Citrus Sinensis ID: 046366

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------13
LMAKSRILAMAMLFLVMAATLMNMASQVNALMLYTRSPFFDVMFPMTEDPFRETPTSHVITLDIPRMKKDDVKIEVEENRVLREEVEGEKWHRAERPFDKVWRQFRMPMSADLDHVKAHLENGVLRIT
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccEEEcccEEEEEEEccccccccEEEEEEccEEEEEEEccccEEEEEEcccEEEEEEEccccccccccEEEEcccEEEEc
ccccccHHHHHHHHHHHHHccccccccccccccccccccccccEcccccccccccccEEEEEEccccccccEEEEEEcccEEEEEccccEEEEEEEccccEEEEEEccccccHHEEEEEEcccEEEEc
LMAKSRILAMAMLFLVMAATLMNMASQVNALMLytrspffdvmfpmtedpfretptshvitldiprmkkddvkiEVEENRVLReevegekwhraerpfDKVWRQfrmpmsadLDHVKAHLENGVLRIT
LMAKSRILAMAMLFLVMAATLMNMASQVNALMLYTRSPFFDVMFPMTedpfretptshvitldiprmkkddvkieveenrvlreevegekwhraerpfdkvWRQFRMPMSADLDHVKahlengvlrit
LMAKSRIlamamlflvmaatlmNMASQVNALMLYTRSPFFDVMFPMTEDPFRETPTSHVITLDIPRMKKDDVKIeveenrvlreevegeKWHRAERPFDKVWRQFRMPMSADLDHVKAHLENGVLRIT
******ILAMAMLFLVMAATLMNMASQVNALMLYTRSPFFDVMFPMTEDPFRETPTSHVITLDIPRMK**DVKIEVE**RVLR**V*GEKWHRAERPFDKVWRQFRMPMSADLDHV************
************LFLVMAATLMNMASQVNALMLYTRSPFFDVMFPMTEDPFRETPTSHVITLDIPRMKKDDVKIEVEEN************HRAERPFDKVWRQFRMPMSADLDHVKAHLENGVLRIT
LMAKSRILAMAMLFLVMAATLMNMASQVNALMLYTRSPFFDVMFPMTEDPFRETPTSHVITLDIPRMKKDDVKIEVEENRVLREEVEGEKWHRAERPFDKVWRQFRMPMSADLDHVKAHLENGVLRIT
****SRILAMAMLFLVMAATLMNMASQVNALMLYTRSPFFDVMFPMTEDPFRETPTSHVITLDIPRMKKDDVKIEVEENRVLREEVEGEKWHRAERPFDKVWRQFRMPMSADLDHVKAHLENGVLRIT
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
LMAKSRILAMAMLFLVMAATLMNMASQVNALMLYTRSPFFDVMFPMTEDPFRETPTSHVITLDIPRMKKDDVKIEVEENRVLREEVEGEKWHRAERPFDKVWRQFRMPMSADLDHVKAHLENGVLRIT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query128 2.2.26 [Sep-21-2011]
P19244197 22.7 kDa class IV heat sh N/A no 0.609 0.395 0.558 2e-22
P30236192 22.0 kDa class IV heat sh no no 0.609 0.406 0.558 6e-21
Q38806195 22.0 kDa heat shock prote yes no 0.609 0.4 0.546 3e-20
Q7XUW5215 23.2 kDa heat shock prote yes no 0.703 0.418 0.411 1e-17
P27879143 18.1 kDa class I heat sho N/A no 0.789 0.706 0.385 1e-15
P27880158 18.2 kDa class I heat sho N/A no 0.781 0.632 0.407 2e-15
Q53M11206 21.9 kDa heat shock prote no no 0.609 0.378 0.425 3e-15
P02519153 17.3 kDa class I heat sho no no 0.812 0.679 0.373 4e-15
P13853157 17.6 kDa class I heat sho no no 0.609 0.496 0.418 2e-14
Q943Q3150 16.6 kDa heat shock prote no no 0.609 0.52 0.438 3e-14
>sp|P19244|HSP41_PEA 22.7 kDa class IV heat shock protein OS=Pisum sativum GN=HSP22.7 PE=2 SV=1 Back     alignment and function desciption
 Score =  103 bits (258), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 48/86 (55%), Positives = 63/86 (73%), Gaps = 8/86 (9%)

Query: 51  FRETPTSHVITLDIPRMKKDDVKIEVEENRVLR--------EEVEGEKWHRAERPFDKVW 102
           ++ETP  HVI +D+P +KKDD+KIEVEENRVLR        E+ +G+ WHR ER + K W
Sbjct: 79  WKETPEGHVIMVDVPGLKKDDIKIEVEENRVLRVSGERKKEEDKKGDHWHRVERSYGKFW 138

Query: 103 RQFRMPMSADLDHVKAHLENGVLRIT 128
           RQF++P + DLD VKA +ENGVL +T
Sbjct: 139 RQFKLPQNVDLDSVKAKMENGVLTLT 164

Pisum sativum (taxid: 3888)
>sp|P30236|HSP41_SOYBN 22.0 kDa class IV heat shock protein OS=Glycine max GN=HSP22.0 PE=3 SV=1 Back     alignment and function description
>sp|Q38806|HSP22_ARATH 22.0 kDa heat shock protein OS=Arabidopsis thaliana GN=HSP22.0 PE=2 SV=1 Back     alignment and function description
>sp|Q7XUW5|HS232_ORYSJ 23.2 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP23.2 PE=2 SV=2 Back     alignment and function description
>sp|P27879|HSP11_MEDSA 18.1 kDa class I heat shock protein (Fragment) OS=Medicago sativa GN=HSP18.1 PE=2 SV=1 Back     alignment and function description
>sp|P27880|HSP12_MEDSA 18.2 kDa class I heat shock protein OS=Medicago sativa GN=HSP18.2 PE=2 SV=1 Back     alignment and function description
>sp|Q53M11|HS219_ORYSJ 21.9 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP21.9 PE=2 SV=1 Back     alignment and function description
>sp|P02519|HSP11_SOYBN 17.3 kDa class I heat shock protein OS=Glycine max GN=HSP17.3-B PE=3 SV=1 Back     alignment and function description
>sp|P13853|HS17C_ARATH 17.6 kDa class I heat shock protein 3 OS=Arabidopsis thaliana GN=HSP17.6C PE=2 SV=2 Back     alignment and function description
>sp|Q943Q3|HS166_ORYSJ 16.6 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP16.6 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query128
344190172193 heat shock protein 22 [Corylus heterophy 0.992 0.658 0.5 1e-34
255560519190 heat-shock protein, putative [Ricinus co 0.906 0.610 0.506 3e-33
297739445 284 unnamed protein product [Vitis vinifera] 0.960 0.433 0.465 4e-29
356550016198 PREDICTED: 22.7 kDa class IV heat shock 0.796 0.515 0.524 2e-23
449438367197 PREDICTED: 22.7 kDa class IV heat shock 0.882 0.573 0.457 5e-23
145203150193 small heat shock protein [Cyclamen persi 0.906 0.601 0.42 2e-22
326499221205 predicted protein [Hordeum vulgare subsp 0.867 0.541 0.442 3e-22
357504121194 class IV heat shock protein [Medicago tr 0.609 0.402 0.593 1e-21
351720985197 low molecular weight heat shock protein 0.781 0.507 0.5 3e-21
315932712200 HSP22.9 [Citrullus lanatus] 0.781 0.5 0.467 4e-21
>gi|344190172|gb|AEM97868.1| heat shock protein 22 [Corylus heterophylla] Back     alignment and taxonomy information
 Score =  150 bits (380), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 80/160 (50%), Positives = 97/160 (60%), Gaps = 33/160 (20%)

Query: 2   MAKSRILAMAMLFLVMAATLMNMASQVNALMLYTRSPFFDVMFPMTEDPFR--------- 52
           M K  I A  ++   +   +  MA+Q NALM YTR   +D++ P +EDP R         
Sbjct: 1   MVKPGINASMLVVAAVTVVIGLMATQANALMPYTRPSLWDILLPYSEDPLRILEQTPLTI 60

Query: 53  ---------------ETPTSHVITLDIPRMKKDDVKIEVEENRVLR---------EEVEG 88
                          ETPT HVI+LD+P MKKDD+KIEVEENRVLR         +EVEG
Sbjct: 61  PRGVETLTLAPSDWKETPTEHVISLDVPGMKKDDIKIEVEENRVLRISGERVGKNQEVEG 120

Query: 89  EKWHRAERPFDKVWRQFRMPMSADLDHVKAHLENGVLRIT 128
           E+WHRAER   K WRQFR+P +ADLDHVKA LE+GVLRIT
Sbjct: 121 ERWHRAERTNGKFWRQFRLPGNADLDHVKARLEDGVLRIT 160

Source: Corylus heterophylla

Species: Corylus heterophylla

Genus: Corylus

Family: Betulaceae

Order: Fagales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255560519|ref|XP_002521274.1| heat-shock protein, putative [Ricinus communis] gi|223539542|gb|EEF41130.1| heat-shock protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|297739445|emb|CBI29627.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356550016|ref|XP_003543386.1| PREDICTED: 22.7 kDa class IV heat shock protein-like [Glycine max] Back     alignment and taxonomy information
>gi|449438367|ref|XP_004136960.1| PREDICTED: 22.7 kDa class IV heat shock protein-like [Cucumis sativus] gi|449495657|ref|XP_004159906.1| PREDICTED: 22.7 kDa class IV heat shock protein-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|145203150|gb|ABP35941.1| small heat shock protein [Cyclamen persicum] Back     alignment and taxonomy information
>gi|326499221|dbj|BAK06101.1| predicted protein [Hordeum vulgare subsp. vulgare] gi|326533628|dbj|BAK05345.1| predicted protein [Hordeum vulgare subsp. vulgare] Back     alignment and taxonomy information
>gi|357504121|ref|XP_003622349.1| class IV heat shock protein [Medicago truncatula] gi|355497364|gb|AES78567.1| class IV heat shock protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|351720985|ref|NP_001235147.1| low molecular weight heat shock protein Hsp22.3 precursor [Glycine max] gi|710434|gb|AAB03097.1| Hsp22.3 [Glycine max] Back     alignment and taxonomy information
>gi|315932712|gb|ADU55786.1| HSP22.9 [Citrullus lanatus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query128
TAIR|locus:2122774195 ATHSP22.0 "AT4G10250" [Arabido 0.601 0.394 0.423 2.4e-12
TAIR|locus:2042977153 AT2G29500 "AT2G29500" [Arabido 0.609 0.509 0.360 2.8e-12
TAIR|locus:2075256156 HSP17.4 "heat shock protein 17 0.734 0.602 0.359 1.3e-11
TAIR|locus:2024862157 AT1G53540 [Arabidopsis thalian 0.718 0.585 0.346 2.8e-11
UNIPROTKB|P27777150 HSP16.9A "16.9 kDa class I hea 0.609 0.52 0.395 4.5e-11
UNIPROTKB|Q943E7149 HSP16.9C "16.9 kDa class I hea 0.609 0.523 0.383 5.8e-11
UNIPROTKB|Q943E6150 HSP16.9B "16.9 kDa class I hea 0.609 0.52 0.383 7.4e-11
UNIPROTKB|Q7XUW5215 HSP23.2 "23.2 kDa heat shock p 0.679 0.404 0.33 2e-10
TAIR|locus:2174269161 HSP18.2 "heat shock protein 18 0.601 0.478 0.364 3.2e-10
UNIPROTKB|Q53M11206 HSP21.9 "21.9 kDa heat shock p 0.609 0.378 0.329 5.2e-10
TAIR|locus:2122774 ATHSP22.0 "AT4G10250" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
 Identities = 36/85 (42%), Positives = 47/85 (55%)

Query:    51 FRETPTSHVITLDIPRMKKDDVKIXXXXXXXXXXXXXXXK--------WHRAERPFDKVW 102
             ++ET   H I LDIP +KKD+VKI               +        WHR ER + K W
Sbjct:    75 WKETAEGHEIMLDIPGLKKDEVKIEVEENGVLRVSGERKREEEKKGDQWHRVERSYGKFW 134

Query:   103 RQFRMPMSADLDHVKAHLENGVLRI 127
             RQF++P + D++ VKA LENGVL I
Sbjct:   135 RQFKLPDNVDMESVKAKLENGVLTI 159
GO:0003674 "molecular_function" evidence=ND
GO:0009408 "response to heat" evidence=IEP;ISS;RCA
GO:0009507 "chloroplast" evidence=ISM
GO:0006457 "protein folding" evidence=RCA
GO:0009644 "response to high light intensity" evidence=RCA
GO:0042542 "response to hydrogen peroxide" evidence=RCA
GO:0005783 "endoplasmic reticulum" evidence=IDA
TAIR|locus:2042977 AT2G29500 "AT2G29500" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2075256 HSP17.4 "heat shock protein 17.4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2024862 AT1G53540 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|P27777 HSP16.9A "16.9 kDa class I heat shock protein 1" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|Q943E7 HSP16.9C "16.9 kDa class I heat shock protein 3" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|Q943E6 HSP16.9B "16.9 kDa class I heat shock protein 2" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|Q7XUW5 HSP23.2 "23.2 kDa heat shock protein" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2174269 HSP18.2 "heat shock protein 18.2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q53M11 HSP21.9 "21.9 kDa heat shock protein" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00035360001
SubName- Full=Chromosome undetermined scaffold_77, whole genome shotgun sequence; (260 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query128
cd0647292 cd06472, ACD_ScHsp26_like, Alpha crystallin domain 7e-30
pfam00011101 pfam00011, HSP20, Hsp20/alpha crystallin family 1e-22
cd0646488 cd06464, ACD_sHsps-like, Alpha-crystallin domain ( 6e-20
cd0029880 cd00298, ACD_sHsps_p23-like, This domain family in 3e-14
COG0071146 COG0071, IbpA, Molecular chaperone (small heat sho 1e-13
cd0647193 cd06471, ACD_LpsHSP_like, Group of bacterial prote 1e-10
cd0647090 cd06470, ACD_IbpA-B_like, Alpha-crystallin domain 4e-08
cd0652683 cd06526, metazoan_ACD, Alpha-crystallin domain (AC 6e-04
>gnl|CDD|107229 cd06472, ACD_ScHsp26_like, Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins Back     alignment and domain information 
 Score =  102 bits (257), Expect = 7e-30
 Identities = 44/85 (51%), Positives = 58/85 (68%), Gaps = 8/85 (9%)

Query: 52  RETPTSHVITLDIPRMKKDDVKIEVEENRVLR--------EEVEGEKWHRAERPFDKVWR 103
           +ETP +HV   D+P +KK+DVK+EVE+ RVLR        EE +G+ WHR ER   +  R
Sbjct: 5   KETPEAHVFKADVPGVKKEDVKVEVEDGRVLRISGERKKEEEKKGDDWHRVERSSGRFVR 64

Query: 104 QFRMPMSADLDHVKAHLENGVLRIT 128
           +FR+P +AD D VKA LENGVL +T
Sbjct: 65  RFRLPENADADEVKAFLENGVLTVT 89

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative stress. Also belonging to this group is wheat HSP16.9 which differs in quaternary structure from the shell-type particles of ScHsp26, it assembles as a dodecameric double disc, with each disc organized as a trimer of dimers. Length = 92
>gnl|CDD|215655 pfam00011, HSP20, Hsp20/alpha crystallin family Back     alignment and domain information
>gnl|CDD|107221 cd06464, ACD_sHsps-like, Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps) Back     alignment and domain information
>gnl|CDD|107219 cd00298, ACD_sHsps_p23-like, This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins Back     alignment and domain information
>gnl|CDD|223149 COG0071, IbpA, Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|107228 cd06471, ACD_LpsHSP_like, Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18 Back     alignment and domain information
>gnl|CDD|107227 cd06470, ACD_IbpA-B_like, Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins Back     alignment and domain information
>gnl|CDD|107247 cd06526, metazoan_ACD, Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 128
cd0647292 ACD_ScHsp26_like Alpha crystallin domain (ACD) fou 99.89
PRK11597142 heat shock chaperone IbpB; Provisional 99.87
COG0071146 IbpA Molecular chaperone (small heat shock protein 99.87
cd0647193 ACD_LpsHSP_like Group of bacterial proteins contai 99.87
cd0647090 ACD_IbpA-B_like Alpha-crystallin domain (ACD) foun 99.86
PRK10743137 heat shock protein IbpA; Provisional 99.85
cd0647981 ACD_HspB7_like Alpha crystallin domain (ACD) found 99.84
cd0649786 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domai 99.84
cd0648287 ACD_HspB10 Alpha crystallin domain (ACD) found in 99.84
cd0647783 ACD_HspB3_Like Alpha crystallin domain (ACD) found 99.83
cd0647586 ACD_HspB1_like Alpha crystallin domain (ACD) found 99.83
cd0647683 ACD_HspB2_like Alpha crystallin domain (ACD) found 99.83
cd0647883 ACD_HspB4-5-6 Alpha-crystallin domain found in alp 99.83
PF00011102 HSP20: Hsp20/alpha crystallin family This prints e 99.82
cd0649884 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domai 99.82
cd0648187 ACD_HspB9_like Alpha crystallin domain (ACD) found 99.81
cd0652683 metazoan_ACD Alpha-crystallin domain (ACD) of meta 99.79
cd0646488 ACD_sHsps-like Alpha-crystallin domain (ACD) of al 99.79
cd0648091 ACD_HspB8_like Alpha-crystallin domain (ACD) found 99.66
cd0029880 ACD_sHsps_p23-like This domain family includes the 99.46
KOG0710196 consensus Molecular chaperone (small heat-shock pr 99.45
KOG3591173 consensus Alpha crystallins [Posttranslational mod 99.38
cd0646978 p23_DYX1C1_like p23_like domain found in proteins 99.23
cd0646384 p23_like Proteins containing this p23_like domain 98.93
PF05455177 GvpH: GvpH; InterPro: IPR008633 This family consis 98.92
cd0646684 p23_CS_SGT1_like p23_like domain similar to the C- 98.61
PF08190328 PIH1: pre-RNA processing PIH1/Nop17 97.95
PF0496979 CS: CS domain; InterPro: IPR017447 The function of 97.88
cd06465108 p23_hB-ind1_like p23_like domain found in human (h 97.39
cd0648984 p23_CS_hSgt1_like p23_like domain similar to the C 97.3
cd0646785 p23_NUDC_like p23_like domain of NUD (nuclear dist 97.24
cd0649385 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear 97.12
cd0646892 p23_CacyBP p23_like domain found in proteins simil 96.93
cd0648887 p23_melusin_like p23_like domain similar to the C- 96.72
cd0649493 p23_NUDCD2_like p23-like NUD (nuclear distribution 96.47
cd0649287 p23_mNUDC_like p23-like NUD (nuclear distribution) 95.85
cd06495102 p23_NUDCD3_like p23-like NUD (nuclear distribution 95.02
PLN03088 356 SGT1, suppressor of G2 allele of SKP1; Provisional 94.26
KOG1309 196 consensus Suppressor of G2 allele of skp1 [Signal 91.29
cd00237106 p23 p23 binds heat shock protein (Hsp)90 and parti 90.1
PF13349166 DUF4097: Domain of unknown function (DUF4097) 87.63
cd0648287 ACD_HspB10 Alpha crystallin domain (ACD) found in 85.44
cd0647683 ACD_HspB2_like Alpha crystallin domain (ACD) found 84.72
cd0649786 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domai 83.53
cd0647883 ACD_HspB4-5-6 Alpha-crystallin domain found in alp 82.77
cd0647783 ACD_HspB3_Like Alpha crystallin domain (ACD) found 82.64
cd0647090 ACD_IbpA-B_like Alpha-crystallin domain (ACD) foun 82.04
cd0649087 p23_NCB5OR p23_like domain found in NAD(P)H cytoch 81.48
cd0647193 ACD_LpsHSP_like Group of bacterial proteins contai 81.06
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins Back     alignment and domain information 
Probab=99.89  E-value=7.7e-23  Score=135.94  Aligned_cols=79  Identities=51%  Similarity=0.806  Sum_probs=70.7

Q ss_pred             CCccccCCeEEEEEEeCCCCCCceEEEEeCC-EEEEE-------eecCceEEEEeeccceEEEEEECCCCccccceEEEE
Q 046366           49 DPFRETPTSHVITLDIPRMKKDDVKIEVEEN-RVLRE-------EVEGEKWHRAERPFDKVWRQFRMPMSADLDHVKAHL  120 (128)
Q Consensus        49 d~~~E~~~~~~i~~dlPGv~kedI~V~v~~~-~l~i~-------~~~~~~~~~~Er~~g~F~R~~~LP~~vd~~~I~A~~  120 (128)
                      |.+ |++++|+|.++|||++||+|+|+++++ .|.|.       ..++.+++++|+.+|.|.|+|+||.+|+.++|+|+|
T Consensus         3 dv~-E~~~~~~i~~~lPGv~~edi~i~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~v~~~~i~A~~   81 (92)
T cd06472           3 DWK-ETPEAHVFKADVPGVKKEDVKVEVEDGRVLRISGERKKEEEKKGDDWHRVERSSGRFVRRFRLPENADADEVKAFL   81 (92)
T ss_pred             cEE-EcCCeEEEEEECCCCChHhEEEEEeCCCEEEEEEEecccccccCCCEEEEEEeccEEEEEEECCCCCCHHHCEEEE
Confidence            444 999999999999999999999999975 67772       234567899999999999999999999999999999


Q ss_pred             eCCEEEEC
Q 046366          121 ENGVLRIT  128 (128)
Q Consensus       121 ~nGvL~It  128 (128)
                      +||+|+|+
T Consensus        82 ~nGvL~I~   89 (92)
T cd06472          82 ENGVLTVT   89 (92)
T ss_pred             ECCEEEEE
Confidence            99999985

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
>PRK11597 heat shock chaperone IbpB; Provisional Back     alignment and domain information
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18 Back     alignment and domain information
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins Back     alignment and domain information
>PRK10743 heat shock protein IbpA; Provisional Back     alignment and domain information
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins Back     alignment and domain information
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa) Back     alignment and domain information
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins Back     alignment and domain information
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins Back     alignment and domain information
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins Back     alignment and domain information
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins Back     alignment and domain information
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20 Back     alignment and domain information
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry Back     alignment and domain information
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa) Back     alignment and domain information
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins Back     alignment and domain information
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps) Back     alignment and domain information
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps) Back     alignment and domain information
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21 Back     alignment and domain information
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins Back     alignment and domain information
>KOG0710 consensus Molecular chaperone (small heat-shock protein Hsp26/Hsp42) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1 Back     alignment and domain information
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1 Back     alignment and domain information
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [] Back     alignment and domain information
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1) Back     alignment and domain information
>PF08190 PIH1: pre-RNA processing PIH1/Nop17 Back     alignment and domain information
>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown Back     alignment and domain information
>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins Back     alignment and domain information
>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins Back     alignment and domain information
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins Back     alignment and domain information
>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins Back     alignment and domain information
>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP) Back     alignment and domain information
>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins Back     alignment and domain information
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins Back     alignment and domain information
>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins Back     alignment and domain information
>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins Back     alignment and domain information
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional Back     alignment and domain information
>KOG1309 consensus Suppressor of G2 allele of skp1 [Signal transduction mechanisms] Back     alignment and domain information
>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor Back     alignment and domain information
>PF13349 DUF4097: Domain of unknown function (DUF4097) Back     alignment and domain information
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins Back     alignment and domain information
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins Back     alignment and domain information
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa) Back     alignment and domain information
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20 Back     alignment and domain information
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins Back     alignment and domain information
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins Back     alignment and domain information
>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins Back     alignment and domain information
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query128
2byu_A101 Negative Stain Em Reconstruction Of M.Tuberculosis 5e-07
1gme_A151 Crystal Structure And Assembly Of An Eukaryotic Sma 5e-07
2h50_A93 Multiple Distinct Assemblies Reveal Conformational 6e-07
>pdb|2BYU|A Chain A, Negative Stain Em Reconstruction Of M.Tuberculosis Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer Length = 101 Back     alignment and structure 
Iteration: 1

 Score = 49.7 bits (117), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 40/86 (46%), Gaps = 8/86 (9%)
Query: 51  FRETPTSHVITLDIP--------RMKKDDVKIXXXXXXXXXXXXXXXKWHRAERPFDKVW 102
           ++ETP +HV   D+P           +D   +               KWHR ER   K  
Sbjct: 6   WKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFV 65
Query: 103 RQFRMPMSADLDHVKAHLENGVLRIT 128
           R+FR+   A ++ VKA LENGVL +T
Sbjct: 66  RRFRLLEDAKVEEVKAGLENGVLTVT 91
>pdb|1GME|A Chain A, Crystal Structure And Assembly Of An Eukaryotic Small Heat Shock Protein Length = 151 Back     alignment and structure
>pdb|2H50|A Chain A, Multiple Distinct Assemblies Reveal Conformational Flexibility In The Small Heat Shock Protein Hsp26 Length = 93 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query128
1gme_A151 Heat shock protein 16.9B; small heat shock protein 6e-27
3gla_A100 Low molecular weight heat shock protein; HSPA, SHP 1e-26
3aab_A123 Putative uncharacterized protein ST1653; alpha-cry 7e-21
4eld_A161 MJ16.5-P1, small heat shock protein HSP16.5; chape 8e-19
3q9p_A85 Heat shock protein beta-1; alpha-crystallin domain 1e-13
2wj5_A101 Heat shock protein beta-6; chaperone, disulfide bo 1e-13
3l1e_A106 Alpha-crystallin A chain; lens transparency, polyd 2e-12
2y1y_A90 Alpha-crystallin B chain,; small heat shock protei 1e-11
2klr_A175 Alpha-crystallin B chain; protein, dimer, oligomer 2e-09
2bol_A314 TSP36, small heat shock protein; A-crystallin, mol 3e-07
2bol_A 314 TSP36, small heat shock protein; A-crystallin, mol 4e-06
>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone, alpha-crystallin; 2.70A {Triticum aestivum} SCOP: b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A Length = 151 Back     alignment and structure
 Score = 96.6 bits (241), Expect = 6e-27
 Identities = 45/131 (34%), Positives = 62/131 (47%), Gaps = 35/131 (26%)

Query: 33  LYTRSPFFDVMFPMTEDPFR---------------------------ETPTSHVITLDIP 65
           +  RS  FD    +  DPF                            ETP +HV   D+P
Sbjct: 3   IVRRSNVFDPFADLWADPFDTFRSIVPAISGGGSETAAFANARMDWKETPEAHVFKADLP 62

Query: 66  RMKKDDVKIEVEENRVLR--------EEVEGEKWHRAERPFDKVWRQFRMPMSADLDHVK 117
            +KK++VK+EVE+  VL         +E + +KWHR ER   K  R+FR+   A ++ VK
Sbjct: 63  GVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVK 122

Query: 118 AHLENGVLRIT 128
           A LENGVL +T
Sbjct: 123 AGLENGVLTVT 133
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high resolution, stress response, chaperone; 1.64A {Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A Length = 100 Back     alignment and structure
>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain, chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A Length = 123 Back     alignment and structure
>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A {Methanocaldococcus jannaschii} PDB: 1shs_A Length = 161 Back     alignment and structure
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone, charcot-marie-tooth DISE neuronopathy, IG-like fold, stress response; 2.00A {Homo sapiens} PDB: 3q9q_A Length = 85 Back     alignment and structure
>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress response; 1.12A {Rattus norvegicus} Length = 101 Back     alignment and structure
>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity, protein aggregation, CRYS eye lens protein, chaperone; 1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A Length = 106 Back     alignment and structure
>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone, stress protein, eye LEN protein, cataract; HET: MSE; 2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A Length = 90 Back     alignment and structure
>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity, intermolecular INTE chaperone, SHSP, human, small heat-shock protein, cataract; NMR {Homo sapiens} PDB: 2ygd_A Length = 175 Back     alignment and structure
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata} Length = 314 Back     alignment and structure
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata} Length = 314 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query128
3gla_A100 Low molecular weight heat shock protein; HSPA, SHP 99.91
4fei_A102 Heat shock protein-related protein; stress respons 99.9
3q9p_A85 Heat shock protein beta-1; alpha-crystallin domain 99.86
4eld_A161 MJ16.5-P1, small heat shock protein HSP16.5; chape 99.86
1gme_A151 Heat shock protein 16.9B; small heat shock protein 99.86
3aab_A123 Putative uncharacterized protein ST1653; alpha-cry 99.86
2wj5_A101 Heat shock protein beta-6; chaperone, disulfide bo 99.83
3l1e_A106 Alpha-crystallin A chain; lens transparency, polyd 99.82
2y1y_A90 Alpha-crystallin B chain,; small heat shock protei 99.82
2bol_A314 TSP36, small heat shock protein; A-crystallin, mol 99.79
2klr_A175 Alpha-crystallin B chain; protein, dimer, oligomer 99.77
2bol_A 314 TSP36, small heat shock protein; A-crystallin, mol 99.72
2xcm_C92 SGT1-like protein, cytosolic heat shock protein 90 98.61
1rl1_A114 Suppressor of G2 allele of SKP1 homolog; beta sand 98.61
3igf_A374 ALL4481 protein; two-domained protein consisting o 98.22
2k8q_A134 Protein SHQ1; beta-sandwich, CS domain, nucleus, s 97.21
1x5m_A127 Calcyclin-binding protein; CS domain, structural g 97.03
2o30_A131 Nuclear movement protein; MCSG, structural genomic 96.82
3eud_A115 Protein SHQ1; CS domain HSP20-like domain SHQ1 H/A 96.79
1wh0_A134 Ubiquitin carboxyl-terminal hydrolase 19; USP, CS 96.79
1wgv_A124 KIAA1068 protein; CS domain, HSP20-like fold, stru 96.76
3qor_A121 Nuclear migration protein NUDC; beta-sandwich, cha 96.67
1wfi_A131 Nuclear distribution gene C homolog; NUDC, riken s 96.53
2rh0_A157 NUDC domain-containing protein 2; 13542905, nuclea 96.39
1ejf_A125 Progesterone receptor P23; chaperone, CO-chaperone 95.58
2cg9_X134 CO-chaperone protein SBA1; chaperone complex, HSP9 94.75
2kmw_A150 Uncharacterized protein AT3G03773; protein structu 92.66
3q9p_A85 Heat shock protein beta-1; alpha-crystallin domain 87.68
2y1y_A90 Alpha-crystallin B chain,; small heat shock protei 84.14
3gla_A100 Low molecular weight heat shock protein; HSPA, SHP 83.5
3l1e_A106 Alpha-crystallin A chain; lens transparency, polyd 82.65
2wj5_A101 Heat shock protein beta-6; chaperone, disulfide bo 82.06
4fei_A102 Heat shock protein-related protein; stress respons 81.05
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high resolution, stress response, chaperone; 1.64A {Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A Back     alignment and structure
Probab=99.91  E-value=3.2e-24  Score=143.19  Aligned_cols=85  Identities=28%  Similarity=0.462  Sum_probs=75.8

Q ss_pred             ccCCCCCCCccccCCeEEEEEEeCCCCCCceEEEEeCCEEEEE-------eecCceEEEEeeccceEEEEEECCCCcccc
Q 046366           42 VMFPMTEDPFRETPTSHVITLDIPRMKKDDVKIEVEENRVLRE-------EVEGEKWHRAERPFDKVWRQFRMPMSADLD  114 (128)
Q Consensus        42 ~~~p~~~d~~~E~~~~~~i~~dlPGv~kedI~V~v~~~~l~i~-------~~~~~~~~~~Er~~g~F~R~~~LP~~vd~~  114 (128)
                      .|.| ..|.+ |++++|+|.++|||+++++|+|+++++.|.|.       ..++.+|+++||.+|.|.|+|.||.+||.+
T Consensus         2 ~~~P-~~di~-e~~~~~~v~~~lPG~~~edi~v~~~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~~   79 (100)
T 3gla_A            2 QWVP-RVDIK-EEVNHFVLYADLPGIDPSQIEVQMDKGILSIRGERKSESSTETERFSRIERRYGSFHRRFALPDSADAD   79 (100)
T ss_dssp             CSCC-CEEEE-ECSSEEEEEEECTTSCGGGCEEEEETTEEEEEEEECCGGGSSGGGEEEECCCCEEEEEEEECCTTBCTT
T ss_pred             CccC-cEEEE-ECCCEEEEEEECCCCCHHHEEEEEECCEEEEEEEEcCcCccCCccEEEEeecceEEEEEEECCCCcChH
Confidence            3566 45656 99999999999999999999999999999992       124567999999999999999999999999


Q ss_pred             ceEEEEeCCEEEEC
Q 046366          115 HVKAHLENGVLRIT  128 (128)
Q Consensus       115 ~I~A~~~nGvL~It  128 (128)
                      +|+|+|+||+|+|+
T Consensus        80 ~i~A~~~~GvL~I~   93 (100)
T 3gla_A           80 GITAAGRNGVLEIR   93 (100)
T ss_dssp             SCEEEEETTEEEEE
T ss_pred             HeEEEEeCCEEEEE
Confidence            99999999999985
>4fei_A Heat shock protein-related protein; stress response, alpha-crystallin domain fold, aggregates, C chaperone; 2.40A {Deinococcus radiodurans} Back     alignment and structure
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone, charcot-marie-tooth DISE neuronopathy, IG-like fold, stress response; 2.00A {Homo sapiens} PDB: 3q9q_A Back     alignment and structure
>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A {Methanocaldococcus jannaschii} PDB: 1shs_A Back     alignment and structure
>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone, alpha-crystallin; 2.70A {Triticum aestivum} SCOP: b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A Back     alignment and structure
>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain, chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A Back     alignment and structure
>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress response; 1.12A {Rattus norvegicus} Back     alignment and structure
>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity, protein aggregation, CRYS eye lens protein, chaperone; 1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A Back     alignment and structure
>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone, stress protein, eye LEN protein, cataract; HET: MSE; 2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A Back     alignment and structure
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata} Back     alignment and structure
>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity, intermolecular INTE chaperone, SHSP, human, small heat-shock protein, cataract; NMR {Homo sapiens} PDB: 2ygd_A Back     alignment and structure
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata} Back     alignment and structure
>2xcm_C SGT1-like protein, cytosolic heat shock protein 90; chaperone-protein binding complex, stress response; HET: ADP; 2.20A {Arabidopsis thaliana} PDB: 2jki_S* Back     alignment and structure
>1rl1_A Suppressor of G2 allele of SKP1 homolog; beta sandwich, 7 beta strands, similar to P23, lacking LAST beta strand SEEN in P23, protein degradation; NMR {Homo sapiens} SCOP: b.15.1.3 Back     alignment and structure
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP} Back     alignment and structure
>2k8q_A Protein SHQ1; beta-sandwich, CS domain, nucleus, structural protein; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>1x5m_A Calcyclin-binding protein; CS domain, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2o30_A Nuclear movement protein; MCSG, structural genomics, PSI-2, structure initiative; 1.66A {Encephalitozoon cuniculi} Back     alignment and structure
>3eud_A Protein SHQ1; CS domain HSP20-like domain SHQ1 H/ACA snoRNP ribosome biogenesis, nucleus, nuclear protein; HET: MSE; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>1wh0_A Ubiquitin carboxyl-terminal hydrolase 19; USP, CS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.15.1.3 Back     alignment and structure
>1wgv_A KIAA1068 protein; CS domain, HSP20-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.15.1.4 Back     alignment and structure
>3qor_A Nuclear migration protein NUDC; beta-sandwich, chaperone, protein cell cycle; HET: OCS; 1.75A {Homo sapiens} PDB: 3qor_B* 2cr0_A Back     alignment and structure
>1wfi_A Nuclear distribution gene C homolog; NUDC, riken structural genomics/proteomics initiative, RSGI, structural genomics, transport protein; NMR {Mus musculus} SCOP: b.15.1.4 Back     alignment and structure
>2rh0_A NUDC domain-containing protein 2; 13542905, nuclear movement protein, structural genomics, joint center for structural genomics, JCSG; 1.95A {Mus musculus} Back     alignment and structure
>1ejf_A Progesterone receptor P23; chaperone, CO-chaperone, beta-sandwich; 2.49A {Homo sapiens} SCOP: b.15.1.2 Back     alignment and structure
>2cg9_X CO-chaperone protein SBA1; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae} Back     alignment and structure
>2kmw_A Uncharacterized protein AT3G03773; protein structure initiative, center for eukaryotic structural genomics, CESG, structural genomics; NMR {Arabidopsis thaliana} Back     alignment and structure
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone, charcot-marie-tooth DISE neuronopathy, IG-like fold, stress response; 2.00A {Homo sapiens} PDB: 3q9q_A Back     alignment and structure
>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone, stress protein, eye LEN protein, cataract; HET: MSE; 2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A Back     alignment and structure
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high resolution, stress response, chaperone; 1.64A {Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A Back     alignment and structure
>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity, protein aggregation, CRYS eye lens protein, chaperone; 1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A Back     alignment and structure
>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress response; 1.12A {Rattus norvegicus} Back     alignment and structure
>4fei_A Heat shock protein-related protein; stress response, alpha-crystallin domain fold, aggregates, C chaperone; 2.40A {Deinococcus radiodurans} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 128
d1shsa_115 b.15.1.1 (A:) Small heat shock protein {Archaeon M 2e-13
d1gmea_150 b.15.1.1 (A:) Small heat shock protein {Wheat (Tri 3e-12
>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 115 Back     information, alignment and structure

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: HSP20
domain: Small heat shock protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 59.7 bits (144), Expect = 2e-13
 Identities = 12/85 (14%), Positives = 31/85 (36%), Gaps = 8/85 (9%)

Query: 52  RETPTSHVITLDIPRMKKDDVKIEVEENRVL--------REEVEGEKWHRAERPFDKVWR 103
            E      +   +P + K+D+ +    + +                  +      ++++R
Sbjct: 16  IEGDQHIKVIAWLPGVNKEDIILNAVGDTLEIRAKRSPLMITESERIIYSEIPEEEEIYR 75

Query: 104 QFRMPMSADLDHVKAHLENGVLRIT 128
             ++P +   ++  A  ENGVL + 
Sbjct: 76  TIKLPATVKEENASAKFENGVLSVI 100
>d1gmea_ b.15.1.1 (A:) Small heat shock protein {Wheat (Triticum aestivum) [TaxId: 4565]} Length = 150 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query128
d1gmea_150 Small heat shock protein {Wheat (Triticum aestivum 99.89
d1shsa_115 Small heat shock protein {Archaeon Methanococcus j 99.84
d1rl1a_92 Suppressor of G2 allele of skp1 homolog, gst1 {Hum 97.83
d1wh0a_134 Ubiquitin carboxyl-terminal hydrolase 19, USP19 {H 96.28
d1ejfa_110 Co-chaperone p23 {Human (Homo sapiens) [TaxId: 960 96.0
d1wgva_124 NudC domain containing protein 3, NUDCD3 (KIAA1068 95.95
d1wfia_131 Nuclear migration protein nudC {Mouse (Mus musculu 95.8
>d1gmea_ b.15.1.1 (A:) Small heat shock protein {Wheat (Triticum aestivum) [TaxId: 4565]} Back     information, alignment and structure
class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: HSP20
domain: Small heat shock protein
species: Wheat (Triticum aestivum) [TaxId: 4565]

Probab=99.89  E-value=7.5e-24  Score=149.44  Aligned_cols=77  Identities=48%  Similarity=0.802  Sum_probs=69.3

Q ss_pred             cccCCeEEEEEEeCCCCCCceEEEEeCCEE-EE-------EeecCceEEEEeeccceEEEEEECCCCccccceEEEEeCC
Q 046366           52 RETPTSHVITLDIPRMKKDDVKIEVEENRV-LR-------EEVEGEKWHRAERPFDKVWRQFRMPMSADLDHVKAHLENG  123 (128)
Q Consensus        52 ~E~~~~~~i~~dlPGv~kedI~V~v~~~~l-~i-------~~~~~~~~~~~Er~~g~F~R~~~LP~~vd~~~I~A~~~nG  123 (128)
                      .|++++|+|+++|||++|+||+|+++++.+ +|       .+.++..++.+|+.+|.|+|+|.||.+||.++|+|+|+||
T Consensus        48 ~e~~~~~~i~~~lPG~~~edi~v~v~~~~~l~i~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A~~~nG  127 (150)
T d1gmea_          48 KETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAGLENG  127 (150)
T ss_dssp             EECSSEEEEEEECTTCCGGGEEEEEETTTEEEEEECCCCCCCCTTCEEEECCCCCCCEEEEEECSSCCCGGGCEEEEETT
T ss_pred             EECCCEEEEEEEeCCCccCCEEEEEEEccceeEEEEEecccccccceeeeeeeccceEEEEEECCCCeeeceeEEEEECC
Confidence            499999999999999999999999997654 45       2345678999999999999999999999999999999999


Q ss_pred             EEEEC
Q 046366          124 VLRIT  128 (128)
Q Consensus       124 vL~It  128 (128)
                      +|+|+
T Consensus       128 vL~I~  132 (150)
T d1gmea_         128 VLTVT  132 (150)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99995
>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1rl1a_ b.15.1.3 (A:) Suppressor of G2 allele of skp1 homolog, gst1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wh0a_ b.15.1.3 (A:) Ubiquitin carboxyl-terminal hydrolase 19, USP19 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ejfa_ b.15.1.2 (A:) Co-chaperone p23 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wgva_ b.15.1.4 (A:) NudC domain containing protein 3, NUDCD3 (KIAA1068) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wfia_ b.15.1.4 (A:) Nuclear migration protein nudC {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure