
Confidence 999999999999999633 22 22211 1122333333444555555555422
Q ss_pred ------------CChh---hHHHHHHHHHh--------CCChhHHHHHHHHHHHCCCCCC--------HHHHHHHHHHHh
Q 046312 193 ------------RSVV---SWNVIITVCVE--------NLWLGEAVGYFVKMKDLGFEPD--------ETTMLVVLSACT 241 (514)
Q Consensus 193 ------------~~~~---~~~~li~~~~~--------~~~~~~a~~~~~~m~~~~~~p~--------~~t~~~ll~~~~ 241 (514)
.+.. ....+...+.. .|++++|..+++++.+.. |+ ..++..+...+.
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~g~~~~ 254 (537)
T 3fp2_A 177 HLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN--TVDDPLRENAALALCYTGIFHF 254 (537)
T ss_dssp HHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC--CCcchhhHHHHHHHHHHHHHHH
Confidence 1111 22222222222 247889999999988753 33 235666777888
Q ss_pred ccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCc---CCHHHHHHHHHHHHHcCChHHHHHH
Q 046312 242 ELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEE---INVWTWSAMILGLAQHGYAEEALEL 318 (514)
Q Consensus 242 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~ 318 (514)
..|++++|...++.+.+... +...+..+...|...|++++|...|+++.+ .+..+|..+...+...|++++|...
T Consensus 255 ~~~~~~~A~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 332 (537)
T 3fp2_A 255 LKNNLLDAQVLLQESINLHP--TPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKED 332 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHCC--CHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcccHHHHHHHHHHHHhcCC--CchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 89999999999999998764 478888999999999999999999998875 4578899999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC----
Q 046312 319 FSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP---- 394 (514)
Q Consensus 319 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~---- 394 (514)
++++.+.. +.+...+..+..++...|++++|..+++++.+.. +.+...+..+...+.+.|++++|.+.|+++.
T Consensus 333 ~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 409 (537)
T 3fp2_A 333 FQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF--PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEE 409 (537)
T ss_dssp HHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC
Confidence 99998853 2345778888899999999999999999998752 3346688889999999999999999998873
Q ss_pred ----CCCCHHHHHHHHHHHHhc----------CCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHH
Q 046312 395 ----FQPNPIVLRALLSASSIH----------DAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRR 460 (514)
Q Consensus 395 ----~~p~~~~~~~l~~~~~~~----------~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 460 (514)
.......+..+...+... |+ +++|...++.+.+..|+++.++..++.+|.+.|++++|.+.++
T Consensus 410 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 486 (537)
T 3fp2_A 410 VQEKIHVGIGPLIGKATILARQSSQDPTQLDEEK---FNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFE 486 (537)
T ss_dssp HCSSCSSTTHHHHHHHHHHHHHHTC----CCHHH---HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHHHhhccchhhhHhH---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 111223344455667777 88 9999999999999999999999999999999999999999999
Q ss_pred HHHhCCC
Q 046312 461 FMKNVGL 467 (514)
Q Consensus 461 ~m~~~~~ 467 (514)
+..+...
T Consensus 487 ~al~~~~ 493 (537)
T 3fp2_A 487 DSAILAR 493 (537)
T ss_dssp HHHHHC-
T ss_pred HHHHhCC
Confidence 9887543
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.87 E-value=5.9e-20 Score=185.43 Aligned_cols=393 Identities=9% Similarity=-0.021 Sum_probs=298.5
Q ss_pred HHHHHhhcChhHHHHHHHHHHHhCCCCChHHHHHHHHhcccCCCCChHHHHHHHcccCC--CCCcccHHHHHHHHHhCCC
Q 046312 32 LSFLKLCCSKKHLYQIHAQIQVSGLQNDAQILKELVRFCTLSSSKNLTYARSILCNYVN--DSVPIPWNNLIRGYAWSDR 109 (514)
Q Consensus 32 ~~ll~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~ 109 (514)
...+...++...+...++..++.. +.++..+..+...|. +.|++++|...|++... +.++.+|..+..++...|+
T Consensus 32 g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~--~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 108 (537)
T 3fp2_A 32 GNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYI--STGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGN 108 (537)
T ss_dssp HHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHH--HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHH--HcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCC
Confidence 334444578889999999998876 456788999999999 99999999999998743 4456788999999999999
Q ss_pred chHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhC------CCCCcc------------------
Q 046312 110 PREAVWVFIDMKRRGIKPTEFTYPFVLKACAEISGLNEGMQVQANVTKSG------LDSDVY------------------ 165 (514)
Q Consensus 110 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~------------------ 165 (514)
+++|++.|+.+ . ..|+.. ...+..+...+....|...++.+.... ..|+..
T Consensus 109 ~~~A~~~~~~~-~--~~~~~~--~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (537)
T 3fp2_A 109 FTDAMFDLSVL-S--LNGDFD--GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSV 183 (537)
T ss_dssp HHHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTS
T ss_pred HHHHHHHHHHH-h--cCCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHH
Confidence 99999999743 2 223322 222334445555677777777774321 111111
Q ss_pred ------------hHHHHHHHHHcC--------CCHHHHHHHhhccCC--CC--------hhhHHHHHHHHHhCCChhHHH
Q 046312 166 ------------TNNNLVRFYGSC--------RRKRDACKVFDDMCE--RS--------VVSWNVIITVCVENLWLGEAV 215 (514)
Q Consensus 166 ------------~~~~li~~~~~~--------~~~~~A~~~~~~~~~--~~--------~~~~~~li~~~~~~~~~~~a~ 215 (514)
....+...+... |++++|..+++++.+ |+ ..++..+...+...|++++|.
T Consensus 184 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~ 263 (537)
T 3fp2_A 184 NTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQ 263 (537)
T ss_dssp CCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHH
Confidence 222233232222 478899999998843 22 235677778899999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCc--
Q 046312 216 GYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEE-- 293 (514)
Q Consensus 216 ~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-- 293 (514)
..|+++.+. .|+...+..+...+...|++++|...++.+.+... .+..++..+...|...|++++|...|+++.+
T Consensus 264 ~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 340 (537)
T 3fp2_A 264 VLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNP-EYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN 340 (537)
T ss_dssp HHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 999999986 46688888999999999999999999999998864 3678899999999999999999999998875
Q ss_pred -CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCC----chH
Q 046312 294 -INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKP----MRI 368 (514)
Q Consensus 294 -~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p----~~~ 368 (514)
.+...|..+...+...|++++|..+++++.+.. +.+...+..+..++...|++++|...++++.+...-.+ ...
T Consensus 341 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 419 (537)
T 3fp2_A 341 PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIG 419 (537)
T ss_dssp TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHH
Confidence 356789999999999999999999999999863 34466888889999999999999999999887521111 122
Q ss_pred HHHHHHHHHHhc----------CCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCC
Q 046312 369 HYHTMADILARA----------GHLKEAYTFIMNMP--FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGS 436 (514)
Q Consensus 369 ~~~~li~~~~~~----------g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 436 (514)
.+..+...+.+. |++++|...|+++. .+.+...+..+...+...|+ +++|.+.++.+.++.|...
T Consensus 420 ~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~~~~~ 496 (537)
T 3fp2_A 420 PLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEK---IDEAIELFEDSAILARTMD 496 (537)
T ss_dssp HHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHC--CH
T ss_pred HHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHhCCCcH
Confidence 244556677777 99999999999986 44467889999999999999 9999999999999999876
Q ss_pred chH
Q 046312 437 QNL 439 (514)
Q Consensus 437 ~~~ 439 (514)
...
T Consensus 497 ~~~ 499 (537)
T 3fp2_A 497 EKL 499 (537)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.87 E-value=5.1e-19 Score=168.48 Aligned_cols=322 Identities=9% Similarity=-0.052 Sum_probs=195.2
Q ss_pred cccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHH
Q 046312 94 PIPWNNLIRGYAWSDRPREAVWVFIDMKRRGIKPTEFTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRF 173 (514)
Q Consensus 94 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 173 (514)
+..|..+...+...|++++|+..|+++.+.. +.+...+..+..++...|++++|...++++.+.. +.+...+..+..+
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 3445666667777777777777777776642 3344566666677777777777777777776653 2344556666666
Q ss_pred HHcCCCHHHHHHHhhccCC--C----ChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChH
Q 046312 174 YGSCRRKRDACKVFDDMCE--R----SVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLS 247 (514)
Q Consensus 174 ~~~~~~~~~A~~~~~~~~~--~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~ 247 (514)
+...|++++|...|++..+ | +...+..+..... ...+..+...+...|+++
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~~ 137 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADYT 137 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCHH
Confidence 6666666666666666522 2 1222222210000 001112234555566666
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCc---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 046312 248 LGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEE---INVWTWSAMILGLAQHGYAEEALELFSNMKN 324 (514)
Q Consensus 248 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 324 (514)
+|...++.+.+... .+..++..+...+...|++++|...++++.+ .+...+..+...+...|++++|...+++..+
T Consensus 138 ~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 216 (359)
T 3ieg_A 138 AAITFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLK 216 (359)
T ss_dssp HHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC-CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 66666666655542 2455566666666666666666666666543 3456666666677777777777777777665
Q ss_pred CCCCCCHHHHH------------HHHHHHhccCcHHHHHHHHHHHHHhhCCCCc-h----HHHHHHHHHHHhcCCHHHHH
Q 046312 325 SSISPNYVTFL------------GVLCACNHAGMVEDGYRYFHEMEHVHGIKPM-R----IHYHTMADILARAGHLKEAY 387 (514)
Q Consensus 325 ~g~~p~~~~~~------------~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~----~~~~~li~~~~~~g~~~~A~ 387 (514)
.. +.+...+. .+...+...|++++|...++++.+. .|+ . ..+..+...+.+.|++++|.
T Consensus 217 ~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 292 (359)
T 3ieg_A 217 LD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSVAEYTVRSKERICHCFSKDEKPVEAI 292 (359)
T ss_dssp HC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred hC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHHccCHHHHH
Confidence 32 11222221 2245567777888888887777764 233 1 22445667777788888888
Q ss_pred HHHHhCC--CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 046312 388 TFIMNMP--FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAE 448 (514)
Q Consensus 388 ~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 448 (514)
+.++++. .+.+...+..+...+...|+ +++|.+.++.+.++.|++..++..+..++..
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 293 RICSEVLQMEPDNVNALKDRAEAYLIEEM---YDEAIQDYEAAQEHNENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 8777764 33366777777777888888 8888888888888888777666666665544
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.8e-18 Score=163.34 Aligned_cols=304 Identities=12% Similarity=0.025 Sum_probs=228.0
Q ss_pred chHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCHHHHHHHhhcc---CCCChhhHHHHHHHHH
Q 046312 130 FTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKRDACKVFDDM---CERSVVSWNVIITVCV 206 (514)
Q Consensus 130 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~li~~~~ 206 (514)
..+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++ .+.+...|..+...+.
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLL 82 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 455666667777777777777777777664 334566666677777777777777777666 2234556666666777
Q ss_pred hCCChhHHHHHHHHHHHCCCCC---C-HHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHH
Q 046312 207 ENLWLGEAVGYFVKMKDLGFEP---D-ETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVG 282 (514)
Q Consensus 207 ~~~~~~~a~~~~~~m~~~~~~p---~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 282 (514)
..|++++|...|+++.+. .| + ...+..+..... ...+..+...+...|+++
T Consensus 83 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~~ 137 (359)
T 3ieg_A 83 KQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADYT 137 (359)
T ss_dssp HHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCHH
T ss_pred HcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCHH
Confidence 777777777777766654 33 1 122211111100 112234567889999999
Q ss_pred HHHHHHHhcCc---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 046312 283 CARLLFSRMEE---INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEH 359 (514)
Q Consensus 283 ~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 359 (514)
+|.+.|+++.+ .+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...+++..+
T Consensus 138 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 216 (359)
T 3ieg_A 138 AAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLK 216 (359)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999999875 467889999999999999999999999999853 44677888999999999999999999999987
Q ss_pred hhCCCCc-hHHHH------------HHHHHHHhcCCHHHHHHHHHhCC-CCCC-H----HHHHHHHHHHHhcCCCCcchH
Q 046312 360 VHGIKPM-RIHYH------------TMADILARAGHLKEAYTFIMNMP-FQPN-P----IVLRALLSASSIHDAKYQDGV 420 (514)
Q Consensus 360 ~~~~~p~-~~~~~------------~li~~~~~~g~~~~A~~~~~~~~-~~p~-~----~~~~~l~~~~~~~~~~~~~~~ 420 (514)
. .|+ ...+. .+...+.+.|++++|.+.++++. ..|+ . ..+..+...+...|+ ++.
T Consensus 217 ~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~---~~~ 290 (359)
T 3ieg_A 217 L---DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEK---PVE 290 (359)
T ss_dssp H---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTC---HHH
T ss_pred h---CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccC---HHH
Confidence 5 343 22222 23667889999999999999885 3444 3 335567788999999 999
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 046312 421 GNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNVG 466 (514)
Q Consensus 421 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 466 (514)
|...++.+.+..|+++.++..++.+|.+.|++++|.+.+++..+..
T Consensus 291 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 336 (359)
T 3ieg_A 291 AIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN 336 (359)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999998754
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.84 E-value=2.1e-19 Score=169.23 Aligned_cols=346 Identities=11% Similarity=0.030 Sum_probs=162.3
Q ss_pred CCCChHHHHHHHcccCCCCCcccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCCchHHHHHHH
Q 046312 74 SSKNLTYARSILCNYVNDSVPIPWNNLIRGYAWSDRPREAVWVFIDMKRRGIKPTEFTYPFVLKACAEISGLNEGMQVQA 153 (514)
Q Consensus 74 ~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 153 (514)
+.|++++|...+++++ .| .+|..+..++.+.|++++|++.|.+ .+|..+|..++.++...|++++|+.+++
T Consensus 15 ~~~~ld~A~~fae~~~-~~--~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN-EP--AVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC-Ch--HHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 6788999999999997 55 4899999999999999999999965 2577799999999999999999999888
Q ss_pred HHHHhCCCCCcchHHHHHHHHHcCCCHHHHHHHhhccCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHH
Q 046312 154 NVTKSGLDSDVYTNNNLVRFYGSCRRKRDACKVFDDMCERSVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTM 233 (514)
Q Consensus 154 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~ 233 (514)
..++. .+++.+.+.++.+|.+.|+++++.++++. |+..+|+.+...|...|.+++|..+|..+ ..|
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~ 151 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNF 151 (449)
T ss_dssp -------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCH
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhH
Confidence 77764 45678889999999999999999888864 67789999999999999999999999977 478
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCChH
Q 046312 234 LVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEEINVWTWSAMILGLAQHGYAE 313 (514)
Q Consensus 234 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 313 (514)
..+..++.+.|++++|.+.+..+ .++.+|..++.+|...|+++.|......+. .++.....++..|.+.|+++
T Consensus 152 ~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~e 224 (449)
T 1b89_A 152 GRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFE 224 (449)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHH
Confidence 99999999999999999999988 378899999999999999999988777655 44444557889999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCC------chHHHHHHHHHHHhcCCHHHHH
Q 046312 314 EALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKP------MRIHYHTMADILARAGHLKEAY 387 (514)
Q Consensus 314 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p------~~~~~~~li~~~~~~g~~~~A~ 387 (514)
+|..+++...... +-....|+-+.-+|++- ++++..+.++....+-.++| +...|..++-.|...++++.|.
T Consensus 225 Eai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~ 302 (449)
T 1b89_A 225 ELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 302 (449)
T ss_dssp HHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHH
Confidence 9999999988643 34455666666666653 34444444443333224444 3567888999999999999998
Q ss_pred HHHHhCC-CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHH
Q 046312 388 TFIMNMP-FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRR 460 (514)
Q Consensus 388 ~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 460 (514)
..+-+-+ ..-+...+ .....+..+ .+---++.....+..|. .++.|..++...=+...+..+++
T Consensus 303 ~tm~~h~~~a~~~~~f---~~~~~kv~n---~elyYkai~fyl~~~p~---~l~~ll~~l~~~ld~~r~v~~~~ 367 (449)
T 1b89_A 303 ITMMNHPTDAWKEGQF---KDIITKVAN---VELYYRAIQFYLEFKPL---LLNDLLMVLSPRLDHTRAVNYFS 367 (449)
T ss_dssp HHHHHSTTTTCCHHHH---HHHHHHCSS---THHHHHHHHHHHHHCGG---GHHHHHHHHGGGCCHHHHHHHHH
T ss_pred HHHHhCChhhhhhHHH---HHHHhchhH---HHHHHHHHHHHHhcCHH---HHHHHHHHHHhccCcHHHHHHHH
Confidence 8776664 22233332 233344444 44455555555544443 34444444433334444444333
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=3.2e-18 Score=161.02 Aligned_cols=265 Identities=8% Similarity=-0.028 Sum_probs=145.8
Q ss_pred CCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCHHHHHHHhhcc---CCCChhhHHHH
Q 046312 125 IKPTEFTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKRDACKVFDDM---CERSVVSWNVI 201 (514)
Q Consensus 125 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~l 201 (514)
.+.+...+..+...+...|++++|.++++++.+.. +.+...+..++..+...|++++|..+++++ .+.+...|..+
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 96 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAV 96 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHH
Confidence 34555566666667777777777777777776664 334555556666666777777777766666 22345566666
Q ss_pred HHHHHhCC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 046312 202 ITVCVENL-WLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGA 280 (514)
Q Consensus 202 i~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 280 (514)
...+...| ++++|...|++..+.. +.+...+..+...+...|++++|...++.+.+.... +...+..+...|...|+
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~ 174 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNN 174 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhh
Confidence 66666666 6677777776666543 223455566666666666666666666666655422 33344445555555555
Q ss_pred HHHHHHHHHhcCc---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHhccCcHHH
Q 046312 281 VGCARLLFSRMEE---INVWTWSAMILGLAQHGYAEEALELFSNMKNSS--------ISPNYVTFLGVLCACNHAGMVED 349 (514)
Q Consensus 281 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g--------~~p~~~~~~~ll~~~~~~~~~~~ 349 (514)
+++|...|++..+ .+...+..+...+...|++++|...++++.+.. .+....++..+..++...|++++
T Consensus 175 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 175 SKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 5555555555443 234455555555555555555555555554421 01123344444445555555555
Q ss_pred HHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 046312 350 GYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP 394 (514)
Q Consensus 350 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 394 (514)
|...++++.+.. +.+...+..+...+.+.|++++|.+.++++.
T Consensus 255 A~~~~~~a~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 297 (330)
T 3hym_B 255 ALDYHRQALVLI--PQNASTYSAIGYIHSLMGNFENAVDYFHTAL 297 (330)
T ss_dssp HHHHHHHHHHHS--TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTT
T ss_pred HHHHHHHHHhhC--ccchHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 555555544421 1123344444444445555555555554443
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.1e-17 Score=155.38 Aligned_cols=279 Identities=10% Similarity=-0.035 Sum_probs=139.7
Q ss_pred CCcchHHHHHHHHHcCCCHHHHHHHhhcc---CCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 046312 162 SDVYTNNNLVRFYGSCRRKRDACKVFDDM---CERSVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLS 238 (514)
Q Consensus 162 ~~~~~~~~li~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~ 238 (514)
.+...+..+...+...|++++|.++|+++ .+.+...+..++.++...|++++|..+++++.+.. +.+...+..+..
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 98 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGC 98 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHH
Confidence 34444455555555555555555555554 22233344444455555555555555555555432 223444445555
Q ss_pred HHhccC-ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCc---CCHHHHHHHHHHHHHcCChHH
Q 046312 239 ACTELG-NLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEE---INVWTWSAMILGLAQHGYAEE 314 (514)
Q Consensus 239 ~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~ 314 (514)
.+...| ++++|...++.+.+... .+...+..+...|...|++++|...|+++.+ .+...+..+...+...|++++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~ 177 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLEK-TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKL 177 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTCT-TCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHH
Confidence 555555 55555555555554431 2344455555555555555555555555443 223444445555555555555
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhC-------CCCchHHHHHHHHHHHhcCCHHHHH
Q 046312 315 ALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHG-------IKPMRIHYHTMADILARAGHLKEAY 387 (514)
Q Consensus 315 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-------~~p~~~~~~~li~~~~~~g~~~~A~ 387 (514)
|...++++.+.. +.+...+..+...+...|++++|...++++.+... .+.....+..+...+.+.|++++|.
T Consensus 178 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 256 (330)
T 3hym_B 178 AERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEAL 256 (330)
T ss_dssp HHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHH
Confidence 555555555432 22344455555555555555555555555554210 0122344555555555555555555
Q ss_pred HHHHhCC--CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 046312 388 TFIMNMP--FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKY 446 (514)
Q Consensus 388 ~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 446 (514)
..++++. .+.+...+..+...+...|+ +++|.+.++.+.++.|+++..+..++.++
T Consensus 257 ~~~~~a~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 257 DYHRQALVLIPQNASTYSAIGYIHSLMGN---FENAVDYFHTALGLRRDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHHHHHHHSTTCSHHHHHHHHHHHHHTC---HHHHHHHHHTTTTTCSCCHHHHHHHHHHH
T ss_pred HHHHHHHhhCccchHHHHHHHHHHHHhcc---HHHHHHHHHHHHccCCCchHHHHHHHHHH
Confidence 5555543 22234445555555555555 55555555555555555555555555555
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.82 E-value=4.9e-17 Score=161.97 Aligned_cols=366 Identities=12% Similarity=-0.020 Sum_probs=295.7
Q ss_pred ChHHHHHHHHhcccCC----CCChHHHHHHHcccCCCCCcccHHHHHHHHHh----CCCchHHHHHHHHHHHcCCCCCcc
Q 046312 59 DAQILKELVRFCTLSS----SKNLTYARSILCNYVNDSVPIPWNNLIRGYAW----SDRPREAVWVFIDMKRRGIKPTEF 130 (514)
Q Consensus 59 ~~~~~~~ll~~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~ 130 (514)
++..+..+-..|. . .++++.|...|++.....++.++..|-..|.. .+++++|++.|++..+.| +..
T Consensus 38 ~~~a~~~lg~~y~--~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~ 112 (490)
T 2xm6_A 38 EAKAQLELGYRYF--QGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQ 112 (490)
T ss_dssp CHHHHHHHHHHHH--HTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred CHHHHHHHHHHHH--cCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHH
Confidence 5566666666665 5 89999999999987535567788888888888 899999999999998865 556
Q ss_pred hHHHHHHHHhc----cCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHc----CCCHHHHHHHhhccC-CCChhhHHHH
Q 046312 131 TYPFVLKACAE----ISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGS----CRRKRDACKVFDDMC-ERSVVSWNVI 201 (514)
Q Consensus 131 ~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~~~-~~~~~~~~~l 201 (514)
.+..+...+.. .+++++|...|++..+.| +...+..|...|.. .+++++|.+.|++.. ..+...+..+
T Consensus 113 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~L 189 (490)
T 2xm6_A 113 AQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQL 189 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 67777777777 789999999999998876 56677888888887 789999999998873 3567788888
Q ss_pred HHHHHh----CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 046312 202 ITVCVE----NLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTE----LGNLSLGKWVHLQLIERGTVLNCQLGTALID 273 (514)
Q Consensus 202 i~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 273 (514)
...|.. .+++++|...|++..+.| +...+..+...+.. .+++++|...++...+.| +...+..+..
T Consensus 190 g~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~ 263 (490)
T 2xm6_A 190 GYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGY 263 (490)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHH
T ss_pred HHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHH
Confidence 888888 899999999999998865 55667777777765 789999999999998875 4566777778
Q ss_pred HHHh----cCCHHHHHHHHHhcCc-CCHHHHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 046312 274 MYAK----CGAVGCARLLFSRMEE-INVWTWSAMILGLAQH-----GYAEEALELFSNMKNSSISPNYVTFLGVLCACNH 343 (514)
Q Consensus 274 ~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 343 (514)
.|.. .++.++|..+|++..+ .+...+..+...|... +++++|..+|++..+.| +...+..+...|..
T Consensus 264 ~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~ 340 (490)
T 2xm6_A 264 ILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFR 340 (490)
T ss_dssp HHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH
T ss_pred HHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHh
Confidence 8887 8999999999998875 5677888888888887 89999999999999875 44566667777766
Q ss_pred cC---cHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----c
Q 046312 344 AG---MVEDGYRYFHEMEHVHGIKPMRIHYHTMADILAR----AGHLKEAYTFIMNMPFQPNPIVLRALLSASSI----H 412 (514)
Q Consensus 344 ~~---~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~ 412 (514)
.| +.++|..+|++..+. .+...+..+...|.. .+++++|...|++.....+...+..|...|.. .
T Consensus 341 ~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~ 416 (490)
T 2xm6_A 341 LGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVE 416 (490)
T ss_dssp SCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSC
T ss_pred CCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCC
Confidence 56 889999999999873 356778888888888 89999999999988644567788888888887 7
Q ss_pred CCCCcchHHHHHHHHHHhcCCC---CCchHHHHHHHHHh
Q 046312 413 DAKYQDGVGNEVRRRLLELEPR---GSQNLVIVANKYAE 448 (514)
Q Consensus 413 ~~~~~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 448 (514)
++ .++|...++++.+.+|+ ++.+...++.++..
T Consensus 417 ~d---~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 417 RD---YVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp CC---HHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred CC---HHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 78 99999999999999854 55555566555543
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.81 E-value=4.6e-16 Score=154.90 Aligned_cols=362 Identities=14% Similarity=0.002 Sum_probs=300.5
Q ss_pred HHHHcccCCCCCcccHHHHHHHHHh----CCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHhc----cCCchHHHHHHH
Q 046312 82 RSILCNYVNDSVPIPWNNLIRGYAW----SDRPREAVWVFIDMKRRGIKPTEFTYPFVLKACAE----ISGLNEGMQVQA 153 (514)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~ 153 (514)
...+.......++.++..+-..|.. .+++++|+..|++..+.| +...+..+...+.. .++.++|...|+
T Consensus 27 ~~~~~~~a~~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~ 103 (490)
T 2xm6_A 27 LEQLKQKAESGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYK 103 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 3444433215677788888888887 899999999999998865 56677788888887 899999999999
Q ss_pred HHHHhCCCCCcchHHHHHHHHHc----CCCHHHHHHHhhccCC-CChhhHHHHHHHHHh----CCChhHHHHHHHHHHHC
Q 046312 154 NVTKSGLDSDVYTNNNLVRFYGS----CRRKRDACKVFDDMCE-RSVVSWNVIITVCVE----NLWLGEAVGYFVKMKDL 224 (514)
Q Consensus 154 ~~~~~~~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~ 224 (514)
+..+.| +...+..|...|.. .+++++|...|++..+ .+...+..+...|.. .+++++|.+.|++..+.
T Consensus 104 ~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~ 180 (490)
T 2xm6_A 104 KAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ 180 (490)
T ss_dssp HHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 998876 56777888888988 8899999999998843 467788888888887 78999999999999987
Q ss_pred CCCCCHHHHHHHHHHHhc----cCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cCCHHHHHHHHHhcCc-CC
Q 046312 225 GFEPDETTMLVVLSACTE----LGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAK----CGAVGCARLLFSRMEE-IN 295 (514)
Q Consensus 225 ~~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~ 295 (514)
| +...+..+...+.. .++.++|...++...+.| +...+..+...|.. .+++++|..+|++..+ .+
T Consensus 181 ~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~ 254 (490)
T 2xm6_A 181 G---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGN 254 (490)
T ss_dssp T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTC
T ss_pred C---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 5 66777788888877 899999999999999876 56677788888886 8899999999998775 56
Q ss_pred HHHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc-----CcHHHHHHHHHHHHHhhCCCCc
Q 046312 296 VWTWSAMILGLAQ----HGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHA-----GMVEDGYRYFHEMEHVHGIKPM 366 (514)
Q Consensus 296 ~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~p~ 366 (514)
...+..+...|.. .++.++|..+|++..+.| +...+..+...|... ++.++|...+++..+. + +
T Consensus 255 ~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-~---~ 327 (490)
T 2xm6_A 255 SIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-G---D 327 (490)
T ss_dssp HHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-T---C
T ss_pred HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-C---C
Confidence 7788888888888 899999999999998765 455666677777776 8999999999999874 2 4
Q ss_pred hHHHHHHHHHHHhcC---CHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCCCcchHHHHHHHHHHhcCCCCCchH
Q 046312 367 RIHYHTMADILARAG---HLKEAYTFIMNMPFQPNPIVLRALLSASSI----HDAKYQDGVGNEVRRRLLELEPRGSQNL 439 (514)
Q Consensus 367 ~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 439 (514)
...+..+...|.+.| +.++|.+.|++.....+...+..|...|.. .++ .++|...++++.+.+ ++.++
T Consensus 328 ~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~---~~~A~~~~~~A~~~~--~~~a~ 402 (490)
T 2xm6_A 328 ATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKD---EQQAAIWMRKAAEQG--LSAAQ 402 (490)
T ss_dssp HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCC---HHHHHHHHHHHHHTT--CHHHH
T ss_pred HHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCC---HHHHHHHHHHHHhCC--CHHHH
Confidence 456777888887766 789999999988644678888888888888 677 999999999998865 46788
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHHHHhCCC
Q 046312 440 VIVANKYAE----VGMWEKVSNVRRFMKNVGL 467 (514)
Q Consensus 440 ~~l~~~~~~----~g~~~~A~~~~~~m~~~~~ 467 (514)
..|+.+|.+ .++.++|...|++..+.+.
T Consensus 403 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 403 VQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 999999998 8999999999999998774
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.81 E-value=5.4e-18 Score=162.22 Aligned_cols=283 Identities=9% Similarity=-0.038 Sum_probs=164.5
Q ss_pred CCCchHHHH-HHHHHHHcC---CCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCHHH
Q 046312 107 SDRPREAVW-VFIDMKRRG---IKPTEFTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKRD 182 (514)
Q Consensus 107 ~g~~~~a~~-~~~~m~~~~---~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 182 (514)
.|++++|++ .|++..+.. ...+...+..+...+...|++++|...++++.+.. +.+..++..+..+|...|++++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHH
Confidence 355666666 555443321 01123445566666666666666666666666553 3345566666666666666666
Q ss_pred HHHHhhcc---CCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHH---------------HHHHHhccC
Q 046312 183 ACKVFDDM---CERSVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLV---------------VLSACTELG 244 (514)
Q Consensus 183 A~~~~~~~---~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~---------------ll~~~~~~g 244 (514)
|...|+++ .+.+..++..+...+...|++++|...++++.+.... +...+.. .+..+...|
T Consensus 117 A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (368)
T 1fch_A 117 AISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSDS 195 (368)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhhcc
Confidence 66666655 2335566666666777777777777777776664311 1111110 122223666
Q ss_pred ChHHHHHHHHHHHHhCCCC-chhHHHHHHHHHHhcCCHHHHHHHHHhcCc---CCHHHHHHHHHHHHHcCChHHHHHHHH
Q 046312 245 NLSLGKWVHLQLIERGTVL-NCQLGTALIDMYAKCGAVGCARLLFSRMEE---INVWTWSAMILGLAQHGYAEEALELFS 320 (514)
Q Consensus 245 ~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~ 320 (514)
++++|...++.+.+..... +..++..+...|...|++++|...|+++.+ .+..+|..+...+...|++++|...|+
T Consensus 196 ~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 275 (368)
T 1fch_A 196 LFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYR 275 (368)
T ss_dssp HHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 7777777777776654332 456666677777777777777777766553 345667777777777777777777777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCC--C-------chHHHHHHHHHHHhcCCHHHHHHHHH
Q 046312 321 NMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIK--P-------MRIHYHTMADILARAGHLKEAYTFIM 391 (514)
Q Consensus 321 ~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--p-------~~~~~~~li~~~~~~g~~~~A~~~~~ 391 (514)
++.+.. +.+..++..+..++...|++++|...++++.+...-. | ....|..+..+|.+.|++++|..+++
T Consensus 276 ~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 276 RALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred HHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHH
Confidence 776642 2345566667777777777777777777766531100 0 14566677777777777777776665
Q ss_pred h
Q 046312 392 N 392 (514)
Q Consensus 392 ~ 392 (514)
+
T Consensus 355 ~ 355 (368)
T 1fch_A 355 R 355 (368)
T ss_dssp T
T ss_pred H
Confidence 4
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.80 E-value=7.2e-18 Score=161.36 Aligned_cols=279 Identities=11% Similarity=-0.061 Sum_probs=202.2
Q ss_pred CCCHHHHHH-HhhccCC--C-----ChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHH
Q 046312 177 CRRKRDACK-VFDDMCE--R-----SVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSL 248 (514)
Q Consensus 177 ~~~~~~A~~-~~~~~~~--~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~ 248 (514)
.|++++|.. .+++... + +...+..+...+.+.|++++|...|+++.+.. +.+..++..+..++...|++++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHH
Confidence 356666666 5554411 1 23456666667777777777777777776653 3455666667777777777777
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCc--C-CHHHHHH---------------HHHHHHHcC
Q 046312 249 GKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEE--I-NVWTWSA---------------MILGLAQHG 310 (514)
Q Consensus 249 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~---------------li~~~~~~~ 310 (514)
|...++.+.+... .+..++..+..+|...|++++|...|+++.+ | +...+.. .+..+...|
T Consensus 117 A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (368)
T 1fch_A 117 AISALRRCLELKP-DNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDS 195 (368)
T ss_dssp HHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHH
T ss_pred HHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcc
Confidence 7777777766652 3566667777777777777777777776653 1 1111110 233344889
Q ss_pred ChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHH
Q 046312 311 YAEEALELFSNMKNSSISP-NYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTF 389 (514)
Q Consensus 311 ~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 389 (514)
++++|..+++++.+..... +..++..+..++...|++++|...++++.+. .+.+...+..+...+.+.|++++|...
T Consensus 196 ~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~ 273 (368)
T 1fch_A 196 LFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAA 273 (368)
T ss_dssp HHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999998853221 4788888999999999999999999999875 133477889999999999999999999
Q ss_pred HHhCC--CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCC-----------CchHHHHHHHHHhcCCHHHHH
Q 046312 390 IMNMP--FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRG-----------SQNLVIVANKYAEVGMWEKVS 456 (514)
Q Consensus 390 ~~~~~--~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~A~ 456 (514)
|+++. .+.+...+..+...+...|+ +++|...++.+.++.|++ ..+|..++.+|...|++++|.
T Consensus 274 ~~~al~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 350 (368)
T 1fch_A 274 YRRALELQPGYIRSRYNLGISCINLGA---HREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 350 (368)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHH
Confidence 99885 34467889999999999999 999999999999998877 678999999999999999999
Q ss_pred HHHHHH
Q 046312 457 NVRRFM 462 (514)
Q Consensus 457 ~~~~~m 462 (514)
.++++.
T Consensus 351 ~~~~~~ 356 (368)
T 1fch_A 351 AADARD 356 (368)
T ss_dssp HHHTTC
T ss_pred HhHHHH
Confidence 988743
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.80 E-value=6e-16 Score=155.71 Aligned_cols=396 Identities=11% Similarity=-0.000 Sum_probs=289.0
Q ss_pred CCChHHHHHHHHhcccCCCCChHHHHHHHcccCC--CCCcccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHH
Q 046312 57 QNDAQILKELVRFCTLSSSKNLTYARSILCNYVN--DSVPIPWNNLIRGYAWSDRPREAVWVFIDMKRRGIKPTEFTYPF 134 (514)
Q Consensus 57 ~~~~~~~~~ll~~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 134 (514)
+-+...|..++.. . +.|+++.|+.+|+++.. +.+...|..++..+.+.|++++|..+|+++.+. .|+...|..
T Consensus 10 P~~~~~w~~l~~~-~--~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~ 84 (530)
T 2ooe_A 10 PYDLDAWSILIRE-A--QNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKC 84 (530)
T ss_dssp TTCHHHHHHHHHH-H--HSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHH
T ss_pred CCCHHHHHHHHHH-H--HhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHH
Confidence 3367788888885 6 68999999999998863 234467889999999999999999999999875 467767766
Q ss_pred HHHHH-hccCCchHHHH----HHHHHHHh-CCCC-CcchHHHHHHHHHc---------CCCHHHHHHHhhccCC-CC---
Q 046312 135 VLKAC-AEISGLNEGMQ----VQANVTKS-GLDS-DVYTNNNLVRFYGS---------CRRKRDACKVFDDMCE-RS--- 194 (514)
Q Consensus 135 ll~~~-~~~g~~~~a~~----~~~~~~~~-~~~~-~~~~~~~li~~~~~---------~~~~~~A~~~~~~~~~-~~--- 194 (514)
.+... ...|+.+.|.+ +|+..... |..| +...|...+....+ .|+++.|..+|++... |+
T Consensus 85 ~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~ 164 (530)
T 2ooe_A 85 YLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINI 164 (530)
T ss_dssp HHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTH
T ss_pred HHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhH
Confidence 66533 34677777765 66666543 5444 45677777776655 6889999999998854 22
Q ss_pred hhhHHHHHHHH-------------HhCCChhHHHHHHHHHH------HCC---CCCCH--------HHHHHHHHHHhc--
Q 046312 195 VVSWNVIITVC-------------VENLWLGEAVGYFVKMK------DLG---FEPDE--------TTMLVVLSACTE-- 242 (514)
Q Consensus 195 ~~~~~~li~~~-------------~~~~~~~~a~~~~~~m~------~~~---~~p~~--------~t~~~ll~~~~~-- 242 (514)
...|....... .+.+++..|..++.++. +.. ++|+. ..|...+.....
T Consensus 165 ~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~ 244 (530)
T 2ooe_A 165 EQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNP 244 (530)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCC
Confidence 12333322211 12345677777776632 111 24441 344444433222
Q ss_pred --cCCh----HHHHHHHHHHHHhCCCCchhHHHHHHHHHHh-------cCCHH-------HHHHHHHhcCc---C-CHHH
Q 046312 243 --LGNL----SLGKWVHLQLIERGTVLNCQLGTALIDMYAK-------CGAVG-------CARLLFSRMEE---I-NVWT 298 (514)
Q Consensus 243 --~g~~----~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~~-------~A~~~~~~~~~---~-~~~~ 298 (514)
.++. +.+..+|++.+... +.+..+|..++..+.+ .|+++ +|..+|++..+ | +...
T Consensus 245 ~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l 323 (530)
T 2ooe_A 245 LRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLL 323 (530)
T ss_dssp SCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHH
T ss_pred ccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHH
Confidence 1233 36778899888874 3467888888888875 79987 89999998874 3 5788
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCc-hHHHHHHHH
Q 046312 299 WSAMILGLAQHGYAEEALELFSNMKNSSISPN--YVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPM-RIHYHTMAD 375 (514)
Q Consensus 299 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~ 375 (514)
|..++..+.+.|++++|..+|+++++. .|+ ...|..++..+.+.|+++.|..+|++..+. .|+ ...|...+.
T Consensus 324 ~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~---~~~~~~~~~~~a~ 398 (530)
T 2ooe_A 324 YFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED---ARTRHHVYVTAAL 398 (530)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---TTCCTHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---cCCchHHHHHHHH
Confidence 999999999999999999999999984 554 247888888888999999999999999863 333 333333222
Q ss_pred H-HHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCc----hHHHHHHHHHh
Q 046312 376 I-LARAGHLKEAYTFIMNMP-FQP-NPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQ----NLVIVANKYAE 448 (514)
Q Consensus 376 ~-~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~----~~~~l~~~~~~ 448 (514)
. +...|+.++|..+|++.. ..| +...|..++..+...|+ .+.|..+++++....|.++. .|...+.....
T Consensus 399 ~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~---~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~ 475 (530)
T 2ooe_A 399 MEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNE---DNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESN 475 (530)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTC---HHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHH
T ss_pred HHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCC---HhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 2 346899999999999875 334 67889999999999999 99999999999998876655 67788888889
Q ss_pred cCCHHHHHHHHHHHHhCC
Q 046312 449 VGMWEKVSNVRRFMKNVG 466 (514)
Q Consensus 449 ~g~~~~A~~~~~~m~~~~ 466 (514)
.|+.+.+..+.+++.+..
T Consensus 476 ~G~~~~~~~~~~r~~~~~ 493 (530)
T 2ooe_A 476 IGDLASILKVEKRRFTAF 493 (530)
T ss_dssp SSCHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHHC
Confidence 999999999999887543
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.79 E-value=9.4e-17 Score=161.58 Aligned_cols=404 Identities=10% Similarity=0.008 Sum_probs=292.2
Q ss_pred CCCcccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHH
Q 046312 91 DSVPIPWNNLIRGYAWSDRPREAVWVFIDMKRRGIKPTEFTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNL 170 (514)
Q Consensus 91 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 170 (514)
+.+..+|..++.. .+.|++++|..+|+++.+. .+-+...|...+..+.+.|+++.|..+|++++.. .|+...|...
T Consensus 10 P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~ 85 (530)
T 2ooe_A 10 PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCY 85 (530)
T ss_dssp TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHH
T ss_pred CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHH
Confidence 3467789999984 7899999999999999886 3445567999999999999999999999999876 4677777777
Q ss_pred HHH-HHcCCCHHHHHH----HhhccC------CCChhhHHHHHHHHHh---------CCChhHHHHHHHHHHHCCCCCCH
Q 046312 171 VRF-YGSCRRKRDACK----VFDDMC------ERSVVSWNVIITVCVE---------NLWLGEAVGYFVKMKDLGFEPDE 230 (514)
Q Consensus 171 i~~-~~~~~~~~~A~~----~~~~~~------~~~~~~~~~li~~~~~---------~~~~~~a~~~~~~m~~~~~~p~~ 230 (514)
+.. ....|+.+.|.+ +|++.. ..+...|...+....+ .|+++.|..+|++..+....+..
T Consensus 86 ~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~ 165 (530)
T 2ooe_A 86 LSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIE 165 (530)
T ss_dssp HHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHH
T ss_pred HHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHH
Confidence 653 345677776655 665541 2356778888776655 68899999999999873111112
Q ss_pred HHHHHHHHH---H----------hccCChHHHHHHHHHHHH------hC---CCCc--------hhHHHHHHHHHHhc--
Q 046312 231 TTMLVVLSA---C----------TELGNLSLGKWVHLQLIE------RG---TVLN--------CQLGTALIDMYAKC-- 278 (514)
Q Consensus 231 ~t~~~ll~~---~----------~~~g~~~~a~~~~~~~~~------~~---~~~~--------~~~~~~li~~~~~~-- 278 (514)
..|...... + ...++++.|..+++.+.. .. +.|+ ...|...+......
T Consensus 166 ~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~ 245 (530)
T 2ooe_A 166 QLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPL 245 (530)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCc
Confidence 333322221 1 134456677766665321 11 2332 24555555433322
Q ss_pred --CCH----HHHHHHHHhcCc---CCHHHHHHHHHHHHH-------cCChH-------HHHHHHHHHHHCCCCCCHHHHH
Q 046312 279 --GAV----GCARLLFSRMEE---INVWTWSAMILGLAQ-------HGYAE-------EALELFSNMKNSSISPNYVTFL 335 (514)
Q Consensus 279 --g~~----~~A~~~~~~~~~---~~~~~~~~li~~~~~-------~~~~~-------~a~~~~~~m~~~g~~p~~~~~~ 335 (514)
++. .++..+|++... .+...|...+..+.+ .|+++ +|..+|++..+.-.+-+...+.
T Consensus 246 ~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~ 325 (530)
T 2ooe_A 246 RTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYF 325 (530)
T ss_dssp CCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHH
T ss_pred cCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHH
Confidence 232 467788888775 467888888888775 79987 8999999998632233477788
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHhhCCCCc--hHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC-HHHHHHHHHH-HH
Q 046312 336 GVLCACNHAGMVEDGYRYFHEMEHVHGIKPM--RIHYHTMADILARAGHLKEAYTFIMNMP-FQPN-PIVLRALLSA-SS 410 (514)
Q Consensus 336 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~-~~ 410 (514)
.++..+.+.|++++|..+|+++.+. .|+ ...|..++..+.+.|++++|.++|++.. ..|+ ...|...... +.
T Consensus 326 ~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~ 402 (530)
T 2ooe_A 326 AYADYEESRMKYEKVHSIYNRLLAI---EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYY 402 (530)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHS---SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHhCc---cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 8889999999999999999999863 554 2578889999999999999999999985 3332 2333222222 33
Q ss_pred hcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-C-CCceeEEEECCeEEEEEec
Q 046312 411 IHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNVGLK-K-MKGMSWVELGGSIHRFYSG 488 (514)
Q Consensus 411 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-~-~~~~~~~~~~~~~~~~~~~ 488 (514)
..|+ .+.|..+++.+.+..|+++..+..++..+.+.|+.++|..+|++....+.. | .....| ..++.-
T Consensus 403 ~~~~---~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw-------~~~~~~ 472 (530)
T 2ooe_A 403 CSKD---KSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIW-------ARFLAF 472 (530)
T ss_dssp HTCC---HHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHH-------HHHHHH
T ss_pred HcCC---hhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHH-------HHHHHH
Confidence 5888 999999999999999999999999999999999999999999999876532 2 122345 344555
Q ss_pred ccCCcChHHHHHHHHHHHHHhhh
Q 046312 489 YDSQVELAGIYQILETLNLHMKV 511 (514)
Q Consensus 489 ~~~~~~~~~a~~~~~~m~~~~~~ 511 (514)
...+|+.+.+..++.++.+..++
T Consensus 473 e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 473 ESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp HHHSSCHHHHHHHHHHHHHHTHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCch
Confidence 67789999999999998887763
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.3e-17 Score=159.44 Aligned_cols=261 Identities=11% Similarity=-0.096 Sum_probs=207.4
Q ss_pred ChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 046312 194 SVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALID 273 (514)
Q Consensus 194 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 273 (514)
+...|..+...+.+.|++++|...|+++.+.. +.+..++..+..++...|++++|...++++.+... .+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQP-NNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHH
Confidence 44567778888888888888888888888764 44677888888888888888888888888888753 35778888888
Q ss_pred HHHhcCCHHHHHHHHHhcCcCC-------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CCHHHHHHHHH
Q 046312 274 MYAKCGAVGCARLLFSRMEEIN-------------VWTWSAMILGLAQHGYAEEALELFSNMKNSSIS-PNYVTFLGVLC 339 (514)
Q Consensus 274 ~~~~~g~~~~A~~~~~~~~~~~-------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~~~~~~~ll~ 339 (514)
+|...|++++|...|+++.+.+ ...+..+...+...|++++|..+++++.+.... ++..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 8888888888888888876521 223344577889999999999999999986422 25788889999
Q ss_pred HHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCCCc
Q 046312 340 ACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP-FQP-NPIVLRALLSASSIHDAKYQ 417 (514)
Q Consensus 340 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~ 417 (514)
.+...|++++|...++++.+. .+.+..+|..+..+|.+.|++++|...|+++. ..| +..++..+...+...|+
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~--- 296 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGA--- 296 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC---
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCC---
Confidence 999999999999999999875 23457789999999999999999999999885 334 58889999999999999
Q ss_pred chHHHHHHHHHHhcCCC------------CCchHHHHHHHHHhcCCHHHHHHHHHH
Q 046312 418 DGVGNEVRRRLLELEPR------------GSQNLVIVANKYAEVGMWEKVSNVRRF 461 (514)
Q Consensus 418 ~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 461 (514)
+++|...++.+.++.|+ +...+..++.++...|+.+.+..+.++
T Consensus 297 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 297 YREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp CHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999999999998876 356788999999999999999888765
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.78 E-value=2.1e-17 Score=155.68 Aligned_cols=382 Identities=10% Similarity=0.035 Sum_probs=171.8
Q ss_pred hHHHHHHHhhcChhHHHHHHHHHHHhCCCCChHHHHHHHHhcccCCCCChHHHHHHHcccCCCCCcccHHHHHHHHHhCC
Q 046312 29 RQCLSFLKLCCSKKHLYQIHAQIQVSGLQNDAQILKELVRFCTLSSSKNLTYARSILCNYVNDSVPIPWNNLIRGYAWSD 108 (514)
Q Consensus 29 ~~~~~ll~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g 108 (514)
.....|+..+++++++.++.+.+ +++.+|..|..++. +.|++++|...|.+. +|+..|..++.++...|
T Consensus 7 ~a~~~ll~~~~~ld~A~~fae~~------~~~~vWs~La~A~l--~~g~~~eAIdsfika---~D~~~y~~V~~~ae~~g 75 (449)
T 1b89_A 7 SAVQVLIEHIGNLDRAYEFAERC------NEPAVWSQLAKAQL--QKGMVKEAIDSYIKA---DDPSSYMEVVQAANTSG 75 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHccCHHHHHHHHHhC------CChHHHHHHHHHHH--HcCCHHHHHHHHHcC---CCHHHHHHHHHHHHhCC
Confidence 34566788889999999999888 44569999999999 999999999999764 57789999999999999
Q ss_pred CchHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCHHHHHHHhh
Q 046312 109 RPREAVWVFIDMKRRGIKPTEFTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKRDACKVFD 188 (514)
Q Consensus 109 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~ 188 (514)
++++|+.+++..++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|.+++|..+|.
T Consensus 76 ~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~ 146 (449)
T 1b89_A 76 NWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYN 146 (449)
T ss_dssp -----------------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHH
T ss_pred CHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999988777664 4567789999999999999999998885 4777899999999999999999999999
Q ss_pred ccCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHH
Q 046312 189 DMCERSVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLG 268 (514)
Q Consensus 189 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 268 (514)
.+ ..|..++.++.+.|++++|.+.+.++ .+..+|..++.+|...|+++.|...... +...+.-.
T Consensus 147 ~a-----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l 210 (449)
T 1b89_A 147 NV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADEL 210 (449)
T ss_dssp HT-----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHH
T ss_pred Hh-----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhH
Confidence 87 48999999999999999999999988 3789999999999999999999654443 22344445
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCc---CCHHHHHHHHHHHHHc--CChHHHHHHHHHHHHCCCCC------CHHHHHHH
Q 046312 269 TALIDMYAKCGAVGCARLLFSRMEE---INVWTWSAMILGLAQH--GYAEEALELFSNMKNSSISP------NYVTFLGV 337 (514)
Q Consensus 269 ~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~--~~~~~a~~~~~~m~~~g~~p------~~~~~~~l 337 (514)
..++..|.+.|.+++|..+++.... .....|+-|.-+|++- ++..+.++.|..- -.++| +...|.-+
T Consensus 211 ~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~--ini~k~~~~~~~~~~w~e~ 288 (449)
T 1b89_A 211 EELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSR--VNIPKVLRAAEQAHLWAEL 288 (449)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT--SCHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHHHH
Confidence 5799999999999999999998875 4567788887777764 3444555554421 12223 24457777
Q ss_pred HHHHhccCcHHHHHHHHH-------------HHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHH
Q 046312 338 LCACNHAGMVEDGYRYFH-------------EMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMPFQPNPIVLRA 404 (514)
Q Consensus 338 l~~~~~~~~~~~a~~~~~-------------~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ 404 (514)
...|.+.++++.|....- ++..+ ..+...|-..+..|... .+..--.++.-+.-+-|. ..
T Consensus 289 ~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~k---v~n~elyYkai~fyl~~-~p~~l~~ll~~l~~~ld~---~r 361 (449)
T 1b89_A 289 VFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITK---VANVELYYRAIQFYLEF-KPLLLNDLLMVLSPRLDH---TR 361 (449)
T ss_dssp HHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHH---CSSTHHHHHHHHHHHHH-CGGGHHHHHHHHGGGCCH---HH
T ss_pred HHHHHhhchHHHHHHHHHhCChhhhhhHHHHHHHhc---hhHHHHHHHHHHHHHhc-CHHHHHHHHHHHHhccCc---HH
Confidence 777888888888765322 22211 33455565556555521 222222222222111121 22
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHH
Q 046312 405 LLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRR 460 (514)
Q Consensus 405 l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 460 (514)
.+.-+.+.|. +......+..+... ++..+-.+|-..|...++++.-+.-.+
T Consensus 362 ~v~~~~~~~~---l~l~~~yl~~v~~~--n~~~vnealn~l~ieeed~~~lr~si~ 412 (449)
T 1b89_A 362 AVNYFSKVKQ---LPLVKPYLRSVQNH--NNKSVNESLNNLFITEEDYQALRTSID 412 (449)
T ss_dssp HHHHHHHTTC---TTTTHHHHHHHHTT--CCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHcCC---cHHHHHHHHHHHHh--hHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 3344455555 55555555444432 222333466677777777665554444
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.6e-17 Score=158.86 Aligned_cols=260 Identities=10% Similarity=-0.025 Sum_probs=164.7
Q ss_pred chHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCHHHHHHHhhcc---CCCChhhHHHHHHHHH
Q 046312 130 FTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKRDACKVFDDM---CERSVVSWNVIITVCV 206 (514)
Q Consensus 130 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~li~~~~ 206 (514)
..+..+...+.+.|++++|...++++.+.. +.+..++..+..+|...|++++|...|++. .+.+..+|..+..+|.
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYT 144 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 345555555556666666666666655553 334555566666666666666666666555 2234556666666666
Q ss_pred hCCChhHHHHHHHHHHHCCCCCC-----------HHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCC-chhHHHHHHHH
Q 046312 207 ENLWLGEAVGYFVKMKDLGFEPD-----------ETTMLVVLSACTELGNLSLGKWVHLQLIERGTVL-NCQLGTALIDM 274 (514)
Q Consensus 207 ~~~~~~~a~~~~~~m~~~~~~p~-----------~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~ 274 (514)
..|++++|...|+++.+.. |+ ...+..+...+...|++++|...++++.+..... +..++..+...
T Consensus 145 ~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 222 (365)
T 4eqf_A 145 NTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVL 222 (365)
T ss_dssp HTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHH
Confidence 6777777777776666532 22 1223334666777777777777777777765331 56677777777
Q ss_pred HHhcCCHHHHHHHHHhcCc---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHH
Q 046312 275 YAKCGAVGCARLLFSRMEE---INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGY 351 (514)
Q Consensus 275 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~ 351 (514)
|...|++++|...|+++.+ .+..+|..+..+|...|++++|...|+++.+.. +.+..++..+..+|...|++++|.
T Consensus 223 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 301 (365)
T 4eqf_A 223 FHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAV 301 (365)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHH
Confidence 7777888888777777654 356777888888888888888888888877742 233667777778888888888888
Q ss_pred HHHHHHHHhhCCC----------CchHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 046312 352 RYFHEMEHVHGIK----------PMRIHYHTMADILARAGHLKEAYTFIMNM 393 (514)
Q Consensus 352 ~~~~~~~~~~~~~----------p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 393 (514)
..|+++.+...-. .+...|..+..++...|+.+.+..+..+-
T Consensus 302 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 353 (365)
T 4eqf_A 302 SNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGD 353 (365)
T ss_dssp HHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTC
T ss_pred HHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhh
Confidence 8888877642110 12566777888888888888888777654
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=4.1e-16 Score=154.59 Aligned_cols=366 Identities=9% Similarity=-0.033 Sum_probs=215.9
Q ss_pred ccHHHHHHHHHhCCCchHHHHHHHHHHHc-----C--CCCC-cchHHHHHHHHhccCCchHHHHHHHHHHHhC------C
Q 046312 95 IPWNNLIRGYAWSDRPREAVWVFIDMKRR-----G--IKPT-EFTYPFVLKACAEISGLNEGMQVQANVTKSG------L 160 (514)
Q Consensus 95 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~--~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------~ 160 (514)
..||.+...+...|++++|++.|++..+. + ..|+ ..+|..+..+|...|++++|...+++..+.. .
T Consensus 52 ~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~ 131 (472)
T 4g1t_A 52 TMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPY 131 (472)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSS
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccccc
Confidence 45777777777777777777777765431 1 1222 2456777777777777777777777665431 0
Q ss_pred CC-CcchHHHHHHHHHc--CCCHHHHHHHhhccC---CCChhhHHHHHHH---HHhCCChhHHHHHHHHHHHCCCCCCHH
Q 046312 161 DS-DVYTNNNLVRFYGS--CRRKRDACKVFDDMC---ERSVVSWNVIITV---CVENLWLGEAVGYFVKMKDLGFEPDET 231 (514)
Q Consensus 161 ~~-~~~~~~~li~~~~~--~~~~~~A~~~~~~~~---~~~~~~~~~li~~---~~~~~~~~~a~~~~~~m~~~~~~p~~~ 231 (514)
.+ ...++..+..++.. .+++++|...|++.. +.+...+..+..+ +...++.++|++.+++..+.. +.+..
T Consensus 132 ~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~ 210 (472)
T 4g1t_A 132 RIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQY 210 (472)
T ss_dssp CCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHH
T ss_pred chhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchH
Confidence 11 12344444444433 345777777777762 2234444444333 344566777777777776653 23444
Q ss_pred HHHHHHHHHh----ccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCc--C-CHHHHHHHHH
Q 046312 232 TMLVVLSACT----ELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEE--I-NVWTWSAMIL 304 (514)
Q Consensus 232 t~~~ll~~~~----~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~ 304 (514)
.+..+...+. ..|+.++|...+++...... .+..++..+...|...|++++|...|++..+ | +..++..+..
T Consensus 211 ~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 289 (472)
T 4g1t_A 211 LKVLLALKLHKMREEGEEEGEGEKLVEEALEKAP-GVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGC 289 (472)
T ss_dssp HHHHHHHHHHHCC------CHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHH
Confidence 4444444433 33566777777777776653 3566677777778888888888887777664 2 3445555544
Q ss_pred HHHH-------------------cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCC
Q 046312 305 GLAQ-------------------HGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKP 365 (514)
Q Consensus 305 ~~~~-------------------~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p 365 (514)
.|.. .+..++|...+++..+.. +.+..++..+...+...|++++|...|++..+. ...+
T Consensus 290 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~-~~~~ 367 (472)
T 4g1t_A 290 CYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSK-ELTP 367 (472)
T ss_dssp HHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS-CCCH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc-CCCC
Confidence 4432 234577888888877643 334556778888999999999999999999864 3332
Q ss_pred ch--HHHHHHHH-HHHhcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHH
Q 046312 366 MR--IHYHTMAD-ILARAGHLKEAYTFIMNMP-FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVI 441 (514)
Q Consensus 366 ~~--~~~~~li~-~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 441 (514)
.. ..+..+.. .+...|+.++|+..|++.. +.|+....... .+.+.++++...+.+|+++.+|..
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~------------~~~l~~~~~~~l~~~p~~~~~~~~ 435 (472)
T 4g1t_A 368 VAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKM------------KDKLQKIAKMRLSKNGADSEALHV 435 (472)
T ss_dssp HHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHH------------HHHHHHHHHHHHHHCC-CTTHHHH
T ss_pred hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHH------------HHHHHHHHHHHHHhCCCCHHHHHH
Confidence 21 12333333 2346899999999998875 66665433222 344677778888899999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCCceeEE
Q 046312 442 VANKYAEVGMWEKVSNVRRFMKNVGLKKMKGMSWV 476 (514)
Q Consensus 442 l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 476 (514)
|+.+|...|++++|.+.|++..+.+-..+.+.+|+
T Consensus 436 LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 436 LAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HHHHHHHHHHCC-----------------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 99999999999999999999998776655666663
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.77 E-value=8.8e-16 Score=141.30 Aligned_cols=271 Identities=10% Similarity=-0.010 Sum_probs=212.4
Q ss_pred HHHHcCCCHHHHHHHhhccCCCCh----hhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChH
Q 046312 172 RFYGSCRRKRDACKVFDDMCERSV----VSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLS 247 (514)
Q Consensus 172 ~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~ 247 (514)
+-....|+++.|...++.....+. .....+.++|...|+++.|+..++. .-.|+..++..+...+...++.+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHH
Confidence 345567888888888877644332 3445667888999999988876654 23567778888888888999999
Q ss_pred HHHHHHHHHHHhCCCC-chhHHHHHHHHHHhcCCHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 046312 248 LGKWVHLQLIERGTVL-NCQLGTALIDMYAKCGAVGCARLLFSRMEEINVWTWSAMILGLAQHGYAEEALELFSNMKNSS 326 (514)
Q Consensus 248 ~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 326 (514)
+|.+.++++...+..| +...+..+...|...|++++|++.+++ ..+...+..++..+.+.|++++|...++++.+..
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 160 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD 160 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC
Confidence 9999999988876544 456677777899999999999999998 5678899999999999999999999999999863
Q ss_pred CCCCHHHH---HHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHH
Q 046312 327 ISPNYVTF---LGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP-FQP-NPIV 401 (514)
Q Consensus 327 ~~p~~~~~---~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~ 401 (514)
|+.... ...+..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|.+.|+++. ..| +..+
T Consensus 161 --p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 236 (291)
T 3mkr_A 161 --EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPET 236 (291)
T ss_dssp --TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred --cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 553321 22334445669999999999999985 35568889999999999999999999999975 334 6788
Q ss_pred HHHHHHHHHhcCCCCcchH-HHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHH
Q 046312 402 LRALLSASSIHDAKYQDGV-GNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVR 459 (514)
Q Consensus 402 ~~~l~~~~~~~~~~~~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 459 (514)
+..++..+...|+ .++ +.+.++++.+.+|+++. +.+...+.+.++++..-|
T Consensus 237 l~~l~~~~~~~g~---~~eaa~~~~~~~~~~~P~~~~----~~d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 237 LINLVVLSQHLGK---PPEVTNRYLSQLKDAHRSHPF----IKEYRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHHHHTTC---CHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCC---CHHHHHHHHHHHHHhCCCChH----HHHHHHHHHHHHHHHHHc
Confidence 9999999999999 765 67899999999999874 334555666666665443
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.75 E-value=5.6e-16 Score=145.40 Aligned_cols=273 Identities=10% Similarity=-0.025 Sum_probs=170.6
Q ss_pred ccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHH
Q 046312 95 IPWNNLIRGYAWSDRPREAVWVFIDMKRRGIKPTEFTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFY 174 (514)
Q Consensus 95 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 174 (514)
..|..+...+...|++++|+.+|+++.+.. +.+...+..+..++...|++++|.+.++++.+.. +.+..++..+...|
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 99 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHH
Confidence 345555666666666666666666665542 2244455555666666666666666666665553 22344444555555
Q ss_pred HcCCCHHHHHHHhhccCC--C-ChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHH-HH-HHhccCChHHH
Q 046312 175 GSCRRKRDACKVFDDMCE--R-SVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVV-LS-ACTELGNLSLG 249 (514)
Q Consensus 175 ~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~l-l~-~~~~~g~~~~a 249 (514)
...|++++|.+.++++.. | +...+..+... .|+......+ .. .+...|++++|
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~A 157 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQYEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEYREC 157 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTTTC------------------------------------------CCTTSHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccHHHH
Confidence 555555555555544411 1 11111111000 0001111111 11 25667777888
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCc---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 046312 250 KWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEE---INVWTWSAMILGLAQHGYAEEALELFSNMKNSS 326 (514)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 326 (514)
...++.+.+.... +..++..+...|...|++++|...++++.+ .+...|..+...+...|++++|...++++.+..
T Consensus 158 ~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 236 (327)
T 3cv0_A 158 RTLLHAALEMNPN-DAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN 236 (327)
T ss_dssp HHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 8888877776533 567777778888888888888888877654 356778888888888999999999998887753
Q ss_pred CCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCC-----------chHHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 046312 327 ISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKP-----------MRIHYHTMADILARAGHLKEAYTFIMNMP 394 (514)
Q Consensus 327 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-----------~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 394 (514)
+.+..++..+..++...|++++|...++++.+.. -.. +...+..+..++.+.|+.++|..++++..
T Consensus 237 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 237 -PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQ-VGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred -CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 3356778888888889999999999998887652 111 46678888889999999999999887664
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.74 E-value=1.9e-16 Score=148.63 Aligned_cols=257 Identities=9% Similarity=-0.137 Sum_probs=172.9
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 046312 198 WNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAK 277 (514)
Q Consensus 198 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 277 (514)
+..+...+...|++++|..+|+++.+.. +.+...+..+..++...|++++|...++.+.+.. +.+..++..+...|..
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 101 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHH
Confidence 3334444444444444444444444432 2233444444444444555555555555444443 1234444444555555
Q ss_pred cCCHHHHHHHHHhcCc--C-CHHHHHH-------------H-HH-HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 046312 278 CGAVGCARLLFSRMEE--I-NVWTWSA-------------M-IL-GLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLC 339 (514)
Q Consensus 278 ~g~~~~A~~~~~~~~~--~-~~~~~~~-------------l-i~-~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 339 (514)
.|++++|.+.++++.+ | +...+.. + .. .+...|++++|..+++++.+.. +.+...+..+..
T Consensus 102 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 180 (327)
T 3cv0_A 102 EHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGV 180 (327)
T ss_dssp TTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 5555555555544432 1 1111111 1 22 3667788999999999988753 336778888888
Q ss_pred HHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCCCc
Q 046312 340 ACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP--FQPNPIVLRALLSASSIHDAKYQ 417 (514)
Q Consensus 340 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~ 417 (514)
.+...|++++|..+++++.+. .+.+...+..+...+.+.|++++|...++++. .+.+...+..+...+...|+
T Consensus 181 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~--- 255 (327)
T 3cv0_A 181 LYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQ--- 255 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---
T ss_pred HHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcc---
Confidence 999999999999999998875 13346788889999999999999999998875 34467888999999999999
Q ss_pred chHHHHHHHHHHhcCCC------------CCchHHHHHHHHHhcCCHHHHHHHHHHH
Q 046312 418 DGVGNEVRRRLLELEPR------------GSQNLVIVANKYAEVGMWEKVSNVRRFM 462 (514)
Q Consensus 418 ~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~m 462 (514)
+++|.+.++.+.+..|+ +...+..++.+|.+.|++++|..++++.
T Consensus 256 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 256 YDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 99999999999999988 6778889999999999999999998754
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.74 E-value=1.5e-14 Score=151.63 Aligned_cols=382 Identities=12% Similarity=0.032 Sum_probs=285.1
Q ss_pred CChHHHHHHHHhcccCCCCChHHHHHHHcccCCCCC-----cccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchH
Q 046312 58 NDAQILKELVRFCTLSSSKNLTYARSILCNYVNDSV-----PIPWNNLIRGYAWSDRPREAVWVFIDMKRRGIKPTEFTY 132 (514)
Q Consensus 58 ~~~~~~~~ll~~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 132 (514)
.++.--...++.|. ..|.+.+|.+++++....++ ...-+.++....+. +..+..++.++.... ..
T Consensus 983 ~~PeeVs~~vKaf~--~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~-------d~ 1052 (1630)
T 1xi4_A 983 QDPEEVSVTVKAFM--TADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY-------DA 1052 (1630)
T ss_pred cCHHHhHHHHHHHH--hCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc-------cH
Confidence 34555567788888 88999999999988753333 24456666666666 556666666655421 13
Q ss_pred HHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCHHHHHHHhhccCCCChhhHHHHHHHHHhCCChh
Q 046312 133 PFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKRDACKVFDDMCERSVVSWNVIITVCVENLWLG 212 (514)
Q Consensus 133 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 212 (514)
.-+...+...|.+++|..+|++.. -.....+.+ +-..+++++|.++.+++. +..+|..+..++...|+++
T Consensus 1053 ~eIA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VL---ie~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~k 1122 (1630)
T 1xi4_A 1053 PDIANIAISNELFEEAFAIFRKFD-----VNTSAVQVL---IEHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVK 1122 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHH---HHHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHH
Confidence 446778888999999999998752 111112222 237788999999998773 4678889999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 046312 213 EAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRME 292 (514)
Q Consensus 213 ~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 292 (514)
+|+..|.+. -|...|..++.+|.+.|++++|.+++...++.. ++..+.+.++.+|++.+++++...+. .
T Consensus 1123 EAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~ 1191 (1630)
T 1xi4_A 1123 EAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---N 1191 (1630)
T ss_pred HHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---h
Confidence 999999663 467788889999999999999999999887765 34444456999999999988655443 4
Q ss_pred cCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHH
Q 046312 293 EINVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHT 372 (514)
Q Consensus 293 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ 372 (514)
.++...|..+...|...|++++|..+|... ..|..+..++.+.|+++.|.+.+++.. +..+|..
T Consensus 1192 ~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~-------n~~aWke 1255 (1630)
T 1xi4_A 1192 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN-------STRTWKE 1255 (1630)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC-------CHHHHHH
Confidence 567777778899999999999999999884 378899999999999999999888763 3578888
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhc--C
Q 046312 373 MADILARAGHLKEAYTFIMNMPFQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEV--G 450 (514)
Q Consensus 373 li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~--g 450 (514)
+..+|...|++..|......+. .+...+..++..|...|. ++++.+.++....++|.....|.-|+.+|.+- +
T Consensus 1256 v~~acve~~Ef~LA~~cgl~Ii--v~~deLeeli~yYe~~G~---feEAI~LlE~aL~LeraH~gmftELaiLyaKy~pe 1330 (1630)
T 1xi4_A 1256 VCFACVDGKEFRLAQMCGLHIV--VHADELEELINYYQDRGY---FEELITMLEAALGLERAHMGMFTELAILYSKFKPQ 1330 (1630)
T ss_pred HHHHHhhhhHHHHHHHHHHhhh--cCHHHHHHHHHHHHHcCC---HHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHH
Confidence 8888999999999988777644 455666688999999999 99999999999999988888888788877764 4
Q ss_pred CHHHHHHHHHHHHhCCCCC-----CCceeEEEECCeEEEEEecccCCcChHHHHH
Q 046312 451 MWEKVSNVRRFMKNVGLKK-----MKGMSWVELGGSIHRFYSGYDSQVELAGIYQ 500 (514)
Q Consensus 451 ~~~~A~~~~~~m~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 500 (514)
+..++.++|.. +.++++ ....-| ..++.-|.+.|+++.|..
T Consensus 1331 klmEhlk~f~~--rini~k~~r~~e~~~lW-------~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1331 KMREHLELFWS--RVNIPKVLRAAEQAHLW-------AELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHHHHHHHHH--hcccchHhHHHHHHHHH-------HHHHHHHHhcccHHHHHH
Confidence 44455555442 233433 333446 455566777788887774
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.72 E-value=7.1e-16 Score=141.94 Aligned_cols=248 Identities=9% Similarity=0.015 Sum_probs=205.0
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 046312 202 ITVCVENLWLGEAVGYFVKMKDLGFEPDE--TTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCG 279 (514)
Q Consensus 202 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 279 (514)
|+-....|+++.|+..+++.... .|+. .....+..++...|+++.|...++. .-.|+..++..+...+...|
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 34566789999999988776443 4443 3556678999999999999976654 24567888899999999999
Q ss_pred CHHHHHHHHHhcCc----C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 046312 280 AVGCARLLFSRMEE----I-NVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYF 354 (514)
Q Consensus 280 ~~~~A~~~~~~~~~----~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 354 (514)
+.++|++.++++.. | +...+..+...+...|++++|+..+++ +.+...+..+...+.+.|++++|...+
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999998742 4 566777888999999999999999987 467788889999999999999999999
Q ss_pred HHHHHhhCCCCchHHH---HHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHH
Q 046312 355 HEMEHVHGIKPMRIHY---HTMADILARAGHLKEAYTFIMNMP--FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLL 429 (514)
Q Consensus 355 ~~~~~~~~~~p~~~~~---~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~ 429 (514)
+++.+. .|+.... ..++..+...|++++|..+|+++. .+.+...++.+..++...|+ +++|.+.++++.
T Consensus 154 ~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~---~~eA~~~l~~al 227 (291)
T 3mkr_A 154 KKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGR---WEAAEGVLQEAL 227 (291)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHH
T ss_pred HHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC---HHHHHHHHHHHH
Confidence 999975 4664322 223344455699999999999986 55678999999999999999 999999999999
Q ss_pred hcCCCCCchHHHHHHHHHhcCCHHH-HHHHHHHHHhCCC
Q 046312 430 ELEPRGSQNLVIVANKYAEVGMWEK-VSNVRRFMKNVGL 467 (514)
Q Consensus 430 ~~~p~~~~~~~~l~~~~~~~g~~~~-A~~~~~~m~~~~~ 467 (514)
+.+|+++.++..++.++...|+.++ +.++++++.+...
T Consensus 228 ~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P 266 (291)
T 3mkr_A 228 DKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHR 266 (291)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT
T ss_pred HhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999976 6789999887553
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.72 E-value=7.4e-14 Score=146.51 Aligned_cols=377 Identities=10% Similarity=0.023 Sum_probs=283.4
Q ss_pred hhhHHHHHHHhhcChhHHHHHHHHHHHhC--CCCChHHHHHHHHhcccCCCCChHHHHHHHcccCCCCCcccHHHHHHHH
Q 046312 27 KARQCLSFLKLCCSKKHLYQIHAQIQVSG--LQNDAQILKELVRFCTLSSSKNLTYARSILCNYVNDSVPIPWNNLIRGY 104 (514)
Q Consensus 27 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~~ll~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~ 104 (514)
.++..+..+...+.+.++..+++...-.+ +.-+....+.|+..-. +. +......+.++.. .-+ ...+...+
T Consensus 987 eVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAI--ka-D~~Rv~eyI~kLd-~~d---~~eIA~Ia 1059 (1630)
T 1xi4_A 987 EVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAI--KA-DRTRVMEYINRLD-NYD---APDIANIA 1059 (1630)
T ss_pred HhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHH--Hh-ChhhHHHHHHHhh-hcc---HHHHHHHH
Confidence 33444455556678888888888887332 2345577777777666 33 4444444444443 222 45577888
Q ss_pred HhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHh-ccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCHHHH
Q 046312 105 AWSDRPREAVWVFIDMKRRGIKPTEFTYPFVLKACA-EISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKRDA 183 (514)
Q Consensus 105 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A 183 (514)
...|.+++|..+|++.. .+...+..+. ..+++++|.++.++. -++.+|..+..++.+.|++++|
T Consensus 1060 i~lglyEEAf~IYkKa~---------~~~~A~~VLie~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEA 1124 (1630)
T 1xi4_A 1060 ISNELFEEAFAIFRKFD---------VNTSAVQVLIEHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEA 1124 (1630)
T ss_pred HhCCCHHHHHHHHHHcC---------CHHHHHHHHHHHHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHH
Confidence 89999999999999852 1222223333 778999999998855 2478899999999999999999
Q ss_pred HHHhhccCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCC
Q 046312 184 CKVFDDMCERSVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVL 263 (514)
Q Consensus 184 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 263 (514)
.+.|.+. .|...|..++.++.+.|++++|.++|...++.. ++....+.++.+|++.++++....+. + .+
T Consensus 1125 IdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~ 1193 (1630)
T 1xi4_A 1125 IDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GP 1193 (1630)
T ss_pred HHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CC
Confidence 9999775 678889999999999999999999999888764 34333445899999999988655443 2 34
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 046312 264 NCQLGTALIDMYAKCGAVGCARLLFSRMEEINVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNH 343 (514)
Q Consensus 264 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 343 (514)
+...+..+.+.|...|++++|..+|... ..|..+..+|++.|++++|.+.+++. .+..+|..+-.+|..
T Consensus 1194 n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve 1262 (1630)
T 1xi4_A 1194 NNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVD 1262 (1630)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhh
Confidence 5667778999999999999999999996 48999999999999999999999986 356889999999999
Q ss_pred cCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCCCcchHH
Q 046312 344 AGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP-FQP-NPIVLRALLSASSIHDAKYQDGVG 421 (514)
Q Consensus 344 ~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~~~~a 421 (514)
.|++..|...... +..+...+..++..|.+.|.+++|+.+++... ..| ....|.-|...+.+.. .++.
T Consensus 1263 ~~Ef~LA~~cgl~------Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~----pekl 1332 (1630)
T 1xi4_A 1263 GKEFRLAQMCGLH------IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK----PQKM 1332 (1630)
T ss_pred hhHHHHHHHHHHh------hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCC----HHHH
Confidence 9999999876543 23456677799999999999999999998875 333 3455656666666643 3444
Q ss_pred HHHHHHHHh---cCC-----CCCchHHHHHHHHHhcCCHHHHHH
Q 046312 422 NEVRRRLLE---LEP-----RGSQNLVIVANKYAEVGMWEKVSN 457 (514)
Q Consensus 422 ~~~~~~~~~---~~p-----~~~~~~~~l~~~~~~~g~~~~A~~ 457 (514)
.+.++...+ +.| .+...|..++..|.+.|.++.|..
T Consensus 1333 mEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1333 REHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 444444433 222 456679999999999999999983
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=3.7e-15 Score=147.65 Aligned_cols=367 Identities=10% Similarity=-0.067 Sum_probs=238.1
Q ss_pred CCChHHHHHHHHhcccCCCCChHHHHHHHcccCC-----------CCCcccHHHHHHHHHhCCCchHHHHHHHHHHHc--
Q 046312 57 QNDAQILKELVRFCTLSSSKNLTYARSILCNYVN-----------DSVPIPWNNLIRGYAWSDRPREAVWVFIDMKRR-- 123 (514)
Q Consensus 57 ~~~~~~~~~ll~~~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-- 123 (514)
......||.|-..+. ..|++++|++.|++... .....+|+.+..+|...|++++|...+++..+.
T Consensus 48 ~~~a~~yn~Lg~~~~--~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~ 125 (472)
T 4g1t_A 48 EFKATMCNLLAYLKH--LKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCE 125 (472)
T ss_dssp --CCHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhH
Confidence 344678998988888 89999999999976421 223467999999999999999999999887542
Q ss_pred --C--CCCC-cchHHHHHHHHhc--cCCchHHHHHHHHHHHhCCCCCcchHHHHHHH---HHcCCCHHHHHHHhhcc---
Q 046312 124 --G--IKPT-EFTYPFVLKACAE--ISGLNEGMQVQANVTKSGLDSDVYTNNNLVRF---YGSCRRKRDACKVFDDM--- 190 (514)
Q Consensus 124 --~--~~p~-~~~~~~ll~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~---~~~~~~~~~A~~~~~~~--- 190 (514)
. ..++ ..++.....++.. .+++++|...|++..+.. +-++..+..+..+ +...++.++|.+.+++.
T Consensus 126 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l 204 (472)
T 4g1t_A 126 KFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL 204 (472)
T ss_dssp HSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHH
T ss_pred hcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhc
Confidence 1 1112 2345555445544 457899999999999874 3345555555544 34567778888888776
Q ss_pred CCCChhhHHHHHHHHHh----CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchh
Q 046312 191 CERSVVSWNVIITVCVE----NLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQ 266 (514)
Q Consensus 191 ~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 266 (514)
.+.+..++..+...+.. .|++++|.+.+++..... +.+...+..+...+...|++++|...++...+..+. +..
T Consensus 205 ~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~ 282 (472)
T 4g1t_A 205 NPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAY 282 (472)
T ss_dssp CSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHH
T ss_pred CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHH
Confidence 33456666666555544 467889999999988764 456778889999999999999999999999987643 566
Q ss_pred HHHHHHHHHHhc-------------------CCHHHHHHHHHhcCc---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 046312 267 LGTALIDMYAKC-------------------GAVGCARLLFSRMEE---INVWTWSAMILGLAQHGYAEEALELFSNMKN 324 (514)
Q Consensus 267 ~~~~li~~~~~~-------------------g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 324 (514)
++..+..+|... +..+.|...|++..+ .+...+..+...|...|++++|...|++.++
T Consensus 283 ~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~ 362 (472)
T 4g1t_A 283 LHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFS 362 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHh
Confidence 666666665432 235667777776654 3456788899999999999999999999998
Q ss_pred CCCCCCHH--HHHHHHH-HHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCH
Q 046312 325 SSISPNYV--TFLGVLC-ACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP--FQPNP 399 (514)
Q Consensus 325 ~g~~p~~~--~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~ 399 (514)
....+... .+..+.. .....|+.++|...|++..+ +.|+.......+ +.+..++++.. .+.+.
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~~~~~~~---------~~l~~~~~~~l~~~p~~~ 430 (472)
T 4g1t_A 363 KELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSREKEKMK---------DKLQKIAKMRLSKNGADS 430 (472)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCHHHHHHH---------HHHHHHHHHHHHHCC-CT
T ss_pred cCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHHHHHH---------HHHHHHHHHHHHhCCCCH
Confidence 64433321 2222222 34567999999999999885 366644332222 23334444332 33467
Q ss_pred HHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHH
Q 046312 400 IVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVA 443 (514)
Q Consensus 400 ~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 443 (514)
.+|..+...+...|+ +++|.+.++++.+++|.+|.+...++
T Consensus 431 ~~~~~LG~~~~~~g~---~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 431 EALHVLAFLQELNEK---MQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp THHHHHHHHHHHHHH---CC------------------------
T ss_pred HHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 889999999999999 99999999999999998887665544
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.8e-17 Score=168.26 Aligned_cols=123 Identities=11% Similarity=0.019 Sum_probs=100.2
Q ss_pred cchHHHHHHHHHcCCCHHHHHHHhhcc-------CCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 046312 164 VYTNNNLVRFYGSCRRKRDACKVFDDM-------CERSVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVV 236 (514)
Q Consensus 164 ~~~~~~li~~~~~~~~~~~A~~~~~~~-------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~l 236 (514)
..+||+||++|++.|++++|.++|++| ..||+.+||+||++|++.|++++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 457888888888888888888888665 4678888888888888888888898999999888889999999999
Q ss_pred HHHHhccCCh-HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 046312 237 LSACTELGNL-SLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARL 286 (514)
Q Consensus 237 l~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 286 (514)
|.++++.|+. +.|.+++++|.+.|+.||..+|++++....+.+-++.+.+
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrk 257 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHK 257 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGG
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHH
Confidence 9988888874 6788889999988988998888888876665544433333
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=3.7e-17 Score=166.05 Aligned_cols=151 Identities=15% Similarity=0.152 Sum_probs=117.5
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhcC-------cCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH
Q 046312 262 VLNCQLGTALIDMYAKCGAVGCARLLFSRME-------EINVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTF 334 (514)
Q Consensus 262 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 334 (514)
..-..+|++||++|++.|++++|.++|++|. .||+.+||+||.+||+.|++++|.++|++|.+.|+.||..||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 3345678888888888888888888886653 389999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCc-HHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCCC----CCCHHHHHHHHHHH
Q 046312 335 LGVLCACNHAGM-VEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMPF----QPNPIVLRALLSAS 409 (514)
Q Consensus 335 ~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~p~~~~~~~l~~~~ 409 (514)
+++|.++++.|+ .+.|.++|++|.++ |+.||..+|++++....+.+-++.+.++..++.. .|...+...|.+.|
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~ 282 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVY 282 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHH
Confidence 999999999997 57899999999997 9999999999999877765444444333333221 11234444455555
Q ss_pred HhcC
Q 046312 410 SIHD 413 (514)
Q Consensus 410 ~~~~ 413 (514)
.+.+
T Consensus 283 s~d~ 286 (1134)
T 3spa_A 283 AKDG 286 (1134)
T ss_dssp CCCS
T ss_pred ccCC
Confidence 5444
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.65 E-value=3.7e-14 Score=127.95 Aligned_cols=217 Identities=7% Similarity=-0.093 Sum_probs=151.3
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCc--C----C----HHHHHHH
Q 046312 233 MLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEE--I----N----VWTWSAM 302 (514)
Q Consensus 233 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~----~----~~~~~~l 302 (514)
+..+...+...|++++|...++.+.+.. .+..++..+..+|...|++++|...|++..+ | + ...|..+
T Consensus 8 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l 85 (258)
T 3uq3_A 8 EKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARI 85 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence 3444444444455555555555544444 3444555555555555555555555555443 1 1 4566777
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCC-chHHHHHHHHHHHhcC
Q 046312 303 ILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKP-MRIHYHTMADILARAG 381 (514)
Q Consensus 303 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g 381 (514)
...+...|++++|...|+++.+. .|+. ..+...|++++|...++.+... .| +...+..+...+...|
T Consensus 86 ~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 86 GNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYV---NPEKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHc---CcchHHHHHHHHHHHHHhc
Confidence 77778888888888888887763 3442 2355667788888888888753 34 3567777888888888
Q ss_pred CHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHH
Q 046312 382 HLKEAYTFIMNMP--FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVR 459 (514)
Q Consensus 382 ~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 459 (514)
++++|...++++. .+.+...+..+...+...|+ ++.|...++.+.+..|+++.++..++.+|.+.|++++|...+
T Consensus 154 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 230 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMS---FPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETL 230 (258)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 8888888888875 34467788888888888888 889999999998888888888888999999999999999998
Q ss_pred HHHHhCC
Q 046312 460 RFMKNVG 466 (514)
Q Consensus 460 ~~m~~~~ 466 (514)
++..+..
T Consensus 231 ~~a~~~~ 237 (258)
T 3uq3_A 231 DAARTKD 237 (258)
T ss_dssp HHHHHHH
T ss_pred HHHHHhC
Confidence 8876543
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.5e-14 Score=130.58 Aligned_cols=233 Identities=12% Similarity=-0.066 Sum_probs=156.1
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCC--c----hhHHH
Q 046312 196 VSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVL--N----CQLGT 269 (514)
Q Consensus 196 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~--~----~~~~~ 269 (514)
..|..+...+...|++++|...|++..+.. .+...+..+..++...|++++|...++.+.+..... + ..++.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 345566666677777777777777776665 556666667777777777777777777666543211 1 45666
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCc--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcH
Q 046312 270 ALIDMYAKCGAVGCARLLFSRMEE--INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMV 347 (514)
Q Consensus 270 ~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 347 (514)
.+...|...|++++|...|++..+ ++. ..+...|++++|...++++.... +.+...+..+...+...|++
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 155 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEHRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDW 155 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCH
Confidence 777777777777777777776654 332 33555677777777777777642 22345566677777777888
Q ss_pred HHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCCCcchHHHHHH
Q 046312 348 EDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP--FQPNPIVLRALLSASSIHDAKYQDGVGNEVR 425 (514)
Q Consensus 348 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~ 425 (514)
++|...++++.+.. +.+...+..+...+.+.|++++|...++++. .+.+...+..+...+...|+ .+.|...+
T Consensus 156 ~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~ 230 (258)
T 3uq3_A 156 PNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKE---YASALETL 230 (258)
T ss_dssp HHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHH
T ss_pred HHHHHHHHHHHhcC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhh---HHHHHHHH
Confidence 88888888777641 3346667777777888888888888887764 33346777777778888888 88888888
Q ss_pred HHHHhcC------CCCCchHHHHH
Q 046312 426 RRLLELE------PRGSQNLVIVA 443 (514)
Q Consensus 426 ~~~~~~~------p~~~~~~~~l~ 443 (514)
+.+.++. |++...+..+.
T Consensus 231 ~~a~~~~~~~~~~p~~~~~~~~l~ 254 (258)
T 3uq3_A 231 DAARTKDAEVNNGSSAREIDQLYY 254 (258)
T ss_dssp HHHHHHHHHHHTTTTHHHHHHHHH
T ss_pred HHHHHhChhhcCCCchHHHHHHHH
Confidence 8887777 65554444443
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.62 E-value=4e-14 Score=124.33 Aligned_cols=194 Identities=15% Similarity=0.022 Sum_probs=151.9
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCc---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 046312 262 VLNCQLGTALIDMYAKCGAVGCARLLFSRMEE---INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVL 338 (514)
Q Consensus 262 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll 338 (514)
+++...+..+...+.+.|++++|...|++..+ .+...|..+...+.+.|++++|+..+++..+.. +.+...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 34566777778888888888888888887764 356788888888889999999999999888753 23456777788
Q ss_pred HHHhcc-----------CcHHHHHHHHHHHHHhhCCCCc-hHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHH
Q 046312 339 CACNHA-----------GMVEDGYRYFHEMEHVHGIKPM-RIHYHTMADILARAGHLKEAYTFIMNMP--FQPNPIVLRA 404 (514)
Q Consensus 339 ~~~~~~-----------~~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ 404 (514)
.++... |++++|...+++..+. .|+ ...+..+...+...|++++|.+.|+++. . .+...+..
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~ 156 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERV---NPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHH
Confidence 888888 9999999999999875 554 6778889999999999999999999885 5 78889999
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 046312 405 LLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMK 463 (514)
Q Consensus 405 l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 463 (514)
+...+...|+ +++|...++.+.+.+|+++.++..++.++.+.|++++|.+.+++..
T Consensus 157 la~~~~~~g~---~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 157 LAELYLSMGR---LDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHTC---HHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHcCC---HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9999999999 9999999999999999999999999999999999999999998764
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.59 E-value=1e-13 Score=126.37 Aligned_cols=241 Identities=7% Similarity=-0.114 Sum_probs=178.7
Q ss_pred hCCChhHHHHHHHHHHHCCCC---CCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH
Q 046312 207 ENLWLGEAVGYFVKMKDLGFE---PDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGC 283 (514)
Q Consensus 207 ~~~~~~~a~~~~~~m~~~~~~---p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 283 (514)
..|++++|+..|+++.+.... .+..++..+...+...|++++|...++.+.+... .+..++..+...|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHccCHHH
Confidence 346777888888887765321 1345667777777888888888888888877653 356777888888888888888
Q ss_pred HHHHHHhcCc---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHh
Q 046312 284 ARLLFSRMEE---INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHV 360 (514)
Q Consensus 284 A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 360 (514)
|...|+++.+ .+...+..+...+...|++++|...++++.+. .|+.......+..+...|++++|...+++....
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 8888887764 35678888888999999999999999998874 455444444555566779999999999888764
Q ss_pred hCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC-----HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCC
Q 046312 361 HGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP-FQPN-----PIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPR 434 (514)
Q Consensus 361 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~-----~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~ 434 (514)
.+++...+ .++..+...++.++|.+.++++. ..|+ ...+..+...+...|+ +++|...++.+.+.+|+
T Consensus 174 --~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~ 247 (275)
T 1xnf_A 174 --SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGD---LDSATALFKLAVANNVH 247 (275)
T ss_dssp --SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTTCCT
T ss_pred --CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCC---HHHHHHHHHHHHhCCch
Confidence 23444444 36677778888899999998875 3232 5778888999999999 99999999999999987
Q ss_pred CCchHHHHHHHHHhcCCHHHHHHHH
Q 046312 435 GSQNLVIVANKYAEVGMWEKVSNVR 459 (514)
Q Consensus 435 ~~~~~~~l~~~~~~~g~~~~A~~~~ 459 (514)
+.. ....++...|++++|.+.+
T Consensus 248 ~~~---~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 248 NFV---EHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp TCH---HHHHHHHHHHHHHHC----
T ss_pred hHH---HHHHHHHHHHHHHhhHHHH
Confidence 643 4467788889999988776
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.8e-13 Score=123.38 Aligned_cols=242 Identities=12% Similarity=0.001 Sum_probs=114.2
Q ss_pred HHHHHHHHHcCCCHHHHHHHhhcc---CCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHh
Q 046312 167 NNNLVRFYGSCRRKRDACKVFDDM---CERSVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPD--ETTMLVVLSACT 241 (514)
Q Consensus 167 ~~~li~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~t~~~ll~~~~ 241 (514)
+......+...|++++|...|++. .+.+...+..+..++...|++++|+..+++..+.+..|+ ...|..+...+.
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~ 85 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILM 85 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence 334445555555555555555554 112333555555555555555555555555554221111 122444444555
Q ss_pred ccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 046312 242 ELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEEINVWTWSAMILGLAQHGYAEEALELFSN 321 (514)
Q Consensus 242 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 321 (514)
..|++++|...++...+... .+...|..+...|...|++++|...+++
T Consensus 86 ~~~~~~~A~~~~~~a~~~~~--------------------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 133 (272)
T 3u4t_A 86 KKGQDSLAIQQYQAAVDRDT--------------------------------TRLDMYGQIGSYFYNKGNFPLAIQYMEK 133 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHST--------------------------------TCTHHHHHHHHHHHHTTCHHHHHHHHGG
T ss_pred HcccHHHHHHHHHHHHhcCc--------------------------------ccHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 55555555555555544432 2234444444455555555555555554
Q ss_pred HHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCc-hHHHHHHHHHHHhcCC---HHHHHHHHHhCC---
Q 046312 322 MKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPM-RIHYHTMADILARAGH---LKEAYTFIMNMP--- 394 (514)
Q Consensus 322 m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~---~~~A~~~~~~~~--- 394 (514)
..+.. +.+...+..+...+...+++++|...++++.+. .|+ ...+..+...+...|+ +++|...++++.
T Consensus 134 al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 209 (272)
T 3u4t_A 134 QIRPT-TTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL---KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVC 209 (272)
T ss_dssp GCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHH
T ss_pred HhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHH
Confidence 44431 112333333331222223555555555555543 222 3344444444444444 444444444432
Q ss_pred -CCCC------HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 046312 395 -FQPN------PIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYA 447 (514)
Q Consensus 395 -~~p~------~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 447 (514)
..|+ ...|..+...+...|+ +++|.+.++++.+++|+++.+...+.....
T Consensus 210 ~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~al~~~p~~~~a~~~l~~~~~ 266 (272)
T 3u4t_A 210 APGGAKYKDELIEANEYIAYYYTINRD---KVKADAAWKNILALDPTNKKAIDGLKMKLE 266 (272)
T ss_dssp GGGGGGGHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTTCHHHHHHHC----
T ss_pred hcccccchHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCccHHHHHHHhhhhhc
Confidence 1122 1345556666666677 777777777777777776655555544443
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.56 E-value=7.9e-13 Score=129.67 Aligned_cols=189 Identities=9% Similarity=-0.052 Sum_probs=95.9
Q ss_pred HHHHHHHHHHhcC---CHHHHHHHHHhcCc---CCHHHHHHHHHHHHHc----CChHHHHHHHHHHHHCCCCCCHHHHHH
Q 046312 267 LGTALIDMYAKCG---AVGCARLLFSRMEE---INVWTWSAMILGLAQH----GYAEEALELFSNMKNSSISPNYVTFLG 336 (514)
Q Consensus 267 ~~~~li~~~~~~g---~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~----~~~~~a~~~~~~m~~~g~~p~~~~~~~ 336 (514)
.+..|...|...| +.++|++.|++..+ ++...+..+...|... +++++|..+|++.. .| +...+..
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~ 253 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVS 253 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHH
Confidence 4555555555555 55555555555443 2223334444444333 45666666666655 22 2233333
Q ss_pred HHHH-H--hccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcC-----CHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 046312 337 VLCA-C--NHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAG-----HLKEAYTFIMNMPFQPNPIVLRALLSA 408 (514)
Q Consensus 337 ll~~-~--~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-----~~~~A~~~~~~~~~~p~~~~~~~l~~~ 408 (514)
+... + ...+++++|..+|++..+. | +...+..|...|. .| ++++|.+.|++.. ..+...+..|...
T Consensus 254 Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g~~~A~~~Lg~~ 327 (452)
T 3e4b_A 254 LAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GREVAADYYLGQI 327 (452)
T ss_dssp HHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TTCHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CCCHHHHHHHHHH
Confidence 3333 2 3456666666666666543 2 3444444555554 33 6666666666665 4455555555544
Q ss_pred HHhc-CCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHh----cCCHHHHHHHHHHHHhCCC
Q 046312 409 SSIH-DAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAE----VGMWEKVSNVRRFMKNVGL 467 (514)
Q Consensus 409 ~~~~-~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~ 467 (514)
|... |-..+.++|...++++.+.+ ++.+...|+.+|.. ..+.++|...++...+.|.
T Consensus 328 y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 328 YRRGYLGKVYPQKALDHLLTAARNG--QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp HHTTTTSSCCHHHHHHHHHHHHTTT--CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred HHCCCCCCcCHHHHHHHHHHHHhhC--hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC
Confidence 4431 00112566666666655533 34455566666654 3456666666666665554
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.56 E-value=1e-13 Score=136.01 Aligned_cols=270 Identities=12% Similarity=-0.012 Sum_probs=120.0
Q ss_pred HhhcChhHHHHHHHHHHHhCCCCChHHHHHHHHhcccCCCCCh---HHHHHHHcccCCCCCcccHHHHHHHHHhCC----
Q 046312 36 KLCCSKKHLYQIHAQIQVSGLQNDAQILKELVRFCTLSSSKNL---TYARSILCNYVNDSVPIPWNNLIRGYAWSD---- 108 (514)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~li~~~~~~g---- 108 (514)
...++...+..++....+.|- +..+..|-..|. ..|+. ++|..+|++.. ..++..+..+...+...|
T Consensus 14 ~~~g~~~~A~~~~~~aa~~g~---~~A~~~Lg~~y~--~~g~~~d~~~A~~~~~~A~-~~~~~A~~~Lg~~~~~~~~~~~ 87 (452)
T 3e4b_A 14 LKRGDTVTAQQNYQQLAELGY---SEAQVGLADIQV--GTRDPAQIKQAEATYRAAA-DTSPRAQARLGRLLAAKPGATE 87 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC---CTGGGTCC-------------------------------CHHHHHHHHHTC--CCH
T ss_pred HhCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHH--ccCCCCCHHHHHHHHHHHH-hCCHHHHHHHHHHHHhCCCCCC
Confidence 333556666666666666552 223333444444 55555 66666666665 335556666655444444
Q ss_pred -CchHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCCch---HHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCH----
Q 046312 109 -RPREAVWVFIDMKRRGIKPTEFTYPFVLKACAEISGLN---EGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRK---- 180 (514)
Q Consensus 109 -~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~---- 180 (514)
++++|+..|++..+.|. ...+..+...|...+..+ .+.+.+......| +...+..|...|...+.+
T Consensus 88 ~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~ 161 (452)
T 3e4b_A 88 AEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHL 161 (452)
T ss_dssp HHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGH
T ss_pred cCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCH
Confidence 55667777766666542 224555555555444332 2333344444343 234555555556555533
Q ss_pred HHHHHHhhccCCCChhhHHHHHHHHHhCC---ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc----CChHHHHHHH
Q 046312 181 RDACKVFDDMCERSVVSWNVIITVCVENL---WLGEAVGYFVKMKDLGFEPDETTMLVVLSACTEL----GNLSLGKWVH 253 (514)
Q Consensus 181 ~~A~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~----g~~~~a~~~~ 253 (514)
+++..+++.....+...+..|...|.+.| +.++|+..|++..+.| .++...+..+...|... +++++|...|
T Consensus 162 ~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~ 240 (452)
T 3e4b_A 162 DDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALL 240 (452)
T ss_dssp HHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHH
Confidence 33444444444455556666666666666 6666666666666655 33444334444444333 4555555555
Q ss_pred HHHHHhCCCCchhHHHHHHHH-H--HhcCCHHHHHHHHHhcCc-CCHHHHHHHHHHHHHcC-----ChHHHHHHHHHHH
Q 046312 254 LQLIERGTVLNCQLGTALIDM-Y--AKCGAVGCARLLFSRMEE-INVWTWSAMILGLAQHG-----YAEEALELFSNMK 323 (514)
Q Consensus 254 ~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~-----~~~~a~~~~~~m~ 323 (514)
+... .| +...+..+... | ...+++++|..+|++..+ .+...+..|...|. .| ++++|..+|++..
T Consensus 241 ~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa 314 (452)
T 3e4b_A 241 EKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV 314 (452)
T ss_dssp HHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT
T ss_pred HHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh
Confidence 5554 22 33333344433 2 234455555555544433 23344444444443 22 4444444444443
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.56 E-value=3.6e-13 Score=118.18 Aligned_cols=192 Identities=12% Similarity=-0.060 Sum_probs=111.1
Q ss_pred hhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 046312 195 VVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDM 274 (514)
Q Consensus 195 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 274 (514)
...+..+...+.+.|++++|...|++..+.. +.+...+..+..++.+.|++++|...++...+... .+...+..+..+
T Consensus 5 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~ 82 (217)
T 2pl2_A 5 EQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTP-RYLGGYMVLSEA 82 (217)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHH
Confidence 3444445555555555555555555555432 22344445555555555555555555555555442 234445555555
Q ss_pred HHhc-----------CCHHHHHHHHHhcCc--C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 046312 275 YAKC-----------GAVGCARLLFSRMEE--I-NVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCA 340 (514)
Q Consensus 275 ~~~~-----------g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 340 (514)
|... |++++|+..|++..+ | +...|..+...+...|++++|+..|++..+.. .+...+..+..+
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~ 160 (217)
T 2pl2_A 83 YVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAEL 160 (217)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHH
T ss_pred HHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHH
Confidence 5555 777777777776654 3 45667777777788888888888888877765 566777777777
Q ss_pred HhccCcHHHHHHHHHHHHHhhCCCC-chHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 046312 341 CNHAGMVEDGYRYFHEMEHVHGIKP-MRIHYHTMADILARAGHLKEAYTFIMNM 393 (514)
Q Consensus 341 ~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~ 393 (514)
+...|++++|...|++..+. .| +...+..+...+.+.|++++|.+.+++.
T Consensus 161 ~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 161 YLSMGRLDEALAQYAKALEQ---APKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHTC--------------
T ss_pred HHHcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 88888888888888887764 34 3566777777777888888888777665
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.4e-12 Score=117.18 Aligned_cols=232 Identities=10% Similarity=-0.046 Sum_probs=146.5
Q ss_pred CcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCHHHHHHHhhccCC--CCh----hhHHHH
Q 046312 128 TEFTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKRDACKVFDDMCE--RSV----VSWNVI 201 (514)
Q Consensus 128 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~~~----~~~~~l 201 (514)
|...+......+...|++++|...++++.+.. +.+..++..+..+|...|++++|...+++... ++. ..|..+
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~l 80 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYY 80 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHH
Confidence 34556677888999999999999999999875 44566899999999999999999999998843 232 348899
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH
Q 046312 202 ITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAV 281 (514)
Q Consensus 202 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 281 (514)
...+...|++++|+..|++..+.. +.+...+..+...+...|++++|...++...+.. +
T Consensus 81 g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~------------------- 139 (272)
T 3u4t_A 81 GKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-T------------------- 139 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-C-------------------
T ss_pred HHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-C-------------------
Confidence 999999999999999999998863 2344555555555555555555555555544432 1
Q ss_pred HHHHHHHHhcCcCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCc---HHHHHHHHHHHH
Q 046312 282 GCARLLFSRMEEINVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGM---VEDGYRYFHEME 358 (514)
Q Consensus 282 ~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~ 358 (514)
.+...|..+...+...+++++|...|+++.+.. +.+...+..+..++...|+ ++.|...++++.
T Consensus 140 ------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 206 (272)
T 3u4t_A 140 ------------TDPKVFYELGQAYYYNKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLI 206 (272)
T ss_dssp ------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHH
T ss_pred ------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHH
Confidence 123344444422223335566666666555531 1223444444455555555 555555555555
Q ss_pred HhhCCCCc------hHHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 046312 359 HVHGIKPM------RIHYHTMADILARAGHLKEAYTFIMNMP 394 (514)
Q Consensus 359 ~~~~~~p~------~~~~~~li~~~~~~g~~~~A~~~~~~~~ 394 (514)
+...-.|+ ...|..+...|.+.|++++|.+.++++.
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 248 (272)
T 3u4t_A 207 EVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNIL 248 (272)
T ss_dssp HHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 43222233 1345556666666666666666666654
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=4.7e-13 Score=122.03 Aligned_cols=240 Identities=9% Similarity=-0.140 Sum_probs=153.0
Q ss_pred hCCCchHHHHHHHHHHHcCCC---CCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCHHH
Q 046312 106 WSDRPREAVWVFIDMKRRGIK---PTEFTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKRD 182 (514)
Q Consensus 106 ~~g~~~~a~~~~~~m~~~~~~---p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 182 (514)
..|++++|++.|+++.+.... .+...+..+...+...|++++|...++++.+.. +.+..++..+..+|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 346677777777777664211 123456666777777777777777777777664 3356677777777777777777
Q ss_pred HHHHhhcc---CCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHh
Q 046312 183 ACKVFDDM---CERSVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIER 259 (514)
Q Consensus 183 A~~~~~~~---~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 259 (514)
|...|++. .+.+..+|..+...+.+.|++++|...|+++.+. .|+.......+..+...|++++|...++.....
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 77777776 2335667777778888888888888888888775 344444444444556668888888888777766
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCcCC-------HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH
Q 046312 260 GTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEEIN-------VWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYV 332 (514)
Q Consensus 260 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 332 (514)
.. ++...+ .++..+...++.++|...++...+.+ ...|..+...|...|++++|...|++..+. .|+.
T Consensus 174 ~~-~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~- 248 (275)
T 1xnf_A 174 SD-KEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVHN- 248 (275)
T ss_dssp SC-CCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCTT-
T ss_pred CC-cchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--Cchh-
Confidence 42 233333 36666677777777777777766522 356667777777777777777777777764 3422
Q ss_pred HHHHHHHHHhccCcHHHHHHHH
Q 046312 333 TFLGVLCACNHAGMVEDGYRYF 354 (514)
Q Consensus 333 ~~~~ll~~~~~~~~~~~a~~~~ 354 (514)
+.....++...|++++|...+
T Consensus 249 -~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 -FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp -CHHHHHHHHHHHHHHHC----
T ss_pred -HHHHHHHHHHHHHHHhhHHHH
Confidence 112233455556666665544
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=5.5e-12 Score=114.96 Aligned_cols=225 Identities=10% Similarity=-0.049 Sum_probs=143.8
Q ss_pred ChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCChHHHHHHHHHHHHhCCCCchhHHH
Q 046312 194 SVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTE----LGNLSLGKWVHLQLIERGTVLNCQLGT 269 (514)
Q Consensus 194 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~ 269 (514)
+..++..+...+...|++++|...|++..+. .+...+..+...+.. .+++++|...+++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 3445556666666667777777777766662 234455556666666 667777777777666654 455666
Q ss_pred HHHHHHHh----cCCHHHHHHHHHhcCc-CCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 046312 270 ALIDMYAK----CGAVGCARLLFSRMEE-INVWTWSAMILGLAQ----HGYAEEALELFSNMKNSSISPNYVTFLGVLCA 340 (514)
Q Consensus 270 ~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 340 (514)
.+...|.. .+++++|...|++..+ .+...+..+...|.. .+++++|..+|++..+.+ +...+..+...
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 155 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSL 155 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHH
Confidence 66666666 6677777766666554 355566666666766 777777777777777654 44455555566
Q ss_pred Hhc----cCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-
Q 046312 341 CNH----AGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILAR----AGHLKEAYTFIMNMPFQPNPIVLRALLSASSI- 411 (514)
Q Consensus 341 ~~~----~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~- 411 (514)
|.. .+++++|...+++..+. .+...+..+...|.. .+++++|.+.|++.....+...+..+...+..
T Consensus 156 ~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g 231 (273)
T 1ouv_A 156 YDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNG 231 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcC
Confidence 665 67777777777777653 234555666666777 77777777777666422235555666666666
Q ss_pred ---cCCCCcchHHHHHHHHHHhcCCC
Q 046312 412 ---HDAKYQDGVGNEVRRRLLELEPR 434 (514)
Q Consensus 412 ---~~~~~~~~~a~~~~~~~~~~~p~ 434 (514)
.++ .++|.+.++++.+.+|+
T Consensus 232 ~~~~~~---~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 232 EGVTRN---EKQAIENFKKGCKLGAK 254 (273)
T ss_dssp SSSSCC---STTHHHHHHHHHHHTCH
T ss_pred CCcccC---HHHHHHHHHHHHHcCCH
Confidence 666 77777777777776664
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.54 E-value=2e-12 Score=116.17 Aligned_cols=204 Identities=11% Similarity=-0.001 Sum_probs=99.2
Q ss_pred hhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 046312 195 VVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDM 274 (514)
Q Consensus 195 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 274 (514)
...|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++++.+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~------------- 102 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDS------------- 102 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------------
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-------------
Confidence 3445555555555556666655555555442 22344444444444555555555555544444321
Q ss_pred HHhcCCHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHH
Q 046312 275 YAKCGAVGCARLLFSRMEEINVWTWSAMILGLAQHGYAEEALELFSNMKNSSISP-NYVTFLGVLCACNHAGMVEDGYRY 353 (514)
Q Consensus 275 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~ 353 (514)
.+...+..+...+...|++++|..+++++.+.+..| +...+..+..++...|++++|..+
T Consensus 103 -------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 163 (252)
T 2ho1_A 103 -------------------RNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEY 163 (252)
T ss_dssp -------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred -------------------CcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 123344444444455555555555555544422223 233344444555555555555555
Q ss_pred HHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhc
Q 046312 354 FHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP--FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLEL 431 (514)
Q Consensus 354 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~ 431 (514)
++++.+.. +.+...+..+...+.+.|++++|...++++. .+.+...+..+...+...|+ .+.|.+.++.+.+.
T Consensus 164 ~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 164 FEKSLRLN--RNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFED---RDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHH
T ss_pred HHHHHhcC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccC---HHHHHHHHHHHHHH
Confidence 55555431 1224444555555555555555555555542 22234444555555555555 55555555555555
Q ss_pred CCCCC
Q 046312 432 EPRGS 436 (514)
Q Consensus 432 ~p~~~ 436 (514)
.|+++
T Consensus 239 ~p~~~ 243 (252)
T 2ho1_A 239 YPGSL 243 (252)
T ss_dssp CTTSH
T ss_pred CCCCH
Confidence 55543
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.53 E-value=3.3e-13 Score=120.54 Aligned_cols=171 Identities=10% Similarity=0.021 Sum_probs=94.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCc---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 046312 268 GTALIDMYAKCGAVGCARLLFSRMEE---INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHA 344 (514)
Q Consensus 268 ~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 344 (514)
+..+...|...|++++|...|+++.+ .+...+..+...+...|++++|..+++++.+.. +.+...+..+...+...
T Consensus 60 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~ 138 (243)
T 2q7f_A 60 YINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKL 138 (243)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHh
Confidence 33333344444444444444443332 234445555555556666666666666655532 23344555555666666
Q ss_pred CcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCCCcchHHH
Q 046312 345 GMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP--FQPNPIVLRALLSASSIHDAKYQDGVGN 422 (514)
Q Consensus 345 ~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~~~~a~ 422 (514)
|++++|..+++++.+. .+.+...+..+...+.+.|++++|...++++. .+.+..++..+...+...|+ .+.|.
T Consensus 139 ~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~---~~~A~ 213 (243)
T 2q7f_A 139 EQPKLALPYLQRAVEL--NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKEN---REKAL 213 (243)
T ss_dssp SCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---TTHHH
T ss_pred ccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccC---HHHHH
Confidence 6666666666666553 12234555566666666666666666666653 22345566666666666666 67777
Q ss_pred HHHHHHHhcCCCCCchHHHHHH
Q 046312 423 EVRRRLLELEPRGSQNLVIVAN 444 (514)
Q Consensus 423 ~~~~~~~~~~p~~~~~~~~l~~ 444 (514)
..++.+.+..|+++.++..+..
T Consensus 214 ~~~~~~~~~~p~~~~~~~~~~~ 235 (243)
T 2q7f_A 214 EMLDKAIDIQPDHMLALHAKKL 235 (243)
T ss_dssp HHHHHHHHHCTTCHHHHHHHTC
T ss_pred HHHHHHHccCcchHHHHHHHHH
Confidence 7777777766666555544433
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.53 E-value=5.9e-12 Score=114.78 Aligned_cols=224 Identities=8% Similarity=-0.087 Sum_probs=195.3
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cCCHHHHHHHHHhcCc-CCHHHHHHHH
Q 046312 229 DETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAK----CGAVGCARLLFSRMEE-INVWTWSAMI 303 (514)
Q Consensus 229 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li 303 (514)
+..++..+...+...|++++|...++...+.+ +...+..+...|.. .+++++|...|++..+ .+...+..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 55677788888999999999999999999843 56778889999999 9999999999998875 4778888999
Q ss_pred HHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCcHHHHHHHHHHHHHhhCCCCchHHHHHHHH
Q 046312 304 LGLAQ----HGYAEEALELFSNMKNSSISPNYVTFLGVLCACNH----AGMVEDGYRYFHEMEHVHGIKPMRIHYHTMAD 375 (514)
Q Consensus 304 ~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 375 (514)
..|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|...+++..+. + +...+..+..
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~ 154 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCTILGS 154 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHH
Confidence 99999 999999999999999875 67788888888988 99999999999999974 3 5667778888
Q ss_pred HHHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 046312 376 ILAR----AGHLKEAYTFIMNMPFQPNPIVLRALLSASSI----HDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYA 447 (514)
Q Consensus 376 ~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 447 (514)
.|.. .+++++|...|++.....+...+..+...+.. .++ +++|...++++.+.+| +.++..++.+|.
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~---~~~A~~~~~~a~~~~~--~~a~~~l~~~~~ 229 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKN---FKEALARYSKACELEN--GGGCFNLGAMQY 229 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCC---HHHHHHHHHHHHHTTC--HHHHHHHHHHHH
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCcc---HHHHHHHHHHHHhCCC--HHHHHHHHHHHH
Confidence 8888 99999999999988633467788888888988 888 9999999999999876 567889999999
Q ss_pred h----cCCHHHHHHHHHHHHhCCC
Q 046312 448 E----VGMWEKVSNVRRFMKNVGL 467 (514)
Q Consensus 448 ~----~g~~~~A~~~~~~m~~~~~ 467 (514)
+ .|++++|.+.+++..+.|.
T Consensus 230 ~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 230 NGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp TTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred cCCCcccCHHHHHHHHHHHHHcCC
Confidence 9 9999999999999987664
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.53 E-value=1.3e-12 Score=117.40 Aligned_cols=198 Identities=10% Similarity=-0.012 Sum_probs=169.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCc---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 046312 265 CQLGTALIDMYAKCGAVGCARLLFSRMEE---INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCAC 341 (514)
Q Consensus 265 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 341 (514)
...+..+...+...|++++|...|+++.+ .+...+..+...+...|++++|..+++++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 45666777777888888888888877664 356788888899999999999999999998753 34577888889999
Q ss_pred hccCcHHHHHHHHHHHHHhhCCCC-chHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCCCcc
Q 046312 342 NHAGMVEDGYRYFHEMEHVHGIKP-MRIHYHTMADILARAGHLKEAYTFIMNMP--FQPNPIVLRALLSASSIHDAKYQD 418 (514)
Q Consensus 342 ~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~~ 418 (514)
...|++++|..+++++.. .+..| +...+..+...+.+.|++++|.+.++++. .+.+...+..+...+...|+ +
T Consensus 116 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~ 191 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKERE---Y 191 (252)
T ss_dssp HHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC---H
T ss_pred HHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCC---H
Confidence 999999999999999986 23455 46778889999999999999999999885 33468889999999999999 9
Q ss_pred hHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 046312 419 GVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNVGL 467 (514)
Q Consensus 419 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 467 (514)
+.|...++.+.+..|.+...+..++.+|.+.|++++|.++++++.+...
T Consensus 192 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p 240 (252)
T 2ho1_A 192 VPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYP 240 (252)
T ss_dssp HHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC
Confidence 9999999999999999888999999999999999999999999987543
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.52 E-value=3.1e-13 Score=131.15 Aligned_cols=259 Identities=10% Similarity=-0.030 Sum_probs=146.2
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCChHHHHHHHHHHHHh----C-CCCchhHHHHHH
Q 046312 202 ITVCVENLWLGEAVGYFVKMKDLGFEPDE----TTMLVVLSACTELGNLSLGKWVHLQLIER----G-TVLNCQLGTALI 272 (514)
Q Consensus 202 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~t~~~ll~~~~~~g~~~~a~~~~~~~~~~----~-~~~~~~~~~~li 272 (514)
...+...|++++|+..|+++.+.+ +.+. ..+..+...+...|++++|...+++..+. + ......++..+.
T Consensus 55 g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 133 (411)
T 4a1s_A 55 GERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLG 133 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHH
Confidence 344445555555555555554432 1111 23444444455555555555555544332 1 111234445555
Q ss_pred HHHHhcCCHHHHHHHHHhcCc---------CCHHHHHHHHHHHHHcCC-----------------hHHHHHHHHHHHHC-
Q 046312 273 DMYAKCGAVGCARLLFSRMEE---------INVWTWSAMILGLAQHGY-----------------AEEALELFSNMKNS- 325 (514)
Q Consensus 273 ~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~~~-----------------~~~a~~~~~~m~~~- 325 (514)
..|...|++++|...|++..+ ....++..+...|...|+ +++|...+++..+.
T Consensus 134 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~ 213 (411)
T 4a1s_A 134 NTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLM 213 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 555556666666555555432 112355556666666666 66666666655431
Q ss_pred ---CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCc----hHHHHHHHHHHHhcCCHHHHHHHHHhCC---
Q 046312 326 ---SISP-NYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPM----RIHYHTMADILARAGHLKEAYTFIMNMP--- 394 (514)
Q Consensus 326 ---g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~--- 394 (514)
+-.+ ...++..+...+...|++++|...+++..+...-.++ ...+..+...|...|++++|...+++..
T Consensus 214 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 293 (411)
T 4a1s_A 214 RDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALA 293 (411)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 1111 1235556666677777777777777766643111111 2256667777777777777777776653
Q ss_pred -CCC----CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCC------CchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 046312 395 -FQP----NPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRG------SQNLVIVANKYAEVGMWEKVSNVRRFMK 463 (514)
Q Consensus 395 -~~p----~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 463 (514)
... ...++..+...+...|+ +++|...++.+.++.+.. ..++..++.+|.+.|++++|.+.+++..
T Consensus 294 ~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 370 (411)
T 4a1s_A 294 VELGEREVEAQSCYSLGNTYTLLHE---FNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHL 370 (411)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 111 14566667777777777 777777777777654322 2367788888888888888888888765
Q ss_pred h
Q 046312 464 N 464 (514)
Q Consensus 464 ~ 464 (514)
+
T Consensus 371 ~ 371 (411)
T 4a1s_A 371 Q 371 (411)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.52 E-value=4.1e-12 Score=111.79 Aligned_cols=135 Identities=13% Similarity=0.058 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHc-CChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHH
Q 046312 297 WTWSAMILGLAQH-GYAEEALELFSNMKNSSISPN-YVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMA 374 (514)
Q Consensus 297 ~~~~~li~~~~~~-~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li 374 (514)
..+..+...+... |++++|...++++.+.+..|+ ...+..+..++...|++++|...++++.+. .+.+...+..+.
T Consensus 77 ~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la 154 (225)
T 2vq2_A 77 EINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA--QPQFPPAFKELA 154 (225)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCchHHHHHH
Confidence 3444444444555 555555555555544212222 333444444555555555555555555442 111244444455
Q ss_pred HHHHhcCCHHHHHHHHHhCC--CC-CCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCC
Q 046312 375 DILARAGHLKEAYTFIMNMP--FQ-PNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGS 436 (514)
Q Consensus 375 ~~~~~~g~~~~A~~~~~~~~--~~-p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 436 (514)
..+.+.|++++|.+.++++. .+ .+...+..+...+...|+ .+.+...++.+.+..|+++
T Consensus 155 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~a~~~~~~~~~~~p~~~ 216 (225)
T 2vq2_A 155 RTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGN---AQAAYEYEAQLQANFPYSE 216 (225)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCc---HHHHHHHHHHHHHhCCCCH
Confidence 55555555555555555443 12 234444444444455555 5555555555555555544
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.52 E-value=9.7e-13 Score=127.22 Aligned_cols=269 Identities=9% Similarity=-0.032 Sum_probs=138.6
Q ss_pred cchHHHHHHHHHcCCCHHHHHHHhhccC---CCC----hhhHHHHHHHHHhCCChhHHHHHHHHHHHC----CCCCC-HH
Q 046312 164 VYTNNNLVRFYGSCRRKRDACKVFDDMC---ERS----VVSWNVIITVCVENLWLGEAVGYFVKMKDL----GFEPD-ET 231 (514)
Q Consensus 164 ~~~~~~li~~~~~~~~~~~A~~~~~~~~---~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p~-~~ 231 (514)
...+......+...|++++|...|++.. +.+ ...|..+...+...|++++|...+++.... +..|. ..
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 88 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 88 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 3344555666667777777777776652 122 235666666667777777777776665432 11111 33
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHhCCC-----CchhHHHHHHHHHHhcCC--------------------HHHHHH
Q 046312 232 TMLVVLSACTELGNLSLGKWVHLQLIERGTV-----LNCQLGTALIDMYAKCGA--------------------VGCARL 286 (514)
Q Consensus 232 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~~~~~li~~~~~~g~--------------------~~~A~~ 286 (514)
++..+...+...|++++|...+++..+.... ....++..+...|...|+ +++|..
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~ 168 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD 168 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence 4555556666666666666666665543110 012355555566666666 566655
Q ss_pred HHHhcCc-----C----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCcHHHHHH
Q 046312 287 LFSRMEE-----I----NVWTWSAMILGLAQHGYAEEALELFSNMKNSSI-SPN----YVTFLGVLCACNHAGMVEDGYR 352 (514)
Q Consensus 287 ~~~~~~~-----~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~~~~~~a~~ 352 (514)
.+++..+ . ...++..+...+...|++++|...+++..+... .++ ..++..+...+...|++++|..
T Consensus 169 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 248 (406)
T 3sf4_A 169 FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 248 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 5554432 1 123455555555566666666666655543210 011 1244455555555666666666
Q ss_pred HHHHHHHhhCCCCc----hHHHHHHHHHHHhcCCHHHHHHHHHhCC----CCCC----HHHHHHHHHHHHhcCCCCcchH
Q 046312 353 YFHEMEHVHGIKPM----RIHYHTMADILARAGHLKEAYTFIMNMP----FQPN----PIVLRALLSASSIHDAKYQDGV 420 (514)
Q Consensus 353 ~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~p~----~~~~~~l~~~~~~~~~~~~~~~ 420 (514)
.+++..+...-.++ ..++..+...|.+.|++++|...+++.. ..++ ..++..+...+...|+ +++
T Consensus 249 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~ 325 (406)
T 3sf4_A 249 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGN---HDQ 325 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC---HHH
T ss_pred HHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC---HHH
Confidence 55555432110111 3344455555555566666665555543 1122 3344455555555555 555
Q ss_pred HHHHHHHHHhcCCCC
Q 046312 421 GNEVRRRLLELEPRG 435 (514)
Q Consensus 421 a~~~~~~~~~~~p~~ 435 (514)
|.+.++.+.++.+..
T Consensus 326 A~~~~~~al~~~~~~ 340 (406)
T 3sf4_A 326 AMHFAEKHLEISREV 340 (406)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHh
Confidence 555555555555443
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.52 E-value=2.8e-12 Score=112.87 Aligned_cols=198 Identities=11% Similarity=-0.000 Sum_probs=167.2
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCc---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 046312 264 NCQLGTALIDMYAKCGAVGCARLLFSRMEE---INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCA 340 (514)
Q Consensus 264 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 340 (514)
+...+..+...+...|++++|.+.|+++.+ .+...+..+...+...|++++|..+++++.+.. +.+..++..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 455666777777788888888888877654 356788888889999999999999999998753 3457788889999
Q ss_pred Hhcc-CcHHHHHHHHHHHHHhhCCCCc-hHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCCC
Q 046312 341 CNHA-GMVEDGYRYFHEMEHVHGIKPM-RIHYHTMADILARAGHLKEAYTFIMNMP--FQPNPIVLRALLSASSIHDAKY 416 (514)
Q Consensus 341 ~~~~-~~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~ 416 (514)
+... |++++|..+++++.+ .+..|+ ...+..+...+.+.|++++|...++++. .+.+...+..+...+...|+
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-- 162 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQ-- 162 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTC--
T ss_pred HHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCC--
Confidence 9999 999999999999986 234444 6778889999999999999999999885 33458889999999999999
Q ss_pred cchHHHHHHHHHHhcCC-CCCchHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 046312 417 QDGVGNEVRRRLLELEP-RGSQNLVIVANKYAEVGMWEKVSNVRRFMKNVG 466 (514)
Q Consensus 417 ~~~~a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 466 (514)
+++|...++.+.+..| .+...+..++..+...|+.++|..+++.+....
T Consensus 163 -~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 163 -LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF 212 (225)
T ss_dssp -HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred -HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 9999999999999999 888888899999999999999999999987644
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.51 E-value=5.2e-13 Score=119.24 Aligned_cols=199 Identities=11% Similarity=0.039 Sum_probs=157.1
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcCc---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 046312 263 LNCQLGTALIDMYAKCGAVGCARLLFSRMEE---INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLC 339 (514)
Q Consensus 263 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 339 (514)
.....+..+...+...|++++|...|+++.+ .+...+..+...+...|++++|...++++.+.. +.+...+..+..
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 3455667777788888899998888888764 467888889999999999999999999998853 345778888899
Q ss_pred HHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCCCc
Q 046312 340 ACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP--FQPNPIVLRALLSASSIHDAKYQ 417 (514)
Q Consensus 340 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~ 417 (514)
.+...|++++|..+++++.+.. +.+...+..+...+.+.|++++|...++++. .+.+...+..+...+...|+
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--- 174 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG--MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGM--- 174 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT--CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC---
T ss_pred HHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCC---
Confidence 9999999999999999998752 3457788889999999999999999999885 44568889999999999999
Q ss_pred chHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 046312 418 DGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNVGL 467 (514)
Q Consensus 418 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 467 (514)
++.|...++.+.+..|+++.++..++.+|.+.|++++|.+.++++.+...
T Consensus 175 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 224 (243)
T 2q7f_A 175 LDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQP 224 (243)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCc
Confidence 99999999999999999999999999999999999999999999987543
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.51 E-value=1.9e-12 Score=123.15 Aligned_cols=248 Identities=11% Similarity=0.050 Sum_probs=162.1
Q ss_pred hhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC-hHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 046312 195 VVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGN-LSLGKWVHLQLIERGTVLNCQLGTALID 273 (514)
Q Consensus 195 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~li~ 273 (514)
...|+.+...+.+.|++++|+..+++.++.. +-+...|..+..++...|+ +++|...++++++.... +..+|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
Confidence 3455666666666677777777777766653 2345566666666666665 77777777777666533 5666666777
Q ss_pred HHHhcCCHHHHHHHHHhcCc---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-cCcHHH
Q 046312 274 MYAKCGAVGCARLLFSRMEE---INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNH-AGMVED 349 (514)
Q Consensus 274 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~-~~~~~~ 349 (514)
++...|++++|+..|+++.+ .+...|..+..++...|++++|+..++++++.. +-+...|+.+..++.. .|..++
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchH
Confidence 77777777777777776664 356677777777777777777877777777743 2245666667666766 454455
Q ss_pred H-----HHHHHHHHHhhCCCCc-hHHHHHHHHHHHhcC--CHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCC-----
Q 046312 350 G-----YRYFHEMEHVHGIKPM-RIHYHTMADILARAG--HLKEAYTFIMNMPFQP-NPIVLRALLSASSIHDAK----- 415 (514)
Q Consensus 350 a-----~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~----- 415 (514)
| ...+++.... .|+ ...|..+...+.+.| ++++|.+.+.++...| +...+..+...+...++.
T Consensus 254 A~~~~el~~~~~Al~l---~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 254 AVLEREVQYTLEMIKL---VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp HHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccch
Confidence 5 4667776653 444 556777777777766 5777777777665333 456677777777765410
Q ss_pred C-cchHHHHHHHHH-HhcCCCCCchHHHHHHHHHh
Q 046312 416 Y-QDGVGNEVRRRL-LELEPRGSQNLVIVANKYAE 448 (514)
Q Consensus 416 ~-~~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~~ 448 (514)
. ..++|.++++.+ .+++|.....|..++..+..
T Consensus 331 ~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 331 EDILNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 0 147788888888 78888777777766665543
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.3e-12 Score=122.63 Aligned_cols=262 Identities=10% Similarity=0.013 Sum_probs=176.3
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHhccCChHHHHHHHHHHHHh----CCC-CchhHHHH
Q 046312 200 VIITVCVENLWLGEAVGYFVKMKDLGFEPD----ETTMLVVLSACTELGNLSLGKWVHLQLIER----GTV-LNCQLGTA 270 (514)
Q Consensus 200 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~ 270 (514)
.....+...|++++|...|+++.+.. +.+ ...+..+...+...|++++|...+++..+. +.. ....++..
T Consensus 10 ~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 88 (338)
T 3ro2_A 10 LEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN 88 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence 34455666666666666666666642 112 245555666666667777776666665433 111 12445666
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCc-----CC----HHHHHHHHHHHHHcCC--------------------hHHHHHHHHH
Q 046312 271 LIDMYAKCGAVGCARLLFSRMEE-----IN----VWTWSAMILGLAQHGY--------------------AEEALELFSN 321 (514)
Q Consensus 271 li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~~~--------------------~~~a~~~~~~ 321 (514)
+...|...|++++|...+++..+ ++ ..++..+...+...|+ +++|...+++
T Consensus 89 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 168 (338)
T 3ro2_A 89 LGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEE 168 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 67777777777777777766543 12 2366667777777777 7888877777
Q ss_pred HHHC----CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCc----hHHHHHHHHHHHhcCCHHHHHHHHHh
Q 046312 322 MKNS----SISPN-YVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPM----RIHYHTMADILARAGHLKEAYTFIMN 392 (514)
Q Consensus 322 m~~~----g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~ 392 (514)
.... +..+. ..++..+...+...|++++|...+++..+...-.++ ...+..+...+...|++++|...+++
T Consensus 169 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 248 (338)
T 3ro2_A 169 NLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK 248 (338)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6542 11111 345667777888888999988888887653111111 33677788888899999999888887
Q ss_pred CC----CCCC----HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCC------CchHHHHHHHHHhcCCHHHHHHH
Q 046312 393 MP----FQPN----PIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRG------SQNLVIVANKYAEVGMWEKVSNV 458 (514)
Q Consensus 393 ~~----~~p~----~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~ 458 (514)
.. ..++ ..++..+...+...|+ +++|...++.+.++.+.. ..++..++.+|.+.|++++|...
T Consensus 249 al~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 325 (338)
T 3ro2_A 249 TLLLARQLKDRAVEAQSCYSLGNTYTLLQD---YEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHF 325 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHhhcchhHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 63 1122 4667778888899999 999999998887765432 23677899999999999999999
Q ss_pred HHHHHhC
Q 046312 459 RRFMKNV 465 (514)
Q Consensus 459 ~~~m~~~ 465 (514)
+++..+.
T Consensus 326 ~~~a~~~ 332 (338)
T 3ro2_A 326 AEKHLEI 332 (338)
T ss_dssp HHHHHHC
T ss_pred HHHHHHH
Confidence 9998764
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.48 E-value=1.5e-11 Score=117.02 Aligned_cols=226 Identities=9% Similarity=0.033 Sum_probs=128.3
Q ss_pred ccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCC-chHHHHHHHHHHHhCCCCCcchHHHHHHH
Q 046312 95 IPWNNLIRGYAWSDRPREAVWVFIDMKRRGIKPTEFTYPFVLKACAEISG-LNEGMQVQANVTKSGLDSDVYTNNNLVRF 173 (514)
Q Consensus 95 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 173 (514)
..|+.+...+.+.|++++|++.|++..+.. +-+...|+.+..++...|+ +++|+..++++++.. +-+..+|..+..+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 456667777777777777777777776642 2234466667777777775 777777777777664 3345566666666
Q ss_pred HHcCCCHHHHHHHhhcc---CCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-cCChHHH
Q 046312 174 YGSCRRKRDACKVFDDM---CERSVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTE-LGNLSLG 249 (514)
Q Consensus 174 ~~~~~~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~-~g~~~~a 249 (514)
+...|++++|...|+++ ...+..+|..+..++.+.|++++|+..|+++++.. +-+...|..+..++.. .|..++|
T Consensus 176 ~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~eA 254 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRA 254 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHH
T ss_pred HHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchHH
Confidence 66666666666666655 22345556666666666666666666666665543 2244455555555544 3333444
Q ss_pred -----HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCcCCHHHHHHHHHHHHHcC--ChHHHHHHHHHH
Q 046312 250 -----KWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEEINVWTWSAMILGLAQHG--YAEEALELFSNM 322 (514)
Q Consensus 250 -----~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~m 322 (514)
...++..++... .+...|+.+...+...| ++++|++.+.++
T Consensus 255 ~~~~el~~~~~Al~l~P--------------------------------~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~ 302 (382)
T 2h6f_A 255 VLEREVQYTLEMIKLVP--------------------------------HNESAWNYLKGILQDRGLSKYPNLLNQLLDL 302 (382)
T ss_dssp HHHHHHHHHHHHHHHST--------------------------------TCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCC--------------------------------CCHHHHHHHHHHHHccCccchHHHHHHHHHh
Confidence 233333333321 23445555555555555 456666666655
Q ss_pred HHCCCCCCHHHHHHHHHHHhccC---------cHHHHHHHHHHH
Q 046312 323 KNSSISPNYVTFLGVLCACNHAG---------MVEDGYRYFHEM 357 (514)
Q Consensus 323 ~~~g~~p~~~~~~~ll~~~~~~~---------~~~~a~~~~~~~ 357 (514)
+. -+.+...+..+..+|.+.| ..++|..+++++
T Consensus 303 -~~-~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l 344 (382)
T 2h6f_A 303 -QP-SHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEIL 344 (382)
T ss_dssp -TT-TCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred -cc-CCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHH
Confidence 21 2233445555556665542 246666666666
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.1e-12 Score=127.25 Aligned_cols=57 Identities=14% Similarity=0.025 Sum_probs=31.5
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHcCCCCCc-----chHHHHHHHHhccCCchHHHHHHHHHHH
Q 046312 99 NLIRGYAWSDRPREAVWVFIDMKRRGIKPTE-----FTYPFVLKACAEISGLNEGMQVQANVTK 157 (514)
Q Consensus 99 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-----~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 157 (514)
.+...+...|++++|+..|+++.+. .|+. ..|..+...+...|++++|...+++..+
T Consensus 53 ~~g~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 114 (411)
T 4a1s_A 53 LEGERLCNAGDCRAGVAFFQAAIQA--GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLT 114 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHh--cccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3445556666666666666666554 2222 2455555555566666666666655543
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.47 E-value=2.8e-12 Score=123.91 Aligned_cols=289 Identities=10% Similarity=-0.060 Sum_probs=162.6
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCc-----chHHHHHHHHhccCCchHHHHHHHHHHHhCCC-CCcchHHHH
Q 046312 97 WNNLIRGYAWSDRPREAVWVFIDMKRRGIKPTE-----FTYPFVLKACAEISGLNEGMQVQANVTKSGLD-SDVYTNNNL 170 (514)
Q Consensus 97 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l 170 (514)
+......+...|++++|+..|++..+. .|+. ..+..+...+...|++++|...++++....-. .+.
T Consensus 12 l~~~g~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~------ 83 (406)
T 3sf4_A 12 LALEGERLCKSGDCRAGVSFFEAAVQV--GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQ------ 83 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH------
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccc------
Confidence 444455555666666666666666554 2221 24445555555566666666665554332100 000
Q ss_pred HHHHHcCCCHHHHHHHhhccCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCC
Q 046312 171 VRFYGSCRRKRDACKVFDDMCERSVVSWNVIITVCVENLWLGEAVGYFVKMKDLGF-EPD----ETTMLVVLSACTELGN 245 (514)
Q Consensus 171 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~----~~t~~~ll~~~~~~g~ 245 (514)
.....++..+...+...|++++|...+++..+... .++ ..++..+...+...|+
T Consensus 84 ---------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 142 (406)
T 3sf4_A 84 ---------------------LGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK 142 (406)
T ss_dssp ---------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCC
Confidence 00122334444444445555555544444433200 001 2244445555555555
Q ss_pred --------------------hHHHHHHHHHHHHh----CC-CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCc-----CC
Q 046312 246 --------------------LSLGKWVHLQLIER----GT-VLNCQLGTALIDMYAKCGAVGCARLLFSRMEE-----IN 295 (514)
Q Consensus 246 --------------------~~~a~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~ 295 (514)
+++|...++...+. +. .....++..+...|...|++++|...+++..+ ++
T Consensus 143 ~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 222 (406)
T 3sf4_A 143 SFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD 222 (406)
T ss_dssp TCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCC
Confidence 55555555544332 11 11234566667777777777777777776653 12
Q ss_pred ----HHHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCc
Q 046312 296 ----VWTWSAMILGLAQHGYAEEALELFSNMKNS----SISPN-YVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPM 366 (514)
Q Consensus 296 ----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~ 366 (514)
..++..+...|...|++++|...+++..+. +..+. ..++..+...+...|++++|...+++..+...-..+
T Consensus 223 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 302 (406)
T 3sf4_A 223 KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELND 302 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCC
Confidence 236777788888888888888888887652 11111 456777788888899999999998887754211121
Q ss_pred ----hHHHHHHHHHHHhcCCHHHHHHHHHhCC-----C--CC-CHHHHHHHHHHHHhcCC
Q 046312 367 ----RIHYHTMADILARAGHLKEAYTFIMNMP-----F--QP-NPIVLRALLSASSIHDA 414 (514)
Q Consensus 367 ----~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~--~p-~~~~~~~l~~~~~~~~~ 414 (514)
..++..+...|.+.|++++|.+.+++.. . .+ ...++..+...+...|+
T Consensus 303 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 362 (406)
T 3sf4_A 303 RIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGL 362 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhH
Confidence 4567788888999999999999888763 1 11 13444455555555554
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.46 E-value=3.6e-12 Score=119.52 Aligned_cols=127 Identities=10% Similarity=-0.053 Sum_probs=60.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCc-----CC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----HH
Q 046312 267 LGTALIDMYAKCGAVGCARLLFSRMEE-----IN----VWTWSAMILGLAQHGYAEEALELFSNMKNSSI-SPN----YV 332 (514)
Q Consensus 267 ~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~~ 332 (514)
++..+...|...|++++|...+++..+ ++ ..++..+...+...|++++|...+++..+... ..+ ..
T Consensus 185 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 264 (338)
T 3ro2_A 185 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 264 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHH
Confidence 444455555555555555555554432 11 12445555555566666666666555543100 001 23
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCC----chHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 046312 333 TFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKP----MRIHYHTMADILARAGHLKEAYTFIMNM 393 (514)
Q Consensus 333 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~~ 393 (514)
++..+...+...|++++|...+++..+...-.. ...++..+...|.+.|++++|...++++
T Consensus 265 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 329 (338)
T 3ro2_A 265 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 329 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 344455555555555555555555443210000 1224444555555555555555555543
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.44 E-value=1.5e-11 Score=104.67 Aligned_cols=166 Identities=8% Similarity=0.008 Sum_probs=132.5
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHH
Q 046312 295 NVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMA 374 (514)
Q Consensus 295 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li 374 (514)
+...|..+...|...|++++|+..|++.++.. +-+..++..+..++...|++++|...+...... .+.+...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHH
Confidence 45677778888888888888888888887743 234667777888888888888888888888764 133355666777
Q ss_pred HHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCH
Q 046312 375 DILARAGHLKEAYTFIMNMP--FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMW 452 (514)
Q Consensus 375 ~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 452 (514)
..+...++++.|.+.+.+.. .+.+...+..+...+...|+ +++|.+.++++.+.+|.++.++..++.+|.+.|++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~---~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~ 157 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGE---HDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLR 157 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCC---chhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCH
Confidence 77888888888888888775 34467778888888899999 99999999999999999888899999999999999
Q ss_pred HHHHHHHHHHHhCC
Q 046312 453 EKVSNVRRFMKNVG 466 (514)
Q Consensus 453 ~~A~~~~~~m~~~~ 466 (514)
++|.+.|++..+..
T Consensus 158 ~~A~~~~~~al~~~ 171 (184)
T 3vtx_A 158 DEAVKYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCC
Confidence 99999999887653
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.1e-11 Score=119.14 Aligned_cols=195 Identities=14% Similarity=0.008 Sum_probs=106.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCc-----C-----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----H
Q 046312 267 LGTALIDMYAKCGAVGCARLLFSRMEE-----I-----NVWTWSAMILGLAQHGYAEEALELFSNMKNSSI-SPN----Y 331 (514)
Q Consensus 267 ~~~~li~~~~~~g~~~~A~~~~~~~~~-----~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~ 331 (514)
++..+...|...|++++|...+++..+ + ...+++.+...|...|++++|...+++..+... .++ .
T Consensus 145 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 224 (383)
T 3ulq_A 145 FFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMG 224 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHH
Confidence 444444555555555555554444332 1 123455555666666666666666666554210 011 1
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHhh---CC-CCchHHHHHHHHHHHhcCCHHHHHHHHHhCC------CCCC-HH
Q 046312 332 VTFLGVLCACNHAGMVEDGYRYFHEMEHVH---GI-KPMRIHYHTMADILARAGHLKEAYTFIMNMP------FQPN-PI 400 (514)
Q Consensus 332 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~------~~p~-~~ 400 (514)
.++..+..+|...|++++|...+++..+.. +. +....++..+...|.+.|++++|.+.+++.. ..|. ..
T Consensus 225 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 304 (383)
T 3ulq_A 225 RTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLS 304 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 345556666666677777776666665410 11 1224456666666777777777777666653 1111 12
Q ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHHHHhcC--CCCCchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 046312 401 VLRALLSASSIHDAKYQDGVGNEVRRRLLELE--PRGSQNLVIVANKYAEVGMWEKVSNVRRFMKN 464 (514)
Q Consensus 401 ~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 464 (514)
.+..+...+...|+ .+...+++..+.+.+ |.....+..++.+|...|++++|..++++..+
T Consensus 305 ~~~~l~~~~~~~~~---~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 305 EFEFLKSLYLSGPD---EEAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHTSSCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCc---HHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 23445555555555 444444444444442 22233566788888888888888888887763
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.42 E-value=2.8e-12 Score=126.55 Aligned_cols=191 Identities=12% Similarity=0.001 Sum_probs=153.5
Q ss_pred chhHHHHHHHHHHhcCCH-HHHHHHHHhcCc---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 046312 264 NCQLGTALIDMYAKCGAV-GCARLLFSRMEE---INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLC 339 (514)
Q Consensus 264 ~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 339 (514)
+...+..+...|...|++ ++|++.|++..+ .+...|..+...|...|++++|...|++..+. .|+...+..+..
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg~ 178 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLSM 178 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHHH
Confidence 455555566666666666 666666665543 34667788888888888888888888888874 466777888888
Q ss_pred HHhcc---------CcHHHHHHHHHHHHHhhCCCC-chHHHHHHHHHHHhc--------CCHHHHHHHHHhCC-CCC---
Q 046312 340 ACNHA---------GMVEDGYRYFHEMEHVHGIKP-MRIHYHTMADILARA--------GHLKEAYTFIMNMP-FQP--- 397 (514)
Q Consensus 340 ~~~~~---------~~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~--------g~~~~A~~~~~~~~-~~p--- 397 (514)
++... |++++|...+++..+. .| +...|..+..+|... |++++|.+.|+++. ..|
T Consensus 179 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~ 255 (474)
T 4abn_A 179 VLRQLQTDSGDEHSRHVMDSVRQAKLAVQM---DVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKAS 255 (474)
T ss_dssp HHTTCCCSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGG
T ss_pred HHHHhccCChhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcc
Confidence 88888 9999999999998875 44 467788888888888 88999999998886 445
Q ss_pred -CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHH
Q 046312 398 -NPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFM 462 (514)
Q Consensus 398 -~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 462 (514)
+...|..+...+...|+ +++|.+.++.+.+++|+++.++..++.++...|++++|.+.++++
T Consensus 256 ~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 256 SNPDLHLNRATLHKYEES---YGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp GCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred cCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 78889999999999999 999999999999999999888999999999999999998765543
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.40 E-value=1.2e-10 Score=118.27 Aligned_cols=428 Identities=7% Similarity=-0.034 Sum_probs=245.2
Q ss_pred HHHHHHhCCCCChHHHHHHHHhcccCCCCChHHHHHHHcccCC--CCCcccHHHHHHHHHhCCC---chHHHHHHHHHHH
Q 046312 48 HAQIQVSGLQNDAQILKELVRFCTLSSSKNLTYARSILCNYVN--DSVPIPWNNLIRGYAWSDR---PREAVWVFIDMKR 122 (514)
Q Consensus 48 ~~~~~~~g~~~~~~~~~~ll~~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~ 122 (514)
++.-+... +-|...|..++..+. +.+.++.++.+|+++.. +.....|...+..-.+.|+ ++.+..+|++...
T Consensus 55 lE~~l~~n-p~d~~~W~~yi~~~~--~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~ 131 (679)
T 4e6h_A 55 LNDMIEEQ-PTDIFLYVKLLKHHV--SLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLS 131 (679)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTC
T ss_pred HHHHHHHC-cCCHHHHHHHHHHHH--hcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHH
Confidence 34444444 458889999999988 88899999999988753 2344567777888888888 8999999999877
Q ss_pred cC-CCCCcchHHHHHHHHhccCCc--------hHHHHHHHHHHH-hCC-CCC-cchHHHHHHHHHc---------CCCHH
Q 046312 123 RG-IKPTEFTYPFVLKACAEISGL--------NEGMQVQANVTK-SGL-DSD-VYTNNNLVRFYGS---------CRRKR 181 (514)
Q Consensus 123 ~~-~~p~~~~~~~ll~~~~~~g~~--------~~a~~~~~~~~~-~~~-~~~-~~~~~~li~~~~~---------~~~~~ 181 (514)
.. .+|+...|..-+....+.++. +.+.++|+..+. .|. .++ ...|...+..... .++++
T Consensus 132 ~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~ 211 (679)
T 4e6h_A 132 KELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQ 211 (679)
T ss_dssp SSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHH
T ss_pred hcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHH
Confidence 53 137777777777766665554 234467766554 355 453 4577777765442 23466
Q ss_pred HHHHHhhccCCC---Ch-hhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHH
Q 046312 182 DACKVFDDMCER---SV-VSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLI 257 (514)
Q Consensus 182 ~A~~~~~~~~~~---~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 257 (514)
.+..+|++...- +. .+|......-...+. ..+.+++.+. ..+++.|...+.++.
T Consensus 212 ~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e~---------------------~~~y~~Ar~~~~e~~ 269 (679)
T 4e6h_A 212 YIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQ-LTARRHIGEL---------------------SAQYMNARSLYQDWL 269 (679)
T ss_dssp HHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCT-TTHHHHHHHH---------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCc-chHHHHHHHh---------------------hHHHHHHHHHHHHHH
Confidence 777888777431 11 223222211111011 0111111110 011222222222221
Q ss_pred Hh--CCC---------------C--------chhHHHHHHHHHHhcC-------CHHHHHHHHHhcCc---CCHHHHHHH
Q 046312 258 ER--GTV---------------L--------NCQLGTALIDMYAKCG-------AVGCARLLFSRMEE---INVWTWSAM 302 (514)
Q Consensus 258 ~~--~~~---------------~--------~~~~~~~li~~~~~~g-------~~~~A~~~~~~~~~---~~~~~~~~l 302 (514)
.. ++. | ....|...+..--..+ ..+.+..+|++... .+...|...
T Consensus 270 ~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~y 349 (679)
T 4e6h_A 270 NITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNM 349 (679)
T ss_dssp HHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 11 100 0 0123333333322221 12234455655543 355677777
Q ss_pred HHHHHHcCChHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhC--------CCC--------
Q 046312 303 ILGLAQHGYAEEAL-ELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHG--------IKP-------- 365 (514)
Q Consensus 303 i~~~~~~~~~~~a~-~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--------~~p-------- 365 (514)
+..+...|+.++|. .+|++.... .+.+...+...+......|+++.|..+|+.+..... -.|
T Consensus 350 a~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~ 428 (679)
T 4e6h_A 350 ANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQ 428 (679)
T ss_dssp HHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhh
Confidence 77777777777775 788777763 233444455566667777888888888887775310 013
Q ss_pred ----chHHHHHHHHHHHhcCCHHHHHHHHHhCCCC-C--CHHHHHHHHHHHHh-cCCCCcchHHHHHHHHHHhcCCCCCc
Q 046312 366 ----MRIHYHTMADILARAGHLKEAYTFIMNMPFQ-P--NPIVLRALLSASSI-HDAKYQDGVGNEVRRRLLELEPRGSQ 437 (514)
Q Consensus 366 ----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-p--~~~~~~~l~~~~~~-~~~~~~~~~a~~~~~~~~~~~p~~~~ 437 (514)
...+|...++...+.|..+.|..+|.++... | ....|...+..-.. .++ .+.|..+++.+.+..|+++.
T Consensus 429 ~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d---~e~Ar~ife~~Lk~~p~~~~ 505 (679)
T 4e6h_A 429 LKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKD---TKTACKVLELGLKYFATDGE 505 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSC---CHHHHHHHHHHHHHHTTCHH
T ss_pred hccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHCCCchH
Confidence 1235666677667777788888888776411 1 22233222211112 344 77788888888887777776
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CCceeEEEECCeEEEEEecccCCcChHHHHHHHHHHHHHhhh
Q 046312 438 NLVIVANKYAEVGMWEKVSNVRRFMKNVGLKK-MKGMSWVELGGSIHRFYSGYDSQVELAGIYQILETLNLHMKV 511 (514)
Q Consensus 438 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~ 511 (514)
.+...+......|+.+.|..+|++......++ .....| ..++.-...+|..+.+..+.+++.+..++
T Consensus 506 ~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw-------~~~~~fE~~~G~~~~~~~v~~R~~~~~P~ 573 (679)
T 4e6h_A 506 YINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIF-------QKVIFFESKVGSLNSVRTLEKRFFEKFPE 573 (679)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHH-------HHHHHHHHHTCCSHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHH-------HHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 66677777777788888888888776654421 222334 34455566777777888888887776654
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.39 E-value=3.9e-09 Score=107.21 Aligned_cols=398 Identities=8% Similarity=-0.013 Sum_probs=271.7
Q ss_pred hhhHHHHHHHhh---cChhHHHHHHHHHHHhCCCCChHHHHHHHHhcccCCCCC---hHHHHHHHcccCC-C---CCccc
Q 046312 27 KARQCLSFLKLC---CSKKHLYQIHAQIQVSGLQNDAQILKELVRFCTLSSSKN---LTYARSILCNYVN-D---SVPIP 96 (514)
Q Consensus 27 ~~~~~~~ll~~~---~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~g~---~~~A~~~~~~~~~-~---~~~~~ 96 (514)
+..+...++..+ +....++.+++.+... ++.....|...+..-. +.|+ ++.+..+|++... . +++..
T Consensus 65 d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~--~~~~~~~~~~v~~lfeRal~~~~~~~sv~L 141 (679)
T 4e6h_A 65 DIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEF--DKMEELDAAVIEPVLARCLSKELGNNDLSL 141 (679)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHH--TC--CCCHHHHHHHHHHHTCSSSCCCCHHH
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHH--hhCCcchHHHHHHHHHHHHHhcCCCCCHHH
Confidence 334444444443 5678888999988876 5677889999999888 8888 9999999998764 3 67777
Q ss_pred HHHHHHHHHhCCCc--------hHHHHHHHHHHH-cCC-CCCc-chHHHHHHHHhc---------cCCchHHHHHHHHHH
Q 046312 97 WNNLIRGYAWSDRP--------REAVWVFIDMKR-RGI-KPTE-FTYPFVLKACAE---------ISGLNEGMQVQANVT 156 (514)
Q Consensus 97 ~~~li~~~~~~g~~--------~~a~~~~~~m~~-~~~-~p~~-~~~~~ll~~~~~---------~g~~~~a~~~~~~~~ 156 (514)
|...+....+.++. +...++|+.... .|. .|+. ..|...+..... .++++.+.++|+.++
T Consensus 142 W~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL 221 (679)
T 4e6h_A 142 WLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLL 221 (679)
T ss_dssp HHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHH
Confidence 88887766665554 334578887654 465 5544 456666655432 345678888998887
Q ss_pred HhCCCCC--cchHHHHHHHHHc-------------CCCHHHHHHHhhcc-------C----C----------C--C----
Q 046312 157 KSGLDSD--VYTNNNLVRFYGS-------------CRRKRDACKVFDDM-------C----E----------R--S---- 194 (514)
Q Consensus 157 ~~~~~~~--~~~~~~li~~~~~-------------~~~~~~A~~~~~~~-------~----~----------~--~---- 194 (514)
.. +.. ..+|......-.. ..+++.|...+.++ . . | +
T Consensus 222 ~i--P~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~ 299 (679)
T 4e6h_A 222 CQ--PMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDV 299 (679)
T ss_dssp TS--CCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCH
T ss_pred hC--ccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHH
Confidence 42 222 1233211111100 11233344444331 1 0 0 0
Q ss_pred --hhhHHHHHHHHHhCC-------ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHH-HHHHHHHHhCCCCc
Q 046312 195 --VVSWNVIITVCVENL-------WLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGK-WVHLQLIERGTVLN 264 (514)
Q Consensus 195 --~~~~~~li~~~~~~~-------~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~-~~~~~~~~~~~~~~ 264 (514)
...|...+..--..+ ..+.+..+|++.... ++-+...|...+..+...|+.+.|. .+++...... +.+
T Consensus 300 ~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~-P~s 377 (679)
T 4e6h_A 300 QQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI-PNS 377 (679)
T ss_dssp HHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC-TTC
T ss_pred HHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC-CCC
Confidence 134555555433322 123456778888776 3446777777788888889999996 9999998754 446
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCc-------------CC------------HHHHHHHHHHHHHcCChHHHHHHH
Q 046312 265 CQLGTALIDMYAKCGAVGCARLLFSRMEE-------------IN------------VWTWSAMILGLAQHGYAEEALELF 319 (514)
Q Consensus 265 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------------~~------------~~~~~~li~~~~~~~~~~~a~~~~ 319 (514)
...+..++....+.|++++|.++|+++.+ |+ ...|...+....+.|+.+.|..+|
T Consensus 378 ~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf 457 (679)
T 4e6h_A 378 AVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIF 457 (679)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 67778889999999999999999998764 21 236888888888899999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhc-cCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC
Q 046312 320 SNMKNSSISPNYVTFLGVLCACNH-AGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP-FQP 397 (514)
Q Consensus 320 ~~m~~~g~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p 397 (514)
.+.++.-.......|...+..-.+ .++.+.|..+|+...+.+ +-+...+...++.....|+.+.|..+|++.. ..|
T Consensus 458 ~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~--p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~ 535 (679)
T 4e6h_A 458 GKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYF--ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKIS 535 (679)
T ss_dssp HHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSS
T ss_pred HHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcC
Confidence 999886111223333332222223 356899999999999864 3445667788888888999999999999986 333
Q ss_pred ----CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCC
Q 046312 398 ----NPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGS 436 (514)
Q Consensus 398 ----~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 436 (514)
....|..++.--...|+ .+.+..+.+++.+..|+++
T Consensus 536 ~~~~~~~lw~~~~~fE~~~G~---~~~~~~v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 536 DSHLLKMIFQKVIFFESKVGS---LNSVRTLEKRFFEKFPEVN 575 (679)
T ss_dssp STTHHHHHHHHHHHHHHHTCC---SHHHHHHHHHHHHHSTTCC
T ss_pred CHHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCc
Confidence 34778888888899999 9999999999999999864
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.38 E-value=2.9e-12 Score=118.93 Aligned_cols=242 Identities=12% Similarity=0.061 Sum_probs=122.7
Q ss_pred hhhHHHHHHHHHhCCChhHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHh------CC
Q 046312 195 VVSWNVIITVCVENLWLGEAVGYFVKMKDL-------GFEPDETTMLVVLSACTELGNLSLGKWVHLQLIER------GT 261 (514)
Q Consensus 195 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-------~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~------~~ 261 (514)
..++..+...+...|++++|..+++++.+. ........+..+...+...|++++|...++.+.+. +.
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 456777888888888888888888887763 12233456666777777777888877777776654 11
Q ss_pred -CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 046312 262 -VLNCQLGTALIDMYAKCGAVGCARLLFSRMEEINVWTWSAMILGLAQHGYAEEALELFSNMKNSSISP-NYVTFLGVLC 339 (514)
Q Consensus 262 -~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~ 339 (514)
.....++..+...|...|++++|...|++..+.. +.... +-.| ....+..+..
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~------------------------~~~~~-~~~~~~~~~~~~la~ 161 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR------------------------EKVLG-KDHPDVAKQLNNLAL 161 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH------------------------HHHHC-TTCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH------------------------HHhcC-CCChHHHHHHHHHHH
Confidence 1223445555555556666666555555443200 00000 1111 1223334444
Q ss_pred HHhccCcHHHHHHHHHHHHHhh-----CCCC-chHHHHHHHHHHHhcCCHHHHHHHHHhCC----------CCCC-----
Q 046312 340 ACNHAGMVEDGYRYFHEMEHVH-----GIKP-MRIHYHTMADILARAGHLKEAYTFIMNMP----------FQPN----- 398 (514)
Q Consensus 340 ~~~~~~~~~~a~~~~~~~~~~~-----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~----------~~p~----- 398 (514)
.+...|++++|..+++++.+.. +..| ...++..+...|.+.|++++|.+.++++. ..+.
T Consensus 162 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 241 (311)
T 3nf1_A 162 LCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIW 241 (311)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHH
Confidence 4444445554444444444320 0011 12334444455555555555555554432 0000
Q ss_pred --HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 046312 399 --PIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKN 464 (514)
Q Consensus 399 --~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 464 (514)
...+..+...+...+. +..+...++......|....++..++.+|.+.|++++|.+++++..+
T Consensus 242 ~~~~~~~~~~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 242 MHAEEREECKGKQKDGTS---FGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp HHHHHHHHC-------CC---SCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCchhhHHH---HHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1111112222233334 55555566666666666667788888999999999999988887764
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.38 E-value=4.7e-11 Score=114.59 Aligned_cols=228 Identities=7% Similarity=-0.038 Sum_probs=149.4
Q ss_pred HHHHHhCCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCC------CchhHHHH
Q 046312 202 ITVCVENLWLGEAVGYFVKMKDL----GFEP-DETTMLVVLSACTELGNLSLGKWVHLQLIERGTV------LNCQLGTA 270 (514)
Q Consensus 202 i~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~------~~~~~~~~ 270 (514)
...+...|++++|...|++..+. +-.+ ...++..+...+...|+++.|...+++..+.... ....+++.
T Consensus 110 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 189 (383)
T 3ulq_A 110 GMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSL 189 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 34455566666666666666542 1111 1245555666666666666666666665543111 11345666
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCc-----CC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHC----CC-CCCHHHHHH
Q 046312 271 LIDMYAKCGAVGCARLLFSRMEE-----IN----VWTWSAMILGLAQHGYAEEALELFSNMKNS----SI-SPNYVTFLG 336 (514)
Q Consensus 271 li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~-~p~~~~~~~ 336 (514)
+...|...|++++|...|++..+ ++ ..++..+...|...|++++|...+++..+. +. +....++..
T Consensus 190 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 269 (383)
T 3ulq_A 190 FATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFL 269 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHH
Confidence 77777777777777777776653 11 246777888888888888888888887762 22 223556777
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHhhCC--CC-chHHHHHHHHHHHhcCC---HHHHHHHHHhCCCCCC-HHHHHHHHHHH
Q 046312 337 VLCACNHAGMVEDGYRYFHEMEHVHGI--KP-MRIHYHTMADILARAGH---LKEAYTFIMNMPFQPN-PIVLRALLSAS 409 (514)
Q Consensus 337 ll~~~~~~~~~~~a~~~~~~~~~~~~~--~p-~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~p~-~~~~~~l~~~~ 409 (514)
+..++...|++++|...+++..+...- .| ....+..+...+...|+ .++|+.++++....|+ ...+..+...|
T Consensus 270 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y 349 (383)
T 3ulq_A 270 ITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYY 349 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 888888888888888888887653111 11 12235567777778888 8888888888863333 35667788888
Q ss_pred HhcCCCCcchHHHHHHHHHHhcC
Q 046312 410 SIHDAKYQDGVGNEVRRRLLELE 432 (514)
Q Consensus 410 ~~~~~~~~~~~a~~~~~~~~~~~ 432 (514)
...|+ +++|...++++.++.
T Consensus 350 ~~~g~---~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 350 HERKN---FQKASAYFLKVEQVR 369 (383)
T ss_dssp HHTTC---HHHHHHHHHHHHHHH
T ss_pred HHCCC---HHHHHHHHHHHHHHH
Confidence 88898 888888888887754
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.36 E-value=5.2e-10 Score=103.78 Aligned_cols=219 Identities=8% Similarity=-0.047 Sum_probs=142.9
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHh-------ccCCh-------HHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 046312 212 GEAVGYFVKMKDLGFEPDETTMLVVLSACT-------ELGNL-------SLGKWVHLQLIERGTVLNCQLGTALIDMYAK 277 (514)
Q Consensus 212 ~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~-------~~g~~-------~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 277 (514)
++|..+|++..... +-+...|..+...+. +.|++ ++|..++++.++.-.+-+...+..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 46666676666642 334455555555443 34665 6777777777763112345567777777777
Q ss_pred cCCHHHHHHHHHhcCc--C-CHH-HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-hccCcHHHHHH
Q 046312 278 CGAVGCARLLFSRMEE--I-NVW-TWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCAC-NHAGMVEDGYR 352 (514)
Q Consensus 278 ~g~~~~A~~~~~~~~~--~-~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~-~~~~~~~~a~~ 352 (514)
.|++++|..+|+++.+ | +.. .|..++..+.+.|++++|..+|++..+.. +++...|....... ...|+.+.|..
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 7777777777777664 3 233 67777777777888888888888877643 22333343332222 23578888888
Q ss_pred HHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC----CCC--CHHHHHHHHHHHHhcCCCCcchHHHHHHH
Q 046312 353 YFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP----FQP--NPIVLRALLSASSIHDAKYQDGVGNEVRR 426 (514)
Q Consensus 353 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~p--~~~~~~~l~~~~~~~~~~~~~~~a~~~~~ 426 (514)
+|++..+.+ +-+...|..++..+.+.|+.++|..+|+++. ..| ....|..++......|+ .+.+..+++
T Consensus 191 ~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~---~~~a~~~~~ 265 (308)
T 2ond_A 191 IFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGD---LASILKVEK 265 (308)
T ss_dssp HHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSC---HHHHHHHHH
T ss_pred HHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCC---HHHHHHHHH
Confidence 888877642 2346677777777778888888888887774 133 35667777777777788 888888888
Q ss_pred HHHhcCCCCCc
Q 046312 427 RLLELEPRGSQ 437 (514)
Q Consensus 427 ~~~~~~p~~~~ 437 (514)
.+.+..|++..
T Consensus 266 ~a~~~~p~~~~ 276 (308)
T 2ond_A 266 RRFTAFREEYE 276 (308)
T ss_dssp HHHHHTTTTTS
T ss_pred HHHHHcccccc
Confidence 88888877553
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.34 E-value=4.2e-10 Score=104.35 Aligned_cols=83 Identities=13% Similarity=-0.030 Sum_probs=51.9
Q ss_pred cCCHHHHHHHHHhcCc---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHhccCcHHHHH
Q 046312 278 CGAVGCARLLFSRMEE---INVWTWSAMILGLAQHGYAEEALELFSNMKNSS-ISPN--YVTFLGVLCACNHAGMVEDGY 351 (514)
Q Consensus 278 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~--~~~~~~ll~~~~~~~~~~~a~ 351 (514)
.|++++|..+|++..+ .+...|..++..+.+.|++++|..+|++..... +.|+ ...|..++......|+.+.|.
T Consensus 182 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~ 261 (308)
T 2ond_A 182 SKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASIL 261 (308)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 4555555555555543 245566666666667777777777777776642 3442 445666666666677777777
Q ss_pred HHHHHHHHh
Q 046312 352 RYFHEMEHV 360 (514)
Q Consensus 352 ~~~~~~~~~ 360 (514)
.+++++.+.
T Consensus 262 ~~~~~a~~~ 270 (308)
T 2ond_A 262 KVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777777654
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.33 E-value=2.2e-09 Score=102.39 Aligned_cols=260 Identities=11% Similarity=-0.057 Sum_probs=166.9
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCCHH----HHHHHHHHHhccCChHHHHHHHHHHHHhCCC---C--chhHHHHHH
Q 046312 202 ITVCVENLWLGEAVGYFVKMKDLGFEPDET----TMLVVLSACTELGNLSLGKWVHLQLIERGTV---L--NCQLGTALI 272 (514)
Q Consensus 202 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~----t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~---~--~~~~~~~li 272 (514)
...+...|++++|...+++........+.. .+..+...+...|++++|...+++..+.... + ...++..+.
T Consensus 21 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 100 (373)
T 1hz4_A 21 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 100 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 344556677777777777666543112221 3444455566677777777777666543111 1 122345566
Q ss_pred HHHHhcCCHHHHHHHHHhcCc-------C----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC--C--CHHHHHHH
Q 046312 273 DMYAKCGAVGCARLLFSRMEE-------I----NVWTWSAMILGLAQHGYAEEALELFSNMKNSSIS--P--NYVTFLGV 337 (514)
Q Consensus 273 ~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~--p--~~~~~~~l 337 (514)
..+...|++++|...+++..+ + ....+..+...+...|++++|...+++....... + ...++..+
T Consensus 101 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 180 (373)
T 1hz4_A 101 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 180 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHH
Confidence 677777888888777776543 1 1234556677788888888888888887763211 1 23456677
Q ss_pred HHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHH-----HHHHHHHhcCCHHHHHHHHHhCC-CCCC-----HHHHHHHH
Q 046312 338 LCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYH-----TMADILARAGHLKEAYTFIMNMP-FQPN-----PIVLRALL 406 (514)
Q Consensus 338 l~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~-----~li~~~~~~g~~~~A~~~~~~~~-~~p~-----~~~~~~l~ 406 (514)
...+...|++++|...+++......-......+. ..+..+...|++++|...+++.. ..|. ...+..+.
T Consensus 181 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la 260 (373)
T 1hz4_A 181 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA 260 (373)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHH
Confidence 7788888999999998888775421111111111 23344678899999999998875 2221 23456777
Q ss_pred HHHHhcCCCCcchHHHHHHHHHHhcCCCC------CchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 046312 407 SASSIHDAKYQDGVGNEVRRRLLELEPRG------SQNLVIVANKYAEVGMWEKVSNVRRFMKN 464 (514)
Q Consensus 407 ~~~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 464 (514)
..+...|+ .++|...++.+.+..+.. ...+..++.++...|+.++|...+++...
T Consensus 261 ~~~~~~g~---~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 261 RAQILLGE---FEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHTTC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHcCC---HHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 88888898 888888888876654321 12566788889999999999999988764
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.32 E-value=8.8e-11 Score=99.86 Aligned_cols=166 Identities=10% Similarity=-0.022 Sum_probs=106.1
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCc---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 046312 264 NCQLGTALIDMYAKCGAVGCARLLFSRMEE---INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCA 340 (514)
Q Consensus 264 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 340 (514)
+..+|..+...|.+.|++++|++.|++..+ .+..+|..+...|.+.|++++|...+....... +-+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 445566666666666666666666666553 345566666666777777777777777666542 2234455555566
Q ss_pred HhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCCCcc
Q 046312 341 CNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP--FQPNPIVLRALLSASSIHDAKYQD 418 (514)
Q Consensus 341 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~~ 418 (514)
+...++++.+...+.+.... .+.+...+..+...|.+.|++++|++.|++.. .+.+..+|..+...+...|+ +
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~---~ 157 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGL---R 157 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---H
T ss_pred HHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCC---H
Confidence 66677777777777776653 12235566666777777777777777777664 23355667777777777777 7
Q ss_pred hHHHHHHHHHHhcCCCC
Q 046312 419 GVGNEVRRRLLELEPRG 435 (514)
Q Consensus 419 ~~a~~~~~~~~~~~p~~ 435 (514)
++|.+.++++.+++|++
T Consensus 158 ~~A~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 158 DEAVKYFKKALEKEEKK 174 (184)
T ss_dssp HHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHhCCccC
Confidence 77777777777776654
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.7e-11 Score=113.71 Aligned_cols=244 Identities=12% Similarity=0.047 Sum_probs=140.2
Q ss_pred CcchHHHHHHHHHcCCCHHHHHHHhhccCC--------C---ChhhHHHHHHHHHhCCChhHHHHHHHHHHHC------C
Q 046312 163 DVYTNNNLVRFYGSCRRKRDACKVFDDMCE--------R---SVVSWNVIITVCVENLWLGEAVGYFVKMKDL------G 225 (514)
Q Consensus 163 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--------~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~ 225 (514)
+..++..+...+...|++++|..+++++.+ . ....+..+...+...|++++|...+++..+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 456788899999999999999999988843 1 2457888899999999999999999998764 2
Q ss_pred CCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHhC------CCC-chhHHHHHHHHHHhcCCHHHHHHHHHhcCcCCHH
Q 046312 226 FEP-DETTMLVVLSACTELGNLSLGKWVHLQLIERG------TVL-NCQLGTALIDMYAKCGAVGCARLLFSRMEEINVW 297 (514)
Q Consensus 226 ~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~------~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 297 (514)
-.| ...++..+...+...|++++|...++++.+.. ..| ...++..+...|...|++++|.++|+++.+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--- 182 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI--- 182 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH---
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---
Confidence 223 35678888999999999999999999887651 111 2334455555555555555555555444321
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHhh------CCCCc----
Q 046312 298 TWSAMILGLAQHGYAEEALELFSNMKNSSISPN-YVTFLGVLCACNHAGMVEDGYRYFHEMEHVH------GIKPM---- 366 (514)
Q Consensus 298 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------~~~p~---- 366 (514)
++... .+..|. ..++..+..++...|++++|..+++++.+.. ...+.
T Consensus 183 ---------------------~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 240 (311)
T 3nf1_A 183 ---------------------YQTKL-GPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPI 240 (311)
T ss_dssp ---------------------HHHTS-CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCH
T ss_pred ---------------------HHHHh-CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHH
Confidence 00000 011111 2234444445555555555555555444310 00111
Q ss_pred ---hHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCC
Q 046312 367 ---RIHYHTMADILARAGHLKEAYTFIMNMP-FQP-NPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPR 434 (514)
Q Consensus 367 ---~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~ 434 (514)
...+..+...+...+.+.+|...++... ..| +..++..+...|...|+ +++|.+.++.+.++.|.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 241 WMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGK---FEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp HHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHhhc
Confidence 1112222223334444555555555554 222 34566677777777777 77777777777776553
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.31 E-value=4.5e-11 Score=117.92 Aligned_cols=212 Identities=11% Similarity=-0.077 Sum_probs=104.6
Q ss_pred chHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCCc-hHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCHHHHHHHhh
Q 046312 110 PREAVWVFIDMKRRGIKPTEFTYPFVLKACAEISGL-NEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKRDACKVFD 188 (514)
Q Consensus 110 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~ 188 (514)
++++++.+++.... .+.+...+..+...+...|++ ++|++.+++..+.. +.+..+|..+..+|...|++++|...|+
T Consensus 84 ~~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34455555544332 122344555555666666666 66666666665553 2234444445555555555555544444
Q ss_pred ccCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc---------CChHHHHHHHHHHHHh
Q 046312 189 DMCERSVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTEL---------GNLSLGKWVHLQLIER 259 (514)
Q Consensus 189 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~---------g~~~~a~~~~~~~~~~ 259 (514)
+. .+. .|+...+..+...+... |++++|...+++..+.
T Consensus 162 ~a-------------------------------l~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 208 (474)
T 4abn_A 162 GA-------------------------------LTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM 208 (474)
T ss_dssp HH-------------------------------HTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HH-------------------------------Hhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh
Confidence 44 332 23333344444444444 4444444444444444
Q ss_pred CCCCchhHHHHHHHHHHhc--------CCHHHHHHHHHhcCc--C----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 046312 260 GTVLNCQLGTALIDMYAKC--------GAVGCARLLFSRMEE--I----NVWTWSAMILGLAQHGYAEEALELFSNMKNS 325 (514)
Q Consensus 260 ~~~~~~~~~~~li~~~~~~--------g~~~~A~~~~~~~~~--~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 325 (514)
.. .+...+..+..+|... |++++|+..|++..+ | +...|..+..+|...|++++|...|++..+.
T Consensus 209 ~p-~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 287 (474)
T 4abn_A 209 DV-LDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL 287 (474)
T ss_dssp CT-TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CC-CCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 31 1334444444444444 455555555554432 2 4455555566666666666666666665553
Q ss_pred CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 046312 326 SISPNYVTFLGVLCACNHAGMVEDGYRYFHEME 358 (514)
Q Consensus 326 g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 358 (514)
. +-+...+..+..++...|++++|...+.++.
T Consensus 288 ~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~~ 319 (474)
T 4abn_A 288 D-PAWPEPQQREQQLLEFLSRLTSLLESKGKTK 319 (474)
T ss_dssp C-TTCHHHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred C-CCCHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 2 1223445555555566666666665554443
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.5e-10 Score=110.79 Aligned_cols=221 Identities=8% Similarity=-0.014 Sum_probs=123.4
Q ss_pred hccCChHHHHHHHHHHHHhCC--C---CchhHHHHHHHHHHhcCCHHHHHHHHHhcCc-----C-----CHHHHHHHHHH
Q 046312 241 TELGNLSLGKWVHLQLIERGT--V---LNCQLGTALIDMYAKCGAVGCARLLFSRMEE-----I-----NVWTWSAMILG 305 (514)
Q Consensus 241 ~~~g~~~~a~~~~~~~~~~~~--~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~-----~~~~~~~li~~ 305 (514)
...|++++|...+++..+... . ....++..+...|...|+++.|...+++..+ + ...+++.+...
T Consensus 112 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~ 191 (378)
T 3q15_A 112 FDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGN 191 (378)
T ss_dssp HHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHH
T ss_pred HHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHH
Confidence 344555555555544443210 0 0123444555555555555555555554432 1 12355566666
Q ss_pred HHHcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhh---CCCCchHHHHHHHHHH
Q 046312 306 LAQHGYAEEALELFSNMKNS----SISP-NYVTFLGVLCACNHAGMVEDGYRYFHEMEHVH---GIKPMRIHYHTMADIL 377 (514)
Q Consensus 306 ~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~p~~~~~~~li~~~ 377 (514)
|...|++++|.+.+++..+. +-.+ ...++..+..+|...|++++|...+++..+.. +.+....++..+...+
T Consensus 192 y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 271 (378)
T 3q15_A 192 YDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTL 271 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHH
Confidence 77777777777777666542 1111 12345666677777777777777777766511 1122255666777777
Q ss_pred HhcCCHHHHHHHHHhCC------CCCC-HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcC--CCCCchHHHHHHHHHh
Q 046312 378 ARAGHLKEAYTFIMNMP------FQPN-PIVLRALLSASSIHDAKYQDGVGNEVRRRLLELE--PRGSQNLVIVANKYAE 448 (514)
Q Consensus 378 ~~~g~~~~A~~~~~~~~------~~p~-~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~ 448 (514)
.+.|++++|...+++.. ..|. ...+..+...+...++ .+...+++..+.+.+ |.....+..++..|..
T Consensus 272 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~---~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~ 348 (378)
T 3q15_A 272 CKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVD---ERKIHDLLSYFEKKNLHAYIEACARSAAAVFES 348 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHH
Confidence 77888888877777653 1222 2334444444555555 344444444444432 2223456688888999
Q ss_pred cCCHHHHHHHHHHHHh
Q 046312 449 VGMWEKVSNVRRFMKN 464 (514)
Q Consensus 449 ~g~~~~A~~~~~~m~~ 464 (514)
.|++++|...+++..+
T Consensus 349 ~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 349 SCHFEQAAAFYRKVLK 364 (378)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999888887753
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.29 E-value=2e-10 Score=97.42 Aligned_cols=161 Identities=13% Similarity=0.040 Sum_probs=100.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHH
Q 046312 299 WSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILA 378 (514)
Q Consensus 299 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 378 (514)
|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|..+++++.+. .+.+...+..+...+.
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHH
Confidence 4444455555555555555555554431 223445555555566666666666666666543 1223455556666666
Q ss_pred hcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHH
Q 046312 379 RAGHLKEAYTFIMNMP--FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVS 456 (514)
Q Consensus 379 ~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 456 (514)
..|++++|.+.++++. .+.+...+..+...+...|+ +++|...++.+.+..|.++..+..++.+|...|++++|.
T Consensus 88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGR---FDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCc---HHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence 6666666666666653 33455666666677777777 777777777777777777777777777777778888887
Q ss_pred HHHHHHHhC
Q 046312 457 NVRRFMKNV 465 (514)
Q Consensus 457 ~~~~~m~~~ 465 (514)
..+++..+.
T Consensus 165 ~~~~~~~~~ 173 (186)
T 3as5_A 165 PHFKKANEL 173 (186)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 777776643
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=1.5e-10 Score=118.85 Aligned_cols=161 Identities=14% Similarity=0.140 Sum_probs=125.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCc-hHHHHHH
Q 046312 296 VWTWSAMILGLAQHGYAEEALELFSNMKNSSISPN-YVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPM-RIHYHTM 373 (514)
Q Consensus 296 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l 373 (514)
..+|+.+...|.+.|++++|+..|++.++. .|+ ..++..+..+|.+.|++++|...|++..+. .|+ ...|..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l---~P~~~~a~~nL 83 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI---SPTFADAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHH
Confidence 456777777777888888888888877764 344 566777777888888888888888887764 454 6677788
Q ss_pred HHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCC
Q 046312 374 ADILARAGHLKEAYTFIMNMP-FQP-NPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGM 451 (514)
Q Consensus 374 i~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 451 (514)
..+|.+.|++++|++.|++.. ..| +...|..+...+...|+ +++|.+.++++.+++|+++.++..++.+|...|+
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~---~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~ 160 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGN---IPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCD 160 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCChHHHhhhhhHHHhccc
Confidence 888888888888888887775 344 56778888888888888 8888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHh
Q 046312 452 WEKVSNVRRFMKN 464 (514)
Q Consensus 452 ~~~A~~~~~~m~~ 464 (514)
+++|.+.+++..+
T Consensus 161 ~~~A~~~~~kal~ 173 (723)
T 4gyw_A 161 WTDYDERMKKLVS 173 (723)
T ss_dssp CTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888888877653
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.26 E-value=3.5e-09 Score=101.00 Aligned_cols=222 Identities=9% Similarity=-0.032 Sum_probs=117.5
Q ss_pred HHHHHhCCCchHHHHHHHHHHHcCCCCCcc-----hHHHHHHHHhccCCchHHHHHHHHHHHhCCC-CC----cchHHHH
Q 046312 101 IRGYAWSDRPREAVWVFIDMKRRGIKPTEF-----TYPFVLKACAEISGLNEGMQVQANVTKSGLD-SD----VYTNNNL 170 (514)
Q Consensus 101 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-----~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~l 170 (514)
...+...|++++|...+++..... +++.. .+..+...+...|+++.|...+++....... .+ ..++..+
T Consensus 21 a~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 99 (373)
T 1hz4_A 21 AQVAINDGNPDEAERLAKLALEEL-PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 99 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTC-CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcC-CCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 345566788888888888776643 22211 3445556667778888888887776553211 11 1224455
Q ss_pred HHHHHcCCCHHHHHHHhhccCC----------C-ChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCC--C--CHHHHHH
Q 046312 171 VRFYGSCRRKRDACKVFDDMCE----------R-SVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFE--P--DETTMLV 235 (514)
Q Consensus 171 i~~~~~~~~~~~A~~~~~~~~~----------~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~--p--~~~t~~~ 235 (514)
...+...|++++|...+++... + ....+..+...+...|++++|...+++....... + ...++..
T Consensus 100 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 179 (373)
T 1hz4_A 100 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 179 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHH
Confidence 6666677777777666665511 1 1224445556666667777777766666543211 1 1234555
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhCCCCch-hHHH-----HHHHHHHhcCCHHHHHHHHHhcCcCC-------HHHHHHH
Q 046312 236 VLSACTELGNLSLGKWVHLQLIERGTVLNC-QLGT-----ALIDMYAKCGAVGCARLLFSRMEEIN-------VWTWSAM 302 (514)
Q Consensus 236 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~-----~li~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~l 302 (514)
+...+...|++++|...+++.......++. ..+. ..+..+...|++++|...++...++. ...+..+
T Consensus 180 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~l 259 (373)
T 1hz4_A 180 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 259 (373)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHH
Confidence 555566666666666666665543211111 1111 12233455566666666655554321 1123344
Q ss_pred HHHHHHcCChHHHHHHHHHHH
Q 046312 303 ILGLAQHGYAEEALELFSNMK 323 (514)
Q Consensus 303 i~~~~~~~~~~~a~~~~~~m~ 323 (514)
...+...|++++|...+++..
T Consensus 260 a~~~~~~g~~~~A~~~l~~a~ 280 (373)
T 1hz4_A 260 ARAQILLGEFEPAEIVLEELN 280 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 445555555555555555543
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.24 E-value=1.3e-09 Score=104.31 Aligned_cols=224 Identities=12% Similarity=0.096 Sum_probs=123.0
Q ss_pred HHHhCCChhHHHHHHHHHHHCC-CCCC----HHHHHHHHHHHhccCChHHHHHHHHHHHHhCC-----CC-chhHHHHHH
Q 046312 204 VCVENLWLGEAVGYFVKMKDLG-FEPD----ETTMLVVLSACTELGNLSLGKWVHLQLIERGT-----VL-NCQLGTALI 272 (514)
Q Consensus 204 ~~~~~~~~~~a~~~~~~m~~~~-~~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-----~~-~~~~~~~li 272 (514)
.+...|++++|+..|++..+.. -.++ ..++..+...+...|+++.|...+++..+... .+ ...+++.+.
T Consensus 110 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 189 (378)
T 3q15_A 110 YEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIA 189 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHH
Confidence 3445566666666665554421 0111 23444555555566666666665555544210 10 133455566
Q ss_pred HHHHhcCCHHHHHHHHHhcCc-----CC----HHHHHHHHHHHHHcCChHHHHHHHHHHHH-----CCCCCCHHHHHHHH
Q 046312 273 DMYAKCGAVGCARLLFSRMEE-----IN----VWTWSAMILGLAQHGYAEEALELFSNMKN-----SSISPNYVTFLGVL 338 (514)
Q Consensus 273 ~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~g~~p~~~~~~~ll 338 (514)
.+|...|++++|.+.|++..+ ++ ..++..+...|...|++++|...+++..+ .. +....++..+.
T Consensus 190 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~la 268 (378)
T 3q15_A 190 GNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFGLS 268 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHHHH
Confidence 666666666666666655543 11 23555666666677777777777766655 22 12245566666
Q ss_pred HHHhccCcHHHHHHHHHHHHHhhCCC--C-chHHHHHHHHHHHhcCC---HHHHHHHHHhCCCCCC-HHHHHHHHHHHHh
Q 046312 339 CACNHAGMVEDGYRYFHEMEHVHGIK--P-MRIHYHTMADILARAGH---LKEAYTFIMNMPFQPN-PIVLRALLSASSI 411 (514)
Q Consensus 339 ~~~~~~~~~~~a~~~~~~~~~~~~~~--p-~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~p~-~~~~~~l~~~~~~ 411 (514)
.++.+.|++++|..++++..+...-. + ....+..+...+...|+ ..+|+..+++....|+ ...+..+...|..
T Consensus 269 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~ 348 (378)
T 3q15_A 269 WTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFES 348 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHH
Confidence 66777777777777777766532111 1 12234444455555666 6677777766542222 2345556666777
Q ss_pred cCCCCcchHHHHHHHHHHhc
Q 046312 412 HDAKYQDGVGNEVRRRLLEL 431 (514)
Q Consensus 412 ~~~~~~~~~a~~~~~~~~~~ 431 (514)
.|+ +++|...++++.+.
T Consensus 349 ~g~---~~~A~~~~~~al~~ 365 (378)
T 3q15_A 349 SCH---FEQAAAFYRKVLKA 365 (378)
T ss_dssp TTC---HHHHHHHHHHHHHH
T ss_pred CCC---HHHHHHHHHHHHHH
Confidence 777 77777776666543
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.23 E-value=9e-10 Score=93.23 Aligned_cols=167 Identities=12% Similarity=-0.029 Sum_probs=138.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCc---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 046312 265 CQLGTALIDMYAKCGAVGCARLLFSRMEE---INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCAC 341 (514)
Q Consensus 265 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 341 (514)
...+..+...+...|++++|...|+++.+ .+...+..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 34566777888889999999999998875 357788888889999999999999999988753 34567788888889
Q ss_pred hccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCCCcch
Q 046312 342 NHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP--FQPNPIVLRALLSASSIHDAKYQDG 419 (514)
Q Consensus 342 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~~~ 419 (514)
...|++++|..+++++.+. .+.+...+..+...+...|++++|.+.++++. .+.+...+..+...+...|+ ++
T Consensus 87 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~---~~ 161 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGR---HE 161 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HH
T ss_pred HHhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCC---HH
Confidence 9999999999999998874 23456778888889999999999999998875 44467888889999999999 99
Q ss_pred HHHHHHHHHHhcCCCCCc
Q 046312 420 VGNEVRRRLLELEPRGSQ 437 (514)
Q Consensus 420 ~a~~~~~~~~~~~p~~~~ 437 (514)
.|...++.+.+..|++..
T Consensus 162 ~A~~~~~~~~~~~~~~~~ 179 (186)
T 3as5_A 162 EALPHFKKANELDEGASV 179 (186)
T ss_dssp HHHHHHHHHHHHHHCCCG
T ss_pred HHHHHHHHHHHcCCCchh
Confidence 999999999988887653
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.22 E-value=1e-09 Score=96.74 Aligned_cols=204 Identities=7% Similarity=-0.033 Sum_probs=151.4
Q ss_pred CCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCc--C-CHHHHHHHHH
Q 046312 228 PDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEE--I-NVWTWSAMIL 304 (514)
Q Consensus 228 p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~ 304 (514)
.|...+......+...|++++|...|+..++....++...+..+..++...|++++|+..|++..+ | +...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 356778888888889999999999999999887646777777788999999999999999988775 3 4567888888
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCC-H-------HHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCc---hHHHHHH
Q 046312 305 GLAQHGYAEEALELFSNMKNSSISPN-Y-------VTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPM---RIHYHTM 373 (514)
Q Consensus 305 ~~~~~~~~~~a~~~~~~m~~~g~~p~-~-------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~---~~~~~~l 373 (514)
.|...|++++|...+++..+. .|+ . ..|..+...+...|++++|...++++.+ +.|+ ...+..+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l 159 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSL 159 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHH
Confidence 899999999999999998874 333 3 3466777778888999999999998874 3665 4567777
Q ss_pred HHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 046312 374 ADILARAGHLKEAYTFIMNMP--FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKY 446 (514)
Q Consensus 374 i~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 446 (514)
..+|...|+. .++++. ...+...|.... ....+. +++|...++++.++.|+++.+...+..+.
T Consensus 160 ~~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~---~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 160 GVLFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAA---FKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHH---HHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHH---HHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 7777665543 233332 223444454443 233455 78899999999999999877666665543
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.19 E-value=9e-10 Score=97.16 Aligned_cols=189 Identities=13% Similarity=0.013 Sum_probs=141.9
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcCc----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 046312 263 LNCQLGTALIDMYAKCGAVGCARLLFSRMEE----INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPN-YVTFLGV 337 (514)
Q Consensus 263 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l 337 (514)
.++..+......+...|++++|...|++..+ ++...+..+..++...|++++|+..+++..+. .|+ ...+..+
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l 82 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGK 82 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHH
Confidence 3557778888889999999999999988764 56677777888889999999999999998874 344 5667788
Q ss_pred HHHHhccCcHHHHHHHHHHHHHhhCCCCc-h-------HHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC---HHHHHHH
Q 046312 338 LCACNHAGMVEDGYRYFHEMEHVHGIKPM-R-------IHYHTMADILARAGHLKEAYTFIMNMP-FQPN---PIVLRAL 405 (514)
Q Consensus 338 l~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~-------~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~---~~~~~~l 405 (514)
..++...|++++|...+++..+. .|+ . ..|..+...+.+.|++++|.+.|+++. ..|+ ...+..+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l 159 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKA---VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSL 159 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHH
Confidence 88889999999999999998875 333 3 457777788888999999999998876 5665 3556666
Q ss_pred HHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 046312 406 LSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNVG 466 (514)
Q Consensus 406 ~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 466 (514)
...+... +...++.+..+.+.+...|.. ......|.+++|...+++..+..
T Consensus 160 ~~~~~~~--------~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 160 GVLFYNN--------GADVLRKATPLASSNKEKYAS--EKAKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHHHH--------HHHHHHHHGGGTTTCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHH--------HHHHHHHHHhcccCCHHHHHH--HHHHHHHHHHHHHHHHHHHhhcC
Confidence 6666443 445567777777665444433 33445667899999999988754
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.16 E-value=5.4e-09 Score=95.99 Aligned_cols=189 Identities=17% Similarity=0.042 Sum_probs=101.7
Q ss_pred HHHHhCCChhHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHhccCChHHHHHHHHHHHHhCCC---C--chhHHHHHH
Q 046312 203 TVCVENLWLGEAVGYFVKMKDL----GFEPD-ETTMLVVLSACTELGNLSLGKWVHLQLIERGTV---L--NCQLGTALI 272 (514)
Q Consensus 203 ~~~~~~~~~~~a~~~~~~m~~~----~~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~---~--~~~~~~~li 272 (514)
..|...|++++|...|.+..+. |-.++ ..+|..+..+|...|++++|...++..++.... + -..+++.+.
T Consensus 45 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg 124 (292)
T 1qqe_A 45 TIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELG 124 (292)
T ss_dssp HHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3445556666666555554432 21111 345555666666666666666666655443110 0 123555666
Q ss_pred HHHHhc-CCHHHHHHHHHhcCc--C---C----HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH------HHHHH
Q 046312 273 DMYAKC-GAVGCARLLFSRMEE--I---N----VWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNY------VTFLG 336 (514)
Q Consensus 273 ~~~~~~-g~~~~A~~~~~~~~~--~---~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~------~~~~~ 336 (514)
..|... |++++|+..|++..+ | + ..++..+...+.+.|++++|+..|++..+....... ..|..
T Consensus 125 ~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 204 (292)
T 1qqe_A 125 EILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLK 204 (292)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHH
Confidence 666664 777777766666553 1 1 235666667777777777777777777664322111 13455
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHhhCCCCchH------HHHHHHHHHH--hcCCHHHHHHHHHhCC
Q 046312 337 VLCACNHAGMVEDGYRYFHEMEHVHGIKPMRI------HYHTMADILA--RAGHLKEAYTFIMNMP 394 (514)
Q Consensus 337 ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~------~~~~li~~~~--~~g~~~~A~~~~~~~~ 394 (514)
+..++...|+++.|...+++..+ +.|+.. .+..++..+. ..+++++|+..|+++.
T Consensus 205 lg~~~~~~g~~~~A~~~~~~al~---l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 205 KGLCQLAATDAVAAARTLQEGQS---EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHHTTCHHHHHHHHHGGGC---C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh---hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 55666667777777777776652 333311 2333444443 3455777777776664
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.12 E-value=1e-08 Score=92.68 Aligned_cols=238 Identities=8% Similarity=-0.039 Sum_probs=120.8
Q ss_pred HHcCCCHHHHHHHhhccCCCCh-hhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHH
Q 046312 174 YGSCRRKRDACKVFDDMCERSV-VSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWV 252 (514)
Q Consensus 174 ~~~~~~~~~A~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~ 252 (514)
..-.|.+..+..-..++.+.+. ..-.-+.++|+..|+++... .-.|....+..+...+. .+ +...
T Consensus 23 ~fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~~---------~~~~~~~a~~~la~~~~-~~----a~~~ 88 (310)
T 3mv2_B 23 NYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQD---------PTSKLGKVLDLYVQFLD-TK----NIEE 88 (310)
T ss_dssp HHTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCCC---------SSSTTHHHHHHHHHHHT-TT----CCHH
T ss_pred HHHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccCC---------CCCHHHHHHHHHHHHhc-cc----HHHH
Confidence 3456777776665555432222 22223346666666665321 12333333333333332 11 4455
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCc-----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 046312 253 HLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEE-----INVWTWSAMILGLAQHGYAEEALELFSNMKNSSI 327 (514)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 327 (514)
+++..+.+ .++......+..++...|++++|++++.+... .+...+..++..+.+.|+.+.|.+.+++|.+.
T Consensus 89 l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~-- 165 (310)
T 3mv2_B 89 LENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA-- 165 (310)
T ss_dssp HHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--
Confidence 55555443 23334444666666666777777766666532 23455556666666667777777777666653
Q ss_pred CC-----CHHHHHHHHHHH--hccC--cHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC-C--
Q 046312 328 SP-----NYVTFLGVLCAC--NHAG--MVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP-F-- 395 (514)
Q Consensus 328 ~p-----~~~~~~~ll~~~--~~~~--~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~-- 395 (514)
.| +..+...+..++ ...| ++..|..+|+++.+. .|+..+-..+..++.+.|++++|.+.++.+. .
T Consensus 166 ~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p 242 (310)
T 3mv2_B 166 IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYY 242 (310)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHH
T ss_pred CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 44 244444444442 2223 666666666666543 3432222233335666666666666665442 1
Q ss_pred --------CC-CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCC
Q 046312 396 --------QP-NPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGS 436 (514)
Q Consensus 396 --------~p-~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 436 (514)
.| |..++..++......|+ .+.+.++++.+..|+++
T Consensus 243 ~~~~k~~~~p~~~~~LaN~i~l~~~lgk-----~a~~l~~qL~~~~P~hp 287 (310)
T 3mv2_B 243 SVEQKENAVLYKPTFLANQITLALMQGL-----DTEDLTNQLVKLDHEHA 287 (310)
T ss_dssp HTTTCHHHHSSHHHHHHHHHHHHHHTTC-----TTHHHHHHHHHTTCCCH
T ss_pred cccccccCCCCCHHHHHHHHHHHHHhCh-----HHHHHHHHHHHhCCCCh
Confidence 13 34444333333333333 35666666666666654
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.10 E-value=1.2e-09 Score=99.35 Aligned_cols=168 Identities=13% Similarity=0.139 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhh-----CCC
Q 046312 297 WTWSAMILGLAQHGYAEEALELFSNMKNS------SISP-NYVTFLGVLCACNHAGMVEDGYRYFHEMEHVH-----GIK 364 (514)
Q Consensus 297 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~------g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~ 364 (514)
.++..+...|...|++++|...+++..+. .-.| ...++..+...+...|++++|..+++++.+.. +-.
T Consensus 86 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 165 (283)
T 3edt_B 86 ATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDD 165 (283)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34555555555666666666666555442 1112 23445566666666777777777666665420 012
Q ss_pred C-chHHHHHHHHHHHhcCCHHHHHHHHHhCC----------CCCC-HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcC
Q 046312 365 P-MRIHYHTMADILARAGHLKEAYTFIMNMP----------FQPN-PIVLRALLSASSIHDAKYQDGVGNEVRRRLLELE 432 (514)
Q Consensus 365 p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~----------~~p~-~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~ 432 (514)
| ...++..+...|.+.|++++|...++++. ..+. ...+..+.......+..........+........
T Consensus 166 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (283)
T 3edt_B 166 PNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACK 245 (283)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCC
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcC
Confidence 2 24456666777777777777777776552 1121 1223223323332222111111111111112222
Q ss_pred ---CCCCchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 046312 433 ---PRGSQNLVIVANKYAEVGMWEKVSNVRRFMKN 464 (514)
Q Consensus 433 ---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 464 (514)
|....++..++.+|.+.|++++|..++++..+
T Consensus 246 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 246 VDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33344677899999999999999999998764
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=2.6e-09 Score=109.82 Aligned_cols=161 Identities=9% Similarity=-0.015 Sum_probs=107.8
Q ss_pred cccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCC-cchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHH
Q 046312 94 PIPWNNLIRGYAWSDRPREAVWVFIDMKRRGIKPT-EFTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVR 172 (514)
Q Consensus 94 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 172 (514)
+.+|+.|...+.+.|++++|++.|++..+. .|+ ..+|..+..++.+.|++++|++.|++.++.. +-+..+|..+..
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~ 85 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 355667777777777777777777776664 333 3466667777777777777777777776663 334566777777
Q ss_pred HHHcCCCHHHHHHHhhcc---CCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHH
Q 046312 173 FYGSCRRKRDACKVFDDM---CERSVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLG 249 (514)
Q Consensus 173 ~~~~~~~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a 249 (514)
+|.+.|++++|.+.|++. .+.+..+|+.+..+|.+.|++++|+..|++..+.. +-+...+..+..++...|++++|
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHHH
Confidence 777777777777777666 22355667777777777777777777777776653 22456667777777777777777
Q ss_pred HHHHHHHHH
Q 046312 250 KWVHLQLIE 258 (514)
Q Consensus 250 ~~~~~~~~~ 258 (514)
.+.++++.+
T Consensus 165 ~~~~~kal~ 173 (723)
T 4gyw_A 165 DERMKKLVS 173 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 776666554
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.06 E-value=8.7e-10 Score=100.39 Aligned_cols=154 Identities=13% Similarity=0.065 Sum_probs=89.8
Q ss_pred hCCCchHHHHHHHHHHHc-------CCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHh------CCCC-CcchHHHHH
Q 046312 106 WSDRPREAVWVFIDMKRR-------GIKPTEFTYPFVLKACAEISGLNEGMQVQANVTKS------GLDS-DVYTNNNLV 171 (514)
Q Consensus 106 ~~g~~~~a~~~~~~m~~~-------~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~------~~~~-~~~~~~~li 171 (514)
..|++++|+.+|++..+. +.+....++..+...+...|++++|...++++.+. +-.| ...++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 345666666665554431 11112345666666777777777777777766544 1112 234566666
Q ss_pred HHHHcCCCHHHHHHHhhccCC-----------CChhhHHHHHHHHHhCCChhHHHHHHHHHHHC------CCCC-CHHHH
Q 046312 172 RFYGSCRRKRDACKVFDDMCE-----------RSVVSWNVIITVCVENLWLGEAVGYFVKMKDL------GFEP-DETTM 233 (514)
Q Consensus 172 ~~~~~~~~~~~A~~~~~~~~~-----------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~~~p-~~~t~ 233 (514)
..|...|++++|...+++... ....++..+...+...|++++|...+++..+. +..| ...++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 667777777777666665511 12345666666677777777777777766553 1122 23456
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHh
Q 046312 234 LVVLSACTELGNLSLGKWVHLQLIER 259 (514)
Q Consensus 234 ~~ll~~~~~~g~~~~a~~~~~~~~~~ 259 (514)
..+...+...|++++|...++++.+.
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 66666677777777777777666553
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.02 E-value=4.8e-09 Score=96.35 Aligned_cols=201 Identities=8% Similarity=-0.052 Sum_probs=139.3
Q ss_pred ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCcC-----C----HHHHHHHHHHHHHcCChHHH
Q 046312 245 NLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEEI-----N----VWTWSAMILGLAQHGYAEEA 315 (514)
Q Consensus 245 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~----~~~~~~li~~~~~~~~~~~a 315 (514)
++++|...+++. ...|...|++++|...|.+..+. + ..+|+.+...|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 467777766665 34567788888888888766531 1 45778888888888999999
Q ss_pred HHHHHHHHHCCC---CCC--HHHHHHHHHHHhcc-CcHHHHHHHHHHHHHhhCCCCc----hHHHHHHHHHHHhcCCHHH
Q 046312 316 LELFSNMKNSSI---SPN--YVTFLGVLCACNHA-GMVEDGYRYFHEMEHVHGIKPM----RIHYHTMADILARAGHLKE 385 (514)
Q Consensus 316 ~~~~~~m~~~g~---~p~--~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~ 385 (514)
+..+++..+... .+. ..++..+...|... |++++|...|++..+...-..+ ..++..+...+.+.|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 888888765210 111 34677788888885 9999999999988764211111 3567888889999999999
Q ss_pred HHHHHHhCC-CCCCH--------HHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCch-----HHHHHHHHH--hc
Q 046312 386 AYTFIMNMP-FQPNP--------IVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQN-----LVIVANKYA--EV 449 (514)
Q Consensus 386 A~~~~~~~~-~~p~~--------~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~ 449 (514)
|...|+++. ..|+. ..|..+...+...|+ ++.|...++.+.++.|+.... +..++.+|. ..
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~ 253 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATD---AVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDS 253 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTC---HHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCH
Confidence 999998874 23321 256677778888999 999999999999988875543 335666665 45
Q ss_pred CCHHHHHHHHHHHH
Q 046312 450 GMWEKVSNVRRFMK 463 (514)
Q Consensus 450 g~~~~A~~~~~~m~ 463 (514)
+++++|...|+++.
T Consensus 254 ~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 254 EQLSEHCKEFDNFM 267 (292)
T ss_dssp TTHHHHHHHHTTSS
T ss_pred HHHHHHHHHhccCC
Confidence 77888888886653
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.01 E-value=4.3e-08 Score=88.58 Aligned_cols=181 Identities=9% Similarity=0.044 Sum_probs=100.2
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCC-CCchhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 046312 214 AVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGT-VLNCQLGTALIDMYAKCGAVGCARLLFSRME 292 (514)
Q Consensus 214 a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 292 (514)
|+..|++..+.+ .++..++..+..++...|++++|.+++.+.+..+. .-+...+..++..|.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 555666555543 44455555666666667777777777766655443 2345566666677777777777777776665
Q ss_pred c--C-----CHHHHHHHHHHH--HHcC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhh
Q 046312 293 E--I-----NVWTWSAMILGL--AQHG--YAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVH 361 (514)
Q Consensus 293 ~--~-----~~~~~~~li~~~--~~~~--~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 361 (514)
+ | +..+...++.++ ...| ++.+|..+|+++.+. .|+..+-..++.++...|++++|...++.+.+.+
T Consensus 164 ~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 164 NAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred hcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 4 3 134444454442 2223 667777777776543 3442333333446666677777777766554321
Q ss_pred C--------CCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCH
Q 046312 362 G--------IKPMRIHYHTMADILARAGHLKEAYTFIMNMP-FQPNP 399 (514)
Q Consensus 362 ~--------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~~ 399 (514)
. -+-+..+...+|......|+ +|.++++++. ..|+.
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~h 286 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEH 286 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCC
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCC
Confidence 0 02244555444444444555 6666666665 44543
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.97 E-value=1.8e-08 Score=80.02 Aligned_cols=127 Identities=13% Similarity=0.170 Sum_probs=76.1
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHh
Q 046312 334 FLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP--FQPNPIVLRALLSASSI 411 (514)
Q Consensus 334 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~ 411 (514)
+..+...+...|++++|..+++++.+. . +.+...+..+...+...|++++|...++++. .+.+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALEL-D-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHc-C-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 334444555555555555555555543 1 2234445555555555666666666665553 22345555666666666
Q ss_pred cCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 046312 412 HDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNV 465 (514)
Q Consensus 412 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 465 (514)
.|+ ++.|.+.++.+.+..|.+...+..++.+|.+.|++++|...++++...
T Consensus 82 ~~~---~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 82 QGD---YDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTC---HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred hcC---HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 666 777777777776767766666777777777777777777777776543
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.97 E-value=4.5e-08 Score=88.13 Aligned_cols=182 Identities=8% Similarity=-0.058 Sum_probs=115.8
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCc--C-C---HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC-HHHHH
Q 046312 264 NCQLGTALIDMYAKCGAVGCARLLFSRMEE--I-N---VWTWSAMILGLAQHGYAEEALELFSNMKNSSI-SPN-YVTFL 335 (514)
Q Consensus 264 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~-~~~~~ 335 (514)
+...+..+...+.+.|++++|...|+++.+ | + ...+..+..+|.+.|++++|...|++..+... .|. ...+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 345555566666677777777777776654 2 2 45566666667777777777777777666421 111 33445
Q ss_pred HHHHHHhc--------cCcHHHHHHHHHHHHHhhCCCCch-HHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHH
Q 046312 336 GVLCACNH--------AGMVEDGYRYFHEMEHVHGIKPMR-IHYHTMADILARAGHLKEAYTFIMNMPFQPNPIVLRALL 406 (514)
Q Consensus 336 ~ll~~~~~--------~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~ 406 (514)
.+..++.. .|++++|...|+++.+. .|+. .....+.......++. ...+..+.
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~a~~~~~~~~~~~---------------~~~~~~la 155 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR---YPNHELVDDATQKIRELRAKL---------------ARKQYEAA 155 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH---CTTCTTHHHHHHHHHHHHHHH---------------HHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHH---CcCchhHHHHHHHHHHHHHHH---------------HHHHHHHH
Confidence 55555655 66777777777776654 2331 1221111111000000 01135567
Q ss_pred HHHHhcCCCCcchHHHHHHHHHHhcCCCCC---chHHHHHHHHHhc----------CCHHHHHHHHHHHHhCC
Q 046312 407 SASSIHDAKYQDGVGNEVRRRLLELEPRGS---QNLVIVANKYAEV----------GMWEKVSNVRRFMKNVG 466 (514)
Q Consensus 407 ~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~~~ 466 (514)
..+...|+ ++.|...++.+.+..|+++ .++..++.+|... |++++|...++++.+..
T Consensus 156 ~~~~~~g~---~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~ 225 (261)
T 3qky_A 156 RLYERREL---YEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF 225 (261)
T ss_dssp HHHHHTTC---HHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHccC---HHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence 78899999 9999999999999999854 4678999999877 89999999999998754
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.96 E-value=3.2e-08 Score=86.92 Aligned_cols=183 Identities=9% Similarity=-0.022 Sum_probs=117.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCc--CC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHH
Q 046312 265 CQLGTALIDMYAKCGAVGCARLLFSRMEE--IN----VWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNY--VTFLG 336 (514)
Q Consensus 265 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~ 336 (514)
...+..+...+.+.|++++|+..|+++.+ |+ ...+..+..+|.+.|++++|+..|+++.+....... ..+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 34455566777788888888888887764 32 246667777888888888888888887764321111 13333
Q ss_pred HHHHHhc------------------cCcHHHHHHHHHHHHHhhCCCCch-HHHHHHHHHHHhcCCHHHHHHHHHhCCCCC
Q 046312 337 VLCACNH------------------AGMVEDGYRYFHEMEHVHGIKPMR-IHYHTMADILARAGHLKEAYTFIMNMPFQP 397 (514)
Q Consensus 337 ll~~~~~------------------~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~p 397 (514)
+..++.. .|++++|...|+++.+. .|+. ..+....... ......
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~l~----~~~~~~---------- 146 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKRLV----FLKDRL---------- 146 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHHHH----HHHHHH----------
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHHHH----HHHHHH----------
Confidence 3444433 35566666666666543 3332 1111111100 000000
Q ss_pred CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCC---chHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 046312 398 NPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGS---QNLVIVANKYAEVGMWEKVSNVRRFMKNVGLK 468 (514)
Q Consensus 398 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 468 (514)
......+...+...|+ ++.|...++.+.+..|+++ .++..++.+|.+.|++++|.+.++.+...+..
T Consensus 147 -~~~~~~~a~~~~~~~~---~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 147 -AKYEYSVAEYYTERGA---WVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp -HHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred -HHHHHHHHHHHHHcCc---HHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 0011245667888999 9999999999999999875 46889999999999999999999999877654
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.96 E-value=2.3e-08 Score=90.07 Aligned_cols=203 Identities=12% Similarity=0.014 Sum_probs=143.1
Q ss_pred CCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCC--chhHHHHHHHHHHhcCCHHHHHHHHHhcCc--CC----HHH
Q 046312 227 EPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVL--NCQLGTALIDMYAKCGAVGCARLLFSRMEE--IN----VWT 298 (514)
Q Consensus 227 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~----~~~ 298 (514)
+.+...+..+...+.+.|++++|...|+.+++..... ....+..+..+|.+.|++++|...|++..+ |+ ...
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 3456777788888999999999999999999875332 166788899999999999999999999875 31 456
Q ss_pred HHHHHHHHHH--------cCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHH
Q 046312 299 WSAMILGLAQ--------HGYAEEALELFSNMKNSSISPNY-VTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIH 369 (514)
Q Consensus 299 ~~~li~~~~~--------~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~ 369 (514)
+..+..++.. .|++++|...|+++++. .|+. .....+ ..+..+... -...
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~--------------~~~~~~~~~-----~~~~ 150 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDAT--------------QKIRELRAK-----LARK 150 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHH--------------HHHHHHHHH-----HHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHH--------------HHHHHHHHH-----HHHH
Confidence 7778888888 99999999999999885 3432 222111 111111110 0112
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhc----------CCCCcchHHHHHHHHHHhcCCC
Q 046312 370 YHTMADILARAGHLKEAYTFIMNMP-FQPN----PIVLRALLSASSIH----------DAKYQDGVGNEVRRRLLELEPR 434 (514)
Q Consensus 370 ~~~li~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~l~~~~~~~----------~~~~~~~~a~~~~~~~~~~~p~ 434 (514)
+..+...|.+.|++++|...|+++. ..|+ ...+..+..++... |+ +++|...++.+.+..|+
T Consensus 151 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~---~~~A~~~~~~~~~~~p~ 227 (261)
T 3qky_A 151 QYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPER---YRRAVELYERLLQIFPD 227 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHH---HHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccch---HHHHHHHHHHHHHHCCC
Confidence 4556777888899999988888874 3333 35666677777765 66 88899999999999998
Q ss_pred CCch---HHHHHHHHHhcCCHH
Q 046312 435 GSQN---LVIVANKYAEVGMWE 453 (514)
Q Consensus 435 ~~~~---~~~l~~~~~~~g~~~ 453 (514)
++.+ ...+..++.+.|+++
T Consensus 228 ~~~~~~a~~~l~~~~~~~~~~~ 249 (261)
T 3qky_A 228 SPLLRTAEELYTRARQRLTELE 249 (261)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHhh
Confidence 7632 334444444444443
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.91 E-value=5.9e-08 Score=76.89 Aligned_cols=130 Identities=15% Similarity=0.189 Sum_probs=70.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHH
Q 046312 299 WSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILA 378 (514)
Q Consensus 299 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 378 (514)
|..+...+...|++++|..+++++.+.+ +.+...+..+...+...|++++|..+++++... . +.+...+..+...+.
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-D-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH-C-CCchHHHHHHHHHHH
Confidence 4445555555566666666665555432 223444555555555556666666666665543 1 223444555555566
Q ss_pred hcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCC
Q 046312 379 RAGHLKEAYTFIMNMP--FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPR 434 (514)
Q Consensus 379 ~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~ 434 (514)
+.|++++|.+.++++. .+.+...+..+...+...|+ .+.|...++.+.+..|+
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~---~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGD---YDEAIEYYQKALELDPR 135 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC---HHHHHHHHHHHHHHSTT
T ss_pred HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcc---HHHHHHHHHHHHccCCC
Confidence 6666666666665553 22344555555566666666 66666666666555553
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=5.3e-09 Score=85.41 Aligned_cols=140 Identities=9% Similarity=-0.038 Sum_probs=103.2
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCC-chHHHHHHHHHHHhcC
Q 046312 304 LGLAQHGYAEEALELFSNMKNSSISPN-YVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKP-MRIHYHTMADILARAG 381 (514)
Q Consensus 304 ~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g 381 (514)
..+...|++++|+..++..... .|+ ...+..+...|.+.|++++|...|++..+. .| +...|..+..+|.+.|
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV---QERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcC
Confidence 3444566777887777776542 333 334556777788888888888888888764 44 4677888888888888
Q ss_pred CHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCCCcchHHHH-HHHHHHhcCCCCCchHHHHHHHHHhcCC
Q 046312 382 HLKEAYTFIMNMP-FQP-NPIVLRALLSASSIHDAKYQDGVGNE-VRRRLLELEPRGSQNLVIVANKYAEVGM 451 (514)
Q Consensus 382 ~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~~~~a~~-~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 451 (514)
++++|...|++.. ..| +...+..+...+...|+ .+++.+ .++++.+++|+++.+|......+...|+
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~---~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDV---TDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCS---SSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 8888888888875 444 56778888888888888 765554 5688999999988888888888887775
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=1.2e-08 Score=93.31 Aligned_cols=174 Identities=11% Similarity=-0.041 Sum_probs=95.6
Q ss_pred HHHHHHHHhcCcCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhh
Q 046312 282 GCARLLFSRMEEINVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVH 361 (514)
Q Consensus 282 ~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 361 (514)
+...+.+......+...+..+...+...|++++|...|++..+.. +-+...+..+...+...|++++|...++++...
T Consensus 103 ~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~- 180 (287)
T 3qou_A 103 EAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ- 180 (287)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG-
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh-
Confidence 344444444443444555555566666666666666666665532 223445555556666666666666666665532
Q ss_pred CCCCchHHHH-HHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCC--C
Q 046312 362 GIKPMRIHYH-TMADILARAGHLKEAYTFIMNMP--FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRG--S 436 (514)
Q Consensus 362 ~~~p~~~~~~-~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~--~ 436 (514)
.|+..... .....+.+.++.++|.+.+++.. .+.+...+..+...+...|+ +++|...+..+.+.+|++ .
T Consensus 181 --~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~---~~~A~~~l~~~l~~~p~~~~~ 255 (287)
T 3qou_A 181 --DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGR---NEEALELLFGHLRXDLTAADG 255 (287)
T ss_dssp --GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTTGGGG
T ss_pred --hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHccc---HHHHHHHHHHHHhcccccccc
Confidence 33332222 12222445555555666555553 22345556666666666666 666666666666666655 4
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHH
Q 046312 437 QNLVIVANKYAEVGMWEKVSNVRRFM 462 (514)
Q Consensus 437 ~~~~~l~~~~~~~g~~~~A~~~~~~m 462 (514)
.++..++.+|...|+.++|...+++.
T Consensus 256 ~a~~~l~~~~~~~g~~~~a~~~~r~a 281 (287)
T 3qou_A 256 QTRXTFQEILAALGTGDALASXYRRQ 281 (287)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 45666666666666666666665544
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.87 E-value=9.2e-09 Score=86.55 Aligned_cols=122 Identities=12% Similarity=0.053 Sum_probs=53.1
Q ss_pred HHHhccCcHHHHHHHHHHHHHhhCCCC-chHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCHHHHHHHHHH-HHhcCCC
Q 046312 339 CACNHAGMVEDGYRYFHEMEHVHGIKP-MRIHYHTMADILARAGHLKEAYTFIMNMP-FQPNPIVLRALLSA-SSIHDAK 415 (514)
Q Consensus 339 ~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~-~~~~~~~ 415 (514)
..+...|++++|...+++..+. .| +...+..+...+.+.|++++|...++++. ..|+...+..+... +...++
T Consensus 14 ~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~- 89 (176)
T 2r5s_A 14 SELLQQGEHAQALNVIQTLSDE---LQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQAA- 89 (176)
T ss_dssp HHHHHTTCHHHHHHHHHTSCHH---HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHcCCHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhhcc-
Confidence 3344445555555555544432 22 23344444445555555555555555543 22322222111111 111112
Q ss_pred CcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 046312 416 YQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNVG 466 (514)
Q Consensus 416 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 466 (514)
...+...++.+.+.+|+++..+..++.++...|++++|...++++.+..
T Consensus 90 --~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 138 (176)
T 2r5s_A 90 --ESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVN 138 (176)
T ss_dssp --SCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred --cchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC
Confidence 2224445555555555555555555555555555555555555554433
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.87 E-value=1.1e-08 Score=105.47 Aligned_cols=191 Identities=11% Similarity=0.015 Sum_probs=124.4
Q ss_pred hccCChHHHHHHHHHHH--------HhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCc---CCHHHHHHHHHHHHHc
Q 046312 241 TELGNLSLGKWVHLQLI--------ERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEE---INVWTWSAMILGLAQH 309 (514)
Q Consensus 241 ~~~g~~~~a~~~~~~~~--------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 309 (514)
...|++++|...+++.. +.. +.+...+..+..+|.+.|++++|++.|+++.+ .+...|..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 56777788888777776 322 33456677777777788888888888877764 3566777777777788
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCc-hHHHHHHHHHHHhcCCHHHHHH
Q 046312 310 GYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPM-RIHYHTMADILARAGHLKEAYT 388 (514)
Q Consensus 310 ~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~ 388 (514)
|++++|...|++..+.. +-+...+..+..++...|++++ ...|+++.+. .|+ ...|..+..++.+.|++++|.+
T Consensus 481 g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWST---NDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh---CCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 88888888888777642 2235566677777777788877 7777777754 343 5567777777778888888888
Q ss_pred HHHhCC-CCCC-HHHHHHHHHHHHhcCCCCc--chHHHHHHHHHHhcCCCCCc
Q 046312 389 FIMNMP-FQPN-PIVLRALLSASSIHDAKYQ--DGVGNEVRRRLLELEPRGSQ 437 (514)
Q Consensus 389 ~~~~~~-~~p~-~~~~~~l~~~~~~~~~~~~--~~~a~~~~~~~~~~~p~~~~ 437 (514)
.|+++. ..|+ ...+..+..++...++... .+...++.+.+.++.+.++.
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~ 608 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPR 608 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTT
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHH
Confidence 887775 5555 3455555555544332111 24455555555566665554
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=5.6e-08 Score=88.85 Aligned_cols=160 Identities=10% Similarity=-0.065 Sum_probs=121.4
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCc---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH-H
Q 046312 262 VLNCQLGTALIDMYAKCGAVGCARLLFSRMEE---INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLG-V 337 (514)
Q Consensus 262 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~-l 337 (514)
+.+...+..+...+...|++++|...|++..+ .+...+..+...+...|++++|...++++... .|+...... .
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~ 191 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVA 191 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHH
Confidence 44566777788888899999999999998764 35678888888999999999999999888764 455443222 2
Q ss_pred HHHHhccCcHHHHHHHHHHHHHhhCCCC-chHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC---HHHHHHHHHHHHhc
Q 046312 338 LCACNHAGMVEDGYRYFHEMEHVHGIKP-MRIHYHTMADILARAGHLKEAYTFIMNMP-FQPN---PIVLRALLSASSIH 412 (514)
Q Consensus 338 l~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~---~~~~~~l~~~~~~~ 412 (514)
...+...++.+.|...+++.... .| +...+..+...|...|++++|.+.|.++. ..|+ ...+..++..+...
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~---~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~ 268 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAE---NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAAL 268 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHH
T ss_pred HHHHHhhcccCccHHHHHHHHhc---CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHc
Confidence 23355667777788888888765 44 46778888888999999999999998875 4443 56788888888888
Q ss_pred CCCCcchHHHHHHHHHH
Q 046312 413 DAKYQDGVGNEVRRRLL 429 (514)
Q Consensus 413 ~~~~~~~~a~~~~~~~~ 429 (514)
|+ .+.+...+++..
T Consensus 269 g~---~~~a~~~~r~al 282 (287)
T 3qou_A 269 GT---GDALASXYRRQL 282 (287)
T ss_dssp CT---TCHHHHHHHHHH
T ss_pred CC---CCcHHHHHHHHH
Confidence 88 888877777654
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.85 E-value=2e-07 Score=91.75 Aligned_cols=374 Identities=8% Similarity=-0.052 Sum_probs=197.8
Q ss_pred CCC-ChHHHHHHHcccCCCCCcccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCC-chHHHHH
Q 046312 74 SSK-NLTYARSILCNYVNDSVPIPWNNLIRGYAWSDRPREAVWVFIDMKRRGIKPTEFTYPFVLKACAEISG-LNEGMQV 151 (514)
Q Consensus 74 ~~g-~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~-~~~a~~~ 151 (514)
+.| +++.|+.+|+++. ..+-. |+++.+..+|++.... .|+...|...+....+.++ .+....+
T Consensus 6 ~~~~~i~~aR~vyer~l------------~~~P~-~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~ 70 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHAR------------RLYMS-KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEV 70 (493)
T ss_dssp ------CCHHHHHHHHH------------HHHHT-TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHH
T ss_pred HcCcchHHHHHHHHHHH------------HHCCC-CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHH
Confidence 345 3667777776654 11111 8899999999998874 5788888888877776663 4567778
Q ss_pred HHHHHHh-CCCC-CcchHHHHHHHHHc----CCCHHHHHHHhhccCC-C--Ch-hhHHHHHHHHHhCCChhHHHHHHHHH
Q 046312 152 QANVTKS-GLDS-DVYTNNNLVRFYGS----CRRKRDACKVFDDMCE-R--SV-VSWNVIITVCVENLWLGEAVGYFVKM 221 (514)
Q Consensus 152 ~~~~~~~-~~~~-~~~~~~~li~~~~~----~~~~~~A~~~~~~~~~-~--~~-~~~~~li~~~~~~~~~~~a~~~~~~m 221 (514)
|+..+.. |..+ +..+|...+..+.. .++++.+.++|++... | +. ..|...... .+..+...+..++.+.
T Consensus 71 fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~f-E~~~~~~~~~~~~~~~ 149 (493)
T 2uy1_A 71 YEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENF-ELELNKITGKKIVGDT 149 (493)
T ss_dssp HHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHH-HHHHCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHH-HHHhccccHHHHHHHH
Confidence 8877664 4333 55677777765442 3567788888888733 2 11 122222111 1111112222222111
Q ss_pred HHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC-------CHHHHHHHHHhcCc-
Q 046312 222 KDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCG-------AVGCARLLFSRMEE- 293 (514)
Q Consensus 222 ~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-------~~~~A~~~~~~~~~- 293 (514)
. +.+..|..+++.+...-...+...|...++.-...+ ..+.+..+|+++..
T Consensus 150 ~---------------------~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~ 208 (493)
T 2uy1_A 150 L---------------------PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS 208 (493)
T ss_dssp H---------------------HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred h---------------------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc
Confidence 0 122223333333322100012234444443322210 02345566666554
Q ss_pred --CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhC--------C
Q 046312 294 --INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHG--------I 363 (514)
Q Consensus 294 --~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--------~ 363 (514)
.....|...+.-+.+.|+.++|..++++.... |....+......+.+.++ +++.+.+..- .
T Consensus 209 ~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~~y~~~~e~~~------~~~~l~~~~~~~~~~~~~~ 279 (493)
T 2uy1_A 209 FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSLYYGLVMDEEA------VYGDLKRKYSMGEAESAEK 279 (493)
T ss_dssp TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHTTCTH------HHHHHHHHTC---------
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHHHHHhhcchhH------HHHHHHHHHHhhccchhhh
Confidence 34566777777777788888888888888775 443322211111111111 1222222110 0
Q ss_pred CC---chHHHHHHHHHHHhcCCHHHHHHHHHhCCCCC--CHHHHHHHHHHHH-hcCCCCcchHHHHHHHHHHhcCCCCCc
Q 046312 364 KP---MRIHYHTMADILARAGHLKEAYTFIMNMPFQP--NPIVLRALLSASS-IHDAKYQDGVGNEVRRRLLELEPRGSQ 437 (514)
Q Consensus 364 ~p---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p--~~~~~~~l~~~~~-~~~~~~~~~~a~~~~~~~~~~~p~~~~ 437 (514)
.+ ....|...+....+.|..+.|..+|+++. .| +...|......-. ..++ .+.|..+++.+.+..|+.+.
T Consensus 280 ~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A~-~~~~~~~v~i~~A~lE~~~~~d---~~~ar~ife~al~~~~~~~~ 355 (493)
T 2uy1_A 280 VFSKELDLLRINHLNYVLKKRGLELFRKLFIELG-NEGVGPHVFIYCAFIEYYATGS---RATPYNIFSSGLLKHPDSTL 355 (493)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHT-TSCCCHHHHHHHHHHHHHHHCC---SHHHHHHHHHHHHHCTTCHH
T ss_pred hcccccHHHHHHHHHHHHHcCCHHHHHHHHHHhh-CCCCChHHHHHHHHHHHHHCCC---hHHHHHHHHHHHHHCCCCHH
Confidence 01 12456666666666777888888887773 22 2333332221111 2235 77888888888877777666
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCceeEEEECCeEEEEEecccCCcChHHHHHHHHHHHHHhh
Q 046312 438 NLVIVANKYAEVGMWEKVSNVRRFMKNVGLKKMKGMSWVELGGSIHRFYSGYDSQVELAGIYQILETLNLHMK 510 (514)
Q Consensus 438 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~ 510 (514)
.+...++...+.|+.+.|..+|++... ....| ...+.-...+|..+.+-.++++....++
T Consensus 356 ~~~~yid~e~~~~~~~~aR~l~er~~k------~~~lw-------~~~~~fE~~~G~~~~~r~v~~~~~~~~~ 415 (493)
T 2uy1_A 356 LKEEFFLFLLRIGDEENARALFKRLEK------TSRMW-------DSMIEYEFMVGSMELFRELVDQKMDAIK 415 (493)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHSCC------BHHHH-------HHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH------HHHHH-------HHHHHHHHHCCCHHHHHHHHHHHHHHhc
Confidence 666677777778888888888887621 11224 2333344556777777777877777665
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.84 E-value=9e-08 Score=88.50 Aligned_cols=220 Identities=10% Similarity=-0.018 Sum_probs=141.0
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 046312 208 NLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLL 287 (514)
Q Consensus 208 ~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 287 (514)
.|++++|.+++++..+.. +.. + +...++++.|...|..+ ...|...|++++|...
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~~---~------~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KTS---F------MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCC---S------SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-ccc---c------cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHH
Confidence 456667777777665431 110 0 11135666666655543 3456666777777777
Q ss_pred HHhcCc-----CC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHCC---CCCC--HHHHHHHHHHHhccCcHHHHHHH
Q 046312 288 FSRMEE-----IN----VWTWSAMILGLAQHGYAEEALELFSNMKNSS---ISPN--YVTFLGVLCACNHAGMVEDGYRY 353 (514)
Q Consensus 288 ~~~~~~-----~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g---~~p~--~~~~~~ll~~~~~~~~~~~a~~~ 353 (514)
|.+..+ .+ ..+|+.+...|...|++++|+..|++..+.- -.+. ..++..+..+|.. |++++|...
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 666543 11 3467777778888888888888888766521 1121 3456777778877 999999988
Q ss_pred HHHHHHhhCCCC----chHHHHHHHHHHHhcCCHHHHHHHHHhCC-C---CCC----HHHHHHHHHHHHhcCCCCcchHH
Q 046312 354 FHEMEHVHGIKP----MRIHYHTMADILARAGHLKEAYTFIMNMP-F---QPN----PIVLRALLSASSIHDAKYQDGVG 421 (514)
Q Consensus 354 ~~~~~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~---~p~----~~~~~~l~~~~~~~~~~~~~~~a 421 (514)
|++..+...-.. ...++..+...|.+.|++++|+..|++.. . .++ ...+..+...+...|+ ++.|
T Consensus 138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~---~~~A 214 (307)
T 2ifu_A 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRAD---YVAA 214 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---HHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCC---HHHH
Confidence 888775421111 14567788888899999999999888774 1 122 2355666667777788 9999
Q ss_pred HHHHHHHHhcCCCCCch-----HHHHHHHHHhcCCHHHHHHH
Q 046312 422 NEVRRRLLELEPRGSQN-----LVIVANKYAEVGMWEKVSNV 458 (514)
Q Consensus 422 ~~~~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~A~~~ 458 (514)
...++++. +.|..... ...++.++ ..|+.+.+.++
T Consensus 215 ~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 215 QKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 99999988 88765433 33555555 56777666653
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.83 E-value=2.1e-07 Score=95.89 Aligned_cols=167 Identities=13% Similarity=0.001 Sum_probs=85.2
Q ss_pred HhCCChhHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 046312 206 VENLWLGEAVGYFVKMK--------DLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAK 277 (514)
Q Consensus 206 ~~~~~~~~a~~~~~~m~--------~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 277 (514)
...|++++|++.+++.. +.. +.+...+..+..++...|++++|...++++.+... .+...+..+..+|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVG-WRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc-chHHHHHHHHHHHHH
Confidence 44555556655555554 221 22334455555555555666666655555555432 244455555555555
Q ss_pred cCCHHHHHHHHHhcCc---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 046312 278 CGAVGCARLLFSRMEE---INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYF 354 (514)
Q Consensus 278 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 354 (514)
.|++++|++.|++..+ .+...|..+..++.+.|++++ +..|++..+.. +-+...+..+..++...|++++|...|
T Consensus 480 ~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 5666666655555543 234455555555555555555 55555555432 123344555555555556666665555
Q ss_pred HHHHHhhCCCCc-hHHHHHHHHHHHh
Q 046312 355 HEMEHVHGIKPM-RIHYHTMADILAR 379 (514)
Q Consensus 355 ~~~~~~~~~~p~-~~~~~~li~~~~~ 379 (514)
+++.+ +.|+ ...+..+..++..
T Consensus 558 ~~al~---l~P~~~~a~~~~~~~~~~ 580 (681)
T 2pzi_A 558 DEVPP---TSRHFTTARLTSAVTLLS 580 (681)
T ss_dssp HTSCT---TSTTHHHHHHHHHHHTC-
T ss_pred Hhhcc---cCcccHHHHHHHHHHHHc
Confidence 55542 2343 3344444444433
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.83 E-value=6e-06 Score=81.29 Aligned_cols=350 Identities=11% Similarity=-0.030 Sum_probs=208.9
Q ss_pred hHHHHHHHHhcccCCCCChHHHHHHHcccCC-CCCcccHHHHHHHHHhCCC-chHHHHHHHHHHHc-CCCC-CcchHHHH
Q 046312 60 AQILKELVRFCTLSSSKNLTYARSILCNYVN-DSVPIPWNNLIRGYAWSDR-PREAVWVFIDMKRR-GIKP-TEFTYPFV 135 (514)
Q Consensus 60 ~~~~~~ll~~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~-~~~p-~~~~~~~l 135 (514)
-.+|...+..+- .|+++.+..+|++... .|++..|...+....+.+. .+....+|+..... |..| +...|...
T Consensus 15 R~vyer~l~~~P---~~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Y 91 (493)
T 2uy1_A 15 SAIMEHARRLYM---SKDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEY 91 (493)
T ss_dssp HHHHHHHHHHHH---TTCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHH
T ss_pred HHHHHHHHHHCC---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHH
Confidence 345555666655 3788888888888753 5677778777777666653 35566777776653 4333 33456666
Q ss_pred HHHHh----ccCCchHHHHHHHHHHHhCCCCCc--chHHHHHHHHH-------------cCCCHHHHHHHhhccC----C
Q 046312 136 LKACA----EISGLNEGMQVQANVTKSGLDSDV--YTNNNLVRFYG-------------SCRRKRDACKVFDDMC----E 192 (514)
Q Consensus 136 l~~~~----~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~-------------~~~~~~~A~~~~~~~~----~ 192 (514)
+..+. ..|+++.+.++|+.++.. ++.. ..|......-. ..+.+..|..+++.+. .
T Consensus 92 i~f~~~~~~~~~~~~~vR~iy~rAL~~--P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~ 169 (493)
T 2uy1_A 92 IEEEGKIEDEQTRIEKIRNGYMRALQT--PMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRG 169 (493)
T ss_dssp HHHTSSCSSHHHHHHHHHHHHHHHHTS--CCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhchhhhHHHHHHHHHHHHHHhC--hhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Confidence 65543 245677888888888763 2221 12221111100 0112223333333331 1
Q ss_pred CChhhHHHHHHHHHhCC--C-----hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCch
Q 046312 193 RSVVSWNVIITVCVENL--W-----LGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNC 265 (514)
Q Consensus 193 ~~~~~~~~li~~~~~~~--~-----~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 265 (514)
.+...|...+.--...+ - .+.+..+|+++.... +.+...|...+..+.+.|+.+.|..+++..... +.+.
T Consensus 170 ~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~ 246 (493)
T 2uy1_A 170 WSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGM 246 (493)
T ss_dssp CSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSS
T ss_pred ccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcH
Confidence 23446666555432221 1 345677888888753 455677777777788899999999999999988 3333
Q ss_pred hHHHHHHHHHHhcCCHHHH-HHHHHhcC------------cCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH
Q 046312 266 QLGTALIDMYAKCGAVGCA-RLLFSRME------------EINVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYV 332 (514)
Q Consensus 266 ~~~~~li~~~~~~g~~~~A-~~~~~~~~------------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 332 (514)
..+.. |....+.++. ..+.+... ......|...+..+.+.++.+.|..+|.+. +. ...+..
T Consensus 247 ~l~~~----y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~ 320 (493)
T 2uy1_A 247 FLSLY----YGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPH 320 (493)
T ss_dssp HHHHH----HHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHH
T ss_pred HHHHH----HHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChH
Confidence 33322 2221111111 11222111 012245666777777788899999999988 32 122333
Q ss_pred HHHHHHHHHh-ccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 046312 333 TFLGVLCACN-HAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMPFQPNPIVLRALLSASSI 411 (514)
Q Consensus 333 ~~~~ll~~~~-~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~ 411 (514)
.|......-. ..++.+.|..+|+...+.++- +...+...++...+.|+.+.|..+|+++. .....|...+.--..
T Consensus 321 v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~--~~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~ 396 (493)
T 2uy1_A 321 VFIYCAFIEYYATGSRATPYNIFSSGLLKHPD--STLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFM 396 (493)
T ss_dssp HHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 4432222111 234689999999999886432 24456667787788999999999999985 356778888877778
Q ss_pred cCCCCcchHHHHHHHHHHh
Q 046312 412 HDAKYQDGVGNEVRRRLLE 430 (514)
Q Consensus 412 ~~~~~~~~~a~~~~~~~~~ 430 (514)
.|+ .+.+..++++..+
T Consensus 397 ~G~---~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 397 VGS---MELFRELVDQKMD 412 (493)
T ss_dssp HSC---HHHHHHHHHHHHH
T ss_pred CCC---HHHHHHHHHHHHH
Confidence 898 8888887777664
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.82 E-value=4.1e-07 Score=78.91 Aligned_cols=172 Identities=9% Similarity=-0.081 Sum_probs=121.6
Q ss_pred HHHHHHhcCc-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC----cHHHHHHHHHHHH
Q 046312 284 ARLLFSRMEE-INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAG----MVEDGYRYFHEME 358 (514)
Q Consensus 284 A~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~----~~~~a~~~~~~~~ 358 (514)
|.+.|++..+ .++..+..+...|...+++++|..+|++..+.| +...+..+...|.. + ++++|..+|++..
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 3344444332 456666677777777788888888888877754 45556666666666 5 7888888888876
Q ss_pred HhhCCCCchHHHHHHHHHHHh----cCCHHHHHHHHHhCC-CCCC---HHHHHHHHHHHHh----cCCCCcchHHHHHHH
Q 046312 359 HVHGIKPMRIHYHTMADILAR----AGHLKEAYTFIMNMP-FQPN---PIVLRALLSASSI----HDAKYQDGVGNEVRR 426 (514)
Q Consensus 359 ~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~-~~p~---~~~~~~l~~~~~~----~~~~~~~~~a~~~~~ 426 (514)
+. -+...+..|...|.. .+++++|.+.|++.. ..|. ...+..|...|.. .++ .++|...++
T Consensus 81 ~~----g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d---~~~A~~~~~ 153 (212)
T 3rjv_A 81 EA----GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPED---DVKASEYFK 153 (212)
T ss_dssp HT----TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCC---HHHHHHHHH
T ss_pred HC----CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCC---HHHHHHHHH
Confidence 53 245566667777766 778888888888876 3332 6777777777776 566 888888888
Q ss_pred HHHhcCCCCCchHHHHHHHHHhc-C-----CHHHHHHHHHHHHhCCC
Q 046312 427 RLLELEPRGSQNLVIVANKYAEV-G-----MWEKVSNVRRFMKNVGL 467 (514)
Q Consensus 427 ~~~~~~p~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~m~~~~~ 467 (514)
++.+. |.++.++..|+.+|... | +.++|...+++..+.|.
T Consensus 154 ~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 154 GSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 88887 44566788888888764 3 78999999988877664
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=2.4e-07 Score=93.65 Aligned_cols=159 Identities=9% Similarity=-0.037 Sum_probs=117.4
Q ss_pred cCCHHHHHHHHHhcCc---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 046312 278 CGAVGCARLLFSRMEE---INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYF 354 (514)
Q Consensus 278 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 354 (514)
.|++++|.+.|++..+ .+...|..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 3677777777777664 346778888888888999999999999888753 234677888888899999999999999
Q ss_pred HHHHHhhCCCC-chHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhc---CCCCcchHHHHHHHHH
Q 046312 355 HEMEHVHGIKP-MRIHYHTMADILARAGHLKEAYTFIMNMP--FQPNPIVLRALLSASSIH---DAKYQDGVGNEVRRRL 428 (514)
Q Consensus 355 ~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~---~~~~~~~~a~~~~~~~ 428 (514)
++..+. .| +...+..+..+|.+.|++++|.+.+++.. .+.+...+..+...+... |+ .++|.+.++.+
T Consensus 81 ~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~---~~~A~~~~~~a 154 (568)
T 2vsy_A 81 QQASDA---APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRA---LDVLSAQVRAA 154 (568)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTT---HHHHHHHHHHH
T ss_pred HHHHhc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcccc---HHHHHHHHHHH
Confidence 998875 34 46788888899999999999999998875 334577888888899998 77 99999999999
Q ss_pred HhcCCCCCchHHHHH
Q 046312 429 LELEPRGSQNLVIVA 443 (514)
Q Consensus 429 ~~~~p~~~~~~~~l~ 443 (514)
.+.+|.+...+..+.
T Consensus 155 l~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 155 VAQGVGAVEPFAFLS 169 (568)
T ss_dssp HHHTCCCSCHHHHTT
T ss_pred HhcCCcccChHHHhC
Confidence 999998887777665
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.82 E-value=2.2e-07 Score=80.46 Aligned_cols=133 Identities=12% Similarity=0.012 Sum_probs=71.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCc---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCc
Q 046312 270 ALIDMYAKCGAVGCARLLFSRMEE---INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGM 346 (514)
Q Consensus 270 ~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 346 (514)
.+..+|.+.|++++|+..|++..+ .+...|..+...+...|++++|...|++.++.. +-+..++..+..+|...|+
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAE 137 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhH
Confidence 355666666666666666666553 245566666666666677777777776666632 2234455555555544433
Q ss_pred --HHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCHHHHHHHH
Q 046312 347 --VEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP-FQPNPIVLRALL 406 (514)
Q Consensus 347 --~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~ 406 (514)
.+.+...++... ...|....+.....++...|++++|...|++.. ..|+......+.
T Consensus 138 ~~~~~~~~~~~~~~---~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l~ 197 (208)
T 3urz_A 138 QEKKKLETDYKKLS---SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLD 197 (208)
T ss_dssp HHHHHHHHHHC------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHh---CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 233344444332 222222233334445555667777777776654 556655444433
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.81 E-value=3e-07 Score=79.50 Aligned_cols=137 Identities=7% Similarity=0.023 Sum_probs=89.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCc-hHHHHHHHHHHH
Q 046312 300 SAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPM-RIHYHTMADILA 378 (514)
Q Consensus 300 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~ 378 (514)
..+..+|.+.|++++|+..|++.++.. +-+...+..+..++...|++++|...|+++.+. .|+ ...+..+...|.
T Consensus 58 ~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~ 133 (208)
T 3urz_A 58 TELALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQL---EADNLAANIFLGNYYY 133 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHH
Confidence 346777888888888888888887742 234566777778888888888888888888764 444 566777777765
Q ss_pred hcCC--HHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHH
Q 046312 379 RAGH--LKEAYTFIMNMPFQPNP--IVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANK 445 (514)
Q Consensus 379 ~~g~--~~~A~~~~~~~~~~p~~--~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 445 (514)
..|+ .+.+...++... .|+. ..+.....++...|+ +++|...++++.++.|+. .....+...
T Consensus 134 ~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~~~~~~~---~~~A~~~~~~al~l~P~~-~~~~~l~~i 199 (208)
T 3urz_A 134 LTAEQEKKKLETDYKKLS-SPTKMQYARYRDGLSKLFTTR---YEKARNSLQKVILRFPST-EAQKTLDKI 199 (208)
T ss_dssp HHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHT---HHHHHHHHHHHTTTSCCH-HHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHccC---HHHHHHHHHHHHHhCCCH-HHHHHHHHH
Confidence 5543 345556666554 3333 233334555666777 888888888888888863 344444443
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=8.5e-08 Score=97.01 Aligned_cols=151 Identities=13% Similarity=0.014 Sum_probs=117.6
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCc-hHHHHHHHHHHHhcCCHHHHH
Q 046312 309 HGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPM-RIHYHTMADILARAGHLKEAY 387 (514)
Q Consensus 309 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~ 387 (514)
.|++++|...+++..+.. +-+...+..+...+...|++++|...+++..+. .|+ ...+..+...|.+.|++++|.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~ 77 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL---HPGHPEAVARLGRVRWTQQRHAEAA 77 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT---STTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 478899999999988742 234677888899999999999999999999853 554 778889999999999999999
Q ss_pred HHHHhCC--CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhc---CCHHHHHHHHHHH
Q 046312 388 TFIMNMP--FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEV---GMWEKVSNVRRFM 462 (514)
Q Consensus 388 ~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~---g~~~~A~~~~~~m 462 (514)
+.+++.. .+.+...+..+...+...|+ +++|.+.++.+.+.+|++..++..++.++... |++++|.+.+++.
T Consensus 78 ~~~~~al~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 78 VLLQQASDAAPEHPGIALWLGHALEDAGQ---AEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 9999885 33467889999999999999 99999999999999999999999999999999 9999999999988
Q ss_pred HhCC
Q 046312 463 KNVG 466 (514)
Q Consensus 463 ~~~~ 466 (514)
.+.+
T Consensus 155 l~~~ 158 (568)
T 2vsy_A 155 VAQG 158 (568)
T ss_dssp HHHT
T ss_pred HhcC
Confidence 7554
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.78 E-value=1.9e-07 Score=86.31 Aligned_cols=151 Identities=13% Similarity=-0.012 Sum_probs=71.1
Q ss_pred HHHHcCCCHHHHHHHhhccCC-----CC----hhhHHHHHHHHHhCCChhHHHHHHHHHHHCC---CCCC--HHHHHHHH
Q 046312 172 RFYGSCRRKRDACKVFDDMCE-----RS----VVSWNVIITVCVENLWLGEAVGYFVKMKDLG---FEPD--ETTMLVVL 237 (514)
Q Consensus 172 ~~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~---~~p~--~~t~~~ll 237 (514)
..|...|++++|...|.+... .+ ..+|+.+...|.+.|++++|+..|++..+.- -.+. ..++..+.
T Consensus 44 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg 123 (307)
T 2ifu_A 44 VAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAG 123 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345555666666555554411 01 2355556666666666666666666654320 0111 23444555
Q ss_pred HHHhccCChHHHHHHHHHHHHhCCCC-----chhHHHHHHHHHHhcCCHHHHHHHHHhcCc-----CC----HHHHHHHH
Q 046312 238 SACTELGNLSLGKWVHLQLIERGTVL-----NCQLGTALIDMYAKCGAVGCARLLFSRMEE-----IN----VWTWSAMI 303 (514)
Q Consensus 238 ~~~~~~g~~~~a~~~~~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li 303 (514)
..|.. |++++|...+++..+..... ...++..+...|.+.|++++|+..|++..+ .+ ...+..+.
T Consensus 124 ~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g 202 (307)
T 2ifu_A 124 KLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQV 202 (307)
T ss_dssp HHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Confidence 55555 66666666665554431100 123444445555555555555555544432 00 11333333
Q ss_pred HHHHHcCChHHHHHHHHHHH
Q 046312 304 LGLAQHGYAEEALELFSNMK 323 (514)
Q Consensus 304 ~~~~~~~~~~~a~~~~~~m~ 323 (514)
..+...|++++|...|++..
T Consensus 203 ~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 203 LVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHh
Confidence 44444455555555555444
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.75 E-value=3.2e-07 Score=79.60 Aligned_cols=172 Identities=11% Similarity=-0.033 Sum_probs=121.9
Q ss_pred HHHHHcccCCCCCcccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHhccC----CchHHHHHHHHHH
Q 046312 81 ARSILCNYVNDSVPIPWNNLIRGYAWSDRPREAVWVFIDMKRRGIKPTEFTYPFVLKACAEIS----GLNEGMQVQANVT 156 (514)
Q Consensus 81 A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g----~~~~a~~~~~~~~ 156 (514)
|...|++.....++.++..+-..|...+++++|++.|++..+.| +...+..+...+.. + +.++|...|++..
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 44555544325567777778888888888888888888887765 45666677777766 6 7888888888887
Q ss_pred HhCCCCCcchHHHHHHHHHc----CCCHHHHHHHhhccCCCC-----hhhHHHHHHHHHh----CCChhHHHHHHHHHHH
Q 046312 157 KSGLDSDVYTNNNLVRFYGS----CRRKRDACKVFDDMCERS-----VVSWNVIITVCVE----NLWLGEAVGYFVKMKD 223 (514)
Q Consensus 157 ~~~~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~~~~~~-----~~~~~~li~~~~~----~~~~~~a~~~~~~m~~ 223 (514)
+.| +...+..|...|.. .+++++|.++|++..+.+ ..++..|...|.. .+++++|...|++..+
T Consensus 81 ~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 157 (212)
T 3rjv_A 81 EAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSS 157 (212)
T ss_dssp HTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH
T ss_pred HCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 665 45667777777776 778888888888875543 4677777777877 7788888888888877
Q ss_pred CCCCCCHHHHHHHHHHHhcc------CChHHHHHHHHHHHHhCC
Q 046312 224 LGFEPDETTMLVVLSACTEL------GNLSLGKWVHLQLIERGT 261 (514)
Q Consensus 224 ~~~~p~~~t~~~ll~~~~~~------g~~~~a~~~~~~~~~~~~ 261 (514)
.+ .+...+..|-..|... .+.++|...++...+.|.
T Consensus 158 ~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 158 LS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp TS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred cC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 62 2333455555555432 278888888888877764
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.73 E-value=9.8e-08 Score=80.17 Aligned_cols=156 Identities=11% Similarity=-0.055 Sum_probs=84.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCc---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 046312 268 GTALIDMYAKCGAVGCARLLFSRMEE---INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHA 344 (514)
Q Consensus 268 ~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 344 (514)
+..+...+...|++++|...|++..+ .+...+..+...+...|++++|...+++..... |+...+..+....
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~--- 83 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLE--- 83 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHH---
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHH---
Confidence 34455566666777777777766664 345566666666666677777666666655432 2322211111000
Q ss_pred CcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCCCcchHHH
Q 046312 345 GMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP-FQP-NPIVLRALLSASSIHDAKYQDGVGN 422 (514)
Q Consensus 345 ~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~~~~a~ 422 (514)
+...+...+|...+++.. ..| +...+..+...+...|+ +++|.
T Consensus 84 --------------------------------~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~---~~~A~ 128 (176)
T 2r5s_A 84 --------------------------------LHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGR---DEEAL 128 (176)
T ss_dssp --------------------------------HHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC---HHHHH
T ss_pred --------------------------------HHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHccc---HHHHH
Confidence 001111112334444432 223 35555556666666666 66666
Q ss_pred HHHHHHHhcCCCC--CchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 046312 423 EVRRRLLELEPRG--SQNLVIVANKYAEVGMWEKVSNVRRFMK 463 (514)
Q Consensus 423 ~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 463 (514)
..++.+.+.+|+. ..++..++.+|...|+.++|...|++..
T Consensus 129 ~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 129 ELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 6666666666653 3356666777777777777776666543
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.72 E-value=7.1e-07 Score=78.23 Aligned_cols=205 Identities=10% Similarity=-0.042 Sum_probs=116.5
Q ss_pred hhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCC-C-CHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCch--hHHHH
Q 046312 195 VVSWNVIITVCVENLWLGEAVGYFVKMKDLGFE-P-DETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNC--QLGTA 270 (514)
Q Consensus 195 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~ 270 (514)
...+..+...+.+.|++++|+..|+++.+.... | ....+..+..++.+.|++++|...++.+.+....... ..+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 344555667788888888888888888875321 1 1346667778888888888888888888877543221 23444
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHH
Q 046312 271 LIDMYAKCGAVGCARLLFSRMEEINVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYV-TFLGVLCACNHAGMVED 349 (514)
Q Consensus 271 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~ 349 (514)
+..++...|.. .+ ..|..+...+...|++++|...|+++++. .|+.. .......
T Consensus 84 ~g~~~~~~~~~-----~~--------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~---------- 138 (225)
T 2yhc_A 84 RGLTNMALDDS-----AL--------QGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKR---------- 138 (225)
T ss_dssp HHHHHHHHHC---------------------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHH----------
T ss_pred HHHHHHhhhhh-----hh--------hhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHH----------
Confidence 44444433211 00 11222333344567888888888888874 34422 2111100
Q ss_pred HHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCH----HHHHHHHHHHHhcCCCCcchHHHHH
Q 046312 350 GYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP-FQPNP----IVLRALLSASSIHDAKYQDGVGNEV 424 (514)
Q Consensus 350 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~~----~~~~~l~~~~~~~~~~~~~~~a~~~ 424 (514)
...+...+.. ....+...|.+.|++++|...|+++. ..|+. ..+..+..++...|+ .+.|.+.
T Consensus 139 l~~~~~~~~~---------~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~---~~~A~~~ 206 (225)
T 2yhc_A 139 LVFLKDRLAK---------YEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQM---NAQAEKV 206 (225)
T ss_dssp HHHHHHHHHH---------HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTC---HHHHHHH
T ss_pred HHHHHHHHHH---------HHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCC---cHHHHHH
Confidence 0001111110 11235566777777888777777764 33332 456667777777777 7777777
Q ss_pred HHHHHhcCCCCC
Q 046312 425 RRRLLELEPRGS 436 (514)
Q Consensus 425 ~~~~~~~~p~~~ 436 (514)
++.+....|++.
T Consensus 207 ~~~l~~~~~~~~ 218 (225)
T 2yhc_A 207 AKIIAANSSNTL 218 (225)
T ss_dssp HHHHHHCCSCCC
T ss_pred HHHHHhhCCCch
Confidence 777777777654
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.72 E-value=1.5e-07 Score=76.49 Aligned_cols=102 Identities=11% Similarity=0.003 Sum_probs=89.1
Q ss_pred CCCCc-hHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCch
Q 046312 362 GIKPM-RIHYHTMADILARAGHLKEAYTFIMNMP-FQP-NPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQN 438 (514)
Q Consensus 362 ~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 438 (514)
.+.|+ ...+..+...+.+.|++++|...|+++. ..| +...|..+..++...|+ +++|...++++.+++|+++.+
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~---~~~Ai~~~~~al~l~P~~~~~ 106 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQ---FQQAADLYAVAFALGKNDYTP 106 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHSSSCCHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcc---HHHHHHHHHHHHhhCCCCcHH
Confidence 44565 5567778888999999999999999886 344 67888999999999999 999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 046312 439 LVIVANKYAEVGMWEKVSNVRRFMKNVG 466 (514)
Q Consensus 439 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 466 (514)
|..++.+|.+.|++++|...|++..+..
T Consensus 107 ~~~lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 107 VFHTGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999988754
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.71 E-value=3e-05 Score=70.66 Aligned_cols=214 Identities=6% Similarity=-0.004 Sum_probs=128.8
Q ss_pred hCCC-chHHHHHHHHHHHcCCCCCcc-hHHHHHHHHhccC--CchHHHHHHHHHHHhCCCCCcchHHHHHHHH----HcC
Q 046312 106 WSDR-PREAVWVFIDMKRRGIKPTEF-TYPFVLKACAEIS--GLNEGMQVQANVTKSGLDSDVYTNNNLVRFY----GSC 177 (514)
Q Consensus 106 ~~g~-~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~----~~~ 177 (514)
+.|. .++|+++++.+... .|+.. .|+.--.++...| +++++++.++.+.... +-+..+|+.-..++ ...
T Consensus 44 ~~~e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l 120 (306)
T 3dra_A 44 KAEEYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELN 120 (306)
T ss_dssp HTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHT
T ss_pred HcCCCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhc
Confidence 4444 45788888888774 45554 4676666777777 8888888888887764 33555666555444 444
Q ss_pred ---CCHHHHHHHhhcc---CCCChhhHHHHHHHHHhCCChh--HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC----
Q 046312 178 ---RRKRDACKVFDDM---CERSVVSWNVIITVCVENLWLG--EAVGYFVKMKDLGFEPDETTMLVVLSACTELGN---- 245 (514)
Q Consensus 178 ---~~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~~~~~--~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~---- 245 (514)
++++++..+++++ .+.+-.+|+.-.-.+.+.|.++ ++++.++++.+.. .-|...++.-...+...+.
T Consensus 121 ~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~ 199 (306)
T 3dra_A 121 NNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATD 199 (306)
T ss_dssp TTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCH
T ss_pred cccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchh
Confidence 6777777777777 3345566666666666677777 7778888877764 3456666655555555554
Q ss_pred --hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH-HHHHHHhcCc------CCHHHHHHHHHHHHHcCChHHHH
Q 046312 246 --LSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGC-ARLLFSRMEE------INVWTWSAMILGLAQHGYAEEAL 316 (514)
Q Consensus 246 --~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~a~ 316 (514)
++++.+.++.++...+. |...++-+...+.+.|+... +..+.+++.+ .+...+..+...|.+.|+.++|.
T Consensus 200 ~~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~ 278 (306)
T 3dra_A 200 NTIDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESR 278 (306)
T ss_dssp HHHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHH
Confidence 56666666666665532 55555555555555554322 3334443332 23445555555555555555555
Q ss_pred HHHHHHHH
Q 046312 317 ELFSNMKN 324 (514)
Q Consensus 317 ~~~~~m~~ 324 (514)
++++.+.+
T Consensus 279 ~~~~~l~~ 286 (306)
T 3dra_A 279 TVYDLLKS 286 (306)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 55555543
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=9.7e-08 Score=77.77 Aligned_cols=110 Identities=8% Similarity=-0.092 Sum_probs=48.3
Q ss_pred HHHHHHHHHcCCCHHHHHHHhhcc---CCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 046312 167 NNNLVRFYGSCRRKRDACKVFDDM---CERSVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTEL 243 (514)
Q Consensus 167 ~~~li~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~ 243 (514)
+..+...|.+.|++++|.+.|++. .+.+..+|..+..+|.+.|++++|+..|++..+.. +-+...+..+...+.+.
T Consensus 34 ~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~ 112 (150)
T 4ga2_A 34 GFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELN-PTQKDLVLKIAELLCKN 112 (150)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 334444444455555554444444 22234445555555555555555555555544432 12334444444445555
Q ss_pred CChHHHHHH-HHHHHHhCCCCchhHHHHHHHHHHhc
Q 046312 244 GNLSLGKWV-HLQLIERGTVLNCQLGTALIDMYAKC 278 (514)
Q Consensus 244 g~~~~a~~~-~~~~~~~~~~~~~~~~~~li~~~~~~ 278 (514)
|+.+++... ++...+..+ -++.+|......+...
T Consensus 113 ~~~~~aa~~~~~~al~l~P-~~~~~~~l~~~ll~~~ 147 (150)
T 4ga2_A 113 DVTDGRAKYWVERAAKLFP-GSPAVYKLKEQLLDCE 147 (150)
T ss_dssp CSSSSHHHHHHHHHHHHST-TCHHHHHHHHHHHHTC
T ss_pred CChHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHh
Confidence 554433322 344444331 1333444444433333
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.66 E-value=2.3e-07 Score=72.88 Aligned_cols=93 Identities=9% Similarity=-0.009 Sum_probs=46.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 046312 369 HYHTMADILARAGHLKEAYTFIMNMP--FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKY 446 (514)
Q Consensus 369 ~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 446 (514)
.+......|.+.|++++|++.|++.. .+.+...|..+..++...|+ +++|...++++++++|+++.+|..++.+|
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~---~~~A~~~~~~al~~~p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLME---FQRALDDCDTCIRLDSKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhcc---HHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 34444444555555555555554443 22234444445555555555 55555555555555555555555555555
Q ss_pred HhcCCHHHHHHHHHHHHh
Q 046312 447 AEVGMWEKVSNVRRFMKN 464 (514)
Q Consensus 447 ~~~g~~~~A~~~~~~m~~ 464 (514)
...|++++|.+.|++..+
T Consensus 92 ~~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQ 109 (126)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHH
Confidence 555555555555555443
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.65 E-value=6.7e-07 Score=77.47 Aligned_cols=97 Identities=9% Similarity=-0.027 Sum_probs=48.1
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCC-------
Q 046312 366 MRIHYHTMADILARAGHLKEAYTFIMNMP--FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGS------- 436 (514)
Q Consensus 366 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~------- 436 (514)
+...+..+...|.+.|++++|.+.+++.. .+.+...+..+...+...|+ ++.|.+.++.+.+..|.+.
T Consensus 36 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~---~~~A~~~~~~al~~~~~~~~~~~~~~ 112 (213)
T 1hh8_A 36 HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEK---YDLAIKDLKEALIQLRGNQLIDYKIL 112 (213)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTTTTCSEEECGGG
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHccc---HHHHHHHHHHHHHhCCCccHHHHHHh
Confidence 33344444444444444444444444432 12233444444444444444 4555555555544444433
Q ss_pred ---------chHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 046312 437 ---------QNLVIVANKYAEVGMWEKVSNVRRFMKNV 465 (514)
Q Consensus 437 ---------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 465 (514)
.++..++.+|.+.|++++|.+.+++..+.
T Consensus 113 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 113 GLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp TBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred ccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 55566666666666666666666666544
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.65 E-value=1.2e-06 Score=75.85 Aligned_cols=125 Identities=11% Similarity=-0.123 Sum_probs=80.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcH
Q 046312 268 GTALIDMYAKCGAVGCARLLFSRMEEINVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMV 347 (514)
Q Consensus 268 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 347 (514)
+..+...+...|++++|...|++..+++...|..+...+...|++++|...+++..+.. +.+...+..+..++...|++
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~ 87 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 87 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccH
Confidence 34455666777777777777777777777777777777777777777777777777642 23455666677777777777
Q ss_pred HHHHHHHHHHHHhhCCC-------------C-chHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 046312 348 EDGYRYFHEMEHVHGIK-------------P-MRIHYHTMADILARAGHLKEAYTFIMNM 393 (514)
Q Consensus 348 ~~a~~~~~~~~~~~~~~-------------p-~~~~~~~li~~~~~~g~~~~A~~~~~~~ 393 (514)
++|...+++..+...-. | ....+..+..+|.+.|++++|.+.|+++
T Consensus 88 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 147 (213)
T 1hh8_A 88 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA 147 (213)
T ss_dssp HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 77777777776531111 1 1134445555555555555555555554
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.63 E-value=2e-05 Score=71.77 Aligned_cols=223 Identities=10% Similarity=-0.009 Sum_probs=110.9
Q ss_pred HHHHHHHhhcChhHHHHHHHHHHHhCCCCChHHHHHHHHhcccCCCC--ChHHHHHHHcccCC--CCCcccHHHHHHHH-
Q 046312 30 QCLSFLKLCCSKKHLYQIHAQIQVSGLQNDAQILKELVRFCTLSSSK--NLTYARSILCNYVN--DSVPIPWNNLIRGY- 104 (514)
Q Consensus 30 ~~~~ll~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~g--~~~~A~~~~~~~~~--~~~~~~~~~li~~~- 104 (514)
.+.+++......+++..+.+.++... +-+..+|+.--..+. ..| ++++++.+++.+.. +.+..+|+.--..+
T Consensus 38 ~~~a~~~~~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~--~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~ 114 (306)
T 3dra_A 38 LLLALMKAEEYSERALHITELGINEL-ASHYTIWIYRFNILK--NLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIG 114 (306)
T ss_dssp HHHHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH--TCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHH--HcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHH
Confidence 33344444344556666666665544 223355555555555 555 77777777766531 23334455433333
Q ss_pred ---HhC---CCchHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCCch--HHHHHHHHHHHhCCCCCcchHHHHHHHHHc
Q 046312 105 ---AWS---DRPREAVWVFIDMKRRGIKPTEFTYPFVLKACAEISGLN--EGMQVQANVTKSGLDSDVYTNNNLVRFYGS 176 (514)
Q Consensus 105 ---~~~---g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~--~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 176 (514)
... +++++++++++.+.+.. +-|..+|+.-.-++...|.++ ++++.++++.+.. +-|...|+....++..
T Consensus 115 ~~~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~ 192 (306)
T 3dra_A 115 QIMELNNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFS 192 (306)
T ss_dssp HHHHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHS
T ss_pred HHHHhccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 333 56667777777766642 334445555555555666666 6666677666664 3355555555555555
Q ss_pred CCC------HHHHHHHhhcc---CCCChhhHHHHHHHHHhCCChhH-HHHHHHHHHHCC--CCCCHHHHHHHHHHHhccC
Q 046312 177 CRR------KRDACKVFDDM---CERSVVSWNVIITVCVENLWLGE-AVGYFVKMKDLG--FEPDETTMLVVLSACTELG 244 (514)
Q Consensus 177 ~~~------~~~A~~~~~~~---~~~~~~~~~~li~~~~~~~~~~~-a~~~~~~m~~~~--~~p~~~t~~~ll~~~~~~g 244 (514)
.++ ++++.+.+++. ...|...|+.+-..+.+.|+... +..+..++.+.+ -..+...+..+..++.+.|
T Consensus 193 l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~ 272 (306)
T 3dra_A 193 KKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQK 272 (306)
T ss_dssp SGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTT
T ss_pred ccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccC
Confidence 544 44555554444 22344455555444444444322 223333332211 0123344444444444444
Q ss_pred ChHHHHHHHHHHH
Q 046312 245 NLSLGKWVHLQLI 257 (514)
Q Consensus 245 ~~~~a~~~~~~~~ 257 (514)
+.++|.++++.+.
T Consensus 273 ~~~~A~~~~~~l~ 285 (306)
T 3dra_A 273 KYNESRTVYDLLK 285 (306)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 4444444444443
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.62 E-value=3.6e-06 Score=77.01 Aligned_cols=160 Identities=11% Similarity=-0.020 Sum_probs=113.4
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCC-CCCCHH----HHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCc----hHHHHH
Q 046312 302 MILGLAQHGYAEEALELFSNMKNSS-ISPNYV----TFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPM----RIHYHT 372 (514)
Q Consensus 302 li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~ 372 (514)
.+..+...|++++|..++++..+.. ..|+.. .+..+...+...|++++|...++++.+...-.++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 3566778888888888888877632 122211 2334556667777888888888888763111222 235788
Q ss_pred HHHHHHhcCCHHHHHHHHHhCC-----CCCC----HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCC------Cc
Q 046312 373 MADILARAGHLKEAYTFIMNMP-----FQPN----PIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRG------SQ 437 (514)
Q Consensus 373 li~~~~~~g~~~~A~~~~~~~~-----~~p~----~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~ 437 (514)
+...|...|++++|...++++. ...+ ..++..+...|...|+ +++|...++++.++.+.. ..
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~---y~~A~~~~~~al~~~~~~~~~~~~~~ 237 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSR---YEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHTTBCTTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHcCcHHHHHH
Confidence 8888888888888888887763 1112 2467788888899999 999999888888765322 45
Q ss_pred hHHHHHHHHHhcCC-HHHHHHHHHHHHh
Q 046312 438 NLVIVANKYAEVGM-WEKVSNVRRFMKN 464 (514)
Q Consensus 438 ~~~~l~~~~~~~g~-~~~A~~~~~~m~~ 464 (514)
+|..++.+|.+.|+ +++|.+.+++...
T Consensus 238 ~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 238 LYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 68899999999995 6999999988753
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=2.5e-07 Score=75.10 Aligned_cols=102 Identities=7% Similarity=-0.085 Sum_probs=83.1
Q ss_pred CCCCc-hHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCch
Q 046312 362 GIKPM-RIHYHTMADILARAGHLKEAYTFIMNMP--FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQN 438 (514)
Q Consensus 362 ~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 438 (514)
.+.|+ ...+..+...+.+.|++++|...|+++. .+.+...|..+..++...|+ +++|...++.+.+++|+++.+
T Consensus 15 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~l~p~~~~~ 91 (148)
T 2vgx_A 15 EISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQ---YDLAIHSYSYGAVMDIXEPRF 91 (148)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHSTTCTHH
T ss_pred cCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhh---HHHHHHHHHHHHhcCCCCchH
Confidence 33454 5566677788888899999998888875 33467788888888888898 999999999999999988888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 046312 439 LVIVANKYAEVGMWEKVSNVRRFMKNVG 466 (514)
Q Consensus 439 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 466 (514)
+..++.+|...|++++|.+.|++..+..
T Consensus 92 ~~~lg~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 92 PFHAAECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 8899999999999999999998887643
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.60 E-value=1.5e-05 Score=72.94 Aligned_cols=158 Identities=9% Similarity=-0.023 Sum_probs=90.9
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCC-CCCCHH----HHHHHHHHHhccCChHHHHHHHHHHHHhCCCC-c----hhHHHH
Q 046312 201 IITVCVENLWLGEAVGYFVKMKDLG-FEPDET----TMLVVLSACTELGNLSLGKWVHLQLIERGTVL-N----CQLGTA 270 (514)
Q Consensus 201 li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~----t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~----~~~~~~ 270 (514)
.+..+...|++++|..++++..+.. ..|+.. .+..+...+...|++++|...++.+.+..... + ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 3566778888888888888877642 122211 22335555666677888888887777643221 1 224666
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCc------C----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCC-HHHHH
Q 046312 271 LIDMYAKCGAVGCARLLFSRMEE------I----NVWTWSAMILGLAQHGYAEEALELFSNMKNS----SISPN-YVTFL 335 (514)
Q Consensus 271 li~~~~~~g~~~~A~~~~~~~~~------~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~-~~~~~ 335 (514)
+..+|...|++++|...|+++.+ . ...++..+...|.+.|++++|...+++.++. +..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 66666677777766666666542 1 1234555566666666666666666655431 11111 34455
Q ss_pred HHHHHHhccC-cHHHHHHHHHHHH
Q 046312 336 GVLCACNHAG-MVEDGYRYFHEME 358 (514)
Q Consensus 336 ~ll~~~~~~~-~~~~a~~~~~~~~ 358 (514)
.+..++...| .+++|...+++..
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHH
Confidence 5555555555 3456655555544
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.59 E-value=9e-07 Score=73.04 Aligned_cols=126 Identities=8% Similarity=-0.034 Sum_probs=96.4
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHH
Q 046312 333 TFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP--FQPNPIVLRALLSASS 410 (514)
Q Consensus 333 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~ 410 (514)
.+..+...+...|+++.|...+++..+. .+.+...+..+...+...|++++|.+.+++.. .+.+...+..+...+.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 4555666677778888888888877764 12346677777788888888888888887765 3345677888888888
Q ss_pred hcCCCCcchHHHHHHHHHHhcCCCCCchHH--HHHHHHHhcCCHHHHHHHHHHHH
Q 046312 411 IHDAKYQDGVGNEVRRRLLELEPRGSQNLV--IVANKYAEVGMWEKVSNVRRFMK 463 (514)
Q Consensus 411 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~--~l~~~~~~~g~~~~A~~~~~~m~ 463 (514)
..|+ ++.|...++.+.+..|.+...+. .++..+.+.|++++|.+.++...
T Consensus 93 ~~~~---~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 93 ALGK---FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HTTC---HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Hhcc---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 9999 99999999999999998877774 44444888899999999988765
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.59 E-value=2e-06 Score=78.71 Aligned_cols=164 Identities=11% Similarity=-0.052 Sum_probs=106.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHhccCcHHHHHHHHHHHHHhhC--CCCc--hH
Q 046312 298 TWSAMILGLAQHGYAEEALELFSNMKNSSISPNY-----VTFLGVLCACNHAGMVEDGYRYFHEMEHVHG--IKPM--RI 368 (514)
Q Consensus 298 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~p~--~~ 368 (514)
.+...+..+...|++++|.+.+.+..+.....+. ..+..+...+...|++++|...+++..+... ..+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3444556667777777777777776664221111 1233344556667778888877777664211 1111 34
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCC----CCCC-----HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCC--C--
Q 046312 369 HYHTMADILARAGHLKEAYTFIMNMP----FQPN-----PIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPR--G-- 435 (514)
Q Consensus 369 ~~~~li~~~~~~g~~~~A~~~~~~~~----~~p~-----~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~--~-- 435 (514)
+|+.+...|...|++++|...++++. ..|+ ..++..+...|...|+ +++|...++++.++.++ +
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~---y~~Al~~~~kal~~~~~~~~~~ 233 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSR---YEESLYQVNKAIEISCRINSMA 233 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHTTBCS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhh---HHHHHHHHHHHHHHHHhcCcHH
Confidence 67777777888888888877777653 1122 1467777778888888 88888888887765422 1
Q ss_pred --CchHHHHHHHHHhcCCHHHH-HHHHHHHHh
Q 046312 436 --SQNLVIVANKYAEVGMWEKV-SNVRRFMKN 464 (514)
Q Consensus 436 --~~~~~~l~~~~~~~g~~~~A-~~~~~~m~~ 464 (514)
..+|..++.+|.+.|++++| ...+++...
T Consensus 234 ~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 234 LIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp SHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 34677899999999999999 777777653
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.59 E-value=7.1e-07 Score=70.09 Aligned_cols=109 Identities=11% Similarity=-0.068 Sum_probs=82.8
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHH
Q 046312 332 VTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP--FQPNPIVLRALLSAS 409 (514)
Q Consensus 332 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~ 409 (514)
..+......+.+.|++++|...|++..+.. +.+...|..+..+|.+.|++++|++.+++.. .+.+...|..+..++
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD--PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 446666677778888888888888877641 3346677778888888888888888888775 334577788888888
Q ss_pred HhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHH
Q 046312 410 SIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANK 445 (514)
Q Consensus 410 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 445 (514)
...|+ +++|.+.++++.+++|++..++..|..+
T Consensus 92 ~~~~~---~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 92 VAMRE---WSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHTTC---HHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHCCC---HHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 88888 8888888888888888887777666554
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.56 E-value=8.7e-07 Score=75.97 Aligned_cols=81 Identities=12% Similarity=-0.026 Sum_probs=35.7
Q ss_pred CCCHHHHHH---HhhccCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHhccCChHH
Q 046312 177 CRRKRDACK---VFDDMCERSVVSWNVIITVCVENLWLGEAVGYFVKMKDL----GFEP-DETTMLVVLSACTELGNLSL 248 (514)
Q Consensus 177 ~~~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~t~~~ll~~~~~~g~~~~ 248 (514)
.|++++|.+ ++..-+.....++..+...+...|++++|...+++..+. +..| ...++..+...+...|++++
T Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 84 (203)
T 3gw4_A 5 AHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDA 84 (203)
T ss_dssp --CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred cccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence 445555555 332222223344555555555555555555555554431 1111 12234444444555555555
Q ss_pred HHHHHHHHH
Q 046312 249 GKWVHLQLI 257 (514)
Q Consensus 249 a~~~~~~~~ 257 (514)
|...+++..
T Consensus 85 A~~~~~~al 93 (203)
T 3gw4_A 85 ARRCFLEER 93 (203)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555554443
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.54 E-value=4.5e-06 Score=76.40 Aligned_cols=162 Identities=6% Similarity=-0.133 Sum_probs=108.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCc--C-CH------HHHHHHHHHHHHcCChHHHHHHHHHHHHCCC---CCC--HH
Q 046312 267 LGTALIDMYAKCGAVGCARLLFSRMEE--I-NV------WTWSAMILGLAQHGYAEEALELFSNMKNSSI---SPN--YV 332 (514)
Q Consensus 267 ~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~------~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~---~p~--~~ 332 (514)
.+...+..+...|++++|.+.+.+..+ + .. ..+..+...+...|++++|+..+++..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 344556677777888888777765442 1 11 2233455566777888888888888775321 111 34
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCc-----hHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-------CH
Q 046312 333 TFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPM-----RIHYHTMADILARAGHLKEAYTFIMNMP-FQP-------NP 399 (514)
Q Consensus 333 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-------~~ 399 (514)
+++.+...|...|++++|..+++++.+.....|+ ..++..+...|.+.|++++|.+.+++.. ..+ -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 6777888888888888888888887732111222 2477788888888888888888887763 111 15
Q ss_pred HHHHHHHHHHHhcCCCCcchHH-HHHHHHHHhc
Q 046312 400 IVLRALLSASSIHDAKYQDGVG-NEVRRRLLEL 431 (514)
Q Consensus 400 ~~~~~l~~~~~~~~~~~~~~~a-~~~~~~~~~~ 431 (514)
.+|..+...+...|+ .++| ...++++..+
T Consensus 237 ~~~~~lg~~y~~~g~---~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 237 QLYYQRGECLRKLEY---EEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHTTC---CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCC---cHHHHHHHHHHHHHH
Confidence 677888888888888 8888 6667766553
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.53 E-value=1.6e-06 Score=67.34 Aligned_cols=113 Identities=13% Similarity=0.135 Sum_probs=69.6
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHH
Q 046312 332 VTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP--FQPNPIVLRALLSAS 409 (514)
Q Consensus 332 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~ 409 (514)
..+..+...+...|++++|..+++++.+.. +.+...+..+...+.+.|++++|...++++. .+.+..++..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 445555555666666666666666665531 2234555566666666666666666666654 233455666666667
Q ss_pred HhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhc
Q 046312 410 SIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEV 449 (514)
Q Consensus 410 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 449 (514)
...|+ ++.|...++.+.+..|+++..+..++.++.+.
T Consensus 88 ~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 88 YKQGD---YDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHTTC---HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhcC---HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Confidence 77777 77777777777777777666666666665544
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.51 E-value=5.5e-07 Score=75.52 Aligned_cols=120 Identities=7% Similarity=0.036 Sum_probs=80.3
Q ss_pred hccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHH-HHhcCCCCcc
Q 046312 342 NHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP--FQPNPIVLRALLSA-SSIHDAKYQD 418 (514)
Q Consensus 342 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~-~~~~~~~~~~ 418 (514)
...|++++|...+++..+.. +.+...+..+...|...|++++|...|+++. .+.+...+..+... +...|+ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~---~ 95 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQ---H 95 (177)
T ss_dssp C-----CCCCHHHHHHHHHC--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTT---C
T ss_pred hhccCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCC---c
Confidence 34566777777777766541 2345666677777777777777777777764 22355666666666 666677 7
Q ss_pred --hHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 046312 419 --GVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNVG 466 (514)
Q Consensus 419 --~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 466 (514)
+.|...++.+.+..|+++.++..++.+|...|++++|...+++..+..
T Consensus 96 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 96 MTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 777777777777777777777777888888888888888887776654
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.51 E-value=1.1e-06 Score=82.30 Aligned_cols=144 Identities=10% Similarity=-0.074 Sum_probs=104.7
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHH
Q 046312 295 NVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMA 374 (514)
Q Consensus 295 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li 374 (514)
+...|..+...+.+.|++++|...|++.++.. |+...+ . .+.+..+ . ......|..+.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~----------~-~~~~~~~----~-----~~~~~~~~nla 203 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSF----------S-NEEAQKA----Q-----ALRLASHLNLA 203 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCC----------C-SHHHHHH----H-----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccC----------C-hHHHHHH----H-----HHHHHHHHHHH
Confidence 34566666777777777777777777776632 221100 0 0111000 0 01145677888
Q ss_pred HHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCH
Q 046312 375 DILARAGHLKEAYTFIMNMP--FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMW 452 (514)
Q Consensus 375 ~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 452 (514)
.+|.+.|++++|+..++++. .+.+...|..+..++...|+ +++|...++++.+++|++..++..++.++.+.|++
T Consensus 204 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~---~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~ 280 (336)
T 1p5q_A 204 MCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVND---FELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQ 280 (336)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Confidence 88999999999999998885 34467888899999999999 99999999999999999999999999999999999
Q ss_pred HHH-HHHHHHHH
Q 046312 453 EKV-SNVRRFMK 463 (514)
Q Consensus 453 ~~A-~~~~~~m~ 463 (514)
++| ...++.|.
T Consensus 281 ~~a~~~~~~~~~ 292 (336)
T 1p5q_A 281 LAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 998 44566653
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.50 E-value=1.2e-06 Score=69.10 Aligned_cols=114 Identities=9% Similarity=-0.085 Sum_probs=63.8
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHH
Q 046312 332 VTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP--FQPNPIVLRALLSAS 409 (514)
Q Consensus 332 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~ 409 (514)
..+..+...+...|++++|...+++..+. .+.+...+..+...+...|++++|.+.++++. .+.+...+..+...+
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 34444455555555555555555555432 11234445555555555556666655555543 222455556666666
Q ss_pred HhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC
Q 046312 410 SIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVG 450 (514)
Q Consensus 410 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 450 (514)
...|+ +++|.+.++.+.+..|.+...+..++.++.+.|
T Consensus 95 ~~~~~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 95 EAMKD---YTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHTTC---HHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHHhh---HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 66666 666666666666666666666666666666554
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.49 E-value=4.6e-07 Score=82.44 Aligned_cols=186 Identities=9% Similarity=-0.074 Sum_probs=106.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCc--C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 046312 266 QLGTALIDMYAKCGAVGCARLLFSRMEE--I-NVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACN 342 (514)
Q Consensus 266 ~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 342 (514)
..+..+...+.+.|++++|+..|++..+ | +...|..+..+|.+.|++++|...+++..+.. +-+...+..+..++.
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 3445555566666666666666665543 2 45666666677777777777777777766532 223555666667777
Q ss_pred ccCcHHHHHHHHHHHHHhhCCCCch-HHHHHHHH---HHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCcc
Q 046312 343 HAGMVEDGYRYFHEMEHVHGIKPMR-IHYHTMAD---ILARAGHLKEAYTFIMNMPFQPNPIVLRALLSASSIHDAKYQD 418 (514)
Q Consensus 343 ~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~---~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~ 418 (514)
..|++++|...|++..+. .|+. ..+...+. ...+...+.. ........+......+. .+ ..|+ .
T Consensus 84 ~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~i~~~l~-~l-~~~~---~ 151 (281)
T 2c2l_A 84 EMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS----IEERRIHQESELHSYLT-RL-IAAE---R 151 (281)
T ss_dssp HTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH----HHHTCCCCCCHHHHHHH-HH-HHHH---H
T ss_pred HcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH----HHHHHHhhhHHHHHHHH-HH-HHHH---H
Confidence 777777777777776653 2221 00111111 1122222222 11222233333333332 22 2466 7
Q ss_pred hHHHHHHHHHHhcCCCCCchHHHHHHHHHhc-CCHHHHHHHHHHHHh
Q 046312 419 GVGNEVRRRLLELEPRGSQNLVIVANKYAEV-GMWEKVSNVRRFMKN 464 (514)
Q Consensus 419 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~ 464 (514)
+.|.+.++.+.+.+|++......+...+.+. +.+++|.++|++..+
T Consensus 152 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 152 ERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 7777777778888887665555666666666 678889999988764
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.49 E-value=1.4e-06 Score=68.32 Aligned_cols=116 Identities=9% Similarity=-0.040 Sum_probs=70.5
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHH
Q 046312 332 VTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP--FQPNPIVLRALLSAS 409 (514)
Q Consensus 332 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~ 409 (514)
..+..+...+...|+++.|...+++..... +.+...+..+...+...|++++|.+.+++.. .+.+...+..+...+
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELN--PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 344445555556666666666666665431 2234555556666666666666666666553 223455666666666
Q ss_pred HhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCH
Q 046312 410 SIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMW 452 (514)
Q Consensus 410 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 452 (514)
...|+ ++.|...++.+.+..|+++..+..++.++.+.|++
T Consensus 91 ~~~~~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 91 SSLNK---HVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHTTC---HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHhCC---HHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 77777 77777777777777776666666677766666653
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.46 E-value=4.8e-06 Score=68.57 Aligned_cols=122 Identities=11% Similarity=-0.011 Sum_probs=60.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCc---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 046312 268 GTALIDMYAKCGAVGCARLLFSRMEE---INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHA 344 (514)
Q Consensus 268 ~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 344 (514)
+..+...+...|++++|...|++..+ .+...+..+...+...|++++|...+++..+.. +.+...+..+..++...
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~ 94 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMAL 94 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHh
Confidence 33444445555555555555554432 234455555555555666666666665555532 22344555555555566
Q ss_pred CcHHHHHHHHHHHHHhhCCCCchHHH--HHHHHHHHhcCCHHHHHHHHHh
Q 046312 345 GMVEDGYRYFHEMEHVHGIKPMRIHY--HTMADILARAGHLKEAYTFIMN 392 (514)
Q Consensus 345 ~~~~~a~~~~~~~~~~~~~~p~~~~~--~~li~~~~~~g~~~~A~~~~~~ 392 (514)
|++++|...++++.+... .+...+ ...+..+.+.|++++|.+.+.+
T Consensus 95 ~~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 142 (166)
T 1a17_A 95 GKFRAALRDYETVVKVKP--HDKDAKMKYQECNKIVKQKAFERAIAGDEH 142 (166)
T ss_dssp TCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 666666666666554311 112222 2223334455556665555544
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.46 E-value=2.1e-06 Score=68.97 Aligned_cols=100 Identities=6% Similarity=-0.115 Sum_probs=81.1
Q ss_pred CCc-hHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHH
Q 046312 364 KPM-RIHYHTMADILARAGHLKEAYTFIMNMP--FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLV 440 (514)
Q Consensus 364 ~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 440 (514)
.|+ ...+..+...+.+.|++++|...|+++. .+.+...|..+...+...|+ ++.|...++.+.+++|+++.++.
T Consensus 14 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~ 90 (142)
T 2xcb_A 14 SEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGL---YEQALQSYSYGALMDINEPRFPF 90 (142)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTTCTHHHH
T ss_pred CHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhh---HHHHHHHHHHHHhcCCCCcHHHH
Confidence 443 4455667777888889999988888875 33467778888888888888 99999999999999999888888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCC
Q 046312 441 IVANKYAEVGMWEKVSNVRRFMKNVG 466 (514)
Q Consensus 441 ~l~~~~~~~g~~~~A~~~~~~m~~~~ 466 (514)
.++.+|...|++++|.+.+++..+..
T Consensus 91 ~lg~~~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 91 HAAECHLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999999998887543
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.44 E-value=3.2e-06 Score=72.39 Aligned_cols=97 Identities=11% Similarity=0.059 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCc----
Q 046312 297 WTWSAMILGLAQHGYAEEALELFSNMKNS----SISP--NYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPM---- 366 (514)
Q Consensus 297 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~---- 366 (514)
.++..+...+...|++++|...+++..+. +-.| ....+..+...+...|++++|...+++..+...-..+
T Consensus 67 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 146 (203)
T 3gw4_A 67 RALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAI 146 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHH
Confidence 34455555566666666666666555442 1011 1233455555666666666666666665532111111
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 046312 367 RIHYHTMADILARAGHLKEAYTFIMNM 393 (514)
Q Consensus 367 ~~~~~~li~~~~~~g~~~~A~~~~~~~ 393 (514)
..++..+...+...|++++|.+.+++.
T Consensus 147 ~~~~~~la~~~~~~g~~~~A~~~~~~a 173 (203)
T 3gw4_A 147 ACAFRGLGDLAQQEKNLLEAQQHWLRA 173 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 223455566666667777666666554
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.43 E-value=2.2e-06 Score=67.15 Aligned_cols=97 Identities=7% Similarity=-0.101 Sum_probs=73.3
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHH
Q 046312 367 RIHYHTMADILARAGHLKEAYTFIMNMP--FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVAN 444 (514)
Q Consensus 367 ~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 444 (514)
...+..+...+.+.|++++|...|++.. .+.+...|..+..++...|+ +++|...++.+.+++|+++.++..++.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMS---FPEAIADCNKAIEKDPNFVRAYIRKAT 80 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcC---HHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 3455666677777888888888877764 33356777777778888888 888888888888888888778888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCC
Q 046312 445 KYAEVGMWEKVSNVRRFMKNVG 466 (514)
Q Consensus 445 ~~~~~g~~~~A~~~~~~m~~~~ 466 (514)
+|...|++++|...+++..+..
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHhC
Confidence 8888888888888888776543
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.38 E-value=9.4e-06 Score=72.31 Aligned_cols=121 Identities=8% Similarity=-0.074 Sum_probs=48.8
Q ss_pred HHHHHhcCCHHHHHHHHHhcCc--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCcH
Q 046312 272 IDMYAKCGAVGCARLLFSRMEE--INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPN--YVTFLGVLCACNHAGMV 347 (514)
Q Consensus 272 i~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~~~~ 347 (514)
...+...|++++|.++|+.+.. |+......+...+.+.+++++|+..|+...... .|. ...+..+..++...|++
T Consensus 109 A~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~LG~~ 187 (282)
T 4f3v_A 109 AACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAANLALF 187 (282)
T ss_dssp HHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHHCCCH
Confidence 3344444444444444444432 211122233334444455555555554332210 010 11333344444455555
Q ss_pred HHHHHHHHHHHHhhCCCCc--hHHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 046312 348 EDGYRYFHEMEHVHGIKPM--RIHYHTMADILARAGHLKEAYTFIMNMP 394 (514)
Q Consensus 348 ~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~ 394 (514)
++|+..|++.... ...|. .........++.+.|+.++|..+|+++.
T Consensus 188 ~eAl~~l~~a~~g-~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~ 235 (282)
T 4f3v_A 188 TEAERRLTEANDS-PAGEACARAIAWYLAMARRSQGNESAAVALLEWLQ 235 (282)
T ss_dssp HHHHHHHHHHHTS-TTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-CCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5555555544421 11122 2223333444445555555555555443
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.37 E-value=5.4e-06 Score=73.86 Aligned_cols=124 Identities=7% Similarity=-0.078 Sum_probs=68.0
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhc
Q 046312 337 VLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMPFQPNP----IVLRALLSASSIH 412 (514)
Q Consensus 337 ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~----~~~~~l~~~~~~~ 412 (514)
+...+...|++++|.++|+.+... .|+......+...+.+.|++++|+..|+.....|+. ..+..+..++...
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~~~---~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~L 184 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAPVA---GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANL 184 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSCCT---TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHC
Confidence 344455566666666666665532 343334444444556666666666666654422221 2445555666666
Q ss_pred CCCCcchHHHHHHHHHHhcC--CC-CCchHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 046312 413 DAKYQDGVGNEVRRRLLELE--PR-GSQNLVIVANKYAEVGMWEKVSNVRRFMKNVG 466 (514)
Q Consensus 413 ~~~~~~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 466 (514)
|+ .++|...++++..-. |. .+......+.++.+.|+.++|...|+++....
T Consensus 185 G~---~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 185 AL---FTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp TC---HHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred CC---HHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 66 666666666665322 22 22345566666666666666666666665543
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.36 E-value=2.1e-06 Score=78.08 Aligned_cols=47 Identities=11% Similarity=-0.071 Sum_probs=19.7
Q ss_pred cCcHHHHHHHHHHHHHhhCCCCch-HHHHHHHHHHHhc-CCHHHHHHHHHhC
Q 046312 344 AGMVEDGYRYFHEMEHVHGIKPMR-IHYHTMADILARA-GHLKEAYTFIMNM 393 (514)
Q Consensus 344 ~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~-g~~~~A~~~~~~~ 393 (514)
.|+.++|.+.++...+ ..|+. .....+...+.+. +.+++|.++|.++
T Consensus 148 ~~~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a 196 (281)
T 2c2l_A 148 AAERERELEECQRNHE---GHEDDGHIRAQQACIEAKHDKYMADMDELFSQV 196 (281)
T ss_dssp HHHHHHHHTTTSGGGT---TTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhhhc---cccchhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3555555555554442 23332 2222222223332 4455555555544
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.35 E-value=2.6e-06 Score=64.71 Aligned_cols=98 Identities=8% Similarity=-0.093 Sum_probs=70.4
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCC--CCchHHHH
Q 046312 367 RIHYHTMADILARAGHLKEAYTFIMNMP--FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPR--GSQNLVIV 442 (514)
Q Consensus 367 ~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l 442 (514)
...+..+...+.+.|++++|...++++. .+.+...+..+...+...|+ +++|...++++.+..|. +...+..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~---~~~A~~~~~~a~~~~~~~~~~~~~~~l 82 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLER---YEEAVDCYNYVINVIEDEYNKDVWAAK 82 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTSCCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccC---HHHHHHHHHHHHHhCcccchHHHHHHH
Confidence 3445556666677777777777776664 33356667777777777777 77888888888787777 77777788
Q ss_pred HHHHHhc-CCHHHHHHHHHHHHhCCC
Q 046312 443 ANKYAEV-GMWEKVSNVRRFMKNVGL 467 (514)
Q Consensus 443 ~~~~~~~-g~~~~A~~~~~~m~~~~~ 467 (514)
+.+|.+. |++++|.+.+++......
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhccc
Confidence 8888888 888888888887776543
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.34 E-value=5.7e-06 Score=65.70 Aligned_cols=98 Identities=10% Similarity=-0.020 Sum_probs=73.0
Q ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHH
Q 046312 365 PMRIHYHTMADILARAGHLKEAYTFIMNMP--FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIV 442 (514)
Q Consensus 365 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 442 (514)
.+...+..+...+...|++++|...|++.. .+.+...+..+...+...|+ ++.|...++.+.+++|+++.++..+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~l 83 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQ---PEQALADCRRALELDGQSVKAHFFL 83 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHhCchhHHHHHHH
Confidence 345566677777777777777777777764 33356677777777777888 8888888888888888877778888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC
Q 046312 443 ANKYAEVGMWEKVSNVRRFMKNV 465 (514)
Q Consensus 443 ~~~~~~~g~~~~A~~~~~~m~~~ 465 (514)
+.+|...|++++|...+++..+.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHH
Confidence 88888888888888888877653
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.34 E-value=2.4e-06 Score=69.22 Aligned_cols=93 Identities=8% Similarity=-0.153 Sum_probs=49.7
Q ss_pred hHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCHHHHHHHhhcc---CCCChhhHHHHHHHHHh
Q 046312 131 TYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKRDACKVFDDM---CERSVVSWNVIITVCVE 207 (514)
Q Consensus 131 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~li~~~~~ 207 (514)
.+..+...+.+.|++++|...|+++.+.. +.+...|..+..+|...|++++|...|++. .+.+...|..+..+|.+
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~ 116 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLR 116 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH
Confidence 34444455555555555555555555553 234445555555555555555555555554 22234455555555555
Q ss_pred CCChhHHHHHHHHHHHC
Q 046312 208 NLWLGEAVGYFVKMKDL 224 (514)
Q Consensus 208 ~~~~~~a~~~~~~m~~~ 224 (514)
.|++++|...|++..+.
T Consensus 117 lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 117 LKAPLKAKECFELVIQH 133 (151)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 55555555555555553
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.33 E-value=4.1e-06 Score=69.14 Aligned_cols=108 Identities=12% Similarity=-0.003 Sum_probs=89.5
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCC-chHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHH
Q 046312 330 NYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKP-MRIHYHTMADILARAGHLKEAYTFIMNMP-FQP-NPIVLRALL 406 (514)
Q Consensus 330 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~ 406 (514)
+...+..+...+...|++++|...|++..+. .| +...|..+..+|.+.|++++|+..|++.. ..| +...|..+.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 86 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSI---APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 3556777888889999999999999999875 34 57788888999999999999999998885 334 578888899
Q ss_pred HHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHH
Q 046312 407 SASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVA 443 (514)
Q Consensus 407 ~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 443 (514)
..+...|+ ++.|...++++.++.|++...+....
T Consensus 87 ~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 87 LARFDMAD---YKGAKEAYEKGIEAEGNGGSDAMKRG 120 (164)
T ss_dssp HHHHHTTC---HHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHHHHccC---HHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 99999999 99999999999999999887655433
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.33 E-value=2.3e-06 Score=66.52 Aligned_cols=94 Identities=13% Similarity=-0.012 Sum_probs=80.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 046312 370 YHTMADILARAGHLKEAYTFIMNMP-FQP-NPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYA 447 (514)
Q Consensus 370 ~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 447 (514)
+..+...+.+.|++++|...|+++. ..| +...|..+...+...|+ .++|...++++.+++|+++.++..++.+|.
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~---~~~A~~~~~~al~l~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEK---DGLAIIALNHARMLDPKDIAVHAALAVSHT 96 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 4456677888999999999998886 334 67888888889999999 999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHhCC
Q 046312 448 EVGMWEKVSNVRRFMKNVG 466 (514)
Q Consensus 448 ~~g~~~~A~~~~~~m~~~~ 466 (514)
..|++++|...+++..+..
T Consensus 97 ~~g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHHHC--
T ss_pred HcCCHHHHHHHHHHHHHhC
Confidence 9999999999999987644
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.32 E-value=1.9e-05 Score=61.08 Aligned_cols=93 Identities=17% Similarity=0.199 Sum_probs=43.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCc---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 046312 266 QLGTALIDMYAKCGAVGCARLLFSRMEE---INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACN 342 (514)
Q Consensus 266 ~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 342 (514)
..+..+...+...|++++|.+.|+++.+ .+...+..+...+...|++++|..+++++.+.. +.+..++..+..++.
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHH
Confidence 3444444555555555555555554432 233444444445555555555555555544431 223334444444444
Q ss_pred ccCcHHHHHHHHHHHHH
Q 046312 343 HAGMVEDGYRYFHEMEH 359 (514)
Q Consensus 343 ~~~~~~~a~~~~~~~~~ 359 (514)
..|++++|...++++.+
T Consensus 89 ~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHH
Confidence 45555555555554443
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=0.00051 Score=63.28 Aligned_cols=176 Identities=8% Similarity=0.019 Sum_probs=115.7
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHcCCCCCcc-hHHHHHHHHhccC-CchHHHHHHHHHHHhCCCCCcchHHHHHHHHHc
Q 046312 99 NLIRGYAWSDRPREAVWVFIDMKRRGIKPTEF-TYPFVLKACAEIS-GLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGS 176 (514)
Q Consensus 99 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 176 (514)
.+-....+.+..++|+++++++... .|+.. .|+.--.++...| .+++++++++.+.... +-+..+|+.-..++.+
T Consensus 59 ~~r~~~~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~ 135 (349)
T 3q7a_A 59 YFRAIAAKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDR 135 (349)
T ss_dssp HHHHHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHH
Confidence 3333344455667899999999885 45544 5777666777777 5899999999998775 4466777777777666
Q ss_pred C-C-CHHHHHHHhhccCCC---ChhhHHHHHHHHHhCCChh--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 046312 177 C-R-RKRDACKVFDDMCER---SVVSWNVIITVCVENLWLG--------EAVGYFVKMKDLGFEPDETTMLVVLSACTEL 243 (514)
Q Consensus 177 ~-~-~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~--------~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~ 243 (514)
. + +++++..+++++.+. |-.+|+.-.-.+.+.|.++ ++++.++++.+.. .-|...|+.....+.+.
T Consensus 136 l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l 214 (349)
T 3q7a_A 136 ISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSR 214 (349)
T ss_dssp HCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTS
T ss_pred hcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 5 6 788888888888554 4455555444444444555 7888888888765 44677777776666666
Q ss_pred CC-------hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 046312 244 GN-------LSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCG 279 (514)
Q Consensus 244 g~-------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 279 (514)
++ ++++.+.++..+...+. |...++-+-..+.+.|
T Consensus 215 ~~~~~~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~ 256 (349)
T 3q7a_A 215 PGAETSSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFS 256 (349)
T ss_dssp TTCCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT
T ss_pred cccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcC
Confidence 65 45666666666665532 4555554444444444
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.30 E-value=1.2e-05 Score=61.58 Aligned_cols=96 Identities=13% Similarity=0.047 Sum_probs=38.7
Q ss_pred HHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCC
Q 046312 338 LCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP--FQPNPIVLRALLSASSIHDAK 415 (514)
Q Consensus 338 l~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~ 415 (514)
...+...|++++|...+++..... +.+...+..+...+.+.|++++|...+++.. .+.+...+..+...+...|+
T Consensus 11 ~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~- 87 (118)
T 1elw_A 11 GNKALSVGNIDDALQCYSEAIKLD--PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNR- 87 (118)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhh-
Confidence 333334444444444444443320 1123333334444444444444444444332 11223344444444444444
Q ss_pred CcchHHHHHHHHHHhcCCCCCch
Q 046312 416 YQDGVGNEVRRRLLELEPRGSQN 438 (514)
Q Consensus 416 ~~~~~a~~~~~~~~~~~p~~~~~ 438 (514)
++.|.+.++.+.+..|+++..
T Consensus 88 --~~~A~~~~~~~~~~~~~~~~~ 108 (118)
T 1elw_A 88 --FEEAKRTYEEGLKHEANNPQL 108 (118)
T ss_dssp --HHHHHHHHHHHHTTCTTCHHH
T ss_pred --HHHHHHHHHHHHHcCCCCHHH
Confidence 444444444444444444333
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.30 E-value=5.5e-06 Score=70.78 Aligned_cols=169 Identities=9% Similarity=-0.063 Sum_probs=99.5
Q ss_pred HHHhcCCHHHHHHHHHhcCc---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHH
Q 046312 274 MYAKCGAVGCARLLFSRMEE---INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDG 350 (514)
Q Consensus 274 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 350 (514)
.....|+++++.+.|+...+ .....+..+...+...|++++|...|++..+.. |+...+...
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~------------- 77 (198)
T 2fbn_A 13 GRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF--IHTEEWDDQ------------- 77 (198)
T ss_dssp ---------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTCTTCCCH-------------
T ss_pred hhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--hcccccchh-------------
Confidence 33444555555555544332 234456666677777777777777777777632 221100000
Q ss_pred HHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 046312 351 YRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP--FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRL 428 (514)
Q Consensus 351 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~ 428 (514)
....-.. ......+..+..+|.+.|++++|...++++. .+.+...+..+..++...|+ ++.|...++.+
T Consensus 78 --~~~~~~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~---~~~A~~~~~~a 148 (198)
T 2fbn_A 78 --ILLDKKK----NIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGF---LEEAKENLYKA 148 (198)
T ss_dssp --HHHHHHH----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTC---HHHHHHHHHHH
T ss_pred --hHHHHHH----HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccc---HHHHHHHHHHH
Confidence 0000000 0013566777788888888888888888775 33467788888888999999 99999999999
Q ss_pred HhcCCCCCchHHHHHHHHHhcCCHHHHH-HHHHHHHhCC
Q 046312 429 LELEPRGSQNLVIVANKYAEVGMWEKVS-NVRRFMKNVG 466 (514)
Q Consensus 429 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~-~~~~~m~~~~ 466 (514)
.++.|++..++..+..++...|+.+++. ..++.|-..+
T Consensus 149 l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 149 ASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp HHHSTTCHHHHHHHHHHHHHHHHHHC-------------
T ss_pred HHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999998888888998888888887777 5566554443
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.30 E-value=8.6e-06 Score=62.37 Aligned_cols=98 Identities=9% Similarity=-0.005 Sum_probs=87.8
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHH
Q 046312 366 MRIHYHTMADILARAGHLKEAYTFIMNMP--FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVA 443 (514)
Q Consensus 366 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 443 (514)
+...+..+...+...|++++|...+++.. .+.+...+..+...+...|+ ++.|...++.+.+..|+++..+..++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~~a 79 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGD---YQKAYEDGCKTVDLKPDWGKGYSRKA 79 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhcc---HHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 34567778888999999999999999985 34478888889999999999 99999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCC
Q 046312 444 NKYAEVGMWEKVSNVRRFMKNVG 466 (514)
Q Consensus 444 ~~~~~~g~~~~A~~~~~~m~~~~ 466 (514)
.+|...|++++|.+.+++..+.+
T Consensus 80 ~~~~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 80 AALEFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhHHHHHHHHHHHHHcC
Confidence 99999999999999999988754
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.28 E-value=1.1e-05 Score=67.43 Aligned_cols=124 Identities=10% Similarity=0.077 Sum_probs=81.3
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHH-HHhcCCH--H
Q 046312 308 QHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADI-LARAGHL--K 384 (514)
Q Consensus 308 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~-~~~~g~~--~ 384 (514)
..|++++|...+++..+.. +.+...+..+..+|...|++++|...+++..+.. +.+...+..+..+ +...|++ +
T Consensus 22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcchH
Confidence 4566677777777766542 2345666677777777777777777777777642 2245566666666 6677777 7
Q ss_pred HHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCc
Q 046312 385 EAYTFIMNMP-FQP-NPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQ 437 (514)
Q Consensus 385 ~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 437 (514)
+|...++++. ..| +...+..+...+...|+ ++.|...++.+.+..|++..
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~ 150 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQAN---YAQAIELWQKVMDLNSPRIN 150 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTCCTTSC
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccc---HHHHHHHHHHHHhhCCCCcc
Confidence 7777777764 233 46667777777777888 88888888888888777654
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=3.5e-06 Score=68.20 Aligned_cols=101 Identities=9% Similarity=-0.051 Sum_probs=67.3
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCC-chHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHH
Q 046312 332 VTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKP-MRIHYHTMADILARAGHLKEAYTFIMNMP-FQP-NPIVLRALLSA 408 (514)
Q Consensus 332 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~ 408 (514)
..+..+...+...|++++|...|+.+... .| +...|..+..+|.+.|++++|...|+++. ..| +...+..+..+
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~ 98 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVL---DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHc---CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 34555556666777777777777777653 33 45566667777777777777777777664 223 45666667777
Q ss_pred HHhcCCCCcchHHHHHHHHHHhcCCCCCch
Q 046312 409 SSIHDAKYQDGVGNEVRRRLLELEPRGSQN 438 (514)
Q Consensus 409 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 438 (514)
+...|+ +++|...++.+.++.|+++..
T Consensus 99 ~~~~g~---~~~A~~~~~~al~~~p~~~~~ 125 (148)
T 2vgx_A 99 LLQXGE---LAEAESGLFLAQELIANXPEF 125 (148)
T ss_dssp HHHTTC---HHHHHHHHHHHHHHHTTCGGG
T ss_pred HHHcCC---HHHHHHHHHHHHHHCcCCCcc
Confidence 777777 777777777777777766543
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.26 E-value=8.2e-06 Score=64.16 Aligned_cols=100 Identities=9% Similarity=0.034 Sum_probs=89.2
Q ss_pred CCchHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHH
Q 046312 364 KPMRIHYHTMADILARAGHLKEAYTFIMNMP-FQP-NPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVI 441 (514)
Q Consensus 364 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 441 (514)
+.+...+..+...+.+.|++++|.+.|++.. ..| +...+..+...+...|+ +++|...++.+.+..|+++.++..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~---~~~A~~~~~~a~~~~~~~~~~~~~ 89 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLE---FQLALKDCEECIQLEPTFIKGYTR 89 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTC---HHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHhCCCchHHHHH
Confidence 3456678888999999999999999999875 344 67888999999999999 999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCC
Q 046312 442 VANKYAEVGMWEKVSNVRRFMKNVG 466 (514)
Q Consensus 442 l~~~~~~~g~~~~A~~~~~~m~~~~ 466 (514)
++.+|.+.|++++|.+.+++.....
T Consensus 90 la~~~~~~~~~~~A~~~~~~~~~~~ 114 (133)
T 2lni_A 90 KAAALEAMKDYTKAMDVYQKALDLD 114 (133)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 9999999999999999999987653
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.25 E-value=2.2e-05 Score=62.98 Aligned_cols=108 Identities=10% Similarity=-0.085 Sum_probs=53.3
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCc----hHHHHHHHHHHHhcCCHHHHHHHHHhCC-C-CCCHHHHHHH
Q 046312 332 VTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPM----RIHYHTMADILARAGHLKEAYTFIMNMP-F-QPNPIVLRAL 405 (514)
Q Consensus 332 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~l 405 (514)
..+..+...+...|++++|...|++..+ ..|+ ...+..+...|...|++++|...+++.. . +.+...+..+
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 105 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR 105 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence 3344444444455555555555555442 2333 3444445555555555555555555443 1 2234445555
Q ss_pred HHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHH
Q 046312 406 LSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANK 445 (514)
Q Consensus 406 ~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 445 (514)
...+...|+ ++.|...++.+.++.|++...+..+..+
T Consensus 106 a~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (148)
T 2dba_A 106 SQALEKLGR---LDQAVLDLQRCVSLEPKNKVFQEALRNI 142 (148)
T ss_dssp HHHHHHHTC---HHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHcCC---HHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 555555555 5556666665555555554444444333
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.24 E-value=3e-05 Score=60.49 Aligned_cols=113 Identities=14% Similarity=0.052 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHH
Q 046312 298 TWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADIL 377 (514)
Q Consensus 298 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 377 (514)
.+..+...+...|++++|...+++..... +.+...+..+..++...|++++|...+++..+. .+.+...+..+...+
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICI--DPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc--CccCHHHHHHHHHHH
Confidence 33444444444555555555555544421 123344444444455555555555555554442 111233444444555
Q ss_pred HhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcC
Q 046312 378 ARAGHLKEAYTFIMNMP-FQP-NPIVLRALLSASSIHD 413 (514)
Q Consensus 378 ~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~ 413 (514)
.+.|++++|...|++.. ..| +...+..+...+...|
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLR 128 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHh
Confidence 55555555555554443 112 3344444444444433
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=0.00088 Score=61.72 Aligned_cols=172 Identities=10% Similarity=-0.005 Sum_probs=107.7
Q ss_pred HHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC-ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc-C-CH
Q 046312 205 CVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELG-NLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKC-G-AV 281 (514)
Q Consensus 205 ~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g-~~ 281 (514)
..+.+..++|+++++++...+ +-+...++.--..+...| .++++..+++.++....+ +..+++.-..++.+. + ++
T Consensus 64 ~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~ 141 (349)
T 3q7a_A 64 AAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDP 141 (349)
T ss_dssp HHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCC
T ss_pred HHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCCh
Confidence 344455567888888888763 234455555555555566 488888888888876643 566666665556555 5 77
Q ss_pred HHHHHHHHhcCc---CCHHHHHHHHHHHHHcCChH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCc----
Q 046312 282 GCARLLFSRMEE---INVWTWSAMILGLAQHGYAE--------EALELFSNMKNSSISPNYVTFLGVLCACNHAGM---- 346 (514)
Q Consensus 282 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~--------~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~---- 346 (514)
++++++++++.+ .|..+|+.-.-.+.+.|.++ ++++.++++++.. .-|...|+.....+.+.+.
T Consensus 142 ~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~ 220 (349)
T 3q7a_A 142 VSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETS 220 (349)
T ss_dssp HHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccc
Confidence 888888888776 35566655444444444444 7777777777753 3455666666666666554
Q ss_pred ---HHHHHHHHHHHHHhhCCCC-chHHHHHHHHHHHhcCC
Q 046312 347 ---VEDGYRYFHEMEHVHGIKP-MRIHYHTMADILARAGH 382 (514)
Q Consensus 347 ---~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~ 382 (514)
+++++++++++... .| |...|+.+-..+.+.|+
T Consensus 221 ~~~~~eELe~~~~aI~~---~P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 221 SRSLQDELIYILKSIHL---IPHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhcCC
Confidence 56777777777653 34 35556655555555554
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.22 E-value=7e-06 Score=64.40 Aligned_cols=93 Identities=5% Similarity=-0.041 Sum_probs=66.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCc-------hH
Q 046312 369 HYHTMADILARAGHLKEAYTFIMNMP-FQP-NPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQ-------NL 439 (514)
Q Consensus 369 ~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~-------~~ 439 (514)
.+..+...+.+.|++++|++.|+++. ..| +...|..+..+|...|+ +++|.+.+++++++.|+... +|
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~---~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKK---FAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhh---HHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 45566777777777777777777764 333 46667777777777777 77777777777777765543 45
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHh
Q 046312 440 VIVANKYAEVGMWEKVSNVRRFMKN 464 (514)
Q Consensus 440 ~~l~~~~~~~g~~~~A~~~~~~m~~ 464 (514)
..++.+|...|++++|.+.|++...
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5677777888888888888887654
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.21 E-value=1.9e-05 Score=65.08 Aligned_cols=96 Identities=10% Similarity=-0.021 Sum_probs=79.8
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCc-hHHHHHH
Q 046312 295 NVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPM-RIHYHTM 373 (514)
Q Consensus 295 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l 373 (514)
+...|..+...+.+.|++++|+..|++.++.. +-+...|..+..+|...|++++|...+++..+. .|+ ...|..+
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l 85 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVV---DPKYSKAWSRL 85 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCCHHHHHHH
Confidence 45677888888999999999999999988753 335677888888899999999999999998875 444 7778888
Q ss_pred HHHHHhcCCHHHHHHHHHhCC
Q 046312 374 ADILARAGHLKEAYTFIMNMP 394 (514)
Q Consensus 374 i~~~~~~g~~~~A~~~~~~~~ 394 (514)
..+|.+.|++++|.+.|++..
T Consensus 86 g~~~~~~g~~~~A~~~~~~al 106 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKGI 106 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHH
Confidence 899999999999999998874
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.20 E-value=1.5e-05 Score=62.28 Aligned_cols=92 Identities=8% Similarity=-0.057 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCc-hHHHHHHHHH
Q 046312 298 TWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPM-RIHYHTMADI 376 (514)
Q Consensus 298 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~ 376 (514)
.|..+...+.+.|++++|+..|++.++.. +.+...+..+..++...|++++|...+++..+. .|+ ...|..+..+
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~ 81 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEK---DPNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCcHHHHHHHHHH
Confidence 34444445555555555555555554431 223344444445555555555555555555442 222 3344444444
Q ss_pred HHhcCCHHHHHHHHHhC
Q 046312 377 LARAGHLKEAYTFIMNM 393 (514)
Q Consensus 377 ~~~~g~~~~A~~~~~~~ 393 (514)
+...|++++|.+.|++.
T Consensus 82 ~~~~~~~~~A~~~~~~a 98 (126)
T 3upv_A 82 QIAVKEYASALETLDAA 98 (126)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHH
Confidence 44555555555444444
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.20 E-value=4.2e-05 Score=74.14 Aligned_cols=153 Identities=10% Similarity=-0.062 Sum_probs=78.3
Q ss_pred HHHHHcCCCHHHHHHHhhccCC--C---C---------------hhhHHHHHHHHHhCCChhHHHHHHHHHHHC-CCCCC
Q 046312 171 VRFYGSCRRKRDACKVFDDMCE--R---S---------------VVSWNVIITVCVENLWLGEAVGYFVKMKDL-GFEPD 229 (514)
Q Consensus 171 i~~~~~~~~~~~A~~~~~~~~~--~---~---------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~ 229 (514)
...+.+.|++++|.+.|..+.+ + + ..++..+...|.+.|++++|.+.+.++... +..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 3445666777777777766611 1 0 013556666777777777777777665542 11112
Q ss_pred HH----HHHHHHHHHhccCChHHHHHHHHHHHHh----CCC-CchhHHHHHHHHHHhcCCHHHHHHHHHhcCc-------
Q 046312 230 ET----TMLVVLSACTELGNLSLGKWVHLQLIER----GTV-LNCQLGTALIDMYAKCGAVGCARLLFSRMEE------- 293 (514)
Q Consensus 230 ~~----t~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------- 293 (514)
.. ..+.+-..+...|+.+.+..+++..... +.. .-..++..+...|...|++++|..+++++..
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 11 1111222233455666666666655432 111 1133455555666666666666655554431
Q ss_pred -C-CHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 046312 294 -I-NVWTWSAMILGLAQHGYAEEALELFSNMK 323 (514)
Q Consensus 294 -~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 323 (514)
+ ...++..++..|...|++++|..++++..
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 202 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAAR 202 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 0 12345555555556666666666555544
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.19 E-value=1.1e-05 Score=64.66 Aligned_cols=99 Identities=8% Similarity=-0.061 Sum_probs=58.0
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHhhCCCC-chHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHH
Q 046312 334 FLGVLCACNHAGMVEDGYRYFHEMEHVHGIKP-MRIHYHTMADILARAGHLKEAYTFIMNMP--FQPNPIVLRALLSASS 410 (514)
Q Consensus 334 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~ 410 (514)
+..+...+...|++++|...|+.+... .| +...|..+..+|.+.|++++|...|+++. .+.+...+..+..++.
T Consensus 21 ~~~~a~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 21 LYALGFNQYQAGKWDDAQKIFQALCML---DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 334445555666666666666666543 23 34455556666666666666666666654 2224455555666666
Q ss_pred hcCCCCcchHHHHHHHHHHhcCCCCCch
Q 046312 411 IHDAKYQDGVGNEVRRRLLELEPRGSQN 438 (514)
Q Consensus 411 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 438 (514)
..|+ +++|...++.+.++.|+++..
T Consensus 98 ~~g~---~~~A~~~~~~al~~~p~~~~~ 122 (142)
T 2xcb_A 98 QLGD---LDGAESGFYSARALAAAQPAH 122 (142)
T ss_dssp HTTC---HHHHHHHHHHHHHHHHTCGGG
T ss_pred HcCC---HHHHHHHHHHHHHhCCCCcch
Confidence 6666 666666666666666665543
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.19 E-value=1.9e-05 Score=77.11 Aligned_cols=159 Identities=8% Similarity=-0.058 Sum_probs=107.7
Q ss_pred CHHHHHHHHHhcCc---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 046312 280 AVGCARLLFSRMEE---INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHE 356 (514)
Q Consensus 280 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 356 (514)
++++|...|+...+ .....|..+...+.+.|++++|...|++.++.. |+...+ . -+... +
T Consensus 249 ~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~----------~-~~~~~----~ 311 (457)
T 1kt0_A 249 SFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL--EMEYGL----------S-EKESK----A 311 (457)
T ss_dssp EEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTCCSC----------C-HHHHH----H
T ss_pred hcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccC----------C-hHHHH----H
Confidence 34444444443332 234566677777788888888888888777631 211100 0 00000 0
Q ss_pred HHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCC
Q 046312 357 MEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP--FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPR 434 (514)
Q Consensus 357 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~ 434 (514)
.. .-....|..+..+|.+.|++++|+..++++. .+.+...|..+..++...|+ ++.|...++++.+++|+
T Consensus 312 ~~-----~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~---~~~A~~~~~~al~l~P~ 383 (457)
T 1kt0_A 312 SE-----SFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNE---FESAKGDFEKVLEVNPQ 383 (457)
T ss_dssp HH-----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTTC--
T ss_pred HH-----HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccC---HHHHHHHHHHHHHhCCC
Confidence 00 1124567788889999999999999998885 34467888999999999999 99999999999999999
Q ss_pred CCchHHHHHHHHHhcCCHHHHHH-HHHHHH
Q 046312 435 GSQNLVIVANKYAEVGMWEKVSN-VRRFMK 463 (514)
Q Consensus 435 ~~~~~~~l~~~~~~~g~~~~A~~-~~~~m~ 463 (514)
+..++..++.++.+.|+++++.+ .++.|-
T Consensus 384 ~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 384 NKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988764 455554
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.18 E-value=3.4e-05 Score=71.94 Aligned_cols=134 Identities=13% Similarity=-0.125 Sum_probs=65.7
Q ss_pred hhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 046312 195 VVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDM 274 (514)
Q Consensus 195 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 274 (514)
...|..+...+.+.|++++|+..|++..+.. |+...+ ..+.+..+- .....++..+..+
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~-----------~~~~~~~~~--------~~~~~~~~nla~~ 205 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSF-----------SNEEAQKAQ--------ALRLASHLNLAMC 205 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCC-----------CSHHHHHHH--------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccC-----------ChHHHHHHH--------HHHHHHHHHHHHH
Confidence 4456666666777777777777777666542 211000 000000000 0012344445555
Q ss_pred HHhcCCHHHHHHHHHhcCc---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHH
Q 046312 275 YAKCGAVGCARLLFSRMEE---INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDG 350 (514)
Q Consensus 275 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 350 (514)
|.+.|++++|+..|++..+ .+...|..+..+|...|++++|...|++.++.. +-+...+..+..++...|+.+++
T Consensus 206 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 206 HLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555443 234555555555666666666666666655531 12334455555555555555555
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.18 E-value=1.6e-05 Score=63.81 Aligned_cols=98 Identities=7% Similarity=0.026 Sum_probs=88.7
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHH
Q 046312 366 MRIHYHTMADILARAGHLKEAYTFIMNMP-FQPN----PIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLV 440 (514)
Q Consensus 366 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 440 (514)
+...+..+...+.+.|++++|.+.|++.. ..|+ ...+..+...+...|+ +++|...++.+.+..|+++..+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLED---YDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHTSCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHcc---HHHHHHHHHHHHhhCccCHHHHH
Confidence 46678888899999999999999999875 6676 6788888899999999 99999999999999999988999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCC
Q 046312 441 IVANKYAEVGMWEKVSNVRRFMKNVG 466 (514)
Q Consensus 441 ~l~~~~~~~g~~~~A~~~~~~m~~~~ 466 (514)
.++.+|...|++++|...+++.....
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 99999999999999999999988654
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.17 E-value=6.1e-06 Score=70.51 Aligned_cols=161 Identities=14% Similarity=-0.051 Sum_probs=71.0
Q ss_pred HHHHHHcCCCHHHHHHHhhccCCC---ChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCh
Q 046312 170 LVRFYGSCRRKRDACKVFDDMCER---SVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNL 246 (514)
Q Consensus 170 li~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~ 246 (514)
.+......|+++++.+.++.-.+. ....+..+...+.+.|++++|+..|++..+.... +. .+... ..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~-~~~~~--------~~ 79 (198)
T 2fbn_A 10 HSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIH-TE-EWDDQ--------IL 79 (198)
T ss_dssp ------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTT-CT-TCCCH--------HH
T ss_pred hhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc-cc-ccchh--------hH
Confidence 334445566677766666544221 3445667777788888888888888888764211 11 00000 00
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCc---CCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 046312 247 SLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEE---INVWTWSAMILGLAQHGYAEEALELFSNMK 323 (514)
Q Consensus 247 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 323 (514)
..-. . .....++..+..+|.+.|++++|+..+++..+ .+...+..+..+|...|++++|...|++..
T Consensus 80 ~~~~---~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 149 (198)
T 2fbn_A 80 LDKK---K-------NIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAA 149 (198)
T ss_dssp HHHH---H-------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHH---H-------HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 0000 0 00123334444444445555555554444432 234455555555555556666665555555
Q ss_pred HCCCCCCHHHHHHHHHHHhccCcHHHHH
Q 046312 324 NSSISPNYVTFLGVLCACNHAGMVEDGY 351 (514)
Q Consensus 324 ~~g~~p~~~~~~~ll~~~~~~~~~~~a~ 351 (514)
+.. +-+...+..+..++...++.+++.
T Consensus 150 ~~~-p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 150 SLN-PNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp HHS-TTCHHHHHHHHHHHHHHHHHHC--
T ss_pred HHC-CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 431 122334444444444444444444
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.14 E-value=3.4e-05 Score=60.40 Aligned_cols=94 Identities=6% Similarity=-0.007 Sum_probs=44.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhC-CCCc----hHHHHHH
Q 046312 299 WSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHG-IKPM----RIHYHTM 373 (514)
Q Consensus 299 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~p~----~~~~~~l 373 (514)
+..+...+.+.|++++|+..|++.++.. +-+...|..+..+|...|++++|...+++..+... ..++ ..+|..+
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 4444555555555555555555555431 12234455555555555555555555555543210 0000 1234444
Q ss_pred HHHHHhcCCHHHHHHHHHhC
Q 046312 374 ADILARAGHLKEAYTFIMNM 393 (514)
Q Consensus 374 i~~~~~~g~~~~A~~~~~~~ 393 (514)
..++...|++++|++.|++.
T Consensus 90 g~~~~~~~~~~~A~~~~~ka 109 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRS 109 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 55555555555555555554
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.11 E-value=2.6e-05 Score=61.74 Aligned_cols=99 Identities=6% Similarity=-0.154 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHH
Q 046312 331 YVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP--FQPNPIVLRALLSA 408 (514)
Q Consensus 331 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~ 408 (514)
...+..+...+...|++++|...|+...... +.+...+..+..++...|++++|...+++.. .+.+...+..+...
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 3444455555555555555555555555431 1224445555555555555555555555543 22234555555555
Q ss_pred HHhcCCCCcchHHHHHHHHHHhcCCC
Q 046312 409 SSIHDAKYQDGVGNEVRRRLLELEPR 434 (514)
Q Consensus 409 ~~~~~~~~~~~~a~~~~~~~~~~~p~ 434 (514)
+...|+ ++.|...++.+.++.|+
T Consensus 87 ~~~~~~---~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 87 QLEMES---YDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHTTC---HHHHHHHHHHHHHHHHH
T ss_pred HHHHhh---HHHHHHHHHHHHHHChh
Confidence 556666 66666666666555554
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.08 E-value=5.5e-05 Score=57.10 Aligned_cols=63 Identities=11% Similarity=0.003 Sum_probs=28.6
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC--CHHHHHHHHHHHhcc-CChHHHHHHHHHHHHh
Q 046312 196 VSWNVIITVCVENLWLGEAVGYFVKMKDLGFEP--DETTMLVVLSACTEL-GNLSLGKWVHLQLIER 259 (514)
Q Consensus 196 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p--~~~t~~~ll~~~~~~-g~~~~a~~~~~~~~~~ 259 (514)
..|..+..++...|++++|...+++..+.. +. +...+..+..++... |++++|.+.++.+.+.
T Consensus 41 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 41 KYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence 334444444444455555555554444432 11 234444444444444 5555555544444443
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.05 E-value=0.00028 Score=68.18 Aligned_cols=193 Identities=11% Similarity=0.019 Sum_probs=133.2
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHhccCChHHHHHHHHHHHHhCCC-Cc
Q 046312 202 ITVCVENLWLGEAVGYFVKMKDLGFEPD----------------ETTMLVVLSACTELGNLSLGKWVHLQLIERGTV-LN 264 (514)
Q Consensus 202 i~~~~~~~~~~~a~~~~~~m~~~~~~p~----------------~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~ 264 (514)
...+.+.|++++|++.|.++.+...... ...+..+...|...|++++|...+..+.+.... ++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 4567788999999999999988642221 124677888899999999999988887654211 11
Q ss_pred h----hHHHHHHHHHHhcCCHHHHHHHHHhcCc---------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC--CC--
Q 046312 265 C----QLGTALIDMYAKCGAVGCARLLFSRMEE---------INVWTWSAMILGLAQHGYAEEALELFSNMKNS--SI-- 327 (514)
Q Consensus 265 ~----~~~~~li~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~-- 327 (514)
. .+.+.+...+...|+++.|..+++.... .-..++..+...|...|++++|..+++++... +.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 1 2334444555667888888888877653 12356777888888999999999988887652 21
Q ss_pred CCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHhhC-CC-C-c--hHHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 046312 328 SPN-YVTFLGVLCACNHAGMVEDGYRYFHEMEHVHG-IK-P-M--RIHYHTMADILARAGHLKEAYTFIMNMP 394 (514)
Q Consensus 328 ~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~-p-~--~~~~~~li~~~~~~g~~~~A~~~~~~~~ 394 (514)
.+. ..++..++..|...|++++|..++++...... +. | . ...+..+...+...|++++|...|.+..
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 222 34577778888889999999998888765311 11 1 1 2345666667778888888888877664
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.04 E-value=5.2e-05 Score=59.10 Aligned_cols=94 Identities=11% Similarity=0.039 Sum_probs=41.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCC-CCc----hHHHHHH
Q 046312 299 WSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGI-KPM----RIHYHTM 373 (514)
Q Consensus 299 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~p~----~~~~~~l 373 (514)
|..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...++++.....- .++ ...+..+
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 3344444444555555555555544431 223334444444444555555555555544432100 001 3334444
Q ss_pred HHHHHhcCCHHHHHHHHHhC
Q 046312 374 ADILARAGHLKEAYTFIMNM 393 (514)
Q Consensus 374 i~~~~~~g~~~~A~~~~~~~ 393 (514)
...+.+.|++++|.+.|+++
T Consensus 86 a~~~~~~~~~~~A~~~~~~~ 105 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKS 105 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHH
Confidence 44444555555555544444
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.04 E-value=2.1e-05 Score=61.55 Aligned_cols=61 Identities=11% Similarity=-0.010 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCC---CchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 046312 401 VLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRG---SQNLVIVANKYAEVGMWEKVSNVRRFMKN 464 (514)
Q Consensus 401 ~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 464 (514)
.+..+...+...|+ +++|...++.+.+..|++ +.++..++.+|.+.|++++|...++++..
T Consensus 41 ~~~~lg~~~~~~~~---~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 41 ALYWLGESYYATRN---FQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc---HHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33344444444444 455555555554444444 33344455555555555555555554443
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.03 E-value=2.2e-05 Score=61.37 Aligned_cols=96 Identities=6% Similarity=0.005 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCC-------Cch
Q 046312 368 IHYHTMADILARAGHLKEAYTFIMNMP--FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRG-------SQN 438 (514)
Q Consensus 368 ~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~-------~~~ 438 (514)
..+..+...+...|++++|...|++.. .+.+...+..+...+...|+ ++.|...++.+.+..|.+ ..+
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 81 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGD---YNKCRELCEKAIEVGRENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhcc---HHHHHHHHHHHHhhccccchhHHHHHHH
Confidence 455666677777777777777777764 33456677777777778888 888888888887777655 567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 046312 439 LVIVANKYAEVGMWEKVSNVRRFMKNVG 466 (514)
Q Consensus 439 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 466 (514)
+..++.+|...|++++|.+.+++..+..
T Consensus 82 ~~~la~~~~~~~~~~~A~~~~~~~~~~~ 109 (131)
T 1elr_A 82 YARIGNSYFKEEKYKDAIHFYNKSLAEH 109 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 7889999999999999999999887643
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.02 E-value=0.0013 Score=60.35 Aligned_cols=189 Identities=11% Similarity=0.021 Sum_probs=92.8
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC--CHHHHHHHHHhcCc---CCHHHHHHHHHHHHHcCC-hHHHHHHH
Q 046312 246 LSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCG--AVGCARLLFSRMEE---INVWTWSAMILGLAQHGY-AEEALELF 319 (514)
Q Consensus 246 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~-~~~a~~~~ 319 (514)
++++..+++.+.....+ +..+++.-.-++.+.| .+++++.+++.+.+ .|..+|+.-.-.+...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~PK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 34555555555555432 4445554444444555 35666666666654 345556555555555565 46667777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhcc--------------CcHHHHHHHHHHHHHhhCCCC-chHHHHHHHHHHHhc----
Q 046312 320 SNMKNSSISPNYVTFLGVLCACNHA--------------GMVEDGYRYFHEMEHVHGIKP-MRIHYHTMADILARA---- 380 (514)
Q Consensus 320 ~~m~~~g~~p~~~~~~~ll~~~~~~--------------~~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~---- 380 (514)
.++++.. +-|...|+.....+... +.++++.++++..... .| |...|+.+-..+.+.
T Consensus 169 ~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~---~P~d~SaW~Y~r~ll~~~~~~~ 244 (331)
T 3dss_A 169 DSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT---DPNDQSAWFYHRWLLGAGSGRC 244 (331)
T ss_dssp HHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHSSSCGG
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccCcc
Confidence 6666643 23444444433333322 3456666666666653 33 344454333333333
Q ss_pred -------CCHHHHHHHHHhCC-CCCCHHHHHHHHHH-----HHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHH
Q 046312 381 -------GHLKEAYTFIMNMP-FQPNPIVLRALLSA-----SSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVA 443 (514)
Q Consensus 381 -------g~~~~A~~~~~~~~-~~p~~~~~~~l~~~-----~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 443 (514)
+.++++++.++++. ..||. .|..+..+ ....+. .++....+.++.+++|....-|..+.
T Consensus 245 ~~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~---~~~~~~~l~~l~~~Dp~r~~~y~d~~ 316 (331)
T 3dss_A 245 ELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLY---EKETLQYFSTLKAVDPMRAAYLDDLR 316 (331)
T ss_dssp GCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTT---HHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhccccc---HHHHHHHHHHHHHhCcchhhHHHHHH
Confidence 23455555555553 34442 22211111 112233 45566666666666665544444433
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.00 E-value=2.8e-05 Score=62.48 Aligned_cols=93 Identities=11% Similarity=-0.070 Sum_probs=69.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCC-CCCC-------------HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhc----
Q 046312 370 YHTMADILARAGHLKEAYTFIMNMP-FQPN-------------PIVLRALLSASSIHDAKYQDGVGNEVRRRLLEL---- 431 (514)
Q Consensus 370 ~~~li~~~~~~g~~~~A~~~~~~~~-~~p~-------------~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~---- 431 (514)
+......+.+.|++++|++.|++.. ..|+ ...|..+..++...|+ +++|...+++++++
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr---~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRS---FDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHhhhcc
Confidence 3344455556666666666666553 2222 2377778888888888 88888888888888
Q ss_pred ---CCCCCchH----HHHHHHHHhcCCHHHHHHHHHHHHhC
Q 046312 432 ---EPRGSQNL----VIVANKYAEVGMWEKVSNVRRFMKNV 465 (514)
Q Consensus 432 ---~p~~~~~~----~~l~~~~~~~g~~~~A~~~~~~m~~~ 465 (514)
+|++..+| ...+.++...|++++|+..|++..+.
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 99888888 89999999999999999999988753
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.00 E-value=1.3e-05 Score=78.67 Aligned_cols=117 Identities=8% Similarity=-0.003 Sum_probs=92.6
Q ss_pred HHHhccCcHHHHHHHHHHHHHhhCCCCc-hHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCC
Q 046312 339 CACNHAGMVEDGYRYFHEMEHVHGIKPM-RIHYHTMADILARAGHLKEAYTFIMNMP-FQP-NPIVLRALLSASSIHDAK 415 (514)
Q Consensus 339 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~ 415 (514)
..+.+.|++++|...+++..+. .|+ ...|..+..+|.+.|++++|.+.++++. ..| +...+..+..++...|+
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~- 89 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK- 89 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTC-
T ss_pred HHHHHhCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-
Confidence 3456778888998888888864 443 7778888888999999999999988875 444 57788888889999999
Q ss_pred CcchHHHHHHHHHHhcCCCCCchHHHHHHH--HHhcCCHHHHHHHHHH
Q 046312 416 YQDGVGNEVRRRLLELEPRGSQNLVIVANK--YAEVGMWEKVSNVRRF 461 (514)
Q Consensus 416 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~ 461 (514)
+++|.+.++++.++.|++..++..++.+ +.+.|++++|.+.+++
T Consensus 90 --~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 90 --FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp --HHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred --HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 9999999999999999988888888777 8888999999999883
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.00 E-value=4e-05 Score=62.33 Aligned_cols=61 Identities=7% Similarity=-0.102 Sum_probs=29.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 046312 299 WSAMILGLAQHGYAEEALELFSNMKNS----SISP-NYVTFLGVLCACNHAGMVEDGYRYFHEMEH 359 (514)
Q Consensus 299 ~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 359 (514)
+..+...+...|++++|...+++..+. +..+ ...++..+...+...|++++|...+++..+
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 334444455555555555555544331 1111 123344555556666666666666665554
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.97 E-value=0.0001 Score=57.49 Aligned_cols=86 Identities=13% Similarity=0.066 Sum_probs=37.7
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCC-H---HHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCc----hHHHHHHH
Q 046312 303 ILGLAQHGYAEEALELFSNMKNSSISPN-Y---VTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPM----RIHYHTMA 374 (514)
Q Consensus 303 i~~~~~~~~~~~a~~~~~~m~~~g~~p~-~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~li 374 (514)
...+...|++++|...|++..+.. |+ . ..+..+..++...|++++|...++++.+. .|+ ...+..+.
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~la 83 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR---YPTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTSTTHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH---CCCCcccHHHHHHHH
Confidence 344445555555555555554421 11 1 23334444444455555555555544443 121 22333444
Q ss_pred HHHHhcCCHHHHHHHHHhC
Q 046312 375 DILARAGHLKEAYTFIMNM 393 (514)
Q Consensus 375 ~~~~~~g~~~~A~~~~~~~ 393 (514)
.++.+.|++++|...|+++
T Consensus 84 ~~~~~~g~~~~A~~~~~~~ 102 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQV 102 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHH
Confidence 4444444444444444443
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.96 E-value=3.3e-05 Score=62.87 Aligned_cols=93 Identities=9% Similarity=0.095 Sum_probs=57.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCC----CCCC----HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCC------
Q 046312 369 HYHTMADILARAGHLKEAYTFIMNMP----FQPN----PIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPR------ 434 (514)
Q Consensus 369 ~~~~li~~~~~~g~~~~A~~~~~~~~----~~p~----~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~------ 434 (514)
.+..+...+...|++++|.+.+++.. ..++ ...+..+...+...|+ +++|.+.++.+.+..+.
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~a~~~~~~~~~~~~ 127 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQD---YEKAIDYHLKHLAIAQELKDRIG 127 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHHHccchHh
Confidence 44455555555666666655555542 0111 3345555566666666 66666666666554211
Q ss_pred CCchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 046312 435 GSQNLVIVANKYAEVGMWEKVSNVRRFMKN 464 (514)
Q Consensus 435 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 464 (514)
....+..++.+|...|++++|.+.+++..+
T Consensus 128 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 128 EGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 123567889999999999999999988764
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.96 E-value=2.2e-05 Score=73.36 Aligned_cols=148 Identities=12% Similarity=-0.041 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHH
Q 046312 296 VWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMAD 375 (514)
Q Consensus 296 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 375 (514)
...+..+...+.+.|++++|...|++.+.. .|+... +...++.+++...+ ....|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l-----------~~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV-----------KNPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH-----------HTHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH-----------HHHHHHHHHH
Confidence 455667777788888999999988887763 344331 22333333332221 1136777888
Q ss_pred HHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHH-HhcCCH
Q 046312 376 ILARAGHLKEAYTFIMNMP--FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKY-AEVGMW 452 (514)
Q Consensus 376 ~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~ 452 (514)
+|.+.|++++|+..+++.. .+.+...|..+..++...|+ ++.|...++.+.+++|++..++..+..+. ...+..
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~---~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~ 315 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQ---MDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALY 315 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC---HHHHHHHHHHTTC-----------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Confidence 8888889999888888875 33367788888888888888 88888888888888888888887777774 445667
Q ss_pred HHHHHHHHHHHhCC
Q 046312 453 EKVSNVRRFMKNVG 466 (514)
Q Consensus 453 ~~A~~~~~~m~~~~ 466 (514)
+++...|+.|....
T Consensus 316 ~~a~~~~~~~l~~~ 329 (338)
T 2if4_A 316 QKQKEMYKGIFKGK 329 (338)
T ss_dssp --------------
T ss_pred HHHHHHHHHhhCCC
Confidence 77888888776543
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.94 E-value=6.5e-05 Score=70.98 Aligned_cols=138 Identities=7% Similarity=-0.036 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCC-chHHHHHHH
Q 046312 296 VWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKP-MRIHYHTMA 374 (514)
Q Consensus 296 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~li 374 (514)
...+..+...+.+.|++++|+..|++.++. .+... ..... +... ...| +...|..+.
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~~-------~~~~---~~~~~~~~~~~nla 280 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAED-------ADGA---KLQPVALSCVLNIG 280 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSCH-------HHHG---GGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccCh-------HHHH---HHHHHHHHHHHHHH
Confidence 345667777788888888888888877652 01000 00001 1111 1122 356788888
Q ss_pred HHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCH
Q 046312 375 DILARAGHLKEAYTFIMNMP-FQP-NPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMW 452 (514)
Q Consensus 375 ~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 452 (514)
.+|.+.|++++|++.++++. ..| +...+..+..++...|+ +++|.+.++++.++.|++..++..+..++...++.
T Consensus 281 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~---~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~ 357 (370)
T 1ihg_A 281 ACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKE---YDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQ 357 (370)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999998875 444 57888889999999999 99999999999999999988888999999888888
Q ss_pred HHHHHH
Q 046312 453 EKVSNV 458 (514)
Q Consensus 453 ~~A~~~ 458 (514)
+++.+.
T Consensus 358 ~~a~k~ 363 (370)
T 1ihg_A 358 KDKEKA 363 (370)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 877654
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=97.94 E-value=0.0023 Score=58.67 Aligned_cols=182 Identities=13% Similarity=0.037 Sum_probs=127.2
Q ss_pred HHHHHHHHHhcCc---CCHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCc-HHHHHHHH
Q 046312 281 VGCARLLFSRMEE---INVWTWSAMILGLAQHG--YAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGM-VEDGYRYF 354 (514)
Q Consensus 281 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~~a~~~~ 354 (514)
+++++.+++.+.. .+..+|+.-.-.+...+ .+++++.++.++.+.. +-|...|+.-...+...|. ++++.+.+
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 5677777777764 56778887777777777 4899999999999864 4466677766666777787 68999999
Q ss_pred HHHHHhhCCCCchHHHHHHHHHHHhc--------------CCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCC---
Q 046312 355 HEMEHVHGIKPMRIHYHTMADILARA--------------GHLKEAYTFIMNMP-FQP-NPIVLRALLSASSIHDAK--- 415 (514)
Q Consensus 355 ~~~~~~~~~~p~~~~~~~li~~~~~~--------------g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~--- 415 (514)
+.+.+.. +-|...|+.....+.+. +.++++++.+.+.. ..| |...|+-+-..+... ..
T Consensus 169 ~~~I~~~--p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~-~~~~~ 245 (331)
T 3dss_A 169 DSLITRN--FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAG-SGRCE 245 (331)
T ss_dssp HHHHHHC--SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSS-SCGGG
T ss_pred HHHHHHC--CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc-cCccc
Confidence 9999862 34566676665555544 45788888888875 445 566665444333333 11
Q ss_pred ------CcchHHHHHHHHHHhcCCCCCchHHHHHH---HHHhcCCHHHHHHHHHHHHhCC
Q 046312 416 ------YQDGVGNEVRRRLLELEPRGSQNLVIVAN---KYAEVGMWEKVSNVRRFMKNVG 466 (514)
Q Consensus 416 ------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~---~~~~~g~~~~A~~~~~~m~~~~ 466 (514)
..++++.+.++.+.++.|++.-.+..++. +....|..+++...+.++.+.+
T Consensus 246 ~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~D 305 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD 305 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHC
T ss_pred cchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhC
Confidence 12678888999999999998544443332 2235688889999999998644
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.89 E-value=8.3e-05 Score=57.56 Aligned_cols=88 Identities=8% Similarity=-0.060 Sum_probs=38.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCc-hHHHHHHHHHHHhc
Q 046312 302 MILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPM-RIHYHTMADILARA 380 (514)
Q Consensus 302 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~ 380 (514)
+...+.+.|++++|...|++.++.. +.+...+..+..++...|++++|...+++..+. .|+ ...+..+..++.+.
T Consensus 23 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l---~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 23 EGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARML---DPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHc
Confidence 3344444455555555554444421 112333444444444445555554444444432 222 33344444444444
Q ss_pred CCHHHHHHHHHhC
Q 046312 381 GHLKEAYTFIMNM 393 (514)
Q Consensus 381 g~~~~A~~~~~~~ 393 (514)
|++++|...+++.
T Consensus 99 g~~~~A~~~~~~a 111 (121)
T 1hxi_A 99 HNANAALASLRAW 111 (121)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 4444444444443
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.88 E-value=5.2e-05 Score=62.21 Aligned_cols=62 Identities=8% Similarity=-0.012 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 046312 400 IVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKN 464 (514)
Q Consensus 400 ~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 464 (514)
..|..+..++...|+ ++.|...++.+.+++|+++.+|..++.+|...|++++|...+++...
T Consensus 64 ~~~~nla~~~~~~~~---~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 64 PLYANMSQCYLNIGD---LHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHHHHHHHHHHHTC---HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCc---HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 345555555556666 66666666666666666655666666666666666666666665544
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.87 E-value=9.7e-06 Score=62.49 Aligned_cols=89 Identities=11% Similarity=0.139 Sum_probs=41.4
Q ss_pred cCcHHHHHHHHHHHHHhhCC-CC-chHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCCCcch
Q 046312 344 AGMVEDGYRYFHEMEHVHGI-KP-MRIHYHTMADILARAGHLKEAYTFIMNMP--FQPNPIVLRALLSASSIHDAKYQDG 419 (514)
Q Consensus 344 ~~~~~~a~~~~~~~~~~~~~-~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~~~ 419 (514)
.|++++|...|++..+. +. .| +...+..+..+|.+.|++++|...|+++. .+-+...+..+..++...|+ ++
T Consensus 3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~---~~ 78 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGR---YE 78 (117)
T ss_dssp ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC---HH
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCC---HH
Confidence 34555555555555531 10 12 23344455555555555555555555543 22234444555555555555 55
Q ss_pred HHHHHHHHHHhcCCCCC
Q 046312 420 VGNEVRRRLLELEPRGS 436 (514)
Q Consensus 420 ~a~~~~~~~~~~~p~~~ 436 (514)
+|...++.+.+..|+++
T Consensus 79 ~A~~~~~~al~~~p~~~ 95 (117)
T 3k9i_A 79 QGVELLLKIIAETSDDE 95 (117)
T ss_dssp HHHHHHHHHHHHHCCCH
T ss_pred HHHHHHHHHHHhCCCcH
Confidence 55555555555555443
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.86 E-value=2.3e-05 Score=73.23 Aligned_cols=151 Identities=6% Similarity=-0.105 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 046312 331 YVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMPFQPNPIVLRALLSASS 410 (514)
Q Consensus 331 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~ 410 (514)
...+..+...+.+.|++++|...|++.... .|+... +...|+.+++...+. ...|..+..++.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~~-------~~~~~~~~~~~~~l~-------~~~~~nla~~~~ 241 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY---MGDDFM-------FQLYGKYQDMALAVK-------NPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH---SCHHHH-------HTCCHHHHHHHHHHH-------THHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH---hccchh-------hhhcccHHHHHHHHH-------HHHHHHHHHHHH
Confidence 445666667777888888888888887754 454332 223344444443332 136778888999
Q ss_pred hcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCceeEEEECCeEEEEEec-c
Q 046312 411 IHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNVGLKKMKGMSWVELGGSIHRFYSG-Y 489 (514)
Q Consensus 411 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 489 (514)
..|+ ++.|...++.+.+++|++..+|..++.+|...|++++|...|++..+... .....+ ..+... .
T Consensus 242 ~~g~---~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p--~~~~a~-------~~L~~l~~ 309 (338)
T 2if4_A 242 KLKR---YDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAP--DDKAIR-------RELRALAE 309 (338)
T ss_dssp TTTC---CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC--CCHHHH-------HHHHHHHH
Confidence 9999 99999999999999999999999999999999999999999999876543 222233 222222 3
Q ss_pred cCCcChHHHHHHHHHHHHHhh
Q 046312 490 DSQVELAGIYQILETLNLHMK 510 (514)
Q Consensus 490 ~~~~~~~~a~~~~~~m~~~~~ 510 (514)
...+..+++..+|.+|....+
T Consensus 310 ~~~~~~~~a~~~~~~~l~~~p 330 (338)
T 2if4_A 310 QEKALYQKQKEMYKGIFKGKD 330 (338)
T ss_dssp ---------------------
T ss_pred HHHHHHHHHHHHHHHhhCCCC
Confidence 445567777778888766544
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.82 E-value=9.6e-05 Score=60.56 Aligned_cols=67 Identities=19% Similarity=0.062 Sum_probs=50.5
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCC
Q 046312 367 RIHYHTMADILARAGHLKEAYTFIMNMP--FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGS 436 (514)
Q Consensus 367 ~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 436 (514)
...|..+..+|.+.|++++|+..++++. .+.+...|..+..++...|+ ++.|...++.+.+++|+++
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~---~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWK---LDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCGGGH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhc---HHHHHHHHHHHHhcCCCCH
Confidence 4566777777788888888888877764 33356777778888888888 8888888888888888765
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.82 E-value=1.9e-05 Score=77.12 Aligned_cols=130 Identities=8% Similarity=-0.042 Sum_probs=94.0
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC----------------HHHHHHHHHHHHhcCCCCcchHHHHHHHHHH
Q 046312 367 RIHYHTMADILARAGHLKEAYTFIMNMP-FQPN----------------PIVLRALLSASSIHDAKYQDGVGNEVRRRLL 429 (514)
Q Consensus 367 ~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~----------------~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~ 429 (514)
...+..+...|.+.|++++|...|+++. ..|+ ...|..+..++...|+ ++.|...++++.
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~---~~~A~~~~~~al 344 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLRE---YTKAVECCDKAL 344 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHH
Confidence 3455666667777777777777777664 2222 5788889999999999 999999999999
Q ss_pred hcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCceeEEEECCeEEEEEecccCCcChHHHHH-HHHHHHHH
Q 046312 430 ELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNVGLKKMKGMSWVELGGSIHRFYSGYDSQVELAGIYQ-ILETLNLH 508 (514)
Q Consensus 430 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~~~m~~~ 508 (514)
+++|++..+|..++.+|...|++++|...|++..+... .....| ..+...+...++.+++.. ++.+|...
T Consensus 345 ~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P--~~~~a~-------~~l~~~~~~~~~~~~a~~~~~~~~f~k 415 (457)
T 1kt0_A 345 GLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP--QNKAAR-------LQISMCQKKAKEHNERDRRIYANMFKK 415 (457)
T ss_dssp HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC------CHH-------HHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred hcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--CCHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999987643 222223 234445555666655543 55555443
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.81 E-value=0.00029 Score=69.02 Aligned_cols=115 Identities=13% Similarity=0.055 Sum_probs=71.9
Q ss_pred HHHHhcCCHHHHHHHHHhcCc---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHH
Q 046312 273 DMYAKCGAVGCARLLFSRMEE---INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVED 349 (514)
Q Consensus 273 ~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 349 (514)
..+.+.|++++|.+.|++..+ .+...|..+..+|.+.|++++|+..+++..+.. +-+...+..+..+|...|++++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 344556666666666666543 345667777777777777777777777777642 2345667777777777788888
Q ss_pred HHHHHHHHHHhhCCCCc-hHHHHHHHHH--HHhcCCHHHHHHHHH
Q 046312 350 GYRYFHEMEHVHGIKPM-RIHYHTMADI--LARAGHLKEAYTFIM 391 (514)
Q Consensus 350 a~~~~~~~~~~~~~~p~-~~~~~~li~~--~~~~g~~~~A~~~~~ 391 (514)
|...+++..+. .|+ ...+..+..+ +.+.|++++|.+.++
T Consensus 93 A~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKV---KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHH---STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 88888777764 232 3344444444 667778888888777
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.73 E-value=1.1e-05 Score=61.14 Aligned_cols=92 Identities=12% Similarity=-0.038 Sum_probs=64.9
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCC------Cc
Q 046312 366 MRIHYHTMADILARAGHLKEAYTFIMNMP--FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRG------SQ 437 (514)
Q Consensus 366 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~ 437 (514)
+...+..+...+.+.|++++|.+.|++.. .+.+...+..+..++...|+ +++|.+.++.+.++.|++ ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGE---YTQAIQMCQQGLRYTSTAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTSCSSTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHhCCCccHHHHHHH
Confidence 44556667777777888888888887764 33356777777778888888 888888888888888876 45
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHH
Q 046312 438 NLVIVANKYAEVGMWEKVSNVRR 460 (514)
Q Consensus 438 ~~~~l~~~~~~~g~~~~A~~~~~ 460 (514)
.+..++.++...|+.++|...++
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHHHHhHhhhHhHHH
Confidence 56666666666666655554443
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.72 E-value=5.4e-05 Score=58.18 Aligned_cols=83 Identities=12% Similarity=0.145 Sum_probs=54.5
Q ss_pred cCChHHHHHHHHHHHHCCC-CC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCC-chHHHHHHHHHHHhcCCHHH
Q 046312 309 HGYAEEALELFSNMKNSSI-SP-NYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKP-MRIHYHTMADILARAGHLKE 385 (514)
Q Consensus 309 ~~~~~~a~~~~~~m~~~g~-~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~ 385 (514)
.|++++|+..|++.++.+. .| +...+..+..++...|++++|...+++..+. .| +...+..+..++.+.|++++
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~ 79 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ---FPNHQALRVFYAMVLYNLGRYEQ 79 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCchHHHHHHHHHHHHcCCHHH
Confidence 5677777788877776431 12 2455666777777778888888888877764 33 35566677777777888888
Q ss_pred HHHHHHhCC
Q 046312 386 AYTFIMNMP 394 (514)
Q Consensus 386 A~~~~~~~~ 394 (514)
|...+++..
T Consensus 80 A~~~~~~al 88 (117)
T 3k9i_A 80 GVELLLKII 88 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 887777664
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.64 E-value=0.0044 Score=61.90 Aligned_cols=172 Identities=8% Similarity=-0.088 Sum_probs=127.8
Q ss_pred CHHHHHHHHHhcCc---CCHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC-
Q 046312 280 AVGCARLLFSRMEE---INVWTWSAMILGLAQHGY----------AEEALELFSNMKNSSISPNYVTFLGVLCACNHAG- 345 (514)
Q Consensus 280 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~----------~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~- 345 (514)
..++|++.++.+.+ .+..+|+.--..+...|+ +++++..++++.+.. +-+..+|..-..++.+.+
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSS
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccc
Confidence 34566777777664 244566655555555555 889999999998753 345667777777778888
Q ss_pred -cHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcC-CHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCC------
Q 046312 346 -MVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAG-HLKEAYTFIMNMP-FQP-NPIVLRALLSASSIHDAK------ 415 (514)
Q Consensus 346 -~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~------ 415 (514)
+++++..+++++.+.. +-+...|+.-...+.+.| .++++++.++++. ..| |...|+.....+...++.
T Consensus 123 ~~~~~el~~~~k~l~~d--~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 123 PNWARELELCARFLEAD--ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHhhc--cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccc
Confidence 7799999999999752 345777877777777888 8999999998886 334 677777777666654221
Q ss_pred -----CcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHH
Q 046312 416 -----YQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEK 454 (514)
Q Consensus 416 -----~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 454 (514)
..++++.+.++.+.+++|++..+|..+...+.+.|+.++
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 226888899999999999999999999999999988554
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00052 Score=64.73 Aligned_cols=138 Identities=4% Similarity=-0.057 Sum_probs=83.9
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCcCCHHHHHHHHHHHHHcC
Q 046312 231 TTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEEINVWTWSAMILGLAQHG 310 (514)
Q Consensus 231 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~ 310 (514)
..+..+...+.+.|++++|...|++.++.-. .. ......+. .......+...|..+..+|.+.|
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~--~~----------~~~~~~~~----~~~~~~~~~~~~~nla~~~~~~g 287 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVE--GS----------RAAAEDAD----GAKLQPVALSCVLNIGACKLKMS 287 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--HH----------HHHSCHHH----HGGGHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh--cC----------ccccChHH----HHHHHHHHHHHHHHHHHHHHhcc
Confidence 3455566666666777777766666654210 00 00000000 00011123466777778888888
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCC-chHHHHHHHHHHHhcCCHHHHHH
Q 046312 311 YAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKP-MRIHYHTMADILARAGHLKEAYT 388 (514)
Q Consensus 311 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~ 388 (514)
++++|+..+++.++.. +-+...+..+..+|...|++++|...|+++.+. .| +...+..+...+.+.++.+++.+
T Consensus 288 ~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l---~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 288 DWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI---APEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp CHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888742 234667777778888888888888888888764 44 35556666666666666666643
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00031 Score=50.66 Aligned_cols=81 Identities=16% Similarity=0.140 Sum_probs=58.3
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHH
Q 046312 367 RIHYHTMADILARAGHLKEAYTFIMNMP--FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVAN 444 (514)
Q Consensus 367 ~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 444 (514)
...+..+...+.+.|++++|...+++.. .+.+...+..+...+...|+ +++|...++++.+..|+++.++..++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~a~~~~p~~~~~~~~l~~ 85 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGD---YDEAIEYYQKALELDPNNAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh---HHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 4456666777777777777777777764 23356667777777788888 888888888888888877777777777
Q ss_pred HHHhcC
Q 046312 445 KYAEVG 450 (514)
Q Consensus 445 ~~~~~g 450 (514)
++.+.|
T Consensus 86 ~~~~~g 91 (91)
T 1na3_A 86 AKQKQG 91 (91)
T ss_dssp HHHHHC
T ss_pred HHHhcC
Confidence 776544
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00014 Score=71.03 Aligned_cols=123 Identities=10% Similarity=0.043 Sum_probs=81.3
Q ss_pred HhccCcHHHHHHHHHHHHHhhC--CC---Cc-hHHHHHHHHHHHhcCCHHHHHHHHHhCC---------CCCC-HHHHHH
Q 046312 341 CNHAGMVEDGYRYFHEMEHVHG--IK---PM-RIHYHTMADILARAGHLKEAYTFIMNMP---------FQPN-PIVLRA 404 (514)
Q Consensus 341 ~~~~~~~~~a~~~~~~~~~~~~--~~---p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~---------~~p~-~~~~~~ 404 (514)
+...|++++|..++++..+... +. |+ ..+++.|...|...|++++|..++++.. ..|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 3355666666666655554311 11 22 3456666777777777777766666552 3333 356777
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHHHh-----cCCCCCc---hHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 046312 405 LLSASSIHDAKYQDGVGNEVRRRLLE-----LEPRGSQ---NLVIVANKYAEVGMWEKVSNVRRFMKNVG 466 (514)
Q Consensus 405 l~~~~~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 466 (514)
|...|...|+ +++|...++++.+ ++|+.+. ....+..++...|++++|...++++++..
T Consensus 399 La~~~~~~G~---~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 399 AGLTNWHAGH---IEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHTTC---HHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCC---HHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777 7777777777765 3566654 34578889999999999999999998644
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00038 Score=51.57 Aligned_cols=65 Identities=15% Similarity=0.134 Sum_probs=56.4
Q ss_pred CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 046312 398 NPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNV 465 (514)
Q Consensus 398 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 465 (514)
+...+..+...+...|+ +++|...++.+.+++|+++.+|..++.+|...|++++|.+.+++..+.
T Consensus 6 ~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDN---ASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 56778888888888899 999999999999999998888999999999999999999999887653
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00034 Score=56.16 Aligned_cols=69 Identities=10% Similarity=-0.007 Sum_probs=52.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCC-C-------CCCH-HHH----HHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCC
Q 046312 369 HYHTMADILARAGHLKEAYTFIMNMP-F-------QPNP-IVL----RALLSASSIHDAKYQDGVGNEVRRRLLELEPRG 435 (514)
Q Consensus 369 ~~~~li~~~~~~g~~~~A~~~~~~~~-~-------~p~~-~~~----~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~ 435 (514)
.|..+..++.+.|++++|+..+++.. . .|+. ..| .....++...|+ +++|...++++.++.|++
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr---~eEAl~~y~kAlel~p~d 135 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGR---GAEAMPEFKKVVEMIEER 135 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCC---HHHHHHHHHHHHhcCCCc
Confidence 66677777777777777777776654 4 6754 566 778888899999 999999999999998887
Q ss_pred CchHH
Q 046312 436 SQNLV 440 (514)
Q Consensus 436 ~~~~~ 440 (514)
.....
T Consensus 136 ~~~~~ 140 (159)
T 2hr2_A 136 KGETP 140 (159)
T ss_dssp CSCCT
T ss_pred HHHHH
Confidence 65544
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00014 Score=54.88 Aligned_cols=94 Identities=10% Similarity=0.022 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCc-------hH
Q 046312 296 VWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPM-------RI 368 (514)
Q Consensus 296 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-------~~ 368 (514)
...|..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...+++..+ +.|+ ..
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~~~ 79 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR---YTSTAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---SCSSTTSHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---hCCCccHHHHHHH
Confidence 3455566666777777777777777776642 23455666666777777777777777777763 3444 33
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC
Q 046312 369 HYHTMADILARAGHLKEAYTFIMNM 393 (514)
Q Consensus 369 ~~~~li~~~~~~g~~~~A~~~~~~~ 393 (514)
.+..+..++...|+.++|...++++
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHHHHhHhhhHhHHHHh
Confidence 4445555555666655555555444
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00093 Score=48.55 Aligned_cols=73 Identities=12% Similarity=0.044 Sum_probs=63.2
Q ss_pred CCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 046312 396 QPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNVGLK 468 (514)
Q Consensus 396 ~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 468 (514)
..|...+..+..++...++....+++...++++.+.+|+++.+...++..+.+.|++++|..+|+++.+....
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 3567778888888876666555799999999999999999999999999999999999999999999886543
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00085 Score=65.48 Aligned_cols=120 Identities=12% Similarity=-0.064 Sum_probs=60.0
Q ss_pred HhccCChHHHHHHHHHHHHhC---CCC----chhHHHHHHHHHHhcCCHHHHHHHHHhcCc----------CC-HHHHHH
Q 046312 240 CTELGNLSLGKWVHLQLIERG---TVL----NCQLGTALIDMYAKCGAVGCARLLFSRMEE----------IN-VWTWSA 301 (514)
Q Consensus 240 ~~~~g~~~~a~~~~~~~~~~~---~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----------~~-~~~~~~ 301 (514)
+...|++++|..++++.++.. +.+ ...+++.|..+|...|++++|+.++++..+ |+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 345566666666666555431 111 234555566666666666666665555442 11 234555
Q ss_pred HHHHHHHcCChHHHHHHHHHHHH-----CCC-CCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 046312 302 MILGLAQHGYAEEALELFSNMKN-----SSI-SPN-YVTFLGVLCACNHAGMVEDGYRYFHEMEH 359 (514)
Q Consensus 302 li~~~~~~~~~~~a~~~~~~m~~-----~g~-~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 359 (514)
|...|...|++++|+.++++..+ .|. .|+ ..+...+-.++...+.+++|...+..+.+
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666666666555543 121 111 12233344445555555555555555544
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.48 E-value=0.0023 Score=50.56 Aligned_cols=109 Identities=15% Similarity=-0.026 Sum_probs=55.2
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cCCHHHHH
Q 046312 210 WLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAK----CGAVGCAR 285 (514)
Q Consensus 210 ~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~ 285 (514)
++++|++.|++..+.| .|+.. +-..|...+.+++|...|+...+.| +...+..|...|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 4566666666666655 23322 4444444555555666666655554 34444445555544 44555555
Q ss_pred HHHHhcCc-CCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHCC
Q 046312 286 LLFSRMEE-INVWTWSAMILGLAQ----HGYAEEALELFSNMKNSS 326 (514)
Q Consensus 286 ~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g 326 (514)
++|++..+ .+...+..|...|.. .++.++|..+|++..+.|
T Consensus 82 ~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 55554433 334444444444444 445555555555544443
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=97.48 E-value=0.015 Score=44.14 Aligned_cols=147 Identities=14% Similarity=0.138 Sum_probs=108.8
Q ss_pred HHHHHH--HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHH
Q 046312 300 SAMILG--LAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADIL 377 (514)
Q Consensus 300 ~~li~~--~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 377 (514)
..||.+ +.-.|..++..++..+.... .+..-|+.+|.-....-+=+...++++.+-+.|.+.
T Consensus 9 kkLmeAK~~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis------------- 72 (172)
T 1wy6_A 9 RKLMDAKKFLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLD------------- 72 (172)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGG-------------
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCcH-------------
Confidence 344444 55678999999999988763 466778888887777777777788888776543332
Q ss_pred HhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHH
Q 046312 378 ARAGHLKEAYTFIMNMPFQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSN 457 (514)
Q Consensus 378 ~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 457 (514)
.+|+......-+-.+. .+....+..+......|. -+...++...+..-.+.++.....++.+|.+.|+..+|.+
T Consensus 73 -~C~NlKrVi~C~~~~n--~~se~vd~ALd~lv~~~K---kDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~e 146 (172)
T 1wy6_A 73 -KCQNLKSVVECGVINN--TLNEHVNKALDILVIQGK---RDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATT 146 (172)
T ss_dssp -GCSCTHHHHHHHHHTT--CCCHHHHHHHHHHHHTTC---HHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred -hhhcHHHHHHHHHHhc--chHHHHHHHHHHHHHhcc---HhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHH
Confidence 3555566555555554 345566667788888899 7777777777555455557888899999999999999999
Q ss_pred HHHHHHhCCCC
Q 046312 458 VRRFMKNVGLK 468 (514)
Q Consensus 458 ~~~~m~~~~~~ 468 (514)
++++..++|++
T Consensus 147 Ll~~AC~kG~k 157 (172)
T 1wy6_A 147 LLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHTTCH
T ss_pred HHHHHHHhhhH
Confidence 99999999985
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00057 Score=52.01 Aligned_cols=64 Identities=13% Similarity=0.009 Sum_probs=42.3
Q ss_pred CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 046312 398 NPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKN 464 (514)
Q Consensus 398 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 464 (514)
+...+..+...+...|+ ++.|...++.+.+.+|++..++..++.+|...|++++|...+++..+
T Consensus 18 ~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 18 NMLLRFTLGKTYAEHEQ---FDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccC---HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45556666666666666 66666666666666666666666667777777777777766666654
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00013 Score=58.47 Aligned_cols=50 Identities=8% Similarity=0.085 Sum_probs=43.2
Q ss_pred chHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC-----------CHHHHHHHHHHHHhCCC
Q 046312 418 DGVGNEVRRRLLELEPRGSQNLVIVANKYAEVG-----------MWEKVSNVRRFMKNVGL 467 (514)
Q Consensus 418 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~m~~~~~ 467 (514)
+++|...++++++++|+...+|..++.+|...| ++++|.+.|++..+.+.
T Consensus 62 ~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P 122 (158)
T 1zu2_A 62 IQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQP 122 (158)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCC
Confidence 458999999999999999999999999998875 89999999999887543
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=97.38 E-value=5.3e-06 Score=77.67 Aligned_cols=399 Identities=9% Similarity=0.029 Sum_probs=233.5
Q ss_pred ChHHHHHHHHhcccCCCCChHHHHHHHcccCCCCCcccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHH
Q 046312 59 DAQILKELVRFCTLSSSKNLTYARSILCNYVNDSVPIPWNNLIRGYAWSDRPREAVWVFIDMKRRGIKPTEFTYPFVLKA 138 (514)
Q Consensus 59 ~~~~~~~ll~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 138 (514)
.+.+|..|-.+.. +.|.+.+|...|-+ ..|+..|..+|.+..+.|++++-+..+...++.. -++..=+.|+-+
T Consensus 53 ~p~VWs~LgkAqL--~~~~v~eAIdsyIk---A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~a 125 (624)
T 3lvg_A 53 EPAVWSQLAKAQL--QKGMVKEAIDSYIK---ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFA 125 (624)
T ss_dssp CCCCSSSHHHHTT--TSSSCTTTTTSSCC---CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHH
T ss_pred CccHHHHHHHHHH--ccCchHHHHHHHHh---CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHH
Confidence 4567888888888 78888888776655 4477888899999999999999998887666542 233444578888
Q ss_pred HhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCHHHHHHHhhccC------------------------CCC
Q 046312 139 CAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKRDACKVFDDMC------------------------ERS 194 (514)
Q Consensus 139 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~------------------------~~~ 194 (514)
|++.+++.+-++++. .||..-...+.+-|...|.++.|.-+|..+. ..+
T Consensus 126 yAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns 198 (624)
T 3lvg_A 126 LAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANS 198 (624)
T ss_dssp HHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCS
T ss_pred HHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 998888877655442 4666666777788888888888877776662 136
Q ss_pred hhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 046312 195 VVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDM 274 (514)
Q Consensus 195 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 274 (514)
+.+|-.+-.+|...+.+.-|.-.--.++- .|| ....++..|-..|.+++-..+++...... .....+|+-|.-.
T Consensus 199 ~ktWKeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaIL 272 (624)
T 3lvg_A 199 TRTWKEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAIL 272 (624)
T ss_dssp SCSHHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHH
T ss_pred hhHHHHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHH
Confidence 77888888889888888776544333332 222 12235556777888888888777765321 2356678888877
Q ss_pred HHhcCCHHHHHHHHHhcCc-----------CCHHHHHHHHHHHHHcCChHHHHHHH-------------HHHHHCCCCCC
Q 046312 275 YAKCGAVGCARLLFSRMEE-----------INVWTWSAMILGLAQHGYAEEALELF-------------SNMKNSSISPN 330 (514)
Q Consensus 275 ~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~li~~~~~~~~~~~a~~~~-------------~~m~~~g~~p~ 330 (514)
|++- ++++..+.++..-. .....|.-++-.|..-.++|.|.... .+.+. -..|
T Consensus 273 YsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ltMi~h~~~Aw~h~~Fkdii~--KVaN 349 (624)
T 3lvg_A 273 YSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIIT--KVAN 349 (624)
T ss_dssp HHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHTTTSCHHHHCCGGGGTTTGG--GCSC
T ss_pred HHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHhCChhhccHHHHHHHHH--Hcch
Confidence 7765 55666665554322 24467888888888888888765432 11111 1234
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 046312 331 YVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMPFQPNPIVLRALLSASS 410 (514)
Q Consensus 331 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~ 410 (514)
...|-..|.-|.... +..--.++.-+.. .+.++ .+++.+.+.|++.-....+.......+...-.++-..|.
T Consensus 350 ~EiyYKAi~FYL~e~-P~lL~DLL~vL~p--rlDh~-----RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~I 421 (624)
T 3lvg_A 350 VELYYRAIQFYLEFK-PLLLNDLLMVLSP--RLDHT-----RAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFI 421 (624)
T ss_dssp SHHHHHHHHHHTTSC-CTTSHHHHHHHCT--TCCST-----TTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-hHHHHHHHHhccc--cCChH-----HHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 444444454444322 1111122222111 11111 123444445554444444444443344555555556666
Q ss_pred hcCCCCcchHHHHHHHHH---------HhcCCCC-CchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCceeEEEECC
Q 046312 411 IHDAKYQDGVGNEVRRRL---------LELEPRG-SQNLVIVANKYAEVGMWEKVSNVRRFMKNVGLKKMKGMSWVELGG 480 (514)
Q Consensus 411 ~~~~~~~~~~a~~~~~~~---------~~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~ 480 (514)
...| ++.-+...+.. .++..-+ ......-+..|.+.++|+++.++.++=+ + |
T Consensus 422 EEED---y~~LR~SId~ydNFD~i~LA~rLEkHeL~eFRrIAA~LYkkn~rw~qsi~l~KkDk---l-------y----- 483 (624)
T 3lvg_A 422 TEED---YQALRTSIDAYDNFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELCKKDS---L-------Y----- 483 (624)
T ss_dssp HTTC---CHHHHHTTSSCCCSCTTHHHHHHHTCSSHHHHHHHHHHHHTTCHHHHHSSCSSTTC---C-------T-----
T ss_pred hhhh---HHHHHHHHHHhccccHHHHHHHHhhCchHHHHHHHHHHHHhcccHHHHHHHHHhcc---c-------H-----
Confidence 6666 44433332211 1111111 1222355667777788888776654211 1 1
Q ss_pred eEEEEEecccCCcChHHHHHHHHHHHHH
Q 046312 481 SIHRFYSGYDSQVELAGIYQILETLNLH 508 (514)
Q Consensus 481 ~~~~~~~~~~~~~~~~~a~~~~~~m~~~ 508 (514)
..-+...+.+|+.+-+.++++-..+.
T Consensus 484 --kDAietAa~S~~~elaeeLL~yFv~~ 509 (624)
T 3lvg_A 484 --KDAMQYASESKDTELAEELLQWFLQE 509 (624)
T ss_dssp --TGGGTTTTTCCCTTHHHHHHHHHHHH
T ss_pred --HHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 11223345666777666666655443
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.36 E-value=0.0021 Score=50.85 Aligned_cols=109 Identities=14% Similarity=0.072 Sum_probs=57.0
Q ss_pred CchHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHc----CCCHHHHH
Q 046312 109 RPREAVWVFIDMKRRGIKPTEFTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGS----CRRKRDAC 184 (514)
Q Consensus 109 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~A~ 184 (514)
++++|++.|++..+.| +.... +-..+...+.+++|.+.|++..+.| +...+..|...|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g---~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN---EMFGC--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT---CTTHH--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC---CHhhh--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 4556666666666654 22222 4445555555666666666666554 34455555555555 45555555
Q ss_pred HHhhccC-CCChhhHHHHHHHHHh----CCChhHHHHHHHHHHHCC
Q 046312 185 KVFDDMC-ERSVVSWNVIITVCVE----NLWLGEAVGYFVKMKDLG 225 (514)
Q Consensus 185 ~~~~~~~-~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~ 225 (514)
++|++.. ..+...+..|...|.. .+++++|...|++..+.|
T Consensus 82 ~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 5555542 2344444445555544 455555555555554443
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0015 Score=49.53 Aligned_cols=63 Identities=10% Similarity=-0.051 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 046312 296 VWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEH 359 (514)
Q Consensus 296 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 359 (514)
...+..+...|...|++++|...|++..+.. +.+...+..+..++...|++++|...|++..+
T Consensus 19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444444444445555555555555544421 12233444444445555555555555554443
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0028 Score=46.71 Aligned_cols=63 Identities=16% Similarity=0.152 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 046312 296 VWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEH 359 (514)
Q Consensus 296 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 359 (514)
...|..+...|...|++++|+..|++.++.. +.+...|..+..+|...|++++|...+++..+
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3445555555555555555555555555532 11234455555555555666665555555543
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.07 E-value=0.023 Score=56.74 Aligned_cols=168 Identities=5% Similarity=-0.060 Sum_probs=105.1
Q ss_pred chHHHHHHHHHHHcCCCCCcc-hHHHHHHHHhccCC----------chHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCC
Q 046312 110 PREAVWVFIDMKRRGIKPTEF-TYPFVLKACAEISG----------LNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCR 178 (514)
Q Consensus 110 ~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 178 (514)
.++|++.++++... .|+.. .|+.--.++...|+ ++++++.++.+.+.. +-+..+|+.-..++.+.+
T Consensus 45 ~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 45 DESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp SHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCS
T ss_pred CHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcc
Confidence 34667777777664 34443 45555555555555 677777777777664 445666776667777777
Q ss_pred --CHHHHHHHhhcc---CCCChhhHHHHHHHHHhCC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc---------
Q 046312 179 --RKRDACKVFDDM---CERSVVSWNVIITVCVENL-WLGEAVGYFVKMKDLGFEPDETTMLVVLSACTEL--------- 243 (514)
Q Consensus 179 --~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~--------- 243 (514)
+++++.+.++++ ...+..+|+.-.-.+.+.| .++++++.++++.+.. +-|...|+.....+.+.
T Consensus 122 ~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 122 EPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp SCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred cccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhccccccccc
Confidence 557777777777 3345666666666666666 6777777777776654 33555665554444432
Q ss_pred -----CChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHH
Q 046312 244 -----GNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVG 282 (514)
Q Consensus 244 -----g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 282 (514)
+.++++.+.++.++...+. +...|.-+-..+.+.++.+
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~~~ 243 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEPHD 243 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCCCS
T ss_pred ccccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCCcc
Confidence 3456777777777766533 5666666666666555533
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0078 Score=42.90 Aligned_cols=64 Identities=14% Similarity=0.120 Sum_probs=35.1
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhC
Q 046312 196 VSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERG 260 (514)
Q Consensus 196 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 260 (514)
..+..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|...+++..+..
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 73 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 73 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 344455555556666666666666655542 2234455555555555666666666665555543
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.97 E-value=0.025 Score=59.37 Aligned_cols=153 Identities=10% Similarity=0.089 Sum_probs=97.4
Q ss_pred HHHHhCCCchHHHH-HHHHHHHcCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCH
Q 046312 102 RGYAWSDRPREAVW-VFIDMKRRGIKPTEFTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRK 180 (514)
Q Consensus 102 ~~~~~~g~~~~a~~-~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 180 (514)
......+++++|.+ ++..+ |+......++..+.+.|..+.|.++.+.- ..-.......|++
T Consensus 607 ~~~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~~------------~~~f~~~l~~~~~ 668 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPDQ------------DQKFELALKVGQL 668 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCCH------------HHHHHHHHHHTCH
T ss_pred hHHHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCCc------------chheehhhhcCCH
Confidence 33445678888776 54221 11222366777778888888887665311 1123455778999
Q ss_pred HHHHHHhhccCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhC
Q 046312 181 RDACKVFDDMCERSVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERG 260 (514)
Q Consensus 181 ~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 260 (514)
+.|.++.+.+. +...|..+...+.+.++++.|.+.|.++.+ |..+...+...|+.+...++.+.....|
T Consensus 669 ~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~ 737 (814)
T 3mkq_A 669 TLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTG 737 (814)
T ss_dssp HHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 99999887763 567899999999999999999999988743 3344444555677766666655555544
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHH
Q 046312 261 TVLNCQLGTALIDMYAKCGAVGCARLLFS 289 (514)
Q Consensus 261 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 289 (514)
. ++....+|.+.|++++|++++.
T Consensus 738 ~------~~~A~~~~~~~g~~~~a~~~~~ 760 (814)
T 3mkq_A 738 K------FNLAFNAYWIAGDIQGAKDLLI 760 (814)
T ss_dssp C------HHHHHHHHHHHTCHHHHHHHHH
T ss_pred c------hHHHHHHHHHcCCHHHHHHHHH
Confidence 2 2333445556666666665533
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.81 E-value=0.002 Score=51.63 Aligned_cols=86 Identities=10% Similarity=0.091 Sum_probs=52.1
Q ss_pred CcHHHHHHHHHHHHHhhCCCC-chHHHHHHHHHHHhcCC----------HHHHHHHHHhCC-CCC-CHHHHHHHHHHHHh
Q 046312 345 GMVEDGYRYFHEMEHVHGIKP-MRIHYHTMADILARAGH----------LKEAYTFIMNMP-FQP-NPIVLRALLSASSI 411 (514)
Q Consensus 345 ~~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~----------~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~ 411 (514)
+.+++|...++...+. .| +...|..+..++.+.|+ +++|+..|++.. +.| +...|..+..+|..
T Consensus 16 ~~feeA~~~~~~Ai~l---~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKS---NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 4455555555555543 23 34444445555554443 346666666654 333 44566666666655
Q ss_pred c-----------CCCCcchHHHHHHHHHHhcCCCCC
Q 046312 412 H-----------DAKYQDGVGNEVRRRLLELEPRGS 436 (514)
Q Consensus 412 ~-----------~~~~~~~~a~~~~~~~~~~~p~~~ 436 (514)
. |+ +++|.+.++++.+++|++.
T Consensus 93 lg~l~P~~~~a~g~---~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 93 FAFLTPDETEAKHN---FDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHHCCCHHHHHHH---HHHHHHHHHHHHHHCTTCH
T ss_pred hcccCcchhhhhcc---HHHHHHHHHHHHHhCCCCH
Confidence 4 46 9999999999999999875
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=96.79 E-value=0.38 Score=48.13 Aligned_cols=118 Identities=9% Similarity=0.044 Sum_probs=71.8
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHH----HHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhc
Q 046312 305 GLAQHGYAEEALELFSNMKNSSISPNYVT----FLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARA 380 (514)
Q Consensus 305 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~----~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 380 (514)
-+.+. +.+.|...+....+.. ..+... ...+.......+...++...+...... ..+.....-.+....+.
T Consensus 224 rlar~-d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~ 298 (618)
T 1qsa_A 224 SVARQ-DAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGT 298 (618)
T ss_dssp HHHHH-CHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHH
T ss_pred HHHhc-CHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHC
Confidence 33443 7789999998886543 223222 233333444455344555666665432 33333344445555678
Q ss_pred CCHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHh
Q 046312 381 GHLKEAYTFIMNMPFQP--NPIVLRALLSASSIHDAKYQDGVGNEVRRRLLE 430 (514)
Q Consensus 381 g~~~~A~~~~~~~~~~p--~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~ 430 (514)
|+++.|...|+.|...+ ...-.--+..+....|+ .+++...++.+.+
T Consensus 299 ~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~---~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 299 GDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGR---EAEAKEILHQLMQ 347 (618)
T ss_dssp TCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTC---HHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCC---HHHHHHHHHHHhc
Confidence 99999999999997322 23333345567778888 8888888888865
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0012 Score=48.43 Aligned_cols=64 Identities=13% Similarity=0.052 Sum_probs=42.9
Q ss_pred HHHHHHhcCCHHHHHHHHHhCC-CCC-CHH-HHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchH
Q 046312 373 MADILARAGHLKEAYTFIMNMP-FQP-NPI-VLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNL 439 (514)
Q Consensus 373 li~~~~~~g~~~~A~~~~~~~~-~~p-~~~-~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 439 (514)
....+.+.|++++|.+.|+++. ..| +.. .+..+...+...|+ +++|.+.++.+.+++|++..++
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGD---WQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCcHHHH
Confidence 3455666777777777777664 333 445 66667777777777 7777777777777777766554
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.70 E-value=0.034 Score=58.39 Aligned_cols=102 Identities=14% Similarity=0.012 Sum_probs=64.3
Q ss_pred HHHHcCCCHHHHHH-HhhccCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHH
Q 046312 172 RFYGSCRRKRDACK-VFDDMCERSVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGK 250 (514)
Q Consensus 172 ~~~~~~~~~~~A~~-~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~ 250 (514)
......+++++|.+ ++..+. +......++..+.+.|.++.|+++.+.-. . -.......|+++.|.
T Consensus 607 ~~~~~~~~~~~a~~~~l~~i~--~~~~~~~~~~~l~~~~~~~~a~~~~~~~~--------~----~f~~~l~~~~~~~A~ 672 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPNVE--GKDSLTKIARFLEGQEYYEEALNISPDQD--------Q----KFELALKVGQLTLAR 672 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGGCC--CHHHHHHHHHHHHHTTCHHHHHHHCCCHH--------H----HHHHHHHHTCHHHHH
T ss_pred hHHHHhCCHHHHHHHHHhcCC--chHHHHHHHHHHHhCCChHHheecCCCcc--------h----heehhhhcCCHHHHH
Confidence 33445778888877 554433 12223667777777888888776653211 1 122334567888887
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCc
Q 046312 251 WVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEE 293 (514)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 293 (514)
++.+.+ .+...|..+.+.+.+.|+++.|++.|.++.+
T Consensus 673 ~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d 709 (814)
T 3mkq_A 673 DLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD 709 (814)
T ss_dssp HHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC
T ss_pred HHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC
Confidence 775432 3567788888888888888888877776654
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.59 E-value=0.084 Score=48.64 Aligned_cols=66 Identities=15% Similarity=0.119 Sum_probs=34.1
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCC
Q 046312 366 MRIHYHTMADILARAGHLKEAYTFIMNMP-FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPR 434 (514)
Q Consensus 366 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~ 434 (514)
+...|..+...+...|++++|...++++. ..|+...|..+...+...|+ .++|.+.++++.+++|.
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~---~~eA~e~~~~AlrL~P~ 342 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGM---NREAADAYLTAFNLRPG 342 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHSCS
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhcCCC
Confidence 34444444444444455555555555554 33555555445555555555 55555555555555554
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.42 E-value=0.015 Score=42.36 Aligned_cols=55 Identities=15% Similarity=0.211 Sum_probs=43.1
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHhhCCCC-chH-HHHHHHHHHHhcCCHHHHHHHHHhCC
Q 046312 337 VLCACNHAGMVEDGYRYFHEMEHVHGIKP-MRI-HYHTMADILARAGHLKEAYTFIMNMP 394 (514)
Q Consensus 337 ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~-~~~~li~~~~~~g~~~~A~~~~~~~~ 394 (514)
....+...|++++|...++++.+. .| +.. .+..+..+|.+.|++++|.+.|++..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 62 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQT---EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAI 62 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH---CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345677788899999999888865 44 355 77788888888899999998888875
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.33 E-value=0.011 Score=52.25 Aligned_cols=108 Identities=6% Similarity=-0.076 Sum_probs=79.3
Q ss_pred HHHHHHHHhCC-CCCC---HHHHHHHHHHHHh-----cCCCCcchHHHHHHHHHHhcCCCC-CchHHHHHHHHHhc-CCH
Q 046312 384 KEAYTFIMNMP-FQPN---PIVLRALLSASSI-----HDAKYQDGVGNEVRRRLLELEPRG-SQNLVIVANKYAEV-GMW 452 (514)
Q Consensus 384 ~~A~~~~~~~~-~~p~---~~~~~~l~~~~~~-----~~~~~~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~ 452 (514)
..|...+++.. ..|+ ...|..|...|.. -|+ .++|++.++++.+++|+. ..++...++.++.. |+.
T Consensus 180 ~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd---~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 180 HAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGG---MEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCC---HHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCC---HHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 45556666654 5565 4567777777777 488 999999999999999975 88899999999885 999
Q ss_pred HHHHHHHHHHHhCCCCCCCceeEEEECCeEEEEEecccCCcChHHHHHHHHHHHHH
Q 046312 453 EKVSNVRRFMKNVGLKKMKGMSWVELGGSIHRFYSGYDSQVELAGIYQILETLNLH 508 (514)
Q Consensus 453 ~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~ 508 (514)
++|.+.+++.........|+... ...+.-++|..+++++.+.
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~l--------------an~~~q~eA~~LL~~~~d~ 298 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKL--------------LVILSQKRARWLKAHVQDF 298 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHH--------------HHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhH--------------HHHHHHHHHHHHHHHhHHh
Confidence 99999999998866543344332 4445667777777776553
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.31 E-value=0.065 Score=49.37 Aligned_cols=69 Identities=13% Similarity=0.119 Sum_probs=60.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 046312 395 FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNVGL 467 (514)
Q Consensus 395 ~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 467 (514)
...+..+|..+...+...|+ ++.|...++++.+++|+ ...|..++.++.-.|++++|.+.+++....+.
T Consensus 273 ~~~~a~~~~alal~~l~~gd---~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P 341 (372)
T 3ly7_A 273 LNNLSIIYQIKAVSALVKGK---TDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRP 341 (372)
T ss_dssp GTTCHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred CCcCHHHHHHHHHHHHhCCC---HHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 45678889888888888899 99999999999999975 55678999999999999999999999887654
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.22 E-value=0.012 Score=56.32 Aligned_cols=63 Identities=11% Similarity=-0.113 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHC-----C-CCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 046312 297 WTWSAMILGLAQHGYAEEALELFSNMKNS-----S-ISPN-YVTFLGVLCACNHAGMVEDGYRYFHEMEH 359 (514)
Q Consensus 297 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----g-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 359 (514)
.+++.+...|...|++++|+.++++.++- | -.|+ ..+++.|...|...|++++|..++++..+
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 34555555555566666666555555431 1 1222 23455666666666666666666665544
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0048 Score=59.15 Aligned_cols=82 Identities=2% Similarity=-0.149 Sum_probs=56.6
Q ss_pred cCCHHHHHHHHHhCC---------CCCC-HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhc-----CCCCCc---hHHH
Q 046312 380 AGHLKEAYTFIMNMP---------FQPN-PIVLRALLSASSIHDAKYQDGVGNEVRRRLLEL-----EPRGSQ---NLVI 441 (514)
Q Consensus 380 ~g~~~~A~~~~~~~~---------~~p~-~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~-----~p~~~~---~~~~ 441 (514)
.|++++|..++++.. ..|+ ..+++.|...|...|+ +++|...++++.++ +|+.+. .++.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~---~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 387 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQD---WEGALKYGQKIIKPYSKHYPVYSLNVASMWLK 387 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcC---HHHHHHHHHHHHHHHHHHcCCCChHHHHHHHH
Confidence 356666666665441 2222 2566777777777777 77777777776543 455543 5779
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh
Q 046312 442 VANKYAEVGMWEKVSNVRRFMKN 464 (514)
Q Consensus 442 l~~~~~~~g~~~~A~~~~~~m~~ 464 (514)
|+.+|...|++++|..++++..+
T Consensus 388 La~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 388 LGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccCHHHHHHHHHHHHH
Confidence 99999999999999999998764
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=95.94 E-value=0.027 Score=54.02 Aligned_cols=85 Identities=14% Similarity=0.000 Sum_probs=49.9
Q ss_pred HHhcCCHHHHHHHHHhcCc-------C-C---HHHHHHHHHHHHHcCChHHHHHHHHHHHHC-----C-CCCC-HHHHHH
Q 046312 275 YAKCGAVGCARLLFSRMEE-------I-N---VWTWSAMILGLAQHGYAEEALELFSNMKNS-----S-ISPN-YVTFLG 336 (514)
Q Consensus 275 ~~~~g~~~~A~~~~~~~~~-------~-~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----g-~~p~-~~~~~~ 336 (514)
+.+.|++++|+.++++..+ + + ..+++.+...|...|++++|+.++++.++- | -.|+ ..+++.
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 3345566666666554432 1 1 245666666777777777777777666541 2 1222 344666
Q ss_pred HHHHHhccCcHHHHHHHHHHHHH
Q 046312 337 VLCACNHAGMVEDGYRYFHEMEH 359 (514)
Q Consensus 337 ll~~~~~~~~~~~a~~~~~~~~~ 359 (514)
|...|...|++++|..++++..+
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Confidence 77777777777777777766554
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.89 E-value=0.038 Score=43.65 Aligned_cols=88 Identities=14% Similarity=0.064 Sum_probs=63.6
Q ss_pred CcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcC---CHHHHHHHHHhCC-CC-C--CHHHHHHHHHHHHhcCCCCc
Q 046312 345 GMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAG---HLKEAYTFIMNMP-FQ-P--NPIVLRALLSASSIHDAKYQ 417 (514)
Q Consensus 345 ~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~~~-~~-p--~~~~~~~l~~~~~~~~~~~~ 417 (514)
.....+.+-|.+.... + .++..+.-.+..++++.+ +.+++..+|++.. .. | +...+-.|.-++.+.++
T Consensus 12 ~~l~~~~~~y~~e~~~-~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~--- 86 (152)
T 1pc2_A 12 EDLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKE--- 86 (152)
T ss_dssp HHHHHHHHHHHHHHHT-T-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSC---
T ss_pred HHHHHHHHHHHHHHcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccC---
Confidence 4456667777776653 3 366777777788888887 5668888888875 22 4 24455556677889999
Q ss_pred chHHHHHHHHHHhcCCCCCc
Q 046312 418 DGVGNEVRRRLLELEPRGSQ 437 (514)
Q Consensus 418 ~~~a~~~~~~~~~~~p~~~~ 437 (514)
+++|.+.++.+.+++|++..
T Consensus 87 Y~~A~~y~~~lL~ieP~n~Q 106 (152)
T 1pc2_A 87 YEKALKYVRGLLQTEPQNNQ 106 (152)
T ss_dssp HHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHhcCCCCHH
Confidence 99999999999999998653
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=95.87 E-value=0.019 Score=55.03 Aligned_cols=116 Identities=11% Similarity=0.057 Sum_probs=83.7
Q ss_pred HHHHHhcCCHHHHHHHHHhCC------CCCC----HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhc-----CCCCCc-
Q 046312 374 ADILARAGHLKEAYTFIMNMP------FQPN----PIVLRALLSASSIHDAKYQDGVGNEVRRRLLEL-----EPRGSQ- 437 (514)
Q Consensus 374 i~~~~~~g~~~~A~~~~~~~~------~~p~----~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~-----~p~~~~- 437 (514)
+..+.+.|++++|.+++++.. ..|+ ..+++.|...|...|+ +++|....+++.++ +|+.+.
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~---~~eA~~~~~~~L~i~~~~lg~~Hp~~ 370 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGL---LEEALFYGTRTMEPYRIFFPGSHPVR 370 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHHHHSCSSCHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhcc---HHHHHHHHHHHHHhHHHHcCCCChHH
Confidence 444667888999988887652 2232 3678888889999999 99999988887754 455553
Q ss_pred --hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCceeEEEECCeEEEEEecccCCcChHHHHHHHHHHHHHhh
Q 046312 438 --NLVIVANKYAEVGMWEKVSNVRRFMKNVGLKKMKGMSWVELGGSIHRFYSGYDSQVELAGIYQILETLNLHMK 510 (514)
Q Consensus 438 --~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~ 510 (514)
.++.|+.+|...|++++|..++++..+.-.. ..| ..|+.+.++...+.+.+..++
T Consensus 371 a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~-----------------~lG-~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 371 GVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRV-----------------THG-REHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-----------------HTC-TTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH-----------------hcC-CCChHHHHHHHHHHHHHHHHh
Confidence 5779999999999999999999988652110 001 245567777777777776665
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.65 E-value=0.7 Score=37.48 Aligned_cols=129 Identities=7% Similarity=-0.043 Sum_probs=72.0
Q ss_pred HHHHcCCCHHHHHHHhhccCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHH
Q 046312 172 RFYGSCRRKRDACKVFDDMCERSVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKW 251 (514)
Q Consensus 172 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~ 251 (514)
......|+++.|.++.+++ .+...|..|.......|+++-|.+.|.+..+ +..+.-.|.-.|+.+...+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 4455667777777776655 3456777777777777777777777766532 2233334444566655555
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 046312 252 VHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEEINVWTWSAMILGLAQHGYAEEALELFSNM 322 (514)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 322 (514)
+-+.....|- ++.....+...|+++++.++|.+..+..... ......|-.+.|.++.+++
T Consensus 82 la~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~-----~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 82 MQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAEGGSLPLAY-----AVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHTTCHHHHH-----HHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHCCChHHHH-----HHHHHcCcHHHHHHHHHHh
Confidence 5554444441 2344455556677777777766655422111 1112245555666665554
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=95.20 E-value=0.75 Score=35.12 Aligned_cols=140 Identities=11% Similarity=-0.002 Sum_probs=75.2
Q ss_pred HhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH
Q 046312 206 VENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCAR 285 (514)
Q Consensus 206 ~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 285 (514)
.-.|..++..++..+.... .+..-|+.+|.-....-+-+-..++++.+-+ ..|. ..+|++....
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGk---iFDi----------s~C~NlKrVi 81 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGS---YFDL----------DKCQNLKSVV 81 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGG---GSCG----------GGCSCTHHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhh---hcCc----------HhhhcHHHHH
Confidence 3456666666666665553 2444444444444333343333333333221 1111 1223333333
Q ss_pred HHHHhcCcCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCC
Q 046312 286 LLFSRMEEINVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIK 364 (514)
Q Consensus 286 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 364 (514)
..+-.+-. +....+..+..+...|+-++-.+++.++.. ..+|++...-.+..+|.+.|+..++.+++.++-++ |++
T Consensus 82 ~C~~~~n~-~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k-G~k 157 (172)
T 1wy6_A 82 ECGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKK-GEK 157 (172)
T ss_dssp HHHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCH
T ss_pred HHHHHhcc-hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh-hhH
Confidence 33322221 333445566677777888887777777543 24667777777778888888888888887777765 543
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.14 E-value=1.1 Score=36.43 Aligned_cols=102 Identities=14% Similarity=0.072 Sum_probs=50.5
Q ss_pred HHhcCCHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 046312 275 YAKCGAVGCARLLFSRMEEINVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYF 354 (514)
Q Consensus 275 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 354 (514)
..+.|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+... +..+.-.|...|+.+....+-
T Consensus 15 AL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kla 83 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKMQ 83 (177)
T ss_dssp HHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHHH
Confidence 34455555555555444 3455566666666666666666666655432 233333344455555444433
Q ss_pred HHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 046312 355 HEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP 394 (514)
Q Consensus 355 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 394 (514)
+....+ | -++.-...+.-.|+++++.++|.+..
T Consensus 84 ~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 84 NIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 333321 1 12223333445566666666666554
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.14 E-value=0.27 Score=38.83 Aligned_cols=84 Identities=13% Similarity=0.063 Sum_probs=60.4
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHHhhCCCC--chHHHHHHHHHHHhcCCHHHH
Q 046312 312 AEEALELFSNMKNSSISPNYVTFLGVLCACNHAG---MVEDGYRYFHEMEHVHGIKP--MRIHYHTMADILARAGHLKEA 386 (514)
Q Consensus 312 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A 386 (514)
...+.+-|.+....|. ++..+-..+..++++++ +++++..+++++.+. . .| +...+-.|.-++.+.|++++|
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-G-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-S-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-CccchHHHHHHHHHHHHHccCHHHH
Confidence 3455666666666553 67777667777888877 667888999988875 2 25 355556677778899999999
Q ss_pred HHHHHhCC-CCCC
Q 046312 387 YTFIMNMP-FQPN 398 (514)
Q Consensus 387 ~~~~~~~~-~~p~ 398 (514)
.+.++.+. ..|+
T Consensus 91 ~~y~~~lL~ieP~ 103 (152)
T 1pc2_A 91 LKYVRGLLQTEPQ 103 (152)
T ss_dssp HHHHHHHHHHCTT
T ss_pred HHHHHHHHhcCCC
Confidence 99998885 5664
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=94.49 E-value=0.00058 Score=64.26 Aligned_cols=240 Identities=14% Similarity=0.156 Sum_probs=161.5
Q ss_pred CcccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHH
Q 046312 93 VPIPWNNLIRGYAWSDRPREAVWVFIDMKRRGIKPTEFTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVR 172 (514)
Q Consensus 93 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 172 (514)
.+..|..|..+..+.|+..+|++.|-+ .-|+..|..++.++.+.|.++.-..++...++. ..++.+=+.|+-
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIk------A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ 124 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIF 124 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCC------CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHh------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHH
Confidence 556799999999999999999988732 136677999999999999999999999887765 345556678999
Q ss_pred HHHcCCCHHHHHHHhhccCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCC--------------------CCCCHHH
Q 046312 173 FYGSCRRKRDACKVFDDMCERSVVSWNVIITVCVENLWLGEAVGYFVKMKDLG--------------------FEPDETT 232 (514)
Q Consensus 173 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--------------------~~p~~~t 232 (514)
+|++.+++.+-++++. .||..-...+.+-|...|.++.|.-+|..+..-. -.-+..|
T Consensus 125 ayAk~~rL~elEefl~---~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~kt 201 (624)
T 3lvg_A 125 ALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRT 201 (624)
T ss_dssp HHHTSCSSSTTTSTTS---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCS
T ss_pred HHHhhCcHHHHHHHHc---CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhH
Confidence 9999999877555443 3565556667777777777777766665542110 1235678
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---cCCHHHHHHHHHHHHHc
Q 046312 233 MLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRME---EINVWTWSAMILGLAQH 309 (514)
Q Consensus 233 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~ 309 (514)
|..+-.+|...+.+..|.-.--.++-. ..-...++..|-..|.+++-+.+++... +.....|+-|.-.|++-
T Consensus 202 WKeV~~ACvd~~EfrLAqicGLniIvh-----adeL~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsKY 276 (624)
T 3lvg_A 202 WKEVCFACVDGKEFRLAQMCGLHIVVH-----ADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF 276 (624)
T ss_dssp HHHHTHHHHHSCTTTTTTHHHHHHHCC-----SSCCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHSS
T ss_pred HHHHHHHHhCchHHHHHHHhcchhccc-----HHHHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhc
Confidence 888888888888877765443333322 1122346677888888888888887655 36777888888888765
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 046312 310 GYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFH 355 (514)
Q Consensus 310 ~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 355 (514)
++++..+.++..-. +.|. -.+|++|.+..-|.++.-++.
T Consensus 277 -~PeKlmEHlklf~s---riNi---pKviracE~ahLW~ElvfLY~ 315 (624)
T 3lvg_A 277 -KPQKMREHLELFWS---RVNI---PKVLRAAEQAHLWAELVFLYD 315 (624)
T ss_dssp -CTTHHHHHHTTSSS---SSCC---TTTHHHHTTTTCHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHH---hccH---HHHHHHHHHHhhHHHHHHHHh
Confidence 34444444433211 1121 124556666655555554444
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=94.42 E-value=0.21 Score=36.73 Aligned_cols=65 Identities=14% Similarity=0.100 Sum_probs=37.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCC---------CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCch
Q 046312 371 HTMADILARAGHLKEAYTFIMNMP---------FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQN 438 (514)
Q Consensus 371 ~~li~~~~~~g~~~~A~~~~~~~~---------~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 438 (514)
-.|...+.+.|+++.|...|+.+. ..+....+..|..++.+.|+ ++.|....+.+.++.|++..+
T Consensus 9 ~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~---~~~A~~~~~~al~l~P~~~~~ 82 (104)
T 2v5f_A 9 FELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGD---LDKALLLTKKLLELDPEHQRA 82 (104)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccC---HHHHHHHHHHHHhcCCCCHHH
Confidence 344555555555555555554442 01234556666666667776 677777777777777766543
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=94.32 E-value=0.17 Score=38.36 Aligned_cols=89 Identities=13% Similarity=0.021 Sum_probs=47.9
Q ss_pred cCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHH---HHHHHHhCC-CC-C--CHHHHHHHHHHHHhcCCCC
Q 046312 344 AGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKE---AYTFIMNMP-FQ-P--NPIVLRALLSASSIHDAKY 416 (514)
Q Consensus 344 ~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~---A~~~~~~~~-~~-p--~~~~~~~l~~~~~~~~~~~ 416 (514)
......+.+-|.+.... |. ++..+--.+..++.+..+... ++.+++++. .. | .....-.|.-++.+.|+
T Consensus 14 ~~~l~~~~~~y~~e~~~-~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~-- 89 (126)
T 1nzn_A 14 VEDLLKFEKKFQSEKAA-GS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKE-- 89 (126)
T ss_dssp HHHHHHHHHHHHHHHHH-SC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHhcc-CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhh--
Confidence 33444555555555443 32 444444455566666665544 666666654 21 2 12223334456666666
Q ss_pred cchHHHHHHHHHHhcCCCCCc
Q 046312 417 QDGVGNEVRRRLLELEPRGSQ 437 (514)
Q Consensus 417 ~~~~a~~~~~~~~~~~p~~~~ 437 (514)
+++|.+.++.+.+.+|++..
T Consensus 90 -Y~~A~~~~~~lL~~eP~n~Q 109 (126)
T 1nzn_A 90 -YEKALKYVRGLLQTEPQNNQ 109 (126)
T ss_dssp -HHHHHHHHHHHHHHCTTCHH
T ss_pred -HHHHHHHHHHHHHhCCCCHH
Confidence 67777777777776666543
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=94.29 E-value=2.9 Score=37.58 Aligned_cols=169 Identities=9% Similarity=-0.082 Sum_probs=107.0
Q ss_pred hHHHHHHHHHcCCCHHHHHHHhhccCCCChhhHHHHHHHHHhCCChhHHHH----HHHHHHHCCCCCCHHHHHHHHHHHh
Q 046312 166 TNNNLVRFYGSCRRKRDACKVFDDMCERSVVSWNVIITVCVENLWLGEAVG----YFVKMKDLGFEPDETTMLVVLSACT 241 (514)
Q Consensus 166 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~----~~~~m~~~~~~p~~~t~~~ll~~~~ 241 (514)
.|.++..-|.+.+++++|.+++.. -...+.+.|++..|-. +++...+.+++++......++..+.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 455666778888999999887643 2344667788766555 4556666788999988888888876
Q ss_pred ccCChH-HHHHHHHHHHH----hC--CCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCcCCHHHHHHHHHHHHHc---CC
Q 046312 242 ELGNLS-LGKWVHLQLIE----RG--TVLNCQLGTALIDMYAKCGAVGCARLLFSRMEEINVWTWSAMILGLAQH---GY 311 (514)
Q Consensus 242 ~~g~~~-~a~~~~~~~~~----~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~---~~ 311 (514)
....-+ .-.++++.+++ .| ..-++.....+...|.+.|++.+|+..|-.-...+...+..++--+... |.
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~ 183 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIE 183 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCC
Confidence 643221 22344444443 33 2236778888999999999999999888744333455555555444443 33
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHh
Q 046312 312 AEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHV 360 (514)
Q Consensus 312 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 360 (514)
..++-- ..-..++ .|...|+...|..+++...+.
T Consensus 184 ~~e~dl--------------f~~RaVL-~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 184 DSTVAE--------------FFSRLVF-NYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp HHHHHH--------------HHHHHHH-HHHHTTBHHHHHHHHHHHHHH
T ss_pred cchHHH--------------HHHHHHH-HHHHhcCHHHHHHHHHHHHHH
Confidence 333221 1112222 345668888898888877654
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=94.24 E-value=0.5 Score=36.91 Aligned_cols=96 Identities=8% Similarity=0.132 Sum_probs=53.7
Q ss_pred CCCcccHHHHHHHHHhCCCc------hHHHHHHHHHHHcCCCCCcc-hHHHHHHH------HhccCCchHHHHHHHHHHH
Q 046312 91 DSVPIPWNNLIRGYAWSDRP------REAVWVFIDMKRRGIKPTEF-TYPFVLKA------CAEISGLNEGMQVQANVTK 157 (514)
Q Consensus 91 ~~~~~~~~~li~~~~~~g~~------~~a~~~~~~m~~~~~~p~~~-~~~~ll~~------~~~~g~~~~a~~~~~~~~~ 157 (514)
..|+.+|-..+...-+.|++ +...++|++.... ++|+.. .|..-+.. +...+++++|.++|+.+++
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 56778888888888888888 8888888887765 666542 11111111 1233677777777776655
Q ss_pred hCCCCCcchHHHHHHHHHcCCCHHHHHHHhh
Q 046312 158 SGLDSDVYTNNNLVRFYGSCRRKRDACKVFD 188 (514)
Q Consensus 158 ~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~ 188 (514)
.+-.- ..+|......-.+.|++++|.+++.
T Consensus 89 ~hKkF-AKiwi~~AqFEiRqgnl~kARkILg 118 (161)
T 4h7y_A 89 NCKKF-AFVHISFAQFELSQGNVKKSKQLLQ 118 (161)
T ss_dssp HCTTB-HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HhHHH-HHHHHHHHHHHHHcccHHHHHHHHH
Confidence 42111 2333333333344444444444443
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=94.11 E-value=0.23 Score=36.47 Aligned_cols=62 Identities=3% Similarity=-0.161 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 046312 298 TWSAMILGLAQHGYAEEALELFSNMKNSS------ISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEH 359 (514)
Q Consensus 298 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g------~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 359 (514)
-+..+...+.+.|++..|..+|+...+.- -.+....+..+..++.+.|+++.|..+++++.+
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 34455666666677777777776665421 112344455556666666666666666666654
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=93.97 E-value=0.5 Score=33.81 Aligned_cols=66 Identities=12% Similarity=-0.054 Sum_probs=34.0
Q ss_pred chHHHHHHHHHHHhcCC---HHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCC
Q 046312 366 MRIHYHTMADILARAGH---LKEAYTFIMNMP--FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPR 434 (514)
Q Consensus 366 ~~~~~~~li~~~~~~g~---~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~ 434 (514)
+...+..+..++...++ .++|..++++.. .+-+......+...+...|+ ++.|...++.+.+.+|.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~---y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFR---FQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTCCCT
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCC
Confidence 34444444444433332 455555555553 22234455555555555666 66666666666665555
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=93.76 E-value=0.15 Score=45.10 Aligned_cols=106 Identities=12% Similarity=0.157 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHhhCCCCc---hHHHHHHHHHHHh-----cCCHHHHHHHHHhCC-CCCC--HHHHHHHHHHHHhc-CC
Q 046312 347 VEDGYRYFHEMEHVHGIKPM---RIHYHTMADILAR-----AGHLKEAYTFIMNMP-FQPN--PIVLRALLSASSIH-DA 414 (514)
Q Consensus 347 ~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~-----~g~~~~A~~~~~~~~-~~p~--~~~~~~l~~~~~~~-~~ 414 (514)
...|...+++..+. .|+ ...|..+...|.+ -|+.++|.+.|++.. +.|+ ..++......++.. ++
T Consensus 179 l~~A~a~lerAleL---DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd 255 (301)
T 3u64_A 179 VHAAVMMLERACDL---WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN 255 (301)
T ss_dssp HHHHHHHHHHHHHH---CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHHHHHh---CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC
Confidence 34455555555543 555 4456666666766 377777777777765 5552 55565666666663 66
Q ss_pred CCcchHHHHHHHHHHhcCCCC-CchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 046312 415 KYQDGVGNEVRRRLLELEPRG-SQNLVIVANKYAEVGMWEKVSNVRRFMKN 464 (514)
Q Consensus 415 ~~~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 464 (514)
.+.+.+.++++....|.. +. ..+. ..+.-++|..+++++.+
T Consensus 256 ---~~~a~~~L~kAL~a~p~~~P~--~~la----n~~~q~eA~~LL~~~~d 297 (301)
T 3u64_A 256 ---RAGFDEALDRALAIDPESVPH--NKLL----VILSQKRARWLKAHVQD 297 (301)
T ss_dssp ---HHHHHHHHHHHHHCCGGGCSS--CHHH----HHHHHHHHHHHHHTHHH
T ss_pred ---HHHHHHHHHHHHcCCCCCCCC--hhHH----HHHHHHHHHHHHHHhHH
Confidence 777777777777776653 22 1222 22334555555555443
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=93.74 E-value=1.4 Score=34.01 Aligned_cols=70 Identities=10% Similarity=-0.030 Sum_probs=35.9
Q ss_pred CCchHHHHHHHHHHHhcCCHH---HHHHHHHhCC-CCC--CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCC
Q 046312 364 KPMRIHYHTMADILARAGHLK---EAYTFIMNMP-FQP--NPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGS 436 (514)
Q Consensus 364 ~p~~~~~~~li~~~~~~g~~~---~A~~~~~~~~-~~p--~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 436 (514)
.|+..+--.+..++.+..+.+ +++.+++++- ..| .....-.|.-++.+.|+ +++|.+..+.+.+++|++.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~---Y~~Ar~y~d~lL~~eP~n~ 111 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGE---YSMAKRYVDTLFEHERNNK 111 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTC---HHHHHHHHHHHHHTCCCCH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhh---HHHHHHHHHHHHhcCCCcH
Confidence 344444444555555554433 4455555543 222 12223334445666666 6666666666666666654
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=93.09 E-value=3.7 Score=42.90 Aligned_cols=18 Identities=11% Similarity=-0.140 Sum_probs=9.7
Q ss_pred HHcCCCHHHHHHHhhccC
Q 046312 174 YGSCRRKRDACKVFDDMC 191 (514)
Q Consensus 174 ~~~~~~~~~A~~~~~~~~ 191 (514)
....|+.+++..+++...
T Consensus 384 lIh~g~~~~gl~~L~~yL 401 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYL 401 (963)
T ss_dssp HHTSSCTTTHHHHHTTTS
T ss_pred hhccCchHHHHHHHHHhc
Confidence 445555555555555553
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=93.09 E-value=4.9 Score=36.36 Aligned_cols=168 Identities=10% Similarity=0.027 Sum_probs=106.0
Q ss_pred hHHHHHHHHHcCCCHHHHHHHhhccCCCChhhHHHHHHHHHhCCChhHHHHH----HHHHHHCCCCCCHHHHHHHHHHHh
Q 046312 166 TNNNLVRFYGSCRRKRDACKVFDDMCERSVVSWNVIITVCVENLWLGEAVGY----FVKMKDLGFEPDETTMLVVLSACT 241 (514)
Q Consensus 166 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~----~~~m~~~~~~p~~~t~~~ll~~~~ 241 (514)
.|.++..-|.+.+++++|.+++-. -...+.+.|+...+-++ ++...+.++++|..+...++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 445566678899999999987633 23456677777655444 466667789999998888888887
Q ss_pred ccCChH-HHHHHHHHHHH----hC--CCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCChHH
Q 046312 242 ELGNLS-LGKWVHLQLIE----RG--TVLNCQLGTALIDMYAKCGAVGCARLLFSRMEEINVWTWSAMILGLAQHGYAEE 314 (514)
Q Consensus 242 ~~g~~~-~a~~~~~~~~~----~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 314 (514)
....-+ .=..+.+.+++ .| ..-++.....+...|.+.+++.+|+..|-.-.++....+..++.-+...+...
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~- 184 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESH- 184 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGG-
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCc-
Confidence 665421 22334444443 33 33467778889999999999999999885433334456655554444433211
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 046312 315 ALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEH 359 (514)
Q Consensus 315 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 359 (514)
.++...-..++ -|...++...|..+++...+
T Consensus 185 -------------e~dlfiaRaVL-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 185 -------------TAPLYCARAVL-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp -------------GHHHHHHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred -------------cHHHHHHHHHH-HHHHhCCHHHHHHHHHHHHH
Confidence 12222223333 35556888888887776664
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.86 E-value=4.3 Score=38.83 Aligned_cols=236 Identities=9% Similarity=0.039 Sum_probs=119.9
Q ss_pred CCCChHHHHHHHHhcccCCCCChHHHHHHHcccCCCCC--cccHHHHHHH----HHhCCCchH--HHHHHHHHHH--cC-
Q 046312 56 LQNDAQILKELVRFCTLSSSKNLTYARSILCNYVNDSV--PIPWNNLIRG----YAWSDRPRE--AVWVFIDMKR--RG- 124 (514)
Q Consensus 56 ~~~~~~~~~~ll~~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~li~~----~~~~g~~~~--a~~~~~~m~~--~~- 124 (514)
......+...++..|. ..|+++...+.+.-+..... ..+-..+++. +......+. -+.+.+.... .|
T Consensus 52 ~~s~~r~l~~iv~l~~--~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~~d~~~~~~~i~~l~~vte~k 129 (445)
T 4b4t_P 52 LASSKEVLAKIVDLLA--SRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKSLDLNTRISVIETIRVVTENK 129 (445)
T ss_dssp TTTCHHHHHHHHHHHH--HHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHCCSSSSSCC
T ss_pred hhhHHHHHHHHHHHHH--HhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccc
Confidence 3444667778888888 88888887666554431111 1222233322 222222221 1122211111 01
Q ss_pred CCC---CcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCC-----cchHHHHHHHHHcCCCHHHHHHHhhcc------
Q 046312 125 IKP---TEFTYPFVLKACAEISGLNEGMQVQANVTKSGLDSD-----VYTNNNLVRFYGSCRRKRDACKVFDDM------ 190 (514)
Q Consensus 125 ~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~~~~~~A~~~~~~~------ 190 (514)
+-. .......|...+...|++.+|..++..+...-...+ ...+...+..|...+++.+|..++.++
T Consensus 130 iflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~ 209 (445)
T 4b4t_P 130 IFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFK 209 (445)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcc
Confidence 000 001124566777788888888888888754311111 245666777888888888888777765
Q ss_pred --CCCC--hhhHHHHHHHHHhCCChhHHHHHHHHHHHC-CCCCCHHHHH----HHHHHHhccCChHHHHHHHHHHHHhCC
Q 046312 191 --CERS--VVSWNVIITVCVENLWLGEAVGYFVKMKDL-GFEPDETTML----VVLSACTELGNLSLGKWVHLQLIERGT 261 (514)
Q Consensus 191 --~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~t~~----~ll~~~~~~g~~~~a~~~~~~~~~~~~ 261 (514)
..++ ...|...+..+...++|.+|.+.|.+..+. ....|...+. .++.+..-.+....-..+.........
T Consensus 210 ~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~ 289 (445)
T 4b4t_P 210 NPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNN 289 (445)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSS
T ss_pred cCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhccc
Confidence 1111 234556666777778888887777766542 1112222111 111111112222222223333333333
Q ss_pred CCchhHHHHHHHHHHhc--CCHHHHHHHHHhcCc
Q 046312 262 VLNCQLGTALIDMYAKC--GAVGCARLLFSRMEE 293 (514)
Q Consensus 262 ~~~~~~~~~li~~~~~~--g~~~~A~~~~~~~~~ 293 (514)
.++...|..++.+|... .+++...+.|.....
T Consensus 290 ~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~ 323 (445)
T 4b4t_P 290 LKKLESQESLVKLFTTNELMRWPIVQKTYEPVLN 323 (445)
T ss_dssp CHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSSTT
T ss_pred ccccHHHHHHHHHHHhchHhhhHHHHHHHHHHhc
Confidence 34566777777777654 356666666665543
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=92.84 E-value=0.5 Score=36.03 Aligned_cols=28 Identities=14% Similarity=0.051 Sum_probs=13.4
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHHHhcCCCC
Q 046312 405 LLSASSIHDAKYQDGVGNEVRRRLLELEPRG 435 (514)
Q Consensus 405 l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~ 435 (514)
|.-|+.+.|+ ++.|.+..+.+.+..|++
T Consensus 84 LAvg~yklgd---Y~~Ar~y~d~lL~~eP~N 111 (134)
T 3o48_A 84 LTIGCYKLGE---YSMAKRYVDTLFEHERNN 111 (134)
T ss_dssp HHHHHHHHTC---HHHHHHHHHHHHTTCTTC
T ss_pred HHHHHHHhhh---HHHHHHHHHHHHhhCCCC
Confidence 3334444444 455555555555544444
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.67 E-value=0.49 Score=48.31 Aligned_cols=53 Identities=13% Similarity=-0.081 Sum_probs=48.6
Q ss_pred HHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 046312 408 ASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMK 463 (514)
Q Consensus 408 ~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 463 (514)
-+...|+ ++.|.++.+++...-|.+..+|..|+.+|.+.|+++.|.-.+..+.
T Consensus 346 FLl~K~~---~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 346 FLLNRGD---YELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHTTC---HHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHhccCc---HHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 4566788 9999999999999999999999999999999999999999999885
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=92.15 E-value=1.2 Score=33.76 Aligned_cols=91 Identities=13% Similarity=0.024 Sum_probs=61.0
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHH---HHHHHHHHHHhhCCCC--chHHHHHHHHHHHh
Q 046312 305 GLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVED---GYRYFHEMEHVHGIKP--MRIHYHTMADILAR 379 (514)
Q Consensus 305 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~---a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~ 379 (514)
..........+.+-|.+....|. ++..+-..+..++.++++... ++.+++++.+. -.| .....-.|.-++.+
T Consensus 10 ~~~~~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~--~~p~~~Rd~lY~LAvg~yk 86 (126)
T 1nzn_A 10 ELVSVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK--GSKEEQRDYVFYLAVGNYR 86 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT--SCHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHH
Confidence 33344455566666766665553 666666667778888776655 88888888763 224 33444556777889
Q ss_pred cCCHHHHHHHHHhCC-CCCC
Q 046312 380 AGHLKEAYTFIMNMP-FQPN 398 (514)
Q Consensus 380 ~g~~~~A~~~~~~~~-~~p~ 398 (514)
.|++++|.+.++.+. ..|+
T Consensus 87 lg~Y~~A~~~~~~lL~~eP~ 106 (126)
T 1nzn_A 87 LKEYEKALKYVRGLLQTEPQ 106 (126)
T ss_dssp TTCHHHHHHHHHHHHHHCTT
T ss_pred hhhHHHHHHHHHHHHHhCCC
Confidence 999999999888875 5563
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=92.07 E-value=1.9 Score=30.70 Aligned_cols=88 Identities=8% Similarity=-0.008 Sum_probs=64.9
Q ss_pred CCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCHHHHHHHhhccCCCChhhHHHHHHHHHhCCChhHHHHHHHHHH
Q 046312 143 SGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKRDACKVFDDMCERSVVSWNVIITVCVENLWLGEAVGYFVKMK 222 (514)
Q Consensus 143 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 222 (514)
..-++|..+-+.+...+- ...+--.-+..+...|++++|..+.+..+-||...|-+|.. .+.|..+++..-+.++.
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLG 95 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 356778778777776652 22222233456788999999999999999999999988865 47888889888888887
Q ss_pred HCCCCCCHHHHHH
Q 046312 223 DLGFEPDETTMLV 235 (514)
Q Consensus 223 ~~~~~p~~~t~~~ 235 (514)
.+| .|....|..
T Consensus 96 ~sg-~p~~q~Fa~ 107 (115)
T 2uwj_G 96 GSS-DPALADFAA 107 (115)
T ss_dssp TCS-SHHHHHHHH
T ss_pred hCC-CHHHHHHHH
Confidence 776 565555543
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=91.91 E-value=2 Score=30.67 Aligned_cols=87 Identities=7% Similarity=-0.044 Sum_probs=63.6
Q ss_pred CCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCHHHHHHHhhccCCCChhhHHHHHHHHHhCCChhHHHHHHHHHH
Q 046312 143 SGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKRDACKVFDDMCERSVVSWNVIITVCVENLWLGEAVGYFVKMK 222 (514)
Q Consensus 143 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 222 (514)
..-++|..+-+.+...+- ...+--.-+..+...|++++|..+.+..+-||...|-+|.. .+.|..+++..-+.++.
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 96 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLA 96 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 356778788777776652 22222233455788999999999999999999999988865 47788888888887887
Q ss_pred HCCCCCCHHHHH
Q 046312 223 DLGFEPDETTML 234 (514)
Q Consensus 223 ~~~~~p~~~t~~ 234 (514)
..| .|....|.
T Consensus 97 ~sg-~p~~q~Fa 107 (116)
T 2p58_C 97 RSQ-DPRIQTFV 107 (116)
T ss_dssp TCC-CHHHHHHH
T ss_pred hCC-CHHHHHHH
Confidence 766 55555554
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.61 E-value=2 Score=34.23 Aligned_cols=112 Identities=11% Similarity=0.006 Sum_probs=62.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCc-----CCH-------HHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCH-HHH
Q 046312 269 TALIDMYAKCGAVGCARLLFSRMEE-----INV-------WTWSAMILGLAQHGYAEEALELFSNMKNSS-ISPNY-VTF 334 (514)
Q Consensus 269 ~~li~~~~~~g~~~~A~~~~~~~~~-----~~~-------~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~-~~~ 334 (514)
..-++.+...|.++.|+-+.+.+.. +++ .++..+..++...|++.+|...|++.+... .-+.. .+.
T Consensus 24 ~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~ 103 (167)
T 3ffl_A 24 IDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVR 103 (167)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-------
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 3445666777788777776665442 221 245556677777888888888887765421 11111 111
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 046312 335 LGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP 394 (514)
Q Consensus 335 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 394 (514)
..+ ........ . .....+.+.--.+..+|.+.|++++|+.+++.++
T Consensus 104 ~~~----~~~ss~p~---------s-~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 104 PST----GNSASTPQ---------S-QCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp ---------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred ccc----cccCCCcc---------c-ccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 100 00000000 0 1223444555557888999999999999999997
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=91.27 E-value=6.1 Score=35.43 Aligned_cols=169 Identities=12% Similarity=0.035 Sum_probs=93.9
Q ss_pred HHHHHHHHhcccCCCCChHHHHHHHcccCCCCCcccHHHHHHHHHhCCCchHHHH----HHHHHHHcCCCCCcchHHHHH
Q 046312 61 QILKELVRFCTLSSSKNLTYARSILCNYVNDSVPIPWNNLIRGYAWSDRPREAVW----VFIDMKRRGIKPTEFTYPFVL 136 (514)
Q Consensus 61 ~~~~~ll~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~----~~~~m~~~~~~p~~~~~~~ll 136 (514)
..|..+..-|. +.+++++|..++..-. ..+.+.|+...|-+ +.+...+.+++++......++
T Consensus 34 Q~~Rtl~~Ry~--~~~~~~eAidlL~~ga------------~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~ 99 (312)
T 2wpv_A 34 QTLRTIANRYV--RSKSYEHAIELISQGA------------LSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLV 99 (312)
T ss_dssp HHHHHHHHHHH--HTTCHHHHHHHHHHHH------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHH
T ss_pred HHHHHHHHHHH--HhcCHHHHHHHHHHHH------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 55666777777 7788888888765532 22344566555444 355556667788877777777
Q ss_pred HHHhccCCch-HHHHHHHHHH----HhCC--CCCcchHHHHHHHHHcCCCHHHHHHHhhccCCCChhhHHHHHHHHHhC-
Q 046312 137 KACAEISGLN-EGMQVQANVT----KSGL--DSDVYTNNNLVRFYGSCRRKRDACKVFDDMCERSVVSWNVIITVCVEN- 208 (514)
Q Consensus 137 ~~~~~~g~~~-~a~~~~~~~~----~~~~--~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~- 208 (514)
..+.....-+ .=.++++.++ +.|- .-++..+..+...|.+.|++.+|+..|-.-...|...+..++--+.+.
T Consensus 100 ~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~ 179 (312)
T 2wpv_A 100 RLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQV 179 (312)
T ss_dssp HHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhc
Confidence 7765533221 1233444443 2321 226677888888888999998888877422222344444444333332
Q ss_pred --CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 046312 209 --LWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIE 258 (514)
Q Consensus 209 --~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 258 (514)
|...++-- ..-..++ -|.-.|++..|..+++...+
T Consensus 180 ~~~~~~e~dl--------------f~~RaVL-~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 180 DDIEDSTVAE--------------FFSRLVF-NYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp TCCCHHHHHH--------------HHHHHHH-HHHHTTBHHHHHHHHHHHHH
T ss_pred CCCCcchHHH--------------HHHHHHH-HHHHhcCHHHHHHHHHHHHH
Confidence 32222211 1111122 23356777777777776543
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=90.25 E-value=8.5 Score=41.93 Aligned_cols=162 Identities=9% Similarity=-0.016 Sum_probs=81.1
Q ss_pred HHHHHHHcCCCHHHHHHHhhccCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHH
Q 046312 169 NLVRFYGSCRRKRDACKVFDDMCERSVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSL 248 (514)
Q Consensus 169 ~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~ 248 (514)
.++..+...+..+.+.++.... +.+...--.+..++...|++++|.+.|.+... |+..+.... ....
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~-~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~----------~~~~- 883 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL-NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQF----------AVLR- 883 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSC----------SSHH-
T ss_pred HHHHHHHHhhhHHHHHHHhhhc-cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhh----------hhhc-
Confidence 3444555556666665554433 33333334455667777777777777765421 111110000 0000
Q ss_pred HHHHHHHHHHhC--CCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCc----CC----HHHHHHHHHHHHHcCChHHHHHH
Q 046312 249 GKWVHLQLIERG--TVLNCQLGTALIDMYAKCGAVGCARLLFSRMEE----IN----VWTWSAMILGLAQHGYAEEALEL 318 (514)
Q Consensus 249 a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~----~~~~~~li~~~~~~~~~~~a~~~ 318 (514)
-+..+.... ...-..-|..++..+.+.|.++.+.++-....+ .+ ...|..++.++...|++++|...
T Consensus 884 ---~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~a 960 (1139)
T 4fhn_B 884 ---EFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVA 960 (1139)
T ss_dssp ---HHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHH
T ss_pred ---ccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHH
Confidence 001111111 111223455666666666666666555443321 11 12577777888888888888877
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccCcHH
Q 046312 319 FSNMKNSSISPNYVTFLGVLCACNHAGMVE 348 (514)
Q Consensus 319 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 348 (514)
+-.+-....+ ...+..|+...|..|..+
T Consensus 961 L~~~pd~~~r--~~cLr~LV~~lce~~~~~ 988 (1139)
T 4fhn_B 961 LMVLSTTPLK--KSCLLDFVNQLTKQGKIN 988 (1139)
T ss_dssp HHHHHHSSSC--HHHHHHHHHHHHHHCCHH
T ss_pred HHhCCCHHHH--HHHHHHHHHHHHhCCChh
Confidence 7766554322 344556666666555543
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=90.21 E-value=1.8 Score=30.99 Aligned_cols=64 Identities=14% Similarity=0.120 Sum_probs=51.1
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHH
Q 046312 311 YAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADI 376 (514)
Q Consensus 311 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 376 (514)
+.-++.+-++.+....+.|++....+.+.+|-+.+++..|.++++.++.+. .+...+|..+++-
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~--~~~~~iY~~~lqE 88 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQE 88 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh--cCchhhHHHHHHH
Confidence 344666777777777899999999999999999999999999999999864 3345567777643
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=89.68 E-value=1.2 Score=34.83 Aligned_cols=103 Identities=10% Similarity=0.071 Sum_probs=63.6
Q ss_pred CCHHHHHHHHHHHhccCcH------HHHHHHHHHHHHhhCCCCchH-HHHHHHHH------HHhcCCHHHHHHHHHhCC-
Q 046312 329 PNYVTFLGVLCACNHAGMV------EDGYRYFHEMEHVHGIKPMRI-HYHTMADI------LARAGHLKEAYTFIMNMP- 394 (514)
Q Consensus 329 p~~~~~~~ll~~~~~~~~~------~~a~~~~~~~~~~~~~~p~~~-~~~~li~~------~~~~g~~~~A~~~~~~~~- 394 (514)
-|..+|...+....+.|+. ++.+++|++... .++|+.. .|...|.. +...++.++|.++|+.+.
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia--~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE--ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH--HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH--cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3566777777777777887 777888888776 5566532 12222221 123467777777777663
Q ss_pred -CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCC
Q 046312 395 -FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGS 436 (514)
Q Consensus 395 -~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 436 (514)
.+-=...|-....--.++|+ ++.|.+++..++.+.|.+.
T Consensus 89 ~hKkFAKiwi~~AqFEiRqgn---l~kARkILg~AiG~~~k~~ 128 (161)
T 4h7y_A 89 NCKKFAFVHISFAQFELSQGN---VKKSKQLLQKAVERGAVPL 128 (161)
T ss_dssp HCTTBHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTTCBCH
T ss_pred HhHHHHHHHHHHHHHHHHccc---HHHHHHHHHHHhccCCCcH
Confidence 11115556555566667777 7777777777777776643
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=89.35 E-value=8.2 Score=42.05 Aligned_cols=120 Identities=12% Similarity=0.004 Sum_probs=74.9
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCc--------------------------CCHHHHHHHHHHHHHcCChHHHHH
Q 046312 264 NCQLGTALIDMYAKCGAVGCARLLFSRMEE--------------------------INVWTWSAMILGLAQHGYAEEALE 317 (514)
Q Consensus 264 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------------------------~~~~~~~~li~~~~~~~~~~~a~~ 317 (514)
+....-.+..+|...|++++|.+.|.+... .-..-|..++..+.+.+.++.+.+
T Consensus 841 ~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~ 920 (1139)
T 4fhn_B 841 DPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALE 920 (1139)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHH
T ss_pred CcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHH
Confidence 344445566777888888888888876531 011235667777777788888877
Q ss_pred HHHHHHHCCCCCCH----HHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHH
Q 046312 318 LFSNMKNSSISPNY----VTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEA 386 (514)
Q Consensus 318 ~~~~m~~~g~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 386 (514)
+-+..++....-+. ..|..+..++...|++++|...+-.+... .--......|+..++..|..++-
T Consensus 921 fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~---~~r~~cLr~LV~~lce~~~~~~L 990 (1139)
T 4fhn_B 921 FSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT---PLKKSCLLDFVNQLTKQGKINQL 990 (1139)
T ss_dssp HHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS---SSCHHHHHHHHHHHHHHCCHHHH
T ss_pred HHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH---HHHHHHHHHHHHHHHhCCChhhh
Confidence 77766653211111 13666777777888888887777666543 23345566676666666655443
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.56 E-value=17 Score=34.59 Aligned_cols=181 Identities=9% Similarity=0.021 Sum_probs=90.7
Q ss_pred CCHHHHHHHhhccC-----C----CChhhHHHHHHHHHhCCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHHH----hcc
Q 046312 178 RRKRDACKVFDDMC-----E----RSVVSWNVIITVCVENLWLGEAVGYFVKMKDL-GFEPDETTMLVVLSAC----TEL 243 (514)
Q Consensus 178 ~~~~~A~~~~~~~~-----~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~t~~~ll~~~----~~~ 243 (514)
|+++.|.+.+-.+. . ........++..|...|+|+...+.+..+... |..+.. ...++..+ ...
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~a--i~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLS--IQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHH--HHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHHHHhcC
Confidence 56777766654431 1 23345666777788888888777766655443 322222 22233222 222
Q ss_pred CChHHHHH--HHHHHHH--hC-CCC---chhHHHHHHHHHHhcCCHHHHHHHHHhcCc-----C----CHHHHHHHHHHH
Q 046312 244 GNLSLGKW--VHLQLIE--RG-TVL---NCQLGTALIDMYAKCGAVGCARLLFSRMEE-----I----NVWTWSAMILGL 306 (514)
Q Consensus 244 g~~~~a~~--~~~~~~~--~~-~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~----~~~~~~~li~~~ 306 (514)
...+.... +.+.+.. .| +.. .......|...|...|++.+|.+++..+.. . -+..+..-++.|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 22222111 1110000 01 111 122334566667777777777777766542 1 134555566667
Q ss_pred HHcCChHHHHHHHHHHHH----CCCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHHHHh
Q 046312 307 AQHGYAEEALELFSNMKN----SSISPN--YVTFLGVLCACNHAGMVEDGYRYFHEMEHV 360 (514)
Q Consensus 307 ~~~~~~~~a~~~~~~m~~----~g~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 360 (514)
...+++.+|..+++++.. ....|+ ...+...+..+...+++.+|.+.|.++...
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 777777777777766532 111222 122444455555666676666666666553
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=87.46 E-value=6.5 Score=40.16 Aligned_cols=53 Identities=13% Similarity=0.002 Sum_probs=41.5
Q ss_pred HHHhccCcHHHHHHHHHHHHHhhCCCCc-hHHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 046312 339 CACNHAGMVEDGYRYFHEMEHVHGIKPM-RIHYHTMADILARAGHLKEAYTFIMNMP 394 (514)
Q Consensus 339 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~ 394 (514)
..|...|+++.|+.+-++.... .|+ -.+|..|..+|.+.|+++.|+-.++.++
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~---aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTEL---ALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH---CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHhccCcHHHHHHHHHHHHhc---CchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 3455678888888888888753 555 7788888888888888888888888875
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=86.51 E-value=3.7 Score=31.20 Aligned_cols=63 Identities=14% Similarity=0.137 Sum_probs=50.5
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHH
Q 046312 312 AEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADI 376 (514)
Q Consensus 312 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 376 (514)
.-+..+-++.+....+.|++......+.+|-+.+++..|.++|+.++.+. .+....|..+++-
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~--~~~~~iY~y~lqE 131 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQE 131 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc--CCchhhHHHHHHH
Confidence 34566666777777899999999999999999999999999999999854 4446678777643
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=85.97 E-value=2.2 Score=40.06 Aligned_cols=67 Identities=12% Similarity=-0.025 Sum_probs=48.4
Q ss_pred HHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCCce
Q 046312 404 ALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKN-----VGLKKMKGM 473 (514)
Q Consensus 404 ~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~~~ 473 (514)
.++..+...|+ .+.+...+..+...+|-+...+..++.+|.+.|+..+|.+.|++.++ .|+.|.+.+
T Consensus 176 ~~~~~~l~~g~---~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 176 AKAEAEIACGR---ASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHTTC---HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHCCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 34556667777 77777777777777787777788888888888888888888777653 476665544
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=85.89 E-value=6.2 Score=36.92 Aligned_cols=67 Identities=7% Similarity=-0.158 Sum_probs=39.0
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHH-----hCCCCchhH
Q 046312 200 VIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIE-----RGTVLNCQL 267 (514)
Q Consensus 200 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~ 267 (514)
.++..+...|++++++..+..+.... +.+...+..+|.++.+.|+..+|.+.|+.+.+ .|+.|+..+
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 34455556666666666666655442 34555666666666666666666666665433 366665544
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=85.21 E-value=8.3 Score=27.49 Aligned_cols=86 Identities=15% Similarity=0.036 Sum_probs=58.5
Q ss_pred ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 046312 245 NLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEEINVWTWSAMILGLAQHGYAEEALELFSNMKN 324 (514)
Q Consensus 245 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 324 (514)
..++|.-|-+.+...+. ...+--.-+..+...|++++|..+.+...-||...|-+|-. .+.|-.+++...+.++..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 45666666666666553 33333344556778889999998888888888888877644 477888888888877777
Q ss_pred CCCCCCHHHHH
Q 046312 325 SSISPNYVTFL 335 (514)
Q Consensus 325 ~g~~p~~~~~~ 335 (514)
+| .|....|.
T Consensus 97 sg-~p~~q~Fa 106 (115)
T 2uwj_G 97 SS-DPALADFA 106 (115)
T ss_dssp CS-SHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 65 45544443
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=85.19 E-value=5.1 Score=28.74 Aligned_cols=60 Identities=12% Similarity=0.169 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 046312 213 EAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALID 273 (514)
Q Consensus 213 ~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 273 (514)
++.+-++.+....+.|+.......+++|.+.+++..|.++++.++.+--. ...+|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~-~~~iY~~~lq 87 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGP-HKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT-CTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC-chhhHHHHHH
Confidence 44555556666667777777777777777777777777777777655322 2345555443
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=84.74 E-value=8.8 Score=27.41 Aligned_cols=86 Identities=13% Similarity=0.118 Sum_probs=58.1
Q ss_pred ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 046312 245 NLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEEINVWTWSAMILGLAQHGYAEEALELFSNMKN 324 (514)
Q Consensus 245 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 324 (514)
..++|.-|-+.+...+. ...+--.-+..+...|++++|..+.+...-||...|-+|-. .+.|-.+++...+.++..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 45666666666666553 33333344556778889999999988888888888877654 466777788777777776
Q ss_pred CCCCCCHHHHH
Q 046312 325 SSISPNYVTFL 335 (514)
Q Consensus 325 ~g~~p~~~~~~ 335 (514)
+| .|....|.
T Consensus 98 sg-~p~~q~Fa 107 (116)
T 2p58_C 98 SQ-DPRIQTFV 107 (116)
T ss_dssp CC-CHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 65 45544443
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=83.55 E-value=22 Score=30.95 Aligned_cols=54 Identities=15% Similarity=0.063 Sum_probs=33.5
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 046312 305 GLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEH 359 (514)
Q Consensus 305 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 359 (514)
...+.|+.++++.....-++.. +-|...-..+++.+|-.|++++|.+-++...+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~ 59 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK 59 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3455667777776666666542 33444455566667777777777766666654
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=80.72 E-value=60 Score=34.11 Aligned_cols=25 Identities=8% Similarity=0.048 Sum_probs=15.0
Q ss_pred HHHHHHhcccCCCCChHHHHHHHcccC
Q 046312 63 LKELVRFCTLSSSKNLTYARSILCNYV 89 (514)
Q Consensus 63 ~~~ll~~~~~~~~g~~~~A~~~~~~~~ 89 (514)
|...++... +.++.+.+.++|....
T Consensus 233 y~~a~~~ai--~LnD~~li~~if~~l~ 257 (963)
T 4ady_A 233 YLTLNKVVV--NLNDAGLALQLFKKLK 257 (963)
T ss_dssp HHHHHHHHH--HHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHH--HcCCHHHHHHHHHHHH
Confidence 333444444 5677777777777753
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=80.45 E-value=33 Score=30.99 Aligned_cols=167 Identities=13% Similarity=0.078 Sum_probs=93.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCChHHHHHHH----HHHHHCCCCCCHHHHHHHHHHHh
Q 046312 267 LGTALIDMYAKCGAVGCARLLFSRMEEINVWTWSAMILGLAQHGYAEEALELF----SNMKNSSISPNYVTFLGVLCACN 342 (514)
Q Consensus 267 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~----~~m~~~g~~p~~~~~~~ll~~~~ 342 (514)
+|.++..=|.+.+++++|++++..- ...+.+.|+...|.++- +-..+.++++|......++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 3445555567777777777664431 22344556555544443 33344567777776666666655
Q ss_pred ccCc--HHHHHHHHHHHHH---hhC--CCCchHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCC
Q 046312 343 HAGM--VEDGYRYFHEMEH---VHG--IKPMRIHYHTMADILARAGHLKEAYTFIMNMPFQPNPIVLRALLSASSIHDAK 415 (514)
Q Consensus 343 ~~~~--~~~a~~~~~~~~~---~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 415 (514)
.... .+. ..+++++.+ ++| -.-+...-..+...|.+.|++.+|..-|-- ...+....+..++.-+...+.
T Consensus 106 ~~~~~~p~r-~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~il-g~~~s~~~~a~mL~ew~~~~~- 182 (336)
T 3lpz_A 106 LFQPGEPVR-KRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVL-GTKESPEVLARMEYEWYKQDE- 182 (336)
T ss_dssp TSCTTCHHH-HHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTT-SCTTHHHHHHHHHHHHHHTSC-
T ss_pred hCCCCCcHH-HHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHh-cCCchHHHHHHHHHHHHHhcC-
Confidence 4432 111 122222221 123 234566777888899999999999888742 223334566555544433322
Q ss_pred CcchHHHHHHHHHHhcCCCCCchHH-HHHHHHHhcCCHHHHHHHHHHHHh
Q 046312 416 YQDGVGNEVRRRLLELEPRGSQNLV-IVANKYAEVGMWEKVSNVRRFMKN 464 (514)
Q Consensus 416 ~~~~~a~~~~~~~~~~~p~~~~~~~-~l~~~~~~~g~~~~A~~~~~~m~~ 464 (514)
|.+.+.|. ..+--|.-.|+...|..+++....
T Consensus 183 -----------------~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 183 -----------------SHTAPLYCARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp -----------------GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -----------------CccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 23333333 445556677899999888777654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 514 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.92 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.9 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.58 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.56 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.22 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.1 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.03 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.01 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.0 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.0 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.99 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.97 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.94 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.79 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.73 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.5 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.49 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.47 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.44 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.4 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.39 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.36 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.35 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.32 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.26 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.17 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.14 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.14 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.1 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.05 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.02 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.91 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.88 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.86 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.85 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.83 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.8 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.79 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.75 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.69 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.68 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.6 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.47 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.44 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.42 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.39 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.27 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.2 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.2 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.18 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 97.1 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.03 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 96.98 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.78 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.58 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 95.9 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 95.62 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 95.14 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 94.96 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 94.83 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 94.34 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 89.87 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 83.6 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 82.74 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=1.5e-21 Score=185.63 Aligned_cols=368 Identities=10% Similarity=-0.016 Sum_probs=296.5
Q ss_pred CCCChHHHHHHHcccCC--CCCcccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCCchHHHHH
Q 046312 74 SSKNLTYARSILCNYVN--DSVPIPWNNLIRGYAWSDRPREAVWVFIDMKRRGIKPTEFTYPFVLKACAEISGLNEGMQV 151 (514)
Q Consensus 74 ~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 151 (514)
+.|++++|...++++.. +.++.++..+...+.+.|++++|+..|++..+.. +-+..+|..+..++...|++++|...
T Consensus 11 ~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~~~A~~~ 89 (388)
T d1w3ba_ 11 QAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEH 89 (388)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhccccccccc
Confidence 68999999999988742 3456778888889999999999999999988753 33456788888999999999999999
Q ss_pred HHHHHHhCCCCCcchHHHHHHHHHcCCCHHHHHHHhhcc---CCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC
Q 046312 152 QANVTKSGLDSDVYTNNNLVRFYGSCRRKRDACKVFDDM---CERSVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEP 228 (514)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 228 (514)
+....+.. +.+..............+....+....... ..................+....+...+.+..... +-
T Consensus 90 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 167 (388)
T d1w3ba_ 90 YRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PN 167 (388)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TT
T ss_pred cccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhccC-cc
Confidence 99988875 334444444444455555554444443333 33455556666677778888888888888877653 34
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCc---CCHHHHHHHHHH
Q 046312 229 DETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEE---INVWTWSAMILG 305 (514)
Q Consensus 229 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 305 (514)
+...+..+...+...|+++.|...++...+... -+...+..+...+...|++++|...+++..+ .+...+..+...
T Consensus 168 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 246 (388)
T d1w3ba_ 168 FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACV 246 (388)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhHHHHhhcccccccCcHHHHHHHHHHHHHhCc-ccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHH
Confidence 567778888889999999999999999988763 3577888899999999999999999988764 566788888999
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHH
Q 046312 306 LAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKE 385 (514)
Q Consensus 306 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 385 (514)
+.+.|++++|...|++..+.. +-+..++..+..++...|++++|...++..... .+.+...+..+...+.+.|++++
T Consensus 247 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~ 323 (388)
T d1w3ba_ 247 YYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEE 323 (388)
T ss_dssp HHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc--CCccchhhhHHHHHHHHCCCHHH
Confidence 999999999999999998853 234677888889999999999999999998874 35567788889999999999999
Q ss_pred HHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCC
Q 046312 386 AYTFIMNMP-FQP-NPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGM 451 (514)
Q Consensus 386 A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 451 (514)
|.+.|++.. ..| +..++..+...+...|+ +++|.+.++++.+++|+++.+|..++.+|.+.|+
T Consensus 324 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 324 AVRLYRKALEVFPEFAAAHSNLASVLQQQGK---LQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHTTSCTTCHHHHHHHHHHHHTTTC---CHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 999999875 555 46788889999999999 9999999999999999999999999999998875
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=2.4e-20 Score=177.18 Aligned_cols=356 Identities=13% Similarity=0.043 Sum_probs=296.0
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCC
Q 046312 100 LIRGYAWSDRPREAVWVFIDMKRRGIKPTEFTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRR 179 (514)
Q Consensus 100 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 179 (514)
+...+.+.|++++|++.|+++.+.. +-+...+..+..++...|++++|...++++++.. +-+..++..+..+|.+.|+
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~ 82 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhcc
Confidence 3456778899999999999998762 3355678888899999999999999999999885 4467789999999999999
Q ss_pred HHHHHHHhhcc---CCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHH
Q 046312 180 KRDACKVFDDM---CERSVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQL 256 (514)
Q Consensus 180 ~~~A~~~~~~~---~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~ 256 (514)
+++|...+... ...+...+..........+....+........... .................+....+...+...
T Consensus 83 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (388)
T d1w3ba_ 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccchhhhhHHHHHHh
Confidence 99999999888 33445555556666666677777777766666554 334445555666667788888888888887
Q ss_pred HHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCc---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH
Q 046312 257 IERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEE---INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVT 333 (514)
Q Consensus 257 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 333 (514)
..... .+...+..+...+...|++++|...+++..+ .+...|..+...+...|++++|...+++....+ ..+...
T Consensus 162 ~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 239 (388)
T d1w3ba_ 162 IETQP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVV 239 (388)
T ss_dssp HHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHH
T ss_pred hccCc-chhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHH
Confidence 77653 3567788889999999999999999998764 456788999999999999999999999998854 445667
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCc-hHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHH
Q 046312 334 FLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPM-RIHYHTMADILARAGHLKEAYTFIMNMP--FQPNPIVLRALLSASS 410 (514)
Q Consensus 334 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~ 410 (514)
+..+..++.+.|++++|...|+++.+. .|+ ...+..+...+...|++++|.+.++... .+.+...+..+...+.
T Consensus 240 ~~~l~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 316 (388)
T d1w3ba_ 240 HGNLACVYYEQGLIDLAIDTYRRAIEL---QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKR 316 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHT---CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHH
Confidence 788889999999999999999999864 444 6788899999999999999999998875 5567888999999999
Q ss_pred hcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 046312 411 IHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNVG 466 (514)
Q Consensus 411 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 466 (514)
..|+ +++|.+.++++.+..|+++.++..++.+|.+.|++++|.+.+++..+..
T Consensus 317 ~~~~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 369 (388)
T d1w3ba_ 317 EQGN---IEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS 369 (388)
T ss_dssp TTTC---HHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC
T ss_pred HCCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999 9999999999999999999999999999999999999999999987653
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=2e-13 Score=125.69 Aligned_cols=241 Identities=11% Similarity=-0.052 Sum_probs=165.3
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 046312 200 VIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCG 279 (514)
Q Consensus 200 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 279 (514)
.....+.+.|++++|+..|+++.+.. +-+..+|..+..++...|+++.|...+....+.... +...+..+..+|...|
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD-NQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccc-cccccccccccccccc
Confidence 34556778888888888888887763 334667777777777888888888888777776532 4556666666667777
Q ss_pred CHHHHHHHHHhcCcCCHH--H-HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 046312 280 AVGCARLLFSRMEEINVW--T-WSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHE 356 (514)
Q Consensus 280 ~~~~A~~~~~~~~~~~~~--~-~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 356 (514)
++++|.+.++.....+.. . +....... ...+.......+..+...+...++...+.+
T Consensus 102 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 161 (323)
T d1fcha_ 102 LQRQACEILRDWLRYTPAYAHLVTPAEEGA--------------------GGAGLGPSKRILGSLLSDSLFLEVKELFLA 161 (323)
T ss_dssp CHHHHHHHHHHHHHTSTTTGGGCC-----------------------------------CTTHHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhHHHhccchHHHHHhhhhhh--------------------hhcccccchhhHHHHHHhhHHHHHHHHHHH
Confidence 777776666655431110 0 00000000 000000111112223344667778888887
Q ss_pred HHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCC
Q 046312 357 MEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP-FQP-NPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPR 434 (514)
Q Consensus 357 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~ 434 (514)
......-.++...+..+...+...|++++|...|++.. ..| +...|..+...+...|+ +++|.+.++++.+++|+
T Consensus 162 al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~p~ 238 (323)
T d1fcha_ 162 AVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQ---SEEAVAAYRRALELQPG 238 (323)
T ss_dssp HHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTT
T ss_pred HHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhccccccc---chhHHHHHHHHHHHhhc
Confidence 77653334456677888888899999999999998875 333 57788888899999999 99999999999999999
Q ss_pred CCchHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 046312 435 GSQNLVIVANKYAEVGMWEKVSNVRRFMKNV 465 (514)
Q Consensus 435 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 465 (514)
++.++..++.+|.+.|++++|.+.|++..+.
T Consensus 239 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 269 (323)
T d1fcha_ 239 YIRSRYNLGISCINLGAHREAVEHFLEALNM 269 (323)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999988753
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=5.1e-13 Score=122.86 Aligned_cols=267 Identities=13% Similarity=0.037 Sum_probs=192.8
Q ss_pred HHHHHHHHcCCCHHHHHHHhhccC---CCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 046312 168 NNLVRFYGSCRRKRDACKVFDDMC---ERSVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELG 244 (514)
Q Consensus 168 ~~li~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g 244 (514)
-.....+.+.|++++|...|+++. +.+..+|..+..++...|++++|...|.+..+.. +-+...+..+..++...|
T Consensus 23 ~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 23 FEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccc
Confidence 346677899999999999999983 3357789999999999999999999999998864 335678888899999999
Q ss_pred ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 046312 245 NLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEEINVWTWSAMILGLAQHGYAEEALELFSNMKN 324 (514)
Q Consensus 245 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 324 (514)
++++|...++.+........ ........... ..+.......+..+...+.+.+|...+.+..+
T Consensus 102 ~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~ 164 (323)
T d1fcha_ 102 LQRQACEILRDWLRYTPAYA-HLVTPAEEGAG----------------GAGLGPSKRILGSLLSDSLFLEVKELFLAAVR 164 (323)
T ss_dssp CHHHHHHHHHHHHHTSTTTG-GGCC-------------------------------CTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhHHHhccchH-HHHHhhhhhhh----------------hcccccchhhHHHHHHhhHHHHHHHHHHHHHH
Confidence 99999999999887643211 11000000000 00111111122334455667788888888776
Q ss_pred CC-CCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCc-hHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHH
Q 046312 325 SS-ISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPM-RIHYHTMADILARAGHLKEAYTFIMNMP-FQP-NPI 400 (514)
Q Consensus 325 ~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~ 400 (514)
.. -.++...+..+...+...|++++|...+++.... .|+ ...|..+...|.+.|++++|.+.|+++. ..| +..
T Consensus 165 ~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 241 (323)
T d1fcha_ 165 LDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV---RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIR 241 (323)
T ss_dssp HSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HhhcccccccchhhHHHHHHHHHHhhhhccccccccc---ccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHH
Confidence 32 2345667777888888999999999999998864 344 6778888999999999999999998875 444 577
Q ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCch-----------HHHHHHHHHhcCCHHHHHHH
Q 046312 401 VLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQN-----------LVIVANKYAEVGMWEKVSNV 458 (514)
Q Consensus 401 ~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~-----------~~~l~~~~~~~g~~~~A~~~ 458 (514)
.+..+...|...|+ +++|.+.+++++++.|++..+ +..+..++...|+.+.+...
T Consensus 242 a~~~lg~~~~~~g~---~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~~ 307 (323)
T d1fcha_ 242 SRYNLGISCINLGA---HREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA 307 (323)
T ss_dssp HHHHHHHHHHHHTC---HHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HHHHHHHHHHHCCC---HHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 88889999999999 999999999999988876543 34566677667776555433
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.22 E-value=4.8e-09 Score=96.67 Aligned_cols=260 Identities=10% Similarity=-0.075 Sum_probs=165.9
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHhccCChHHHHHHHHHHHHhCCC-----CchhHHHHHH
Q 046312 202 ITVCVENLWLGEAVGYFVKMKDLGFEPD----ETTMLVVLSACTELGNLSLGKWVHLQLIERGTV-----LNCQLGTALI 272 (514)
Q Consensus 202 i~~~~~~~~~~~a~~~~~~m~~~~~~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~~~~~li 272 (514)
...+...|++++|+.++++..+.....+ ...+..+..++...|++++|...+++..+.... .....+..+.
T Consensus 19 A~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 98 (366)
T d1hz4a_ 19 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 98 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 3445566677777777666655421111 124445556666667777777776666543211 1123445556
Q ss_pred HHHHhcCCHHHHHHHHHhcCc-------C----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC----CCCCHHHHHHH
Q 046312 273 DMYAKCGAVGCARLLFSRMEE-------I----NVWTWSAMILGLAQHGYAEEALELFSNMKNSS----ISPNYVTFLGV 337 (514)
Q Consensus 273 ~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g----~~p~~~~~~~l 337 (514)
..+...|++..+...+..... + ....+..+...+...|+++.+...+....... ......++...
T Consensus 99 ~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (366)
T d1hz4a_ 99 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 178 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHH
Confidence 667777777777776665432 1 12345556677788888888888888877632 12223445555
Q ss_pred HHHHhccCcHHHHHHHHHHHHHhhCCCCc-----hHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-----CHHHHHHHH
Q 046312 338 LCACNHAGMVEDGYRYFHEMEHVHGIKPM-----RIHYHTMADILARAGHLKEAYTFIMNMP-FQP-----NPIVLRALL 406 (514)
Q Consensus 338 l~~~~~~~~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-----~~~~~~~l~ 406 (514)
...+...++...+...+.+......-..+ ...+..+...+...|++++|...+++.. ..| ....+..+.
T Consensus 179 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la 258 (366)
T d1hz4a_ 179 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA 258 (366)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 56677778888888877766653221111 2345556667788899999999988875 211 235566677
Q ss_pred HHHHhcCCCCcchHHHHHHHHHHhcC------CCCCchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 046312 407 SASSIHDAKYQDGVGNEVRRRLLELE------PRGSQNLVIVANKYAEVGMWEKVSNVRRFMKN 464 (514)
Q Consensus 407 ~~~~~~~~~~~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 464 (514)
..+...|+ ++.|...++.+.... |....++..++.+|.+.|++++|.+.+++...
T Consensus 259 ~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 259 RAQILLGE---FEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHHTTC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHcCC---HHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 88888898 888888888876432 33445677899999999999999999988654
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.10 E-value=1.5e-08 Score=93.14 Aligned_cols=158 Identities=13% Similarity=0.042 Sum_probs=82.4
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhCCC----CchhHHHHHHHHHHhcCCHHHHHHHHHhcCc-------C---CHHHHHH
Q 046312 236 VLSACTELGNLSLGKWVHLQLIERGTV----LNCQLGTALIDMYAKCGAVGCARLLFSRMEE-------I---NVWTWSA 301 (514)
Q Consensus 236 ll~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~---~~~~~~~ 301 (514)
+...+...|+++.+...+......... .....+......+...++...+...+..... . ....+..
T Consensus 139 la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~ 218 (366)
T d1hz4a_ 139 RAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKV 218 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHH
T ss_pred HHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHH
Confidence 344445555555555555554443211 1122333344445555555555544443321 0 1223444
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhccCcHHHHHHHHHHHHHh---hCCCCc-hHHHHHHH
Q 046312 302 MILGLAQHGYAEEALELFSNMKNSSISPN---YVTFLGVLCACNHAGMVEDGYRYFHEMEHV---HGIKPM-RIHYHTMA 374 (514)
Q Consensus 302 li~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~p~-~~~~~~li 374 (514)
+...+...|++++|...+++........+ ...+..+..++...|++++|...++.+... .+..|+ ...+..+.
T Consensus 219 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 298 (366)
T d1hz4a_ 219 RVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLN 298 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHH
Confidence 55556667777777777766554322111 233444556667777777777777665432 123333 34556666
Q ss_pred HHHHhcCCHHHHHHHHHhC
Q 046312 375 DILARAGHLKEAYTFIMNM 393 (514)
Q Consensus 375 ~~~~~~g~~~~A~~~~~~~ 393 (514)
..|.+.|++++|.+.+++.
T Consensus 299 ~~~~~~g~~~~A~~~l~~A 317 (366)
T d1hz4a_ 299 QLYWQAGRKSDAQRVLLDA 317 (366)
T ss_dssp HHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHH
Confidence 7777777777777777654
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.03 E-value=1.6e-08 Score=91.61 Aligned_cols=211 Identities=13% Similarity=0.126 Sum_probs=103.8
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC-ChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 046312 196 VSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELG-NLSLGKWVHLQLIERGTVLNCQLGTALIDM 274 (514)
Q Consensus 196 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 274 (514)
.+|+.+...+.+.+.+++|++.++++++.. +-+...|+....++...| ++++|...++.+++.... +.
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~-~~--------- 112 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NY--------- 112 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CH---------
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh-hh---------
Confidence 345555555666666666666666666642 223344455555554443 355555555555554422 34
Q ss_pred HHhcCCHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 046312 275 YAKCGAVGCARLLFSRMEEINVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYF 354 (514)
Q Consensus 275 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 354 (514)
.+|..+...+.+.|++++|+..++++++.. +-+...|..+...+...|++++|...+
T Consensus 113 ----------------------~a~~~~~~~~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~ 169 (315)
T d2h6fa1 113 ----------------------QVWHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYV 169 (315)
T ss_dssp ----------------------HHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHH
T ss_pred ----------------------hHHHHHhHHHHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHH
Confidence 444444444455555555555555555421 222444444555555555555555555
Q ss_pred HHHHHhhCCCC-chHHHHHHHHHHHhcCC------HHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCCCcchHHHHHH
Q 046312 355 HEMEHVHGIKP-MRIHYHTMADILARAGH------LKEAYTFIMNMP-FQP-NPIVLRALLSASSIHDAKYQDGVGNEVR 425 (514)
Q Consensus 355 ~~~~~~~~~~p-~~~~~~~li~~~~~~g~------~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~~~~a~~~~ 425 (514)
+++.+. .| +...|+.+...+.+.|. +++|++.+.++. ..| +...|..+...+ .... .+.+.+.+
T Consensus 170 ~~al~~---~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll-~~~~---~~~~~~~~ 242 (315)
T d2h6fa1 170 DQLLKE---DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGIL-QDRG---LSKYPNLL 242 (315)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH-TTTC---GGGCHHHH
T ss_pred HHHHHH---CCccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHH-HhcC---hHHHHHHH
Confidence 555543 22 23344444433333333 345555555543 233 344444443332 2333 45566666
Q ss_pred HHHHhcCCCCCch--HHHHHHHHH
Q 046312 426 RRLLELEPRGSQN--LVIVANKYA 447 (514)
Q Consensus 426 ~~~~~~~p~~~~~--~~~l~~~~~ 447 (514)
+.+.++.|+.... +..++.+|.
T Consensus 243 ~~~~~l~~~~~~~~~~~~l~~~y~ 266 (315)
T d2h6fa1 243 NQLLDLQPSHSSPYLIAFLVDIYE 266 (315)
T ss_dssp HHHHHHTTTCCCHHHHHHHHHHHH
T ss_pred HHHHHhCCCcCCHHHHHHHHHHHH
Confidence 6666666654333 334555554
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.01 E-value=4.3e-08 Score=88.46 Aligned_cols=164 Identities=9% Similarity=-0.011 Sum_probs=67.1
Q ss_pred hhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 046312 195 VVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDM 274 (514)
Q Consensus 195 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 274 (514)
...|...+....+.|+++.|..+|+++.+.........|...+..+.+.|+++.|..+|+.+.+.+.. +...+......
T Consensus 99 ~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~-~~~~~~~~a~~ 177 (308)
T d2onda1 99 MLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALM 177 (308)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-cHHHHHHHHHH
Confidence 33444444445555555555555555544321112223444444444455555555555554443321 11222211111
Q ss_pred -HHhcCCHHHHHHHHHhcCc---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHhccCcH
Q 046312 275 -YAKCGAVGCARLLFSRMEE---INVWTWSAMILGLAQHGYAEEALELFSNMKNSS-ISPN--YVTFLGVLCACNHAGMV 347 (514)
Q Consensus 275 -~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~--~~~~~~ll~~~~~~~~~ 347 (514)
+...|+.+.|..+|+.+.+ .+...|...+..+.+.|+.+.|..+|++..... ..|+ ...|...+..-...|+.
T Consensus 178 e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~ 257 (308)
T d2onda1 178 EYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDL 257 (308)
T ss_dssp HHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCH
T ss_pred HHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCH
Confidence 1223344444444444432 223344444444444444444444444444321 1221 12333333333344444
Q ss_pred HHHHHHHHHHHH
Q 046312 348 EDGYRYFHEMEH 359 (514)
Q Consensus 348 ~~a~~~~~~~~~ 359 (514)
+.+..+++++.+
T Consensus 258 ~~~~~~~~r~~~ 269 (308)
T d2onda1 258 ASILKVEKRRFT 269 (308)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.00 E-value=4e-08 Score=88.70 Aligned_cols=186 Identities=8% Similarity=-0.040 Sum_probs=123.2
Q ss_pred ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCc--C-C-HHHHHHHHHHHHHcCChHHHHHHHH
Q 046312 245 NLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEE--I-N-VWTWSAMILGLAQHGYAEEALELFS 320 (514)
Q Consensus 245 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~-~~~~~~li~~~~~~~~~~~a~~~~~ 320 (514)
..+.+..+++..++...+.+...+...+..+.+.|+++.|..+|+++.+ | + ...|...+..+.+.|+.+.|.++|.
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 3466677777776654444566677777777778888888888877654 2 2 3467777777777888888888888
Q ss_pred HHHHCCCCCCHHHHHHHHH-HHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC----C
Q 046312 321 NMKNSSISPNYVTFLGVLC-ACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP----F 395 (514)
Q Consensus 321 ~m~~~g~~p~~~~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~ 395 (514)
++++.+.. +...|..... -+...|+.+.|..+|+.+...+ +.+...|..+++.+.+.|+.++|..+|++.. .
T Consensus 159 ~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~--p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~ 235 (308)
T d2onda1 159 KAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 235 (308)
T ss_dssp HHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred HHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh--hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence 87765422 2233322222 2334577788888888877642 3345677777777778888888888887753 2
Q ss_pred CCC--HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCC
Q 046312 396 QPN--PIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGS 436 (514)
Q Consensus 396 ~p~--~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 436 (514)
.|+ ...|...+.--..+|+ .+.+..+.+++.+..|...
T Consensus 236 ~~~~~~~iw~~~~~fE~~~G~---~~~~~~~~~r~~~~~~~~~ 275 (308)
T d2onda1 236 PPEKSGEIWARFLAFESNIGD---LASILKVEKRRFTAFREEY 275 (308)
T ss_dssp CGGGCHHHHHHHHHHHHHHSC---HHHHHHHHHHHHHHTTTTT
T ss_pred ChHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHCcccc
Confidence 222 3567777776677777 7777777777777766553
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.00 E-value=3.7e-09 Score=92.97 Aligned_cols=92 Identities=17% Similarity=0.021 Sum_probs=46.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCc---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 046312 267 LGTALIDMYAKCGAVGCARLLFSRMEE---INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNH 343 (514)
Q Consensus 267 ~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 343 (514)
++..+..+|.+.|++++|++.|++..+ .++.+|..+..+|.+.|++++|+..|+++.+.. +-+..++..+..++..
T Consensus 39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 117 (259)
T d1xnfa_ 39 LLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYY 117 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH-hhhhhhHHHHHHHHHH
Confidence 333444455555555555555554442 234555555555555555555555555555531 1123344445555555
Q ss_pred cCcHHHHHHHHHHHHH
Q 046312 344 AGMVEDGYRYFHEMEH 359 (514)
Q Consensus 344 ~~~~~~a~~~~~~~~~ 359 (514)
.|+++.|...++...+
T Consensus 118 ~g~~~~A~~~~~~al~ 133 (259)
T d1xnfa_ 118 GGRDKLAQDDLLAFYQ 133 (259)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHh
Confidence 5555555555555554
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.99 E-value=3.9e-08 Score=88.90 Aligned_cols=128 Identities=5% Similarity=-0.033 Sum_probs=74.3
Q ss_pred hHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCC-CHHHHHHHhhcc---CCCChhhHHHHHHHHH
Q 046312 131 TYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCR-RKRDACKVFDDM---CERSVVSWNVIITVCV 206 (514)
Q Consensus 131 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~A~~~~~~~---~~~~~~~~~~li~~~~ 206 (514)
.|+.+-..+.+.+..++|+++++++++.. +-+..+|+....++...| ++++|...+++. .+.+..+|+.+...+.
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~ 123 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVE 123 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHH
Confidence 34444445556666677777777766663 234445566666655554 366666666655 2334556666666666
Q ss_pred hCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhC
Q 046312 207 ENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERG 260 (514)
Q Consensus 207 ~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 260 (514)
+.|++++|+..++++.+.. +-+...|..+...+...|++++|...++.+++.+
T Consensus 124 ~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~ 176 (315)
T d2h6fa1 124 WLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED 176 (315)
T ss_dssp HHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC
T ss_pred hhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC
Confidence 6666666666666666542 3345555556666666666666666666665554
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.97 E-value=7e-09 Score=91.16 Aligned_cols=198 Identities=8% Similarity=-0.082 Sum_probs=110.7
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCc---CCHHHHHHHHHHHHH
Q 046312 232 TMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEE---INVWTWSAMILGLAQ 308 (514)
Q Consensus 232 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 308 (514)
++..+..++.+.|++++|...|+..++... -+..++..+..+|.+.|++++|+..|+++.+ .+..+|..+..++..
T Consensus 39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 117 (259)
T d1xnfa_ 39 LLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY 117 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhhccCC-CCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHH
Confidence 444555666667777777777777766643 2566677777777777777777777777664 235567777777777
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCC----HH
Q 046312 309 HGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGH----LK 384 (514)
Q Consensus 309 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~----~~ 384 (514)
.|++++|...|++..+.. +.+......+..++.+.+..+.+..+....... .++...+. ++..+..... .+
T Consensus 118 ~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~ 192 (259)
T d1xnfa_ 118 GGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS---DKEQWGWN-IVEFYLGNISEQTLME 192 (259)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS---CCCSTHHH-HHHHHTTSSCHHHHHH
T ss_pred HhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc---chhhhhhh-HHHHHHHHHHHHHHHH
Confidence 788888888887777643 223333333334444455544444444444332 22222222 1222211111 12
Q ss_pred HHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCch
Q 046312 385 EAYTFIMNMP-FQPN-PIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQN 438 (514)
Q Consensus 385 ~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 438 (514)
.+...+.... ..|+ ..+|..+...+...|+ ++.|.+.++++...+|++...
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~p~~~~~ 245 (259)
T d1xnfa_ 193 RLKADATDNTSLAEHLSETNFYLGKYYLSLGD---LDSATALFKLAVANNVHNFVE 245 (259)
T ss_dssp HHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTTCCTTCHH
T ss_pred HHHHHHHHhhhcCcccHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHcCCCCHHH
Confidence 2222111111 1122 2455566777777888 888888888888877776533
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.94 E-value=3.6e-09 Score=97.05 Aligned_cols=231 Identities=9% Similarity=-0.073 Sum_probs=158.3
Q ss_pred hCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC--ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHH
Q 046312 207 ENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELG--NLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCA 284 (514)
Q Consensus 207 ~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 284 (514)
..|++++|+.+++...+.. +-+...+..+..++...+ +++++...+..+.+.........+......+...|.+++|
T Consensus 85 ~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A 163 (334)
T d1dcea1 85 SAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEE 163 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHH
Confidence 4455677888888877653 334555555555555544 4778888888887775433233334455677778888999
Q ss_pred HHHHHhcCc---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhh
Q 046312 285 RLLFSRMEE---INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVH 361 (514)
Q Consensus 285 ~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 361 (514)
+..++.+.+ .+...|+.+...+.+.|++++|...++...+. .|+. ..+...+...+..+.+...+......
T Consensus 164 l~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~---~~~~~~~~~l~~~~~a~~~~~~~l~~- 237 (334)
T d1dcea1 164 LAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV--LLKE---LELVQNAFFTDPNDQSAWFYHRWLLG- 237 (334)
T ss_dssp HHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH--HHHH---HHHHHHHHHHCSSCSHHHHHHHHHHS-
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh--HHHH---HHHHHHHHHhcchhHHHHHHHHHHHh-
Confidence 988888876 35678888888888888888776655544432 1221 12223344556666777777776653
Q ss_pred CCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchH
Q 046312 362 GIKPMRIHYHTMADILARAGHLKEAYTFIMNMP-FQP-NPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNL 439 (514)
Q Consensus 362 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 439 (514)
-+++...+..++..+...|+.++|...+.+.. ..| +..++..+...+...|+ .++|.+.++.+.+++|.....|
T Consensus 238 -~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~---~~eA~~~~~~ai~ldP~~~~y~ 313 (334)
T d1dcea1 238 -RAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLY---EKETLQYFSTLKAVDPMRAAYL 313 (334)
T ss_dssp -CCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGG---HHHHHHHHHHHHHHCGGGHHHH
T ss_pred -CcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHCcccHHHH
Confidence 23445556667777888899999999888775 445 34677778888888898 9999999999999999877777
Q ss_pred HHHHHHHHh
Q 046312 440 VIVANKYAE 448 (514)
Q Consensus 440 ~~l~~~~~~ 448 (514)
..|...+.-
T Consensus 314 ~~L~~~~~~ 322 (334)
T d1dcea1 314 DDLRSKFLL 322 (334)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhH
Confidence 777666653
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.79 E-value=1.1e-08 Score=93.62 Aligned_cols=205 Identities=8% Similarity=-0.068 Sum_probs=98.3
Q ss_pred hhhHHHHHHHHHhCC--ChhHHHHHHHHHHHCCCCCCHHHHH-HHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHH
Q 046312 195 VVSWNVIITVCVENL--WLGEAVGYFVKMKDLGFEPDETTML-VVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTAL 271 (514)
Q Consensus 195 ~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~~~~p~~~t~~-~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 271 (514)
...|..+..++...+ ++++|...+.++.+.. +++...+. .....+...+..+.|...++.+++.+. -+...++.+
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p-~~~~a~~~l 184 (334)
T d1dcea1 107 YGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYR 184 (334)
T ss_dssp HHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC-CCHHHHHHH
T ss_pred HHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCC-CCHHHHHHH
Confidence 334444433333333 2455555555554432 22233322 222344445555555555555554442 244555555
Q ss_pred HHHHHhcCCHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHH
Q 046312 272 IDMYAKCGAVGCARLLFSRMEEINVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGY 351 (514)
Q Consensus 272 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~ 351 (514)
..++.+.|++++|...+....+...... .....+...+..+++...+....... +++...+..+...+...|+.++|.
T Consensus 185 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~~~a~ 262 (334)
T d1dcea1 185 SCLLPQLHPQPDSGPQGRLPENVLLKEL-ELVQNAFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQSELESC 262 (334)
T ss_dssp HHHHHHHSCCCCSSSCCSSCHHHHHHHH-HHHHHHHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHhHHhHHHHH-HHHHHHHHhcchhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHhhHHHHH
Confidence 5555555555555444443333211111 12222344455555666666555532 223333444445555556666666
Q ss_pred HHHHHHHHhhCCCCc-hHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC-HHHHHHHH
Q 046312 352 RYFHEMEHVHGIKPM-RIHYHTMADILARAGHLKEAYTFIMNMP-FQPN-PIVLRALL 406 (514)
Q Consensus 352 ~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~ 406 (514)
..+.+.... .|+ ...+..+..+|.+.|+.++|.+.++++. ..|+ ...|..|.
T Consensus 263 ~~~~~~~~~---~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~ 317 (334)
T d1dcea1 263 KELQELEPE---NKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLR 317 (334)
T ss_dssp HHHHHHCTT---CHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred HHHHHHHhh---CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHH
Confidence 666655532 333 4455566666666677777777766664 4453 33344443
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.73 E-value=7.1e-07 Score=79.40 Aligned_cols=191 Identities=17% Similarity=0.036 Sum_probs=98.0
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHhccCChHHHHHHHHHHHHhCC-----CCchhHHHH
Q 046312 201 IITVCVENLWLGEAVGYFVKMKDL----GFEPD-ETTMLVVLSACTELGNLSLGKWVHLQLIERGT-----VLNCQLGTA 270 (514)
Q Consensus 201 li~~~~~~~~~~~a~~~~~~m~~~----~~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~~~ 270 (514)
....|...|++++|.+.|.+..+. +-.++ ..+|..+..+|.+.|++++|...++...+... .....++..
T Consensus 43 aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 122 (290)
T d1qqea_ 43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE 122 (290)
T ss_dssp HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHH
Confidence 344555566666666666555432 11111 23555556666666666666666665443210 011233444
Q ss_pred HHHHHH-hcCCHHHHHHHHHhcCc-----C----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-----CH-HHH
Q 046312 271 LIDMYA-KCGAVGCARLLFSRMEE-----I----NVWTWSAMILGLAQHGYAEEALELFSNMKNSSISP-----NY-VTF 334 (514)
Q Consensus 271 li~~~~-~~g~~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-----~~-~~~ 334 (514)
+...|. ..|++++|++.|++..+ . -..++..+...+...|++++|..+|+++....... .. ..+
T Consensus 123 l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (290)
T d1qqea_ 123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYF 202 (290)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred HHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHH
Confidence 444443 34667776666665542 1 12345666677777777777777777766532111 11 112
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHhhCCCCc------hHHHHHHHHHHHh--cCCHHHHHHHHHhCC
Q 046312 335 LGVLCACNHAGMVEDGYRYFHEMEHVHGIKPM------RIHYHTMADILAR--AGHLKEAYTFIMNMP 394 (514)
Q Consensus 335 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~------~~~~~~li~~~~~--~g~~~~A~~~~~~~~ 394 (514)
...+.++...|+++.|...+++..+ +.|+ ......++.++.. .+.+++|+..|+++.
T Consensus 203 ~~~~~~~l~~~d~~~A~~~~~~~~~---~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~ 267 (290)
T d1qqea_ 203 LKKGLCQLAATDAVAAARTLQEGQS---EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (290)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHGGGC---C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHH---hCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 2333445556777777777776653 2222 1233445555443 234667777776654
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.50 E-value=2e-06 Score=76.39 Aligned_cols=126 Identities=7% Similarity=-0.123 Sum_probs=63.6
Q ss_pred HHHHHHHHHh-CCChhHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCch------
Q 046312 198 WNVIITVCVE-NLWLGEAVGYFVKMKDL----GFEPD-ETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNC------ 265 (514)
Q Consensus 198 ~~~li~~~~~-~~~~~~a~~~~~~m~~~----~~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~------ 265 (514)
+..+...|.. .|++++|++.|++..+. +..+. ..++..+...+...|++++|...++++.........
T Consensus 120 ~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~ 199 (290)
T d1qqea_ 120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLK 199 (290)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHH
T ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHH
Confidence 3334444432 35666666666554321 11111 234555566666666666666666666554322111
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCcCCH--------HHHHHHHHHHHH--cCChHHHHHHHHHHH
Q 046312 266 QLGTALIDMYAKCGAVGCARLLFSRMEEINV--------WTWSAMILGLAQ--HGYAEEALELFSNMK 323 (514)
Q Consensus 266 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--------~~~~~li~~~~~--~~~~~~a~~~~~~m~ 323 (514)
..+...+..+...|+++.|...+++..+.++ .....++.++.. .+.+++|+..|+++.
T Consensus 200 ~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~ 267 (290)
T d1qqea_ 200 DYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (290)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 1233444455666777777777777665221 233444555443 234666666665543
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.49 E-value=4.3e-07 Score=75.85 Aligned_cols=117 Identities=7% Similarity=-0.108 Sum_probs=77.7
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHH
Q 046312 329 PNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP-FQP-NPIVLRALL 406 (514)
Q Consensus 329 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~ 406 (514)
|+...+......+.+.|++++|...|+++.... +-+...|..+..+|.+.|++++|+..|+++. ..| +..+|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~--p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHH
Confidence 555666666677777777777777777776541 2335667777777777777777777777765 444 456677777
Q ss_pred HHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC
Q 046312 407 SASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVG 450 (514)
Q Consensus 407 ~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 450 (514)
.++...|+ ++.|...++.+.++.|++...+...+..+...+
T Consensus 80 ~~~~~l~~---~~~A~~~~~~al~l~p~~~~~~~~~~~~~l~~~ 120 (201)
T d2c2la1 80 QCQLEMES---YDEAIANLQRAYSLAKEQRLNFGDDIPSALRIA 120 (201)
T ss_dssp HHHHHTTC---HHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHH
T ss_pred HHHHHCCC---HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 77777777 777777777777777655544444444444433
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.47 E-value=3.7e-06 Score=69.31 Aligned_cols=87 Identities=11% Similarity=-0.085 Sum_probs=67.6
Q ss_pred HHHHHhcCCHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHH
Q 046312 272 IDMYAKCGAVGCARLLFSRMEEINVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGY 351 (514)
Q Consensus 272 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~ 351 (514)
...+...|++++|++.|.++.+++..+|..+..+|...|++++|+..|++.++.. +-+...|..+..++.+.|++++|.
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~~A~ 90 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLAI 90 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHHHHH
Confidence 3456777888888888888877888888888888888888888888888888743 233566777777888888888888
Q ss_pred HHHHHHHH
Q 046312 352 RYFHEMEH 359 (514)
Q Consensus 352 ~~~~~~~~ 359 (514)
..|++...
T Consensus 91 ~~~~kAl~ 98 (192)
T d1hh8a_ 91 KDLKEALI 98 (192)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887764
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.44 E-value=1.2e-06 Score=65.70 Aligned_cols=91 Identities=10% Similarity=0.012 Sum_probs=63.3
Q ss_pred HHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC
Q 046312 373 MADILARAGHLKEAYTFIMNMP--FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVG 450 (514)
Q Consensus 373 li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 450 (514)
-...+.+.|++++|+..|+++. .+-+...|..+..++...|+ ++.|...+..+.+++|+++.+|..++.++...|
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~ 85 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGD---YQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLN 85 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhccccccccccc---ccccchhhhhHHHhccchhhHHHHHHHHHHHcc
Confidence 3455666777777777777664 33356667777777777777 777777777777777777777777777777777
Q ss_pred CHHHHHHHHHHHHhCC
Q 046312 451 MWEKVSNVRRFMKNVG 466 (514)
Q Consensus 451 ~~~~A~~~~~~m~~~~ 466 (514)
++++|...+++..+..
T Consensus 86 ~~~~A~~~~~~a~~~~ 101 (117)
T d1elwa_ 86 RFEEAKRTYEEGLKHE 101 (117)
T ss_dssp CHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHhC
Confidence 7777777777776543
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.40 E-value=2.9e-06 Score=63.58 Aligned_cols=103 Identities=13% Similarity=0.030 Sum_probs=67.2
Q ss_pred HHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCC
Q 046312 338 LCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMP--FQPNPIVLRALLSASSIHDAK 415 (514)
Q Consensus 338 l~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~ 415 (514)
...+...|++++|...|++..+.. +-+...|..+..+|.+.|++++|+..++++. .+.+...|..+..++...|+
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~- 86 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKLD--PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNR- 86 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC--CcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccC-
Confidence 344556677777777777766541 2235566666777777777777777776664 33456667777777777777
Q ss_pred CcchHHHHHHHHHHhcCCCCCchHHHHHHH
Q 046312 416 YQDGVGNEVRRRLLELEPRGSQNLVIVANK 445 (514)
Q Consensus 416 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 445 (514)
+++|...++.+.+.+|+++.++..+.++
T Consensus 87 --~~~A~~~~~~a~~~~p~~~~~~~~l~~l 114 (117)
T d1elwa_ 87 --FEEAKRTYEEGLKHEANNPQLKEGLQNM 114 (117)
T ss_dssp --HHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 7777777777777777766655555444
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.39 E-value=6.6e-06 Score=67.75 Aligned_cols=139 Identities=8% Similarity=-0.138 Sum_probs=91.0
Q ss_pred HHHHHcCCCHHHHHHHhhccCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHH
Q 046312 171 VRFYGSCRRKRDACKVFDDMCERSVVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGK 250 (514)
Q Consensus 171 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~ 250 (514)
...+...|++++|.+.|+++.+++..+|..+..+|...|++++|++.|++.++.. +-+...|..+..++.+.|++++|.
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~~A~ 90 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLAI 90 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHHHHH
Confidence 3456778888888888888877777788888888888888888888888888764 345667777777788888888888
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCcC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 046312 251 WVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEEI-NVWTWSAMILGLAQHGYAEEALELFSNMKNSSI 327 (514)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 327 (514)
..|+..+..........| ...|. ..+. ...++..+..++.+.|++++|.+.+....+...
T Consensus 91 ~~~~kAl~~~~~n~~~~~-------~~~~~----------~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~ 151 (192)
T d1hh8a_ 91 KDLKEALIQLRGNQLIDY-------KILGL----------QFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 151 (192)
T ss_dssp HHHHHHHHTTTTCSEEEC-------GGGTB----------CCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhCccCchHHH-------HHhhh----------hcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 877777653211000000 00000 0000 123445566677778888888888777776433
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.36 E-value=4.4e-06 Score=66.60 Aligned_cols=116 Identities=8% Similarity=-0.015 Sum_probs=88.5
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHhhCCCC-chHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcC
Q 046312 337 VLCACNHAGMVEDGYRYFHEMEHVHGIKP-MRIHYHTMADILARAGHLKEAYTFIMNMP-FQP-NPIVLRALLSASSIHD 413 (514)
Q Consensus 337 ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~ 413 (514)
....|.+.|++++|...|+++.+. .| +...|..+..+|...|++++|...|+++. ..| +...|..+..++...|
T Consensus 16 ~gn~~~~~~~y~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g 92 (159)
T d1a17a_ 16 QANDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG 92 (159)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHhhhcccc---chhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcC
Confidence 345677888888888888888875 34 46778888888888999999998888875 334 5678888888899999
Q ss_pred CCCcchHHHHHHHHHHhcCCCCCchHHHHHHHH--HhcCCHHHHHHH
Q 046312 414 AKYQDGVGNEVRRRLLELEPRGSQNLVIVANKY--AEVGMWEKVSNV 458 (514)
Q Consensus 414 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~--~~~g~~~~A~~~ 458 (514)
+ +++|...++.+.++.|+++.++..+..+. ...+.+++|...
T Consensus 93 ~---~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 93 K---FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp C---HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C---HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9 99999999999999998887776665554 333445566544
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.35 E-value=1.1e-06 Score=65.48 Aligned_cols=88 Identities=14% Similarity=0.031 Sum_probs=79.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhc
Q 046312 372 TMADILARAGHLKEAYTFIMNMP-FQP-NPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEV 449 (514)
Q Consensus 372 ~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 449 (514)
.+...+.+.|++++|...|++.. ..| +...|..+...+...|+ ++.|...++++.+++|+++.++..++.+|...
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~---~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~ 97 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEK---DGLAIIALNHARMLDPKDIAVHAALAVSHTNE 97 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhh---HHHhhcccccccccccccccchHHHHHHHHHC
Confidence 45667889999999999999986 445 68889999999999999 99999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHH
Q 046312 450 GMWEKVSNVRRFM 462 (514)
Q Consensus 450 g~~~~A~~~~~~m 462 (514)
|++++|.+.+++.
T Consensus 98 g~~~~A~~~l~~~ 110 (112)
T d1hxia_ 98 HNANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 9999999999875
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.32 E-value=2.1e-06 Score=71.46 Aligned_cols=97 Identities=7% Similarity=-0.124 Sum_probs=83.8
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCc-hHHHHH
Q 046312 294 INVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPM-RIHYHT 372 (514)
Q Consensus 294 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 372 (514)
|+...+......+.+.|++++|+..|++.++.. +-+...|..+..+|.+.|+++.|...|++.. .+.|+ ...|..
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al---~l~p~~~~a~~~ 77 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRAL---ELDGQSVKAHFF 77 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHT---TSCTTCHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHH---HhCCCcHHHHHH
Confidence 455666777889999999999999999998853 3457778889999999999999999999998 45675 778889
Q ss_pred HHHHHHhcCCHHHHHHHHHhCC
Q 046312 373 MADILARAGHLKEAYTFIMNMP 394 (514)
Q Consensus 373 li~~~~~~g~~~~A~~~~~~~~ 394 (514)
+..+|.+.|++++|+..|+++.
T Consensus 78 lg~~~~~l~~~~~A~~~~~~al 99 (201)
T d2c2la1 78 LGQCQLEMESYDEAIANLQRAY 99 (201)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHH
Confidence 9999999999999999999874
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.26 E-value=4e-06 Score=66.81 Aligned_cols=93 Identities=16% Similarity=0.063 Sum_probs=84.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 046312 371 HTMADILARAGHLKEAYTFIMNMP--FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAE 448 (514)
Q Consensus 371 ~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 448 (514)
......|.+.|++++|...|+++. .+-+...|..+...+...|+ ++.|...++++++++|++..+|..++.+|..
T Consensus 14 ~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~---~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~ 90 (159)
T d1a17a_ 14 KTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTEC---YGYALGDATRAIELDKKYIKGYYRRAASNMA 90 (159)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccc---cchHHHHHHHHHHHcccchHHHHHHHHHHHH
Confidence 334567889999999999999986 44478889999999999999 9999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhCC
Q 046312 449 VGMWEKVSNVRRFMKNVG 466 (514)
Q Consensus 449 ~g~~~~A~~~~~~m~~~~ 466 (514)
.|++++|...+++.....
T Consensus 91 ~g~~~eA~~~~~~a~~~~ 108 (159)
T d1a17a_ 91 LGKFRAALRDYETVVKVK 108 (159)
T ss_dssp TTCHHHHHHHHHHHHHHS
T ss_pred cCCHHHHHHHHHHHHHcC
Confidence 999999999999998765
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.17 E-value=3.1e-06 Score=63.74 Aligned_cols=103 Identities=13% Similarity=0.012 Sum_probs=73.9
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCC---HHHHHHHHHhCC-CCCCH---HHHHHHHH
Q 046312 335 LGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGH---LKEAYTFIMNMP-FQPNP---IVLRALLS 407 (514)
Q Consensus 335 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~~~-~~p~~---~~~~~l~~ 407 (514)
..++..+...+++++|.+.|++..... +.+..++..+..++.+.++ .++|+.+|+++. ..|+. .++..|..
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~--p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~ 80 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAG--SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV 80 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS--CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Confidence 456777778888888888888888641 3346677777877776554 446888888865 33433 35667788
Q ss_pred HHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHH
Q 046312 408 ASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIV 442 (514)
Q Consensus 408 ~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 442 (514)
+|...|+ ++.|.+.++++.+++|++..+....
T Consensus 81 ~y~~~g~---~~~A~~~~~~aL~~~P~~~~A~~l~ 112 (122)
T d1nzna_ 81 GNYRLKE---YEKALKYVRGLLQTEPQNNQAKELE 112 (122)
T ss_dssp HHHHTTC---HHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHhh---hHHHHHHHHHHHHhCcCCHHHHHHH
Confidence 8888888 8888888888888888876554433
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.14 E-value=0.00047 Score=59.47 Aligned_cols=227 Identities=9% Similarity=-0.086 Sum_probs=116.0
Q ss_pred hhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCChHHHHHHHHHHHHhCCCCchhHHHH
Q 046312 195 VVSWNVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTE----LGNLSLGKWVHLQLIERGTVLNCQLGTA 270 (514)
Q Consensus 195 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 270 (514)
+..+..|...+.+.+++++|++.|++..+.| +...+..|-..|.. ..+...+...+....+.+
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---------- 68 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---------- 68 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc----------
Confidence 3455555556666677777777777766654 33333333333332 334445555544444443
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCcCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----h
Q 046312 271 LIDMYAKCGAVGCARLLFSRMEEINVWTWSAMILGLAQ----HGYAEEALELFSNMKNSSISPNYVTFLGVLCAC----N 342 (514)
Q Consensus 271 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~----~ 342 (514)
+......+...+.. .++.+.|...++...+.|.... ...+...+ .
T Consensus 69 ------------------------~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a---~~~l~~~~~~~~~ 121 (265)
T d1ouva_ 69 ------------------------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEG---CASLGGIYHDGKV 121 (265)
T ss_dssp ------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHH---HHHHHHHHHHCSS
T ss_pred ------------------------ccchhhccccccccccccchhhHHHHHHHhhhhhhhhhhH---HHhhcccccCCCc
Confidence 22222222222221 3455556666666555442111 11111111 1
Q ss_pred ccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCCCc
Q 046312 343 HAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILAR----AGHLKEAYTFIMNMPFQPNPIVLRALLSASSI-HDAKYQ 417 (514)
Q Consensus 343 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~-~~~~~~ 417 (514)
.......+...+..... ..+...+..|...|.. ..+...+...++......+......|...+.. .+-..+
T Consensus 122 ~~~~~~~a~~~~~~~~~----~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d 197 (265)
T d1ouva_ 122 VTRDFKKAVEYFTKACD----LNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKN 197 (265)
T ss_dssp SCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCC
T ss_pred ccchhHHHHHHhhhhhc----ccccchhhhhhhhhccCCCcccccccchhhhhccccccccccccchhhhcccCcccccc
Confidence 23344555555555443 2334445555555554 34555666666555433355555445444443 111122
Q ss_pred chHHHHHHHHHHhcCCCCCchHHHHHHHHHh----cCCHHHHHHHHHHHHhCCC
Q 046312 418 DGVGNEVRRRLLELEPRGSQNLVIVANKYAE----VGMWEKVSNVRRFMKNVGL 467 (514)
Q Consensus 418 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~ 467 (514)
.+.|...++++.+.+ ++.++..|+.+|.+ ..+.++|.+.|++..+.|.
T Consensus 198 ~~~A~~~~~~aa~~g--~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 198 FKEALARYSKACELE--NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp HHHHHHHHHHHHHTT--CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred hhhhhhhHhhhhccc--CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence 777888888877765 34567778887775 3467788888888776664
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.14 E-value=3.2e-05 Score=62.06 Aligned_cols=133 Identities=9% Similarity=-0.061 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHH
Q 046312 298 TWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADIL 377 (514)
Q Consensus 298 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 377 (514)
.+......+.+.|++++|+..|++.++.. |... +..+.-......+. ..+|..+..+|
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~--~~~~------------~~~~~~~~~~~~~~--------~~~~~nla~~y 72 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSWL--EYES------------SFSNEEAQKAQALR--------LASHLNLAMCH 72 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCC------------CCCSHHHHHHHHHH--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHh--hhcc------------ccchHHHhhhchhH--------HHHHHHHHHHH
Confidence 34445567778888888888888776531 1000 00000001111111 23566788889
Q ss_pred HhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHH
Q 046312 378 ARAGHLKEAYTFIMNMP-FQP-NPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKV 455 (514)
Q Consensus 378 ~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 455 (514)
.+.|++++|+..+++.. ..| +...+..+..++...|+ ++.|...++.+.+++|+++.+...+..+..+.+...+.
T Consensus 73 ~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~---~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~ 149 (170)
T d1p5qa1 73 LKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVND---FELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 149 (170)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhh---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998886 444 78889999999999999 99999999999999999988888888877666655543
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.10 E-value=0.00065 Score=58.57 Aligned_cols=92 Identities=11% Similarity=-0.064 Sum_probs=47.7
Q ss_pred hHHHHHHHHHHh----cCCHHHHHHHHHhcCc-CCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 046312 266 QLGTALIDMYAK----CGAVGCARLLFSRMEE-INVWTWSAMILGLAQ----HGYAEEALELFSNMKNSSISPNYVTFLG 336 (514)
Q Consensus 266 ~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 336 (514)
..+..|...|.. ..+...+..+++...+ .+..+...+...|.. ..+.++|..+|++..+.| +...+..
T Consensus 143 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~ 219 (265)
T d1ouva_ 143 DGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFN 219 (265)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred chhhhhhhhhccCCCcccccccchhhhhccccccccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHH
Confidence 334444444443 3344455555554443 345555555544544 456777777777776665 2334444
Q ss_pred HHHHHhc----cCcHHHHHHHHHHHHHh
Q 046312 337 VLCACNH----AGMVEDGYRYFHEMEHV 360 (514)
Q Consensus 337 ll~~~~~----~~~~~~a~~~~~~~~~~ 360 (514)
|...|.+ ..+.++|..+|++..+.
T Consensus 220 LG~~y~~G~g~~~n~~~A~~~~~kAa~~ 247 (265)
T d1ouva_ 220 LGAMQYNGEGVTRNEKQAIENFKKGCKL 247 (265)
T ss_dssp HHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred HHHHHHcCCCCccCHHHHHHHHHHHHHC
Confidence 4444443 23566666666666553
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.05 E-value=0.0035 Score=55.39 Aligned_cols=43 Identities=7% Similarity=0.033 Sum_probs=18.5
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 046312 199 NVIITVCVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTE 242 (514)
Q Consensus 199 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~ 242 (514)
..++..|-..|.+++...+++..... -..+...++.++..|++
T Consensus 103 ~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak 145 (336)
T d1b89a_ 103 EELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSK 145 (336)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHH
Confidence 34444444455555554444443321 12333344444444444
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.02 E-value=1.7e-05 Score=59.44 Aligned_cols=100 Identities=15% Similarity=0.056 Sum_probs=72.3
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHHhhCCCCc-hHHHHHHHH
Q 046312 300 SAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAG---MVEDGYRYFHEMEHVHGIKPM-RIHYHTMAD 375 (514)
Q Consensus 300 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~ 375 (514)
..++..+...+++++|.+.|++.+..+ +.+..++..+..++.+.+ ++++|..+++++... ...|+ ...+..+..
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~-~~~~~~~~~~~~Lg~ 80 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK-GSKEEQRDYVFYLAV 80 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT-SCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhc-cCCchHHHHHHHHHH
Confidence 356777888889999999999888854 445677777777777654 445688888887753 22222 236677888
Q ss_pred HHHhcCCHHHHHHHHHhCC-CCCCHHH
Q 046312 376 ILARAGHLKEAYTFIMNMP-FQPNPIV 401 (514)
Q Consensus 376 ~~~~~g~~~~A~~~~~~~~-~~p~~~~ 401 (514)
+|.+.|++++|.+.|+++. ..|+..-
T Consensus 81 ~y~~~g~~~~A~~~~~~aL~~~P~~~~ 107 (122)
T d1nzna_ 81 GNYRLKEYEKALKYVRGLLQTEPQNNQ 107 (122)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHhhhHHHHHHHHHHHHhCcCCHH
Confidence 8889999999999998885 5665433
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.91 E-value=0.00014 Score=58.06 Aligned_cols=142 Identities=8% Similarity=-0.091 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHH
Q 046312 297 WTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADI 376 (514)
Q Consensus 297 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 376 (514)
..+......+.+.|++++|...|++.+..- +. . .....+. ......+ ...+|..+..+
T Consensus 16 ~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~--~~----------~-~~~~~~~-~~~~~~~--------~~~~~~Nla~~ 73 (168)
T d1kt1a1 16 AIVKEKGTVYFKGGKYVQAVIQYGKIVSWL--EM----------E-YGLSEKE-SKASESF--------LLAAFLNLAMC 73 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TT----------C-CSCCHHH-HHHHHHH--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--HH----------h-hccchhh-hhhcchh--------HHHHHHhHHHH
Confidence 345556667777888888888777765410 00 0 0000000 0001111 12356667888
Q ss_pred HHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHH
Q 046312 377 LARAGHLKEAYTFIMNMP--FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEK 454 (514)
Q Consensus 377 ~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 454 (514)
|.+.|++++|+..+++.. .+.+...|..+..++...|+ ++.|...++.+.+++|+++.+...+..+..+.+...+
T Consensus 74 ~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~---~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~e 150 (168)
T d1kt1a1 74 YLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNE---FESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNE 150 (168)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHH
Confidence 999999999999998885 45578889999999999999 9999999999999999998888888777766665443
Q ss_pred -HHHHHHHHH
Q 046312 455 -VSNVRRFMK 463 (514)
Q Consensus 455 -A~~~~~~m~ 463 (514)
..+++..|-
T Consensus 151 ~~kk~~~~~f 160 (168)
T d1kt1a1 151 RDRRTYANMF 160 (168)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 445555443
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.88 E-value=3.5e-05 Score=56.89 Aligned_cols=87 Identities=10% Similarity=-0.065 Sum_probs=43.9
Q ss_pred HHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCH
Q 046312 101 IRGYAWSDRPREAVWVFIDMKRRGIKPTEFTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRK 180 (514)
Q Consensus 101 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 180 (514)
...+.+.|++++|+..|++..+.. +-+...|..+..++.+.|++++|+..+++..+.. +.+..++..+...|...|++
T Consensus 23 g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g~~ 100 (112)
T d1hxia_ 23 GLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNA 100 (112)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHCCCH
Confidence 344455555555555555555432 1133345555555555555555555555555543 22344455555555555555
Q ss_pred HHHHHHhhc
Q 046312 181 RDACKVFDD 189 (514)
Q Consensus 181 ~~A~~~~~~ 189 (514)
++|.+.+++
T Consensus 101 ~~A~~~l~~ 109 (112)
T d1hxia_ 101 NAALASLRA 109 (112)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555554443
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.86 E-value=6.7e-05 Score=60.11 Aligned_cols=65 Identities=14% Similarity=-0.020 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 046312 400 IVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNVGL 467 (514)
Q Consensus 400 ~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 467 (514)
.+|..+..+|.+.|+ ++.|...++.+++++|+++.++..++.+|...|++++|...|++..+.+.
T Consensus 63 ~~~~nla~~y~k~~~---~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P 127 (170)
T d1p5qa1 63 ASHLNLAMCHLKLQA---FSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP 127 (170)
T ss_dssp HHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHhhhh---cccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCC
Confidence 456677888999999 99999999999999999999999999999999999999999999987553
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.85 E-value=3.5e-05 Score=58.51 Aligned_cols=92 Identities=7% Similarity=0.010 Sum_probs=75.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCch-------HH
Q 046312 370 YHTMADILARAGHLKEAYTFIMNMP--FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQN-------LV 440 (514)
Q Consensus 370 ~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~-------~~ 440 (514)
+..+...+.+.|++++|+..|.+.. .+.+...+..+..+|...|+ ++.|...++.+++++|+++.. |.
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~---~~~A~~~~~~al~l~~~~~~~~~~~a~~~~ 83 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGD---YNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCc---hHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 4557778888999999999998875 44467888889999999999 999999999999988877654 45
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh
Q 046312 441 IVANKYAEVGMWEKVSNVRRFMKN 464 (514)
Q Consensus 441 ~l~~~~~~~g~~~~A~~~~~~m~~ 464 (514)
.++..+...|++++|.+.+++...
T Consensus 84 ~lg~~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 84 RIGNSYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHh
Confidence 677778888899999999987754
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.83 E-value=0.0001 Score=58.90 Aligned_cols=132 Identities=9% Similarity=0.021 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCC-chHHHHHHHHH
Q 046312 298 TWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKP-MRIHYHTMADI 376 (514)
Q Consensus 298 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~ 376 (514)
.+......+...|++++|+..|.++++. ............. . .+.| ....|..+..+
T Consensus 29 ~~~~~~~~~~~~~~y~~Ai~~y~~al~~------------~~~~~~~~~~~~~-------~---~~~~~~~~~~~nla~~ 86 (169)
T d1ihga1 29 DLKNIGNTFFKSQNWEMAIKKYTKVLRY------------VEGSRAAAEDADG-------A---KLQPVALSCVLNIGAC 86 (169)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH------------HHHHHHHSCHHHH-------G---GGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh------------hhhhhhhhhhHHH-------H---HhChhhHHHHHHHHHH
Confidence 3445566677888888888888776541 0000000000000 0 1122 35567778889
Q ss_pred HHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHH
Q 046312 377 LARAGHLKEAYTFIMNMP-FQP-NPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEK 454 (514)
Q Consensus 377 ~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 454 (514)
+.+.|++++|+..++++. ..| +...|..+..++...|+ ++.|.+.++.+.+++|++..+...+..+..+.....+
T Consensus 87 ~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~---~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~~ 163 (169)
T d1ihga1 87 KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKE---YDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKD 163 (169)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998875 444 67889999999999999 9999999999999999998888787777665544443
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.80 E-value=0.0098 Score=52.39 Aligned_cols=239 Identities=13% Similarity=0.084 Sum_probs=134.2
Q ss_pred CCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCHHHHHHHhhccCCCChhhHHHHHHHHH
Q 046312 127 PTEFTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKRDACKVFDDMCERSVVSWNVIITVCV 206 (514)
Q Consensus 127 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~ 206 (514)
||..--..+.+.|.+.|.++.|..++..+ .-|..++..+.+.++++.|.+++.+. .+..+|..+...+.
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~---------~d~~rl~~~~v~l~~~~~avd~~~k~--~~~~~~k~~~~~l~ 80 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACV 80 (336)
T ss_dssp C----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH--TCHHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhC---------CCHHHHHHHHHhhccHHHHHHHHHHc--CCHHHHHHHHHHHH
Confidence 44444555666777778888887777643 23566777777888888887777655 35567777777777
Q ss_pred hCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 046312 207 ENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARL 286 (514)
Q Consensus 207 ~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 286 (514)
+.....-+ .+...+...+......++..|-..|.+++...+++..... -..+...++.++..|++.+ .++..+
T Consensus 81 ~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~-~~kl~e 153 (336)
T d1b89a_ 81 DGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFK-PQKMRE 153 (336)
T ss_dssp HTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTC-HHHHHH
T ss_pred hCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhC-hHHHHH
Confidence 77655443 2223334456666678888999999999999999887643 2456778889999998865 455555
Q ss_pred HHHhcCc-CCH----------HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 046312 287 LFSRMEE-INV----------WTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFH 355 (514)
Q Consensus 287 ~~~~~~~-~~~----------~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 355 (514)
.+..... -|. ..|.-++..|.+.|+++.|..+.-+ -.++..-....+..+.+..+.+...++..
T Consensus 154 ~l~~~s~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~-----~~~~~~~~~~f~e~~~k~~N~e~~~~~i~ 228 (336)
T d1b89a_ 154 HLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMN-----HPTDAWKEGQFKDIITKVANVELYYRAIQ 228 (336)
T ss_dssp HHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHH-----STTTTCCHHHHHHHHHHCSSTHHHHHHHH
T ss_pred HHHhccccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHHH-----cchhhhhHHHHHHHHHccCChHHHHHHHH
Confidence 5554322 111 2344555556666666655544322 12232233444555666666666555555
Q ss_pred HHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 046312 356 EMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNM 393 (514)
Q Consensus 356 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 393 (514)
...+. .|+ ..+.++......-+..++.+.+++-
T Consensus 229 ~yL~~---~p~--~i~~lL~~v~~~~d~~r~V~~~~k~ 261 (336)
T d1b89a_ 229 FYLEF---KPL--LLNDLLMVLSPRLDHTRAVNYFSKV 261 (336)
T ss_dssp HHHHH---CGG--GHHHHHHHHGGGCCHHHHHHHHHHT
T ss_pred HHHHc---CHH--HHHHHHHHhccCCCHHHHHHHHHhc
Confidence 55442 343 2344444444455555555555444
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.79 E-value=0.00011 Score=57.49 Aligned_cols=127 Identities=9% Similarity=-0.124 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHH
Q 046312 297 WTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADI 376 (514)
Q Consensus 297 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 376 (514)
..+..-...+.+.|++.+|+..|.+.++.- +... ...-.... .... .....+|..+..+
T Consensus 18 ~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~--~~~~-----------~~~~~~~~---~~~~-----~~~~~~~~Nla~~ 76 (153)
T d2fbna1 18 FDIKEEGNEFFKKNEINEAIVKYKEALDFF--IHTE-----------EWDDQILL---DKKK-----NIEISCNLNLATC 76 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTCT-----------TCCCHHHH---HHHH-----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cchh-----------hhhhHHHH---Hhhh-----hHHHHHHhhHHHH
Confidence 345556677888888888888888877631 1100 00000000 0000 1123466778888
Q ss_pred HHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 046312 377 LARAGHLKEAYTFIMNMP--FQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYA 447 (514)
Q Consensus 377 ~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 447 (514)
|.+.|++++|++.++++. .+.+..+|..+..++...|+ ++.|...++.+.+++|++..+...+..+..
T Consensus 77 ~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~---~~~A~~~~~~al~l~P~n~~~~~~l~~~~~ 146 (153)
T d2fbna1 77 YNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGF---LEEAKENLYKAASLNPNNLDIRNSYELCVN 146 (153)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 889999999999988875 34467888889999999999 999999999999999988776666555443
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.75 E-value=0.00028 Score=55.15 Aligned_cols=64 Identities=8% Similarity=0.026 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 046312 400 IVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNVG 466 (514)
Q Consensus 400 ~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 466 (514)
.+|..+..+|.+.|+ ++.|.+.++.+.+++|.+..+|..++.+|...|++++|...|++..+.+
T Consensus 68 ~~~~Nla~~~~~l~~---~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~ 131 (153)
T d2fbna1 68 SCNLNLATCYNKNKD---YPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN 131 (153)
T ss_dssp HHHHHHHHHHHHTTC---HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHhhHHHHHHHhcc---cchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 466778888999999 9999999999999999999999999999999999999999999998754
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.69 E-value=0.0003 Score=53.02 Aligned_cols=92 Identities=11% Similarity=0.050 Sum_probs=46.8
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCc-----hHHHHHHHH
Q 046312 301 AMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPM-----RIHYHTMAD 375 (514)
Q Consensus 301 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~ 375 (514)
.+...+.+.|++++|+..|++.++.+ +.+...+..+..+|...|+++.|...++++.+...-.+. ..+|..+..
T Consensus 9 ~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~ 87 (128)
T d1elra_ 9 ELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGN 87 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHH
Confidence 34445555566666666666555532 223445555555566666666666665555432100111 124444555
Q ss_pred HHHhcCCHHHHHHHHHhC
Q 046312 376 ILARAGHLKEAYTFIMNM 393 (514)
Q Consensus 376 ~~~~~g~~~~A~~~~~~~ 393 (514)
.+...+++++|.+.|++.
T Consensus 88 ~~~~~~~~~~A~~~~~ka 105 (128)
T d1elra_ 88 SYFKEEKYKDAIHFYNKS 105 (128)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHH
Confidence 555556666666665544
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.68 E-value=8.9e-06 Score=78.03 Aligned_cols=93 Identities=11% Similarity=-0.063 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 046312 368 IHYHTMADILARAGHLKEAYTFIMNMPFQPN-PIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKY 446 (514)
Q Consensus 368 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 446 (514)
..+..+...+.+.|+.++|...+.+.. .++ ...+..+...+...++ ++.|...++++.+++|++..+|..|+.+|
T Consensus 121 ~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~LG~l~~~~~~---~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~ 196 (497)
T d1ya0a1 121 VKSSQLGIISNKQTHTSAIVKPQSSSC-SYICQHCLVHLGDIARYRNQ---TSQAESYYRHAAQLVPSNGQPYNQLAILA 196 (497)
T ss_dssp ----------------------CCHHH-HHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTTBSHHHHHHHHHH
T ss_pred HHHHHhHHHHHhCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHccc---HHHHHHHHHHHHHHCCCchHHHHHHHHHH
Confidence 344445555555565555555443332 111 2344445555666666 66666666666666666666666666666
Q ss_pred HhcCCHHHHHHHHHHHHh
Q 046312 447 AEVGMWEKVSNVRRFMKN 464 (514)
Q Consensus 447 ~~~g~~~~A~~~~~~m~~ 464 (514)
...|+..+|...|.+...
T Consensus 197 ~~~~~~~~A~~~y~ral~ 214 (497)
T d1ya0a1 197 SSKGDHLTTIFYYCRSIA 214 (497)
T ss_dssp HHTTCHHHHHHHHHHHHS
T ss_pred HHcCCHHHHHHHHHHHHh
Confidence 666666666666655543
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.60 E-value=0.0002 Score=57.63 Aligned_cols=70 Identities=11% Similarity=-0.025 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHH-----hCCCCCCCc
Q 046312 400 IVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMK-----NVGLKKMKG 472 (514)
Q Consensus 400 ~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-----~~~~~~~~~ 472 (514)
..+..+...+...|+ ++.+...++.+.+.+|.+...|..++.+|.+.|+.++|.+.|++++ +.|+.|.+.
T Consensus 68 ~a~~~la~~~~~~g~---~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~ 142 (179)
T d2ff4a2 68 LAHTAKAEAEIACGR---ASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 142 (179)
T ss_dssp HHHHHHHHHHHHTTC---HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHHHHCCC---chHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHH
Confidence 456778889999999 9999999999999999999999999999999999999999999985 357766543
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.47 E-value=4.2e-05 Score=73.23 Aligned_cols=218 Identities=5% Similarity=-0.064 Sum_probs=107.4
Q ss_pred HHHHHHHHHHHcCCCCCc-chHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCc-chHHHHHHHHHcCCCHHHHHHHhhc
Q 046312 112 EAVWVFIDMKRRGIKPTE-FTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDV-YTNNNLVRFYGSCRRKRDACKVFDD 189 (514)
Q Consensus 112 ~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~A~~~~~~ 189 (514)
+|.+.|++..+ ++||. ..+..+..++...|++++| +++++..+ |+. ..++.....+ + ..+..+.+.++.
T Consensus 4 eA~q~~~qA~~--l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~d--p~~a~~~~~e~~Lw-~-~~y~~~ie~~r~ 74 (497)
T d1ya0a1 4 QSAQYLRQAEV--LKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTD--LEYALDKKVEQDLW-N-HAFKNQITTLQG 74 (497)
T ss_dssp HHHHHHHHHHH--HHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHC--HHHHHHHTHHHHHH-H-HHTHHHHHHHHH
T ss_pred HHHHHHHHHHH--cCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcC--hhhHHHHhHHHHHH-H-HHHHHHHHHHHH
Confidence 67788888766 34544 3566666677777777655 66666542 221 1122111111 1 113344444444
Q ss_pred cC----CCChhhHHHHHHHH--HhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCC
Q 046312 190 MC----ERSVVSWNVIITVC--VENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVL 263 (514)
Q Consensus 190 ~~----~~~~~~~~~li~~~--~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 263 (514)
.. .++..........+ ...+.++.++..+....+.. .++...+..+...+.+.|+.+.|...+.......
T Consensus 75 ~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--- 150 (497)
T d1ya0a1 75 QAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI--- 150 (497)
T ss_dssp HHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHHH---
T ss_pred hcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---
Confidence 31 12222222111111 22344455544444333321 2344556666667777788888877766655432
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCc--C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 046312 264 NCQLGTALIDMYAKCGAVGCARLLFSRMEE--I-NVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCA 340 (514)
Q Consensus 264 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 340 (514)
....+..+...+...|++++|+..|++..+ | +...|+.+...+...|+..+|...|.+.+... .|-..++..|...
T Consensus 151 ~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~ 229 (497)
T d1ya0a1 151 CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKA 229 (497)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHH
Confidence 134566778888888888888888888765 3 45788888888888888888888888887753 4556667777665
Q ss_pred Hhc
Q 046312 341 CNH 343 (514)
Q Consensus 341 ~~~ 343 (514)
+.+
T Consensus 230 ~~~ 232 (497)
T d1ya0a1 230 LSK 232 (497)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.44 E-value=0.0011 Score=52.54 Aligned_cols=63 Identities=3% Similarity=-0.120 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHh
Q 046312 297 WTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHV 360 (514)
Q Consensus 297 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 360 (514)
..|..+..++.+.|++++|+..+++.++.. +.+..+|..+..++...|+++.|...|+.+.+.
T Consensus 78 ~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l 140 (169)
T d1ihga1 78 SCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 140 (169)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence 455556666777777777777777776642 233556666667777777777777777777653
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.42 E-value=0.00089 Score=53.13 Aligned_cols=64 Identities=11% Similarity=-0.014 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 046312 400 IVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNVG 466 (514)
Q Consensus 400 ~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 466 (514)
..|..+..+|...|+ +++|...++.+.+++|++..+|..++.+|...|++++|...|++.....
T Consensus 65 ~~~~Nla~~~~~l~~---~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~ 128 (168)
T d1kt1a1 65 AAFLNLAMCYLKLRE---YTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 128 (168)
T ss_dssp HHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred HHHHhHHHHHHHhhh---cccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 345567778899999 9999999999999999999999999999999999999999999998754
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.39 E-value=0.0021 Score=51.40 Aligned_cols=121 Identities=9% Similarity=0.011 Sum_probs=76.3
Q ss_pred HHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCChHHHHH
Q 046312 238 SACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCARLLFSRMEEINVWTWSAMILGLAQHGYAEEALE 317 (514)
Q Consensus 238 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 317 (514)
......|++++|...|...+..--.+ . +......+-+...-..+.......+..+...+...|++++|+.
T Consensus 19 ~~~~~~g~~e~A~~~~~~AL~l~rG~--~--------l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~ 88 (179)
T d2ff4a2 19 VHAAAAGRFEQASRHLSAALREWRGP--V--------LDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIA 88 (179)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCCSS--T--------TGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCccc--c--------cccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHH
Confidence 45667788888888887777642110 0 0000000001111111122234567778888888888888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHH----hhCCCCchHH
Q 046312 318 LFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEH----VHGIKPMRIH 369 (514)
Q Consensus 318 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~p~~~~ 369 (514)
.++++++.. +-+...|..++.++...|+.++|.+.|+++.+ ..|+.|...+
T Consensus 89 ~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 89 ELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 888888753 34577788888888888888888888888743 2588887655
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.27 E-value=6.9e-05 Score=58.16 Aligned_cols=47 Identities=9% Similarity=0.154 Sum_probs=29.7
Q ss_pred chHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCC-----------HHHHHHHHHHHHh
Q 046312 418 DGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGM-----------WEKVSNVRRFMKN 464 (514)
Q Consensus 418 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~-----------~~~A~~~~~~m~~ 464 (514)
+++|...++++.+++|+++.+|..++.+|...|+ +++|.+.|++..+
T Consensus 57 ~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~ 114 (145)
T d1zu2a1 57 IQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD 114 (145)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccc
Confidence 4556666666666777766666666666665443 4666666666654
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.20 E-value=0.00082 Score=57.63 Aligned_cols=126 Identities=12% Similarity=-0.014 Sum_probs=77.0
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCc-hHHHHHHHHHHHhcCCHH
Q 046312 306 LAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPM-RIHYHTMADILARAGHLK 384 (514)
Q Consensus 306 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~ 384 (514)
..+.|++++|+..+++.++.. +-|...+..+...++..|++++|...++...+. .|+ ...+..+...+...+..+
T Consensus 6 aL~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l---~P~~~~~~~~l~~ll~a~~~~~ 81 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKAAQARK 81 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHhccccH
Confidence 345688888888888887752 345667777888888888888888888888764 565 334444444444444444
Q ss_pred HHHHHHHhCC--CCCC-HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCch
Q 046312 385 EAYTFIMNMP--FQPN-PIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQN 438 (514)
Q Consensus 385 ~A~~~~~~~~--~~p~-~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 438 (514)
++..-..... ..|+ ...+......+...|+ .+.|.+.++.+.+..|..+..
T Consensus 82 ~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd---~~~A~~~~~~a~e~~p~~~~~ 135 (264)
T d1zbpa1 82 DFAQGAATAKVLGENEELTKSLVSFNLSMVSQD---YEQVSELALQIEELRQEKGFL 135 (264)
T ss_dssp HHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHCCCCCEE
T ss_pred HHHHHhhhhhcccCchHHHHHHHHHHHHHhCCC---HHHHHHHHHHHHhcCCCCCcc
Confidence 4333222211 2222 2333444455666777 777777777777777766543
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.20 E-value=0.00034 Score=54.06 Aligned_cols=43 Identities=12% Similarity=0.163 Sum_probs=31.1
Q ss_pred chHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 046312 418 DGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNVGL 467 (514)
Q Consensus 418 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 467 (514)
++.|.+.++++.+++|++...+..|... .+|.+++.+..+.|+
T Consensus 102 ~~~A~~~~~kal~l~P~~~~~~~~L~~~-------~ka~~~~~e~~k~~~ 144 (145)
T d1zu2a1 102 FDLATQFFQQAVDEQPDNTHYLKSLEMT-------AKAPQLHAEAYKQGL 144 (145)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHH-------HTHHHHHHHHHHSSS
T ss_pred HHHhhhhhhcccccCCCHHHHHHHHHHH-------HHHHHHHHHHHHHhc
Confidence 6779999999999999987655555554 456666666666554
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.18 E-value=0.00089 Score=52.36 Aligned_cols=88 Identities=13% Similarity=-0.048 Sum_probs=59.0
Q ss_pred HHHHhcCCHHHHHHHHHhCC----CCCC----------HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCC-----
Q 046312 375 DILARAGHLKEAYTFIMNMP----FQPN----------PIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRG----- 435 (514)
Q Consensus 375 ~~~~~~g~~~~A~~~~~~~~----~~p~----------~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~----- 435 (514)
..+.+.|++++|++.|++.. ..|+ ...|+.+..+|...|+ ++.+...++.+.++.|..
T Consensus 17 ~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~---~~~A~~~~~~al~~~~~~~~~~~ 93 (156)
T d2hr2a1 17 QRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRS---FDEALHSADKALHYFNRRGELNQ 93 (156)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHHCCTTS
T ss_pred HHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCc---cchhhHhhhhhhhcccccccccc
Confidence 33445566666666665552 1111 3456667777777777 777777777776653211
Q ss_pred ------CchHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 046312 436 ------SQNLVIVANKYAEVGMWEKVSNVRRFMKNV 465 (514)
Q Consensus 436 ------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 465 (514)
..++..++.+|...|++++|.+.|++..+.
T Consensus 94 ~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l 129 (156)
T d2hr2a1 94 DEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 129 (156)
T ss_dssp THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 125678899999999999999999998653
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=97.10 E-value=0.1 Score=48.04 Aligned_cols=80 Identities=6% Similarity=0.065 Sum_probs=40.5
Q ss_pred cCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCCCcchHH
Q 046312 344 AGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKEAYTFIMNMPFQP--NPIVLRALLSASSIHDAKYQDGVG 421 (514)
Q Consensus 344 ~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p--~~~~~~~l~~~~~~~~~~~~~~~a 421 (514)
.+..+.+...+...... ..+.......+....+.+++..+...+..+...| ...-.--+..++...|+ .+.|
T Consensus 265 ~~~~~~a~~~~~~~~~~---~~~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~---~~~A 338 (450)
T d1qsaa1 265 NDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGR---EAEA 338 (450)
T ss_dssp TTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTC---HHHH
T ss_pred cCchHHHHHHHHhhccc---ccchHHHHHHHHHHHHcCChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCC---hhhH
Confidence 44455555555555432 2233333334444455566666666666665222 12222334455666666 6666
Q ss_pred HHHHHHHH
Q 046312 422 NEVRRRLL 429 (514)
Q Consensus 422 ~~~~~~~~ 429 (514)
...+..+.
T Consensus 339 ~~~~~~~a 346 (450)
T d1qsaa1 339 KEILHQLM 346 (450)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 66666554
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.03 E-value=0.00071 Score=58.03 Aligned_cols=119 Identities=7% Similarity=-0.004 Sum_probs=72.2
Q ss_pred HHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCHHHH
Q 046312 104 YAWSDRPREAVWVFIDMKRRGIKPTEFTYPFVLKACAEISGLNEGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKRDA 183 (514)
Q Consensus 104 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A 183 (514)
..+.|++++|+..+++..+.. +-|...+..+...++..|++++|.+.++...+.. +-+...+..+..++...+..+++
T Consensus 6 aL~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~-P~~~~~~~~l~~ll~a~~~~~~a 83 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLF-PEYLPGASQLRHLVKAAQARKDF 83 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhccccHHH
Confidence 345788888888888887752 4455678888888888888888888888887763 22334444444444444444443
Q ss_pred HHHhhcc--C-CC-ChhhHHHHHHHHHhCCChhHHHHHHHHHHHC
Q 046312 184 CKVFDDM--C-ER-SVVSWNVIITVCVENLWLGEAVGYFVKMKDL 224 (514)
Q Consensus 184 ~~~~~~~--~-~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 224 (514)
..-.... . ++ +...+......+...|+.++|...++++.+.
T Consensus 84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 3322221 1 11 1223333445566677777777777776654
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=96.98 E-value=0.032 Score=39.97 Aligned_cols=141 Identities=14% Similarity=0.133 Sum_probs=103.7
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHhcCCHHH
Q 046312 306 LAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILARAGHLKE 385 (514)
Q Consensus 306 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 385 (514)
+.-.|..++..++..+.... .+..-|+.++.-....-+-+...++++.+-+.|.+.| +++...
T Consensus 12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~--------------C~Nlk~ 74 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDK--------------CQNLKS 74 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGG--------------CSCTHH
T ss_pred HHHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhhcCchh--------------hhcHHH
Confidence 56678999999999988863 4667788898888888888888888888876544433 344444
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 046312 386 AYTFIMNMPFQPNPIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKVSNVRRFMKNV 465 (514)
Q Consensus 386 A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 465 (514)
...-+-.+. .+....+..+......|. -+...++.+.+.+-+..++.....++.+|.+.|...++.+++.+..++
T Consensus 75 vv~C~~~~n--~~se~vdlALd~lv~~~k---kd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~ 149 (161)
T d1wy6a1 75 VVECGVINN--TLNEHVNKALDILVIQGK---RDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKK 149 (161)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHHHHTTC---HHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhcc---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHH
Confidence 444444443 244455666677788888 777777777766655555778889999999999999999999999999
Q ss_pred CCC
Q 046312 466 GLK 468 (514)
Q Consensus 466 ~~~ 468 (514)
|+.
T Consensus 150 G~K 152 (161)
T d1wy6a1 150 GEK 152 (161)
T ss_dssp TCH
T ss_pred hHH
Confidence 974
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.78 E-value=0.0024 Score=44.77 Aligned_cols=70 Identities=13% Similarity=0.060 Sum_probs=50.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCC--------CCCC-HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHH
Q 046312 371 HTMADILARAGHLKEAYTFIMNMP--------FQPN-PIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVI 441 (514)
Q Consensus 371 ~~li~~~~~~g~~~~A~~~~~~~~--------~~p~-~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 441 (514)
-.+...+.+.|++++|...|++.. ..++ ..++..|..++.+.|+ +++|...++++.+++|+++.++..
T Consensus 9 ~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~---~~~A~~~y~~aL~l~P~~~~a~~N 85 (95)
T d1tjca_ 9 FELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGD---LDKALLLTKKLLELDPEHQRANGN 85 (95)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCC---hHHHHHHHHHHHHhCcCCHHHHHH
Confidence 346666777777777777776652 1122 4667778888888888 888888888888888888776665
Q ss_pred HH
Q 046312 442 VA 443 (514)
Q Consensus 442 l~ 443 (514)
+.
T Consensus 86 l~ 87 (95)
T d1tjca_ 86 LK 87 (95)
T ss_dssp HH
T ss_pred HH
Confidence 53
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.58 E-value=0.0099 Score=46.02 Aligned_cols=62 Identities=11% Similarity=-0.010 Sum_probs=32.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCC--------CCCC-----HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCC
Q 046312 369 HYHTMADILARAGHLKEAYTFIMNMP--------FQPN-----PIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEP 433 (514)
Q Consensus 369 ~~~~li~~~~~~g~~~~A~~~~~~~~--------~~p~-----~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p 433 (514)
.|+.+..+|.+.|++++|.+.+++.. ..++ ...+..+..+|...|+ +++|...++++.++.|
T Consensus 57 ~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~---~eeA~~~~~~Al~l~~ 131 (156)
T d2hr2a1 57 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGR---GAEAMPEFKKVVEMIE 131 (156)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHH---HHHHHHHHHHHHHhhH
Confidence 34445555555555555554444431 1111 1234455566666666 6666666666666543
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.90 E-value=0.01 Score=41.37 Aligned_cols=65 Identities=9% Similarity=-0.088 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCC-------CchHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 046312 399 PIVLRALLSASSIHDAKYQDGVGNEVRRRLLELEPRG-------SQNLVIVANKYAEVGMWEKVSNVRRFMKNVG 466 (514)
Q Consensus 399 ~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 466 (514)
...+-.+...+...|+ ++.|...++++.++.|.+ ..++..|+.+|.+.|++++|.+.++++.+.+
T Consensus 5 addc~~lG~~~~~~g~---y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~ 76 (95)
T d1tjca_ 5 AEDSFELGKVAYTEAD---YYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (95)
T ss_dssp HHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC
Confidence 3344567888999999 999999999998876543 2467889999999999999999999998765
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=95.62 E-value=0.23 Score=35.50 Aligned_cols=141 Identities=11% Similarity=0.003 Sum_probs=81.5
Q ss_pred HHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHH
Q 046312 205 CVENLWLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALIDMYAKCGAVGCA 284 (514)
Q Consensus 205 ~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 284 (514)
+.-.|..++..+++.+.... .+..-|+.+|.-....-+-+...++++.+-+. .|. ...+++...
T Consensus 12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~---FDl----------s~C~Nlk~v 75 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSV 75 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHH
T ss_pred HHHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhh---cCc----------hhhhcHHHH
Confidence 34456666777776666653 24445555555444444444444444443221 111 112222222
Q ss_pred HHHHHhcCcCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCC
Q 046312 285 RLLFSRMEEINVWTWSAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIK 364 (514)
Q Consensus 285 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 364 (514)
...+-.+- .+...++..+.....+|+-++-.++++++.+.+ +|++.....+..+|.+.|+..++-+++.+.-++ |++
T Consensus 76 v~C~~~~n-~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~-G~K 152 (161)
T d1wy6a1 76 VECGVINN-TLNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKK-GEK 152 (161)
T ss_dssp HHHHHHTT-CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCH
T ss_pred HHHHHHhc-chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHH-hHH
Confidence 22222221 233445556777888888888888888876643 677777778888888888888888888888775 653
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=95.14 E-value=0.25 Score=36.31 Aligned_cols=46 Identities=20% Similarity=0.005 Sum_probs=22.1
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhC
Q 046312 210 WLGEAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERG 260 (514)
Q Consensus 210 ~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 260 (514)
++++|++.|++..+.|. +. .+..+. .....+.++|...++...+.|
T Consensus 8 d~~~A~~~~~kaa~~g~-~~--a~~~l~--~~~~~~~~~a~~~~~~aa~~g 53 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNE-MF--GCLSLV--SNSQINKQKLFQYLSKACELN 53 (133)
T ss_dssp HHHHHHHHHHHHHHTTC-TT--HHHHHH--TCTTSCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHCCC-hh--hhhhhc--cccccCHHHHHHHHhhhhccc
Confidence 45666666666666552 11 111121 122345555555555555544
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.96 E-value=0.058 Score=39.00 Aligned_cols=30 Identities=13% Similarity=0.025 Sum_probs=15.3
Q ss_pred HHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCC
Q 046312 404 ALLSASSIHDAKYQDGVGNEVRRRLLELEPRGS 436 (514)
Q Consensus 404 ~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 436 (514)
.|.-+|.+.|+ ++.|.+.++.+.+++|++.
T Consensus 78 ~Lav~yyklgd---y~~A~~~~~~~L~ieP~n~ 107 (124)
T d2pqrb1 78 YLTIGCYKLGE---YSMAKRYVDTLFEHERNNK 107 (124)
T ss_dssp HHHHHHHHHTC---HHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHhh---HHHHHHHHHHHHccCCCcH
Confidence 34444555555 5555555555555555543
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=94.83 E-value=0.23 Score=36.56 Aligned_cols=46 Identities=7% Similarity=0.026 Sum_probs=22.0
Q ss_pred CchHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhC
Q 046312 109 RPREAVWVFIDMKRRGIKPTEFTYPFVLKACAEISGLNEGMQVQANVTKSG 159 (514)
Q Consensus 109 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 159 (514)
++++|+++|++..+.| +...+..+. .....+.++|.+.+++..+.|
T Consensus 8 d~~~A~~~~~kaa~~g---~~~a~~~l~--~~~~~~~~~a~~~~~~aa~~g 53 (133)
T d1klxa_ 8 DLKKAIQYYVKACELN---EMFGCLSLV--SNSQINKQKLFQYLSKACELN 53 (133)
T ss_dssp HHHHHHHHHHHHHHTT---CTTHHHHHH--TCTTSCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHCC---Chhhhhhhc--cccccCHHHHHHHHhhhhccc
Confidence 4556666666665554 222222222 122345555555555555544
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=94.34 E-value=1.8 Score=39.24 Aligned_cols=351 Identities=9% Similarity=-0.040 Sum_probs=188.5
Q ss_pred HHhcccCCCCChHHHHHHHcccCCCCCcccHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCCch
Q 046312 67 VRFCTLSSSKNLTYARSILCNYVNDSVPIPWNNLIRGYAWSDRPREAVWVFIDMKRRGIKPTEFTYPFVLKACAEISGLN 146 (514)
Q Consensus 67 l~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~ 146 (514)
+..+. +.+++......+...+ .++..-.....+....|+...|...+..+-..|. .....+.
T Consensus 79 l~~L~--~~~~w~~~~~~~~~~p--~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~-~~p~~c~------------- 140 (450)
T d1qsaa1 79 VNELA--RREDWRGLLAFSPEKP--GTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK-SQPNACD------------- 140 (450)
T ss_dssp HHHHH--HTTCHHHHHHHCCSCC--SSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS-CCCTHHH-------------
T ss_pred HHHHH--hccCHHHHHHhccCCC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-CCchHHH-------------
Confidence 44445 5666666555443322 2333334555666667777777666665544431 1222222
Q ss_pred HHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCCHHHHHHHhhccCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCC
Q 046312 147 EGMQVQANVTKSGLDSDVYTNNNLVRFYGSCRRKRDACKVFDDMCERSVVSWNVIITVCVENLWLGEAVGYFVKMKDLGF 226 (514)
Q Consensus 147 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 226 (514)
.++..+...| ..+...+-.-+......|+...|..+...+...........+..... ...+.... ...
T Consensus 141 ---~l~~~~~~~~-~lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~---p~~~~~~~---~~~-- 208 (450)
T d1qsaa1 141 ---KLFSVWRASG-KQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANN---PNTVLTFA---RTT-- 208 (450)
T ss_dssp ---HHHHHHHHTT-CSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHC---GGGHHHHH---HHS--
T ss_pred ---HHHHHHHhcC-CCCHHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhC---hHhHHHHH---hcC--
Confidence 3333333333 23333344455556667888888888877765554555555554332 22222221 111
Q ss_pred CCCHHHHHHHHHHHhc--cCChHHHHHHHHHHHHhCCCCchhH---HHHHHHHHHhcCCHHHHHHHHHhcCc--CCHHHH
Q 046312 227 EPDETTMLVVLSACTE--LGNLSLGKWVHLQLIERGTVLNCQL---GTALIDMYAKCGAVGCARLLFSRMEE--INVWTW 299 (514)
Q Consensus 227 ~p~~~t~~~ll~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~ 299 (514)
.++......+..++.+ ..+.+.+..++.............. ...+...+...+..+.+..++..... .+....
T Consensus 209 ~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 288 (450)
T d1qsaa1 209 GATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLI 288 (450)
T ss_dssp CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHH
T ss_pred CCChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccchHHH
Confidence 2333333333333332 3567778777777766543222211 12222333345666677666655442 334433
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHh
Q 046312 300 SAMILGLAQHGYAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMADILAR 379 (514)
Q Consensus 300 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 379 (514)
.-.+......+++..+...+..|-.. ..-...-.-.+..++...|+.+.|..+|..+.. .++ .|.-|.. .+
T Consensus 289 ~w~~~~al~~~~~~~~~~~~~~l~~~-~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~----~~~--fYG~LAa--~~ 359 (450)
T d1qsaa1 289 ERRVRMALGTGDRRGLNTWLARLPME-AKEKDEWRYWQADLLLERGREAEAKEILHQLMQ----QRG--FYPMVAA--QR 359 (450)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHSCTT-GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----SCS--HHHHHHH--HH
T ss_pred HHHHHHHHHcCChHHHHHHHHhcCcc-cccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc----CCC--hHHHHHH--HH
Confidence 44555566778899988888877532 122234445567888889999999999998863 233 3443332 23
Q ss_pred cCCHHHHHHHHHhCCCCCC-HHH---HHHHHHHHHhcCCCCcchHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCHHHH
Q 046312 380 AGHLKEAYTFIMNMPFQPN-PIV---LRALLSASSIHDAKYQDGVGNEVRRRLLELEPRGSQNLVIVANKYAEVGMWEKV 455 (514)
Q Consensus 380 ~g~~~~A~~~~~~~~~~p~-~~~---~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 455 (514)
.|..-.. . ....+..+. ... -..-+..+...|. ...|...+..+.+.. ++.-...++....+.|.++.|
T Consensus 360 Lg~~~~~-~-~~~~~~~~~~~~~~~~~~~ra~~L~~~g~---~~~A~~e~~~l~~~~--~~~~~~~la~lA~~~g~~~~a 432 (450)
T d1qsaa1 360 IGEEYEL-K-IDKAPQNVDSALTQGPEMARVRELMYWNL---DNTARSEWANLVKSK--SKTEQAQLARYAFNNQWWDLS 432 (450)
T ss_dssp TTCCCCC-C-CCCCCSCCCCHHHHSHHHHHHHHHHHTTC---HHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTTCHHHH
T ss_pred cCCCCCC-C-cCCCCccHHHhhhcChHHHHHHHHHHcCC---chHHHHHHHHHHhCC--CHHHHHHHHHHHHHCCChhHH
Confidence 3321000 0 000111111 111 1123455677888 888988888776543 344577889999999999999
Q ss_pred HHHHHHHH
Q 046312 456 SNVRRFMK 463 (514)
Q Consensus 456 ~~~~~~m~ 463 (514)
+....+..
T Consensus 433 I~a~~~~~ 440 (450)
T d1qsaa1 433 VQATIAGK 440 (450)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHH
Confidence 98887764
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=89.87 E-value=0.98 Score=30.40 Aligned_cols=63 Identities=14% Similarity=0.136 Sum_probs=50.5
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhhCCCCchHHHHHHHH
Q 046312 311 YAEEALELFSNMKNSSISPNYVTFLGVLCACNHAGMVEDGYRYFHEMEHVHGIKPMRIHYHTMAD 375 (514)
Q Consensus 311 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 375 (514)
+.-++.+-+..+....+.|++....+.+++|-+.+++..|.++++.++.+. .++...|..+++
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~--~~~k~~y~yilq 83 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQ 83 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh--cCcHHHHHHHHH
Confidence 445666777777777889999999999999999999999999999998754 344567776664
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.60 E-value=5.7 Score=28.11 Aligned_cols=68 Identities=7% Similarity=-0.014 Sum_probs=40.9
Q ss_pred CCHHHHHHHHHHHhcc---CcHHHHHHHHHHHHHhhCCCC-c-hHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCH
Q 046312 329 PNYVTFLGVLCACNHA---GMVEDGYRYFHEMEHVHGIKP-M-RIHYHTMADILARAGHLKEAYTFIMNMP-FQPNP 399 (514)
Q Consensus 329 p~~~~~~~ll~~~~~~---~~~~~a~~~~~~~~~~~~~~p-~-~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~~ 399 (514)
|...|--....++.++ .+.++++.+++++.+. .| + ...+-.|.-+|.+.|++++|.+.++.+. +.|+.
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~---~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n 106 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE---AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 106 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc---CchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCc
Confidence 4444433344445443 4456777777777753 33 2 2455566677778888888888877775 55543
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=82.74 E-value=3.5 Score=27.64 Aligned_cols=59 Identities=12% Similarity=0.151 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHH
Q 046312 213 EAVGYFVKMKDLGFEPDETTMLVVLSACTELGNLSLGKWVHLQLIERGTVLNCQLGTALI 272 (514)
Q Consensus 213 ~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 272 (514)
++.+-++.+....+.|+.......+.+|.+.+++..|.++++.+.... ..+..+|.-++
T Consensus 24 e~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~-~~~k~~y~yil 82 (105)
T d1v54e_ 24 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 82 (105)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCcHHHHHHHH
Confidence 445555666666677888888888888888888888888887776553 22344555444
|