Citrus Sinensis ID: 046367

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260
Protein Sequence
GRLAPGLRSFHVGGPPEASTEANVSHGKEKQASVELPLHWSEWQLLDSILPTGGFAHSFGLEAAIQARLISSPDDLRTYVIHILENTGSLLLPFVCTATTSPDLETWHKLDRMLDATLTNEVSRKASTAQGSALLRVAASVFTEVPSLKKMREISLNFGDVAFHHAPLFGIICGLLGLHRGTSQRAYMFITLRDIISAATRLNLVGPLGAAVLQHQIAFVAEAMLKKWKDRAVEEACQTSPLLDTVQGCHAYLFSRLFCS
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHcccHHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccHHHccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHccccHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
grlapglrsfhvggppeasteanvshgkekqasvelplhwsewqlldsilptggfahsFGLEAAIQARLISSPDDLRTYVIHILENtgslllpfvctattspdletwHKLDRMLDATLTNEVSRKASTAQGSALLRVAASVFTEVPSLKKMREISLNfgdvafhhapLFGIICGllglhrgtsqRAYMFITLRDIISAATRLNLVGPLGAAVLQHQIAFVAEAMLKKWKDRAVEeacqtsplldtvQGCHAYLFSRLFCS
Flexible Loop (DISEMBL)
grlapglrsfhvggppeasteanvSHGKEKQASVELPLHWSEWQLLDSILPTGGFAHSFGLEAAIQARLISSPDDLRTYVIHILEntgslllpFVCTATTSPDLETWHKLDRMLDATLTNEVSRKASTAQGSALLRVAASVFTEVPSLKKMREISLNFGDVAFHHAPLFGIICGLLGLHRGTSQRAYMFITLRDIISAATRLNLVGPLGAAVLQHQIAFVAEAMLKKWKDRAVEEACQtsplldtvqGCHAYLFSRLFCS
Low Complexity Region (SEG)
GRLAPGLRSFHVGGPPEASTEANVSHGKEKQASVELPLHWSEWQLLDSILPTGGFAHSFGLEAAIQARLISSPDDLRTYVIHILENTGSLLLPFVCTATTSPDLETWHKLDRMLDATLTNEVSRKASTAQGSALLRVAASVFTEVPSLKKMREISLNFGDVAFHHAPLFGIICGLLGLHRGTSQRAYMFITLRDIISAATRLNLVGPLGAAVLQHQIAFVAEAMLKKWKDRAVEEACQTSPLLDTVQGCHAYLFSRLFCS
Disordered region (IsUnstruct)
*********************************VELPLHWSEWQLLDSILPTGGFAHSFGLEAAIQARLISSPDDLRTYVIHILENTGSLLLPFVCTATTSPDLETWHKLDRMLDATLTNE*********GSALLRVAASVFTEVPSLKKMREISLNFGDVAFHHAPLFGIICGLLGLHRGTSQRAYMFITLRDIISAATRLNLVGPLGAAVLQHQIAFVAEAMLKKWKDRAVEEACQTSPLLDTVQGCHAYLFSRLFC*
Disordered Region (DISOPRED)
***************************************WSEWQLLDSILPTGGFAHSFGLEAAIQARLISSPDDLRTYVIHILENTGSLLLPFVCTATTSPDLETWHKLDRMLDATLTNEVSRKASTAQGSALLRVAASVFTEVPSLKKMREISLNFGDVAFHHAPLFGIICGLLGLHRGTSQRAYMFITLRDIISAATRLNLVGPLGAAVLQHQIAFVAEAMLKKWKDRAVEEACQTSPLLDTVQGCHAYLFSRLFCS
Disordered Region (DISEMBL)
GRLAPGLRSFHVGGP*****************SVELPLHWSEWQLLDSILPTGGFAHSFGLEAAIQARLISSPDDLRTYVIHILENTGSLLLPFVCTATTSPDLETWHKLDRMLDATLTNEVSRKASTAQGSALLRVAASVFTEVPSLKKMREISLNFGDVAFHHAPLFGIICGLLGLHRGTSQRAYMFITLRDIISAATRLNLVGPLGAAVLQHQIAFVAEAMLKKWKDRAVEEACQTSPLLDTVQGCHAYLFSRLFCS
Disordered Region (DISPRO)
*******************************ASVELPLHWSEWQLLDSILPTGGFAHSFGLEAAIQARLISSPDDLRTYVIHILENTGSLLLPFVCTATTSPDLETWHKLDRMLDATLTNEVSRKASTAQGSALLRVAASVFTEVPSLKKMREISLNFGDVAFHHAPLFGIICGLLGLHRGTSQRAYMFITLRDIISAATRLNLVGPLGAAVLQHQIAFVAEAMLKKWKDRAVEEACQTSPLLDTVQGCHAYLFSRLFCS
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
GRLAPGLRSFHVGGPPEASTEANVSHGKEKQASVELPLHWSEWQLLDSILPTGGFAHSFGLEAAIQARLISSPDDLRTYVIHILENTGSLLLPFVCTATTSPDLETWHKLDRMLDATLTNEVSRKASTAQGSALLRVAASVFTEVPSLKKMREISLNFGDVAFHHAPLFGIICGLLGLHRGTSQRAYMFITLRDIISAATRLNLVGPLGAAVLQHQIAFVAEAMLKKWKDRAVEEACQTSPLLDTVQGCHAYLFSRLFCS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	260	2.2.26 [Sep-21-2011]
B7K911	232	Urease accessory protein	yes	no	0.823	0.922	0.285	1e-12
Q117Z4	232	Urease accessory protein	yes	no	0.819	0.918	0.255	2e-11
A0JRH6	225	Urease accessory protein	yes	no	0.803	0.928	0.280	3e-10
A9KJR7	228	Urease accessory protein	yes	no	0.680	0.776	0.279	3e-09
O14016	235	Uncharacterized urease ac	yes	no	0.803	0.889	0.270	3e-09
B2HSZ3	211	Urease accessory protein	yes	no	0.769	0.947	0.293	2e-08
Q07402	227	Urease accessory protein	N/A	no	0.826	0.947	0.237	4e-08
A1R1C7	223	Urease accessory protein	yes	no	0.573	0.668	0.325	1e-07
B9DLW9	229	Urease accessory protein	yes	no	0.811	0.921	0.255	1e-07
Q4A0J7	229	Urease accessory protein	yes	no	0.830	0.943	0.243	3e-07

>sp|B7K911|UREF_CYAP7 Urease accessory protein UreF OS=Cyanothece sp. (strain PCC 7424) GN=ureF PE=3 SV=1

 Score = 73.6 bits (179), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 64/224 (28%), Positives = 101/224 (45%), Gaps = 10/224 (4%)

Query: 43  WQLLDSILPTGGFAHSFGLEAAIQARLISSPDDLRTYVIHILEN----TGSLLLPFVCTA 98
            QL DS  P+G F  S GLEA  Q   I S  DL  ++  +L N    T  + L      
Sbjct: 13  MQLSDSFFPSGSFTLSHGLEALAQGEQIHSIKDLEIFLQILLHNKLGTTDLVALIHAYRG 72

Query: 99  TTSPDLETWHKLDRMLDATLTNEVSRKASTAQGSALLRVAASVF--TEVPSLKKMREISL 156
           +   DL+   + D  L A    E +R+     G ALL VA   +  T++ +L+K      
Sbjct: 73  SKREDLDAVREADHQLFAQTLIEKNREMGRKSGRALLMVARETWQDTQLETLEK----ET 128

Query: 157 NFGDVAFHHAPLFGIICGLLGLHRGTSQRAYMFITLRDIISAATRLNLVGPLGAAVLQHQ 216
             G +   H  +F ++  + GL    +  A++   +  ++ AA RLN++G L A  +  +
Sbjct: 129 AKGTINGLHPIIFAVVGRVAGLSETDTGLAFLHSFITGLLGAAIRLNIIGHLQAQKILLK 188

Query: 217 IAFVAEAMLKKWKDRAVEEACQTSPLLDTVQGCHAYLFSRLFCS 260
           +A   E   +K  +  + E    +PL+D  Q  H  L  RLF +
Sbjct: 189 LAPDLETTYQKATEINLNEMFSCTPLIDIAQMNHQNLDYRLFAN 232

Required for maturation of urease via the functional incorporation of the urease nickel metallocenter.
Cyanothece sp. (strain PCC 7424) (taxid: 65393)

>sp|Q117Z4|UREF_TRIEI Urease accessory protein UreF OS=Trichodesmium erythraeum (strain IMS101) GN=ureF PE=3 SV=1

 Score = 70.1 bits (170), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 104/223 (46%), Gaps = 10/223 (4%)

Query: 44  QLLDSILPTGGFAHSFGLEAAIQARLISSPDDLRTYVIHILEN----TGSLLLPFVCTAT 99
           QL DS  PTG F  S GLE  +Q   I S  ++  ++  +L N    +  + L       
Sbjct: 14  QLSDSFFPTGSFTFSHGLETLVQTGKIQSQPEILYFLQILLRNKVGVSDVVALIHSYRGC 73

Query: 100 TSPDLETWHKLDRMLDATLTNEVSRKASTAQGSALLRVAASVFTEVPSLKKMREISLNF- 158
            + D+E     DRML        +R+     G ALL VA+S + +    ++++ ++++  
Sbjct: 74  KNGDIEAVRVADRMLFVQTAIAKNRETQRQSGRALLMVASSTWQD----ERLKTLNIDAV 129

Query: 159 -GDVAFHHAPLFGIICGLLGLHRGTSQRAYMFITLRDIISAATRLNLVGPLGAAVLQHQI 217
            G++   H  +FG +  ++GL    +  A++   + +I+ AA RL ++G + A  +  Q+
Sbjct: 130 SGNIHCLHPVIFGAVTSVVGLDERNAVLAFLHGLVTNILGAAIRLGILGHIQAQQILLQL 189

Query: 218 AFVAEAMLKKWKDRAVEEACQTSPLLDTVQGCHAYLFSRLFCS 260
               EA+        +E+    +P +D  Q  H  L  +LF +
Sbjct: 190 VPDIEAVWSTAVSMNLEQMWSCTPFIDIAQMQHPKLAHKLFAN 232

Required for maturation of urease via the functional incorporation of the urease nickel metallocenter.

Trichodesmium erythraeum (strain IMS101) (taxid: 203124)

>sp|A0JRH6|UREF_ARTS2 Urease accessory protein UreF OS=Arthrobacter sp. (strain FB24) GN=ureF PE=3 SV=1

 Score = 65.5 bits (158), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 62/221 (28%), Positives = 95/221 (42%), Gaps = 12/221 (5%)

Query: 44  QLLDSILPTGGFAHSFGLEAAIQARLISSPDD----LRTYVIHILENTGSLLLPFVCTAT 99
           QL DS LPTG FAHS G E  I+  L+         L  +V   L  +  L + F+    
Sbjct: 13  QLTDSALPTGAFAHSLGFETYIERGLVHDEASFGVWLSAFVGQQLSYSDGLAIRFLYEGV 72

Query: 100 TSPDLETWHKLDRMLDATLTNEVSRKASTAQGSALLRVAASVFTEVPSLKKMREISLNFG 159
                 ++ +LD +L A L     R+AST  G+ LL +   VF   P L + R + +  G
Sbjct: 73  ------SFAELDALLTAQLLPRQLREASTKMGTRLLEIGTEVFPS-PELAEYRAL-VGAG 124

Query: 160 DVAFHHAPLFGIICGLLGLHRGTSQRAYMFITLRDIISAATRLNLVGPLGAAVLQHQIAF 219
             A H    F ++   LG+    S  AY+F  +  +   A R   +G      L  + + 
Sbjct: 125 RAAGHQPLAFAVVARSLGVPLTESLAAYLFAAVTSLTQNAVRAIPLGQNAGQRLLRKASD 184

Query: 220 VAEAMLKKWKDRAVEEACQTSPLLDTVQGCHAYLFSRLFCS 260
              A +++    A ++    SP L+  Q  H    +R+F S
Sbjct: 185 DVAAAVERIGRLAPDDFGAVSPGLEISQMRHERQRARMFMS 225

Required for maturation of urease via the functional incorporation of the urease nickel metallocenter.

Arthrobacter sp. (strain FB24) (taxid: 290399)

>sp|A9KJR7|UREF_CLOPH Urease accessory protein UreF OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=ureF PE=3 SV=1

 Score = 62.4 bits (150), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 52/186 (27%), Positives = 87/186 (46%), Gaps = 9/186 (4%)

Query: 44  QLLDSILPTGGFAHSFGLEAAIQARLISSPDDL----RTYVIHILENTGSLLLPFVCTAT 99
           QL DS  PTG F+HSFGLE  IQ  +I + +      + Y+   L  +  L       A 
Sbjct: 10  QLCDSTFPTGAFSHSFGLETYIQDGIIFNKETFSKWNKAYIKEQLVYSDGLACRLAYEAL 69

Query: 100 TSPDLETWHKLDRMLDATLTNEVSRKASTAQGSALLRVAASVFTEVPSLKKMREISLNFG 159
            + D++T   LD ML A +    SR+ S   G  LL +   ++   PS +    +     
Sbjct: 70  ENNDMDTIWMLDGMLRAQILARESREGSRIIGERLLTLGNQLY---PSSRLTSYVDRIAK 126

Query: 160 DVAFHH-APLFGIICGLLGLHRGTSQRAYMFITLRDIISAATR-LNLVGPLGAAVLQHQI 217
            V++ H A  F +I   L + + T+  +Y+F +  +++  A R + L    G  +++   
Sbjct: 127 GVSYGHPAIAFALISHSLSIPKNTTVMSYLFSSNANLVQNAVRGIPLGQTQGQQLIKESQ 186

Query: 218 AFVAEA 223
            F+A+A
Sbjct: 187 DFIADA 192

Required for maturation of urease via the functional incorporation of the urease nickel metallocenter.

Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) (taxid: 357809)

>sp|O14016|UREF_SCHPO Uncharacterized urease accessory protein UreF-like OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC29A4.13 PE=3 SV=1

 Score = 62.4 bits (150), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 62/229 (27%), Positives = 109/229 (47%), Gaps = 20/229 (8%)

Query: 45  LLDSILPTGGFAHSFGLEAAIQARLISSPDDLRTYVIHILENTGSLLLPFVCTATTSPDL 104
           L D+  P   F++S+GLE+ +  + +   +    ++   L +     LP V  A  SP  
Sbjct: 14  LSDTAFPLSSFSYSYGLESYLSHQQVRDVNAFFNFLPLSLNSVLHTNLPTVKAAWESP-- 71

Query: 105 ETWHKLDRMLDATLTNEVSRKASTAQGSALLRV---AASVF-TEVPSLKKMREISLNF-G 159
           + + +++   ++T T  +++K ST QG +LL +   + S F T     K + E       
Sbjct: 72  QQYSEIEDFFESTQTCTIAQKVSTMQGKSLLNIWTKSLSFFVTSTDVFKYLDEYERRVRS 131

Query: 160 DVAFHHAPL-FGIICGLLGLHRGTSQRAYMFIT--LRDIISAATRLNLVGPLG-AAVLQH 215
             A  H P+ +G++C  LGL     +  Y+F+    + I SAA RL+++      + L H
Sbjct: 132 KKALGHFPVVWGVVCRALGL--SLERTCYLFLLGHAKSICSAAVRLDVLTSFQYVSTLAH 189

Query: 216 QIAFVAEAMLKKWKDRA----VEEACQTSPLLDTVQGCHAYLFSRLFCS 260
                 E++L+     A    +E+  Q+   LD  QG H+ L+SR+F S
Sbjct: 190 P---QTESLLRDSSQLALNMQLEDTAQSWYTLDLWQGRHSLLYSRIFNS 235

Probably facilitates nickel incorporation.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|B2HSZ3|UREF_MYCMM Urease accessory protein UreF OS=Mycobacterium marinum (strain ATCC BAA-535 / M) GN=ureF PE=3 SV=1

 Score = 59.7 bits (143), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 64/218 (29%), Positives = 98/218 (44%), Gaps = 18/218 (8%)

Query: 45  LLDSILPTGGFAHSFGLEAAIQARLISSPDDLRTYVIHILENTGSLLLPFVCTATTSPDL 104
           L DS LPTG   HS G+E AI A L+++   L  ++   + + G L+   +  A    DL
Sbjct: 10  LADSRLPTGAHVHSGGVEEAITAGLVTNLSSLEAFLKRRIRSHG-LVTASIAAAVQRGDL 68

Query: 105 ETWHKLDRMLDATLTNEVSRKASTAQGSALLRVAASVFTEV--PSLKKMREISLNFGDVA 162
                 DR  DA   +  +R AS +QG  L+R+A +++ E    +L     +++  G V 
Sbjct: 69  AP-DGADRETDARTPSPAARDASRSQGRGLVRLARAIWPEADWDALGAKPHLAVAAGRV- 126

Query: 163 FHHAPLFGIICGLLGLHRGTSQRAYMFITLRDIISAATRLNLVGPLGAAVLQHQIAFVAE 222
                  G + GL   H        ++ T+    +AA RL  + P   AVL  Q+   +E
Sbjct: 127 -------GALAGLTPEHLALQ---LVYTTMTGSATAAQRLLALDPTDVAVLTFQL---SE 173

Query: 223 AMLKKWKDRAVEEACQTSPLLDTVQGCHAYLFSRLFCS 260
                  + A+  A  + PLLDT+   HA     LF S
Sbjct: 174 LCTTTAAEAAIGLADLSDPLLDTLAQHHAERERPLFAS 211

Required for maturation of urease via the functional incorporation of the urease nickel metallocenter.

Mycobacterium marinum (strain ATCC BAA-535 / M) (taxid: 216594)

>sp|Q07402|UREF_BACSB Urease accessory protein UreF OS=Bacillus sp. (strain TB-90) GN=ureF PE=3 SV=1

 Score = 58.9 bits (141), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 54/227 (23%), Positives = 98/227 (43%), Gaps = 12/227 (5%)

Query: 41  SEWQLLDSILPTGGFAHSFGLEAAIQARLISSPDDLRT----YVIHILENTGSLLLPFVC 96
           S +QL DS  P+G F+HSFGLE  IQ ++I+  +  +     Y+   L  T  L      
Sbjct: 6   SLFQLCDSNFPSGSFSHSFGLETYIQEKVITDKESFKNAISVYIRKQLFFTEGLACILAY 65

Query: 97  TATTSPDLETWHKLDRMLDATLTNEVSRKASTAQGSALLRVAASVFTE---VPSLKKMRE 153
            A    +     +LD +L A+   + +R  +   G  + ++   ++     +    +++E
Sbjct: 66  EAMEKNEPSALVELDHILFASNVAQETRSGNQRMGERMAKLCVDLYPSPILIEYTNRIKE 125

Query: 154 ISLNFGDVAFHHAPLFGIICGLLGLHRGTSQRAYMFITLRDIISAATRLNLVGPLGAAVL 213
               +G    H A +F I+   L + + T+  AY+F  +  ++  A R   +G      +
Sbjct: 126 -KKAYG----HSAIVFAIVAYHLKVTKETAVGAYLFANVSALVQNAVRGIPIGQTDGQRI 180

Query: 214 QHQIAFVAEAMLKKWKDRAVEEACQTSPLLDTVQGCHAYLFSRLFCS 260
             +I  + E  ++       E+    SP ++  Q  H  L  RLF S
Sbjct: 181 LVEIQPLLEEGVRTISQLPKEDLGAVSPGMEIAQMRHERLNVRLFMS 227

Required for maturation of urease via the functional incorporation of the urease nickel metallocenter.

Bacillus sp. (strain TB-90) (taxid: 36824)

>sp|A1R1C7|UREF_ARTAT Urease accessory protein UreF OS=Arthrobacter aurescens (strain TC1) GN=ureF PE=3 SV=1

 Score = 57.0 bits (136), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 69/163 (42%), Gaps = 14/163 (8%)

Query: 44  QLLDSILPTGGFAHSFGLEAAIQARLISSPDD----LRTYVIHILENTGSLLLPFVCTAT 99
           QL DS LPTG FAHS G E+ I   L+         L+ +V   L  +  L L F+    
Sbjct: 11  QLTDSALPTGAFAHSLGFESYIHRGLVRDESTFSTWLQAFVSQQLSYSDGLALRFLFEGV 70

Query: 100 TSPDLETWHKLDRMLDATLTNEVSRKASTAQGSALLRVAASVFTEVPSLKKMREISLNFG 159
                     LD +L A L     R+AS   G  LL +   VF   PS +      L   
Sbjct: 71  DVG------LLDGVLSAQLLAREVREASLKMGGRLLEIGGEVF---PSAELEAYRGLVRA 121

Query: 160 DVAFHHAPL-FGIICGLLGLHRGTSQRAYMFITLRDIISAATR 201
             A  H PL FG+I   LG+    +  AY+F T+  +   A R
Sbjct: 122 GSASGHQPLAFGVIARSLGVPLEEALSAYLFATVTSLTQNAVR 164

Required for maturation of urease via the functional incorporation of the urease nickel metallocenter.

Arthrobacter aurescens (strain TC1) (taxid: 290340)

>sp|B9DLW9|UREF_STACT Urease accessory protein UreF OS=Staphylococcus carnosus (strain TM300) GN=ureF PE=3 SV=1

 Score = 57.0 bits (136), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 58/227 (25%), Positives = 91/227 (40%), Gaps = 16/227 (7%)

Query: 43  WQLLDSILPTGGFAHSFGLEAAIQARLISSPDD----LRTYVIHILENTGSLLLPFVCTA 98
           +Q  DS  PTG F+HSFGLE  IQ   +   +     LR ++   L     L +  V  A
Sbjct: 10  FQFCDSQFPTGAFSHSFGLETYIQRGTVHDEESFKEWLRLFLSEQLTYADGLAIRLVYEA 69

Query: 99  TTSPDLETWHKLDRMLDATLTNEVSRKASTAQGSALLRVAASVFTEVPSLKKMREISLNF 158
               D E    LDRML        +R  +   G+ ++++A  ++       +  E   N 
Sbjct: 70  LNQNDPEKILHLDRMLFVQNMPRETRTGTKQMGTRMVKLANELYD--SEWIQWYEAQYNE 127

Query: 159 GDVAFHHAPLFGIICGLLGLHRGTSQRAYMFITLRDIISAATRLNLVGPL-GAAVLQHQI 217
            +   H A  F ++   LG+        Y++  +  +   A R   +G   G  V+   I
Sbjct: 128 KNAKLHPAICFTMLGHFLGIDIEMIIDYYLYQNVSALTQNAVRAIPLGQTAGQRVVTDMI 187

Query: 218 AFVAEAMLKKWKDRAVE----EACQTSPLLDTVQGCHAYLFSRLFCS 260
            F     +K  +D   E    E   T+P L+  Q  H  +  R+F S
Sbjct: 188 TF-----MKTTRDHIFELAESEFGITAPGLEINQMEHENVNVRIFIS 229

Required for maturation of urease via the functional incorporation of the urease nickel metallocenter.

Staphylococcus carnosus (strain TM300) (taxid: 396513)

>sp|Q4A0J7|UREF_STAS1 Urease accessory protein UreF OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=ureF PE=3 SV=1

 Score = 55.5 bits (132), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 56/230 (24%), Positives = 97/230 (42%), Gaps = 14/230 (6%)

Query: 39  HWSEWQLLDSILPTGGFAHSFGLEAAIQARLISSPDDLRTYVIHILEN----TGSLLLPF 94
           H   +Q  DS  PTG F+HSFGLE  IQ   +   +  + +++  L         L +  
Sbjct: 6   HLRLFQFCDSQFPTGAFSHSFGLETYIQRDTVHDEESFQQWLVLFLNEQLTYADGLTMRL 65

Query: 95  VCTATTSPDLETWHKLDRMLDATLTNEVSRKASTAQGSALLRVAASVFTEVPSLKKMREI 154
           V  A    D +   KLDR+L      + +R+ S   G+ ++++A+ ++            
Sbjct: 66  VYDALNENDTKAILKLDRILFVQNLPKETRQGSKQMGNRMVKLASELYD--SDWINWYHA 123

Query: 155 SLNFGDVAFHHAPLFGIICGLLGLHRGTSQRAYMFITLRDIISAATRLNLVGPLGAAVLQ 214
            +     + H A  F ++   LG+   T    Y++  +  +   A R     PLG    Q
Sbjct: 124 QMKDKKASLHPAICFTMLGHHLGVDIETIIDYYLYQNVSSLTQNAVR---AIPLGQTAGQ 180

Query: 215 HQIAFVAEAMLKKWKDRAVE-EACQ---TSPLLDTVQGCHAYLFSRLFCS 260
            +I      ++K+ +D  +   A Q   T+P L+  Q  H  +  R+F S
Sbjct: 181 -RIVHKMIPIMKETRDHIMTIPASQLGITAPGLEINQMEHENVNVRIFIS 229

Required for maturation of urease via the functional incorporation of the urease nickel metallocenter.

Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) (taxid: 342451)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	260
224054210	243	predicted protein [Populus trichocarpa]	0.923	0.987	0.741	1e-104
225435892	243	PREDICTED: urease accessory protein UreF	0.911	0.975	0.755	1e-101
350535509	242	ureF protein [Solanum lycopersicum] gi|3	0.857	0.921	0.775	1e-101
225435890	238	PREDICTED: urease accessory protein UreF	0.857	0.936	0.789	1e-100
449454022	228	PREDICTED: urease accessory protein UreF	0.853	0.973	0.752	4e-95
255638342	238	unknown [Glycine max]	0.857	0.936	0.735	4e-95
297845172	240	hypothetical protein ARALYDRAFT_472420 [	0.857	0.929	0.713	8e-95
357493751	279	Urease accessory protein UreF [Medicago	0.857	0.799	0.708	8e-95
388500806	240	unknown [Lotus japonicus]	0.911	0.987	0.679	2e-94
351726506	240	urease accessory protein UreF [Glycine m	0.857	0.929	0.726	2e-94

>gi|224054210|ref|XP_002298146.1| predicted protein [Populus trichocarpa] gi|222845404|gb|EEE82951.1| predicted protein [Populus trichocarpa]

 Score =  382 bits (982), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 178/240 (74%), Positives = 206/240 (85%)

Query: 21  EANVSHGKEKQASVELPLHWSEWQLLDSILPTGGFAHSFGLEAAIQARLISSPDDLRTYV 80
           +  +   KEK AS    LHWS+WQL+DSILPTGGFAHSFG+EAAIQAR+I +P+D +TYV
Sbjct: 4   KKEIDGAKEKPASTSFSLHWSQWQLIDSILPTGGFAHSFGIEAAIQARVILNPEDFQTYV 63

Query: 81  IHILENTGSLLLPFVCTATTSPDLETWHKLDRMLDATLTNEVSRKASTAQGSALLRVAAS 140
           IH+LENTGSLLLP+V +A   PDL+ W KLDRMLDATLTNEVSRKAS +QGSAL+RVAA+
Sbjct: 64  IHVLENTGSLLLPYVYSAAMCPDLDNWRKLDRMLDATLTNEVSRKASVSQGSALMRVAAA 123

Query: 141 VFTEVPSLKKMREISLNFGDVAFHHAPLFGIICGLLGLHRGTSQRAYMFITLRDIISAAT 200
           VFTE+PSLK MRE+SL  G VAFHHAP+FGI+CGLLG+   TSQRAYMFITLRD  SAAT
Sbjct: 124 VFTEIPSLKIMREMSLGSGIVAFHHAPVFGIVCGLLGMDSETSQRAYMFITLRDAFSAAT 183

Query: 201 RLNLVGPLGAAVLQHQIAFVAEAMLKKWKDRAVEEACQTSPLLDTVQGCHAYLFSRLFCS 260
           RLNLVGPLGAAVLQHQ++  AE MLK+W +R VE+ACQT+PLLDT+QGCH YLFSRLFCS
Sbjct: 184 RLNLVGPLGAAVLQHQVSIAAETMLKRWMNREVEDACQTAPLLDTLQGCHGYLFSRLFCS 243

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225435892|ref|XP_002265807.1| PREDICTED: urease accessory protein UreF-like isoform 1 [Vitis vinifera]

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 179/237 (75%), Positives = 199/237 (83%)

Query: 24  VSHGKEKQASVELPLHWSEWQLLDSILPTGGFAHSFGLEAAIQARLISSPDDLRTYVIHI 83
           +  G    AS    L WS+WQLLDSILPTGGFAHS GLEAA QA +IS P+DL+TYV+H+
Sbjct: 7   IDKGSHGPASTNALLQWSQWQLLDSILPTGGFAHSCGLEAAFQAHMISGPEDLQTYVLHV 66

Query: 84  LENTGSLLLPFVCTATTSPDLETWHKLDRMLDATLTNEVSRKASTAQGSALLRVAASVFT 143
           LENTGSLLLPFV +A  SP+LETWHKLDRMLDATLTNEV RKAS AQGSAL+RVAA+VF+
Sbjct: 67  LENTGSLLLPFVYSANMSPNLETWHKLDRMLDATLTNEVGRKASIAQGSALMRVAATVFS 126

Query: 144 EVPSLKKMREISLNFGDVAFHHAPLFGIICGLLGLHRGTSQRAYMFITLRDIISAATRLN 203
           EVPSLK MR  SL  G VAFHHAP+FG++CGLLGL  G SQRAYMFIT+RD+ISAATRLN
Sbjct: 127 EVPSLKMMRSNSLGSGTVAFHHAPIFGLVCGLLGLDVGISQRAYMFITMRDVISAATRLN 186

Query: 204 LVGPLGAAVLQHQIAFVAEAMLKKWKDRAVEEACQTSPLLDTVQGCHAYLFSRLFCS 260
           L+GPLGAA LQH IA  AE M KKW +R  EEACQT+PLLDTVQGCHAYLFSRLFCS
Sbjct: 187 LIGPLGAAKLQHDIAIAAEEMSKKWMNRKFEEACQTAPLLDTVQGCHAYLFSRLFCS 243

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350535509|ref|NP_001233942.1| ureF protein [Solanum lycopersicum] gi|31096389|emb|CAC85466.1| putative urease accessory protein F [Solanum lycopersicum]

 Score =  372 bits (955), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 173/223 (77%), Positives = 200/223 (89%)

Query: 38  LHWSEWQLLDSILPTGGFAHSFGLEAAIQARLISSPDDLRTYVIHILENTGSLLLPFVCT 97
           L WS+WQLLDS+LPTGGFAHSFG+EAAIQARL+S P+DLRT+VIHILENTGSLLLPFV T
Sbjct: 20  LQWSQWQLLDSVLPTGGFAHSFGVEAAIQARLVSGPEDLRTFVIHILENTGSLLLPFVYT 79

Query: 98  ATTSPDLETWHKLDRMLDATLTNEVSRKASTAQGSALLRVAASVFTEVPSLKKMREISLN 157
             TSP++ETW+KLD++LDATLTNEVSRKAS +QGSALLRVAA+VF EVP  K MRE+SL 
Sbjct: 80  LNTSPNVETWYKLDKILDATLTNEVSRKASISQGSALLRVAAAVFQEVPYFKTMREVSLA 139

Query: 158 FGDVAFHHAPLFGIICGLLGLHRGTSQRAYMFITLRDIISAATRLNLVGPLGAAVLQHQI 217
            G V FHHAP+FG++CGLLGL+  TSQ+AY+FIT+RD++SAATRLNLVGPLGAAVLQHQ+
Sbjct: 140 SGAVRFHHAPIFGLVCGLLGLNAETSQKAYLFITMRDVVSAATRLNLVGPLGAAVLQHQL 199

Query: 218 AFVAEAMLKKWKDRAVEEACQTSPLLDTVQGCHAYLFSRLFCS 260
           A  AE + KKW +R VEEACQTSPLLDT+QGCH YLFSRLFCS
Sbjct: 200 AANAEDLSKKWMNRPVEEACQTSPLLDTIQGCHGYLFSRLFCS 242

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225435890|ref|XP_002265848.1| PREDICTED: urease accessory protein UreF-like isoform 2 [Vitis vinifera]

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 176/223 (78%), Positives = 195/223 (87%)

Query: 38  LHWSEWQLLDSILPTGGFAHSFGLEAAIQARLISSPDDLRTYVIHILENTGSLLLPFVCT 97
           L WS+WQLLDSILPTGGFAHS GLEAA QA +IS P+DL+TYV+H+LENTGSLLLPFV +
Sbjct: 16  LQWSQWQLLDSILPTGGFAHSCGLEAAFQAHMISGPEDLQTYVLHVLENTGSLLLPFVYS 75

Query: 98  ATTSPDLETWHKLDRMLDATLTNEVSRKASTAQGSALLRVAASVFTEVPSLKKMREISLN 157
           A  SP+LETWHKLDRMLDATLTNEV RKAS AQGSAL+RVAA+VF+EVPSLK MR  SL 
Sbjct: 76  ANMSPNLETWHKLDRMLDATLTNEVGRKASIAQGSALMRVAATVFSEVPSLKMMRSNSLG 135

Query: 158 FGDVAFHHAPLFGIICGLLGLHRGTSQRAYMFITLRDIISAATRLNLVGPLGAAVLQHQI 217
            G VAFHHAP+FG++CGLLGL  G SQRAYMFIT+RD+ISAATRLNL+GPLGAA LQH I
Sbjct: 136 SGTVAFHHAPIFGLVCGLLGLDVGISQRAYMFITMRDVISAATRLNLIGPLGAAKLQHDI 195

Query: 218 AFVAEAMLKKWKDRAVEEACQTSPLLDTVQGCHAYLFSRLFCS 260
           A  AE M KKW +R  EEACQT+PLLDTVQGCHAYLFSRLFCS
Sbjct: 196 AIAAEEMSKKWMNRKFEEACQTAPLLDTVQGCHAYLFSRLFCS 238

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449454022|ref|XP_004144755.1| PREDICTED: urease accessory protein UreF-like [Cucumis sativus] gi|449490824|ref|XP_004158718.1| PREDICTED: urease accessory protein UreF-like [Cucumis sativus]

 Score =  353 bits (906), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 167/222 (75%), Positives = 194/222 (87%)

Query: 39  HWSEWQLLDSILPTGGFAHSFGLEAAIQARLISSPDDLRTYVIHILENTGSLLLPFVCTA 98
           HWS+WQLLDSILPTGGFAHSFGLEAAIQA+++SSPDDL+T+VIH+L+NTGSL LPFV +A
Sbjct: 7   HWSQWQLLDSILPTGGFAHSFGLEAAIQAQIVSSPDDLKTFVIHLLDNTGSLFLPFVHSA 66

Query: 99  TTSPDLETWHKLDRMLDATLTNEVSRKASTAQGSALLRVAASVFTEVPSLKKMREISLNF 158
           T SPD ETW K D +LDA LTNEVSRKAS  QGSAL+RV+A VF+E+PSLK MRE     
Sbjct: 67  TQSPDFETWKKNDMLLDAMLTNEVSRKASVTQGSALMRVSAIVFSEIPSLKAMRENLYGT 126

Query: 159 GDVAFHHAPLFGIICGLLGLHRGTSQRAYMFITLRDIISAATRLNLVGPLGAAVLQHQIA 218
           G V+FHHAP+FG+ICGLLG     SQRAY+FITLRD+ISAATRLNLVGPLGAAVLQHQ+A
Sbjct: 127 GAVSFHHAPIFGLICGLLGWDGTMSQRAYLFITLRDVISAATRLNLVGPLGAAVLQHQLA 186

Query: 219 FVAEAMLKKWKDRAVEEACQTSPLLDTVQGCHAYLFSRLFCS 260
           FVAE +LK+W +R VEEACQT PLL+TVQGCH+ LFS++FCS
Sbjct: 187 FVAEDILKRWMNRPVEEACQTVPLLETVQGCHSCLFSKMFCS 228

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255638342|gb|ACU19483.1| unknown [Glycine max]

 Score =  353 bits (906), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 164/223 (73%), Positives = 196/223 (87%)

Query: 38  LHWSEWQLLDSILPTGGFAHSFGLEAAIQARLISSPDDLRTYVIHILENTGSLLLPFVCT 97
           L WS+WQLLDS+LPTGGFAHSFGLEAA+Q  L+S  +DL+T+VIHILENTGSLLLPFV +
Sbjct: 16  LQWSQWQLLDSLLPTGGFAHSFGLEAAVQCHLVSDSNDLKTFVIHILENTGSLLLPFVYS 75

Query: 98  ATTSPDLETWHKLDRMLDATLTNEVSRKASTAQGSALLRVAASVFTEVPSLKKMREISLN 157
           A+  P+LETWHKLD++LDATLTNEV RKAS +QGSAL+RVA++VF+EVPSLK MR+ SL 
Sbjct: 76  ASMLPNLETWHKLDKILDATLTNEVGRKASISQGSALMRVASAVFSEVPSLKTMRDTSLG 135

Query: 158 FGDVAFHHAPLFGIICGLLGLHRGTSQRAYMFITLRDIISAATRLNLVGPLGAAVLQHQI 217
            G V+FHHAP+FG+ICG LG  + + QRAYMFIT+RD+ISAATRLNL+GPLGAA+LQHQ+
Sbjct: 136 LGTVSFHHAPVFGLICGALGFDKTSFQRAYMFITMRDVISAATRLNLIGPLGAALLQHQV 195

Query: 218 AFVAEAMLKKWKDRAVEEACQTSPLLDTVQGCHAYLFSRLFCS 260
           A  AE +L+KW +RAV+EACQT PLLDTVQGCH YLFSRLF S
Sbjct: 196 APNAEVILEKWMNRAVDEACQTMPLLDTVQGCHGYLFSRLFSS 238

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297845172|ref|XP_002890467.1| hypothetical protein ARALYDRAFT_472420 [Arabidopsis lyrata subsp. lyrata] gi|297336309|gb|EFH66726.1| hypothetical protein ARALYDRAFT_472420 [Arabidopsis lyrata subsp. lyrata]

 Score =  352 bits (904), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 159/223 (71%), Positives = 195/223 (87%)

Query: 38  LHWSEWQLLDSILPTGGFAHSFGLEAAIQARLISSPDDLRTYVIHILENTGSLLLPFVCT 97
           + WS+WQLLDSILPTGGFAHSFGLEAA+Q RL+SSP+DL T++IH+L+NT SLLLPFV +
Sbjct: 18  MQWSQWQLLDSILPTGGFAHSFGLEAAVQTRLVSSPEDLETHIIHLLDNTASLLLPFVYS 77

Query: 98  ATTSPDLETWHKLDRMLDATLTNEVSRKASTAQGSALLRVAASVFTEVPSLKKMREISLN 157
           A  SPD+ETWHKLD +L+ATLTN+VS KAS +QGSAL R+AASVFTE+P+LK +R+ SL 
Sbjct: 78  ALKSPDIETWHKLDGILNATLTNQVSSKASVSQGSALFRIAASVFTEIPNLKMIRDASLG 137

Query: 158 FGDVAFHHAPLFGIICGLLGLHRGTSQRAYMFITLRDIISAATRLNLVGPLGAAVLQHQI 217
             +V FHHAP+FG++CGLLG+   TSQRAY+F+TLRD++SAATRLN+VGP+GA+V+QH+I
Sbjct: 138 SKNVYFHHAPIFGLVCGLLGMDPETSQRAYLFVTLRDVLSAATRLNIVGPMGASVMQHRI 197

Query: 218 AFVAEAMLKKWKDRAVEEACQTSPLLDTVQGCHAYLFSRLFCS 260
           A VAE +L+KW DR   EACQTSPLLD VQGCH YLFSRLFCS
Sbjct: 198 AIVAETVLEKWMDREASEACQTSPLLDVVQGCHGYLFSRLFCS 240

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357493751|ref|XP_003617164.1| Urease accessory protein UreF [Medicago truncatula] gi|355518499|gb|AET00123.1| Urease accessory protein UreF [Medicago truncatula]

 Score =  352 bits (903), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 158/223 (70%), Positives = 194/223 (86%)

Query: 38  LHWSEWQLLDSILPTGGFAHSFGLEAAIQARLISSPDDLRTYVIHILENTGSLLLPFVCT 97
           L WS+WQLLDSILPTGGFAHSFGLEAA+Q+RL+S  ++L+T++IH+LENTGSL LPFV  
Sbjct: 57  LQWSQWQLLDSILPTGGFAHSFGLEAAVQSRLVSDSNELKTFLIHVLENTGSLFLPFVYL 116

Query: 98  ATTSPDLETWHKLDRMLDATLTNEVSRKASTAQGSALLRVAASVFTEVPSLKKMREISLN 157
           +  SP++ETWHKLDR+LDATLTNEV RKAS +QGSAL+RVA++VF E+PSLK MR+ S+ 
Sbjct: 117 SCMSPNMETWHKLDRILDATLTNEVGRKASISQGSALMRVASAVFAEIPSLKTMRDSSMK 176

Query: 158 FGDVAFHHAPLFGIICGLLGLHRGTSQRAYMFITLRDIISAATRLNLVGPLGAAVLQHQI 217
            G V+FHHAP+FG+ CG LG    +SQRA+MFIT+RD++SAATRLNL+GPLGAA+LQHQ+
Sbjct: 177 LGTVSFHHAPIFGLTCGALGFDSTSSQRAFMFITMRDVVSAATRLNLIGPLGAALLQHQV 236

Query: 218 AFVAEAMLKKWKDRAVEEACQTSPLLDTVQGCHAYLFSRLFCS 260
           A +AE +L+KW +R VEEACQT PLLDTVQGCH YLFSRLF S
Sbjct: 237 APIAEVILEKWMNRDVEEACQTMPLLDTVQGCHGYLFSRLFSS 279

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388500806|gb|AFK38469.1| unknown [Lotus japonicus]

 Score =  351 bits (900), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 161/237 (67%), Positives = 200/237 (84%)

Query: 24  VSHGKEKQASVELPLHWSEWQLLDSILPTGGFAHSFGLEAAIQARLISSPDDLRTYVIHI 83
           ++ G ++  +    L WS+WQLLDS+LPTGGFAHS GLEAA+Q+ L+S  D+L+T++I +
Sbjct: 4   INEGHDRPCTANSFLQWSQWQLLDSLLPTGGFAHSLGLEAAVQSHLVSDSDELKTFIIRL 63

Query: 84  LENTGSLLLPFVCTATTSPDLETWHKLDRMLDATLTNEVSRKASTAQGSALLRVAASVFT 143
           LENTGSLLLPFV +A+ SP+L+TWHKLDR+LDATLTNEV RKAS +QGSAL+RVA++VF 
Sbjct: 64  LENTGSLLLPFVYSASISPNLQTWHKLDRILDATLTNEVGRKASISQGSALMRVASAVFA 123

Query: 144 EVPSLKKMREISLNFGDVAFHHAPLFGIICGLLGLHRGTSQRAYMFITLRDIISAATRLN 203
           E+PSLK MR+ SL  G V+FHHAP+FG+ CG +G    +SQRA+MFIT+RD+ISAATRLN
Sbjct: 124 EIPSLKNMRDASLGLGTVSFHHAPIFGLTCGAIGFDNVSSQRAFMFITMRDVISAATRLN 183

Query: 204 LVGPLGAAVLQHQIAFVAEAMLKKWKDRAVEEACQTSPLLDTVQGCHAYLFSRLFCS 260
           L+GPLGAA+LQHQIA  AEA+L+KW +R VEEACQT PLLDTVQGCH YLFSRLF S
Sbjct: 184 LIGPLGAALLQHQIAPAAEAILEKWMNRNVEEACQTMPLLDTVQGCHGYLFSRLFSS 240

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351726506|ref|NP_001236617.1| urease accessory protein UreF [Glycine max] gi|24286406|gb|AAN47009.1| urease accessory protein UreF [Glycine max]

 Score =  351 bits (900), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 162/223 (72%), Positives = 196/223 (87%)

Query: 38  LHWSEWQLLDSILPTGGFAHSFGLEAAIQARLISSPDDLRTYVIHILENTGSLLLPFVCT 97
           L WS+WQLLDS+LPTG FAHSFGLEA +Q+ L+S+ +DL+T+VIHILENTGSLLLPFV +
Sbjct: 18  LQWSKWQLLDSLLPTGEFAHSFGLEATVQSHLVSNSNDLKTFVIHILENTGSLLLPFVYS 77

Query: 98  ATTSPDLETWHKLDRMLDATLTNEVSRKASTAQGSALLRVAASVFTEVPSLKKMREISLN 157
           A+  P+LETWHKLD++LDATLTNEV RKAS +QGSAL+RVA++VF+EVPSLK MR+ SL 
Sbjct: 78  ASMLPNLETWHKLDKILDATLTNEVGRKASISQGSALMRVASAVFSEVPSLKTMRDASLG 137

Query: 158 FGDVAFHHAPLFGIICGLLGLHRGTSQRAYMFITLRDIISAATRLNLVGPLGAAVLQHQI 217
              V+FHHAP+FG+ICG LG  R +SQRAYMFIT+RD+ISAATRLNL+GPLGAA+LQH++
Sbjct: 138 LETVSFHHAPVFGLICGALGFDRTSSQRAYMFITMRDVISAATRLNLIGPLGAALLQHRV 197

Query: 218 AFVAEAMLKKWKDRAVEEACQTSPLLDTVQGCHAYLFSRLFCS 260
           A +AE +L+KW +R VEEACQT PLLDTVQGCH YLFSRLF S
Sbjct: 198 APIAEVILEKWMNRVVEEACQTMPLLDTVQGCHGYLFSRLFSS 240

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	260
TAIR|locus:2036997	240	UREF "urease accessory protein	0.857	0.929	0.713	1.1e-87
POMBASE|SPAC29A4.13	235	SPAC29A4.13 "urease accessory	0.803	0.889	0.270	2.5e-12

TAIR|locus:2036997 UREF "urease accessory protein F" [Arabidopsis thaliana (taxid:3702)]

 Score = 876 (313.4 bits), Expect = 1.1e-87, P = 1.1e-87
 Identities = 159/223 (71%), Positives = 194/223 (86%)

Query:    38 LHWSEWQLLDSILPTGGFAHSFGLEAAIQARLISSPDDLRTYVIHILENTGSLLLPFVCT 97
             + WS+WQLLDSILPTGGFAHSFGLEAAIQ RL+SSP+DL T++IH+L+NT SLLLPFV +
Sbjct:    18 MQWSQWQLLDSILPTGGFAHSFGLEAAIQTRLVSSPEDLETHIIHVLDNTASLLLPFVYS 77

Query:    98 ATTSPDLETWHKLDRMLDATLTNEVSRKASTAQGSALLRVAASVFTEVPSLKKMREISLN 157
             A  SPD+ETWHKLD +L+ATLTN+VS KAS +QGSAL R+AASVFTEVP+LK +R+ SL 
Sbjct:    78 ALKSPDIETWHKLDGILNATLTNQVSSKASMSQGSALFRIAASVFTEVPNLKMIRDASLG 137

Query:   158 FGDVAFHHAPLFGIICGLLGLHRGTSQRAYMFITLRDIISAATRLNLVGPLGAAVLQHQI 217
               +V FHHAP+FG++CGLLG+   TSQRAY+F+TLRD++SAATRLN+VGP+GA+V+QH+I
Sbjct:   138 SKNVCFHHAPIFGLVCGLLGMDSETSQRAYLFVTLRDVLSAATRLNIVGPMGASVMQHRI 197

Query:   218 AFVAEAMLKKWKDRAVEEACQTSPLLDTVQGCHAYLFSRLFCS 260
             A V E +L+KW +R   EACQTSPLLD VQGCH YLFSRLFCS
Sbjct:   198 AIVTETVLEKWMNREAGEACQTSPLLDVVQGCHGYLFSRLFCS 240

GO:0005737 "cytoplasm" evidence=ISM

GO:0006807 "nitrogen compound metabolic process" evidence=IEA;IMP

GO:0016151 "nickel cation binding" evidence=IEA

GO:0048554 "positive regulation of metalloenzyme activity" evidence=IMP

GO:0006661 "phosphatidylinositol biosynthetic process" evidence=RCA

POMBASE|SPAC29A4.13 SPAC29A4.13 "urease accessory protein UreF (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 170 (64.9 bits), Expect = 2.5e-12, P = 2.5e-12
 Identities = 62/229 (27%), Positives = 109/229 (47%)

Query:    45 LLDSILPTGGFAHSFGLEAAIQARLISSPDDLRTYVIHILENTGSLLLPFVCTATTSPDL 104
             L D+  P   F++S+GLE+ +  + +   +    ++   L +     LP V  A  SP  
Sbjct:    14 LSDTAFPLSSFSYSYGLESYLSHQQVRDVNAFFNFLPLSLNSVLHTNLPTVKAAWESP-- 71

Query:   105 ETWHKLDRMLDATLTNEVSRKASTAQGSALLRV---AASVF-TEVPSLKKMREISLNF-G 159
             + + +++   ++T T  +++K ST QG +LL +   + S F T     K + E       
Sbjct:    72 QQYSEIEDFFESTQTCTIAQKVSTMQGKSLLNIWTKSLSFFVTSTDVFKYLDEYERRVRS 131

Query:   160 DVAFHHAPL-FGIICGLLGLHRGTSQRAYMFIT--LRDIISAATRLNLVGPLG-AAVLQH 215
               A  H P+ +G++C  LGL     +  Y+F+    + I SAA RL+++      + L H
Sbjct:   132 KKALGHFPVVWGVVCRALGL--SLERTCYLFLLGHAKSICSAAVRLDVLTSFQYVSTLAH 189

Query:   216 QIAFVAEAMLKKWKDRAV----EEACQTSPLLDTVQGCHAYLFSRLFCS 260
                   E++L+     A+    E+  Q+   LD  QG H+ L+SR+F S
Sbjct:   190 P---QTESLLRDSSQLALNMQLEDTAQSWYTLDLWQGRHSLLYSRIFNS 235


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.134   0.405    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      260       260   0.00089  114 3  11 22  0.43    33
                                                     32  0.49    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  614 (65 KB)
  Total size of DFA:  195 KB (2109 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  22.00u 0.13s 22.13t   Elapsed:  00:00:01
  Total cpu time:  22.00u 0.13s 22.13t   Elapsed:  00:00:01
  Start:  Sat May 11 08:39:44 2013   End:  Sat May 11 08:39:45 2013

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0016151 "nickel cation binding" evidence=IEA

GO:0019627 "urea metabolic process" evidence=ISM

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	eugene3.00011131	hypothetical protein (243 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.VIII.1783.1	urease (EC-3.5.1.5) (837 aa)	•		•			•	•		0.891
	grail3.0021023901	hypothetical protein (281 aa)	•		•			•	•		0.850
	grail3.3134000101	Predicted protein (100 aa)	•		•			•	•		0.824
	eugene3.00002495	hypothetical protein (261 aa)	•		•				•		0.809
	gw1.29.183.1	hypothetical protein (289 aa)	•		•				•		0.680

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	260
COG0830	229	COG0830, UreF, Urease accessory protein UreF [Post	1e-26
pfam01730	150	pfam01730, UreF, UreF	2e-10

>gnl|CDD|223900 COG0830, UreF, Urease accessory protein UreF [Posttranslational modification, protein turnover, chaperones]

 Score =  102 bits (257), Expect = 1e-26
 Identities = 60/223 (26%), Positives = 104/223 (46%), Gaps = 11/223 (4%)

Query: 44  QLLDSILPTGGFAHSFGLEAAIQARLISSPDDLRTYVIHIL-ENTGSLLLPFVCT---AT 99
           QL DS  P G F++SFGLE AIQA +++    L  ++   L +         +     A 
Sbjct: 12  QLADSAFPVGAFSYSFGLETAIQAGIVTDAATLEAWLKTQLNQGLLYNDALLLALAYRAL 71

Query: 100 TSPDLETWHKLDRMLDATLTNEVSRKASTAQGSALLRVAASVFTEVPS--LKKMREISLN 157
              D E   + D +L A       R+ S   G ALL++A +++ + PS  L+++ +    
Sbjct: 72  LDDDAEALLEADELLFAQKLARELREESRRMGRALLKLARALWEDDPSAWLERIPQ---- 127

Query: 158 FGDVAFHHAPLFGIICGLLGLHRGTSQRAYMFITLRDIISAATRLNLVGPLGAAVLQHQI 217
                 H+A  FG++   LG+    +  A+++    +++SAA RL  +G L    +  Q+
Sbjct: 128 -KKAPGHYAVAFGVVAAALGIDLEDALLAFLYAWASNLVSAAVRLIPLGQLDGQKILAQL 186

Query: 218 AFVAEAMLKKWKDRAVEEACQTSPLLDTVQGCHAYLFSRLFCS 260
             + EA  ++     +++    +P LD     H   +SRLF S
Sbjct: 187 EPLIEAAAEQAALLDLDDLGSAAPGLDIAAMRHETQYSRLFRS 229

Length = 229

>gnl|CDD|216668 pfam01730, UreF, UreF

 Score = 57.6 bits (140), Expect = 2e-10
 Identities = 37/145 (25%), Positives = 64/145 (44%), Gaps = 13/145 (8%)

Query: 69  LISSPDDLRTYVIHILE-NTGSLLLPFV---CTATTSPDLETWHKLDRMLDATLTNEVSR 124
           L++    LR ++   L      L  P +     A  + DL+   +LD +L A+      R
Sbjct: 1   LVTDAASLRDWLEDQLRHGLARLDAPLLARAYRAAEAGDLDALAELDDLLLASRETAELR 60

Query: 125 KASTAQGSALLRVAASVFTEVPSLKKMREISLNFGDVAFHHAPLFGIICGLLGLHRGTSQ 184
             S   G ALL++ A ++ +    +         G+ A H+   FG+    LG+    + 
Sbjct: 61  LESRQMGRALLKLLAELWGDEYLERIAE------GNAAGHYPVAFGLAAAALGIPLEEAL 114

Query: 185 RAYMFITLRDIISAATRLNLVGPLG 209
            AY++  + +++SAA RL    PLG
Sbjct: 115 LAYLYAWVENLVSAAVRL---VPLG 136

This family consists of the Urease accessory protein UreF. The urease enzyme (urea amidohydrolase) hydrolyses urea into ammonia and carbamic acid. UreF is proposed to modulate the activation process of urease by eliminating the binding of nickel irons to noncarbamylated protein. Length = 150

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	260
COG0830	229	UreF Urease accessory protein UreF [Posttranslatio	100.0
PF01730	146	UreF: UreF; InterPro: IPR002639 This family consis	100.0

>COG0830 UreF Urease accessory protein UreF [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.1e-64  Score=443.19  Aligned_cols=224  Identities=26%  Similarity=0.311  Sum_probs=212.8

Q ss_pred             cCchHHHHHHHhccCCCChhhhhhhhhHHHHHHcCCCCCHHHHHHHHHHHHHH-hhhcHHHHHHHhhcC---CChhhHHH
Q 046367           34 VELPLHWSEWQLLDSILPTGGFAHSFGLEAAIQARLISSPDDLRTYVIHILEN-TGSLLLPFVCTATTS---PDLETWHK  109 (260)
Q Consensus        34 ~~~~~~l~LlqL~DsafPiG~Fa~S~GLE~av~~g~V~d~~~l~~~l~~~L~~-~~~~~~~~~~~a~~~---~d~~~l~~  109 (260)
                      +++..+++||||+||+||||+|+||+|||+||++|+|+|.++|++|++.+|.+ ....|.++++++|++   +|.+++.+
T Consensus         2 ~~~~~ll~ll~l~dsafPvGafs~S~GLEtai~~g~V~d~~tl~~wl~~~L~~~~~~~d~~~l~~~~~a~~~~d~~~~~~   81 (229)
T COG0830           2 PSMTSLLRLLQLADSAFPVGAFSYSFGLETAIQAGIVTDAATLEAWLKTQLNQGLLYNDALLLALAYRALLDDDAEALLE   81 (229)
T ss_pred             CcHHHHHHHHHhcCccCCcccccccccHHHHHHcCccCCHHHHHHHHHHHHHHhhccchHHHHHHHHHhhhcccHHHHHH
Confidence            35677999999999999999999999999999999999999999999999987 788899999998884   56778889


Q ss_pred             HHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHhcCCCCCCccHHHHHHHHHHcCCChHHHHHHHHH
Q 046367          110 LDRMLDATLTNEVSRKASTAQGSALLRVAASVFTEVPSLKKMREISLNFGDVAFHHAPLFGIICGLLGLHRGTSQRAYMF  189 (260)
Q Consensus       110 ld~~l~A~~~~~e~R~aS~~~G~~ll~l~~~l~~~~~~l~~~~~~v~~~~~~g~h~ava~g~~~~~lgi~~~~al~~~ly  189 (260)
                      +|+++.+++.++|.|++|++||++|++++..++++ +. .+|.+.++.++.++ ||||+||++++++||++++++.+|+|
T Consensus        82 ~d~~~~a~~~~rE~R~~s~~mG~~l~~l~~~~~~~-~~-~~~~e~i~~~~~~~-~~ava~g~va~~~gi~~~~al~a~ly  158 (229)
T COG0830          82 ADELLFAQKLARELREESRRMGRALLKLARALWED-DP-SAWLERIPQKKAPG-HYAVAFGVVAAALGIDLEDALLAFLY  158 (229)
T ss_pred             HHHHHHhhcccHHHHHHHHHHHHHHHHHHHHhccC-Cc-HHHHHHhcccCCCC-cchHHHHHHHHHcCCCHHHHHHHHHH
Confidence            99999999999999999999999999999999875 33 77999999888887 99999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHhcCChhhhhcccHHHHHHHhccccccccccCC
Q 046367          190 ITLRDIISAATRLNLVGPLGAAVLQHQIAFVAEAMLKKWKDRAVEEACQTSPLLDTVQGCHAYLFSRLFCS  260 (260)
Q Consensus       190 ~~~~~lvsAAvRL~plGq~~gQ~iL~~l~~~i~~~~~~~~~~~~~~l~~~~P~ldias~~He~l~sRLF~S  260 (260)
                      ++++|+|+|||||+||||++||+|++++.|.|...++++...+++|+|+++|++||++|+||++|||||||
T Consensus       159 a~~~~lv~aavRlipLgQ~~gq~il~~l~~~~~~~~~~~~~~~~~dl~s~~p~ldi~am~HEt~~sRLF~S  229 (229)
T COG0830         159 AWASNLVSAAVRLIPLGQLDGQKILAQLEPLIEAAAEQAALLDLDDLGSAAPGLDIAAMRHETQYSRLFRS  229 (229)
T ss_pred             HHHHHHHHHHHHhcccCcHHHHHHHHHhhHHHHHHHHHHHhCCHHHhhcccHHHHHHHHHHhhhccccccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999998

>PF01730 UreF: UreF; InterPro: IPR002639 This family consists of the urease accessory protein, UreF

Probab=100.00  E-value=8.1e-34  Score=234.84  Aligned_cols=142  Identities=26%  Similarity=0.375  Sum_probs=121.7

Q ss_pred             CCCCHHHHHHHHHHHHH-HhhhcHHHHHHHhhcC---CChhhHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhccC
Q 046367           69 LISSPDDLRTYVIHILE-NTGSLLLPFVCTATTS---PDLETWHKLDRMLDATLTNEVSRKASTAQGSALLRVAASVFTE  144 (260)
Q Consensus        69 ~V~d~~~l~~~l~~~L~-~~~~~~~~~~~~a~~~---~d~~~l~~ld~~l~A~~~~~e~R~aS~~~G~~ll~l~~~l~~~  144 (260)
                      +|+|.+++++||+++|. +...+|++++..+|++   +|.+.+.++|+++.++++++|.|++|++||++|++++++    
T Consensus         1 ~V~d~~~l~~~l~~~L~~~~~~~d~~~l~~a~~a~~~~d~~~l~~ld~~l~A~~~~~e~R~as~~~G~~ll~~~~~----   76 (146)
T PF01730_consen    1 WVRDAESLKDWLRDYLRHGLARFDLPALAAAYRAAKAGDLEALAELDRLLDASKLSRELREASRQMGRALLRLARE----   76 (146)
T ss_dssp             SS-SHHHHHHHHHHHHTTHHHHTHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH--SHHHHHHHHHHHHHHHHHHHH----
T ss_pred             CcCCHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHH----
Confidence            69999999999999999 5899999999998874   789999999999999999999999999999999999886    


Q ss_pred             chhHHHHHHHHhcCCCCCCccHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHH
Q 046367          145 VPSLKKMREISLNFGDVAFHHAPLFGIICGLLGLHRGTSQRAYMFITLRDIISAATRLNLVGPLGAAVLQHQIAFV  220 (260)
Q Consensus       145 ~~~l~~~~~~v~~~~~~g~h~ava~g~~~~~lgi~~~~al~~~ly~~~~~lvsAAvRL~plGq~~gQ~iL~~l~~~  220 (260)
                           +|.+.+.++...| |||||||++++.+||++++++.+|+|++++|+|+|||||+||||++||++|+++.|.
T Consensus        77 -----~~~~~~~~~~~~~-~~~vv~g~~~~~~gi~~~~a~~~~l~~~~~~~vsAavRL~plGq~~gQ~~L~~L~p~  146 (146)
T PF01730_consen   77 -----EYLDAVAEGQAPG-HYPVVFGLVAAALGIDLEQALLAYLYSWASNLVSAAVRLIPLGQTEGQRILAQLQPA  146 (146)
T ss_dssp             -----HHHHHHHHH-SS---HHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHTHH-
T ss_pred             -----HHHHHHHhcCCCC-cHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhcCC
Confidence                 3566677777777 999999999999999999999999999999999999999999999999999999883

The urease enzyme (urea amidohydrolase) hydrolyses urea into ammonia and carbamic acid []. UreF is proposed to modulate the activation process of urease by eliminating the binding of nickel irons to noncarbamylated protein [].; GO: 0016151 nickel ion binding, 0006807 nitrogen compound metabolic process; PDB: 3SF5_A 3CXN_B 2WGL_A 3O1Q_B.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	260
3o1q_A	254	Native Crystal Structure Of Helicobacter Pylori Ure		3e-04
3cxn_A	274	Structure Of The Urease Accessory Protein Uref From		4e-04
2wgl_A	254	Crystal Structure Of Helicobactor Pylori Uref Lengt		6e-04

>pdb|3O1Q|A Chain A, Native Crystal Structure Of Helicobacter Pylori Urease Accessory Protein Uref Length = 254

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 61/260 (23%), Positives = 102/260 (39%), Gaps = 30/260 (11%)
Query: 12  VGGPPEASTEANVSHGKEKQASVELPLHWSEWQLLDSILPTGGFAHSFGLEAAIQARLIS 71
           VG PP+     N +H         +   +   Q+ D++ P G + HSFGLE  IQ + ++
Sbjct: 14  VGMPPKTPKTDNNAH---------VDNEFLILQVNDAVFPIGSYTHSFGLETYIQQKKVT 64
Query: 72  SPDDLRTYVIHILENTGSLLLPFVCTATTSPDLETWHKLDRMLDATLTNEVSRKASTAQG 131
           + +    Y+        +L   F+ T   S  L     L + L   L  E     ST+  
Sbjct: 65  NKESALEYL------KANLSSQFLYTEMLSLKLTYESALQQDLKKILGVEEVIMLSTSPM 118
Query: 132 SALLRVAASVFTE--VPSLKKMREISLN--FGDVAFH-----HAPLFGIICGLLGLHRGT 182
              LR+A        + +L+ M E+ +   F   A       HA  +G+    LG+    
Sbjct: 119 E--LRLANQKLGNRFIKTLQAMNELDMGEFFNAYAQKTKDPTHATSYGVFAASLGIELKK 176
Query: 183 SQRAYMFITLRD-IISAATRLNLVGPLGAAV-LQHQIAFVAEAMLKKWKDRAVEEACQTS 240
           + R Y++    + +I+    + L    G  + L  Q  F    +++K  +      C  S
Sbjct: 177 ALRHYLYAQTSNMVINCVKSVPLSQNDGQKILLSLQSPF--NQLIEKTLELDESHLCTAS 234
Query: 241 PLLDTVQGCHAYLFSRLFCS 260
              D     H  L+SRL+ S
Sbjct: 235 VQNDIKAMQHESLYSRLYMS 254

>pdb|3CXN|A Chain A, Structure Of The Urease Accessory Protein Uref From Helicobacter Pylori Length = 274

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 54/255 (21%), Positives = 101/255 (39%), Gaps = 20/255 (7%)
Query: 12  VGGPPEASTEANVSHGKEKQASVELPLHWSEWQLLDSILPTGGFAHSFGLEAAIQARLIS 71
           VG PP+     N +H         +   +   Q+ D++ P G + HSFGLE  IQ + ++
Sbjct: 34  VGXPPKTPKTDNNAH---------VDNEFLILQVNDAVFPIGSYTHSFGLETYIQQKKVT 84
Query: 72  SPDDLRTYVIHILEN----TGSLLLPFVCTATTSPDLETWHKLDRMLDATLTNEVSRKAS 127
           + +    Y+   L +    T  L L     +    DL+    ++ ++  + +    R A+
Sbjct: 85  NKESALEYLKANLSSQFLYTEXLSLKLTYESALQQDLKKILGVEEVIXLSTSPXELRLAN 144
Query: 128 TAQGSALLRVAASVFTEVPSLKKMREISLNFGDVAFHHAPLFGIICGLLGLHRGTSQRAY 187
              G+  ++   +   E+   +     +    D    HA  +G+    LG+    + R Y
Sbjct: 145 QKLGNRFIKTLQAX-NELDXGEFFNAYAQKTKDPT--HATSYGVFAASLGIELKKALRHY 201
Query: 188 MFI-TLRDIISAATRLNLVGPLGAAV-LQHQIAFVAEAMLKKWKDRAVEEACQTSPLLDT 245
           ++  T   +I+    + L    G  + L  Q  F    +++K  +      C  S   D 
Sbjct: 202 LYAQTSNXVINCVKSVPLSQNDGQKILLSLQSPF--NQLIEKTLELDESHLCTASVQNDI 259
Query: 246 VQGCHAYLFSRLFCS 260
               H  L+SRL+ S
Sbjct: 260 KAXQHESLYSRLYXS 274

>pdb|2WGL|A Chain A, Crystal Structure Of Helicobactor Pylori Uref Length = 254

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 54/255 (21%), Positives = 101/255 (39%), Gaps = 20/255 (7%)
Query: 12  VGGPPEASTEANVSHGKEKQASVELPLHWSEWQLLDSILPTGGFAHSFGLEAAIQARLIS 71
           VG PP+     N +H         +   +   Q+ D++ P G + HSFGLE  IQ + ++
Sbjct: 14  VGXPPKTPKTDNNAH---------VDNEFLILQVNDAVFPIGSYTHSFGLETYIQQKKVT 64
Query: 72  SPDDLRTYVIHILEN----TGSLLLPFVCTATTSPDLETWHKLDRMLDATLTNEVSRKAS 127
           + +    Y+   L +    T  L L     +    DL+    ++ ++  + +    R A+
Sbjct: 65  NKESALEYLKANLSSQFLYTEXLSLKLTYESALQQDLKKILGVEEVIXLSTSPXELRLAN 124
Query: 128 TAQGSALLRVAASVFTEVPSLKKMREISLNFGDVAFHHAPLFGIICGLLGLHRGTSQRAY 187
              G+  ++   +   E+   +     +    D    HA  +G+    LG+    + R Y
Sbjct: 125 QKLGNRFIKTLQAX-NELDXGEFFNAYAQKTKDPT--HATSYGVFAASLGIELKKALRHY 181
Query: 188 MFI-TLRDIISAATRLNLVGPLGAAV-LQHQIAFVAEAMLKKWKDRAVEEACQTSPLLDT 245
           ++  T   +I+    + L    G  + L  Q  F    +++K  +      C  S   D 
Sbjct: 182 LYAQTSNXVINCVKSVPLSQNDGQKILLSLQSPF--NQLIEKTLELDESHLCTASVQNDI 239
Query: 246 VQGCHAYLFSRLFCS 260
               H  L+SRL+ S
Sbjct: 240 KAXQHESLYSRLYXS 254

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	260
3cxn_A	274	Urease accessory protein UREF; helical, nickel, ch	5e-36
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04

>3cxn_A Urease accessory protein UREF; helical, nickel, chaperone; HET: MSE; 1.55A {Helicobacter pylori} PDB: 3o1q_A 2wgl_A 3sf5_A Length = 274

 Score =  128 bits (322), Expect = 5e-36
 Identities = 45/259 (17%), Positives = 94/259 (36%), Gaps = 10/259 (3%)

Query: 9   SFHVGGPPEASTEANV---SHGKEKQASVELPLHWSEWQLLDSILPTGGFAHSFGLEAAI 65
           S    G    STE +V       +   +  +   +   Q+ D++ P G + HSFGLE  I
Sbjct: 19  SHMDKGKSVKSTEKSVGMPPKTPKTDNNAHVDNEFLILQVNDAVFPIGSYTHSFGLETYI 78

Query: 66  QARLISSPDDLRTYVIHILEN----TGSLLLPFVCTATTSPDLETWHKLDRMLDATLTNE 121
           Q + +++ +    Y+   L +    T  L L     +    DL+    ++ ++  + +  
Sbjct: 79  QQKKVTNKESALEYLKANLSSQFLYTEMLSLKLTYESALQQDLKKILGVEEVIMLSTSPM 138

Query: 122 VSRKASTAQGSALLRVAASVFTEVPSLKKMREISLNFGDVAFHHAPLFGIICGLLGLHRG 181
             R A+   G+  ++   ++                       HA  +G+    LG+   
Sbjct: 139 ELRLANQKLGNRFIKTLQAMNELDMGEFFNA---YAQKTKDPTHATSYGVFAASLGIELK 195

Query: 182 TSQRAYMFITLRDIISAATRLNLVGPLGAAVLQHQIAFVAEAMLKKWKDRAVEEACQTSP 241
            + R Y++    +++    +   +       +   +      +++K  +      C  S 
Sbjct: 196 KALRHYLYAQTSNMVINCVKSVPLSQNDGQKILLSLQSPFNQLIEKTLELDESHLCTASV 255

Query: 242 LLDTVQGCHAYLFSRLFCS 260
             D     H  L+SRL+ S
Sbjct: 256 QNDIKAMQHESLYSRLYMS 274

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.5 bits (104), Expect = 2e-05
 Identities = 36/287 (12%), Positives = 73/287 (25%), Gaps = 90/287 (31%)

Query: 15  PPEASTEANVSH---GKEKQASVELPLHWSEWQLLDSILPTGGFAHSFGLEAAIQARLIS 71
           P E  T          +  +   +    W  W+ ++             L   I++ L  
Sbjct: 319 PREVLTTNPRRLSIIAESIR---DGLATWDNWKHVNCD----------KLTTIIESSLNV 365

Query: 72  -SPDDLRTY----VI-----HILENTGSLLLPFVCTATTSPDLETWHKLDRMLDATLTNE 121
             P + R       +     HI     SL+               W  + +     + N+
Sbjct: 366 LEPAEYRKMFDRLSVFPPSAHIPTILLSLI---------------WFDVIKSDVMVVVNK 410

Query: 122 VSRKASTAQGSALLRVAASVFTEVPSLKKMREISLNFGDVAFHHA--------------- 166
           + +       S + +        +PS+    E+ +   +    H                
Sbjct: 411 LHKY------SLVEKQPKESTISIPSI--YLELKVKLENEYALHRSIVDHYNIPKTFDSD 462

Query: 167 -----PLFGIICGLLGLHRGTSQRAYMFITLRD-----------IISAATRLNLVGPLGA 210
                 L       +G H    +        R            I   +T  N  G +  
Sbjct: 463 DLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILN 522

Query: 211 AVLQHQI--AFVA------EAMLKKWKD--RAVEEACQTSPLLDTVQ 247
            + Q +    ++       E ++    D    +EE    S   D ++
Sbjct: 523 TLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLR 569

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.6 bits (94), Expect = 4e-04
 Identities = 23/176 (13%), Positives = 49/176 (27%), Gaps = 25/176 (14%)

Query: 76  LRTYVIHILENTGSLLLPFVCTATTSPDLETWHKLDRMLDATLTNEVSRKASTAQGSALL 135
             +Y +    +     L      +    LE   KL   +D   T+     ++       +
Sbjct: 171 CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI 230

Query: 136 RVAASVFTEVPSLKKMREISLNFGDVA-FHHAPLFGIICGLLGLHRGTSQRAYMFITLRD 194
           +       +    +    + L   +V        F + C +L             +T R 
Sbjct: 231 QAELRRLLKSKPYENCLLV-LL--NVQNAKAWNAFNLSCKIL-------------LTTRF 274

Query: 195 IISAATRLNLVGPLGAAVLQHQIAFV---AEAMLKKWKDRAV----EEACQTSPLL 243
                  L+       ++  H +       +++L K+ D        E   T+P  
Sbjct: 275 K-QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR 329

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	260
3cxn_A	274	Urease accessory protein UREF; helical, nickel, ch	100.0

>3cxn_A Urease accessory protein UREF; helical, nickel, chaperone; HET: MSE; 1.55A {Helicobacter pylori} PDB: 3o1q_A 2wgl_A 3sf5_A

Probab=100.00  E-value=5.9e-63  Score=445.91  Aligned_cols=218  Identities=17%  Similarity=0.233  Sum_probs=184.7

Q ss_pred             HHHHHhccCCCChhhhhhhhhHHHHHHcCCCCCHHHHHHHHHHHHHH-hhhcHHHHHHHhhc---CCChhhHHHHHHHHH
Q 046367           40 WSEWQLLDSILPTGGFAHSFGLEAAIQARLISSPDDLRTYVIHILEN-TGSLLLPFVCTATT---SPDLETWHKLDRMLD  115 (260)
Q Consensus        40 l~LlqL~DsafPiG~Fa~S~GLE~av~~g~V~d~~~l~~~l~~~L~~-~~~~~~~~~~~a~~---~~d~~~l~~ld~~l~  115 (260)
                      |+||||+||+||||+|+||+|||+||++|+|+|.+++++||+++|++ ...+|++++..+|+   .+|.+.|.+||+++.
T Consensus        53 l~LlqL~DsalPvGaFayS~GLE~av~~G~V~d~~sl~~wL~~~L~~~~~~~d~~~l~~a~~a~~~~d~~~l~~ld~~l~  132 (274)
T 3cxn_A           53 FLILQVNDAVFPIGSYTHSFGLETYIQQKKVTNKESALEYLKANLSSQFLYTEMLSLKLTYESALQQDLKKILGVEEVIM  132 (274)
T ss_dssp             HHHHHHHSTTSSSCCCSTHHHHHHHHHTTSCCSHHHHHHHHHHHHTTHHHHTHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCCcchhHHhhhHHHHHHcCCCCCHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            59999999999999999999999999999999999999999999986 68899998887776   578999999999999


Q ss_pred             hccCcHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHhcCCCCCCccHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Q 046367          116 ATLTNEVSRKASTAQGSALLRVAASVFTEVPSLKKMREISLNFGDVAFHHAPLFGIICGLLGLHRGTSQRAYMFITLRDI  195 (260)
Q Consensus       116 A~~~~~e~R~aS~~~G~~ll~l~~~l~~~~~~l~~~~~~v~~~~~~g~h~ava~g~~~~~lgi~~~~al~~~ly~~~~~l  195 (260)
                      |+++++|.|++|++||++|++++.+++++ + +.+|.+.++.+...+ ||||+||++|+.+||++++++.+|+|++++|+
T Consensus       133 A~~~s~E~R~aS~~~G~aLl~l~~~l~~~-~-~~~~~~~~~~~~~~~-~~pva~g~~a~~~gi~~~~a~~~yl~~~~~n~  209 (274)
T 3cxn_A          133 LSTSPMELRLANQKLGNRFIKTLQAMNEL-D-MGEFFNAYAQKTKDP-THATSYGVFAASLGIELKKALRHYLYAQTSNM  209 (274)
T ss_dssp             HHCCSHHHHHHHHHHHHHHHHHHHHCTTC-C-CHHHHHHHHHHCSSC-CHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred             hcCCCHHHHHHHHHHHHHHHHHHHHHccc-h-hHHHHHHHhcccCCC-chHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999998864 2 346777776666666 99999999999999999999999999999999


Q ss_pred             HHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHhcCChhhhhcccHHHHHHHhccccccccccCC
Q 046367          196 ISAATRLNLVGPLGAAVLQHQIAFVAEAMLKKWKDRAVEEACQTSPLLDTVQGCHAYLFSRLFCS  260 (260)
Q Consensus       196 vsAAvRL~plGq~~gQ~iL~~l~~~i~~~~~~~~~~~~~~l~~~~P~ldias~~He~l~sRLF~S  260 (260)
                      |+|||||+||||++||+||.++.|.|+++++++.+.++||+|+++|++||++|+||++|+|||||
T Consensus       210 vsAAVRL~pLGq~~gQ~iL~~L~~~i~~~~~~a~~~~~ddlg~~aP~ldIas~rHE~~ysRLFrS  274 (274)
T 3cxn_A          210 VINCVKSVPLSQNDGQKILLSLQSPFNQLIEKTLELDESHLCTASVQNDIKAMQHESLYSRLYMS  274 (274)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHHTHHHHHHHHHHHHHCCGGGTTCC---------------------
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhcchHHHHHHHHhcccccccccCC
Confidence            99999999999999999999999999999999999999999999999999999999999999998

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00