Citrus Sinensis ID: 046394

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------38
Protein Sequence
WLMPSEGGYLEAEGVEKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTELHCSKEHGEVLKLQFLLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGTMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHAKTLDFSRKDSGDFSGSHNYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILIPGSGEPNFDSWVANPFETSKQRREKEVHSLLDKLPPETIMLNPSKIGTVREAKKKEKPTKQEREDEMEAAVEAVKGFVWKNKTKGRNKPSKKAKKKQELVAKAKRPFLDQQLKEEQSLSKKKQKLSEE
Secondary Structure (PSIPRED)
ccccccccEEEEcccccEEEEEHHHHHHHHHccccccEEEEEccccccEEEEEcccccEEEEEEccccEEEEcccccEEEEccccccEEEEEEEEEEEEccccEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEEcccEEEEccccEEEEEEcccccEEEEEEccccEEEEEccccEEEEEEcccccEEEEEEcccEEEEccccccEEEEEEccccEEEEEEEEcccccEEEEEEcccEEEEEEcccccccEEEEEccccccHHHHHHHHHHHHHHccccccccccccccEEEEcccccccccHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccccccEcccccccEEEEcHHHHHHHccHHHHHccccccccccccEEEEEcccccEEEEEccccEEEEEccccEEEHHHHHHHHHcccEEEEEEEccccEEEEEEccccHHHEEcccccccccHEEcccccEEEEEEccccEEEEccccEEEEEEccccEEEEEEcccccEEEEEEcccccccccccccccEEEccccEEEEEcccccEEccccccccccEEEEEEEccHHHEEEEccccccEEEEEcccccccccHHcccccccHHHHHHHHHHHHHHHccccHEEcccccccccccccHHHHHHHHHHHHHHccccHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
wlmpseggyleaeGVEKTWRIKQEAIAREVDILSsrnqydimlpelgpytldftssgrymaaagckgypyfynrdgtelhcskehGEVLKLQFLLASINKLGQLRYQNVTMGEIvgnfwtglgrtdvirvnpfngvvslghsggtmlchqgpvsalafhpnghlmatsgkdckikiwdLRKYEVLQTlpghaktldfsrkdsgdfsgshnynrymgysmvkgyqigkvsfrpyedvlgighsmgvsgilipgsgepnfdswvanpfetskQRREKEVHSLldklppetimlnpskigtvreakkkekptkqEREDEMEAAVEAVKGFVWknktkgrnkpskkAKKKQELVAKAKRPFLDQQLKEEQSLSKKKQKLSEE
Flexible Loop (DISEMBL)
wlmpseggyleaegvektWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTELHCSKEHGEVLKLQFLLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGTMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLpghaktldfsrkdsgdfsgSHNYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILIPGSGEPNFDSWVANPFETSKQRREKEVhslldklppetimlnpskigtvreakkkekptkqeredeMEAAVEAVKgfvwknktkgrnkpskkakkkqelvakakrpfldqqlkeeqslskkkqklsee
Low Complexity Region (SEG)
WLMPSEGGYLEAEGVEKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTELHCSKEHGEVLKLQFLLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGTMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHAKTLDFSRKDSGDFSGSHNYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILIPGSGEPNFDSWVANPFETSKQRREKEVHSLLDKLPPETIMLNPSKIGTVREAKKKEKPTKQEREDEMEAAVEAVKGFVWKNKTKGRNKPSkkakkkqelvakakRPFLDqqlkeeqslskkkqklsee
Disordered region (IsUnstruct)
***********AEGVEKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTELHCSKEHGEVLKLQFLLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGTMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHAKTLDF*******FSGSHNYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILIPGSGEPNFDSWVA************************************************************VKGFVW*************************************************
Disordered Region (DISOPRED)
WLMPSEGGYLEAEGVEKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTELHCSKEHGEVLKLQFLLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGTMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHAKTLDFSRKDSGDFSGSHNYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILIPGSGEPNFDSWVANPFETSKQR*EKEVHSLLDKLPPETIMLNPS************************************************************************************
Disordered Region (DISEMBL)
WLMPSEGGYLEAEGVEKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTELHCSKEHGEVLKLQFLLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGTMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHAKTLDFSRKDSGDFSGSHNYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILIPGSGEPNFDSWVANPFET**********SLLDKLPPETIMLNPSKIGTV********************AVEAVKGFVWKNKT*****************AKAKRPFLDQQ*****************
Disordered Region (DISPRO)
WLM**EGGYLEAEGVEKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTELHCSKEHGEVLKLQFLLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGTMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHAKTLDFSRKDSGDFSGSHNYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILIPGSGEPNFDSWVANPFETSKQRREKEVHSLLDKLPPETIMLNPSKIGTVREAKKKEKPTKQERED**E*******************KPSKKAKKKQELVAKAKRPFLDQQLKEEQSLS*********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
WLMPSEGGYLEAEGVEKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTELHCSKEHGEVLKLQFLLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGTMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHAKTLDFSRKDSGDFSGSHNYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILIPGSGEPNFDSWVANPFETSKQRREKEVHSLLDKLPPETIMLNPSKIGTVREAKKKEKPTKQEREDEMEAAVEAVKGFVWKNKTKGRNKPSKKAKKKQELVAKAKRPFxxxxxxxxxxxxxxxxxxxxx
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	378	2.2.26 [Sep-21-2011]
Q5TJE7	612	WD repeat-containing prot	yes	no	0.981	0.606	0.330	5e-56
P40055	554	U3 small nucleolar RNA-as	yes	no	0.970	0.662	0.295	2e-53
Q9P4X3	520	Probable U3 small nucleol	yes	no	0.939	0.682	0.327	3e-53
O15213	610	WD repeat-containing prot	no	no	0.960	0.595	0.322	5e-53
Q9Z0H1	622	WD repeat-containing prot	yes	no	0.952	0.578	0.324	6e-52
Q8BG40	658	Katanin p80 WD40 repeat-c	no	no	0.232	0.133	0.285	3e-07
Q9BVA0	655	Katanin p80 WD40 repeat-c	no	no	0.232	0.134	0.285	4e-07
Q9UNX4	943	WD repeat-containing prot	no	no	0.208	0.083	0.35	3e-06
Q8BHB4	942	WD repeat-containing prot	no	no	0.208	0.083	0.35	3e-06
Q5JTN6	314	WD repeat-containing prot	no	no	0.108	0.130	0.375	6e-06

>sp|Q5TJE7|WDR46_CANFA WD repeat-containing protein 46 OS=Canis familiaris GN=WDR46 PE=3 SV=1

 Score =  218 bits (555), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 148/448 (33%), Positives = 227/448 (50%), Gaps = 77/448 (17%)

Query: 2   LMPSEGGYLEAEGVEKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMA 61
           L+  E G+LE E  E T +I+Q  I   VDI S+   +D+ L + GPY L+++  GR++A
Sbjct: 153 LLAEEPGFLEGEDGEDTAKIRQAEIVEAVDIASAAKHFDLNLRQFGPYRLNYSPVGRHLA 212

Query: 62  AAGCKGYP----------------------------------------YFYNRDGTELHC 81
             G +G+                                         + Y+  G ELHC
Sbjct: 213 FGGHRGHVATLDWVTKRLMCEINVMEAVRDIRFLHSEALFAVAQNRWLHIYDNQGIELHC 272

Query: 82  SKEHGEVLKLQFL-----LASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGV 136
            +    V +L+FL     LA+ ++ G L Y +V++G+IV       GR DV+  NP+N V
Sbjct: 273 IRRCDRVTRLEFLPFHFLLATASETGFLTYLDVSVGKIVAALNARAGRLDVMTKNPYNAV 332

Query: 137 VSLGHSGGT--------------MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLR-K 181
           + LGHS GT              +LCH+G V A+A    G  MATSG D ++KI+DLR  
Sbjct: 333 IHLGHSNGTVSLWSPAMKEPLAKILCHRGGVRAVAVDSTGTYMATSGLDHQLKIFDLRGM 392

Query: 182 YEVL--QTLPGHAKTLDFSRKDSGDFSGSHNYNRYMGYSMV------KGYQIGKVS---- 229
           ++ L  +TLP  A  L FS++       S   N +MG  M       + Y   ++S    
Sbjct: 393 FQPLSARTLPQGAGHLAFSQRGLLAAGMSDVVNIWMGQGMASPPSLEQPYLTHRLSGHVH 452

Query: 230 ---FRPYEDVLGIGHSMGVSGILIPGSGEPNFDSWVANPFETSKQRREKEVHSLLDKLPP 286
              F P+EDVLG+GHS G++ +L+PG+ EPNFD    NP+ + KQR+E EV +LL+K+P 
Sbjct: 453 GLHFCPFEDVLGLGHSGGITSMLVPGAAEPNFDGLENNPYRSQKQRQEWEVKALLEKVPA 512

Query: 287 ETIMLNPSKIGTVREAKKKEKPTKQEREDEMEAAVEAVKGFVWKNKTKGRNKPSKKAKKK 346
           E I L+P  +  V     +++  K+ER + +    EA   F  K K KGR+  +   K++
Sbjct: 513 ELICLDPRALAEVDVISLEQE--KKERIERLGYDPEAKAPFQPKPKQKGRSSTASLVKRR 570

Query: 347 QELVAKAKRPFLDQQLKEEQSLSKKKQK 374
           ++++ K  R  + Q L+++    +KK K
Sbjct: 571 RKVMDKEHRDKVRQSLEQQPQKQEKKAK 598

Canis familiaris (taxid: 9615)

>sp|P40055|UTP7_YEAST U3 small nucleolar RNA-associated protein 7 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UTP7 PE=1 SV=1

 Score =  209 bits (533), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 142/481 (29%), Positives = 232/481 (48%), Gaps = 114/481 (23%)

Query: 1   WLMPSEGGYLEAEG-VEKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRY 59
           +L+P   GYLE E  +EKT++++Q  I   VD+ ++    D+ L E GPY + +  +G +
Sbjct: 65  YLLPESNGYLEPENELEKTFKVQQSEIKSSVDVSTANKALDLSLKEFGPYHIKYAKNGTH 124

Query: 60  MAAAGCKG----------------------------------------YPYFYNRDGTEL 79
           +   G KG                                        Y + Y+ +GTEL
Sbjct: 125 LLITGRKGHVASMDWRKGQLRAELFLNETCHSATYLQNEQYFAVAQKKYTFIYDHEGTEL 184

Query: 80  HCSKEHGEVLKLQFL-----LASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFN 134
           H  K+H E   L FL     L +  + G L+Y +V+ G++V    T  G T  +  NP+N
Sbjct: 185 HRLKQHIEARHLDFLPYHYLLVTAGETGWLKYHDVSTGQLVSELRTKAGPTMAMAQNPWN 244

Query: 135 GVVSLGHSGGT--------------MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLR 180
            V+ LGHS GT              +L  +GPV+++A   +G+ MAT+G D  +KIWD+R
Sbjct: 245 AVMHLGHSNGTVSLWSPSMPEPLVKLLSARGPVNSIAIDRSGYYMATTGADRSMKIWDIR 304

Query: 181 KYEVLQTL-----PGHAKT------LDFSR-------KDSGDFSGS------------HN 210
            ++ L ++     PG   +      L  SR       KD+   SG             H 
Sbjct: 305 NFKQLHSVESLPTPGTNVSISDTGLLALSRGPHVTLWKDALKLSGDSKPCFGSMGGNPHR 364

Query: 211 YNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILIPGSGEPNFDSWVANPFETSK 270
              YM + +  G ++  + F P+ED+LG+GH  G++ +++PG+GE N+D+   NPFET K
Sbjct: 365 NTPYMSH-LFAGNKVENLGFVPFEDLLGVGHQTGITNLIVPGAGEANYDALELNPFETKK 423

Query: 271 QRREKEVHSLLDKLPPETIMLNPSKIGTVREAKKKEKPTKQEREDEMEAAVEAVKGFVWK 330
           QR+E+EV +LL+KLP +TI L+P+ IG+V    K+    +   +D  +  ++A       
Sbjct: 424 QRQEQEVRTLLNKLPADTITLDPNSIGSV---DKRSSTIRLNAKDLAQTTMDA------N 474

Query: 331 NKTKGRN-----KPSKKAK---------KKQELVAKAKRPFLDQQLKEEQSLSKKKQKLS 376
           NK K  +     KP  K K         KK + V   ++  + +QL +E+++ K+  ++ 
Sbjct: 475 NKAKTNSDIPDVKPDVKGKNSGLRSFLRKKTQNVIDERKLRVQKQLDKEKNIRKRNHQIK 534

Query: 377 E 377
           +
Sbjct: 535 Q 535

Involved in nucleolar processing of pre-18S ribosomal RNA.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q9P4X3|UTP7_SCHPO Probable U3 small nucleolar RNA-associated protein 7 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=utp7 PE=3 SV=1

 Score =  209 bits (532), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 150/458 (32%), Positives = 221/458 (48%), Gaps = 103/458 (22%)

Query: 8   GYLEAEGVEKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKG 67
           G LEAEG+E+T++ +Q+ +A  V + ++   + + L + G Y+ D+T  GR +   G KG
Sbjct: 64  GLLEAEGLERTYKFRQDQLAPNVALETATKSFSLDLDKFGGYSFDYTRDGRMILLGGRKG 123

Query: 68  ----------------------------------------YPYFYNRDGTELHCSKEHGE 87
                                                   Y Y Y+  GTE+HC K H E
Sbjct: 124 HISAFDWRTGKLLTELHLRETVRDVKWFHNHQYFAVAQKKYVYVYDNMGTEIHCLKRHIE 183

Query: 88  VLKLQFL-----LASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHS 142
           V  L FL     L SI   G L+YQ+V+ G++V    TG+G + V+  NP N V  +GH+
Sbjct: 184 VNALDFLPYHLLLTSIGNAGYLKYQDVSTGQLVAEHRTGMGASHVLHQNPHNAVEHVGHA 243

Query: 143 GGT--------------MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL 188
            G               ML H+GPV  LA + +G  M T+G D  +K+WDLR Y+ L + 
Sbjct: 244 NGQVTLWSPSSTTPLVKMLTHRGPVRDLAVNRDGRYMVTAGADSLLKVWDLRTYKELHSY 303

Query: 189 --PGHAKTLDFSRKDSGDFS---GSH------------NYNRYMGYSMVKGYQIGKVSFR 231
             P  A+ L  S  D G  +   G H            N+  YM + ++    +  + + 
Sbjct: 304 YTPTPAQRLTLS--DRGLLAVGWGPHATIWKDALRTKQNFP-YMNH-LLPSSSVVDLHYC 359

Query: 232 PYEDVLGIGHSMGVSGILIPGSGEPNFDSWVANPFETSKQRREKEVHSLLDKLPPETIML 291
           PYED+LGIGH+ G   I++PGSGEPN+DS+  +PF + KQR+E EV  LL+KL PE I L
Sbjct: 360 PYEDILGIGHAKGFESIIVPGSGEPNYDSYENDPFASRKQRQETEVRQLLEKLRPEMISL 419

Query: 292 NPSKIGTVREAKKKEKPTKQEREDEMEAAVEAVKGFVWKNKTKGRNKPSKKAKKKQELVA 351
           N   IG V      ++     R+ E E      + +V K K +G+N   ++  +K     
Sbjct: 420 NADFIGNV------DRAAPSLRKAEAEEEKPPEEKWVPKAKARGKNSALRRYLRKH---- 469

Query: 352 KAKRPFLDQ-QLKEEQSLS----------KKKQKLSEE 378
              R  +DQ +LK E+SL           +++QKL EE
Sbjct: 470 --ARNVVDQRRLKVEKSLEIEKKMRAQRVRREQKLPEE 505

Involved in nucleolar processing of pre-18S ribosomal RNA.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|O15213|WDR46_HUMAN WD repeat-containing protein 46 OS=Homo sapiens GN=WDR46 PE=1 SV=3

 Score =  208 bits (530), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 142/440 (32%), Positives = 223/440 (50%), Gaps = 77/440 (17%)

Query: 2   LMPSEGGYLEAEGVEKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMA 61
           L+  E G+LE E  E T +I Q  I   VDI S+   +D+ L + GPY L+++ +GR++A
Sbjct: 152 LLAEEPGFLEGEDGEDTAKICQADIVEAVDIASAAKHFDLNLRQFGPYRLNYSRTGRHLA 211

Query: 62  AAGCKGYP----------------------------------------YFYNRDGTELHC 81
             G +G+                                         + Y+  G ELHC
Sbjct: 212 FGGRRGHVAALDWVTKKLMCEINVMEAVRDIRFLHSEALLAVAQNRWLHIYDNQGIELHC 271

Query: 82  SKEHGEVLKLQFL-----LASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGV 136
            +    V +L+FL     LA+ ++ G L Y +V++G+IV       GR DV+  NP+N V
Sbjct: 272 IRRCDRVTRLEFLPFHFLLATASETGFLTYLDVSVGKIVAALNARAGRLDVMSQNPYNAV 331

Query: 137 VSLGHSGGT--------------MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLR-K 181
           + LGHS GT              +LCH+G V A+A    G  MATSG D ++KI+DLR  
Sbjct: 332 IHLGHSNGTVSLWSPAMKEPLAKILCHRGGVRAVAVDSTGTYMATSGLDHQLKIFDLRGT 391

Query: 182 YEVL--QTLPGHAKTLDFSRKDSGDFSGSHNYNRYMGY------SMVKGYQIGKVS---- 229
           Y+ L  +TLP  A  L FS++           N + G       S+ + Y   ++S    
Sbjct: 392 YQPLSTRTLPHGAGHLAFSQRGLLVAGMGDVVNIWAGQGKASPPSLEQPYLTHRLSGPVH 451

Query: 230 ---FRPYEDVLGIGHSMGVSGILIPGSGEPNFDSWVANPFETSKQRREKEVHSLLDKLPP 286
              F P+EDVLG+GH+ G++ +L+PG+GEPNFD   +NP+ + KQR+E EV +LL+K+P 
Sbjct: 452 GLQFCPFEDVLGVGHTGGITSMLVPGAGEPNFDGLESNPYRSRKQRQEWEVKALLEKVPA 511

Query: 287 ETIMLNPSKIGTVREAKKKEKPTKQEREDEMEAAVEAVKGFVWKNKTKGRNKPSKKAKKK 346
           E I L+P  +  V     ++   K+E+ + +    +A   F  K K KGR+  +   K+K
Sbjct: 512 ELICLDPRALAEVDVISLEQ--GKKEQIERLGYDPQAKAPFQPKPKQKGRSSTASLVKRK 569

Query: 347 QELVAKAKRPFLDQQLKEEQ 366
           ++++ +  R  + Q L+++ 
Sbjct: 570 RKVMDEEHRDKVRQSLQQQH 589

Homo sapiens (taxid: 9606)

>sp|Q9Z0H1|WDR46_MOUSE WD repeat-containing protein 46 OS=Mus musculus GN=Wdr46 PE=2 SV=1

 Score =  204 bits (520), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 142/437 (32%), Positives = 217/437 (49%), Gaps = 77/437 (17%)

Query: 2   LMPSEGGYLEAEGVEKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMA 61
           L+  E G+L  E  E T +I Q  I   VDI S+   +D+ L + GPY L+++ +GR++A
Sbjct: 151 LLAEEPGFLVGEDGEDTAKILQTDIVEAVDIASAAKHFDLNLRQFGPYRLNYSRTGRHLA 210

Query: 62  AAGCKGYP----------------------------------------YFYNRDGTELHC 81
             G +G+                                         Y Y+  G ELHC
Sbjct: 211 LGGRRGHVAALDWVTKKLMCEINVMEAVRDIHFLHSEALLAVAQNRWLYIYDNQGIELHC 270

Query: 82  SKEHGEVLKLQFL-----LASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGV 136
            +    V +L+FL     LA+ ++ G L Y +V++G+IV       GR  V+  NP+N V
Sbjct: 271 IRRCDRVTRLEFLPFHFLLATTSETGFLTYLDVSVGKIVTALNVRAGRLSVMAQNPYNAV 330

Query: 137 VSLGHSGGT--------------MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLR-K 181
           + LGHS GT              +LCH+G V A+A    G  MATSG D ++KI+DLR  
Sbjct: 331 IHLGHSNGTVSLWSPAVKEPLAKILCHRGGVRAVAVDSTGTYMATSGLDHQLKIFDLRGT 390

Query: 182 YEVL--QTLPGHAKTLDFSRKDSGDFSGSHNYNRYMGY------SMVKGYQIGKVS---- 229
           ++ L  +TLP  A  L FS++           N + G       S+ + Y   ++S    
Sbjct: 391 FQPLSSRTLPQGAGHLAFSQRGLLVAGMGDVVNIWAGQGKASPPSLEQPYLTHRLSGHVH 450

Query: 230 ---FRPYEDVLGIGHSMGVSGILIPGSGEPNFDSWVANPFETSKQRREKEVHSLLDKLPP 286
              F P+EDVLG+GHS G + +L+PG+ EPNFD    NP+ + KQR+E EV +LL+K+P 
Sbjct: 451 GLQFCPFEDVLGVGHSGGFTSMLVPGAAEPNFDGLENNPYRSRKQRQEWEVKALLEKVPA 510

Query: 287 ETIMLNPSKIGTVREAKKKEKPTKQEREDEMEAAVEAVKGFVWKNKTKGRNKPSKKAKKK 346
           E I LNP  +  V     +++  K+ER + +    +A   F  K K KGR+  +   K+K
Sbjct: 511 ELICLNPRALAEVDVVTLEQQ--KKERIERLGYDPDAKAAFQPKAKQKGRSSTASLVKRK 568

Query: 347 QELVAKAKRPFLDQQLK 363
           ++++ +  R  + Q L+
Sbjct: 569 KKVMDQEHRDKVRQSLE 585

Mus musculus (taxid: 10090)

>sp|Q8BG40|KTNB1_MOUSE Katanin p80 WD40 repeat-containing subunit B1 OS=Mus musculus GN=Katnb1 PE=1 SV=1

 Score = 56.2 bits (134), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 49/91 (53%), Gaps = 3/91 (3%)

Query: 149 HQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL---PGHAKTLDFSRKDSGDF 205
           H GPV+ + FHPN +L+A+   D  I+ WDL K++V+  +   PG  +++ F+      +
Sbjct: 188 HTGPVNVVEFHPNEYLLASGSSDRTIRFWDLEKFQVVSCIEGEPGPVRSVLFNPDGCCLY 247

Query: 206 SGSHNYNRYMGYSMVKGYQIGKVSFRPYEDV 236
           SG  +  R  G+   + + +  V++    D+
Sbjct: 248 SGCQDSLRVYGWEPERCFDVVLVNWGKVADL 278

Participates in a complex which severs microtubules in an ATP-dependent manner. May act to target the enzymatic subunit of this complex to sites of action such as the centrosome. Microtubule severing may promote rapid reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation. Microtubule release from the mitotic spindle poles may allow depolymerization of the microtubule end proximal to the spindle pole, leading to poleward microtubule flux and poleward motion of chromosome. Microtubule release within the cell body of neurons may be required for their transport into neuronal processes by microtubule-dependent motor proteins. This transport is required for axonal growth.

Mus musculus (taxid: 10090)

>sp|Q9BVA0|KTNB1_HUMAN Katanin p80 WD40 repeat-containing subunit B1 OS=Homo sapiens GN=KATNB1 PE=1 SV=1

 Score = 56.2 bits (134), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 49/91 (53%), Gaps = 3/91 (3%)

Query: 149 HQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL---PGHAKTLDFSRKDSGDF 205
           H GPV+ + FHPN +L+A+   D  I+ WDL K++V+  +   PG  +++ F+      +
Sbjct: 188 HTGPVNVVEFHPNEYLLASGSSDRTIRFWDLEKFQVVSCIEGEPGPVRSVLFNPDGCCLY 247

Query: 206 SGSHNYNRYMGYSMVKGYQIGKVSFRPYEDV 236
           SG  +  R  G+   + + +  V++    D+
Sbjct: 248 SGCQDSLRVYGWEPERCFDVVLVNWGKVADL 278

Participates in a complex which severs microtubules in an ATP-dependent manner. May act to target the enzymatic subunit of this complex to sites of action such as the centrosome. Microtubule severing may promote rapid reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation. Microtubule release from the mitotic spindle poles may allow depolymerization of the microtubule end proximal to the spindle pole, leading to poleward microtubule flux and poleward motion of chromosome. Microtubule release within the cell body of neurons may be required for their transport into neuronal processes by microtubule-dependent motor proteins. This transport is required for axonal growth.

Homo sapiens (taxid: 9606)

>sp|Q9UNX4|WDR3_HUMAN WD repeat-containing protein 3 OS=Homo sapiens GN=WDR3 PE=1 SV=1

 Score = 53.5 bits (127), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 1/80 (1%)

Query: 137 VSLGHSGGTMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHAKTL- 195
           +  G    ++  H   V  L F P  HL  T+GKD KIK WD  K+E +QTL GH + + 
Sbjct: 620 LDFGDCHKSLFAHDDSVMYLQFVPKSHLFFTAGKDHKIKQWDADKFEHIQTLEGHHQEIW 679

Query: 196 DFSRKDSGDFSGSHNYNRYM 215
             +   SGD+  S ++++ +
Sbjct: 680 CLAVSPSGDYVVSSSHDKSL 699

Homo sapiens (taxid: 9606)

>sp|Q8BHB4|WDR3_MOUSE WD repeat-containing protein 3 OS=Mus musculus GN=Wdr3 PE=2 SV=1

 Score = 53.1 bits (126), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 1/80 (1%)

Query: 137 VSLGHSGGTMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHAKTL- 195
           +  G    ++  H   V  L F P  HL  T+GKD KIK WD  K+E +QTL GH + + 
Sbjct: 619 LDFGDCHRSLFAHDDSVMYLRFVPKSHLFFTAGKDHKIKQWDADKFEHIQTLEGHHQEIW 678

Query: 196 DFSRKDSGDFSGSHNYNRYM 215
             +   SGD+  S ++++ +
Sbjct: 679 CLAVSPSGDYVVSASHDKSL 698

Mus musculus (taxid: 10090)

>sp|Q5JTN6|WDR38_HUMAN WD repeat-containing protein 38 OS=Homo sapiens GN=WDR38 PE=2 SV=1

 Score = 52.4 bits (124), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 32/48 (66%)

Query: 149 HQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHAKTLD 196
           H GPV    F P+GHL A++  DC +++WD+ + + L+ L GH ++++
Sbjct: 62  HTGPVKFCRFSPDGHLFASASCDCTVRLWDVARAKCLRVLKGHQRSVE 109

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	378
296090366	536	unnamed protein product [Vitis vinifera]	0.997	0.703	0.679	1e-163
359486916	610	PREDICTED: probable U3 small nucleolar R	0.997	0.618	0.679	1e-163
356576345	535	PREDICTED: probable U3 small nucleolar R	0.992	0.700	0.667	1e-159
356535525	535	PREDICTED: probable U3 small nucleolar R	0.994	0.702	0.659	1e-159
224109894	537	predicted protein [Populus trichocarpa]	1.0	0.703	0.663	1e-157
449442126	536	PREDICTED: probable U3 small nucleolar R	0.997	0.703	0.645	1e-151
255580620	526	WD-repeat protein, putative [Ricinus com	0.957	0.688	0.630	1e-143
297829594	536	transducin family protein [Arabidopsis l	0.989	0.697	0.586	1e-135
30681364	536	transducin/WD40 domain-containing protei	0.989	0.697	0.586	1e-133
12322776	548	hypothetical protein; 61080-58687 [Arabi	0.989	0.682	0.586	1e-133

>gi|296090366|emb|CBI40185.3| unnamed protein product [Vitis vinifera]

 Score =  580 bits (1496), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 305/449 (67%), Positives = 341/449 (75%), Gaps = 72/449 (16%)

Query: 1   WLMPSEGGYLEAEGVEKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYM 60
           WLMPSEGGYLEAEG+EKTWRIKQE+IAREVDILSS+NQYDI+LPELGPYTLDFTSSGRYM
Sbjct: 72  WLMPSEGGYLEAEGIEKTWRIKQESIAREVDILSSKNQYDIVLPELGPYTLDFTSSGRYM 131

Query: 61  AAAGCKG----------------------------------------YPYFYNRDGTELH 80
           A  G KG                                        YPY YNRDGTELH
Sbjct: 132 AVGGRKGHLAIIDMKNMGVIKDFQVRETVRDVVFLHNELFFAAAQKKYPYIYNRDGTELH 191

Query: 81  CSKEHGEVLKLQFL-----LASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNG 135
           C KEHG VLKLQFL     LASINK GQL YQ+VTMGE+VGN+ TGLGRT V++VNPFNG
Sbjct: 192 CLKEHGSVLKLQFLKNHFLLASINKFGQLHYQDVTMGEMVGNYRTGLGRTAVMQVNPFNG 251

Query: 136 VVSLGHSGGT--------------MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRK 181
           VV LGHSGG               MLCH GP+SALAFHPNGHLMAT+G D KIK+WDLRK
Sbjct: 252 VVGLGHSGGIVTMWKPTSSAPLVKMLCHHGPISALAFHPNGHLMATAGMDKKIKLWDLRK 311

Query: 182 YEVLQTLPGHAKTLDFSRKDS------------GDFSGSHNYNRYMGYSMVKGYQIGKVS 229
           +EVLQTLPGHAKTLDFS+K              GDFSG+ NY+RYMG+SM KGYQIGKV 
Sbjct: 312 FEVLQTLPGHAKTLDFSQKGLLATGTGSFVQILGDFSGTENYSRYMGHSMAKGYQIGKVL 371

Query: 230 FRPYEDVLGIGHSMGVSGILIPGSGEPNFDSWVANPFETSKQRREKEVHSLLDKLPPETI 289
           FRPYEDVL IGHSMG S ILIPGSGEPNFDSWVANPFETSKQRREKEVHSLLDKLPPETI
Sbjct: 372 FRPYEDVLSIGHSMGWSCILIPGSGEPNFDSWVANPFETSKQRREKEVHSLLDKLPPETI 431

Query: 290 MLNPSKIGTVREAKKKEKPTKQEREDEMEAAVEAVKGFVWKNKTKGRNKPSKKAKKKQEL 349
           ML+P+KIGTVR+++K+EKPTKQER+ EMEAAVE  K    + K KG+NKPSKK KK++E 
Sbjct: 432 MLDPTKIGTVRQSRKREKPTKQERKAEMEAAVEDAKSIPLRKKMKGKNKPSKKVKKREEA 491

Query: 350 VAKAKRPFLDQQLKEEQSLSKKKQKLSEE 378
           VA+AK+PFL++Q+ EE++LS KKQK+S E
Sbjct: 492 VARAKKPFLERQM-EEENLSTKKQKISGE 519

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359486916|ref|XP_002269978.2| PREDICTED: probable U3 small nucleolar RNA-associated protein 7 [Vitis vinifera]

 Score =  580 bits (1495), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 305/449 (67%), Positives = 341/449 (75%), Gaps = 72/449 (16%)

Query: 1   WLMPSEGGYLEAEGVEKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYM 60
           WLMPSEGGYLEAEG+EKTWRIKQE+IAREVDILSS+NQYDI+LPELGPYTLDFTSSGRYM
Sbjct: 146 WLMPSEGGYLEAEGIEKTWRIKQESIAREVDILSSKNQYDIVLPELGPYTLDFTSSGRYM 205

Query: 61  AAAGCKG----------------------------------------YPYFYNRDGTELH 80
           A  G KG                                        YPY YNRDGTELH
Sbjct: 206 AVGGRKGHLAIIDMKNMGVIKDFQVRETVRDVVFLHNELFFAAAQKKYPYIYNRDGTELH 265

Query: 81  CSKEHGEVLKLQFL-----LASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNG 135
           C KEHG VLKLQFL     LASINK GQL YQ+VTMGE+VGN+ TGLGRT V++VNPFNG
Sbjct: 266 CLKEHGSVLKLQFLKNHFLLASINKFGQLHYQDVTMGEMVGNYRTGLGRTAVMQVNPFNG 325

Query: 136 VVSLGHSGGT--------------MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRK 181
           VV LGHSGG               MLCH GP+SALAFHPNGHLMAT+G D KIK+WDLRK
Sbjct: 326 VVGLGHSGGIVTMWKPTSSAPLVKMLCHHGPISALAFHPNGHLMATAGMDKKIKLWDLRK 385

Query: 182 YEVLQTLPGHAKTLDFSRKDS------------GDFSGSHNYNRYMGYSMVKGYQIGKVS 229
           +EVLQTLPGHAKTLDFS+K              GDFSG+ NY+RYMG+SM KGYQIGKV 
Sbjct: 386 FEVLQTLPGHAKTLDFSQKGLLATGTGSFVQILGDFSGTENYSRYMGHSMAKGYQIGKVL 445

Query: 230 FRPYEDVLGIGHSMGVSGILIPGSGEPNFDSWVANPFETSKQRREKEVHSLLDKLPPETI 289
           FRPYEDVL IGHSMG S ILIPGSGEPNFDSWVANPFETSKQRREKEVHSLLDKLPPETI
Sbjct: 446 FRPYEDVLSIGHSMGWSCILIPGSGEPNFDSWVANPFETSKQRREKEVHSLLDKLPPETI 505

Query: 290 MLNPSKIGTVREAKKKEKPTKQEREDEMEAAVEAVKGFVWKNKTKGRNKPSKKAKKKQEL 349
           ML+P+KIGTVR+++K+EKPTKQER+ EMEAAVE  K    + K KG+NKPSKK KK++E 
Sbjct: 506 MLDPTKIGTVRQSRKREKPTKQERKAEMEAAVEDAKSIPLRKKMKGKNKPSKKVKKREEA 565

Query: 350 VAKAKRPFLDQQLKEEQSLSKKKQKLSEE 378
           VA+AK+PFL++Q+ EE++LS KKQK+S E
Sbjct: 566 VARAKKPFLERQM-EEENLSTKKQKISGE 593

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356576345|ref|XP_003556293.1| PREDICTED: probable U3 small nucleolar RNA-associated protein 7-like [Glycine max]

 Score =  568 bits (1463), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 299/448 (66%), Positives = 336/448 (75%), Gaps = 73/448 (16%)

Query: 1   WLMPSEGGYLEAEGVEKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYM 60
           WLMPSEGGYLEAEG+EKTWRIKQEAIAREVDI SS  QYDI+LPELGPYTLDFTSSGRYM
Sbjct: 72  WLMPSEGGYLEAEGLEKTWRIKQEAIAREVDISSSGKQYDIILPELGPYTLDFTSSGRYM 131

Query: 61  AAAGCKG----------------------------------------YPYFYNRDGTELH 80
           A +G KG                                        YPY YNR+GTELH
Sbjct: 132 AVSGRKGHLGIVDMINLSLIREFQVRETVRDVAFLHNELFFVAAQKKYPYIYNREGTELH 191

Query: 81  CSKEHGEVLKLQFL-----LASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNG 135
           C KEHG VL+LQFL     LASINK GQLRYQ+VTMG +VGNF TGLGRT+V++VNPFNG
Sbjct: 192 CLKEHGPVLRLQFLENHFLLASINKFGQLRYQDVTMGSMVGNFRTGLGRTNVMQVNPFNG 251

Query: 136 VVSLGHSGGT--------------MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRK 181
           VVSLGHSGGT              MLCH GPVSALAFH NGHLMAT+GKD KIK+WDLRK
Sbjct: 252 VVSLGHSGGTVTMWKPTSASPLVKMLCHHGPVSALAFHSNGHLMATAGKDKKIKLWDLRK 311

Query: 182 YEVLQTLPGHAKTLDFSRKDS------------GDFSGSHNYNRYMGYSMVKGYQIGKVS 229
           +EVLQTLPGHA TLDFS+K               D SG+ NY++YM +SMVKGYQIGK+ 
Sbjct: 312 FEVLQTLPGHATTLDFSQKGLLACGNGSLIQVLRDVSGTQNYSKYMTHSMVKGYQIGKLV 371

Query: 230 FRPYEDVLGIGHSMGVSGILIPGSGEPNFDSWVANPFETSKQRREKEVHSLLDKLPPETI 289
           FRPYEDVLGIGHSMG S ILIPG+GEPNFDSWVANPFETSKQRREKE+ SLLDKLPPETI
Sbjct: 372 FRPYEDVLGIGHSMGWSSILIPGAGEPNFDSWVANPFETSKQRREKEIRSLLDKLPPETI 431

Query: 290 MLNPSKIGTVREAKKKEKPTKQEREDEMEAAVEAVKGFVWKNKTKGRNKPSKKAKKKQEL 349
           ML+PSKIGTV+   ++EKPTKQERE E+EA VEA KG   K KTKGRNKP K+ +KKQE 
Sbjct: 432 MLDPSKIGTVK--PRREKPTKQEREAEIEADVEAAKGKKLKKKTKGRNKPGKRVQKKQEA 489

Query: 350 VAKAKRPFLDQQLKEEQSLSKKKQKLSE 377
           VA+ KRP+L+Q+++EE+S+S+KKQK  E
Sbjct: 490 VARVKRPYLEQKIQEEESISRKKQKTRE 517

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356535525|ref|XP_003536295.1| PREDICTED: probable U3 small nucleolar RNA-associated protein 7-like [Glycine max]

 Score =  566 bits (1458), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 296/449 (65%), Positives = 336/449 (74%), Gaps = 73/449 (16%)

Query: 1   WLMPSEGGYLEAEGVEKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYM 60
           WLMPSEGGYLEAEG+EKTWRIKQEAIA EVDI SSR QYDI+LPELGPYTLDFTSSGRYM
Sbjct: 72  WLMPSEGGYLEAEGLEKTWRIKQEAIAHEVDISSSRKQYDIILPELGPYTLDFTSSGRYM 131

Query: 61  AAAGCKG----------------------------------------YPYFYNRDGTELH 80
           A +G KG                                        YPY YNR+GTELH
Sbjct: 132 AVSGRKGHLGIVDMINLSIIREFQVRETVRDVAFLHNELFFAAAQKKYPYIYNREGTELH 191

Query: 81  CSKEHGEVLKLQFL-----LASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNG 135
           C KEHG VL+LQFL     LASINK GQLRYQ+VTMG +VGNF TGLGRT+V++VNPFNG
Sbjct: 192 CLKEHGPVLRLQFLENHFLLASINKFGQLRYQDVTMGSMVGNFRTGLGRTNVMQVNPFNG 251

Query: 136 VVSLGHSGGT--------------MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRK 181
           VVSLGHSGGT              MLCH GPVSALAFH NG LMAT+GKD KIK+WDLRK
Sbjct: 252 VVSLGHSGGTVTMWKPTSASPLVKMLCHHGPVSALAFHSNGLLMATAGKDKKIKLWDLRK 311

Query: 182 YEVLQTLPGHAKTLDFSRKDS------------GDFSGSHNYNRYMGYSMVKGYQIGKVS 229
           +EVLQTLPGHA TLDFS+K               D SG+ NY++YM +SMVKGYQIGK+ 
Sbjct: 312 FEVLQTLPGHANTLDFSQKGLLACGNGSLIQILRDVSGTQNYSKYMTHSMVKGYQIGKLV 371

Query: 230 FRPYEDVLGIGHSMGVSGILIPGSGEPNFDSWVANPFETSKQRREKEVHSLLDKLPPETI 289
           FRPYEDVLGIGHSMG S IL PG+GEPNFDSWVANPFETSKQRREKE+ SLLDKLPPETI
Sbjct: 372 FRPYEDVLGIGHSMGWSSILTPGAGEPNFDSWVANPFETSKQRREKEIRSLLDKLPPETI 431

Query: 290 MLNPSKIGTVREAKKKEKPTKQEREDEMEAAVEAVKGFVWKNKTKGRNKPSKKAKKKQEL 349
           ML+PSKIGTV+   ++E+PTKQERE E+EA VEA KG   K KTKGRNKP K+ +KKQE 
Sbjct: 432 MLDPSKIGTVK--PRRERPTKQEREAEIEAGVEAAKGMKLKKKTKGRNKPGKRVQKKQEA 489

Query: 350 VAKAKRPFLDQQLKEEQSLSKKKQKLSEE 378
           V++ KRP+L+Q+++EE+S+S+KKQK SE+
Sbjct: 490 VSRVKRPYLEQKIQEEESISRKKQKTSED 518

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224109894|ref|XP_002315346.1| predicted protein [Populus trichocarpa] gi|222864386|gb|EEF01517.1| predicted protein [Populus trichocarpa]

 Score =  559 bits (1441), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 298/449 (66%), Positives = 344/449 (76%), Gaps = 71/449 (15%)

Query: 1   WLMPSEGGYLEAEGVEKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYM 60
           WL+PSEGGYLEAEG+EKTWRIKQ+ I REVDI S++NQYDI+LP+ GPYTLDFTSSGRYM
Sbjct: 72  WLLPSEGGYLEAEGIEKTWRIKQDTIGREVDISSAKNQYDIVLPDFGPYTLDFTSSGRYM 131

Query: 61  AAAGCKG----------------------------------------YPYFYNRDGTELH 80
           AAAG KG                                        YPY YNRDG ELH
Sbjct: 132 AAAGRKGHLAVVDMKNMSLIKEMQVRETVRDVVFLHNELFFAAAQKKYPYIYNRDGVELH 191

Query: 81  CSKEHGEVLKLQFL-----LASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNG 135
           C KEHG V +LQFL     LASINK GQLRYQ+VTMGE++ NF TGLGRTDV++ NPFNG
Sbjct: 192 CLKEHGAVTRLQFLKNHFLLASINKFGQLRYQDVTMGEMISNFRTGLGRTDVMQANPFNG 251

Query: 136 VVSLGHSGGT--------------MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRK 181
           VV+LGHSGGT              MLCH GP++A+AFHP+GHLMATSGK+ KIKIWD+RK
Sbjct: 252 VVALGHSGGTVSMWKPTSAVPLVKMLCHPGPITAMAFHPDGHLMATSGKEKKIKIWDVRK 311

Query: 182 YEVLQTLPGHAKTLDFSRKD------------SGDFSGSHNYNRYMGYSMVKGYQIGKVS 229
           +EVLQT+ GHAKTLDFS+K              GDFSGS NY+R+MG+S+VKGYQIGKV+
Sbjct: 312 FEVLQTIRGHAKTLDFSQKGLLAAGTGSFVQVFGDFSGSRNYSRHMGHSIVKGYQIGKVA 371

Query: 230 FRPYEDVLGIGHSMGVSGILIPGSGEPNFDSWVANPFETSKQRREKEVHSLLDKLPPETI 289
           FRPYEDVLGIGHS G S ILIPGSGEPNFD+W+ANPFET+KQRREKE+HSLLDKLPPETI
Sbjct: 372 FRPYEDVLGIGHSTGWSSILIPGSGEPNFDTWLANPFETTKQRREKEIHSLLDKLPPETI 431

Query: 290 MLNPSKIGTVREAKKKEKPTKQEREDEMEAAVEAVKGFVWKNKTKGRNKPSKKAKKKQEL 349
           ML+PSKIGTV+ AKKKEKPTK+E E +MEAAVEA KG   KNKTKG+NKPSK A KK+E+
Sbjct: 432 MLDPSKIGTVKSAKKKEKPTKKEMEADMEAAVEAAKGTAIKNKTKGKNKPSKIAVKKKEI 491

Query: 350 VAKAKRPFLDQQLKEEQSLSKKKQKLSEE 378
           V +AK+PFLDQQ+KEE+ ++KKKQK+SEE
Sbjct: 492 VVRAKKPFLDQQMKEEEKVAKKKQKISEE 520

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449442126|ref|XP_004138833.1| PREDICTED: probable U3 small nucleolar RNA-associated protein 7-like [Cucumis sativus] gi|449528879|ref|XP_004171429.1| PREDICTED: probable U3 small nucleolar RNA-associated protein 7-like [Cucumis sativus]

 Score =  541 bits (1395), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 290/449 (64%), Positives = 330/449 (73%), Gaps = 72/449 (16%)

Query: 1   WLMPSEGGYLEAEGVEKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYM 60
           WLMPSEGGYLE EG+EKTWRIKQE I+ EVDILS RNQ+DI+LP LGPY++D+TS+GRYM
Sbjct: 72  WLMPSEGGYLETEGLEKTWRIKQETISHEVDILSRRNQHDIILPALGPYSIDYTSNGRYM 131

Query: 61  AAAGCKG----------------------------------------YPYFYNRDGTELH 80
           A AG KG                                        YPY YNR+GTELH
Sbjct: 132 AIAGRKGHLALVDMKDLNLIKEFQVKETVRDVVFLHNELFFAAAQKKYPYIYNREGTELH 191

Query: 81  CSKEHGEVLKLQFL-----LASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNG 135
           C KEHG V +LQFL     L SINK GQL YQ+VT G +VG+F TGLGRTDV++VNPFNG
Sbjct: 192 CLKEHGSVRRLQFLKNHFLLVSINKFGQLHYQDVTTGSMVGSFRTGLGRTDVMQVNPFNG 251

Query: 136 VVSLGHSGGT--------------MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRK 181
           V++ GHSGG+              MLCH GPVSALAFHPNGHLMATSG + KIK+WDLRK
Sbjct: 252 VIATGHSGGSVAMWKPTSSAPLVKMLCHPGPVSALAFHPNGHLMATSGAERKIKLWDLRK 311

Query: 182 YEVLQTLPGHAKTLDFSRKDS------------GDFSGSHNYNRYMGYSMVKGYQIGKVS 229
           +EVLQTLPGHAKTLDFS+K              GDFSG+ NYNRYM +SM KGYQIGK+ 
Sbjct: 312 FEVLQTLPGHAKTLDFSQKGLLAYGTGSFVQILGDFSGAQNYNRYMAHSMAKGYQIGKIL 371

Query: 230 FRPYEDVLGIGHSMGVSGILIPGSGEPNFDSWVANPFETSKQRREKEVHSLLDKLPPETI 289
           FRPYEDVLGIGHSMG S ILIPGSGEPNFD+WVANPFETSKQRREKEV SLLDKLPPETI
Sbjct: 372 FRPYEDVLGIGHSMGWSSILIPGSGEPNFDTWVANPFETSKQRREKEVRSLLDKLPPETI 431

Query: 290 MLNPSKIGTVREAKKKEKPTKQEREDEMEAAVEAVKGFVWKNKTKGRNKPSKKAKKKQEL 349
            LNP+KIGT+   KKKEK TK+ER+ E EAAV+A KG   K KTKGRNKP+K+ KKK E+
Sbjct: 432 SLNPTKIGTLMAVKKKEKKTKKERDAEEEAAVDAAKGITMKKKTKGRNKPTKREKKKHEI 491

Query: 350 VAKAKRPFLDQQLKEEQSLSKKKQKLSEE 378
           + KAKRPFL +Q+KEE+ LS+KK +LSEE
Sbjct: 492 IEKAKRPFLHEQIKEEE-LSRKKSRLSEE 519

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255580620|ref|XP_002531133.1| WD-repeat protein, putative [Ricinus communis] gi|223529282|gb|EEF31253.1| WD-repeat protein, putative [Ricinus communis]

 Score =  513 bits (1320), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 273/433 (63%), Positives = 310/433 (71%), Gaps = 71/433 (16%)

Query: 1   WLMPSEGGYLEAEGVEKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYM 60
           WL+PS GGYLEAEG EKTWRIKQ+ I  E+DI S +  +D+ LP+LGPYTLDFTS+GRYM
Sbjct: 61  WLLPSTGGYLEAEGTEKTWRIKQDDILSEIDISSLKKPHDLKLPDLGPYTLDFTSNGRYM 120

Query: 61  AAAGCKG----------------------------------------YPYFYNRDGTELH 80
           A AG KG                                        YPY Y RDGTELH
Sbjct: 121 ALAGRKGHLAVVDMMSMSLIKEMQVREKVRDIVFLHNELFFAAAQKKYPYIYYRDGTELH 180

Query: 81  CSKEHGEVLKLQFL-----LASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNG 135
           C + HG VL+LQFL     LASINKLGQL YQ++TMG ++GN  TGLGRTDV+ VNPFN 
Sbjct: 181 CLEGHGAVLRLQFLRNHFLLASINKLGQLHYQDITMGGMIGNIRTGLGRTDVMEVNPFNA 240

Query: 136 VVSLGHSGG--------------TMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRK 181
           VV+LGH+GG               MLCH GPV A+AFHPNGHLMATSG + KIKIWDLRK
Sbjct: 241 VVALGHAGGRVTMWKPTSAAPLIKMLCHPGPVLAMAFHPNGHLMATSGMERKIKIWDLRK 300

Query: 182 YEVLQTLPGHAKTLDFSR------------KDSGDFSGSHNYNRYMGYSMVKGYQIGKVS 229
           +EVLQT+PGHAKTLDFS+            +  GDFSGS +Y+RYMG+ MVKGY+I KV 
Sbjct: 301 FEVLQTIPGHAKTLDFSQNGLLATGTGSYVQILGDFSGSQSYSRYMGHPMVKGYEIRKVL 360

Query: 230 FRPYEDVLGIGHSMGVSGILIPGSGEPNFDSWVANPFETSKQRREKEVHSLLDKLPPETI 289
           FRPYEDVLGIGHSMG S IL PGSGEPNFDSW+ANPFETSKQRREKEV +LLDKLPPETI
Sbjct: 361 FRPYEDVLGIGHSMGWSSILTPGSGEPNFDSWLANPFETSKQRREKEVRTLLDKLPPETI 420

Query: 290 MLNPSKIGTVREAKKKEKPTKQEREDEMEAAVEAVKGFVWKNKTKGRNKPSKKAKKKQEL 349
           ML+PSKIGTVR  KK++KPTKQE   EMEAAVEAVK    KNKTKGR+K S K KK++EL
Sbjct: 421 MLDPSKIGTVRPVKKRDKPTKQEIAAEMEAAVEAVKDVAVKNKTKGRSKASNKLKKRKEL 480

Query: 350 VAKAKRPFLDQQL 362
           + K KRPFLDQQ+
Sbjct: 481 IDKVKRPFLDQQM 493

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297829594|ref|XP_002882679.1| transducin family protein [Arabidopsis lyrata subsp. lyrata] gi|297328519|gb|EFH58938.1| transducin family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  487 bits (1253), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 265/452 (58%), Positives = 312/452 (69%), Gaps = 78/452 (17%)

Query: 1   WLMPSEGGYLEAEGVEKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYM 60
           WL+P+E GYLE EG+EKTWR+KQ  IA EVDILSSRNQYDI+LP+ GPY LDFT+SGR+M
Sbjct: 73  WLLPAEAGYLETEGLEKTWRVKQSDIANEVDILSSRNQYDIVLPDFGPYKLDFTASGRHM 132

Query: 61  AAAGCKG----------------------------------------YPYFYNRDGTELH 80
            A G KG                                        Y Y Y RDGTELH
Sbjct: 133 LAGGRKGHLALLDMMNMSLIKEIQVRETVRDVAFLHNEQFFAAAQKKYAYIYGRDGTELH 192

Query: 81  CSKEHGEVLKLQFL-----LASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNG 135
           C KE G V +L+FL     LAS+NK GQL YQ+VT G +V +  TG GRTDV+ VNP+NG
Sbjct: 193 CLKERGPVARLRFLKNHFLLASVNKSGQLHYQDVTHGGMVASIRTGKGRTDVMEVNPYNG 252

Query: 136 VVSLGHSGGT--------------MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRK 181
           VV+LGHSGGT              M CH GPVS++AFHPNGHLMATSGK+ KIKIWDLRK
Sbjct: 253 VVALGHSGGTVTMWKPTSQAPLVQMQCHPGPVSSVAFHPNGHLMATSGKERKIKIWDLRK 312

Query: 182 YEVLQTLPG-HAKTLDFSRKDS------------GDFSG--SHNYNRYMGYSMVKGYQIG 226
           +E +QT+   HAKTL FS+K              GD SG  SHNY+RYM +SMVKGYQI 
Sbjct: 313 FEEVQTIHSFHAKTLSFSQKGLLAAGTGSFVQILGDSSGGSSHNYSRYMNHSMVKGYQIE 372

Query: 227 KVSFRPYEDVLGIGHSMGVSGILIPGSGEPNFDSWVANPFETSKQRREKEVHSLLDKLPP 286
           K+ FRPYEDV+GIGHSMG S ILIPGSGEPNFDSWVANPFETSKQRREKEVHSLLDKLPP
Sbjct: 373 KLMFRPYEDVIGIGHSMGWSSILIPGSGEPNFDSWVANPFETSKQRREKEVHSLLDKLPP 432

Query: 287 ETIMLNPSKIGTVREAKKKEKPTKQEREDEMEAAVEAVKGFVWKNKTKGRNKPSKKAKKK 346
           ETIML+PSKIG +R ++++EKP++ E E E E A+EA K    KNKTKGRNKPSK+ KKK
Sbjct: 433 ETIMLDPSKIGAMRPSRRREKPSRGEIEAEKEVAIEAAKSTELKNKTKGRNKPSKRTKKK 492

Query: 347 QELVAKAKRPFLDQQLKEEQSLSKKKQKLSEE 378
           +E+V  AKR F +Q    E + + KK+++ E+
Sbjct: 493 KEMVENAKRTFPEQ----EHNTALKKRRIGED 520

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30681364|ref|NP_187664.2| transducin/WD40 domain-containing protein [Arabidopsis thaliana] gi|8567783|gb|AAF76355.1| hypothetical protein [Arabidopsis thaliana] gi|28393802|gb|AAO42310.1| unknown protein [Arabidopsis thaliana] gi|29824319|gb|AAP04120.1| unknown protein [Arabidopsis thaliana] gi|332641401|gb|AEE74922.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana]

 Score =  482 bits (1241), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 265/452 (58%), Positives = 308/452 (68%), Gaps = 78/452 (17%)

Query: 1   WLMPSEGGYLEAEGVEKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYM 60
           WL+P+E GYLE EG+EKTWR+KQ  IA EVDILSSRNQYDI+LP+ GPY LDFT+SGR+M
Sbjct: 73  WLLPAEAGYLETEGLEKTWRVKQTDIANEVDILSSRNQYDIVLPDFGPYKLDFTASGRHM 132

Query: 61  AAAGCKG----------------------------------------YPYFYNRDGTELH 80
            A G KG                                        Y Y Y RDGTELH
Sbjct: 133 LAGGRKGHLALLDMMNMSLIKEIQVRETVRDVAFLHNDQFFAAAQKKYAYIYGRDGTELH 192

Query: 81  CSKEHGEVLKLQFL-----LASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNG 135
           C KE G V +L+FL     LAS+N  GQL YQ+VT G +V +  TG GRTDV+ VNP+N 
Sbjct: 193 CLKERGPVARLRFLKNHFLLASVNMSGQLHYQDVTHGGMVASIRTGKGRTDVMEVNPYNS 252

Query: 136 VVSLGHSGGT--------------MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRK 181
           VV LGHSGGT              M CH GPVS++AFHPNGHLMATSGK+ KIKIWDLRK
Sbjct: 253 VVGLGHSGGTVTMWKPTSQAPLVQMQCHPGPVSSVAFHPNGHLMATSGKERKIKIWDLRK 312

Query: 182 YEVLQTLPG-HAKTLDFSRKDS------------GDFSG--SHNYNRYMGYSMVKGYQIG 226
           +E +QT+   HAKTL FS+K              GD SG  SHNY RYM +SMVKGYQI 
Sbjct: 313 FEEVQTIHSFHAKTLSFSQKGLLAAGTGSFVQILGDSSGGSSHNYTRYMNHSMVKGYQIE 372

Query: 227 KVSFRPYEDVLGIGHSMGVSGILIPGSGEPNFDSWVANPFETSKQRREKEVHSLLDKLPP 286
           KV FRPYEDV+GIGHSMG S ILIPGSGEPNFDSWVANPFETSKQRREKEVHSLLDKLPP
Sbjct: 373 KVMFRPYEDVIGIGHSMGWSSILIPGSGEPNFDSWVANPFETSKQRREKEVHSLLDKLPP 432

Query: 287 ETIMLNPSKIGTVREAKKKEKPTKQEREDEMEAAVEAVKGFVWKNKTKGRNKPSKKAKKK 346
           ETIML+PSKIG +R +++KEKP++ E E E E A+EA K    KNKTKGRNKPSK+ KKK
Sbjct: 433 ETIMLDPSKIGAMRPSRRKEKPSRGEIEAEKEVAIEAAKSTELKNKTKGRNKPSKRTKKK 492

Query: 347 QELVAKAKRPFLDQQLKEEQSLSKKKQKLSEE 378
           +E+V  AKR F +Q    E + + KK+++ E+
Sbjct: 493 KEMVENAKRTFPEQ----EHNTAIKKRRIVED 520

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|12322776|gb|AAG51373.1|AC011560_5 hypothetical protein; 61080-58687 [Arabidopsis thaliana]

 Score =  482 bits (1240), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 265/452 (58%), Positives = 308/452 (68%), Gaps = 78/452 (17%)

Query: 1   WLMPSEGGYLEAEGVEKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYM 60
           WL+P+E GYLE EG+EKTWR+KQ  IA EVDILSSRNQYDI+LP+ GPY LDFT+SGR+M
Sbjct: 85  WLLPAEAGYLETEGLEKTWRVKQTDIANEVDILSSRNQYDIVLPDFGPYKLDFTASGRHM 144

Query: 61  AAAGCKG----------------------------------------YPYFYNRDGTELH 80
            A G KG                                        Y Y Y RDGTELH
Sbjct: 145 LAGGRKGHLALLDMMNMSLIKEIQVRETVRDVAFLHNDQFFAAAQKKYAYIYGRDGTELH 204

Query: 81  CSKEHGEVLKLQFL-----LASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNG 135
           C KE G V +L+FL     LAS+N  GQL YQ+VT G +V +  TG GRTDV+ VNP+N 
Sbjct: 205 CLKERGPVARLRFLKNHFLLASVNMSGQLHYQDVTHGGMVASIRTGKGRTDVMEVNPYNS 264

Query: 136 VVSLGHSGGT--------------MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRK 181
           VV LGHSGGT              M CH GPVS++AFHPNGHLMATSGK+ KIKIWDLRK
Sbjct: 265 VVGLGHSGGTVTMWKPTSQAPLVQMQCHPGPVSSVAFHPNGHLMATSGKERKIKIWDLRK 324

Query: 182 YEVLQTLPG-HAKTLDFSRKDS------------GDFSG--SHNYNRYMGYSMVKGYQIG 226
           +E +QT+   HAKTL FS+K              GD SG  SHNY RYM +SMVKGYQI 
Sbjct: 325 FEEVQTIHSFHAKTLSFSQKGLLAAGTGSFVQILGDSSGGSSHNYTRYMNHSMVKGYQIE 384

Query: 227 KVSFRPYEDVLGIGHSMGVSGILIPGSGEPNFDSWVANPFETSKQRREKEVHSLLDKLPP 286
           KV FRPYEDV+GIGHSMG S ILIPGSGEPNFDSWVANPFETSKQRREKEVHSLLDKLPP
Sbjct: 385 KVMFRPYEDVIGIGHSMGWSSILIPGSGEPNFDSWVANPFETSKQRREKEVHSLLDKLPP 444

Query: 287 ETIMLNPSKIGTVREAKKKEKPTKQEREDEMEAAVEAVKGFVWKNKTKGRNKPSKKAKKK 346
           ETIML+PSKIG +R +++KEKP++ E E E E A+EA K    KNKTKGRNKPSK+ KKK
Sbjct: 445 ETIMLDPSKIGAMRPSRRKEKPSRGEIEAEKEVAIEAAKSTELKNKTKGRNKPSKRTKKK 504

Query: 347 QELVAKAKRPFLDQQLKEEQSLSKKKQKLSEE 378
           +E+V  AKR F +Q    E + + KK+++ E+
Sbjct: 505 KEMVENAKRTFPEQ----EHNTAIKKRRIVED 532

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	378
TAIR|locus:2075750	536	AT3G10530 "AT3G10530" [Arabido	0.515	0.363	0.714	1.2e-100
CGD|CAL0005357	527	orf19.4835 [Candida albicans (	0.457	0.328	0.387	7.6e-42
UNIPROTKB|Q5APD0	527	CaO19.12298 "Putative uncharac	0.457	0.328	0.387	7.6e-42
SGD|S000000884	554	UTP7 "Nucleolar protein" [Sacc	0.309	0.211	0.385	6.4e-40
FB|FBgn0030000	609	CG2260 [Drosophila melanogaste	0.275	0.170	0.476	6.7e-40
POMBASE|SPAC959.03c	520	SPAC959.03c "U3 snoRNP-associa	0.481	0.35	0.392	3.4e-38
UNIPROTKB|G4NCA1	556	MGG_01100 "Small nucleolar rib	0.296	0.201	0.435	5.6e-37
UNIPROTKB|O15213	610	WDR46 "WD repeat-containing pr	0.502	0.311	0.375	7.9e-36
MGI|MGI:1931871	622	Wdr46 "WD repeat domain 46" [M	0.497	0.302	0.380	1.4e-35
DICTYBASE|DDB_G0280489	622	wdr46 "BING4 C-terminal domain	0.494	0.300	0.347	1.9e-34

TAIR|locus:2075750 AT3G10530 "AT3G10530" [Arabidopsis thaliana (taxid:3702)]

 Score = 745 (267.3 bits), Expect = 1.2e-100, Sum P(2) = 1.2e-100
 Identities = 150/210 (71%), Positives = 167/210 (79%)

Query:   146 MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPG-HAKTLDFSRKDS-- 202
             M CH GPVS++AFHPNGHLMATSGK+ KIKIWDLRK+E +QT+   HAKTL FS+K    
Sbjct:   277 MQCHPGPVSSVAFHPNGHLMATSGKERKIKIWDLRKFEEVQTIHSFHAKTLSFSQKGLLA 336

Query:   203 ----------GDFSG--SHNYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILI 250
                       GD SG  SHNY RYM +SMVKGYQI KV FRPYEDV+GIGHSMG S ILI
Sbjct:   337 AGTGSFVQILGDSSGGSSHNYTRYMNHSMVKGYQIEKVMFRPYEDVIGIGHSMGWSSILI 396

Query:   251 PGSGEPNFDSWVANPFETSKQRREKEVHSLLDKLPPETIMLNPSKIGTVREAKKKEKPTK 310
             PGSGEPNFDSWVANPFETSKQRREKEVHSLLDKLPPETIML+PSKIG +R +++KEKP++
Sbjct:   397 PGSGEPNFDSWVANPFETSKQRREKEVHSLLDKLPPETIMLDPSKIGAMRPSRRKEKPSR 456

Query:   311 QEREDEMEAAVEAVKGFVWKNKTKGRNKPS 340
              E E E E A+EA K    KNKTKGRNKPS
Sbjct:   457 GEIEAEKEVAIEAAKSTELKNKTKGRNKPS 486

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA

CGD|CAL0005357 orf19.4835 [Candida albicans (taxid:5476)]

 Score = 314 (115.6 bits), Expect = 7.6e-42, Sum P(2) = 7.6e-42
 Identities = 79/204 (38%), Positives = 115/204 (56%)

Query:   150 QGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGH--AKTLDFSRKDSGDFS- 206
             +GP+  LA    G  MA +  D  +KIWD+RK++ +        A +LD S  D+G  S 
Sbjct:   268 RGPIRDLAIDREGKYMAVAAADKTLKIWDIRKFKEVDNYYSQTPASSLDIS--DTGLLSV 325

Query:   207 --------------GSHNYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILIPG 252
                           G H    YM + ++ G +I K  F P+ED+LG+GH  G + I++PG
Sbjct:   326 GWGPHVTIWKDILKGKHQSEPYMNH-LIPGSKIEKAKFVPFEDILGVGHEEGFNSIIVPG 384

Query:   253 SGEPNFDSWVANPFETSKQRREKEVHSLLDKLPPETIMLNPSKIGTV--REAKKKEKPTK 310
             SGE N+D+   NP+E+ KQR+++EV SLLDKLP +TI L+P+ IGTV  R +  + KP +
Sbjct:   385 SGEANYDALELNPYESVKQRQQQEVRSLLDKLPADTIALDPNVIGTVDKRASTVRLKPGE 444

Query:   311 --------QEREDEMEAAVEAVKG 326
                     Q+ +D+ME   E VKG
Sbjct:   445 ITELADKTQQSKDKMEIKAE-VKG 467

GO:0003674 "molecular_function" evidence=ND

GO:0030686 "90S preribosome" evidence=IEA

GO:0032040 "small-subunit processome" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0000472 "endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA

GO:0000447 "endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA

GO:0000480 "endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA

UNIPROTKB|Q5APD0 CaO19.12298 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)]

 Score = 314 (115.6 bits), Expect = 7.6e-42, Sum P(2) = 7.6e-42
 Identities = 79/204 (38%), Positives = 115/204 (56%)

Query:   150 QGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGH--AKTLDFSRKDSGDFS- 206
             +GP+  LA    G  MA +  D  +KIWD+RK++ +        A +LD S  D+G  S 
Sbjct:   268 RGPIRDLAIDREGKYMAVAAADKTLKIWDIRKFKEVDNYYSQTPASSLDIS--DTGLLSV 325

Query:   207 --------------GSHNYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILIPG 252
                           G H    YM + ++ G +I K  F P+ED+LG+GH  G + I++PG
Sbjct:   326 GWGPHVTIWKDILKGKHQSEPYMNH-LIPGSKIEKAKFVPFEDILGVGHEEGFNSIIVPG 384

Query:   253 SGEPNFDSWVANPFETSKQRREKEVHSLLDKLPPETIMLNPSKIGTV--REAKKKEKPTK 310
             SGE N+D+   NP+E+ KQR+++EV SLLDKLP +TI L+P+ IGTV  R +  + KP +
Sbjct:   385 SGEANYDALELNPYESVKQRQQQEVRSLLDKLPADTIALDPNVIGTVDKRASTVRLKPGE 444

Query:   311 --------QEREDEMEAAVEAVKG 326
                     Q+ +D+ME   E VKG
Sbjct:   445 ITELADKTQQSKDKMEIKAE-VKG 467

GO:0003674 "molecular_function" evidence=ND

SGD|S000000884 UTP7 "Nucleolar protein" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 248 (92.4 bits), Expect = 6.4e-40, Sum P(2) = 6.4e-40
 Identities = 47/122 (38%), Positives = 78/122 (63%)

Query:   203 GDFSGS-HNYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILIPGSGEPNFDSW 261
             G   G+ H    YM + +  G ++  + F P+ED+LG+GH  G++ +++PG+GE N+D+ 
Sbjct:   356 GSMGGNPHRNTPYMSH-LFAGNKVENLGFVPFEDLLGVGHQTGITNLIVPGAGEANYDAL 414

Query:   262 VANPFETSKQRREKEVHSLLDKLPPETIMLNPSKIGTVREAKKKEKPTKQEREDEMEAAV 321
               NPFET KQR+E+EV +LL+KLP +TI L+P+ IG+V    K+    +   +D  +  +
Sbjct:   415 ELNPFETKKQRQEQEVRTLLNKLPADTITLDPNSIGSV---DKRSSTIRLNAKDLAQTTM 471

Query:   322 EA 323
             +A
Sbjct:   472 DA 473

GO:0030686 "90S preribosome" evidence=IDA

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0005730 "nucleolus" evidence=IEA;IDA

GO:0000480 "endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP

GO:0000472 "endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP

GO:0000447 "endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP

GO:0032040 "small-subunit processome" evidence=IDA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

GO:0000462 "maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP

FB|FBgn0030000 CG2260 [Drosophila melanogaster (taxid:7227)]

 Score = 243 (90.6 bits), Expect = 6.7e-40, Sum P(2) = 6.7e-40
 Identities = 51/107 (47%), Positives = 70/107 (65%)

Query:   230 FRPYEDVLGIGHSMGVSGILIPGSGEPNFDSWVANPFETSKQRREKEVHSLLDKLPPETI 289
             F PYEDVLG+  + G   +L+PGSGEPNFD+   NP+ETSKQRRE EVH+LL+K+PPE I
Sbjct:   437 FCPYEDVLGVSTAKGFQSLLVPGSGEPNFDAMEDNPYETSKQRREHEVHALLEKIPPELI 496

Query:   290 MLNPSKIGTVREAKKKEKPTKQEREDEMEAAVEAVKGFVWKNKTKGR 336
              L+P +I  V     +EK   + +   ++A    +K    ++K KGR
Sbjct:   497 TLDPQEITGVDAPTLQEKIDAKRKLFHLKAPRINMKS---RHKMKGR 540

GO:0022008 "neurogenesis" evidence=IMP

POMBASE|SPAC959.03c SPAC959.03c "U3 snoRNP-associated protein Utp7 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 311 (114.5 bits), Expect = 3.4e-38, Sum P(2) = 3.4e-38
 Identities = 82/209 (39%), Positives = 116/209 (55%)

Query:   146 MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL--PGHAKTLDFSRKDSG 203
             ML H+GPV  LA + +G  M T+G D  +K+WDLR Y+ L +   P  A+ L  S  D G
Sbjct:   261 MLTHRGPVRDLAVNRDGRYMVTAGADSLLKVWDLRTYKELHSYYTPTPAQRLTLS--DRG 318

Query:   204 DFS---GSH------------NYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGI 248
               +   G H            N+  YM + ++    +  + + PYED+LGIGH+ G   I
Sbjct:   319 LLAVGWGPHATIWKDALRTKQNFP-YMNH-LLPSSSVVDLHYCPYEDILGIGHAKGFESI 376

Query:   249 LIPGSGEPNFDSWVANPFETSKQRREKEVHSLLDKLPPETIMLNPSKIGTVREAKKKEKP 308
             ++PGSGEPN+DS+  +PF + KQR+E EV  LL+KL PE I LN   IG V  A     P
Sbjct:   377 IVPGSGEPNYDSYENDPFASRKQRQETEVRQLLEKLRPEMISLNADFIGNVDRAA----P 432

Query:   309 TKQEREDEMEAAVEAVKGFVWKNKTKGRN 337
             + ++ E E E   E  + +V K K +G+N
Sbjct:   433 SLRKAEAEEEKPPE--EKWVPKAKARGKN 459

GO:0005730 "nucleolus" evidence=IDA

GO:0005732 "small nucleolar ribonucleoprotein complex" evidence=ISO

GO:0030490 "maturation of SSU-rRNA" evidence=ISO

GO:0030515 "snoRNA binding" evidence=ISO

GO:0032040 "small-subunit processome" evidence=ISO

UNIPROTKB|G4NCA1 MGG_01100 "Small nucleolar ribonucleoprotein complex subunit" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 242 (90.2 bits), Expect = 5.6e-37, Sum P(2) = 5.6e-37
 Identities = 51/117 (43%), Positives = 78/117 (66%)

Query:   221 KGYQIGKVSFRPYEDVLGIGHSMGVSGILIPGSGEPNFDSWVANPFETSKQRREKEVHSL 280
             +G ++ +V + P+EDVLGIGH  G S IL+PG+GE NFD+   NP+ET KQR+E EV SL
Sbjct:   389 EGRRVERVRWCPFEDVLGIGHDGGFSSILVPGAGEANFDALEINPYETVKQRQESEVKSL 448

Query:   281 LDKLPPETIMLNPSKIGTVREAKKKEKPTKQEREDEMEAAVEAVKGFVWKNKTKGRN 337
             L+KL PE I L+P+ +G +    + E   + ER+  ++A  E +   + +N+ +G+N
Sbjct:   449 LNKLQPEMIALDPNFVGNLD--LRSEAQRRAERD--LDAPPEDIADEI-RNRMRGKN 500

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|O15213 WDR46 "WD repeat-containing protein 46" [Homo sapiens (taxid:9606)]

 Score = 289 (106.8 bits), Expect = 7.9e-36, Sum P(2) = 7.9e-36
 Identities = 78/208 (37%), Positives = 118/208 (56%)

Query:   146 MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLR-KYEVL--QTLPGHAKTLDFSRKDS 202
             +LCH+G V A+A    G  MATSG D ++KI+DLR  Y+ L  +TLP  A  L FS++  
Sbjct:   355 ILCHRGGVRAVAVDSTGTYMATSGLDHQLKIFDLRGTYQPLSTRTLPHGAGHLAFSQRGL 414

Query:   203 GDFSGSHNYNRYMGY------SMVKGYQIGKVS-------FRPYEDVLGIGHSMGVSGIL 249
                      N + G       S+ + Y   ++S       F P+EDVLG+GH+ G++ +L
Sbjct:   415 LVAGMGDVVNIWAGQGKASPPSLEQPYLTHRLSGPVHGLQFCPFEDVLGVGHTGGITSML 474

Query:   250 IPGSGEPNFDSWVANPFETSKQRREKEVHSLLDKLPPETIMLNPSKIGTVREAKKKEKPT 309
             +PG+GEPNFD   +NP+ + KQR+E EV +LL+K+P E I L+P  +  V     ++   
Sbjct:   475 VPGAGEPNFDGLESNPYRSRKQRQEWEVKALLEKVPAELICLDPRALAEVDVISLEQG-- 532

Query:   310 KQEREDEMEAAVEAVKGFVWKNKTKGRN 337
             K+E+ + +    +A   F  K K KGR+
Sbjct:   533 KKEQIERLGYDPQAKAPFQPKPKQKGRS 560

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

MGI|MGI:1931871 Wdr46 "WD repeat domain 46" [Mus musculus (taxid:10090)]

 Score = 292 (107.8 bits), Expect = 1.4e-35, Sum P(2) = 1.4e-35
 Identities = 80/210 (38%), Positives = 120/210 (57%)

Query:   146 MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLR-KYEVL--QTLPGHAKTLDFSRKD- 201
             +LCH+G V A+A    G  MATSG D ++KI+DLR  ++ L  +TLP  A  L FS++  
Sbjct:   354 ILCHRGGVRAVAVDSTGTYMATSGLDHQLKIFDLRGTFQPLSSRTLPQGAGHLAFSQRGL 413

Query:   202 ----SGD----FSGSHNYNR------YMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSG 247
                  GD    ++G    +       Y+ + +  G+  G + F P+EDVLG+GHS G + 
Sbjct:   414 LVAGMGDVVNIWAGQGKASPPSLEQPYLTHRL-SGHVHG-LQFCPFEDVLGVGHSGGFTS 471

Query:   248 ILIPGSGEPNFDSWVANPFETSKQRREKEVHSLLDKLPPETIMLNPSKIGTVREAKKKEK 307
             +L+PG+ EPNFD    NP+ + KQR+E EV +LL+K+P E I LNP  +  V     +++
Sbjct:   472 MLVPGAAEPNFDGLENNPYRSRKQRQEWEVKALLEKVPAELICLNPRALAEVDVVTLEQQ 531

Query:   308 PTKQEREDEMEAAVEAVKGFVWKNKTKGRN 337
               K+ER + +    +A   F  K K KGR+
Sbjct:   532 --KKERIERLGYDPDAKAAFQPKAKQKGRS 559

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

DICTYBASE|DDB_G0280489 wdr46 "BING4 C-terminal domain-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 272 (100.8 bits), Expect = 1.9e-34, Sum P(2) = 1.9e-34
 Identities = 72/207 (34%), Positives = 117/207 (56%)

Query:   148 CHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRK-YEVLQTLPGH--AKTLDFSRKD--- 201
             CH+ P++++A   +G+ + TSG D  IKI+DLR  YE +          ++  S  +   
Sbjct:   394 CHKSPITSMAVSLSGNHLVTSGLDGMIKIFDLRNTYEEMHAFRTKFTPNSISLSHTNVLA 453

Query:   202 -SGDFSGSHNYNRYMGYSMVKGYQIGK-------VSFRPYEDVLGIGHSMGVSGILIPGS 253
              +GD   ++ +      S+ + Y I K       V F P+EDVLGIG   G S IL+PGS
Sbjct:   454 VAGD-KETYLWKNPFDTSVKEPYLIHKNASMARNVQFCPFEDVLGIGTDNGFSSILVPGS 512

Query:   254 GEPNFDSWVANPFETSKQRREKEVHSLLDKLPPETIMLNPSKIGTVREAKKKEKPTKQER 313
             G  N+DS  A+PF + K +RE+++ SLL+K+P + I L+P+ IGT+++  K ++  K +R
Sbjct:   513 GIANYDSMEADPFASKKMKREQDIKSLLEKIPHDMISLDPNIIGTIQQGVKTDE-NKHKR 571

Query:   314 EDEMEAAVEAVKGFVWKN--KTKGRNK 338
             +D+     +  + F  K   +TK +NK
Sbjct:   572 QDKQRQ--DKNRQFDPKKLEETKQKNK 596

GO:0030515 "snoRNA binding" evidence=ISS

GO:0030490 "maturation of SSU-rRNA" evidence=ISS

GO:0005732 "small nucleolar ribonucleoprotein complex" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00018070001	SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (540 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00019376001	SubName- Full=Chromosome chr7 scaffold_20, whole genome shotgun sequence; (1041 aa)				•	•		•		0.935
	GSVIVG00018638001	SubName- Full=Chromosome chr12 scaffold_18, whole genome shotgun sequence; (452 aa)				•	•		•		0.922
	GSVIVG00038815001	SubName- Full=Chromosome chr5 scaffold_98, whole genome shotgun sequence; (1139 aa)				•	•		•		0.917
	GSVIVG00000661001	SubName- Full=Chromosome chr8 scaffold_106, whole genome shotgun sequence; (701 aa)				•	•		•		0.902
	GSVIVG00034559001	SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (840 aa)				•	•		•	•	0.898
	GSVIVG00038090001	SubName- Full=Chromosome chr14 scaffold_9, whole genome shotgun sequence; (182 aa)				•	•		•		0.897
	GSVIVG00013990001	SubName- Full=Chromosome chr16 scaffold_10, whole genome shotgun sequence; (900 aa)				•	•		•		0.878
	GSVIVG00000597001	SubName- Full=Chromosome chr8 scaffold_106, whole genome shotgun sequence; (926 aa)				•	•		•	•	0.875
	GSVIVG00037695001	SubName- Full=Chromosome undetermined scaffold_91, whole genome shotgun sequence; (245 aa)				•	•		•		0.869
	GSVIVG00007719001	SubName- Full=Chromosome chr3 scaffold_199, whole genome shotgun sequence; (387 aa)				•	•		•		0.857

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	378
pfam08149	80	pfam08149, BING4CT, BING4CT (NUC141) domain	2e-43
smart01033	80	smart01033, BING4CT, BING4CT (NUC141) domain	6e-42
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-13
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	7e-13
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-12
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	7e-11
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	1e-09
smart00320	40	smart00320, WD40, WD40 repeats	2e-09
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	8e-09
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-07
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-05
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	7e-04
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	0.001
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	0.002

>gnl|CDD|149288 pfam08149, BING4CT, BING4CT (NUC141) domain

 Score =  145 bits (367), Expect = 2e-43
 Identities = 54/80 (67%), Positives = 62/80 (77%), Gaps = 1/80 (1%)

Query: 214 YMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILIPGSGEPNFDSWVANPFETSKQRR 273
           YM +    G +I  V F P+EDVLGIGHS G S I++PGSGEPNFDS  ANPFET KQRR
Sbjct: 2   YMTH-NKPGSKISSVRFCPFEDVLGIGHSGGFSSIIVPGSGEPNFDSLEANPFETKKQRR 60

Query: 274 EKEVHSLLDKLPPETIMLNP 293
           E+EV SLL+KLPPETI L+P
Sbjct: 61  EREVRSLLEKLPPETISLDP 80

This C terminal domain is found in the BING4 family of nucleolar WD40 repeat proteins. Length = 80

>gnl|CDD|198101 smart01033, BING4CT, BING4CT (NUC141) domain

 Score =  141 bits (357), Expect = 6e-42
 Identities = 50/80 (62%), Positives = 62/80 (77%), Gaps = 1/80 (1%)

Query: 214 YMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILIPGSGEPNFDSWVANPFETSKQRR 273
           YM + +  G ++  V F P+EDVLGIGH+ G S I++PG+GEPNFDS  ANPFET KQRR
Sbjct: 2   YMTHGL-PGSRVESVRFCPFEDVLGIGHAGGFSSIIVPGAGEPNFDSLEANPFETRKQRR 60

Query: 274 EKEVHSLLDKLPPETIMLNP 293
           E+EV SLL+KLPPE I L+P
Sbjct: 61  EREVRSLLEKLPPELISLDP 80

This C terminal domain is found in the BING4 family of nucleolar WD40 repeat proteins. Length = 80

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 70.1 bits (172), Expect = 2e-13
 Identities = 28/74 (37%), Positives = 44/74 (59%), Gaps = 3/74 (4%)

Query: 140 GHSGGTMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHAK---TLD 196
           G   GT+  H+  V+++AF P+G+L+A+  +D  I++WDLR  E +QTL GH     +L 
Sbjct: 209 GKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLA 268

Query: 197 FSRKDSGDFSGSHN 210
           +S       SGS +
Sbjct: 269 WSPDGKRLASGSAD 282

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 68.1 bits (167), Expect = 7e-13
 Identities = 43/193 (22%), Positives = 76/193 (39%), Gaps = 40/193 (20%)

Query: 50  TLDFTSSGRYMAAAG----CKGYPYFYNRDGTELHCSKEH-GEVLKLQF-----LLASIN 99
            +  ++ G Y+A+       + +       G  +     H   V  + F     +L+S +
Sbjct: 56  DVAASADGTYLASGSSDKTIRLWDL---ETGECVRTLTGHTSYVSSVAFSPDGRILSSSS 112

Query: 100 KLGQLRYQNVTMGEIVGNFWTGLGRTD---VIRVNPFNGVVSLGHSGGTML--------C 148
           +   ++  +V  G+ +       G TD    +  +P    V+     GT+         C
Sbjct: 113 RDKTIKVWDVETGKCLTTL---RGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKC 169

Query: 149 ------HQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHAK---TLDFSR 199
                 H G V+++AF P+G  + +S  D  IK+WDL   + L TL GH     ++ FS 
Sbjct: 170 VATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSP 229

Query: 200 KD----SGDFSGS 208
                 SG   G+
Sbjct: 230 DGYLLASGSEDGT 242

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 67.4 bits (165), Expect = 1e-12
 Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 7/79 (8%)

Query: 137 VSLGHSGGTMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGH---AK 193
           +  G    T+  H   VS++AF P+G ++++S +D  IK+WD+   + L TL GH     
Sbjct: 80  LETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVN 139

Query: 194 TLDFSRKDSGDF--SGSHN 210
           ++ FS    G F  S S +
Sbjct: 140 SVAFSP--DGTFVASSSQD 156

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 62.0 bits (151), Expect = 7e-11
 Identities = 23/52 (44%), Positives = 32/52 (61%)

Query: 144 GTMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHAKTL 195
            T+  H G V+ +AF P+G L+AT   D  IK+WDL   E+L+TL GH   +
Sbjct: 3   RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPV 54

Length = 289

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 52.7 bits (127), Expect = 1e-09
 Identities = 13/30 (43%), Positives = 23/30 (76%)

Query: 149 HQGPVSALAFHPNGHLMATSGKDCKIKIWD 178
           H GPV+++AF P+G+L+A+   D  +++WD
Sbjct: 10  HTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 51.9 bits (125), Expect = 2e-09
 Identities = 15/34 (44%), Positives = 23/34 (67%)

Query: 145 TMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWD 178
           T+  H GPV+++AF P+G  +A+   D  IK+WD
Sbjct: 7   TLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 55.8 bits (135), Expect = 8e-09
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 3/57 (5%)

Query: 149 HQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHAK---TLDFSRKDS 202
           H GPV  +A   +G  +A+   D  I++WDL   E ++TL GH     ++ FS    
Sbjct: 50  HTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGR 106

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 53.2 bits (126), Expect = 1e-07
 Identities = 56/253 (22%), Positives = 100/253 (39%), Gaps = 38/253 (15%)

Query: 34  SSRNQYDIMLPELGPYTLDFTSSGRYMAAAGC-KGYPYFYN-RDGTELHCSKEH-GEVLK 90
             +    +        +L F+  G+ +A+     G    ++ R G  L     H   V  
Sbjct: 144 PGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSS 203

Query: 91  LQF------LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGG 144
           L F      L+AS +  G +R  +++ G+++ +  +G   + V   +P   +++ G S G
Sbjct: 204 LAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDG 263

Query: 145 TMLC---------------HQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQ--T 187
           T+                 H   V ++AF P+G L+A+   D  +++WDL   ++L   T
Sbjct: 264 TIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLT 323

Query: 188 LPGHA---KTLDFSRKDSGDFSGSHNYNRYMGYSMVKGYQ---------IGKVSFRPYED 235
           L GH     +L FS   S   SG  +      + +  G           +  VSF P   
Sbjct: 324 LKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGR 383

Query: 236 VLGIGHSMGVSGI 248
           V+  G + G   +
Sbjct: 384 VVSSGSTDGTVRL 396

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 12/30 (40%), Positives = 19/30 (63%)

Query: 149 HQGPVSALAFHPNGHLMATSGKDCKIKIWD 178
           H   V++LA+ P+G  +A+   D  I+IWD
Sbjct: 260 HTNSVTSLAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 41.2 bits (95), Expect = 7e-04
 Identities = 39/184 (21%), Positives = 72/184 (39%), Gaps = 27/184 (14%)

Query: 52  DFTSSGRYMAAAGCKGYPYFYN--RDGTELHCSKEHGE-VLKLQF-----LLASINKLGQ 103
            F+  G  +A+    G    ++     + L     H   VL + F     LLAS +  G 
Sbjct: 248 SFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGT 307

Query: 104 LRYQNVTMGEIVG--NFWTGLGRTDVIRVNPFNGVVSLGHSGGTMLC------------- 148
           +R  ++  G+++         G    +  +P   ++  G S    +              
Sbjct: 308 VRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTL 367

Query: 149 -HQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHAK---TLDFSRKDSGD 204
                V +++F P+G ++++   D  +++WDL    +L+ L GH     +LDFS      
Sbjct: 368 EGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSL 427

Query: 205 FSGS 208
            SGS
Sbjct: 428 ASGS 431

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 40.1 bits (92), Expect = 0.001
 Identities = 46/231 (19%), Positives = 85/231 (36%), Gaps = 43/231 (18%)

Query: 5   SEGGYLEAEGVEKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYT-LDFTSSGRYMAAA 63
            +G  L +   + T R+         D+ SS +    +         + F+  G+ +A+ 
Sbjct: 251 PDGSLLASGSSDGTIRL--------WDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASG 302

Query: 64  GCKGYPYFYNRDGTELHCSKEH----GEVLKLQF------LLASINKLGQLRYQNVTMGE 113
              G    ++ +  +L  S       G V  L F      L++  +  G +R  ++  G+
Sbjct: 303 SSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK 362

Query: 114 IVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT--------------MLCHQGPVSALAFH 159
            +     G      +  +P   VVS G + GT              +  H   V++L F 
Sbjct: 363 PL-KTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFS 421

Query: 160 PNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHAKTLDFSRKDSGDFSGSHN 210
           P+G  +A+   D  I++WDL+            K++ FS       S S +
Sbjct: 422 PDGKSLASGSSDNTIRLWDLKTSL---------KSVSFSPDGKVLASKSSD 463

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 39.7 bits (91), Expect = 0.002
 Identities = 13/40 (32%), Positives = 23/40 (57%)

Query: 142 SGGTMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRK 181
           S   +  H+  ++++AF P+G L+ +   D  IK+WDL  
Sbjct: 57  SSLLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDN 96

Length = 466

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	378
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	99.97
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.97
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.97
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.97
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.97
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.97
KOG0315	311	consensus G-protein beta subunit-like protein (con	99.97
KOG0286	343	consensus G-protein beta subunit [General function	99.97
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.96
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.96
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.96
KOG0263	707	consensus Transcription initiation factor TFIID, s	99.96
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.96
KOG0315	311	consensus G-protein beta subunit-like protein (con	99.96
KOG0266	456	consensus WD40 repeat-containing protein [General	99.96
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.96
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.96
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.96
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.96
KOG0643	327	consensus Translation initiation factor 3, subunit	99.95
KOG0645	312	consensus WD40 repeat protein [General function pr	99.95
KOG0645	312	consensus WD40 repeat protein [General function pr	99.95
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.95
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.95
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.95
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.95
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.95
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.95
KOG2096	420	consensus WD40 repeat protein [General function pr	99.95
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.95
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.95
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.95
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.95
PLN00181	793	protein SPA1-RELATED; Provisional	99.95
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.95
KOG0296	399	consensus Angio-associated migratory cell protein	99.95
KOG0266	456	consensus WD40 repeat-containing protein [General	99.95
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.95
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.94
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.94
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.94
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.94
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.94
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.94
KOG0296	399	consensus Angio-associated migratory cell protein	99.94
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.94
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.94
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.94
KOG0646	476	consensus WD40 repeat protein [General function pr	99.94
PLN00181	793	protein SPA1-RELATED; Provisional	99.93
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.93
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.93
PTZ00420	568	coronin; Provisional	99.93
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.93
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.93
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.93
PTZ00421	493	coronin; Provisional	99.93
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.93
KOG0289	506	consensus mRNA splicing factor [General function p	99.92
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.92
KOG0643	327	consensus Translation initiation factor 3, subunit	99.92
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.92
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.92
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.92
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.92
KOG1274	933	consensus WD40 repeat protein [General function pr	99.91
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.91
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.91
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.9
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.9
KOG0641	350	consensus WD40 repeat protein [General function pr	99.9
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.9
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.9
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.9
KOG1539	910	consensus WD repeat protein [General function pred	99.89
KOG0289	506	consensus mRNA splicing factor [General function p	99.89
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.89
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.89
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.89
PTZ00421	493	coronin; Provisional	99.89
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.88
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.88
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.88
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.88
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.88
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.87
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.87
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.86
PTZ00420	568	coronin; Provisional	99.86
KOG0646	476	consensus WD40 repeat protein [General function pr	99.86
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.86
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.86
KOG2055	514	consensus WD40 repeat protein [General function pr	99.86
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.85
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.85
KOG0267	825	consensus Microtubule severing protein katanin p80	99.85
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.85
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.85
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.85
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.85
KOG2048	691	consensus WD40 repeat protein [General function pr	99.85
KOG0267	825	consensus Microtubule severing protein katanin p80	99.84
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.84
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.84
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.84
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.84
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.83
KOG0641	350	consensus WD40 repeat protein [General function pr	99.83
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.83
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.83
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.82
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.82
KOG0639	705	consensus Transducin-like enhancer of split protei	99.82
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.82
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.82
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.81
KOG1273	405	consensus WD40 repeat protein [General function pr	99.81
KOG0639	705	consensus Transducin-like enhancer of split protei	99.81
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.81
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.81
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.81
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.8
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.8
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.8
KOG1539	910	consensus WD repeat protein [General function pred	99.8
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.8
KOG2055	514	consensus WD40 repeat protein [General function pr	99.8
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.79
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.79
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.79
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.78
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.78
KOG1274	933	consensus WD40 repeat protein [General function pr	99.77
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.77
KOG4328	498	consensus WD40 protein [Function unknown]	99.77
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.76
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.75
KOG1273	405	consensus WD40 repeat protein [General function pr	99.75
KOG4328	498	consensus WD40 protein [Function unknown]	99.75
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.75
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.75
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.73
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.73
KOG1188	376	consensus WD40 repeat protein [General function pr	99.73
KOG2096	420	consensus WD40 repeat protein [General function pr	99.72
KOG2048	691	consensus WD40 repeat protein [General function pr	99.72
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.71
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.71
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.69
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.69
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.69
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.69
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.68
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.68
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.67
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.66
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.66
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.65
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.65
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.64
KOG1188	376	consensus WD40 repeat protein [General function pr	99.64
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.63
KOG1310	758	consensus WD40 repeat protein [General function pr	99.63
KOG0649	325	consensus WD40 repeat protein [General function pr	99.63
KOG2314	698	consensus Translation initiation factor 3, subunit	99.63
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.63
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.62
PF08149	80	BING4CT: BING4CT (NUC141) domain; InterPro: IPR012	99.62
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.61
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.61
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.61
KOG4227	609	consensus WD40 repeat protein [General function pr	99.61
PRK01742	429	tolB translocation protein TolB; Provisional	99.6
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.6
PRK11028	330	6-phosphogluconolactonase; Provisional	99.6
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.59
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.59
KOG1963	792	consensus WD40 repeat protein [General function pr	99.58
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.58
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.58
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.57
KOG2321	703	consensus WD40 repeat protein [General function pr	99.57
PRK04922	433	tolB translocation protein TolB; Provisional	99.56
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.56
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.54
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.54
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.54
PRK02889	427	tolB translocation protein TolB; Provisional	99.53
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.53
PRK03629	429	tolB translocation protein TolB; Provisional	99.52
COG2319	466	FOG: WD40 repeat [General function prediction only	99.52
KOG2139	445	consensus WD40 repeat protein [General function pr	99.52
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.51
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.51
PRK05137	435	tolB translocation protein TolB; Provisional	99.51
KOG1963	792	consensus WD40 repeat protein [General function pr	99.5
KOG2139	445	consensus WD40 repeat protein [General function pr	99.5
COG2319	466	FOG: WD40 repeat [General function prediction only	99.5
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.47
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.46
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.45
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.45
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.45
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.44
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.42
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.42
PRK01742	429	tolB translocation protein TolB; Provisional	99.41
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.39
KOG0649	325	consensus WD40 repeat protein [General function pr	99.36
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.36
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.35
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.34
PRK11028	330	6-phosphogluconolactonase; Provisional	99.32
PRK04792	448	tolB translocation protein TolB; Provisional	99.31
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.31
PRK05137	435	tolB translocation protein TolB; Provisional	99.31
PRK00178	430	tolB translocation protein TolB; Provisional	99.3
KOG2315	566	consensus Predicted translation initiation factor	99.29
PRK02889	427	tolB translocation protein TolB; Provisional	99.28
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.27
KOG1334	559	consensus WD40 repeat protein [General function pr	99.27
PRK03629	429	tolB translocation protein TolB; Provisional	99.27
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.26
KOG4547	541	consensus WD40 repeat-containing protein [General	99.26
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.24
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.21
PRK01029	428	tolB translocation protein TolB; Provisional	99.21
PRK04922	433	tolB translocation protein TolB; Provisional	99.19
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.16
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.16
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.16
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.15
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.12
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.11
KOG1310	758	consensus WD40 repeat protein [General function pr	99.09
KOG4227	609	consensus WD40 repeat protein [General function pr	99.09
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.08
KOG2321	703	consensus WD40 repeat protein [General function pr	99.07
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.06
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.04
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.04
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.01
KOG2315	566	consensus Predicted translation initiation factor	99.0
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.0
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.0
PRK00178	430	tolB translocation protein TolB; Provisional	98.98
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.98
PRK04792	448	tolB translocation protein TolB; Provisional	98.97
PRK01029	428	tolB translocation protein TolB; Provisional	98.96
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.95
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.93
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.9
KOG2695	425	consensus WD40 repeat protein [General function pr	98.88
PRK04043	419	tolB translocation protein TolB; Provisional	98.86
KOG4547	541	consensus WD40 repeat-containing protein [General	98.86
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.85
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.83
COG4946	668	Uncharacterized protein related to the periplasmic	98.8
PRK04043	419	tolB translocation protein TolB; Provisional	98.8
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.8
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.77
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.74
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.74
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.73
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.72
KOG1409	404	consensus Uncharacterized conserved protein, conta	98.72
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.72
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.7
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.69
KOG1409	404	consensus Uncharacterized conserved protein, conta	98.69
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.69
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.63
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.62
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.6
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	98.6
KOG1334	559	consensus WD40 repeat protein [General function pr	98.6
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.6
COG4946	668	Uncharacterized protein related to the periplasmic	98.6
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	98.59
KOG0280	339	consensus Uncharacterized conserved protein [Amino	98.58
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.57
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.54
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.5
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.5
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.5
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.47
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.44
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.44
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.42
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.38
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.37
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.36
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.34
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.32
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.32
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.3
KOG2314	698	consensus Translation initiation factor 3, subunit	98.28
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.26
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.24
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.21
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.19
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.18
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.13
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.06
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.05
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.04
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	98.04
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.03
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.03
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	98.02
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.02
KOG3621	726	consensus WD40 repeat-containing protein [General	97.99
PRK02888	635	nitrous-oxide reductase; Validated	97.96
KOG4714	319	consensus Nucleoporin [Nuclear structure]	97.95
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.95
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	97.94
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.94
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	97.86
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.85
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.83
KOG2695	425	consensus WD40 repeat protein [General function pr	97.82
KOG2395	644	consensus Protein involved in vacuole import and d	97.79
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	97.75
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.71
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.7
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.64
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.64
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.63
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.58
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.52
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	97.37
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.27
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.27
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.24
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.18
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.18
PRK02888	635	nitrous-oxide reductase; Validated	97.11
KOG2395	644	consensus Protein involved in vacuole import and d	97.1
COG3391	381	Uncharacterized conserved protein [Function unknow	97.04
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	96.95
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	96.9
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.86
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	96.85
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	96.83
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	96.79
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	96.75
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	96.73
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	96.66
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	96.66
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	96.65
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	96.64
KOG3621	726	consensus WD40 repeat-containing protein [General	96.59
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	96.56
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	96.54
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	96.52
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	96.51
PRK13616	591	lipoprotein LpqB; Provisional	96.46
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	96.44
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	96.42
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	96.41
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	96.38
KOG1008	783	consensus Uncharacterized conserved protein, conta	96.38
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	96.26
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	96.21
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.11
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	96.08
KOG2444	238	consensus WD40 repeat protein [General function pr	96.07
PRK13616	591	lipoprotein LpqB; Provisional	96.06
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	96.0
COG3391	381	Uncharacterized conserved protein [Function unknow	95.99
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	95.93
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	95.83
COG5167	776	VID27 Protein involved in vacuole import and degra	95.71
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	95.65
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	95.53
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	95.41
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	95.31
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	95.26
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	95.14
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	94.95
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	94.89
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	94.88
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	94.83
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	94.81
COG5167	776	VID27 Protein involved in vacuole import and degra	94.75
PHA02713	557	hypothetical protein; Provisional	94.54
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	94.44
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	94.38
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	94.37
KOG2444	238	consensus WD40 repeat protein [General function pr	94.25
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	94.21
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	94.15
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	93.97
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	93.96
KOG1008	783	consensus Uncharacterized conserved protein, conta	93.84
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	93.27
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	93.2
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	93.17
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	93.12
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	93.07
KOG2247	615	consensus WD40 repeat-containing protein [General	93.05
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	92.91
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	92.76
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	92.72
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	92.66
KOG2377	657	consensus Uncharacterized conserved protein [Funct	92.42
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	92.23
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	92.05
PRK13684	334	Ycf48-like protein; Provisional	91.81
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	91.62
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	91.24
PHA03098	534	kelch-like protein; Provisional	91.02
KOG2377	657	consensus Uncharacterized conserved protein [Funct	90.82
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	90.77
PF08801	422	Nucleoporin_N: Nup133 N terminal like; InterPro: I	90.66
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	90.65
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	90.07
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	89.95
PHA02790	480	Kelch-like protein; Provisional	89.61
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	89.48
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	88.94
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	88.74
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	88.64
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	88.37
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	87.85
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	87.46
COG1520	370	FOG: WD40-like repeat [Function unknown]	87.32
PF14269	299	Arylsulfotran_2: Arylsulfotransferase (ASST)	87.18
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	86.96
PHA02713	557	hypothetical protein; Provisional	86.86
PLN00033	398	photosystem II stability/assembly factor; Provisio	86.83
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	86.02
KOG4659	1899	consensus Uncharacterized conserved protein (Rhs f	86.0
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	85.79
COG4590	733	ABC-type uncharacterized transport system, permeas	85.56
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	85.54
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	85.31
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	83.74
PF12768	281	Rax2: Cortical protein marker for cell polarity	82.97
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	82.75
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	81.63
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	81.31
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	81.27

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=6.8e-49  Score=333.31  Aligned_cols=358  Identities=48%  Similarity=0.831  Sum_probs=312.3

Q ss_pred             CCCCCCCCeeecCCceeeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCC-------------
Q 046394            1 WLMPSEGGYLEAEGVEKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKG-------------   67 (378)
Q Consensus         1 ~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg-------------   67 (378)
                      ||+|.++|||++++.++||.+.|+.+..-+|+.+..+.+.|.....+++.+.++.+|++|+.|+..|             
T Consensus        85 ~Ll~e~~G~le~e~~EkT~~v~Q~~Ia~~Vdi~sa~k~f~L~l~eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~  164 (545)
T KOG1272|consen   85 ILLPETAGYLEAEGLEKTYKVRQDDIAENVDIASATKHFDLSLPEFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLH  164 (545)
T ss_pred             eeccccCCcccccCCcceeeeEHhhhhhhccHHhHHhhccccccccCCeeeeecCCccEEEecCCccceeeeecccceee
Confidence            6899999999999999999999999999999999999999999889999999999999999999988             


Q ss_pred             ---------------------------cEEEEeCCCCeEEeeccCCCeeEEEE-----EEEEEeCCCeEEEEEcCCCcEE
Q 046394           68 ---------------------------YPYFYNRDGTELHCSKEHGEVLKLQF-----LLASINKLGQLRYQNVTMGEIV  115 (378)
Q Consensus        68 ---------------------------~i~iwd~~~~~~~~~~~~~~~~~l~~-----~l~s~~~d~~i~iwd~~~~~~~  115 (378)
                                                 .++|||..|..+++++.|..+..+.|     +|++++..|.+..-|+.+|+.+
T Consensus       165 ~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~GtElHClk~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklV  244 (545)
T KOG1272|consen  165 FEINVMETVRDVTFLHNEQFFAVAQKKYVYVYDNNGTELHCLKRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLV  244 (545)
T ss_pred             eeeehhhhhhhhhhhcchHHHHhhhhceEEEecCCCcEEeehhhcCchhhhcccchhheeeecccCCceEEEeechhhhh
Confidence                                       66777778889999999999888888     8899999999999999999999


Q ss_pred             EEEecCCCCeeEEEEcCCCCEEEEEcCCCe--------------eeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCC
Q 046394          116 GNFWTGLGRTDVIRVNPFNGVVSLGHSGGT--------------MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRK  181 (378)
Q Consensus       116 ~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~--------------~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~  181 (378)
                      ..+....+.+..++.+|-+..+-+|..+|+              +.+|.++|.+|++.++|+|++|+|.|..|+|||+++
T Consensus       245 a~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~  324 (545)
T KOG1272|consen  245 ASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRN  324 (545)
T ss_pred             HHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeecc
Confidence            999999999999999999999999999998              778999999999999999999999999999999999


Q ss_pred             ceeeeee--cCCceEEEEecCCCc--------cccC------CCCCceEEEeeccCCcceeeeEEcCCCCeEEEecCCCe
Q 046394          182 YEVLQTL--PGHAKTLDFSRKDSG--------DFSG------SHNYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGV  245 (378)
Q Consensus       182 ~~~~~~~--~~~i~~~~~sp~g~~--------~~~~------~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~  245 (378)
                      ...+.++  +.+...++||..|..        .+|.      .....+|..+..  +.+|.+|.|+|-.++|.+|+..|+
T Consensus       325 ~~ql~t~~tp~~a~~ls~SqkglLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~--~~~V~~l~FcP~EDvLGIGH~~G~  402 (545)
T KOG1272|consen  325 FYQLHTYRTPHPASNLSLSQKGLLALSYGDHVQIWKDALKGSGHGETPYMNHRC--GGPVEDLRFCPYEDVLGIGHAGGI  402 (545)
T ss_pred             ccccceeecCCCccccccccccceeeecCCeeeeehhhhcCCCCCCcchhhhcc--CcccccceeccHHHeeeccccCCc
Confidence            8888777  577888999988764        3332      234567777765  458999999999999999999999


Q ss_pred             EEEEEcCCCCcccccccCCCccchhhhhhHhhhhhhcCCCCCceecCCCceeeecccccccCcchhhhhhHHHHHHHhhc
Q 046394          246 SGILIPGSGEPNFDSWVANPFETSKQRREKEVHSLLDKLPPETIMLNPSKIGTVREAKKKEKPTKQEREDEMEAAVEAVK  325 (378)
Q Consensus       246 ~~~~~~~s~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (378)
                      .+++++|++|.+++.|..+||++.+|++|.|+++||+++|+++|++||+.|+.++.......+   ++.+...+.+....
T Consensus       403 tsilVPGsGePN~Ds~e~nPfetrKQRqE~EVr~LLeKippElIsLdp~~i~~vd~~~~~~~k---~e~~~~~~~~~~~~  479 (545)
T KOG1272|consen  403 TSILVPGSGEPNYDSLEDNPFETRKQRQEKEVRSLLEKIPPELISLDPRVIGIVDEPSLEEKK---DEIERLFEEKPPEA  479 (545)
T ss_pred             eeEeccCCCCCCcchhccCcchhhhHHhHHHHHHHHhhCChHhEEechhhccccCcccchhhH---HHHHHHhcccCccc
Confidence            999999999999999999999999999999999999999999999999999999987765552   22222223333344


Q ss_pred             ccccccCCCCCCchhhHHHhhhhhhccccchhHHHHHHHH
Q 046394          326 GFVWKNKTKGRNKPSKKAKKKQELVAKAKRPFLDQQLKEE  365 (378)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~  365 (378)
                      ...++.++|+|++..+  .++++++++++|.+.++.++.+
T Consensus       480 ~~~pr~K~Kgr~s~~k--~k~~knvvd~~r~~ve~~le~~  517 (545)
T KOG1272|consen  480 GALPRHKTKGRNSGAK--RKKKKNVVDDARLFVEQSLEKE  517 (545)
T ss_pred             ccCchhhhccCCchHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence            5567888999999877  4455777777777777766543

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=4.8e-39  Score=267.31  Aligned_cols=233  Identities=16%  Similarity=0.200  Sum_probs=206.3

Q ss_pred             ceeeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCe-EEeeccCCCe-eEE
Q 046394           15 VEKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTE-LHCSKEHGEV-LKL   91 (378)
Q Consensus        15 ~~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~-~~~~~~~~~~-~~l   91 (378)
                      ....+..+.|.++++||+.+..+.++.++|...|.|++|||||..||+|+.||+|++|| .+|.+ ...+.+|... +++
T Consensus       127 g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~L  206 (480)
T KOG0271|consen  127 GSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITAL  206 (480)
T ss_pred             CceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEE
Confidence            44566777788999999999999999999999999999999999999999999999999 44544 4779999976 999


Q ss_pred             EE----------EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe----------------
Q 046394           92 QF----------LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT----------------  145 (378)
Q Consensus        92 ~~----------~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~----------------  145 (378)
                      +|          +||+++.||.|+|||+..+.++..+.+|..+|+|++|--+| +|++|+.|++                
T Consensus       207 awep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~~r~lk  285 (480)
T KOG0271|consen  207 AWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKLCRELK  285 (480)
T ss_pred             eecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-eEEecCCCceEEEEEccchhHHHhhc
Confidence            99          89999999999999999999999999999999999996544 7888888887                


Q ss_pred             -----------------------------------------------------------------------------eee
Q 046394          146 -----------------------------------------------------------------------------MLC  148 (378)
Q Consensus       146 -----------------------------------------------------------------------------~~~  148 (378)
                                                                                                   +.+
T Consensus       286 GHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtg  365 (480)
T KOG0271|consen  286 GHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTG  365 (480)
T ss_pred             ccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhc
Confidence                                                                                         778


Q ss_pred             cCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee--c-CCceEEEEecCCCc----------cccCCCCCceEE
Q 046394          149 HQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL--P-GHAKTLDFSRKDSG----------DFSGSHNYNRYM  215 (378)
Q Consensus       149 h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~--~-~~i~~~~~sp~g~~----------~~~~~~~~~~~~  215 (378)
                      |..-|+.+.||||++++|++|.|.+|++||.++|+.+.+|  | +.|..++||.|.+.          .+|+..+.....
T Consensus       366 Hq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~  445 (480)
T KOG0271|consen  366 HQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQ  445 (480)
T ss_pred             hhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecc
Confidence            9999999999999999999999999999999999999999  4 78899999998764          677777777888


Q ss_pred             EeeccCCcceeeeEEcCCCCeEEEecCCCeEEEE
Q 046394          216 GYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGIL  249 (378)
Q Consensus       216 ~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~  249 (378)
                      .+.+ |...|+++.|+|||..+++|+.|.++.+|
T Consensus       446 DLpG-h~DEVf~vDwspDG~rV~sggkdkv~~lw  478 (480)
T KOG0271|consen  446 DLPG-HADEVFAVDWSPDGQRVASGGKDKVLRLW  478 (480)
T ss_pred             cCCC-CCceEEEEEecCCCceeecCCCceEEEee
Confidence            8888 99999999999999776666666555444

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=2.6e-35  Score=237.10  Aligned_cols=234  Identities=15%  Similarity=0.182  Sum_probs=212.9

Q ss_pred             ceeeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCC-------CeEEeeccCCC
Q 046394           15 VEKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDG-------TELHCSKEHGE   87 (378)
Q Consensus        15 ~~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~-------~~~~~~~~~~~   87 (378)
                      ..+.++.++|+.+-|||..|..+++.++.....|..++|+|.|+++|+|+-|+...||+++.       ...+.+.+|.+
T Consensus        67 sr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtg  146 (343)
T KOG0286|consen   67 SRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTG  146 (343)
T ss_pred             cCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccc
Confidence            45678889999999999999999999999999999999999999999999999999999542       23466899999


Q ss_pred             e-eEEEE----EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcC-CCCEEEEEcCCCe--------------ee
Q 046394           88 V-LKLQF----LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNP-FNGVVSLGHSGGT--------------ML  147 (378)
Q Consensus        88 ~-~~l~~----~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~--------------~~  147 (378)
                      . .++.|    .|+|++.|.++.+||+++|+.+..|.+|.+.|.++.++| +++.|++|+-|..              +.
T Consensus       147 ylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~  226 (343)
T KOG0286|consen  147 YLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFE  226 (343)
T ss_pred             eeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeec
Confidence            7 99999    999999999999999999999999999999999999999 8999999999987              88


Q ss_pred             ecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee-----cCCceEEEEecCCCc----------cccCCCCCc
Q 046394          148 CHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL-----PGHAKTLDFSRKDSG----------DFSGSHNYN  212 (378)
Q Consensus       148 ~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~-----~~~i~~~~~sp~g~~----------~~~~~~~~~  212 (378)
                      +|...|++++|.|+|.-|+||+.|++.++||+|..+.+..+     ..+|++++||-.|++          .+|+.-..+
T Consensus       227 ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e  306 (343)
T KOG0286|consen  227 GHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGE  306 (343)
T ss_pred             ccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccc
Confidence            99999999999999999999999999999999999888888     368899999999986          678887788


Q ss_pred             eEEEeeccCCcceeeeEEcCCCCeEEEecCCCeEEEEEcCCCCcccccc
Q 046394          213 RYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILIPGSGEPNFDSW  261 (378)
Q Consensus       213 ~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~~~s~d~~i~~w  261 (378)
                      .+..+.+ |.++|.++..+|||            .-+.+||.|..+++|
T Consensus       307 ~vg~L~G-HeNRvScl~~s~DG------------~av~TgSWDs~lriW  342 (343)
T KOG0286|consen  307 RVGVLAG-HENRVSCLGVSPDG------------MAVATGSWDSTLRIW  342 (343)
T ss_pred             eEEEeec-cCCeeEEEEECCCC------------cEEEecchhHheeec
Confidence            8888888 99999999999999            555667777777777

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=2e-36  Score=254.74  Aligned_cols=233  Identities=13%  Similarity=0.101  Sum_probs=207.2

Q ss_pred             ceeeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCC--CCEEEEEeCCCcEEEEeCCC-CeEEeeccCCCe-eE
Q 046394           15 VEKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSS--GRYMAAAGCKGYPYFYNRDG-TELHCSKEHGEV-LK   90 (378)
Q Consensus        15 ~~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~--g~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~-~~   90 (378)
                      .+..+..+=+|.+++|+..+...+..|.+|...|.++.|+|.  +..||+|+.||++++|+.++ .++..+.+|..- ..
T Consensus       187 s~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~  266 (459)
T KOG0272|consen  187 SKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSR  266 (459)
T ss_pred             CCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhhee
Confidence            344555666799999999999999999999999999999997  56899999999999999766 788899999865 89


Q ss_pred             EEE-----EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe--------------eeecCC
Q 046394           91 LQF-----LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT--------------MLCHQG  151 (378)
Q Consensus        91 l~~-----~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~--------------~~~h~~  151 (378)
                      ++|     +|+|++.|.+.++||+.++..+....+|...|.+++|+|||.++++|+.|..              +.+|..
T Consensus       267 VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k  346 (459)
T KOG0272|consen  267 VAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIK  346 (459)
T ss_pred             eeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEeccccc
Confidence            999     9999999999999999999998888999999999999999999999999877              789999


Q ss_pred             CEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee--c-CCceEEEEecC-CC----------ccccCCCCCceEEEe
Q 046394          152 PVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL--P-GHAKTLDFSRK-DS----------GDFSGSHNYNRYMGY  217 (378)
Q Consensus       152 ~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~--~-~~i~~~~~sp~-g~----------~~~~~~~~~~~~~~~  217 (378)
                      +|.+|+|+|+|..|||||.|++++|||++...++.++  | .-|+.|.|+|+ |.          ..+|...+..++..+
T Consensus       347 ~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksL  426 (459)
T KOG0272|consen  347 EILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSL  426 (459)
T ss_pred             ceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhh
Confidence            9999999999999999999999999999999998888  4 67899999983 33          388999999999999


Q ss_pred             eccCCcceeeeEEcCCCCeEEEecCCCeEEE
Q 046394          218 SMVKGYQIGKVSFRPYEDVLGIGHSMGVSGI  248 (378)
Q Consensus       218 ~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~  248 (378)
                      .+ |...|.++..+||+.++++++.|..+.+
T Consensus       427 aG-He~kV~s~Dis~d~~~i~t~s~DRT~KL  456 (459)
T KOG0272|consen  427 AG-HEGKVISLDISPDSQAIATSSFDRTIKL  456 (459)
T ss_pred             cC-CccceEEEEeccCCceEEEeccCceeee
Confidence            99 9999999999999966555554444333

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1.9e-35  Score=248.81  Aligned_cols=204  Identities=17%  Similarity=0.182  Sum_probs=184.7

Q ss_pred             cCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeeccCCCe-eEEEE-------EEEEEeCCCeEEEEEcCCCc
Q 046394           43 LPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKEHGEV-LKLQF-------LLASINKLGQLRYQNVTMGE  113 (378)
Q Consensus        43 ~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~-~~l~~-------~l~s~~~d~~i~iwd~~~~~  113 (378)
                      +.+.+|..+.||+|+..|+|||.+|.++||+ .+...+.+|.+|..- .++.|       .+|||+.||++++|++.+..
T Consensus       173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~  252 (459)
T KOG0272|consen  173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQET  252 (459)
T ss_pred             cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCc
Confidence            4457889999999999999999999999999 567888999999985 88888       79999999999999999999


Q ss_pred             EEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe--------------eeecCCCEEEEEEecCCCEEEEEECCCeEEEEEc
Q 046394          114 IVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT--------------MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDL  179 (378)
Q Consensus       114 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~--------------~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~  179 (378)
                      ++..+.+|...|..++|+|+|++|++++.|.+              ..||...|.+++|+|||.+++|||.|..-+|||+
T Consensus       253 ~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDl  332 (459)
T KOG0272|consen  253 PLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDL  332 (459)
T ss_pred             chhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeec
Confidence            99999999999999999999999999999998              6799999999999999999999999999999999


Q ss_pred             CCceeeeee--c-CCceEEEEecCCCc----------cccCCCCCceEEEeeccCCcceeeeEEcC-CCCeEEEecCCCe
Q 046394          180 RKYEVLQTL--P-GHAKTLDFSRKDSG----------DFSGSHNYNRYMGYSMVKGYQIGKVSFRP-YEDVLGIGHSMGV  245 (378)
Q Consensus       180 ~~~~~~~~~--~-~~i~~~~~sp~g~~----------~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~g~~l~~~~~~g~  245 (378)
                      ++|.++..+  | ..|.++.|||+|..          .+|+.+....+....+ |.+-|+.|.|+| .|.+|++++.|+.
T Consensus       333 Rtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipA-H~nlVS~Vk~~p~~g~fL~TasyD~t  411 (459)
T KOG0272|consen  333 RTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPA-HSNLVSQVKYSPQEGYFLVTASYDNT  411 (459)
T ss_pred             ccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceeccc-ccchhhheEecccCCeEEEEcccCcc
Confidence            999999999  4 78999999999875          7898888888888888 999999999999 6655555555554


Q ss_pred             EE
Q 046394          246 SG  247 (378)
Q Consensus       246 ~~  247 (378)
                      +.
T Consensus       412 ~k  413 (459)
T KOG0272|consen  412 VK  413 (459)
T ss_pred             ee
Confidence            43

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=2.1e-32  Score=219.02  Aligned_cols=238  Identities=17%  Similarity=0.157  Sum_probs=193.5

Q ss_pred             CeeecCCceeeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeeccCC
Q 046394            8 GYLEAEGVEKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKEHG   86 (378)
Q Consensus         8 ~~l~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~   86 (378)
                      ..+.+.+.|+++.+|.-..   =|...|..+..+.+|...|..+..++||++.++++.|+.+++|| ..|...+.|.+|.
T Consensus        29 ~~l~sasrDk~ii~W~L~~---dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~  105 (315)
T KOG0279|consen   29 DILVSASRDKTIIVWKLTS---DDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHT  105 (315)
T ss_pred             ceEEEcccceEEEEEEecc---CccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecC
Confidence            3444444555554443111   14566778899999999999999999999999999999999999 5668889999999


Q ss_pred             Ce-eEEEE-----EEEEEeCCCeEEEEEcCCCcEEEEEecC--CCCeeEEEEcCC--CCEEEEEcCCCe-----------
Q 046394           87 EV-LKLQF-----LLASINKLGQLRYQNVTMGEIVGNFWTG--LGRTDVIRVNPF--NGVVSLGHSGGT-----------  145 (378)
Q Consensus        87 ~~-~~l~~-----~l~s~~~d~~i~iwd~~~~~~~~~~~~~--~~~v~~~~~s~~--~~~l~~~~~d~~-----------  145 (378)
                      .. .+++|     .+++|+.|.+|.+||+- +.+..++..+  .+-|+|++|+|.  ..+|++++.|+.           
T Consensus       106 ~dVlsva~s~dn~qivSGSrDkTiklwnt~-g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l  184 (315)
T KOG0279|consen  106 KDVLSVAFSTDNRQIVSGSRDKTIKLWNTL-GVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQL  184 (315)
T ss_pred             CceEEEEecCCCceeecCCCcceeeeeeec-ccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcch
Confidence            75 99999     99999999999999985 4454455443  688999999998  679999999998           


Q ss_pred             ---eeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee--cCCceEEEEecCCCc---------cccCCCCC
Q 046394          146 ---MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL--PGHAKTLDFSRKDSG---------DFSGSHNY  211 (378)
Q Consensus       146 ---~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~--~~~i~~~~~sp~g~~---------~~~~~~~~  211 (378)
                         +.+|++.++.+++||||.++++|+.||.+.+||++.++.+.++  ...|.+++|+|+...         .+|+..+.
T Consensus       185 ~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~  264 (315)
T KOG0279|consen  185 RTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPNRYWLCAATATSIKIWDLESK  264 (315)
T ss_pred             hhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCCCeEeeEEecCCceeEeeccCCceEEEeccch
Confidence               7899999999999999999999999999999999999999999  478999999998764         77777766


Q ss_pred             ceEEEeecc--------CCcceeeeEEcCCCCeEEEecCCCeEEEE
Q 046394          212 NRYMGYSMV--------KGYQIGKVSFRPYEDVLGIGHSMGVSGIL  249 (378)
Q Consensus       212 ~~~~~~~~~--------~~~~v~~~~~sp~g~~l~~~~~~g~~~~~  249 (378)
                      ..+..+...        ......+++|++||..|.+|..++.+.+|
T Consensus       265 ~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~  310 (315)
T KOG0279|consen  265 AVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVW  310 (315)
T ss_pred             hhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEE
Confidence            665544321        12346789999999888888777765554

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.9e-33  Score=234.02  Aligned_cols=228  Identities=16%  Similarity=0.212  Sum_probs=195.2

Q ss_pred             eeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeeccCCCe-eEEEE-----EEEEEeCCCeEEEEE
Q 046394           36 RNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKEHGEV-LKLQF-----LLASINKLGQLRYQN  108 (378)
Q Consensus        36 ~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~-~~l~~-----~l~s~~~d~~i~iwd  108 (378)
                      .+..++.+|.++|.|+.|+|+|..|++|+.|.++++|| .+..++++.++|... .+++|     .||+|+.||+|++||
T Consensus       106 rCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwd  185 (480)
T KOG0271|consen  106 RCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWD  185 (480)
T ss_pred             eeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEec
Confidence            34567889999999999999999999999999999999 567789999999986 99999     999999999999999


Q ss_pred             cCCCcEE-EEEecCCCCeeEEEEcC-----CCCEEEEEcCCCe--------------eeecCCCEEEEEEecCCCEEEEE
Q 046394          109 VTMGEIV-GNFWTGLGRTDVIRVNP-----FNGVVSLGHSGGT--------------MLCHQGPVSALAFHPNGHLMATS  168 (378)
Q Consensus       109 ~~~~~~~-~~~~~~~~~v~~~~~s~-----~~~~l~~~~~d~~--------------~~~h~~~v~~~~~sp~g~~l~t~  168 (378)
                      ..+|+++ ..+.+|...|++++|.|     ..++||+++.||.              +.+|..+|+|+.|-.+| +++++
T Consensus       186 pktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-liySg  264 (480)
T KOG0271|consen  186 PKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-LIYSG  264 (480)
T ss_pred             CCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-eEEec
Confidence            9998764 67889999999999976     5679999999998              78999999999998776 89999


Q ss_pred             ECCCeEEEEEcCCceeeeee--c-CCceEEEEecC-----------CC--------------------------------
Q 046394          169 GKDCKIKIWDLRKYEVLQTL--P-GHAKTLDFSRK-----------DS--------------------------------  202 (378)
Q Consensus       169 ~~d~~i~iwd~~~~~~~~~~--~-~~i~~~~~sp~-----------g~--------------------------------  202 (378)
                      |.|++|++|+...|.+++.+  | ..|+.+++|.|           |.                                
T Consensus       265 S~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsD  344 (480)
T KOG0271|consen  265 SQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSD  344 (480)
T ss_pred             CCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecC
Confidence            99999999999999999988  4 56888877742           22                                


Q ss_pred             ---ccccCCCC-CceEEEeeccCCcceeeeEEcCCCCeEEEecCCCeEE------------------------------E
Q 046394          203 ---GDFSGSHN-YNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSG------------------------------I  248 (378)
Q Consensus       203 ---~~~~~~~~-~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~------------------------------~  248 (378)
                         ..+|+... .+++....+ |..-|+.+.||||++++|+++.|..+.                              +
T Consensus       345 d~tlflW~p~~~kkpi~rmtg-Hq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRL  423 (480)
T KOG0271|consen  345 DFTLFLWNPFKSKKPITRMTG-HQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRL  423 (480)
T ss_pred             CceEEEecccccccchhhhhc-hhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccE
Confidence               14555432 335555666 888999999999999999999887544                              7


Q ss_pred             EEcCCCCcccccccCCC
Q 046394          249 LIPGSGEPNFDSWVANP  265 (378)
Q Consensus       249 ~~~~s~d~~i~~w~~~~  265 (378)
                      +++||.|.++++|++..
T Consensus       424 lVS~SkDsTLKvw~V~t  440 (480)
T KOG0271|consen  424 LVSGSKDSTLKVWDVRT  440 (480)
T ss_pred             EEEcCCCceEEEEEeee
Confidence            78999999999998743

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=6.4e-33  Score=232.65  Aligned_cols=235  Identities=15%  Similarity=0.171  Sum_probs=201.3

Q ss_pred             ceeeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEeeccCC-C-eeEEE
Q 046394           15 VEKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTELHCSKEHG-E-VLKLQ   92 (378)
Q Consensus        15 ~~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~-~~~l~   92 (378)
                      .-+.+..++.|...+|+..+-.--..+..|+..|.++.||++|.++++|+.+|.|++|+.+...+..+.+|. . +.+++
T Consensus       108 GRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~~ahh~eaIRdla  187 (464)
T KOG0284|consen  108 GRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKIIQAHHAEAIRDLA  187 (464)
T ss_pred             CceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHHhhHhhhhhhheec
Confidence            456777888899999998666666667899999999999999999999999999999998888888887776 4 49999


Q ss_pred             E-----EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe--------------eeecCCCE
Q 046394           93 F-----LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT--------------MLCHQGPV  153 (378)
Q Consensus        93 ~-----~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~--------------~~~h~~~v  153 (378)
                      |     .|++|+.||+|+|||....+.-..+.+|.-.|.+++|+|...+|++++.|..              +.+|+..|
T Consensus       188 fSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntV  267 (464)
T KOG0284|consen  188 FSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTV  267 (464)
T ss_pred             cCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceE
Confidence            9     8999999999999999988888888999999999999999999999999987              77899999


Q ss_pred             EEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee---cCCceEEEEec-----------CCCccccCCCCCceEEEeec
Q 046394          154 SALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL---PGHAKTLDFSR-----------KDSGDFSGSHNYNRYMGYSM  219 (378)
Q Consensus       154 ~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~~sp-----------~g~~~~~~~~~~~~~~~~~~  219 (378)
                      ..+.|+|++++|+|+|.|..+++||+++.+.+.++   ...++++.|+|           ||....|......++.....
T Consensus       268 l~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~  347 (464)
T KOG0284|consen  268 LAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPP  347 (464)
T ss_pred             EEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCc
Confidence            99999999999999999999999999988888888   36899999999           45555665555555555555


Q ss_pred             cCCcceeeeEEcCCCCeEEEecCCCeEEEE
Q 046394          220 VKGYQIGKVSFRPYEDVLGIGHSMGVSGIL  249 (378)
Q Consensus       220 ~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~  249 (378)
                      .|...|++++|+|-|.+|++|+.|..+.+|
T Consensus       348 AHd~~iwsl~~hPlGhil~tgsnd~t~rfw  377 (464)
T KOG0284|consen  348 AHDGEIWSLAYHPLGHILATGSNDRTVRFW  377 (464)
T ss_pred             ccccceeeeeccccceeEeecCCCcceeee
Confidence            588899999999999555555555544444

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=8.6e-31  Score=223.66  Aligned_cols=232  Identities=18%  Similarity=0.241  Sum_probs=210.5

Q ss_pred             eeeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeeccCCCe-eEEEE
Q 046394           16 EKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKEHGEV-LKLQF   93 (378)
Q Consensus        16 ~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~-~~l~~   93 (378)
                      ...+....++.+++|+. ++..+.+|..|.++|+++.|+..|+||++++.|+++.+|| .+|.....+..|..+ .++.|
T Consensus       248 ~~LatG~~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW  326 (524)
T KOG0273|consen  248 TLLATGSEDGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDW  326 (524)
T ss_pred             CeEEEeecCcEEEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEE
Confidence            34455667899999986 6777889999999999999999999999999999999999 678888888889888 88999


Q ss_pred             ----EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe--------------eeecCCCEEE
Q 046394           94 ----LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT--------------MLCHQGPVSA  155 (378)
Q Consensus        94 ----~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~--------------~~~h~~~v~~  155 (378)
                          -|++++.|+.|+++.+....++.++.+|.+.|+++.|+|.|.+|+++++|++              +.+|...|..
T Consensus       327 ~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t  406 (524)
T KOG0273|consen  327 QSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYT  406 (524)
T ss_pred             ecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceee
Confidence                9999999999999999989999999999999999999999999999999999              7889999999


Q ss_pred             EEEecCC---------CEEEEEECCCeEEEEEcCCceeeeee---cCCceEEEEecCCCc----------cccCCCCCce
Q 046394          156 LAFHPNG---------HLMATSGKDCKIKIWDLRKYEVLQTL---PGHAKTLDFSRKDSG----------DFSGSHNYNR  213 (378)
Q Consensus       156 ~~~sp~g---------~~l~t~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~~sp~g~~----------~~~~~~~~~~  213 (378)
                      +.|+|+|         ..+++++.|++|++||+..+.++++|   ..+|.+++|||+|.+          .+|+.+....
T Consensus       407 ~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l  486 (524)
T KOG0273|consen  407 IKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKL  486 (524)
T ss_pred             EeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchhe
Confidence            9999964         46999999999999999999999999   479999999999986          7788889999


Q ss_pred             EEEeeccCCcceeeeEEcCCCCeEEEecCCCeEEEEE
Q 046394          214 YMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILI  250 (378)
Q Consensus       214 ~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~  250 (378)
                      +..+.+  ...|..|+|+.+|.+|.++..+|.++++.
T Consensus       487 ~~s~~~--~~~Ifel~Wn~~G~kl~~~~sd~~vcvld  521 (524)
T KOG0273|consen  487 VKSYQG--TGGIFELCWNAAGDKLGACASDGSVCVLD  521 (524)
T ss_pred             eEeecC--CCeEEEEEEcCCCCEEEEEecCCCceEEE
Confidence            998876  55699999999999999999999777653

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=8.1e-32  Score=243.49  Aligned_cols=214  Identities=16%  Similarity=0.175  Sum_probs=189.9

Q ss_pred             eeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCC--------------------------------CeEEeecc
Q 046394           37 NQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDG--------------------------------TELHCSKE   84 (378)
Q Consensus        37 ~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~--------------------------------~~~~~~~~   84 (378)
                      +.+++.....++.|..||+|+..||.|..|..|++|.++.                                .....+.+
T Consensus       370 c~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~G  449 (707)
T KOG0263|consen  370 CMYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYG  449 (707)
T ss_pred             EEEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeec
Confidence            3455555567899999999999999999999999998531                                12345788


Q ss_pred             CCCe-eEEEE-----EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe-------------
Q 046394           85 HGEV-LKLQF-----LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT-------------  145 (378)
Q Consensus        85 ~~~~-~~l~~-----~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~-------------  145 (378)
                      |.++ ....|     +|++|+.|+++++|.+.+..++..+.+|..+|+.+.|+|-|-+||+++.|++             
T Consensus       450 H~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlR  529 (707)
T KOG0263|consen  450 HSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLR  529 (707)
T ss_pred             CCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchh
Confidence            9987 88999     9999999999999999999999999999999999999999999999999998             


Q ss_pred             -eeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee---cCCceEEEEecCCCc----------cccCCCCC
Q 046394          146 -MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL---PGHAKTLDFSRKDSG----------DFSGSHNY  211 (378)
Q Consensus       146 -~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~~sp~g~~----------~~~~~~~~  211 (378)
                       +.+|.+.|.|+.|+|+.+|++|||.|.+||+||+.+|..++.|   .++|.+++|||+|++          .+|+...+
T Consensus       530 ifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~  609 (707)
T KOG0263|consen  530 IFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANG  609 (707)
T ss_pred             hhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCC
Confidence             7789999999999999999999999999999999999999999   489999999999986          78898888


Q ss_pred             ceEEEeeccCCcceeeeEEcCCCCeEEEecCCCeEEEEEcCCCCcccccccC
Q 046394          212 NRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILIPGSGEPNFDSWVA  263 (378)
Q Consensus       212 ~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~~~s~d~~i~~w~~  263 (378)
                      .++..+.+ |.+.|+++.||.+|            .++++|+.|.++++||.
T Consensus       610 ~~v~~l~~-Ht~ti~SlsFS~dg------------~vLasgg~DnsV~lWD~  648 (707)
T KOG0263|consen  610 SLVKQLKG-HTGTIYSLSFSRDG------------NVLASGGADNSVRLWDL  648 (707)
T ss_pred             cchhhhhc-ccCceeEEEEecCC------------CEEEecCCCCeEEEEEc
Confidence            88888888 89999999999999            55556666667777764

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=2.7e-31  Score=226.71  Aligned_cols=203  Identities=19%  Similarity=0.266  Sum_probs=180.6

Q ss_pred             CCceEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEeeccCCCe-eEEEE-----EEEEEeCCCeEEEEEcCCCcEEEEEe
Q 046394           46 LGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTELHCSKEHGEV-LKLQF-----LLASINKLGQLRYQNVTMGEIVGNFW  119 (378)
Q Consensus        46 ~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~l~~-----~l~s~~~d~~i~iwd~~~~~~~~~~~  119 (378)
                      ..|++++|+.+|..||+|+.||.++||+.+|..+.++..|.++ .++.|     +|++++.|+++.+||..+|...+.|.
T Consensus       236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~  315 (524)
T KOG0273|consen  236 KDVTSLDWNNDGTLLATGSEDGEARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFE  315 (524)
T ss_pred             CCcceEEecCCCCeEEEeecCcEEEEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeee
Confidence            4799999999999999999999999999999999999999998 99999     99999999999999999999999999


Q ss_pred             cCCCCeeEEEEcCCCCEEEEEcCCCe--------------eeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceee
Q 046394          120 TGLGRTDVIRVNPFNGVVSLGHSGGT--------------MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVL  185 (378)
Q Consensus       120 ~~~~~v~~~~~s~~~~~l~~~~~d~~--------------~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~  185 (378)
                      .|..+...+.|-.+. .|++.+.|+.              +.+|.++|.++.|+|.|.+|+|+|.|++++||......+.
T Consensus       316 ~~s~~~lDVdW~~~~-~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~  394 (524)
T KOG0273|consen  316 FHSAPALDVDWQSND-EFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSV  394 (524)
T ss_pred             eccCCccceEEecCc-eEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcch
Confidence            888776667775443 4455555544              7889999999999999999999999999999999888888


Q ss_pred             eee--c-CCceEEEEecCCCc-------------------cccCCCCCceEEEeeccCCcceeeeEEcCCCCeEEEecCC
Q 046394          186 QTL--P-GHAKTLDFSRKDSG-------------------DFSGSHNYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSM  243 (378)
Q Consensus       186 ~~~--~-~~i~~~~~sp~g~~-------------------~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~  243 (378)
                      +.+  | ..|..+.|||+|..                   .+|+...+.++..+.. |..+|++|+|+|+|++||+|+.|
T Consensus       395 ~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~k-H~~pVysvafS~~g~ylAsGs~d  473 (524)
T KOG0273|consen  395 HDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMK-HQEPVYSVAFSPNGRYLASGSLD  473 (524)
T ss_pred             hhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeecc-CCCceEEEEecCCCcEEEecCCC
Confidence            877  4 67999999998862                   7888899999999877 99999999999999999999999


Q ss_pred             CeEEEEE
Q 046394          244 GVSGILI  250 (378)
Q Consensus       244 g~~~~~~  250 (378)
                      |.+.+|-
T Consensus       474 g~V~iws  480 (524)
T KOG0273|consen  474 GCVHIWS  480 (524)
T ss_pred             CeeEecc
Confidence            9877764

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=99.97  E-value=2e-29  Score=202.07  Aligned_cols=215  Identities=16%  Similarity=0.156  Sum_probs=181.0

Q ss_pred             eeeEEeecCCCCceEEEEcCCC-CEEEEEeCCCcEEEEeC------CCCeEEeeccCCCe-eEEEE-----EEEEEeCCC
Q 046394           36 RNQYDIMLPELGPYTLDFTSSG-RYMAAAGCKGYPYFYNR------DGTELHCSKEHGEV-LKLQF-----LLASINKLG  102 (378)
Q Consensus        36 ~~~~~l~~~~~~v~~~~~sp~g-~~l~~~~~dg~i~iwd~------~~~~~~~~~~~~~~-~~l~~-----~l~s~~~d~  102 (378)
                      ...-.+.+|++.|..++..+.+ ..|++++.|..+.+|++      .|.+++.+.+|... ..+..     ++++++.|+
T Consensus         6 ~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~   85 (315)
T KOG0279|consen    6 VLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDG   85 (315)
T ss_pred             eeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccc
Confidence            3456789999999999999875 57889999999999994      35678899999875 66665     999999999


Q ss_pred             eEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe-------------eee--cCCCEEEEEEecC--CCEE
Q 046394          103 QLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT-------------MLC--HQGPVSALAFHPN--GHLM  165 (378)
Q Consensus       103 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~-------------~~~--h~~~v~~~~~sp~--g~~l  165 (378)
                      ++++||+.+++..+.|.+|...|.+++|+||++.+++|+.|.+             +..  |.+.|.|++|+|+  .-+|
T Consensus        86 ~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~I  165 (315)
T KOG0279|consen   86 TLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPII  165 (315)
T ss_pred             eEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEE
Confidence            9999999999999999999999999999999999999999998             222  3788999999997  6789


Q ss_pred             EEEECCCeEEEEEcCCceeeeee--c-CCceEEEEecCCCc----------cccCCCCCceEEEeeccCCcceeeeEEcC
Q 046394          166 ATSGKDCKIKIWDLRKYEVLQTL--P-GHAKTLDFSRKDSG----------DFSGSHNYNRYMGYSMVKGYQIGKVSFRP  232 (378)
Q Consensus       166 ~t~~~d~~i~iwd~~~~~~~~~~--~-~~i~~~~~sp~g~~----------~~~~~~~~~~~~~~~~~~~~~v~~~~~sp  232 (378)
                      +++|.|++|++||+++.+....+  | +.++.+++||||..          .+|+....+.++.+.  +...|.+++|+|
T Consensus       166 vs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~--a~~~v~sl~fsp  243 (315)
T KOG0279|consen  166 VSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE--AFDIVNSLCFSP  243 (315)
T ss_pred             EEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEecc--CCCeEeeEEecC
Confidence            99999999999999999998888  3 78899999999986          667766666665554  678899999999


Q ss_pred             CCCeEEEecCCCeEEEEEcCCCCcccccccCCC
Q 046394          233 YEDVLGIGHSMGVSGILIPGSGEPNFDSWVANP  265 (378)
Q Consensus       233 ~g~~l~~~~~~g~~~~~~~~s~d~~i~~w~~~~  265 (378)
                      +...|+.+             -+..|+||+..+
T Consensus       244 nrywL~~a-------------t~~sIkIwdl~~  263 (315)
T KOG0279|consen  244 NRYWLCAA-------------TATSIKIWDLES  263 (315)
T ss_pred             CceeEeec-------------cCCceEEEeccc
Confidence            96444433             344478887644

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.97  E-value=1.2e-28  Score=213.28  Aligned_cols=232  Identities=12%  Similarity=0.122  Sum_probs=191.8

Q ss_pred             ceeeEEEeccceeeeeecccceeeEEee---cCCCCceEEEEcCCCCEEEEEeCCCcEEEEeC-CCCeEEeeccCCCe--
Q 046394           15 VEKTWRIKQEAIAREVDILSSRNQYDIM---LPELGPYTLDFTSSGRYMAAAGCKGYPYFYNR-DGTELHCSKEHGEV--   88 (378)
Q Consensus        15 ~~~~~~~~~~~~i~~~d~~~~~~~~~l~---~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~--   88 (378)
                      .++++....|+.+.+||-.+++++..|.   +|.++|++++|+||+..+++++.|.+++|||. +...+.++.....+  
T Consensus       202 G~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~d  281 (603)
T KOG0318|consen  202 GSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVED  281 (603)
T ss_pred             CCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhc
Confidence            6778888999999999999999999998   89999999999999999999999999999994 55666666544432  


Q ss_pred             --eEEEE---EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe------------------
Q 046394           89 --LKLQF---LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT------------------  145 (378)
Q Consensus        89 --~~l~~---~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~------------------  145 (378)
                        ..+.|   .|++.+.+|+|.+++.....++..+.+|...|++++.+|++.+|++|+.||.                  
T Consensus       282 qqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~  361 (603)
T KOG0318|consen  282 QQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKG  361 (603)
T ss_pred             eEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCcccccccccc
Confidence              45556   9999999999999999999999999999999999999999999999999998                  


Q ss_pred             ---------------------------------------------------------------------eeec-------
Q 046394          146 ---------------------------------------------------------------------MLCH-------  149 (378)
Q Consensus       146 ---------------------------------------------------------------------~~~h-------  149 (378)
                                                                                           +..+       
T Consensus       362 h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~  441 (603)
T KOG0318|consen  362 HTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIP  441 (603)
T ss_pred             ccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeec
Confidence                                                                                 1111       


Q ss_pred             -CCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeee---e--cCCceEEEEecCCCc----------cccCCCCCce
Q 046394          150 -QGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQT---L--PGHAKTLDFSRKDSG----------DFSGSHNYNR  213 (378)
Q Consensus       150 -~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~---~--~~~i~~~~~sp~g~~----------~~~~~~~~~~  213 (378)
                       .....+++++|+++.++.|+.|+.|+||.+..+.+...   +  .+.+++++|||||.+          .+|+..+...
T Consensus       442 ~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~  521 (603)
T KOG0318|consen  442 IGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREV  521 (603)
T ss_pred             cccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCce
Confidence             22356899999999999999999999999987554322   2  589999999999997          3444444433


Q ss_pred             E-EEeeccCCcceeeeEEcCCCCeEEEecCCCeEE
Q 046394          214 Y-MGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSG  247 (378)
Q Consensus       214 ~-~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~  247 (378)
                      . ..|.. |...|.+++|+|+..++|+|+-|-.+.
T Consensus       522 ~~~~w~F-HtakI~~~aWsP~n~~vATGSlDt~Vi  555 (603)
T KOG0318|consen  522 KTNRWAF-HTAKINCVAWSPNNKLVATGSLDTNVI  555 (603)
T ss_pred             ecceeee-eeeeEEEEEeCCCceEEEeccccceEE
Confidence            2 23444 889999999999998877777776443

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.97  E-value=4.7e-29  Score=224.25  Aligned_cols=226  Identities=19%  Similarity=0.230  Sum_probs=192.3

Q ss_pred             ceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeeccCCCe-eEEEE-----EEEE
Q 046394           25 AIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKEHGEV-LKLQF-----LLAS   97 (378)
Q Consensus        25 ~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~-~~l~~-----~l~s   97 (378)
                      +.+-||+..+..-+....+|...+.++++||||++||+|+.||.|+||| .+|.++.++..|+.. +.+.|     .+++
T Consensus       330 gQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~lls  409 (893)
T KOG0291|consen  330 GQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLS  409 (893)
T ss_pred             ceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEE
Confidence            5889999999999999999999999999999999999999999999999 789999999999976 99999     8999


Q ss_pred             EeCCCeEEEEEcCCCcEEEEEecC-CCCeeEEEEcCCCCEEEEEcCCCe---------------eeecCCCEEEEEEecC
Q 046394           98 INKLGQLRYQNVTMGEIVGNFWTG-LGRTDVIRVNPFNGVVSLGHSGGT---------------MLCHQGPVSALAFHPN  161 (378)
Q Consensus        98 ~~~d~~i~iwd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~d~~---------------~~~h~~~v~~~~~sp~  161 (378)
                      ++-||+|+.||+......++|... .-+..|++..|.|.++..|+.|.-               +.||.++|.+++|+|+
T Consensus       410 sSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~  489 (893)
T KOG0291|consen  410 SSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPD  489 (893)
T ss_pred             eecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccc
Confidence            999999999999999999998754 467889999999999999998876               7899999999999999


Q ss_pred             CCEEEEEECCCeEEEEEcCCc-eeeeee--cCCceEEEEecCCCc----------cccCCCCCceEEEee----------
Q 046394          162 GHLMATSGKDCKIKIWDLRKY-EVLQTL--PGHAKTLDFSRKDSG----------DFSGSHNYNRYMGYS----------  218 (378)
Q Consensus       162 g~~l~t~~~d~~i~iwd~~~~-~~~~~~--~~~i~~~~~sp~g~~----------~~~~~~~~~~~~~~~----------  218 (378)
                      |..|+++|.|.+|++||+-.. ....++  ...+..++|+|||.-          .+|+...........          
T Consensus       490 ~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~  569 (893)
T KOG0291|consen  490 GSLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRK  569 (893)
T ss_pred             cCeEEeccccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhcccccc
Confidence            999999999999999998653 344555  578999999999873          344433222221111          


Q ss_pred             ---------ccCCcceeeeEEcCCCCeEEEecCCCeEEEEE
Q 046394          219 ---------MVKGYQIGKVSFRPYEDVLGIGHSMGVSGILI  250 (378)
Q Consensus       219 ---------~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~  250 (378)
                               ...+.+.+.+++|+||.++++|+....++++.
T Consensus       570 ~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~  610 (893)
T KOG0291|consen  570 ETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYD  610 (893)
T ss_pred             ccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEE
Confidence                     11456789999999999999999888777664

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=1.5e-29  Score=209.61  Aligned_cols=226  Identities=17%  Similarity=0.218  Sum_probs=200.8

Q ss_pred             EEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCC--CeEEeeccCCCe-eEEEE---
Q 046394           20 RIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDG--TELHCSKEHGEV-LKLQF---   93 (378)
Q Consensus        20 ~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~-~~l~~---   93 (378)
                      ..+.+.+|++||..+++....|.+|..+|..|+|+..|.+|++++.|-.+.+||...  .++..+.+|... .++.|   
T Consensus       125 ~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~  204 (406)
T KOG0295|consen  125 SASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPL  204 (406)
T ss_pred             EecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEec
Confidence            344589999999999999999999999999999999999999999999999999644  566778888876 88888   


Q ss_pred             --EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe--------------eeecCCCEEEEE
Q 046394           94 --LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT--------------MLCHQGPVSALA  157 (378)
Q Consensus        94 --~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~--------------~~~h~~~v~~~~  157 (378)
                        ++++++.|.+|+.|++.+|-++.+|.+|...|..++.+.||.++|+++.|..              +..|..+|.+++
T Consensus       205 gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~  284 (406)
T KOG0295|consen  205 GDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIA  284 (406)
T ss_pred             CCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEE
Confidence              9999999999999999999999999999999999999999999999999988              678999999999


Q ss_pred             EecC---------------CCEEEEEECCCeEEEEEcCCceeeeee--c-CCceEEEEecCCCc----------cccCCC
Q 046394          158 FHPN---------------GHLMATSGKDCKIKIWDLRKYEVLQTL--P-GHAKTLDFSRKDSG----------DFSGSH  209 (378)
Q Consensus       158 ~sp~---------------g~~l~t~~~d~~i~iwd~~~~~~~~~~--~-~~i~~~~~sp~g~~----------~~~~~~  209 (378)
                      |-|.               +.++++++.|++|++||+.++.++.++  | ..|..++|+|.|+|          .+|+..
T Consensus       285 wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~  364 (406)
T KOG0295|consen  285 WAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLK  364 (406)
T ss_pred             ecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEec
Confidence            9763               358999999999999999999999999  4 78999999999986          788888


Q ss_pred             CCceEEEeeccCCcceeeeEEcCCCCeEEEecCCCeE
Q 046394          210 NYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVS  246 (378)
Q Consensus       210 ~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~  246 (378)
                      ..++...+.. |..-|+++.|+-+-.++++|+-|-.+
T Consensus       365 ~~~cmk~~~a-h~hfvt~lDfh~~~p~VvTGsVdqt~  400 (406)
T KOG0295|consen  365 NLQCMKTLEA-HEHFVTSLDFHKTAPYVVTGSVDQTV  400 (406)
T ss_pred             cceeeeccCC-CcceeEEEecCCCCceEEecccccee
Confidence            8888888887 88889999999988655554444433

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.97  E-value=3.5e-28  Score=210.48  Aligned_cols=245  Identities=15%  Similarity=0.155  Sum_probs=208.2

Q ss_pred             eecCCceeeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCC-------------
Q 046394           10 LEAEGVEKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDG-------------   76 (378)
Q Consensus        10 l~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~-------------   76 (378)
                      |-.+.....+.+.+...+-+.++........+..|...++-..|||.|.|+|+|...|.|+|||..+             
T Consensus        24 ig~dpkgd~ilY~nGksv~ir~i~~~~~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~a  103 (603)
T KOG0318|consen   24 IGGDPKGDNILYTNGKSVIIRNIDNPASVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLA  103 (603)
T ss_pred             eccCCCCCeEEEeCCCEEEEEECCCccceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecc
Confidence            4444466778888999999999999999999999999999999999999999999999999999322             


Q ss_pred             ----------------------------------CeEEeeccCCCe-eEEEE------EEEEEeCCCeEEEEEcCCCcEE
Q 046394           77 ----------------------------------TELHCSKEHGEV-LKLQF------LLASINKLGQLRYQNVTMGEIV  115 (378)
Q Consensus        77 ----------------------------------~~~~~~~~~~~~-~~l~~------~l~s~~~d~~i~iwd~~~~~~~  115 (378)
                                                        ..+-.+.+|... ++++|      .++||+.|++|.+|+-.-.+.-
T Consensus       104 G~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk  183 (603)
T KOG0318|consen  104 GPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFK  183 (603)
T ss_pred             cccccceeCCCCcEEEEEecCccceeEEEEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeee
Confidence                                              011223456555 77777      8999999999999987777777


Q ss_pred             EEEecCCCCeeEEEEcCCCCEEEEEcCCCe--------------e---eecCCCEEEEEEecCCCEEEEEECCCeEEEEE
Q 046394          116 GNFWTGLGRTDVIRVNPFNGVVSLGHSGGT--------------M---LCHQGPVSALAFHPNGHLMATSGKDCKIKIWD  178 (378)
Q Consensus       116 ~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~--------------~---~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd  178 (378)
                      .++..|...|+|+.|+|||..|++++.||.              +   .+|.+.|.+++|+||+..|+|+|.|.+++|||
T Consensus       184 ~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWd  263 (603)
T KOG0318|consen  184 SSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWD  263 (603)
T ss_pred             ecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEE
Confidence            888889999999999999999999999998              3   37999999999999999999999999999999


Q ss_pred             cCCceeeeee--cCC-----c-------eEEEEecCCCccccCCCCCceEEEeeccCCcceeeeEEcCCCCeEEEecCCC
Q 046394          179 LRKYEVLQTL--PGH-----A-------KTLDFSRKDSGDFSGSHNYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMG  244 (378)
Q Consensus       179 ~~~~~~~~~~--~~~-----i-------~~~~~sp~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g  244 (378)
                      +.+.+++.++  ...     +       .-+..|-+|.+.+.+.....++....+ |...|+++..+|++.+|.+|+.||
T Consensus       264 Vs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~G-HnK~ITaLtv~~d~~~i~SgsyDG  342 (603)
T KOG0318|consen  264 VSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISG-HNKSITALTVSPDGKTIYSGSYDG  342 (603)
T ss_pred             eeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecc-cccceeEEEEcCCCCEEEeeccCc
Confidence            9999999888  221     1       224556677778888888888889999 999999999999999999999999


Q ss_pred             eEEEEEcCCCC
Q 046394          245 VSGILIPGSGE  255 (378)
Q Consensus       245 ~~~~~~~~s~d  255 (378)
                      .+.-|.++++.
T Consensus       343 ~I~~W~~~~g~  353 (603)
T KOG0318|consen  343 HINSWDSGSGT  353 (603)
T ss_pred             eEEEEecCCcc
Confidence            99988877653

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.97  E-value=1.2e-28  Score=199.54  Aligned_cols=222  Identities=13%  Similarity=0.156  Sum_probs=189.2

Q ss_pred             eccceeeeeec-ccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeeccCCCe-eEEEE-----
Q 046394           22 KQEAIAREVDI-LSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKEHGEV-LKLQF-----   93 (378)
Q Consensus        22 ~~~~~i~~~d~-~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~-~~l~~-----   93 (378)
                      ..|..|-+|++ ...+....+++|.++|..+.|.+|++.|+++|.|.+|+.|| .+|+.+..+++|... +++.-     
T Consensus        66 G~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~  145 (338)
T KOG0265|consen   66 GSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGP  145 (338)
T ss_pred             CCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCC
Confidence            33445555553 45567788899999999999999999999999999999999 788999999999987 66655     


Q ss_pred             -EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe--------------eeecCCCEEEEEE
Q 046394           94 -LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT--------------MLCHQGPVSALAF  158 (378)
Q Consensus        94 -~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~--------------~~~h~~~v~~~~~  158 (378)
                       ++.+++.|+++++||+++..++.++. ..-+++++.|..++..+.+|+-|+.              +.+|.++|+.+..
T Consensus       146 ~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsl  224 (338)
T KOG0265|consen  146 QLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSL  224 (338)
T ss_pred             eEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEe
Confidence             88899999999999999988888774 3467899999999999999998865              7899999999999


Q ss_pred             ecCCCEEEEEECCCeEEEEEcCCc----eeeeee----c---CCceEEEEecCCCc----------cccCCCCCceEEEe
Q 046394          159 HPNGHLMATSGKDCKIKIWDLRKY----EVLQTL----P---GHAKTLDFSRKDSG----------DFSGSHNYNRYMGY  217 (378)
Q Consensus       159 sp~g~~l~t~~~d~~i~iwd~~~~----~~~~~~----~---~~i~~~~~sp~g~~----------~~~~~~~~~~~~~~  217 (378)
                      +|+|.++++-+.|.++++||++-.    .++..+    +   -..-..+|||++.+          .+|+......++.+
T Consensus       225 s~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lykl  304 (338)
T KOG0265|consen  225 SRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKL  304 (338)
T ss_pred             ccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEc
Confidence            999999999999999999999853    334444    1   23466799999875          78898888889999


Q ss_pred             eccCCcceeeeEEcCCCCeEEEecCCCe
Q 046394          218 SMVKGYQIGKVSFRPYEDVLGIGHSMGV  245 (378)
Q Consensus       218 ~~~~~~~v~~~~~sp~g~~l~~~~~~g~  245 (378)
                      .+ |...|+++.|+|...+|.+++.|..
T Consensus       305 pG-h~gsvn~~~Fhp~e~iils~~sdk~  331 (338)
T KOG0265|consen  305 PG-HYGSVNEVDFHPTEPIILSCSSDKT  331 (338)
T ss_pred             CC-cceeEEEeeecCCCcEEEEeccCce
Confidence            99 9899999999999998888888873

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=99.97  E-value=5.7e-28  Score=190.75  Aligned_cols=227  Identities=14%  Similarity=0.175  Sum_probs=186.1

Q ss_pred             EEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCC---CCeEEeeccCCC-eeEEEE--
Q 046394           20 RIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRD---GTELHCSKEHGE-VLKLQF--   93 (378)
Q Consensus        20 ~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~---~~~~~~~~~~~~-~~~l~~--   93 (378)
                      +.+.|.+|++|...+|.+..++...++-|+.+...|+++.||+++.. .|++||++   ..++.++.+|.. ++++.|  
T Consensus        15 sA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~   93 (311)
T KOG0315|consen   15 SAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQ-HVRLYDLNSNNPNPVATFEGHTKNVTAVGFQC   93 (311)
T ss_pred             eccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCC-eeEEEEccCCCCCceeEEeccCCceEEEEEee
Confidence            34456667777799999999999999999999999999999998765 79999942   347899999965 599999  


Q ss_pred             ---EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe---------------eeecCCCEEE
Q 046394           94 ---LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT---------------MLCHQGPVSA  155 (378)
Q Consensus        94 ---~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~---------------~~~h~~~v~~  155 (378)
                         .++|||.||+++|||++...+.+.+. +..+|+++..+|+...|+++..+|.               +......|.+
T Consensus        94 dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~s  172 (311)
T KOG0315|consen   94 DGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQS  172 (311)
T ss_pred             cCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceee
Confidence               99999999999999999977777775 5699999999999999999999998               2223467899


Q ss_pred             EEEecCCCEEEEEECCCeEEEEEcCCce------eeeee---cCCceEEEEecCCCc----------cccCCCCC-ceEE
Q 046394          156 LAFHPNGHLMATSGKDCKIKIWDLRKYE------VLQTL---PGHAKTLDFSRKDSG----------DFSGSHNY-NRYM  215 (378)
Q Consensus       156 ~~~sp~g~~l~t~~~d~~i~iwd~~~~~------~~~~~---~~~i~~~~~sp~g~~----------~~~~~~~~-~~~~  215 (378)
                      ++..|||.+++.+...|..++|++-+..      ++..+   .+.+..+.+|||+++          .+|+..+. ..-.
T Consensus       173 l~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~  252 (311)
T KOG0315|consen  173 LTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLEL  252 (311)
T ss_pred             EEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEE
Confidence            9999999999999999999999987643      33444   378899999999997          66776665 4445


Q ss_pred             EeeccCCcceeeeEEcCCCCeEEEecCCCeEEEE
Q 046394          216 GYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGIL  249 (378)
Q Consensus       216 ~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~  249 (378)
                      ...+ |...+.+++||.||.||++|+.|+..++|
T Consensus       253 ~l~g-h~rWvWdc~FS~dg~YlvTassd~~~rlW  285 (311)
T KOG0315|consen  253 VLTG-HQRWVWDCAFSADGEYLVTASSDHTARLW  285 (311)
T ss_pred             Eeec-CCceEEeeeeccCccEEEecCCCCceeec
Confidence            5666 77889999999999776666666544444

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=99.97  E-value=7.4e-28  Score=194.27  Aligned_cols=217  Identities=16%  Similarity=0.193  Sum_probs=182.0

Q ss_pred             eEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeeccCCCe-eEEEE-----EEEEEeCCCeEEEEEcC
Q 046394           38 QYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKEHGEV-LKLQF-----LLASINKLGQLRYQNVT  110 (378)
Q Consensus        38 ~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~-~~l~~-----~l~s~~~d~~i~iwd~~  110 (378)
                      ...|++|...|+++.|++|+++|++++.||.+.||| .++..++.+.-.... ...+|     ++|+|+-|+...||++.
T Consensus        48 rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls  127 (343)
T KOG0286|consen   48 RRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLS  127 (343)
T ss_pred             EEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecc
Confidence            478999999999999999999999999999999999 788888888777765 77888     99999999999999998


Q ss_pred             CC------cEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe--------------eeecCCCEEEEEEec-CCCEEEEEE
Q 046394          111 MG------EIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT--------------MLCHQGPVSALAFHP-NGHLMATSG  169 (378)
Q Consensus       111 ~~------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~--------------~~~h~~~v~~~~~sp-~g~~l~t~~  169 (378)
                      +.      ...+.+.+|.+.+.|+.|.+ ...|++++.|.+              +.+|.+.|.+++++| +++.|++|+
T Consensus       128 ~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~  206 (343)
T KOG0286|consen  128 TRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGG  206 (343)
T ss_pred             cccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecc
Confidence            65      34567889999999999999 456677777776              889999999999999 999999999


Q ss_pred             CCCeEEEEEcCCceeeeee--c-CCceEEEEecCCCc----------cccCCCCCceEEEeec-cCCcceeeeEEcCCCC
Q 046394          170 KDCKIKIWDLRKYEVLQTL--P-GHAKTLDFSRKDSG----------DFSGSHNYNRYMGYSM-VKGYQIGKVSFRPYED  235 (378)
Q Consensus       170 ~d~~i~iwd~~~~~~~~~~--~-~~i~~~~~sp~g~~----------~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~g~  235 (378)
                      .|++.+|||+|.+.+.++|  | +.|+++.|.|+|.-          .+++.+..+.+..+.. ....+|++++||-.|+
T Consensus       207 cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGR  286 (343)
T KOG0286|consen  207 CDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGR  286 (343)
T ss_pred             cccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEccccc
Confidence            9999999999999999999  3 78999999999874          4555554444444432 1356799999999998


Q ss_pred             eEEEecCCCeEEEEEcCCCC
Q 046394          236 VLGIGHSMGVSGILIPGSGE  255 (378)
Q Consensus       236 ~l~~~~~~g~~~~~~~~s~d  255 (378)
                      +|.+|..|..+.+|.+-.++
T Consensus       287 lLfagy~d~~c~vWDtlk~e  306 (343)
T KOG0286|consen  287 LLFAGYDDFTCNVWDTLKGE  306 (343)
T ss_pred             EEEeeecCCceeEeeccccc
Confidence            88888777766666544443

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=5.3e-30  Score=212.24  Aligned_cols=306  Identities=13%  Similarity=0.064  Sum_probs=216.6

Q ss_pred             eEEeecCCCCceEEEEcCCC-CEEEEEeCCCcEEEEeC-CCCeEEeeccCCCe-eEEEE---EEEEEeCCCeEEEEEcCC
Q 046394           38 QYDIMLPELGPYTLDFTSSG-RYMAAAGCKGYPYFYNR-DGTELHCSKEHGEV-LKLQF---LLASINKLGQLRYQNVTM  111 (378)
Q Consensus        38 ~~~l~~~~~~v~~~~~sp~g-~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~-~~l~~---~l~s~~~d~~i~iwd~~~  111 (378)
                      +..|.+|..+|.|++-+|.. ..+|+|+.||.|+|||+ ...++.++.+|.+. ..+++   .++++|.|.+|+.|-+.-
T Consensus        59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~~~~~tvgdDKtvK~wk~~~  138 (433)
T KOG0268|consen   59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQTSFFTVGDDKTVKQWKIDG  138 (433)
T ss_pred             hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecccceEEecCCcceeeeeccC
Confidence            44578999999999999987 78999999999999995 45678899999986 88888   999999999999999854


Q ss_pred             CcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe------------eeecCCCEEEEEEecC-CCEEEEEECCCeEEEEE
Q 046394          112 GEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT------------MLCHQGPVSALAFHPN-GHLMATSGKDCKIKIWD  178 (378)
Q Consensus       112 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~------------~~~h~~~v~~~~~sp~-g~~l~t~~~d~~i~iwd  178 (378)
                       .++.++. ....+..+.-+..+..+++++.+-.            +......|.++.|+|. ...|++|+.|++|.|||
T Consensus       139 -~p~~til-g~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD  216 (433)
T KOG0268|consen  139 -PPLHTIL-GKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYD  216 (433)
T ss_pred             -Ccceeee-ccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEe
Confidence             4666664 3466778888888888998886554            4455677899999994 45688888999999999


Q ss_pred             cCCceeeeee--cCCceEEEEecCCCccc----------cCC-CCCceEEEeeccCCcceeeeEEcCCCCeEEEecCCCe
Q 046394          179 LRKYEVLQTL--PGHAKTLDFSRKDSGDF----------SGS-HNYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGV  245 (378)
Q Consensus       179 ~~~~~~~~~~--~~~i~~~~~sp~g~~~~----------~~~-~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~  245 (378)
                      ++++.+++.+  ....+.|+|+|.+...+          ++. ....++..+.+ |.+.|.+|.|||.|+          
T Consensus       217 ~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~d-hvsAV~dVdfsptG~----------  285 (433)
T KOG0268|consen  217 LRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKD-HVSAVMDVDFSPTGQ----------  285 (433)
T ss_pred             cccCCccceeeeeccccceecCccccceeeccccccceehhhhhhcccchhhcc-cceeEEEeccCCCcc----------
Confidence            9999999888  68889999999554322          222 23345667777 999999999999994          


Q ss_pred             EEEEEcCCCCcccccccCCCccchhhhhhHhhhhhhcCCCCCceecCCCceeeecccccccCcchhhhhhHHHHHHHhhc
Q 046394          246 SGILIPGSGEPNFDSWVANPFETSKQRREKEVHSLLDKLPPETIMLNPSKIGTVREAKKKEKPTKQEREDEMEAAVEAVK  325 (378)
Q Consensus       246 ~~~~~~~s~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (378)
                        -+++||.|.+|+|+..+.-..-.....+-.    ...-.-..+.|..+|-....+.+...|+....+....-...++.
T Consensus       286 --EfvsgsyDksIRIf~~~~~~SRdiYhtkRM----q~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Aseklgv~t~rEk~  359 (433)
T KOG0268|consen  286 --EFVSGSYDKSIRIFPVNHGHSRDIYHTKRM----QHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKLGVITPREKN  359 (433)
T ss_pred             --hhccccccceEEEeecCCCcchhhhhHhhh----heeeEEEEeccccEEEecCCCcceeeeecchhhhcCCCChhHHH
Confidence              455666666666666543222111000000    01112245677778888888888888877665544333333344


Q ss_pred             ccccccCCCCCCchhhHHHhhhhhhccccchhHHHHH
Q 046394          326 GFVWKNKTKGRNKPSKKAKKKQELVAKAKRPFLDQQL  362 (378)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~  362 (378)
                      ..+...+.|.+.+.-.+.|+..++...++..+.+++.
T Consensus       360 ~~~Y~e~Lke~y~~~peIkRIarHR~lPk~i~~a~ki  396 (433)
T KOG0268|consen  360 KLEYNEALKERYKHLPEIKRIARHRHLPKPIKKAQKI  396 (433)
T ss_pred             HHHHHHHHHHHHhhcHHHHHHHhhccCCHHHHHHHHH
Confidence            4444455555555555666666666666654444433

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=3.3e-28  Score=216.29  Aligned_cols=235  Identities=14%  Similarity=0.177  Sum_probs=201.4

Q ss_pred             eeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeecc-CCCe-eEEEE
Q 046394           17 KTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKE-HGEV-LKLQF   93 (378)
Q Consensus        17 ~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~-~~~~-~~l~~   93 (378)
                      ..+.+.-...+++|+..++........+...|+++.|+++|.+||+|..+|.|.||| .+...+..+.+ |..- .+++|
T Consensus       189 n~laValg~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW  268 (484)
T KOG0305|consen  189 NVLAVALGQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAW  268 (484)
T ss_pred             CeEEEEecceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEec
Confidence            355666677899999999987666666688999999999999999999999999999 45666777887 6654 99999


Q ss_pred             ---EEEEEeCCCeEEEEEcCCCcEEEE-EecCCCCeeEEEEcCCCCEEEEEcCCCe--------------eeecCCCEEE
Q 046394           94 ---LLASINKLGQLRYQNVTMGEIVGN-FWTGLGRTDVIRVNPFNGVVSLGHSGGT--------------MLCHQGPVSA  155 (378)
Q Consensus        94 ---~l~s~~~d~~i~iwd~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~d~~--------------~~~h~~~v~~  155 (378)
                         .+.+|+.|+.|..+|++..+.... +.+|...|..+.|++|+.++|+|+.|+.              +..|.+.|.+
T Consensus       269 ~~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA  348 (484)
T KOG0305|consen  269 NSSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKA  348 (484)
T ss_pred             cCceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeE
Confidence               899999999999999998776554 7789999999999999999999999988              7789999999


Q ss_pred             EEEec-CCCEEEEEE--CCCeEEEEEcCCceeeeee--cCCceEEEEecCCC------------ccccCCCCCceEEEee
Q 046394          156 LAFHP-NGHLMATSG--KDCKIKIWDLRKYEVLQTL--PGHAKTLDFSRKDS------------GDFSGSHNYNRYMGYS  218 (378)
Q Consensus       156 ~~~sp-~g~~l~t~~--~d~~i~iwd~~~~~~~~~~--~~~i~~~~~sp~g~------------~~~~~~~~~~~~~~~~  218 (378)
                      ++|+| ...+||+|+  .|++|++||..++..+..+  ...|++|.|++..+            ..+|...+..++..+.
T Consensus       349 ~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~  428 (484)
T KOG0305|consen  349 LAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELL  428 (484)
T ss_pred             eeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeec
Confidence            99999 667888876  6999999999999999999  68999999999774            3677777777888888


Q ss_pred             ccCCcceeeeEEcCCCCeEEEecCCCeEEEEEcCCCCcccccccCC
Q 046394          219 MVKGYQIGKVSFRPYEDVLGIGHSMGVSGILIPGSGEPNFDSWVAN  264 (378)
Q Consensus       219 ~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~~~s~d~~i~~w~~~  264 (378)
                      + |..+|..++++|||..            +++|++|.++++|+.-
T Consensus       429 g-H~~RVl~la~SPdg~~------------i~t~a~DETlrfw~~f  461 (484)
T KOG0305|consen  429 G-HTSRVLYLALSPDGET------------IVTGAADETLRFWNLF  461 (484)
T ss_pred             C-CcceeEEEEECCCCCE------------EEEecccCcEEecccc
Confidence            8 9999999999999954            5556666677777653

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.96  E-value=2.6e-28  Score=219.04  Aligned_cols=236  Identities=19%  Similarity=0.210  Sum_probs=210.5

Q ss_pred             ecCCceeeEEEeccceeeeeecccceeeEEeec-CCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeeccCCCe
Q 046394           11 EAEGVEKTWRIKQEAIAREVDILSSRNQYDIML-PELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKEHGEV   88 (378)
Q Consensus        11 ~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~l~~-~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~   88 (378)
                      ..++.+..+.......+++|++.+++.+..++. |..+|..++|+|.|..+++|+.||.|+||| ..+.+.+.|++|.++
T Consensus        70 l~~d~~~L~~a~rs~llrv~~L~tgk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGv  149 (775)
T KOG0319|consen   70 LTPDEEVLVTASRSQLLRVWSLPTGKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGV  149 (775)
T ss_pred             ecCCccEEEEeeccceEEEEEcccchHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCce
Confidence            344467788888899999999999999999998 999999999999999999999999999999 566788999999998


Q ss_pred             -eEEEE-------EEEEEeCCCeEEEEEcCCCcE-EEEEecCCCCeeEEEEcCCCCEEEEEcCCCe--------------
Q 046394           89 -LKLQF-------LLASINKLGQLRYQNVTMGEI-VGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT--------------  145 (378)
Q Consensus        89 -~~l~~-------~l~s~~~d~~i~iwd~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~--------------  145 (378)
                       .++.|       +|++|..|+++++||+.+... +..+..|.+.|++++|++|+..+++++.|..              
T Consensus       150 Vssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~  229 (775)
T KOG0319|consen  150 VSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKT  229 (775)
T ss_pred             EEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhhe
Confidence             88999       789999999999999986554 7777889999999999999988888888876              


Q ss_pred             --------------------------------------------------------------------------------
Q 046394          146 --------------------------------------------------------------------------------  145 (378)
Q Consensus       146 --------------------------------------------------------------------------------  145 (378)
                                                                                                      
T Consensus       230 lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d  309 (775)
T KOG0319|consen  230 LPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYD  309 (775)
T ss_pred             echhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEE
Confidence                                                                                            


Q ss_pred             --------------------------------------------------------------------------------
Q 046394          146 --------------------------------------------------------------------------------  145 (378)
Q Consensus       146 --------------------------------------------------------------------------------  145 (378)
                                                                                                      
T Consensus       310 ~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~sv  389 (775)
T KOG0319|consen  310 EDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSV  389 (775)
T ss_pred             ccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceE
Confidence                                                                                            


Q ss_pred             ---------------------------------------------------------------------eeecCCCEEEE
Q 046394          146 ---------------------------------------------------------------------MLCHQGPVSAL  156 (378)
Q Consensus       146 ---------------------------------------------------------------------~~~h~~~v~~~  156 (378)
                                                                                           ...|...|+++
T Consensus       390 ilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~V  469 (775)
T KOG0319|consen  390 ILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCV  469 (775)
T ss_pred             EEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccce
Confidence                                                                                 34577889999


Q ss_pred             EEecCCCEEEEEECCCeEEEEEcCCceeeeee--c-CCceEEEEecCCC----------ccccCCCCCceEEEeeccCCc
Q 046394          157 AFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL--P-GHAKTLDFSRKDS----------GDFSGSHNYNRYMGYSMVKGY  223 (378)
Q Consensus       157 ~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~--~-~~i~~~~~sp~g~----------~~~~~~~~~~~~~~~~~~~~~  223 (378)
                      +++|+..++||||.|.+.+||++..+..+.++  | ..+.++.|+|..+          ..+|...+..++.++.| |..
T Consensus       470 aia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eG-H~~  548 (775)
T KOG0319|consen  470 AIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEG-HTS  548 (775)
T ss_pred             EecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecC-ccc
Confidence            99999999999999999999999988888888  3 7899999998644          48899999999999999 999


Q ss_pred             ceeeeEEcCCCCeEEEecCCCeEE
Q 046394          224 QIGKVSFRPYEDVLGIGHSMGVSG  247 (378)
Q Consensus       224 ~v~~~~~sp~g~~l~~~~~~g~~~  247 (378)
                      .|..+.|-.+|..|++++.||.+.
T Consensus       549 aVlra~F~~~~~qliS~~adGliK  572 (775)
T KOG0319|consen  549 AVLRASFIRNGKQLISAGADGLIK  572 (775)
T ss_pred             eeEeeeeeeCCcEEEeccCCCcEE
Confidence            999999999999999999999766

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=99.96  E-value=1.8e-28  Score=221.91  Aligned_cols=176  Identities=26%  Similarity=0.322  Sum_probs=161.0

Q ss_pred             eecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeC-CCCeEEeeccCCCe-eEEEE-----EEEEEeCCC
Q 046394           30 VDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNR-DGTELHCSKEHGEV-LKLQF-----LLASINKLG  102 (378)
Q Consensus        30 ~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~-~~l~~-----~l~s~~~d~  102 (378)
                      .|.........+.+|.++|+++.|+|+.++|++++.|++|++|.+ +...+..+++|..+ .++.|     +|||+|.|+
T Consensus       436 ~D~~~~~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~  515 (707)
T KOG0263|consen  436 LDDDSSGTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQ  515 (707)
T ss_pred             ccccCCceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCc
Confidence            333444455678999999999999999999999999999999994 55677888999987 99999     999999999


Q ss_pred             eEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe--------------eeecCCCEEEEEEecCCCEEEEE
Q 046394          103 QLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT--------------MLCHQGPVSALAFHPNGHLMATS  168 (378)
Q Consensus       103 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~--------------~~~h~~~v~~~~~sp~g~~l~t~  168 (378)
                      +.++|....-.+.+.+.+|.+.|.|+.|+|++.++++|+.|.+              +.||.++|++++|||+|++|++|
T Consensus       516 tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg  595 (707)
T KOG0263|consen  516 TARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASG  595 (707)
T ss_pred             eeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeec
Confidence            9999999999999999999999999999999999999999988              88999999999999999999999


Q ss_pred             ECCCeEEEEEcCCceeeeee--c-CCceEEEEecCCCccc
Q 046394          169 GKDCKIKIWDLRKYEVLQTL--P-GHAKTLDFSRKDSGDF  205 (378)
Q Consensus       169 ~~d~~i~iwd~~~~~~~~~~--~-~~i~~~~~sp~g~~~~  205 (378)
                      +.||.|.|||+.++.++..+  | +.+.++.||.||...+
T Consensus       596 ~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLa  635 (707)
T KOG0263|consen  596 DEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLA  635 (707)
T ss_pred             ccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEE
Confidence            99999999999999999888  4 7899999999998633

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.96  E-value=3.1e-27  Score=212.46  Aligned_cols=248  Identities=12%  Similarity=0.163  Sum_probs=208.0

Q ss_pred             eEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeeccCCCe-eEEEE--
Q 046394           18 TWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKEHGEV-LKLQF--   93 (378)
Q Consensus        18 ~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~-~~l~~--   93 (378)
                      ......||.|++|+..+......+.+|..+|+++.|+..|..||+||.|+.|.+|| +...-+..+.+|.+. +.+-|  
T Consensus        80 lAVGYaDGsVqif~~~s~~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~  159 (888)
T KOG0306|consen   80 LAVGYADGSVQIFSLESEEILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLN  159 (888)
T ss_pred             EEEEecCceEEeeccCCCceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccC
Confidence            34556699999999999999999999999999999999999999999999999999 455567889999986 77777  


Q ss_pred             ---EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe-------------------------
Q 046394           94 ---LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT-------------------------  145 (378)
Q Consensus        94 ---~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~-------------------------  145 (378)
                         ++++++.|+.|++||+.+..|..+...|.+.++.+++.+  +.+++++.++.                         
T Consensus       160 ~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~--~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G  237 (888)
T KOG0306|consen  160 GDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDE--KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRG  237 (888)
T ss_pred             CCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEec--ceEEEEecCCceEEEEeecccccccccccceeeccc
Confidence               899999999999999999999999999999999999988  55555544443                         


Q ss_pred             --------------------------------------------------------------------------------
Q 046394          146 --------------------------------------------------------------------------------  145 (378)
Q Consensus       146 --------------------------------------------------------------------------------  145 (378)
                                                                                                      
T Consensus       238 ~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~i  317 (888)
T KOG0306|consen  238 TFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETI  317 (888)
T ss_pred             eeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHhe
Confidence                                                                                            


Q ss_pred             --------------------------------------------------------------------------------
Q 046394          146 --------------------------------------------------------------------------------  145 (378)
Q Consensus       146 --------------------------------------------------------------------------------  145 (378)
                                                                                                      
T Consensus       318 r~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~~Sik  397 (888)
T KOG0306|consen  318 RTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAGESIK  397 (888)
T ss_pred             echhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecCCCcEE
Confidence                                                                                            


Q ss_pred             ----------------------------------------------------eeecCCCEEEEEEecCCCEEEEEECCCe
Q 046394          146 ----------------------------------------------------MLCHQGPVSALAFHPNGHLMATSGKDCK  173 (378)
Q Consensus       146 ----------------------------------------------------~~~h~~~v~~~~~sp~g~~l~t~~~d~~  173 (378)
                                                                          ..+|.+.|.+++.+||+..++|||.|.+
T Consensus       398 iWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDkt  477 (888)
T KOG0306|consen  398 IWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKT  477 (888)
T ss_pred             EEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcE
Confidence                                                                6689999999999999999999999999


Q ss_pred             EEEEEcCC-----cee---e-----eee--cCCceEEEEecCCCc----------cccCCCCCceEEEeeccCCcceeee
Q 046394          174 IKIWDLRK-----YEV---L-----QTL--PGHAKTLDFSRKDSG----------DFSGSHNYNRYMGYSMVKGYQIGKV  228 (378)
Q Consensus       174 i~iwd~~~-----~~~---~-----~~~--~~~i~~~~~sp~g~~----------~~~~~~~~~~~~~~~~~~~~~v~~~  228 (378)
                      |++||..-     |..   +     +++  ...+.|+.+||||++          .++-..+...+..+.| |.-||.++
T Consensus       478 VkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYG-HkLPV~sm  556 (888)
T KOG0306|consen  478 VKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYG-HKLPVLSM  556 (888)
T ss_pred             EEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecc-cccceeEE
Confidence            99999742     111   1     222  578999999999997          3334456666677778 99999999


Q ss_pred             EEcCCCCeEEEecCCCeEE------------------------------EEEcCCCCcccccccCCCccc
Q 046394          229 SFRPYEDVLGIGHSMGVSG------------------------------ILIPGSGEPNFDSWVANPFET  268 (378)
Q Consensus       229 ~~sp~g~~l~~~~~~g~~~------------------------------~~~~~s~d~~i~~w~~~~~~~  268 (378)
                      ..|||+..+++|+.|..+.                              ++.+.+.|+.++-||...|+.
T Consensus       557 DIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~  626 (888)
T KOG0306|consen  557 DISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEE  626 (888)
T ss_pred             eccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhh
Confidence            9999999999999988554                              456788899999998766643

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=99.96  E-value=1.3e-26  Score=183.07  Aligned_cols=205  Identities=15%  Similarity=0.172  Sum_probs=168.5

Q ss_pred             ceeeeeecccce--eeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEeeccCCC-eeEEEE-----EEE
Q 046394           25 AIAREVDILSSR--NQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTELHCSKEHGE-VLKLQF-----LLA   96 (378)
Q Consensus        25 ~~i~~~d~~~~~--~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~l~~-----~l~   96 (378)
                      .-|++||+.++.  ++.++.+|...|.++.|..+|+++++||.||+++|||+..........|.. ++++..     .|+
T Consensus        61 qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLi  140 (311)
T KOG0315|consen   61 QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELI  140 (311)
T ss_pred             CeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEE
Confidence            348899998875  588999999999999999999999999999999999965443333334444 477777     899


Q ss_pred             EEeCCCeEEEEEcCCCcEEEEEec-CCCCeeEEEEcCCCCEEEEEcCCCe--------------------eeecCCCEEE
Q 046394           97 SINKLGQLRYQNVTMGEIVGNFWT-GLGRTDVIRVNPFNGVVSLGHSGGT--------------------MLCHQGPVSA  155 (378)
Q Consensus        97 s~~~d~~i~iwd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~d~~--------------------~~~h~~~v~~  155 (378)
                      +|..+|.|++||+....+...+.. ....+.+++..|||+.++.+...|.                    +..|++.+..
T Consensus       141 s~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~  220 (311)
T KOG0315|consen  141 SGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILR  220 (311)
T ss_pred             eecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEE
Confidence            999999999999998777666544 4468999999999999999988887                    7789999999


Q ss_pred             EEEecCCCEEEEEECCCeEEEEEcCCc-eeeeee---cCCceEEEEecCCCc----------cccCCCCCceEEEeeccC
Q 046394          156 LAFHPNGHLMATSGKDCKIKIWDLRKY-EVLQTL---PGHAKTLDFSRKDSG----------DFSGSHNYNRYMGYSMVK  221 (378)
Q Consensus       156 ~~~sp~g~~l~t~~~d~~i~iwd~~~~-~~~~~~---~~~i~~~~~sp~g~~----------~~~~~~~~~~~~~~~~~~  221 (378)
                      +.+||++++||++|.|.+++||++.+. +.-..+   ...+...+||.||.|          .+|+...++.+..+.+ |
T Consensus       221 C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~g-h  299 (311)
T KOG0315|consen  221 CLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQG-H  299 (311)
T ss_pred             EEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCC-c
Confidence            999999999999999999999999887 333333   357899999999987          6777777787888887 5


Q ss_pred             CcceeeeEE
Q 046394          222 GYQIGKVSF  230 (378)
Q Consensus       222 ~~~v~~~~~  230 (378)
                      ..+..+++.
T Consensus       300 ~K~~vc~~l  308 (311)
T KOG0315|consen  300 HKAAVCVAL  308 (311)
T ss_pred             ccccEEEEe
Confidence            555555544

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.96  E-value=5.7e-27  Score=216.17  Aligned_cols=223  Identities=18%  Similarity=0.233  Sum_probs=189.5

Q ss_pred             eEEEeccceeeeeecccce--eeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeC-C-CCeEEeeccCCCe-eEEE
Q 046394           18 TWRIKQEAIAREVDILSSR--NQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNR-D-GTELHCSKEHGEV-LKLQ   92 (378)
Q Consensus        18 ~~~~~~~~~i~~~d~~~~~--~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~-~-~~~~~~~~~~~~~-~~l~   92 (378)
                      ....+.++.+++|+..+..  ....+.+|...|++++|+|+|.++++|+.|++|+|||. . +..+.++.+|... ++++
T Consensus       174 l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~  253 (456)
T KOG0266|consen  174 LAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVA  253 (456)
T ss_pred             EEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEE
Confidence            5556678899999997777  77778899999999999999999999999999999996 4 4688999999986 9999


Q ss_pred             E-----EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe---------e-------eecCC
Q 046394           93 F-----LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT---------M-------LCHQG  151 (378)
Q Consensus        93 ~-----~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~---------~-------~~h~~  151 (378)
                      |     ++++|+.|++|+|||+++++++..+..|.+.|++++|++++.+|++++.|+.         .       .++..
T Consensus       254 f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~  333 (456)
T KOG0266|consen  254 FSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAEN  333 (456)
T ss_pred             ecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCC
Confidence            9     9999999999999999999999999999999999999999999999999888         1       22333


Q ss_pred             --CEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee--c-C---CceEEEEecCCC----------ccccCCCCCce
Q 046394          152 --PVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL--P-G---HAKTLDFSRKDS----------GDFSGSHNYNR  213 (378)
Q Consensus       152 --~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~--~-~---~i~~~~~sp~g~----------~~~~~~~~~~~  213 (378)
                        ++++++|+|++.++++++.|+.+++||+..+.++..+  + .   .+.+...++.|.          ..+|+..+...
T Consensus       334 ~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~  413 (456)
T KOG0266|consen  334 SAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGI  413 (456)
T ss_pred             CCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccch
Confidence              4899999999999999999999999999998887777  2 1   222223344443          47888888888


Q ss_pred             EEEeeccC-CcceeeeEEcCCCCeEEEec
Q 046394          214 YMGYSMVK-GYQIGKVSFRPYEDVLGIGH  241 (378)
Q Consensus       214 ~~~~~~~~-~~~v~~~~~sp~g~~l~~~~  241 (378)
                      +..+.+ | ...+..+.|+|...++++++
T Consensus       414 ~~~l~~-h~~~~~~~~~~~~~~~~~~s~s  441 (456)
T KOG0266|consen  414 LQRLEG-HSKAAVSDLSSHPTENLIASSS  441 (456)
T ss_pred             hhhhcC-CCCCceeccccCCCcCeeeecC
Confidence            888877 7 78899999999997766655

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.96  E-value=6.8e-26  Score=197.26  Aligned_cols=233  Identities=17%  Similarity=0.217  Sum_probs=197.6

Q ss_pred             eeeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCC-CeEEeeccCCCe-eEEEE
Q 046394           16 EKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDG-TELHCSKEHGEV-LKLQF   93 (378)
Q Consensus        16 ~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~-~~l~~   93 (378)
                      ...+....++.+.+|++.++.....+..|...+.++.|+|++++|++++.+|.|++||... ..+..+..|... .++.|
T Consensus        22 ~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~  101 (289)
T cd00200          22 KLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAF  101 (289)
T ss_pred             CEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEE
Confidence            4455556689999999999988888999988999999999999999999999999999554 667778888754 88888


Q ss_pred             -----EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe--------------eeecCCCEE
Q 046394           94 -----LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT--------------MLCHQGPVS  154 (378)
Q Consensus        94 -----~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~--------------~~~h~~~v~  154 (378)
                           ++++++.|+.|.+||+.+++....+..|...+.+++|+|++.++++++.++.              +..|...|.
T Consensus       102 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~  181 (289)
T cd00200         102 SPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVN  181 (289)
T ss_pred             cCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccc
Confidence                 7777777999999999989988888888899999999999999999886665              556778999


Q ss_pred             EEEEecCCCEEEEEECCCeEEEEEcCCceeeeee---cCCceEEEEecCC----------CccccCCCCCceEEEeeccC
Q 046394          155 ALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL---PGHAKTLDFSRKD----------SGDFSGSHNYNRYMGYSMVK  221 (378)
Q Consensus       155 ~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~~sp~g----------~~~~~~~~~~~~~~~~~~~~  221 (378)
                      +++|+|+++.+++++.|+.|++||+++++.+..+   ...+.++.|+|++          ...+|+.....+...+.. |
T Consensus       182 ~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~-~  260 (289)
T cd00200         182 SVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSG-H  260 (289)
T ss_pred             eEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccc-c
Confidence            9999999999999999999999999998888777   3589999999954          446676666666666666 7


Q ss_pred             CcceeeeEEcCCCCeEEEecCCCeEEEE
Q 046394          222 GYQIGKVSFRPYEDVLGIGHSMGVSGIL  249 (378)
Q Consensus       222 ~~~v~~~~~sp~g~~l~~~~~~g~~~~~  249 (378)
                      ...|.++.|+|++.+|++++.+|.+.+|
T Consensus       261 ~~~i~~~~~~~~~~~l~~~~~d~~i~iw  288 (289)
T cd00200         261 TNSVTSLAWSPDGKRLASGSADGTIRIW  288 (289)
T ss_pred             CCcEEEEEECCCCCEEEEecCCCeEEec
Confidence            7889999999999888888887765554

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.96  E-value=2.7e-27  Score=195.99  Aligned_cols=214  Identities=16%  Similarity=0.137  Sum_probs=185.7

Q ss_pred             eeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeeccCCCe-eEEEE-----EEEEEeCCCeEEEEEc
Q 046394           37 NQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKEHGEV-LKLQF-----LLASINKLGQLRYQNV  109 (378)
Q Consensus        37 ~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~-~~l~~-----~l~s~~~d~~i~iwd~  109 (378)
                      ....+.+|.+.|.|+++.|-..++++|+.|++|.||| .+|....++.+|... ..+++     ++.+++.|+.|+.||+
T Consensus       143 l~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDL  222 (460)
T KOG0285|consen  143 LYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDL  222 (460)
T ss_pred             ehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEec
Confidence            3455789999999999999999999999999999999 677778899999886 88888     9999999999999999


Q ss_pred             CCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe--------------eeecCCCEEEEEEecCCCEEEEEECCCeEE
Q 046394          110 TMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT--------------MLCHQGPVSALAFHPNGHLMATSGKDCKIK  175 (378)
Q Consensus       110 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~--------------~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~  175 (378)
                      ...+.++.+.+|...|.|++.+|.-..|++|+.|..              +.+|..+|.++.+.|..-.++|||.|++|+
T Consensus       223 e~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvr  302 (460)
T KOG0285|consen  223 EYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVR  302 (460)
T ss_pred             hhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEE
Confidence            999999999999999999999999999999999988              789999999999999777899999999999


Q ss_pred             EEEcCCceeeeee---cCCceEEEEecCCCc---------cccCCCCCceEEEeeccCCcceeeeEEcCCCCeEEEecCC
Q 046394          176 IWDLRKYEVLQTL---PGHAKTLDFSRKDSG---------DFSGSHNYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSM  243 (378)
Q Consensus       176 iwd~~~~~~~~~~---~~~i~~~~~sp~g~~---------~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~  243 (378)
                      +||++.|+...++   ...+.+++.+|.-..         .-|....+..+..+.+ |..-|+++....|| ++++|+++
T Consensus       303 lWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g~f~~nlsg-h~~iintl~~nsD~-v~~~G~dn  380 (460)
T KOG0285|consen  303 LWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEGEFLQNLSG-HNAIINTLSVNSDG-VLVSGGDN  380 (460)
T ss_pred             EeeeccCceeEeeecccceeeEEecCCchhhhhccCCccceeccCCccchhhcccc-ccceeeeeeeccCc-eEEEcCCc
Confidence            9999999998888   367899999987553         4455555666666666 77888999988775 67777777


Q ss_pred             CeEEEEEcC
Q 046394          244 GVSGILIPG  252 (378)
Q Consensus       244 g~~~~~~~~  252 (378)
                      |.+.+|..-
T Consensus       381 g~~~fwdwk  389 (460)
T KOG0285|consen  381 GSIMFWDWK  389 (460)
T ss_pred             eEEEEEecC
Confidence            766666533

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=3.8e-27  Score=184.70  Aligned_cols=207  Identities=15%  Similarity=0.181  Sum_probs=171.4

Q ss_pred             eeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeeccCCCe-eEEEE-----EEEEEeCCCeEEEEEc
Q 046394           37 NQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKEHGEV-LKLQF-----LLASINKLGQLRYQNV  109 (378)
Q Consensus        37 ~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~-~~l~~-----~l~s~~~d~~i~iwd~  109 (378)
                      ....+.+|.++|..+.|+-||+|.++++.|.+|++|+ ..|..++++.+|... ..++.     .|++|+.|..+.+||+
T Consensus         9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV   88 (307)
T KOG0316|consen    9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDV   88 (307)
T ss_pred             hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEc
Confidence            4567889999999999999999999999999999999 789999999999864 44444     9999999999999999


Q ss_pred             CCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe----------------eeecCCCEEEEEEecCCCEEEEEECCCe
Q 046394          110 TMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT----------------MLCHQGPVSALAFHPNGHLMATSGKDCK  173 (378)
Q Consensus       110 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~----------------~~~h~~~v~~~~~sp~g~~l~t~~~d~~  173 (378)
                      .+|+.++.|.+|.+.|+.++|+.+...+++|+.|..                +......|.++.++  +..+++||.||+
T Consensus        89 ~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGt  166 (307)
T KOG0316|consen   89 NTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGT  166 (307)
T ss_pred             ccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCc
Confidence            999999999999999999999999999999999988                33345667777775  568999999999


Q ss_pred             EEEEEcCCceeeeee-cCCceEEEEecCCCc----------cccCCCCCceEEEeeccCCccee--eeEEcCCCCeEEEe
Q 046394          174 IKIWDLRKYEVLQTL-PGHAKTLDFSRKDSG----------DFSGSHNYNRYMGYSMVKGYQIG--KVSFRPYEDVLGIG  240 (378)
Q Consensus       174 i~iwd~~~~~~~~~~-~~~i~~~~~sp~g~~----------~~~~~~~~~~~~~~~~~~~~~v~--~~~~sp~g~~l~~~  240 (378)
                      ++.||++.|++..-+ ..+|++++||+||..          .+-+..+++++..+.+ |.+.-+  +.+++.....+++|
T Consensus       167 vRtydiR~G~l~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkG-hkn~eykldc~l~qsdthV~sg  245 (307)
T KOG0316|consen  167 VRTYDIRKGTLSSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKG-HKNMEYKLDCCLNQSDTHVFSG  245 (307)
T ss_pred             EEEEEeecceeehhhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcc-cccceeeeeeeecccceeEEec
Confidence            999999999998777 899999999999985          4455667777777777 554433  44555555444444


Q ss_pred             cCCCeE
Q 046394          241 HSMGVS  246 (378)
Q Consensus       241 ~~~g~~  246 (378)
                      +.||.+
T Consensus       246 SEDG~V  251 (307)
T KOG0316|consen  246 SEDGKV  251 (307)
T ss_pred             cCCceE
Confidence            444433

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=2.9e-28  Score=202.00  Aligned_cols=233  Identities=15%  Similarity=0.146  Sum_probs=184.8

Q ss_pred             eeeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEeeccCCCeeEEEE--
Q 046394           16 EKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTELHCSKEHGEVLKLQF--   93 (378)
Q Consensus        16 ~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~l~~--   93 (378)
                      ...++.+.||.|++||+....+...+..|.+.|..|+++.  ..+++++.|.+|+.|..++.+++++.+......+.-  
T Consensus        80 s~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~p~~tilg~s~~~gIdh~~  157 (433)
T KOG0268|consen   80 STVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGPPLHTILGKSVYLGIDHHR  157 (433)
T ss_pred             hhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccCCcceeeecccccccccccc
Confidence            3456678899999999999999999999999999999987  578899999999999999988888888776544433  


Q ss_pred             ---EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCC-EEEEEcCCCe---eee----------cCCCEEEE
Q 046394           94 ---LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNG-VVSLGHSGGT---MLC----------HQGPVSAL  156 (378)
Q Consensus        94 ---~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~d~~---~~~----------h~~~v~~~  156 (378)
                         .++|||.  .|.|||.....++.++......+.++.|+|-.. +|+++..|+.   +..          -...-+.|
T Consensus       158 ~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~I  235 (433)
T KOG0268|consen  158 KNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTI  235 (433)
T ss_pred             ccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeeccccce
Confidence               8888885  499999999999999999999999999999874 6777767777   111          11234678


Q ss_pred             EEecCCCEEEEEECCCeEEEEEcCCce-eeeee--c-CCceEEEEecCCCccccCCCCC-------------ceEEEeec
Q 046394          157 AFHPNGHLMATSGKDCKIKIWDLRKYE-VLQTL--P-GHAKTLDFSRKDSGDFSGSHNY-------------NRYMGYSM  219 (378)
Q Consensus       157 ~~sp~g~~l~t~~~d~~i~iwd~~~~~-~~~~~--~-~~i~~~~~sp~g~~~~~~~~~~-------------~~~~~~~~  219 (378)
                      +|+|++-.|++++.|..++.||++... ++..+  | +.+.++.|||.|.-.+..+.+.             ..|.+-. 
T Consensus       236 swnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkR-  314 (433)
T KOG0268|consen  236 CWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKR-  314 (433)
T ss_pred             ecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhh-
Confidence            999988889999999999999999844 46666  3 6789999999998655443322             2222221 


Q ss_pred             cCCcceeeeEEcCCCCeEEEecCCCeEEEEEcCCCCcccccccCCCcc
Q 046394          220 VKGYQIGKVSFRPYEDVLGIGHSMGVSGILIPGSGEPNFDSWVANPFE  267 (378)
Q Consensus       220 ~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~~~s~d~~i~~w~~~~~~  267 (378)
                        -+.|.+|.||.|.            .++++||+|+++++|..+..+
T Consensus       315 --Mq~V~~Vk~S~Ds------------kyi~SGSdd~nvRlWka~Ase  348 (433)
T KOG0268|consen  315 --MQHVFCVKYSMDS------------KYIISGSDDGNVRLWKAKASE  348 (433)
T ss_pred             --hheeeEEEEeccc------------cEEEecCCCcceeeeecchhh
Confidence              2568999999999            667778888899999876654

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.95  E-value=9.4e-27  Score=185.70  Aligned_cols=234  Identities=15%  Similarity=0.107  Sum_probs=194.9

Q ss_pred             eeeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeeccCCCeeEEEE-
Q 046394           16 EKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKEHGEVLKLQF-   93 (378)
Q Consensus        16 ~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~~~l~~-   93 (378)
                      |-.++..-|.+..+|=..+|+.+-++.+|++.|+|++.+.+.+++++|+.|.++++|| .+|+++..+.....+..+.| 
T Consensus        23 DLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~  102 (327)
T KOG0643|consen   23 DLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNSPVKRVDFS  102 (327)
T ss_pred             cEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCCeeEEEeec
Confidence            4455555567777777889999999999999999999999999999999999999999 78899999988877777778 


Q ss_pred             ----EEEEE-----eCCCeEEEEEcC-------CCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe------------
Q 046394           94 ----LLASI-----NKLGQLRYQNVT-------MGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT------------  145 (378)
Q Consensus        94 ----~l~s~-----~~d~~i~iwd~~-------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~------------  145 (378)
                          +++.+     +..+.|.++|++       ...++..+..+...++.+-|.|-+..|++|..+|.            
T Consensus       103 ~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~  182 (327)
T KOG0643|consen  103 FGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKEL  182 (327)
T ss_pred             cCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCcee
Confidence                33333     234789999998       34568888888899999999999999999999998            


Q ss_pred             ---eeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee--cCCceEEEEecCCCccc---------------
Q 046394          146 ---MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL--PGHAKTLDFSRKDSGDF---------------  205 (378)
Q Consensus       146 ---~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~--~~~i~~~~~sp~g~~~~---------------  205 (378)
                         ...|...|+.|+++|+..+++|+|.|.+-++||+++.+++.++  ..++++.+++|--.+.+               
T Consensus       183 v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~  262 (327)
T KOG0643|consen  183 VDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTST  262 (327)
T ss_pred             eechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecc
Confidence               3458889999999999999999999999999999999999999  68999999999544311               


Q ss_pred             ---------cCCCCCceEEEeeccCCcceeeeEEcCCCCeEEEecCCCeEEEEE
Q 046394          206 ---------SGSHNYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILI  250 (378)
Q Consensus       206 ---------~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~  250 (378)
                               +..-..+.+...++ |-.||++|+|+|+|...++|+.||.+++..
T Consensus       263 r~GKFEArFyh~i~eEEigrvkG-HFGPINsvAfhPdGksYsSGGEDG~VR~h~  315 (327)
T KOG0643|consen  263 RAGKFEARFYHLIFEEEIGRVKG-HFGPINSVAFHPDGKSYSSGGEDGYVRLHH  315 (327)
T ss_pred             cccchhhhHHHHHHHHHhccccc-cccCcceeEECCCCcccccCCCCceEEEEE
Confidence                     11111223455667 889999999999999999999999887764

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=3.2e-26  Score=183.05  Aligned_cols=230  Identities=15%  Similarity=0.179  Sum_probs=172.1

Q ss_pred             eeecCCceeeEEEeccceeeeeeccc---ceeeEEe-ecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeC---CCCeEEe
Q 046394            9 YLEAEGVEKTWRIKQEAIAREVDILS---SRNQYDI-MLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNR---DGTELHC   81 (378)
Q Consensus         9 ~l~~~~~~~~~~~~~~~~i~~~d~~~---~~~~~~l-~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~---~~~~~~~   81 (378)
                      .|+++|.++++++        |+...   -.+...+ .+|...|.+++|+|.|++||+||.|.++.||..   +-.++..
T Consensus        29 ilAscg~Dk~vri--------w~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~  100 (312)
T KOG0645|consen   29 ILASCGTDKAVRI--------WSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVAT  100 (312)
T ss_pred             EEEeecCCceEEE--------EecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEee
Confidence            3555555555554        44543   2233333 368899999999999999999999999999983   2356788


Q ss_pred             eccCCCe-eEEEE-----EEEEEeCCCeEEEEEcCCC---cEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe-------
Q 046394           82 SKEHGEV-LKLQF-----LLASINKLGQLRYQNVTMG---EIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT-------  145 (378)
Q Consensus        82 ~~~~~~~-~~l~~-----~l~s~~~d~~i~iwd~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~-------  145 (378)
                      +.+|..- -+++|     +||+|+.|..|-||.+..+   .+...+..|...|..+.|+|...+|++++.|.+       
T Consensus       101 lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~  180 (312)
T KOG0645|consen  101 LEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDE  180 (312)
T ss_pred             eeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeec
Confidence            9999865 99999     9999999999999998743   578888999999999999999999999999988       


Q ss_pred             ----------eeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee-cCCceEEEEecCCC---------ccc
Q 046394          146 ----------MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL-PGHAKTLDFSRKDS---------GDF  205 (378)
Q Consensus       146 ----------~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~-~~~i~~~~~sp~g~---------~~~  205 (378)
                                +.+|...|.+++|+|.|..|++++.|++|+||-+.+.  +..+ ...+..+.|. +|.         +.+
T Consensus       181 ~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~--~~~~~sr~~Y~v~W~-~~~IaS~ggD~~i~l  257 (312)
T KOG0645|consen  181 DDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD--LSGMHSRALYDVPWD-NGVIASGGGDDAIRL  257 (312)
T ss_pred             CCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccC--cchhcccceEeeeec-ccceEeccCCCEEEE
Confidence                      7789999999999999999999999999999986521  1111 2456666666 333         222


Q ss_pred             cCC------CCCceEEEeeccCCcceeeeEEcCC-CCeEEEecCCCeEEEE
Q 046394          206 SGS------HNYNRYMGYSMVKGYQIGKVSFRPY-EDVLGIGHSMGVSGIL  249 (378)
Q Consensus       206 ~~~------~~~~~~~~~~~~~~~~v~~~~~sp~-g~~l~~~~~~g~~~~~  249 (378)
                      +..      .....+......|...|+++.|.|. ...|++|++||.+++|
T Consensus       258 f~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W  308 (312)
T KOG0645|consen  258 FKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFW  308 (312)
T ss_pred             EEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEE
Confidence            211      1112222222237889999999995 4566666666665555

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=1.5e-25  Score=179.19  Aligned_cols=215  Identities=15%  Similarity=0.155  Sum_probs=174.1

Q ss_pred             eeeEEeecCCCCceEEEEcCC-CCEEEEEeCCCcEEEEeCCC-C---eEEee-ccCCCe-eEEEE-----EEEEEeCCCe
Q 046394           36 RNQYDIMLPELGPYTLDFTSS-GRYMAAAGCKGYPYFYNRDG-T---ELHCS-KEHGEV-LKLQF-----LLASINKLGQ  103 (378)
Q Consensus        36 ~~~~~l~~~~~~v~~~~~sp~-g~~l~~~~~dg~i~iwd~~~-~---~~~~~-~~~~~~-~~l~~-----~l~s~~~d~~  103 (378)
                      ..++.+.+|.+.+..++|+|- |..||+||.|..|+||+..+ .   +...+ .+|... .+++|     +|++++.|.+
T Consensus         5 ~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t   84 (312)
T KOG0645|consen    5 ILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDAT   84 (312)
T ss_pred             eeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccce
Confidence            346788999999999999998 88999999999999999653 2   22233 356655 99999     9999999999


Q ss_pred             EEEEEcCCC--cEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe-----------------eeecCCCEEEEEEecCCCE
Q 046394          104 LRYQNVTMG--EIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT-----------------MLCHQGPVSALAFHPNGHL  164 (378)
Q Consensus       104 i~iwd~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~-----------------~~~h~~~v~~~~~sp~g~~  164 (378)
                      +.||.-..+  +++.++.+|...|.|++|+++|.+||+++.|..                 +..|...|-.+.|+|...+
T Consensus        85 ~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dl  164 (312)
T KOG0645|consen   85 VVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDL  164 (312)
T ss_pred             EEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcce
Confidence            999986644  689999999999999999999999999999988                 7889999999999998889


Q ss_pred             EEEEECCCeEEEEEcC---Cceeeeee---cCCceEEEEecCCCccccCCCCCce-----EEEeeccCCcceeeeEEcCC
Q 046394          165 MATSGKDCKIKIWDLR---KYEVLQTL---PGHAKTLDFSRKDSGDFSGSHNYNR-----YMGYSMVKGYQIGKVSFRPY  233 (378)
Q Consensus       165 l~t~~~d~~i~iwd~~---~~~~~~~~---~~~i~~~~~sp~g~~~~~~~~~~~~-----~~~~~~~~~~~v~~~~~sp~  233 (378)
                      |+++|.|++|++|.-.   ...+..++   ...+.+++|+|.|...+....+...     +..+...|..+++.+.|.  
T Consensus       165 L~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~~~~~sr~~Y~v~W~--  242 (312)
T KOG0645|consen  165 LFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDLSGMHSRALYDVPWD--  242 (312)
T ss_pred             eEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCcchhcccceEeeeec--
Confidence            9999999999999866   35678888   3589999999999764443333221     122333377789999998  


Q ss_pred             CCeEEEecCCCeEEEEEcC
Q 046394          234 EDVLGIGHSMGVSGILIPG  252 (378)
Q Consensus       234 g~~l~~~~~~g~~~~~~~~  252 (378)
                      ...||+++.|+.+.++...
T Consensus       243 ~~~IaS~ggD~~i~lf~~s  261 (312)
T KOG0645|consen  243 NGVIASGGGDDAIRLFKES  261 (312)
T ss_pred             ccceEeccCCCEEEEEEec
Confidence            4578888888877766543

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.95  E-value=1.7e-26  Score=191.30  Aligned_cols=236  Identities=17%  Similarity=0.146  Sum_probs=197.9

Q ss_pred             ceeeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeC-CCCeEEeeccCCCe-eEEE
Q 046394           15 VEKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNR-DGTELHCSKEHGEV-LKLQ   92 (378)
Q Consensus        15 ~~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~-~~l~   92 (378)
                      .+-+...+.|++++|||+.+++...++.+|-..|..+++|+-..||++++.|+.|+.||+ ..+.++.+.+|-.. .+++
T Consensus       163 n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~  242 (460)
T KOG0285|consen  163 NEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLD  242 (460)
T ss_pred             ceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEe
Confidence            344455667889999999999999999999999999999999999999999999999995 45667888999765 8888


Q ss_pred             E-----EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe--------------eeecCCCE
Q 046394           93 F-----LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT--------------MLCHQGPV  153 (378)
Q Consensus        93 ~-----~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~--------------~~~h~~~v  153 (378)
                      .     .|+||+.|.++++||+++...+..+.+|..+|..+.+.|....+++|+.|++              +..|+..|
T Consensus       243 lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksv  322 (460)
T KOG0285|consen  243 LHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSV  322 (460)
T ss_pred             ccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeeccccee
Confidence            7     8999999999999999999999999999999999999999999999999998              67899999


Q ss_pred             EEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee---cCCceEEEEecCCCc---------cccCCCCCceEEEeec--
Q 046394          154 SALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL---PGHAKTLDFSRKDSG---------DFSGSHNYNRYMGYSM--  219 (378)
Q Consensus       154 ~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~~sp~g~~---------~~~~~~~~~~~~~~~~--  219 (378)
                      .+++.+|....||+++.|. |+-|++..|..+..+   ...+++++...||.+         .+|+..++..++....  
T Consensus       323 ral~lhP~e~~fASas~dn-ik~w~~p~g~f~~nlsgh~~iintl~~nsD~v~~~G~dng~~~fwdwksg~nyQ~~~t~v  401 (460)
T KOG0285|consen  323 RALCLHPKENLFASASPDN-IKQWKLPEGEFLQNLSGHNAIINTLSVNSDGVLVSGGDNGSIMFWDWKSGHNYQRGQTIV  401 (460)
T ss_pred             eEEecCCchhhhhccCCcc-ceeccCCccchhhccccccceeeeeeeccCceEEEcCCceEEEEEecCcCcccccccccc
Confidence            9999999999999999886 899999999998888   367889988888764         5666666655544321  


Q ss_pred             -----cCCcceeeeEEcCCCCeEEEecCCCeEEEEEcCCCCcccccccC
Q 046394          220 -----VKGYQIGKVSFRPYEDVLGIGHSMGVSGILIPGSGEPNFDSWVA  263 (378)
Q Consensus       220 -----~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~~~s~d~~i~~w~~  263 (378)
                           .....|++.+|...|            .-++++..|.+|++|..
T Consensus       402 qpGSl~sEagI~as~fDktg------------~rlit~eadKtIk~~ke  438 (460)
T KOG0285|consen  402 QPGSLESEAGIFASCFDKTG------------SRLITGEADKTIKMYKE  438 (460)
T ss_pred             cCCccccccceeEEeecccC------------ceEEeccCCcceEEEec
Confidence                 112346677777777            45566777777888864

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.95  E-value=1.2e-26  Score=208.35  Aligned_cols=232  Identities=17%  Similarity=0.164  Sum_probs=193.1

Q ss_pred             eeeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCC-----CeEEeeccCCCe-e
Q 046394           16 EKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDG-----TELHCSKEHGEV-L   89 (378)
Q Consensus        16 ~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~-----~~~~~~~~~~~~-~   89 (378)
                      ...+..++...++++++.+..+. .+.+|+..|.+++...+|-+|++|+.|.++++|.++.     .++....+|... .
T Consensus       337 ~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svg  415 (775)
T KOG0319|consen  337 SHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVG  415 (775)
T ss_pred             ceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccc
Confidence            34445567788999998888775 8999999999999777788999999999999997522     234556788875 7


Q ss_pred             EEEE------EEEEEeCCCeEEEEEcCCCc-----EEE----EEecCCCCeeEEEEcCCCCEEEEEcCCCe---------
Q 046394           90 KLQF------LLASINKLGQLRYQNVTMGE-----IVG----NFWTGLGRTDVIRVNPFNGVVSLGHSGGT---------  145 (378)
Q Consensus        90 ~l~~------~l~s~~~d~~i~iwd~~~~~-----~~~----~~~~~~~~v~~~~~s~~~~~l~~~~~d~~---------  145 (378)
                      ++++      +|+++|.|+++++|++...+     ++.    +...|...|+|++++|+..+||+|+.|.+         
T Consensus       416 ava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~  495 (775)
T KOG0319|consen  416 AVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQL  495 (775)
T ss_pred             eeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCc
Confidence            7777      99999999999999997622     111    22357889999999999999999999998         


Q ss_pred             -----eeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee--c-CCceEEEEecCCC----------ccccC
Q 046394          146 -----MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL--P-GHAKTLDFSRKDS----------GDFSG  207 (378)
Q Consensus       146 -----~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~--~-~~i~~~~~sp~g~----------~~~~~  207 (378)
                           +.+|...|.|+.|+|..+.++|+|.|++|+||.+.++.|+.+|  | ..|-.+.|-.+|.          ..+|+
T Consensus       496 ~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWn  575 (775)
T KOG0319|consen  496 RLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWN  575 (775)
T ss_pred             eEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEe
Confidence                 8899999999999999999999999999999999999999999  3 5677777766554          58999


Q ss_pred             CCCCceEEEeeccCCcceeeeEEcCCCCeEEEecCCCeEEEE
Q 046394          208 SHNYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGIL  249 (378)
Q Consensus       208 ~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~  249 (378)
                      ..+..+..++.. |...|++++-+|.+.++++|+.||.+.+|
T Consensus       576 ikt~eC~~tlD~-H~DrvWaL~~~~~~~~~~tgg~Dg~i~~w  616 (775)
T KOG0319|consen  576 IKTNECEMTLDA-HNDRVWALSVSPLLDMFVTGGGDGRIIFW  616 (775)
T ss_pred             ccchhhhhhhhh-ccceeEEEeecCccceeEecCCCeEEEEe
Confidence            999999999999 99999999999999666666555544444

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=2.6e-26  Score=210.02  Aligned_cols=227  Identities=13%  Similarity=0.118  Sum_probs=204.3

Q ss_pred             eccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeeccCCCe-eEEEE-----E
Q 046394           22 KQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKEHGEV-LKLQF-----L   94 (378)
Q Consensus        22 ~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~-~~l~~-----~   94 (378)
                      -..+.|++||..-+..+..+..|+++|.+++|+|++.++++||.|..|+||+ .+.+++.++.+|-+. ..+.|     .
T Consensus        28 lHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPW  107 (1202)
T KOG0292|consen   28 LHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPW  107 (1202)
T ss_pred             ecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCce
Confidence            3478999999999999999999999999999999999999999999999999 567788999999986 77778     9


Q ss_pred             EEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe-----------------------------
Q 046394           95 LASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT-----------------------------  145 (378)
Q Consensus        95 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~-----------------------------  145 (378)
                      ++++|+|.+|+||++.+++++..+.+|...|.|..|+|....+++++-|.+                             
T Consensus       108 IlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~  187 (1202)
T KOG0292|consen  108 ILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGN  187 (1202)
T ss_pred             EEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccc
Confidence            999999999999999999999999999999999999999999999999987                             


Q ss_pred             --------------eeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCcee--eeee--c-CCceEEEEec-------
Q 046394          146 --------------MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEV--LQTL--P-GHAKTLDFSR-------  199 (378)
Q Consensus       146 --------------~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~--~~~~--~-~~i~~~~~sp-------  199 (378)
                                    +.||...|+-++|+|.--+|++|+.|..|++|-+...+.  +.+.  | ..|+++-|+|       
T Consensus       188 ~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlS  267 (1202)
T KOG0292|consen  188 SDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILS  267 (1202)
T ss_pred             hhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEe
Confidence                          678999999999999999999999999999999876544  2233  3 7899999998       


Q ss_pred             ---CCCccccCCCCCceEEEeeccCCcceeeeEEcCCCCeEEEecCCCeEEEE
Q 046394          200 ---KDSGDFSGSHNYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGIL  249 (378)
Q Consensus       200 ---~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~  249 (378)
                         |+.+.+|+......+.+++. ...+-+.++-+|..+++|+|++.|++.+-
T Consensus       268 nsEDksirVwDm~kRt~v~tfrr-endRFW~laahP~lNLfAAgHDsGm~VFk  319 (1202)
T KOG0292|consen  268 NSEDKSIRVWDMTKRTSVQTFRR-ENDRFWILAAHPELNLFAAGHDSGMIVFK  319 (1202)
T ss_pred             cCCCccEEEEecccccceeeeec-cCCeEEEEEecCCcceeeeecCCceEEEE
Confidence               45568999999999999877 66779999999999999999999977543

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.95  E-value=9.1e-26  Score=203.24  Aligned_cols=235  Identities=17%  Similarity=0.171  Sum_probs=195.1

Q ss_pred             eeeEEEeccceeeeeeccc-----------------------cee-----e------EEeecCCCCceEEEEcCCCCEEE
Q 046394           16 EKTWRIKQEAIAREVDILS-----------------------SRN-----Q------YDIMLPELGPYTLDFTSSGRYMA   61 (378)
Q Consensus        16 ~~~~~~~~~~~i~~~d~~~-----------------------~~~-----~------~~l~~~~~~v~~~~~sp~g~~l~   61 (378)
                      ...|.++.||.+.+|....                       ++.     .      +-+......|++.+|++..+.|+
T Consensus       202 ~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lv  281 (893)
T KOG0291|consen  202 LDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLV  281 (893)
T ss_pred             ceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEE
Confidence            3488899999999998761                       111     1      11222235689999999999999


Q ss_pred             EEeCCCcEEEEe-CCCCeEEeeccCCCe-eEEEE-----EEEEEe-CCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCC
Q 046394           62 AAGCKGYPYFYN-RDGTELHCSKEHGEV-LKLQF-----LLASIN-KLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPF  133 (378)
Q Consensus        62 ~~~~dg~i~iwd-~~~~~~~~~~~~~~~-~~l~~-----~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~  133 (378)
                      +|-.+|...+|. .+-..++.+.-.... ..+.|     .+|.|+ .=|.+-||++.+...+....+|...+++++++||
T Consensus       282 vgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpD  361 (893)
T KOG0291|consen  282 VGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPD  361 (893)
T ss_pred             EEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCC
Confidence            999999999999 555677888766544 77888     566554 4589999999999999999999999999999999


Q ss_pred             CCEEEEEcCCCe--------------eeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee--cC--CceEE
Q 046394          134 NGVVSLGHSGGT--------------MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL--PG--HAKTL  195 (378)
Q Consensus       134 ~~~l~~~~~d~~--------------~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~--~~--~i~~~  195 (378)
                      |+++++|+.||.              +..|+..|+.+.|+..|+.++++|-||+|+.||+..++..+++  +.  ...|+
T Consensus       362 gq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~Qfscv  441 (893)
T KOG0291|consen  362 GQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCV  441 (893)
T ss_pred             CcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEE
Confidence            999999999998              7789999999999999999999999999999999999999999  43  45788


Q ss_pred             EEecCCCc-----------cccCCCCCceEEEeeccCCcceeeeEEcCCCCeEEEecCCCeEEEEEcCCCCcccccccC
Q 046394          196 DFSRKDSG-----------DFSGSHNYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILIPGSGEPNFDSWVA  263 (378)
Q Consensus       196 ~~sp~g~~-----------~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~~~s~d~~i~~w~~  263 (378)
                      +..|.|..           .+|+.++++.+-.+.+ |.+||.+++|+|+|..            ++++|.|.+|++|++
T Consensus       442 avD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsG-HEgPVs~l~f~~~~~~------------LaS~SWDkTVRiW~i  507 (893)
T KOG0291|consen  442 AVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSG-HEGPVSGLSFSPDGSL------------LASGSWDKTVRIWDI  507 (893)
T ss_pred             EEcCCCCEEEeeccceEEEEEEEeecCeeeehhcC-CCCcceeeEEccccCe------------EEeccccceEEEEEe
Confidence            88888874           7899999999999999 9999999999999955            455556666666654

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=1.5e-26  Score=211.21  Aligned_cols=219  Identities=14%  Similarity=0.122  Sum_probs=173.7

Q ss_pred             ecccceeeEEee-cCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCC---------------------------------
Q 046394           31 DILSSRNQYDIM-LPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDG---------------------------------   76 (378)
Q Consensus        31 d~~~~~~~~~l~-~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~---------------------------------   76 (378)
                      ++........+. .|.++|++|.||+||+|||+||.||.|+||.+..                                 
T Consensus       252 elsal~~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~  331 (712)
T KOG0283|consen  252 ELSALTVVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEK  331 (712)
T ss_pred             cceeeEEeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccc
Confidence            334444455666 8999999999999999999999999999998311                                 


Q ss_pred             ----------------------------CeEEeeccCCCe-eEEEE----EEEEEeCCCeEEEEEcCCCcEEEEEecCCC
Q 046394           77 ----------------------------TELHCSKEHGEV-LKLQF----LLASINKLGQLRYQNVTMGEIVGNFWTGLG  123 (378)
Q Consensus        77 ----------------------------~~~~~~~~~~~~-~~l~~----~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~  123 (378)
                                                  .+++.+.+|.+- .++.|    +|++++.|.+|++|++....++..|. |.+
T Consensus       332 ~~~~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~-Hnd  410 (712)
T KOG0283|consen  332 ISSRTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFS-HND  410 (712)
T ss_pred             ccccccccccccCCccccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEEe-cCC
Confidence                                        123446778765 89999    99999999999999999999999995 899


Q ss_pred             CeeEEEEcC-CCCEEEEEcCCCe-------------eeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee-
Q 046394          124 RTDVIRVNP-FNGVVSLGHSGGT-------------MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL-  188 (378)
Q Consensus       124 ~v~~~~~s~-~~~~l~~~~~d~~-------------~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~-  188 (378)
                      .|+|++|+| |.++|++|+-|+.             ...-..-|++++|.|||++.+.|+.+|.+++|++...++.... 
T Consensus       411 fVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~  490 (712)
T KOG0283|consen  411 FVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFH  490 (712)
T ss_pred             eeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeee
Confidence            999999999 5689999999998             2223478999999999999999999999999999887765444 


Q ss_pred             ----------cCCceEEEEec-----------CCCccccCCCCCceEEEeeccCC-cceeeeEEcCCCCeEEEecCCCeE
Q 046394          189 ----------PGHAKTLDFSR-----------KDSGDFSGSHNYNRYMGYSMVKG-YQIGKVSFRPYEDVLGIGHSMGVS  246 (378)
Q Consensus       189 ----------~~~i~~~~~sp-----------~g~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~sp~g~~l~~~~~~g~~  246 (378)
                                +..|+.+.|.|           |.++.+++..+..++..+++.+. ..-....|+.||++++++++|..+
T Consensus       491 I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~V  570 (712)
T KOG0283|consen  491 IRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWV  570 (712)
T ss_pred             EeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceE
Confidence                      23588888876           44557777766777766665222 223467899999888877777766


Q ss_pred             EEEE
Q 046394          247 GILI  250 (378)
Q Consensus       247 ~~~~  250 (378)
                      .+|-
T Consensus       571 YiW~  574 (712)
T KOG0283|consen  571 YIWK  574 (712)
T ss_pred             EEEe
Confidence            6664

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=1.4e-26  Score=204.41  Aligned_cols=212  Identities=18%  Similarity=0.146  Sum_probs=187.8

Q ss_pred             eecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeC-CCCeEEeeccCCCe-eEEEE-----EEEEEeCCCeEEEEEcCCCc
Q 046394           41 IMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNR-DGTELHCSKEHGEV-LKLQF-----LLASINKLGQLRYQNVTMGE  113 (378)
Q Consensus        41 l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~-~~l~~-----~l~s~~~d~~i~iwd~~~~~  113 (378)
                      +..++..|.++.|+|...+++++-.+|.|.|||. +...+..+.-..-+ .+..|     .+++|++|..|+||+..++.
T Consensus         9 ~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~e   88 (794)
T KOG0276|consen    9 FQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGE   88 (794)
T ss_pred             hhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccce
Confidence            4457889999999999999999999999999994 55566777666655 66677     89999999999999999999


Q ss_pred             EEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe---------------eeecCCCEEEEEEec-CCCEEEEEECCCeEEEE
Q 046394          114 IVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT---------------MLCHQGPVSALAFHP-NGHLMATSGKDCKIKIW  177 (378)
Q Consensus       114 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~---------------~~~h~~~v~~~~~sp-~g~~l~t~~~d~~i~iw  177 (378)
                      .+..|..|.+.|.+++.+|...+++++++|-.               +.+|...|.+++|+| |.+.||++|-|++|+||
T Consensus        89 kV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVW  168 (794)
T KOG0276|consen   89 KVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVW  168 (794)
T ss_pred             eeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEE
Confidence            99999999999999999999999999999987               889999999999999 77899999999999999


Q ss_pred             EcCCceeeeee--c-CCceEEEEecCCC------------ccccCCCCCceEEEeeccCCcceeeeEEcCCCCeEEEecC
Q 046394          178 DLRKYEVLQTL--P-GHAKTLDFSRKDS------------GDFSGSHNYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHS  242 (378)
Q Consensus       178 d~~~~~~~~~~--~-~~i~~~~~sp~g~------------~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~  242 (378)
                      .+.+..+..++  | ..|+|+.|-+-|.            ..+|+-++..++.++.+ |..-|..+.|+|.=+++++|+.
T Consensus       169 slgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeG-Ht~Nvs~v~fhp~lpiiisgsE  247 (794)
T KOG0276|consen  169 SLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEG-HTNNVSFVFFHPELPIIISGSE  247 (794)
T ss_pred             EcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhc-ccccceEEEecCCCcEEEEecC
Confidence            99999999999  4 7899999988774            27899999999999999 9999999999999977777777


Q ss_pred             CCeEEEEEcCC
Q 046394          243 MGVSGILIPGS  253 (378)
Q Consensus       243 ~g~~~~~~~~s  253 (378)
                      ||.+++|-+.+
T Consensus       248 DGTvriWhs~T  258 (794)
T KOG0276|consen  248 DGTVRIWNSKT  258 (794)
T ss_pred             CccEEEecCcc
Confidence            77666665443

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=1.3e-26  Score=189.24  Aligned_cols=223  Identities=16%  Similarity=0.123  Sum_probs=165.7

Q ss_pred             EEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCC-------------------------------------CeEEe
Q 046394           39 YDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDG-------------------------------------TELHC   81 (378)
Q Consensus        39 ~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~-------------------------------------~~~~~   81 (378)
                      ..|++|...|++++||.||.+||+++.|+.|+||+...                                     ..+..
T Consensus        80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~v  159 (420)
T KOG2096|consen   80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCV  159 (420)
T ss_pred             hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEE
Confidence            45789999999999999999999999999999999421                                     11111


Q ss_pred             ecc---------CCC-------------eeEEEE-------EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcC
Q 046394           82 SKE---------HGE-------------VLKLQF-------LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNP  132 (378)
Q Consensus        82 ~~~---------~~~-------------~~~l~~-------~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~  132 (378)
                      +..         |..             +.-+.+       ++++++.|..|.+|++. |+.+.++......-+..+.||
T Consensus       160 yk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP  238 (420)
T KOG2096|consen  160 YKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSP  238 (420)
T ss_pred             EEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCC
Confidence            100         000             000111       89999999999999997 999999988777888899999


Q ss_pred             CCCEEEEEcCCCe----------------------eeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCC----c---e
Q 046394          133 FNGVVSLGHSGGT----------------------MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRK----Y---E  183 (378)
Q Consensus       133 ~~~~l~~~~~d~~----------------------~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~----~---~  183 (378)
                      +|+++++++-.-.                      +.+|...|+.++|||+...++|.|.||+++|||+.-    +   .
T Consensus       239 ~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk  318 (420)
T KOG2096|consen  239 DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPK  318 (420)
T ss_pred             CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCch
Confidence            9999998765333                      889999999999999999999999999999999852    1   1


Q ss_pred             eeeee-------cCCceEEEEecCCCc---------cccCCCCCceEEEeeccCCcceeeeEEcCCCCeEEEecCCCeEE
Q 046394          184 VLQTL-------PGHAKTLDFSRKDSG---------DFSGSHNYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSG  247 (378)
Q Consensus       184 ~~~~~-------~~~i~~~~~sp~g~~---------~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~  247 (378)
                      .+.+.       .+....+.+||.|..         .++..+++..+..+...|+..|.+++|+|+|++++++++.-...
T Consensus       319 ~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcGdr~vrv  398 (420)
T KOG2096|consen  319 ILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCGDRYVRV  398 (420)
T ss_pred             HhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeecceeeee
Confidence            22222       344568999999985         33344445555444445888999999999999999998775432


Q ss_pred             EEEcCCCCccccccc
Q 046394          248 ILIPGSGEPNFDSWV  262 (378)
Q Consensus       248 ~~~~~s~d~~i~~w~  262 (378)
                      +--+-+.+..+..|+
T Consensus       399 ~~ntpg~~~~V~~~~  413 (420)
T KOG2096|consen  399 IRNTPGWHSRVVKLN  413 (420)
T ss_pred             ecCCCchhhHHHHhh
Confidence            222444555566664

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=4.8e-27  Score=194.84  Aligned_cols=212  Identities=9%  Similarity=0.074  Sum_probs=187.8

Q ss_pred             eeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeeccCCCe-eEEEE-----EEEEEeCCCeEEEEEc
Q 046394           37 NQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKEHGEV-LKLQF-----LLASINKLGQLRYQNV  109 (378)
Q Consensus        37 ~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~-~~l~~-----~l~s~~~d~~i~iwd~  109 (378)
                      ..+.+.+|...|+.+-|+|+-..+++++.|++|++|| .+|+....+++|... .++.|     ++++++.|-.+.+||.
T Consensus       100 l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~  179 (406)
T KOG0295|consen  100 LVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDF  179 (406)
T ss_pred             chhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeH
Confidence            3456778889999999999999999999999999999 788888999999986 99999     9999999999999999


Q ss_pred             CC-CcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe--------------eeecCCCEEEEEEecCCCEEEEEECCCeE
Q 046394          110 TM-GEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT--------------MLCHQGPVSALAFHPNGHLMATSGKDCKI  174 (378)
Q Consensus       110 ~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~--------------~~~h~~~v~~~~~sp~g~~l~t~~~d~~i  174 (378)
                      .+ .+++....+|...|.+++|-|.|.+|++++.|..              +.+|...|..++.+.||.++++++.|.+|
T Consensus       180 ~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl  259 (406)
T KOG0295|consen  180 DTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTL  259 (406)
T ss_pred             HHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceE
Confidence            87 5677888899999999999999999999999998              78899999999999999999999999999


Q ss_pred             EEEEcCCceeeeee---cCCceEEEEecCC-------------------------CccccCCCCCceEEEeeccCCccee
Q 046394          175 KIWDLRKYEVLQTL---PGHAKTLDFSRKD-------------------------SGDFSGSHNYNRYMGYSMVKGYQIG  226 (378)
Q Consensus       175 ~iwd~~~~~~~~~~---~~~i~~~~~sp~g-------------------------~~~~~~~~~~~~~~~~~~~~~~~v~  226 (378)
                      ++|-+.++++...+   ..++-+++|-|..                         .+.+|+..++.++.++.+ |.+.|.
T Consensus       260 ~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~g-hdnwVr  338 (406)
T KOG0295|consen  260 RVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVG-HDNWVR  338 (406)
T ss_pred             EEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEec-ccceee
Confidence            99999998776666   3677788876632                         248899999999999999 999999


Q ss_pred             eeEEcCCCCeEEEecCCCeEEEE
Q 046394          227 KVSFRPYEDVLGIGHSMGVSGIL  249 (378)
Q Consensus       227 ~~~~sp~g~~l~~~~~~g~~~~~  249 (378)
                      .++|+|.|+||+++.+|+.+++|
T Consensus       339 ~~af~p~Gkyi~ScaDDktlrvw  361 (406)
T KOG0295|consen  339 GVAFSPGGKYILSCADDKTLRVW  361 (406)
T ss_pred             eeEEcCCCeEEEEEecCCcEEEE
Confidence            99999999888877777755544

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.95  E-value=5.6e-26  Score=204.47  Aligned_cols=227  Identities=12%  Similarity=0.179  Sum_probs=193.5

Q ss_pred             cceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeeccCCCe-eEEEE-----EEE
Q 046394           24 EAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKEHGEV-LKLQF-----LLA   96 (378)
Q Consensus        24 ~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~-~~l~~-----~l~   96 (378)
                      .+.+.+|+..+.+++.++...  -+.+..|.|.++++++|...|.+.+|| .+...+.++++|.+. .+++.     .++
T Consensus       393 ~~SikiWn~~t~kciRTi~~~--y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~v  470 (888)
T KOG0306|consen  393 GESIKIWNRDTLKCIRTITCG--YILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFV  470 (888)
T ss_pred             CCcEEEEEccCcceeEEeccc--cEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceE
Confidence            478999999999999999874  788999999999999999999999999 566777888899987 88888     999


Q ss_pred             EEeCCCeEEEEEcCC-----CcE--EEEEe-----cCCCCeeEEEEcCCCCEEEEEcCCCe--------------eeecC
Q 046394           97 SINKLGQLRYQNVTM-----GEI--VGNFW-----TGLGRTDVIRVNPFNGVVSLGHSGGT--------------MLCHQ  150 (378)
Q Consensus        97 s~~~d~~i~iwd~~~-----~~~--~~~~~-----~~~~~v~~~~~s~~~~~l~~~~~d~~--------------~~~h~  150 (378)
                      |||.|.+|++||..-     |..  +..+.     .-...|.|+.+||||.+|+++--|.+              +.||.
T Consensus       471 T~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHk  550 (888)
T KOG0306|consen  471 TGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHK  550 (888)
T ss_pred             EecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccc
Confidence            999999999999742     111  11111     13478999999999999999999988              78999


Q ss_pred             CCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee--c-CCceEEEEecCC----------CccccCCCCCceEEEe
Q 046394          151 GPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL--P-GHAKTLDFSRKD----------SGDFSGSHNYNRYMGY  217 (378)
Q Consensus       151 ~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~--~-~~i~~~~~sp~g----------~~~~~~~~~~~~~~~~  217 (378)
                      -||.||.+|||++.++|||.|.+|+||-+.-|.|-.++  | ..|.++.|-|+.          ...-|+......+..+
T Consensus       551 LPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L  630 (888)
T KOG0306|consen  551 LPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKL  630 (888)
T ss_pred             cceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheee
Confidence            99999999999999999999999999999999999888  4 788999998843          3467777778888888


Q ss_pred             eccCCcceeeeEEcCCCCeEEEecCCCeEEEEEcCCCCcccccccCCC
Q 046394          218 SMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILIPGSGEPNFDSWVANP  265 (378)
Q Consensus       218 ~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~~~s~d~~i~~w~~~~  265 (378)
                      .+ |...|++++.+|+|            .+++++|.|.+||+|+...
T Consensus       631 ~~-H~~ev~cLav~~~G------------~~vvs~shD~sIRlwE~td  665 (888)
T KOG0306|consen  631 DG-HHSEVWCLAVSPNG------------SFVVSSSHDKSIRLWERTD  665 (888)
T ss_pred             cc-chheeeeeEEcCCC------------CeEEeccCCceeEeeeccC
Confidence            88 88889999999999            5566777777888887543

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.95  E-value=8.6e-27  Score=200.00  Aligned_cols=212  Identities=17%  Similarity=0.226  Sum_probs=174.3

Q ss_pred             eeeEEeecCCCCceEEEEcC-CCCEEEEEeCCCcEEEEe--CCCCeEEeeccCCCe-eEEEE-----EEEEEeCCCeEEE
Q 046394           36 RNQYDIMLPELGPYTLDFTS-SGRYMAAAGCKGYPYFYN--RDGTELHCSKEHGEV-LKLQF-----LLASINKLGQLRY  106 (378)
Q Consensus        36 ~~~~~l~~~~~~v~~~~~sp-~g~~l~~~~~dg~i~iwd--~~~~~~~~~~~~~~~-~~l~~-----~l~s~~~d~~i~i  106 (378)
                      +.++++.+|+.+|+++.|.| .+.+|++|+.|+.|+||+  -++.+++++.+|..+ .+++|     .|+++|.|+.|++
T Consensus       205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKl  284 (503)
T KOG0282|consen  205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKL  284 (503)
T ss_pred             hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeee
Confidence            56788999999999999999 889999999999999999  358999999999987 99999     9999999999999


Q ss_pred             EEcCCCcEEEEEecCCCCeeEEEEcCCC-CEEEEEcCCCe--------------eeecCCCEEEEEEecCCCEEEEEECC
Q 046394          107 QNVTMGEIVGNFWTGLGRTDVIRVNPFN-GVVSLGHSGGT--------------MLCHQGPVSALAFHPNGHLMATSGKD  171 (378)
Q Consensus       107 wd~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~d~~--------------~~~h~~~v~~~~~sp~g~~l~t~~~d  171 (378)
                      ||+++|+++..|.. ...++|+.|+|++ +.|++|+.|+.              +..|-+.|..+.|-++|.++++++.|
T Consensus       285 wDtETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDd  363 (503)
T KOG0282|consen  285 WDTETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDD  363 (503)
T ss_pred             eccccceEEEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccC
Confidence            99999999999864 4678999999999 78999999887              56788999999999999999999999


Q ss_pred             CeEEEEEcCCceeeeee----cCCceEEEEecCCCccccCCCCC-------------ceEEEeeccC--CcceeeeEEcC
Q 046394          172 CKIKIWDLRKYEVLQTL----PGHAKTLDFSRKDSGDFSGSHNY-------------NRYMGYSMVK--GYQIGKVSFRP  232 (378)
Q Consensus       172 ~~i~iwd~~~~~~~~~~----~~~i~~~~~sp~g~~~~~~~~~~-------------~~~~~~~~~~--~~~v~~~~~sp  232 (378)
                      ++++||+.+..-++...    .-...++..+|++.+.+...-..             .....+.+ |  .+.-..+.|||
T Consensus       364 ks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feG-h~vaGys~~v~fSp  442 (503)
T KOG0282|consen  364 KSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEG-HSVAGYSCQVDFSP  442 (503)
T ss_pred             ccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcc-eeccCceeeEEEcC
Confidence            99999999988776655    24677889999888633221111             11112222 2  23356799999


Q ss_pred             CCCeEEEecCCCeEEEE
Q 046394          233 YEDVLGIGHSMGVSGIL  249 (378)
Q Consensus       233 ~g~~l~~~~~~g~~~~~  249 (378)
                      ||.+|++|+.+|.+.+|
T Consensus       443 DG~~l~SGdsdG~v~~w  459 (503)
T KOG0282|consen  443 DGRTLCSGDSDGKVNFW  459 (503)
T ss_pred             CCCeEEeecCCccEEEe
Confidence            99888777777755544

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=4.6e-26  Score=201.15  Aligned_cols=225  Identities=11%  Similarity=0.123  Sum_probs=201.8

Q ss_pred             ccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeeccCCCe-eEEEE-----EE
Q 046394           23 QEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKEHGEV-LKLQF-----LL   95 (378)
Q Consensus        23 ~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~-~~l~~-----~l   95 (378)
                      ..|.+++||.++...+.++....-+|.+..|-+..+++++|+.|..|+||+ .++..++.+.+|.+- .+++.     ++
T Consensus        33 ynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~v  112 (794)
T KOG0276|consen   33 YNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYV  112 (794)
T ss_pred             ecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeE
Confidence            468899999999999999999889999999999999999999999999999 678899999999986 88888     99


Q ss_pred             EEEeCCCeEEEEEcCCC-cEEEEEecCCCCeeEEEEcCC-CCEEEEEcCCCe--------------eeecCCCEEEEEEe
Q 046394           96 ASINKLGQLRYQNVTMG-EIVGNFWTGLGRTDVIRVNPF-NGVVSLGHSGGT--------------MLCHQGPVSALAFH  159 (378)
Q Consensus        96 ~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~d~~--------------~~~h~~~v~~~~~s  159 (378)
                      +|+|+|-+|++||.+.. .+.++|.+|...|.+++|+|. .+.+++++-|++              +.+|...|+|+++-
T Consensus       113 LtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy  192 (794)
T KOG0276|consen  113 LTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYY  192 (794)
T ss_pred             EecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEec
Confidence            99999999999999865 678999999999999999994 579999999998              78999999999998


Q ss_pred             cCC--CEEEEEECCCeEEEEEcCCceeeeee--c-CCceEEEEec----------CCCccccCCCCCceEEEeeccCCcc
Q 046394          160 PNG--HLMATSGKDCKIKIWDLRKYEVLQTL--P-GHAKTLDFSR----------KDSGDFSGSHNYNRYMGYSMVKGYQ  224 (378)
Q Consensus       160 p~g--~~l~t~~~d~~i~iwd~~~~~~~~~~--~-~~i~~~~~sp----------~g~~~~~~~~~~~~~~~~~~~~~~~  224 (378)
                      |.|  -+|+||+.|.+|+|||..+..|+.++  | ..|+.+.|+|          ||...+|+..+-.....+.. ...+
T Consensus       193 ~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~-gleR  271 (794)
T KOG0276|consen  193 TGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNY-GLER  271 (794)
T ss_pred             cCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhc-CCce
Confidence            844  58999999999999999999999999  4 6788888888          67778888877776666655 6678


Q ss_pred             eeeeEEcCCCCeEEEecCCCeEEE
Q 046394          225 IGKVSFRPYEDVLGIGHSMGVSGI  248 (378)
Q Consensus       225 v~~~~~sp~g~~l~~~~~~g~~~~  248 (378)
                      |++++-.+.+..+++|.++|.+.+
T Consensus       272 vW~I~~~k~~~~i~vG~Deg~i~v  295 (794)
T KOG0276|consen  272 VWCIAAHKGDGKIAVGFDEGSVTV  295 (794)
T ss_pred             EEEEeecCCCCeEEEeccCCcEEE
Confidence            999999999999999999996543

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.95  E-value=3.7e-25  Score=218.75  Aligned_cols=228  Identities=14%  Similarity=0.156  Sum_probs=180.8

Q ss_pred             cceeeeeecccceeeEE-----eecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCC---------CeEEeeccCCCee
Q 046394           24 EAIAREVDILSSRNQYD-----IMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDG---------TELHCSKEHGEVL   89 (378)
Q Consensus        24 ~~~i~~~d~~~~~~~~~-----l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~---------~~~~~~~~~~~~~   89 (378)
                      ++..++|+..+......     +..|...|.+++|+|+|++||+|+.|+.|+||+...         .+...+.++..+.
T Consensus       457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~  536 (793)
T PLN00181        457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLS  536 (793)
T ss_pred             hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCcee
Confidence            45667777766554433     345888999999999999999999999999999532         1223344455557


Q ss_pred             EEEE------EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcC-CCCEEEEEcCCCe-------------eeec
Q 046394           90 KLQF------LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNP-FNGVVSLGHSGGT-------------MLCH  149 (378)
Q Consensus        90 ~l~~------~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~-------------~~~h  149 (378)
                      +++|      ++++++.||+|++||+.+++.+..+..|.+.|.+++|+| ++.+|++|+.|+.             ...+
T Consensus       537 ~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~  616 (793)
T PLN00181        537 GICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKT  616 (793)
T ss_pred             eEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEec
Confidence            7888      799999999999999999999999999999999999997 7899999999997             1123


Q ss_pred             CCCEEEEEEec-CCCEEEEEECCCeEEEEEcCCce-eeeee--c-CCceEEEEec---------CCCccccCCCC-----
Q 046394          150 QGPVSALAFHP-NGHLMATSGKDCKIKIWDLRKYE-VLQTL--P-GHAKTLDFSR---------KDSGDFSGSHN-----  210 (378)
Q Consensus       150 ~~~v~~~~~sp-~g~~l~t~~~d~~i~iwd~~~~~-~~~~~--~-~~i~~~~~sp---------~g~~~~~~~~~-----  210 (378)
                      ...|.++.|++ +|.+|++|+.||.|++||+++.. .+..+  | ..|+++.|.+         |+...+|+...     
T Consensus       617 ~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~~~~~  696 (793)
T PLN00181        617 KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISGI  696 (793)
T ss_pred             CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEeCCCEEEEEECCCEEEEEeCCCCcccc
Confidence            46789999964 79999999999999999998865 45555  3 5788888863         33447777642     


Q ss_pred             -CceEEEeeccCCcceeeeEEcCCCCeEEEecCCCeEEEEEcC
Q 046394          211 -YNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILIPG  252 (378)
Q Consensus       211 -~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~~~  252 (378)
                       ..++..+.+ |...+..+.|+|++.+|++|+.||.+.+|...
T Consensus       697 ~~~~l~~~~g-h~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~  738 (793)
T PLN00181        697 NETPLHSFMG-HTNVKNFVGLSVSDGYIATGSETNEVFVYHKA  738 (793)
T ss_pred             CCcceEEEcC-CCCCeeEEEEcCCCCEEEEEeCCCEEEEEECC
Confidence             245667777 88889999999999999999999988888643

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.95  E-value=5.2e-27  Score=185.47  Aligned_cols=215  Identities=16%  Similarity=0.195  Sum_probs=177.5

Q ss_pred             eEEeecCCCCceEEEEcC---CCCEEEEEeCCCcEEEEe-CCCCeEEeeccCCCe-eEEEE-----EEEEEeCCCeEEEE
Q 046394           38 QYDIMLPELGPYTLDFTS---SGRYMAAAGCKGYPYFYN-RDGTELHCSKEHGEV-LKLQF-----LLASINKLGQLRYQ  107 (378)
Q Consensus        38 ~~~l~~~~~~v~~~~~sp---~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~-~~l~~-----~l~s~~~d~~i~iw  107 (378)
                      .....+|+.+|..++|||   +|-+|++++.||.--+-+ -+|.=+-++.+|.+. .+...     ..++++.|-+-++|
T Consensus         7 pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw   86 (334)
T KOG0278|consen    7 PLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVW   86 (334)
T ss_pred             ceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhh
Confidence            456788999999999985   788999999999887777 677788999999986 55555     77889999999999


Q ss_pred             EcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe---------------eeecCCCEEEEEEecCCCEEEEEECCC
Q 046394          108 NVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT---------------MLCHQGPVSALAFHPNGHLMATSGKDC  172 (378)
Q Consensus       108 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~---------------~~~h~~~v~~~~~sp~g~~l~t~~~d~  172 (378)
                      |.-+|..+.+|. |...|.+++|+.|..+|++|+.+..               +.+|.+.|..+-|....+.|++++.|+
T Consensus        87 ~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~  165 (334)
T KOG0278|consen   87 DAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDK  165 (334)
T ss_pred             hhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCC
Confidence            999999999885 7788999999999999999998776               789999999999999999999999999


Q ss_pred             eEEEEEcCCceeeeee--cCCceEEEEecCCCc---------cc------------------------------------
Q 046394          173 KIKIWDLRKYEVLQTL--PGHAKTLDFSRKDSG---------DF------------------------------------  205 (378)
Q Consensus       173 ~i~iwd~~~~~~~~~~--~~~i~~~~~sp~g~~---------~~------------------------------------  205 (378)
                      +||+||.+++..++++  ..+++++.++++|.+         .+                                    
T Consensus       166 tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGged  245 (334)
T KOG0278|consen  166 TVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGGED  245 (334)
T ss_pred             ceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEecCceeEEeccccccceeeccCccccccccccCCCceEEecCcc
Confidence            9999999999999999  799999999999983         11                                    


Q ss_pred             -----cCCCCCceEEEe-eccCCcceeeeEEcCCCCeEEEecCCCeEEEEEcCCCCcccccccCCCc
Q 046394          206 -----SGSHNYNRYMGY-SMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILIPGSGEPNFDSWVANPF  266 (378)
Q Consensus       206 -----~~~~~~~~~~~~-~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~~~s~d~~i~~w~~~~~  266 (378)
                           ++-.++..+..+ ++ |..+|.+|.|+|+|..            +.+||.|++|++|..+|-
T Consensus       246 ~~~~kfDy~TgeEi~~~nkg-h~gpVhcVrFSPdGE~------------yAsGSEDGTirlWQt~~~  299 (334)
T KOG0278|consen  246 FKVYKFDYNTGEEIGSYNKG-HFGPVHCVRFSPDGEL------------YASGSEDGTIRLWQTTPG  299 (334)
T ss_pred             eEEEEEeccCCceeeecccC-CCCceEEEEECCCCce------------eeccCCCceEEEEEecCC
Confidence                 222333344444 45 7888999999999954            555555556666665543

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.95  E-value=2.3e-25  Score=184.97  Aligned_cols=227  Identities=12%  Similarity=0.074  Sum_probs=188.5

Q ss_pred             ccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeecc-CCCeeEEEE-----EE
Q 046394           23 QEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKE-HGEVLKLQF-----LL   95 (378)
Q Consensus        23 ~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~-~~~~~~l~~-----~l   95 (378)
                      .|..-.+|++.++.....+.+|...|+++.||.+|.+||||+.+|.|.||. .++.....+.. -.+..-+.|     +|
T Consensus        84 gDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~il  163 (399)
T KOG0296|consen   84 GDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHIL  163 (399)
T ss_pred             CCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEE
Confidence            355667899999999999999999999999999999999999999999999 55666666652 223344555     89


Q ss_pred             EEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe------------------------------
Q 046394           96 ASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT------------------------------  145 (378)
Q Consensus        96 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~------------------------------  145 (378)
                      +.|+.||.+.+|.+.++...+.+.+|..++++=.|.|+|+.++++..||+                              
T Consensus       164 lAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~  243 (399)
T KOG0296|consen  164 LAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNL  243 (399)
T ss_pred             EeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCcccccc
Confidence            99999999999999998888899999999999999999999999999998                              


Q ss_pred             ---------------------------ee--------ecCCCEEEEEEec---CCCEEEEEECCCeEEEEEcCCceeeee
Q 046394          146 ---------------------------ML--------CHQGPVSALAFHP---NGHLMATSGKDCKIKIWDLRKYEVLQT  187 (378)
Q Consensus       146 ---------------------------~~--------~h~~~v~~~~~sp---~g~~l~t~~~d~~i~iwd~~~~~~~~~  187 (378)
                                                 ..        .+...+.|+.+.|   .=.++|+|+.||+|.|||+.+.++.+.
T Consensus       244 ~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~  323 (399)
T KOG0296|consen  244 AGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHI  323 (399)
T ss_pred             ccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhhee
Confidence                                       11        2223334444444   445678999999999999998877777


Q ss_pred             e--cCCceEEEEec---------CCCccccCCCCCceEEEeeccCCcceeeeEEcCCCCeEEEecCCCeEEEEE
Q 046394          188 L--PGHAKTLDFSR---------KDSGDFSGSHNYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILI  250 (378)
Q Consensus       188 ~--~~~i~~~~~sp---------~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~  250 (378)
                      +  ..+|..+.|-+         +|....|+.+++++...+.+ |...|.+++++|+++++++++.|+...+|-
T Consensus       324 c~he~~V~~l~w~~t~~l~t~c~~g~v~~wDaRtG~l~~~y~G-H~~~Il~f~ls~~~~~vvT~s~D~~a~VF~  396 (399)
T KOG0296|consen  324 CEHEDGVTKLKWLNTDYLLTACANGKVRQWDARTGQLKFTYTG-HQMGILDFALSPQKRLVVTVSDDNTALVFE  396 (399)
T ss_pred             ccCCCceEEEEEcCcchheeeccCceEEeeeccccceEEEEec-CchheeEEEEcCCCcEEEEecCCCeEEEEe
Confidence            6  47799998877         56669999999999999999 999999999999998888888887666553

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.95  E-value=2.4e-25  Score=205.37  Aligned_cols=212  Identities=19%  Similarity=0.219  Sum_probs=174.1

Q ss_pred             EEeecC-CCCceEEEEcCCCCEEEEEeCCCcEEEEeC-CCC--eEEeeccCCCe-eEEEE-----EEEEEeCCCeEEEEE
Q 046394           39 YDIMLP-ELGPYTLDFTSSGRYMAAAGCKGYPYFYNR-DGT--ELHCSKEHGEV-LKLQF-----LLASINKLGQLRYQN  108 (378)
Q Consensus        39 ~~l~~~-~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~-~~~--~~~~~~~~~~~-~~l~~-----~l~s~~~d~~i~iwd  108 (378)
                      ..+..| ...|.++.|+|+|+++++++.++.+++|+. .+.  .+..+.+|... .+++|     ++++++.|++|+|||
T Consensus       152 ~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd  231 (456)
T KOG0266|consen  152 QTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWD  231 (456)
T ss_pred             eeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEee
Confidence            334343 678999999999999999999999999995 344  46677788765 99999     999999999999999


Q ss_pred             c-CCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe--------------eeecCCCEEEEEEecCCCEEEEEECCCe
Q 046394          109 V-TMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT--------------MLCHQGPVSALAFHPNGHLMATSGKDCK  173 (378)
Q Consensus       109 ~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~--------------~~~h~~~v~~~~~sp~g~~l~t~~~d~~  173 (378)
                      + ..+..+.++.+|...|++++|+|+++++++|+.|+.              +.+|.+.|++++|+++|++|++++.|+.
T Consensus       232 ~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~  311 (456)
T KOG0266|consen  232 LKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGT  311 (456)
T ss_pred             ccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCcc
Confidence            9 556899999999999999999999999999999998              7889999999999999999999999999


Q ss_pred             EEEEEcCCce--eeeee----cC-CceEEEEecCCCc----------cccCCCCCceEEEeeccCCc---ceeeeEEcCC
Q 046394          174 IKIWDLRKYE--VLQTL----PG-HAKTLDFSRKDSG----------DFSGSHNYNRYMGYSMVKGY---QIGKVSFRPY  233 (378)
Q Consensus       174 i~iwd~~~~~--~~~~~----~~-~i~~~~~sp~g~~----------~~~~~~~~~~~~~~~~~~~~---~v~~~~~sp~  233 (378)
                      |+|||+.++.  ++..+    .. +++++.|+|+|.+          .+|+.........+.+ |..   .+.+..+++.
T Consensus       312 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~  390 (456)
T KOG0266|consen  312 IRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTG-HSNLVRCIFSPTLSTG  390 (456)
T ss_pred             EEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecc-cCCcceeEecccccCC
Confidence            9999999999  55666    23 6899999999986          5666666666666666 433   4455556677


Q ss_pred             CCeEEEecCCCeEEEEEc
Q 046394          234 EDVLGIGHSMGVSGILIP  251 (378)
Q Consensus       234 g~~l~~~~~~g~~~~~~~  251 (378)
                      |.++++|+.|+.+.+|..
T Consensus       391 ~~~i~sg~~d~~v~~~~~  408 (456)
T KOG0266|consen  391 GKLIYSGSEDGSVYVWDS  408 (456)
T ss_pred             CCeEEEEeCCceEEEEeC
Confidence            766665555555544443

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.95  E-value=8.6e-27  Score=190.83  Aligned_cols=217  Identities=16%  Similarity=0.195  Sum_probs=171.2

Q ss_pred             CCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEE--------eeccCCCe-eEEEE-----EEEEEeCCCeEEEEEc
Q 046394           45 ELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELH--------CSKEHGEV-LKLQF-----LLASINKLGQLRYQNV  109 (378)
Q Consensus        45 ~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~--------~~~~~~~~-~~l~~-----~l~s~~~d~~i~iwd~  109 (378)
                      ...+-|..|||||+||++|+.||-|.+|| .+|....        .+.-+..+ .|+.|     .+++|+.||.|++|.+
T Consensus       213 KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri  292 (508)
T KOG0275|consen  213 KSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRI  292 (508)
T ss_pred             ccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEE
Confidence            35688999999999999999999999999 5554332        23344554 89999     9999999999999999


Q ss_pred             CCCcEEEEEe-cCCCCeeEEEEcCCCCEEEEEcCCCe--------------eeecCCCEEEEEEecCCCEEEEEECCCeE
Q 046394          110 TMGEIVGNFW-TGLGRTDVIRVNPFNGVVSLGHSGGT--------------MLCHQGPVSALAFHPNGHLMATSGKDCKI  174 (378)
Q Consensus       110 ~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~d~~--------------~~~h~~~v~~~~~sp~g~~l~t~~~d~~i  174 (378)
                      .+|++++.|. .|...|+|+.||.|+..+++++.|..              +.+|...|+...|+++|+++++++.||+|
T Consensus       293 ~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtv  372 (508)
T KOG0275|consen  293 ETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTV  372 (508)
T ss_pred             ecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccE
Confidence            9999999997 68899999999999999999999887              88999999999999999999999999999


Q ss_pred             EEEEcCCceeeeee-----cCCceEEEEecCCCc--cccCCC--------CCceEEEeec--cCCcceeeeEEcCCCCeE
Q 046394          175 KIWDLRKYEVLQTL-----PGHAKTLDFSRKDSG--DFSGSH--------NYNRYMGYSM--VKGYQIGKVSFRPYEDVL  237 (378)
Q Consensus       175 ~iwd~~~~~~~~~~-----~~~i~~~~~sp~g~~--~~~~~~--------~~~~~~~~~~--~~~~~v~~~~~sp~g~~l  237 (378)
                      ++|+..+.+|+.++     ..+++++..-|...-  .+.+..        .++.+..+..  ..++..-+...||.|.++
T Consensus       373 kvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgGdFi~~~lSpkGewi  452 (508)
T KOG0275|consen  373 KVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGGDFINAILSPKGEWI  452 (508)
T ss_pred             EEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccCCceEEEEecCCCcEE
Confidence            99999999999998     256788887776543  111111        2223333321  123345567889999999


Q ss_pred             EEecCCCeEEEEE--cCCCCcccccc
Q 046394          238 GIGHSMGVSGILI--PGSGEPNFDSW  261 (378)
Q Consensus       238 ~~~~~~g~~~~~~--~~s~d~~i~~w  261 (378)
                      .+.+.|+....|.  +|.-+.++.+-
T Consensus       453 YcigED~vlYCF~~~sG~LE~tl~Vh  478 (508)
T KOG0275|consen  453 YCIGEDGVLYCFSVLSGKLERTLPVH  478 (508)
T ss_pred             EEEccCcEEEEEEeecCceeeeeecc
Confidence            9999999775543  44444554444

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.94  E-value=9.2e-26  Score=179.50  Aligned_cols=218  Identities=14%  Similarity=0.185  Sum_probs=175.9

Q ss_pred             EEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCCCeE---EeeccCCCe-eEEEE------EEEEEeCCCeEEEEE
Q 046394           39 YDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTEL---HCSKEHGEV-LKLQF------LLASINKLGQLRYQN  108 (378)
Q Consensus        39 ~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~-~~l~~------~l~s~~~d~~i~iwd  108 (378)
                      ..+.+|...|.+++|+.+|..|++|+.|+++.+|++.....   ...++|.+. -.++|      +|++++.|.+|++||
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd   93 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD   93 (313)
T ss_pred             HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence            45677888999999999999999999999999999654322   345677754 77777      999999999999999


Q ss_pred             cCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe-------------------------------------------
Q 046394          109 VTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT-------------------------------------------  145 (378)
Q Consensus       109 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~-------------------------------------------  145 (378)
                      +++++++..+....+ -.-++|+|+|.++++++.|..                                           
T Consensus        94 ~r~~k~~~~i~~~~e-ni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~  172 (313)
T KOG1407|consen   94 IRSGKCTARIETKGE-NINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVE  172 (313)
T ss_pred             eccCcEEEEeeccCc-ceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEE
Confidence            999999988865433 446899999999999988776                                           


Q ss_pred             ------------eeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee---cCCceEEEEecCCCc-------
Q 046394          146 ------------MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL---PGHAKTLDFSRKDSG-------  203 (378)
Q Consensus       146 ------------~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~~sp~g~~-------  203 (378)
                                  +.+|+....||.|+|+|++||+|+.|..+.+||+...-|++.+   .-+|..++||.||++       
T Consensus       173 ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSED  252 (313)
T KOG1407|consen  173 ILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASED  252 (313)
T ss_pred             EEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCcc
Confidence                        6789988999999999999999999999999999988887777   579999999999997       


Q ss_pred             ---cccCCCCCceEEEeeccCCcceeeeEEcCCCCeEEEecCCCeEEEEEcCCCCccccccc
Q 046394          204 ---DFSGSHNYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILIPGSGEPNFDSWV  262 (378)
Q Consensus       204 ---~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~~~s~d~~i~~w~  262 (378)
                         ++....++..+....  +.++.+.|+|+|...+||.+.+|..-   .+.-..++++++-
T Consensus       253 h~IDIA~vetGd~~~eI~--~~~~t~tVAWHPk~~LLAyA~ddk~~---d~~reag~vKiFG  309 (313)
T KOG1407|consen  253 HFIDIAEVETGDRVWEIP--CEGPTFTVAWHPKRPLLAYACDDKDG---DSNREAGTVKIFG  309 (313)
T ss_pred             ceEEeEecccCCeEEEee--ccCCceeEEecCCCceeeEEecCCCC---ccccccceeEEec
Confidence               344455555554443  57889999999999999988776521   1222335566653

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.94  E-value=5.5e-27  Score=201.18  Aligned_cols=229  Identities=14%  Similarity=0.121  Sum_probs=187.0

Q ss_pred             EEEeccceeeeeeccc-ceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeeccCCCeeEEEE---
Q 046394           19 WRIKQEAIAREVDILS-SRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKEHGEVLKLQF---   93 (378)
Q Consensus        19 ~~~~~~~~i~~~d~~~-~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~~~l~~---   93 (378)
                      ++...|+.|++|++-. +.++.++.+|..+|..++|+.+|..++++|.|+.|++|| .+|.++..+....-++++.|   
T Consensus       231 LS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd  310 (503)
T KOG0282|consen  231 LSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVPTCVKFHPD  310 (503)
T ss_pred             EecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEecCCCceeeecCCC
Confidence            3445567777777766 889999999999999999999999999999999999999 67888777766555699999   


Q ss_pred             ---EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe---------------eeecCCCEEE
Q 046394           94 ---LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT---------------MLCHQGPVSA  155 (378)
Q Consensus        94 ---~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~---------------~~~h~~~v~~  155 (378)
                         .|++|+.|+.|+.||+++++.++.+..|.+.|..+.|-++|..++++++++.               ...+.....+
T Consensus       311 ~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~  390 (503)
T KOG0282|consen  311 NQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPC  390 (503)
T ss_pred             CCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcc
Confidence               8999999999999999999999999999999999999999999999999998               2223345578


Q ss_pred             EEEecCCCEEEEEECCCeEEEEEcCCceee---eee-----cCCceEEEEecCCCc----------cccCCCCCceEEEe
Q 046394          156 LAFHPNGHLMATSGKDCKIKIWDLRKYEVL---QTL-----PGHAKTLDFSRKDSG----------DFSGSHNYNRYMGY  217 (378)
Q Consensus       156 ~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~---~~~-----~~~i~~~~~sp~g~~----------~~~~~~~~~~~~~~  217 (378)
                      +..+|++.+++.-+.|+.|.||.+...-.+   ..+     .+....+.|||||.+          .+|+..+...+..+
T Consensus       391 ~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~l  470 (503)
T KOG0282|consen  391 LTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKL  470 (503)
T ss_pred             eecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhcc
Confidence            999999999999999999999987542222   122     356688999999987          55666666667777


Q ss_pred             eccCCcceeeeEEcCCCC-eEEEecCCCeEEE
Q 046394          218 SMVKGYQIGKVSFRPYED-VLGIGHSMGVSGI  248 (378)
Q Consensus       218 ~~~~~~~v~~~~~sp~g~-~l~~~~~~g~~~~  248 (378)
                      .. |..++..+.|+|... .+|+|+-+|.+.+
T Consensus       471 ka-h~~~ci~v~wHP~e~Skvat~~w~G~Iki  501 (503)
T KOG0282|consen  471 KA-HDQPCIGVDWHPVEPSKVATCGWDGLIKI  501 (503)
T ss_pred             cc-CCcceEEEEecCCCcceeEecccCceeEe
Confidence            77 889999999999874 4455555554433

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=2.4e-26  Score=193.66  Aligned_cols=217  Identities=14%  Similarity=0.093  Sum_probs=173.9

Q ss_pred             eeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-C-CC--CeEEeeccCCCe-eEEEE-----EEEEEeCCCeEEE
Q 046394           37 NQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-R-DG--TELHCSKEHGEV-LKLQF-----LLASINKLGQLRY  106 (378)
Q Consensus        37 ~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~-~~--~~~~~~~~~~~~-~~l~~-----~l~s~~~d~~i~i  106 (378)
                      ....+..|...|+-+.||++|+|||+++.|.+..+|. . ++  ...+++.+|..+ ..+.|     ++++|+.|..+.+
T Consensus       216 t~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~l  295 (519)
T KOG0293|consen  216 TWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSL  295 (519)
T ss_pred             hhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheee
Confidence            3456788999999999999999999999999999999 2 22  235778888876 88999     9999999999999


Q ss_pred             EEcCCCcEEEEEecC-CCCeeEEEEcCCCCEEEEEcCCCe--eeec------------CCCEEEEEEecCCCEEEEEECC
Q 046394          107 QNVTMGEIVGNFWTG-LGRTDVIRVNPFNGVVSLGHSGGT--MLCH------------QGPVSALAFHPNGHLMATSGKD  171 (378)
Q Consensus       107 wd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~d~~--~~~h------------~~~v~~~~~sp~g~~l~t~~~d  171 (378)
                      ||+.+|.....+... ...+.+++|.|||..+++|+.|+.  +..+            ...|.+++.++||+++++.+.|
T Consensus       296 wDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d  375 (519)
T KOG0293|consen  296 WDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVD  375 (519)
T ss_pred             ccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEecc
Confidence            999999998887643 578999999999999999999988  1111            2347888888899888888888


Q ss_pred             CeEEEEEcCCceeeeee--cCCceEEEEecCCC-----------------------------------------------
Q 046394          172 CKIKIWDLRKYEVLQTL--PGHAKTLDFSRKDS-----------------------------------------------  202 (378)
Q Consensus       172 ~~i~iwd~~~~~~~~~~--~~~i~~~~~sp~g~-----------------------------------------------  202 (378)
                      ..|++|+..+......+  +.+++++++|.||+                                               
T Consensus       376 ~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fi  455 (519)
T KOG0293|consen  376 KKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFI  455 (519)
T ss_pred             cceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceE
Confidence            88888888765554434  67788888888776                                               


Q ss_pred             --------ccccCCCCCceEEEeeccCCcceeeeEEcCCCCeEEEecCCCeEEEEEcCCCCcccccccCCC
Q 046394          203 --------GDFSGSHNYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILIPGSGEPNFDSWVANP  265 (378)
Q Consensus       203 --------~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~~~s~d~~i~~w~~~~  265 (378)
                              ..+|....+.++..+.| |...|++|+|+|...           ..++++++|++||+|...+
T Consensus       456 aSGSED~kvyIWhr~sgkll~~LsG-Hs~~vNcVswNP~~p-----------~m~ASasDDgtIRIWg~~~  514 (519)
T KOG0293|consen  456 ASGSEDSKVYIWHRISGKLLAVLSG-HSKTVNCVSWNPADP-----------EMFASASDDGTIRIWGPSD  514 (519)
T ss_pred             EecCCCceEEEEEccCCceeEeecC-CcceeeEEecCCCCH-----------HHhhccCCCCeEEEecCCc
Confidence                    27788888888888888 888999999999875           3355556666677775543

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.94  E-value=9.2e-25  Score=190.09  Aligned_cols=213  Identities=21%  Similarity=0.263  Sum_probs=178.4

Q ss_pred             EEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeC-CCCeEEeeccCCCe-eEEEE-----EEEEEeCCCeEEEEEcCC
Q 046394           39 YDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNR-DGTELHCSKEHGEV-LKLQF-----LLASINKLGQLRYQNVTM  111 (378)
Q Consensus        39 ~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~-~~l~~-----~l~s~~~d~~i~iwd~~~  111 (378)
                      ..+.+|...|.+++|+|++++|++++.+|.|.+|+. .+.....+..|... ..+.|     .+++++.|+.|.+||+.+
T Consensus         3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~   82 (289)
T cd00200           3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLET   82 (289)
T ss_pred             hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCc
Confidence            456789999999999999999999999999999995 45566777778766 68888     899999999999999998


Q ss_pred             CcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe--------------eeecCCCEEEEEEecCCCEEEEEECCCeEEEE
Q 046394          112 GEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT--------------MLCHQGPVSALAFHPNGHLMATSGKDCKIKIW  177 (378)
Q Consensus       112 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~--------------~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iw  177 (378)
                      ++.+..+..+...+.++.|+|++.++++++.++.              +..|...|.+++|+|++.++++++.|+.|++|
T Consensus        83 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~  162 (289)
T cd00200          83 GECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLW  162 (289)
T ss_pred             ccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEE
Confidence            8888888888889999999999999998886766              44588889999999999999888889999999


Q ss_pred             EcCCceeeeee--c-CCceEEEEecCCCc----------cccCCCCCceEEEeeccCCcceeeeEEcCCCCeEEEecCCC
Q 046394          178 DLRKYEVLQTL--P-GHAKTLDFSRKDSG----------DFSGSHNYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMG  244 (378)
Q Consensus       178 d~~~~~~~~~~--~-~~i~~~~~sp~g~~----------~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g  244 (378)
                      |+++++++..+  + ..+.++.|+|++..          .+|+......+..+.. |...+.++.|+|++.++++++.+|
T Consensus       163 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~  241 (289)
T cd00200         163 DLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRG-HENGVNSVAFSPDGYLLASGSEDG  241 (289)
T ss_pred             EccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhh-cCCceEEEEEcCCCcEEEEEcCCC
Confidence            99988888777  3 58999999998753          5566555566655555 677899999999988888877777


Q ss_pred             eEEEEEcC
Q 046394          245 VSGILIPG  252 (378)
Q Consensus       245 ~~~~~~~~  252 (378)
                      .+.+|...
T Consensus       242 ~i~i~~~~  249 (289)
T cd00200         242 TIRVWDLR  249 (289)
T ss_pred             cEEEEEcC
Confidence            66666543

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.94  E-value=2.7e-27  Score=195.38  Aligned_cols=229  Identities=13%  Similarity=0.150  Sum_probs=188.6

Q ss_pred             ceeeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeeccCCCe-eEEE
Q 046394           15 VEKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKEHGEV-LKLQ   92 (378)
Q Consensus        15 ~~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~-~~l~   92 (378)
                      .++.++..-|++|++||..+......+.+|++.|.|+.|.  .+.|++|++|.+|+||| .+|+++.++.+|.+. ..+.
T Consensus       207 D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlr  284 (499)
T KOG0281|consen  207 DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLR  284 (499)
T ss_pred             chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEE
Confidence            5677777888999999999999999999999999999997  55999999999999999 688999999999876 9999


Q ss_pred             E---EEEEEeCCCeEEEEEcCCCc---EEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe--------------eeecCCC
Q 046394           93 F---LLASINKLGQLRYQNVTMGE---IVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT--------------MLCHQGP  152 (378)
Q Consensus        93 ~---~l~s~~~d~~i~iwd~~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~--------------~~~h~~~  152 (378)
                      |   +++|++.|.++.+||+....   +.+.+.+|...|+.+.|+..  ++++++.|.+              +.+|...
T Consensus       285 f~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~k--yIVsASgDRTikvW~~st~efvRtl~gHkRG  362 (499)
T KOG0281|consen  285 FSNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK--YIVSASGDRTIKVWSTSTCEFVRTLNGHKRG  362 (499)
T ss_pred             EeCCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccccc--eEEEecCCceEEEEeccceeeehhhhccccc
Confidence            9   99999999999999997654   33456688899999998755  9999999998              7789999


Q ss_pred             EEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee--c-CCceEEEEec--------CCCccccCCCCCc---------
Q 046394          153 VSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL--P-GHAKTLDFSR--------KDSGDFSGSHNYN---------  212 (378)
Q Consensus       153 v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~--~-~~i~~~~~sp--------~g~~~~~~~~~~~---------  212 (378)
                      |.|+.+  .|+++++||.|.+|++||+..|.+++.+  | .-|.++.|..        ||+..+|+.....         
T Consensus       363 IAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd~krIVSGaYDGkikvWdl~aaldpra~~~~~  440 (499)
T KOG0281|consen  363 IACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLQAALDPRAPASTL  440 (499)
T ss_pred             ceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeecCceeeeccccceEEEEecccccCCcccccch
Confidence            988887  5889999999999999999999999998  3 5688888865        6777888754332         


Q ss_pred             eEEEeeccCCcceeeeEEcCCCCeEEEecCCCeEEEEEcCCCCcccccccCC
Q 046394          213 RYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILIPGSGEPNFDSWVAN  264 (378)
Q Consensus       213 ~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~~~s~d~~i~~w~~~  264 (378)
                      ++..... |.+.|..+.|..-              -+++.+.|.+|-+|+..
T Consensus       441 Cl~~lv~-hsgRVFrLQFD~f--------------qIvsssHddtILiWdFl  477 (499)
T KOG0281|consen  441 CLRTLVE-HSGRVFRLQFDEF--------------QIISSSHDDTILIWDFL  477 (499)
T ss_pred             HHHhhhh-ccceeEEEeecce--------------EEEeccCCCeEEEEEcC
Confidence            2222333 7778999999643              24455556667777753

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.94  E-value=1.9e-25  Score=181.05  Aligned_cols=217  Identities=19%  Similarity=0.183  Sum_probs=176.9

Q ss_pred             eeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCCCe--EEeeccCCCe-eEEEE-----EEEEEeCCCeEEEEE
Q 046394           37 NQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTE--LHCSKEHGEV-LKLQF-----LLASINKLGQLRYQN  108 (378)
Q Consensus        37 ~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~-~~l~~-----~l~s~~~d~~i~iwd  108 (378)
                      .+..+.+|.+.|+.+.|+|+|.+||+|+.|..|.+|+..+.+  ...+.+|.+. ..+.|     .++++|.|.+|+.||
T Consensus        39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD  118 (338)
T KOG0265|consen   39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWD  118 (338)
T ss_pred             hhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEe
Confidence            455678999999999999999999999999999999966544  5678899987 99999     999999999999999


Q ss_pred             cCCCcEEEEEecCCCCeeEEEEcCCCC-EEEEEcCCCe-------------eeecCCCEEEEEEecCCCEEEEEECCCeE
Q 046394          109 VTMGEIVGNFWTGLGRTDVIRVNPFNG-VVSLGHSGGT-------------MLCHQGPVSALAFHPNGHLMATSGKDCKI  174 (378)
Q Consensus       109 ~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~d~~-------------~~~h~~~v~~~~~sp~g~~l~t~~~d~~i  174 (378)
                      +++|+.+..+..|..-++.+.-+.-|. ++.+++.|++             .......++++.|..++..+.+|+-|+.|
T Consensus       119 ~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~i  198 (338)
T KOG0265|consen  119 AETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDI  198 (338)
T ss_pred             cccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccCce
Confidence            999999999999999999999666664 6667778887             22236789999999999999999999999


Q ss_pred             EEEEcCCceeeeee---cCCceEEEEecCCCc----------cccCCCC----CceEEEeecc-CC--cceeeeEEcCCC
Q 046394          175 KIWDLRKYEVLQTL---PGHAKTLDFSRKDSG----------DFSGSHN----YNRYMGYSMV-KG--YQIGKVSFRPYE  234 (378)
Q Consensus       175 ~iwd~~~~~~~~~~---~~~i~~~~~sp~g~~----------~~~~~~~----~~~~~~~~~~-~~--~~v~~~~~sp~g  234 (378)
                      ++||++....++++   ..+|+.+..+|+|.+          .+|+.+.    ..++..+.++ |.  .....++|+|++
T Consensus       199 kvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~  278 (338)
T KOG0265|consen  199 KVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNG  278 (338)
T ss_pred             eeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCC
Confidence            99999999999999   378999999999986          3333222    1223444331 21  234678999999


Q ss_pred             CeEEEecCCCeEEEEEcCC
Q 046394          235 DVLGIGHSMGVSGILIPGS  253 (378)
Q Consensus       235 ~~l~~~~~~g~~~~~~~~s  253 (378)
                      ..+.+|+.|..+.+|.+.+
T Consensus       279 ~~i~ags~dr~vyvwd~~~  297 (338)
T KOG0265|consen  279 TKITAGSADRFVYVWDTTS  297 (338)
T ss_pred             CccccccccceEEEeeccc
Confidence            8888888887777666544

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.94  E-value=7.4e-25  Score=182.02  Aligned_cols=152  Identities=16%  Similarity=0.267  Sum_probs=141.8

Q ss_pred             eeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeeccCCCe-eEEEE-----EEEEEeCCCeEEEEEc
Q 046394           37 NQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKEHGEV-LKLQF-----LLASINKLGQLRYQNV  109 (378)
Q Consensus        37 ~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~-~~l~~-----~l~s~~~d~~i~iwd~  109 (378)
                      .+..|..|...|++++.+|+.++++||+.|..-++|+ .+|..+..+.+|... +++.|     +||||+.+|.|+||..
T Consensus        56 S~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~  135 (399)
T KOG0296|consen   56 SLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKV  135 (399)
T ss_pred             ceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEc
Confidence            4568899999999999999999999999999999999 577778889999986 99999     9999999999999999


Q ss_pred             CCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe--------------eeecCCCEEEEEEecCCCEEEEEECCCeEE
Q 046394          110 TMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT--------------MLCHQGPVSALAFHPNGHLMATSGKDCKIK  175 (378)
Q Consensus       110 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~--------------~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~  175 (378)
                      .++.....+...-..+.-+.|+|-+.+|+.|+.||.              +.+|+.++++=.|.|+|+.++++..||+|+
T Consensus       136 stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~  215 (399)
T KOG0296|consen  136 STGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTII  215 (399)
T ss_pred             ccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEE
Confidence            999988888766688999999999999999999998              789999999999999999999999999999


Q ss_pred             EEEcCCceeeeee
Q 046394          176 IWDLRKYEVLQTL  188 (378)
Q Consensus       176 iwd~~~~~~~~~~  188 (378)
                      +||+.++.+++.+
T Consensus       216 ~Wn~ktg~p~~~~  228 (399)
T KOG0296|consen  216 VWNPKTGQPLHKI  228 (399)
T ss_pred             EEecCCCceeEEe
Confidence            9999999998887

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=1.6e-25  Score=177.44  Aligned_cols=205  Identities=16%  Similarity=0.257  Sum_probs=170.6

Q ss_pred             EEEeccceeeeeecccceeeEEee--cCCCCceEEEEcCCC-CEEEEEeCCCcEEEEe--CCCCeEEeeccCCCe-eEEE
Q 046394           19 WRIKQEAIAREVDILSSRNQYDIM--LPELGPYTLDFTSSG-RYMAAAGCKGYPYFYN--RDGTELHCSKEHGEV-LKLQ   92 (378)
Q Consensus        19 ~~~~~~~~i~~~d~~~~~~~~~l~--~~~~~v~~~~~sp~g-~~l~~~~~dg~i~iwd--~~~~~~~~~~~~~~~-~~l~   92 (378)
                      |-+-..|.+.+.++...+-+..+.  .-..+++.++||++. +.+++++.||++++||  ....+++.++.|... .++.
T Consensus        32 yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svd  111 (311)
T KOG0277|consen   32 YGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVD  111 (311)
T ss_pred             cccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEec
Confidence            445566888888886444333332  124789999999965 6888999999999999  456789999999864 8999


Q ss_pred             E------EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCC-CCEEEEEcCCCe--------------eeecCC
Q 046394           93 F------LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPF-NGVVSLGHSGGT--------------MLCHQG  151 (378)
Q Consensus        93 ~------~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~d~~--------------~~~h~~  151 (378)
                      |      .+++++.|++|++|+...++.+++|.+|...|....|+|. .+++++++.|+.              +..|..
T Consensus       112 wn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~  191 (311)
T KOG0277|consen  112 WNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNS  191 (311)
T ss_pred             cccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccc
Confidence            8      7888899999999999999999999999999999999995 479999999998              678999


Q ss_pred             CEEEEEEec-CCCEEEEEECCCeEEEEEcCCceeeeeecCCceEEEEecCCCccccCCCCCceEEEeeccCCcceeeeEE
Q 046394          152 PVSALAFHP-NGHLMATSGKDCKIKIWDLRKYEVLQTLPGHAKTLDFSRKDSGDFSGSHNYNRYMGYSMVKGYQIGKVSF  230 (378)
Q Consensus       152 ~v~~~~~sp-~g~~l~t~~~d~~i~iwd~~~~~~~~~~~~~i~~~~~sp~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  230 (378)
                      .|.++.|+. +.+.++||+.|+.|++||+++.                            ..++..+.+ |+-.|..+.|
T Consensus       192 Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~----------------------------r~pl~eL~g-h~~AVRkvk~  242 (311)
T KOG0277|consen  192 EILCCDWSKYNHNVLATGGVDNLVRGWDIRNL----------------------------RTPLFELNG-HGLAVRKVKF  242 (311)
T ss_pred             eeEeecccccCCcEEEecCCCceEEEEehhhc----------------------------cccceeecC-CceEEEEEec
Confidence            999999998 7778999999999999999873                            345667777 9999999999


Q ss_pred             cCCCCeEEEecCCCeEEEEEcCCCCcccccccC
Q 046394          231 RPYEDVLGIGHSMGVSGILIPGSGEPNFDSWVA  263 (378)
Q Consensus       231 sp~g~~l~~~~~~g~~~~~~~~s~d~~i~~w~~  263 (378)
                      ||...           .++++++.|.++++|+.
T Consensus       243 Sph~~-----------~lLaSasYDmT~riw~~  264 (311)
T KOG0277|consen  243 SPHHA-----------SLLASASYDMTVRIWDP  264 (311)
T ss_pred             Ccchh-----------hHhhhccccceEEeccc
Confidence            99864           45667777778888864

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.94  E-value=4.4e-27  Score=197.73  Aligned_cols=205  Identities=18%  Similarity=0.260  Sum_probs=171.1

Q ss_pred             CCceEEEEcCCCCEEEEEeCCCcEEEEeCCCCe-EEeeccCCCe-eEEEE-----EEEEEeCCCeEEEEEcCCCcEEEEE
Q 046394           46 LGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTE-LHCSKEHGEV-LKLQF-----LLASINKLGQLRYQNVTMGEIVGNF  118 (378)
Q Consensus        46 ~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~-~~l~~-----~l~s~~~d~~i~iwd~~~~~~~~~~  118 (378)
                      .+|..+.|.|+|+.|++|+..|.+.+|+..... ...+++|..+ .++.|     .+++|+.+|.|++|+..... +..+
T Consensus        97 c~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn-Vk~~  175 (464)
T KOG0284|consen   97 CPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN-VKII  175 (464)
T ss_pred             cceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhh-hHHh
Confidence            478999999999999999999999999954322 2456889887 99999     99999999999999985443 4444


Q ss_pred             ecC-CCCeeEEEEcCCCCEEEEEcCCCe--------------eeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCce
Q 046394          119 WTG-LGRTDVIRVNPFNGVVSLGHSGGT--------------MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYE  183 (378)
Q Consensus       119 ~~~-~~~v~~~~~s~~~~~l~~~~~d~~--------------~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~  183 (378)
                      ..| ...|.+++|+|....|+++++||.              +.+|.-.|.+++|+|.-.+++++|.|+.|++||.+++.
T Consensus       176 ~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~  255 (464)
T KOG0284|consen  176 QAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGS  255 (464)
T ss_pred             hHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcc
Confidence            444 489999999999999999999999              78999999999999998899999999999999999999


Q ss_pred             eeeee---cCCceEEEEecCCCcccc----------CCCCCceEEEeeccCCcceeeeEEcCCC-CeEEEecCCCeEEEE
Q 046394          184 VLQTL---PGHAKTLDFSRKDSGDFS----------GSHNYNRYMGYSMVKGYQIGKVSFRPYE-DVLGIGHSMGVSGIL  249 (378)
Q Consensus       184 ~~~~~---~~~i~~~~~sp~g~~~~~----------~~~~~~~~~~~~~~~~~~v~~~~~sp~g-~~l~~~~~~g~~~~~  249 (378)
                      ++.++   ...|..+.|+|++.+.+.          +.+....++.+++ |..-|+++.|+|-. .+|++|+.||.+.+|
T Consensus       256 cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~-Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~  334 (464)
T KOG0284|consen  256 CLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRG-HKKDVTSLTWHPLNESLFTSGGSDGSVVHW  334 (464)
T ss_pred             hhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhc-chhhheeeccccccccceeeccCCCceEEE
Confidence            99999   378999999999986443          4444444556667 88899999999976 466777777776666


Q ss_pred             EcC
Q 046394          250 IPG  252 (378)
Q Consensus       250 ~~~  252 (378)
                      ..+
T Consensus       335 ~v~  337 (464)
T KOG0284|consen  335 VVG  337 (464)
T ss_pred             ecc
Confidence            544

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.94  E-value=5.8e-25  Score=190.21  Aligned_cols=236  Identities=15%  Similarity=0.151  Sum_probs=182.7

Q ss_pred             ceeeEEEeccceeeeeecccceee----EEe-ecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEee-------
Q 046394           15 VEKTWRIKQEAIAREVDILSSRNQ----YDI-MLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTELHCS-------   82 (378)
Q Consensus        15 ~~~~~~~~~~~~i~~~d~~~~~~~----~~l-~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~-------   82 (378)
                      .-+++..+-|..|+.||+......    ..| ......|.++.||+.|..|++.+.....+|+|.+|..+..+       
T Consensus       179 GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI  258 (641)
T KOG0772|consen  179 GARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYI  258 (641)
T ss_pred             CceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhh
Confidence            567888899999999999655321    112 22334789999999999999888888999999888665332       


Q ss_pred             ------ccCCCe-eEEEE------EEEEEeCCCeEEEEEcCCCcE-EEEEec-----CCCCeeEEEEcCCCCEEEEEcCC
Q 046394           83 ------KEHGEV-LKLQF------LLASINKLGQLRYQNVTMGEI-VGNFWT-----GLGRTDVIRVNPFNGVVSLGHSG  143 (378)
Q Consensus        83 ------~~~~~~-~~l~~------~l~s~~~d~~i~iwd~~~~~~-~~~~~~-----~~~~v~~~~~s~~~~~l~~~~~d  143 (378)
                            ++|... ++.+|      .|+|++.||+++|||+...+. ...+..     ..-+++.++|+|+|.+||+|..|
T Consensus       259 ~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~D  338 (641)
T KOG0772|consen  259 RDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLD  338 (641)
T ss_pred             hhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccC
Confidence                  456655 88899      899999999999999986542 333332     23468899999999999999999


Q ss_pred             Ce-----------------eeecCC--CEEEEEEecCCCEEEEEECCCeEEEEEcCCc-eeeeee-----cCCceEEEEe
Q 046394          144 GT-----------------MLCHQG--PVSALAFHPNGHLMATSGKDCKIKIWDLRKY-EVLQTL-----PGHAKTLDFS  198 (378)
Q Consensus       144 ~~-----------------~~~h~~--~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~-~~~~~~-----~~~i~~~~~s  198 (378)
                      |.                 -.+|..  .|+||.||++|++|++-|.|+++++||++.. +++...     ..+-+.++||
T Consensus       339 GSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FS  418 (641)
T KOG0772|consen  339 GSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFS  418 (641)
T ss_pred             CceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccC
Confidence            98                 346776  8999999999999999999999999999984 456555     3567889999


Q ss_pred             cCCCc----------------cccCCCCCceEEEeeccCCcceeeeEEcCCCCeEEEecCCCeEEEEEc
Q 046394          199 RKDSG----------------DFSGSHNYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILIP  251 (378)
Q Consensus       199 p~g~~----------------~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~~  251 (378)
                      |+.+.                .+++..+...++.... ....|..+.|+|-=+.+.+|+.||.+.++..
T Consensus       419 Pd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i-~~aSvv~~~WhpkLNQi~~gsgdG~~~vyYd  486 (641)
T KOG0772|consen  419 PDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDI-STASVVRCLWHPKLNQIFAGSGDGTAHVYYD  486 (641)
T ss_pred             CCceEEEecccccCCCCCceEEEEeccceeeEEEecC-CCceEEEEeecchhhheeeecCCCceEEEEC
Confidence            98775                3334444444455544 5677889999999888888888888777653

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=3.8e-25  Score=189.23  Aligned_cols=198  Identities=16%  Similarity=0.230  Sum_probs=172.9

Q ss_pred             CCCCCCCeeecCCceeeEEEe-ccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeC------
Q 046394            2 LMPSEGGYLEAEGVEKTWRIK-QEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNR------   74 (378)
Q Consensus         2 ~~~~~~~~l~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~------   74 (378)
                      .+|....-|.+......+..+ -.+.+++|.+.+|..+..+..|-..|+|+.|+-||.+|++||.||.|.+|.+      
T Consensus        79 v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a  158 (476)
T KOG0646|consen   79 VLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSA  158 (476)
T ss_pred             ccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeeccc
Confidence            355555556655555555555 6899999999999999999999999999999999999999999999999983      


Q ss_pred             ----CCCeEEeeccCCCe-eEEEE-------EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcC
Q 046394           75 ----DGTELHCSKEHGEV-LKLQF-------LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHS  142 (378)
Q Consensus        75 ----~~~~~~~~~~~~~~-~~l~~-------~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  142 (378)
                          +-.+++.+..|.-+ +++..       .++|+|.|.++++||+..|..+.++. .+..+.+++.+|-+..+++|+.
T Consensus       159 ~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpae~~~yiGt~  237 (476)
T KOG0646|consen  159 DNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPAERVVYIGTE  237 (476)
T ss_pred             ccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEcccccEEEecCC
Confidence                23567888889865 77766       99999999999999999999888875 4688999999999999999999


Q ss_pred             CCe------------------------------eeecCC--CEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee--
Q 046394          143 GGT------------------------------MLCHQG--PVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL--  188 (378)
Q Consensus       143 d~~------------------------------~~~h~~--~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~--  188 (378)
                      +|.                              +.+|.+  +|+|++++-||.+|++|+.||.|+|||+.+.++++++  
T Consensus       238 ~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~  317 (476)
T KOG0646|consen  238 EGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQT  317 (476)
T ss_pred             cceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhh
Confidence            998                              678888  9999999999999999999999999999999999988  


Q ss_pred             -cCCceEEEEecC
Q 046394          189 -PGHAKTLDFSRK  200 (378)
Q Consensus       189 -~~~i~~~~~sp~  200 (378)
                       .++|+.+.+.|-
T Consensus       318 ~kgpVtnL~i~~~  330 (476)
T KOG0646|consen  318 SKGPVTNLQINPL  330 (476)
T ss_pred             hccccceeEeecc
Confidence             589999998664

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.93  E-value=1.2e-23  Score=208.14  Aligned_cols=216  Identities=14%  Similarity=0.137  Sum_probs=171.7

Q ss_pred             eeeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcC-CCCEEEEEeCCCcEEEEeC-CCCeEEeeccCCCeeEEEE
Q 046394           16 EKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTS-SGRYMAAAGCKGYPYFYNR-DGTELHCSKEHGEVLKLQF   93 (378)
Q Consensus        16 ~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp-~g~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~~~l~~   93 (378)
                      ...+..+.|+.|++||+.+++.+..+.+|...|++++|+| ++.+|++|+.||.|++||. .+..+..+..+..+.++.|
T Consensus       546 ~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~  625 (793)
T PLN00181        546 SQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQF  625 (793)
T ss_pred             CEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEE
Confidence            3455667799999999999999999999999999999997 7899999999999999994 5677777777666688887


Q ss_pred             ------EEEEEeCCCeEEEEEcCCCc-EEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe--------------------e
Q 046394           94 ------LLASINKLGQLRYQNVTMGE-IVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT--------------------M  146 (378)
Q Consensus        94 ------~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~--------------------~  146 (378)
                            +|++|+.|+.|++||++++. ++..+.+|...|.++.|. ++.+|++++.|+.                    +
T Consensus       626 ~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~  704 (793)
T PLN00181        626 PSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSF  704 (793)
T ss_pred             eCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEE
Confidence                  89999999999999998765 567778899999999997 7788999999887                    3


Q ss_pred             eecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeeecCCceEEEEecCCCccccCCCCCceEEEeeccCCccee
Q 046394          147 LCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHAKTLDFSRKDSGDFSGSHNYNRYMGYSMVKGYQIG  226 (378)
Q Consensus       147 ~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~~~~i~~~~~sp~g~~~~~~~~~~~~~~~~~~~~~~~v~  226 (378)
                      .+|...+.+++|+|++.+|++|+.|+.|+||+.....++..+       .+...+        ... -..... +...|.
T Consensus       705 ~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~-------~~~~~~--------~~~-~~~~~~-~~~~V~  767 (793)
T PLN00181        705 MGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSY-------KFKTID--------PVS-GLEVDD-ASQFIS  767 (793)
T ss_pred             cCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEE-------ecccCC--------ccc-ccccCC-CCcEEE
Confidence            457788899999999999999999999999998765544332       000000        000 001122 456799


Q ss_pred             eeEEcCCCCeEEEecCCCeEEEE
Q 046394          227 KVSFRPYEDVLGIGHSMGVSGIL  249 (378)
Q Consensus       227 ~~~~sp~g~~l~~~~~~g~~~~~  249 (378)
                      +++|+|++..|++|+.+|.+.+|
T Consensus       768 ~v~ws~~~~~lva~~~dG~I~i~  790 (793)
T PLN00181        768 SVCWRGQSSTLVAANSTGNIKIL  790 (793)
T ss_pred             EEEEcCCCCeEEEecCCCcEEEE
Confidence            99999999888877777765554

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=1.5e-24  Score=170.16  Aligned_cols=219  Identities=14%  Similarity=0.098  Sum_probs=184.8

Q ss_pred             ccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeeccCCCe-eEEEE-----EE
Q 046394           23 QEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKEHGEV-LKLQF-----LL   95 (378)
Q Consensus        23 ~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~-~~l~~-----~l   95 (378)
                      .+.++++|+...+..+.+..+|...|..++.+.|...+++|+.|..|.+|| .+|+.++.+++|.+. +.+.|     .+
T Consensus        37 sdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv  116 (307)
T KOG0316|consen   37 SDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVV  116 (307)
T ss_pred             CCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEE
Confidence            355677788999999999999999999999999999999999999999999 688899999999986 99999     99


Q ss_pred             EEEeCCCeEEEEEcCC--CcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe------------eeecCCCEEEEEEecC
Q 046394           96 ASINKLGQLRYQNVTM--GEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT------------MLCHQGPVSALAFHPN  161 (378)
Q Consensus        96 ~s~~~d~~i~iwd~~~--~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~------------~~~h~~~v~~~~~sp~  161 (378)
                      ++|+.|.++++||.++  .++++.+....+.|.++..+  +..|++|+.||.            ......+|+++.|+++
T Consensus       117 ~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~sDy~g~pit~vs~s~d  194 (307)
T KOG0316|consen  117 ASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLSSDYFGHPITSVSFSKD  194 (307)
T ss_pred             EeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCcEEEEEeecceeehhhcCCcceeEEecCC
Confidence            9999999999999986  46888888778888888765  567999999998            1123568999999999


Q ss_pred             CCEEEEEECCCeEEEEEcCCceeeeee--cC-------------CceEEEEecCCCccccCCCCCceEEEeeccCCcc-e
Q 046394          162 GHLMATSGKDCKIKIWDLRKYEVLQTL--PG-------------HAKTLDFSRKDSGDFSGSHNYNRYMGYSMVKGYQ-I  225 (378)
Q Consensus       162 g~~l~t~~~d~~i~iwd~~~~~~~~~~--~~-------------~i~~~~~sp~g~~~~~~~~~~~~~~~~~~~~~~~-v  225 (378)
                      |+..+.++.|++|++.|-.+|+++..+  |.             .-.-+.-|.||...+|+......+..+.. +... |
T Consensus       195 ~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~-~~~v~v  273 (307)
T KOG0316|consen  195 GNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSV-VSTVIV  273 (307)
T ss_pred             CCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeecc-CCceeE
Confidence            999999999999999999999998777  11             11223446788899999988888888876 5665 8


Q ss_pred             eeeEEcCCCCeEEEecCCC
Q 046394          226 GKVSFRPYEDVLGIGHSMG  244 (378)
Q Consensus       226 ~~~~~sp~g~~l~~~~~~g  244 (378)
                      ++++++|.-.-|.++...+
T Consensus       274 ~dl~~hp~~~~f~~A~~~~  292 (307)
T KOG0316|consen  274 TDLSCHPTMDDFITATGHG  292 (307)
T ss_pred             EeeecccCccceeEecCCc
Confidence            9999999987666666555

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.93  E-value=4.5e-26  Score=188.17  Aligned_cols=200  Identities=16%  Similarity=0.218  Sum_probs=173.0

Q ss_pred             CCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeeccCCCe-eEEEE---EEEEEeCCCeEEEEEcCCCcEEEEEe
Q 046394           45 ELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKEHGEV-LKLQF---LLASINKLGQLRYQNVTMGEIVGNFW  119 (378)
Q Consensus        45 ~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~-~~l~~---~l~s~~~d~~i~iwd~~~~~~~~~~~  119 (378)
                      ..+|+|+.+.  ...+++|..|.+|.||| .+-.++..+.+|++. .|+.|   .+++|+.|.+|++||+.+|+++.++-
T Consensus       197 skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~rviisGSSDsTvrvWDv~tge~l~tli  274 (499)
T KOG0281|consen  197 SKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDERVIVSGSSDSTVRVWDVNTGEPLNTLI  274 (499)
T ss_pred             CCceEEEEec--chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccceEEEecCCCceEEEEeccCCchhhHHh
Confidence            4689999986  44799999999999999 556778899999987 99999   99999999999999999999999999


Q ss_pred             cCCCCeeEEEEcCCCCEEEEEcCCCe-----------------eeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCc
Q 046394          120 TGLGRTDVIRVNPFNGVVSLGHSGGT-----------------MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKY  182 (378)
Q Consensus       120 ~~~~~v~~~~~s~~~~~l~~~~~d~~-----------------~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~  182 (378)
                      .|...|..+.|+  +.++++++.|..                 +.+|...|+.+.|+  .++++++|.|.+|++|++.++
T Consensus       275 hHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~  350 (499)
T KOG0281|consen  275 HHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTC  350 (499)
T ss_pred             hhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccce
Confidence            999999999987  568999999887                 78999999999996  559999999999999999999


Q ss_pred             eeeeee--c-CCceEEEE--------ecCCCccccCCCCCceEEEeeccCCcceeeeEEcCCCCeEEEecCCCeEEEEEc
Q 046394          183 EVLQTL--P-GHAKTLDF--------SRKDSGDFSGSHNYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILIP  251 (378)
Q Consensus       183 ~~~~~~--~-~~i~~~~~--------sp~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~~  251 (378)
                      ++++++  | ..|.|+.+        |.|..+.+|+...+.++..+.+ |..-|.++.|...              -+++
T Consensus       351 efvRtl~gHkRGIAClQYr~rlvVSGSSDntIRlwdi~~G~cLRvLeG-HEeLvRciRFd~k--------------rIVS  415 (499)
T KOG0281|consen  351 EFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEG-HEELVRCIRFDNK--------------RIVS  415 (499)
T ss_pred             eeehhhhcccccceehhccCeEEEecCCCceEEEEeccccHHHHHHhc-hHHhhhheeecCc--------------eeee
Confidence            999999  3 55666544        5566779999999999999999 9999999999643              2567


Q ss_pred             CCCCcccccccCCC
Q 046394          252 GSGEPNFDSWVANP  265 (378)
Q Consensus       252 ~s~d~~i~~w~~~~  265 (378)
                      |..|+.|++|+...
T Consensus       416 GaYDGkikvWdl~a  429 (499)
T KOG0281|consen  416 GAYDGKIKVWDLQA  429 (499)
T ss_pred             ccccceEEEEeccc
Confidence            77777888888644

>PTZ00420 coronin; Provisional

Probab=99.93  E-value=3.9e-23  Score=191.24  Aligned_cols=199  Identities=12%  Similarity=0.061  Sum_probs=150.7

Q ss_pred             cceeeeeecccceeeEEeecCCCCceEEEEcCC-CCEEEEEeCCCcEEEEeCC-C--------CeEEeeccCCCe-eEEE
Q 046394           24 EAIAREVDILSSRNQYDIMLPELGPYTLDFTSS-GRYMAAAGCKGYPYFYNRD-G--------TELHCSKEHGEV-LKLQ   92 (378)
Q Consensus        24 ~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~-g~~l~~~~~dg~i~iwd~~-~--------~~~~~~~~~~~~-~~l~   92 (378)
                      .+.+++|+......+..+.+|...|.+++|+|+ +.+||+|+.||.|+|||+. +        .++..+.+|... .+++
T Consensus        53 ~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVa  132 (568)
T PTZ00420         53 IGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIID  132 (568)
T ss_pred             eeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEE
Confidence            467899998888888899999999999999997 7899999999999999953 2        134467888875 9999


Q ss_pred             E------EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe--------------eeecCCC
Q 046394           93 F------LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT--------------MLCHQGP  152 (378)
Q Consensus        93 ~------~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~--------------~~~h~~~  152 (378)
                      |      ++++++.|++|+|||+.+++.+..+. +...|.+++|+|+|.+|++++.|+.              +.+|.+.
T Consensus       133 f~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~  211 (568)
T PTZ00420        133 WNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGG  211 (568)
T ss_pred             ECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCC
Confidence            9      56899999999999999998877775 5578999999999999999988876              5577776


Q ss_pred             EEEE-----EEecCCCEEEEEECCC----eEEEEEcCC-ceeeeeecCCceEEEEecCCCccccCCCCCceEEEeeccCC
Q 046394          153 VSAL-----AFHPNGHLMATSGKDC----KIKIWDLRK-YEVLQTLPGHAKTLDFSRKDSGDFSGSHNYNRYMGYSMVKG  222 (378)
Q Consensus       153 v~~~-----~~sp~g~~l~t~~~d~----~i~iwd~~~-~~~~~~~~~~i~~~~~sp~g~~~~~~~~~~~~~~~~~~~~~  222 (378)
                      +.+.     .|++++.+|+|++.|+    +|+|||+++ ..++..                           ..+.. +.
T Consensus       212 ~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~---------------------------~~ld~-~~  263 (568)
T PTZ00420        212 KNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVT---------------------------MSIDN-AS  263 (568)
T ss_pred             ceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEE---------------------------EEecC-Cc
Confidence            5432     3458888999888774    799999985 222211                           11211 22


Q ss_pred             cceeeeEEcCCCCeEEEecCCCeEEEEEc
Q 046394          223 YQIGKVSFRPYEDVLGIGHSMGVSGILIP  251 (378)
Q Consensus       223 ~~v~~~~~sp~g~~l~~~~~~g~~~~~~~  251 (378)
                      ..+......++|.++++|..|+.+++|-.
T Consensus       264 ~~L~p~~D~~tg~l~lsGkGD~tIr~~e~  292 (568)
T PTZ00420        264 APLIPHYDESTGLIYLIGKGDGNCRYYQH  292 (568)
T ss_pred             cceEEeeeCCCCCEEEEEECCCeEEEEEc
Confidence            33333444556877777777777777754

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.93  E-value=9.9e-24  Score=194.53  Aligned_cols=235  Identities=16%  Similarity=0.184  Sum_probs=196.9

Q ss_pred             ceeeEEEeccceeeeeecccceeeEE-eecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeeccCCCe-eEE
Q 046394           15 VEKTWRIKQEAIAREVDILSSRNQYD-IMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKEHGEV-LKL   91 (378)
Q Consensus        15 ~~~~~~~~~~~~i~~~d~~~~~~~~~-l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~-~~l   91 (378)
                      .+..+....+.+|++||..++..+.. +.+|.++|.++++...+.+|++|+.|.+++||| .+|.+.+++.+|... .++
T Consensus       218 ~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~  297 (537)
T KOG0274|consen  218 DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCL  297 (537)
T ss_pred             cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEE
Confidence            34566677789999999999999988 999999999999988778999999999999999 789999999999987 777


Q ss_pred             EE---EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe--------------eeecCCCEE
Q 046394           92 QF---LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT--------------MLCHQGPVS  154 (378)
Q Consensus        92 ~~---~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~--------------~~~h~~~v~  154 (378)
                      ..   .+++|+.|.+|++|++.++.++..+.+|.++|.++.++  +.++++|+.|+.              +.+|.+.|.
T Consensus       298 ~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~  375 (537)
T KOG0274|consen  298 TIDPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVY  375 (537)
T ss_pred             EccCceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEE
Confidence            77   88889999999999999999999999999999999999  899999999997              788999999


Q ss_pred             EEEEecCCCEEEEEECCCeEEEEEcCCc-eeeeee--c-CCceEEEE--------ecCCCccccCCCCCceEEEeeccCC
Q 046394          155 ALAFHPNGHLMATSGKDCKIKIWDLRKY-EVLQTL--P-GHAKTLDF--------SRKDSGDFSGSHNYNRYMGYSMVKG  222 (378)
Q Consensus       155 ~~~~sp~g~~l~t~~~d~~i~iwd~~~~-~~~~~~--~-~~i~~~~~--------sp~g~~~~~~~~~~~~~~~~~~~~~  222 (378)
                      ++.+.+. ..+++|+.|++|++||+++. +++.++  + .-+..+.+        +.||...+|+.....+.....+.|.
T Consensus       376 sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~  454 (537)
T KOG0274|consen  376 SLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLLRDNFLVSSSADGTIKLWDAEEGECLRTLEGRHV  454 (537)
T ss_pred             EEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCcccccccccccceeEeccccccEEEeecccCceeeeeccCCc
Confidence            9988765 79999999999999999999 899888  3 33333333        4577889999999999888876444


Q ss_pred             cceeeeEEcCCCCeEEEecCCCeEEEEEcCCCCcccccccCCCc
Q 046394          223 YQIGKVSFRPYEDVLGIGHSMGVSGILIPGSGEPNFDSWVANPF  266 (378)
Q Consensus       223 ~~v~~~~~sp~g~~l~~~~~~g~~~~~~~~s~d~~i~~w~~~~~  266 (378)
                      ..|+.+.+.  ...+            +..+.|+++.+|++...
T Consensus       455 ~~v~~l~~~--~~~i------------l~s~~~~~~~l~dl~~~  484 (537)
T KOG0274|consen  455 GGVSALALG--KEEI------------LCSSDDGSVKLWDLRSG  484 (537)
T ss_pred             ccEEEeecC--cceE------------EEEecCCeeEEEecccC
Confidence            567777765  2333            34445556666665443

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.93  E-value=3e-24  Score=179.30  Aligned_cols=208  Identities=15%  Similarity=0.187  Sum_probs=175.8

Q ss_pred             ecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEeeccCCCe-eEEEE--------EEEEEeCCCeEEEEEcCCC
Q 046394           42 MLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTELHCSKEHGEV-LKLQF--------LLASINKLGQLRYQNVTMG  112 (378)
Q Consensus        42 ~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~l~~--------~l~s~~~d~~i~iwd~~~~  112 (378)
                      ..|+..|.++...  +.+|++|++||.+++||..|.....+.+|.++ .+++|        .|++++.|.++++|-++.+
T Consensus       102 ~~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~  179 (423)
T KOG0313|consen  102 FLHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVG  179 (423)
T ss_pred             ccchhhhhhhccc--CceEEEeecCCeeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCc
Confidence            3567788888877  67999999999999999999999999999998 77777        6999999999999998876


Q ss_pred             cE----EEEEecCCCCeeEEEEcCCCCEEEEEcCCCe---------------------------------------eeec
Q 046394          113 EI----VGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT---------------------------------------MLCH  149 (378)
Q Consensus       113 ~~----~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~---------------------------------------~~~h  149 (378)
                      ..    +....+|...|.++...++|..+++|+.|..                                       +.+|
T Consensus       180 ~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GH  259 (423)
T KOG0313|consen  180 ENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGH  259 (423)
T ss_pred             hhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEeccc
Confidence            53    3334489999999999999999999999887                                       7899


Q ss_pred             CCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee--cCCceEEEEecCCCc----------cccCCCCC---ceE
Q 046394          150 QGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL--PGHAKTLDFSRKDSG----------DFSGSHNY---NRY  214 (378)
Q Consensus       150 ~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~--~~~i~~~~~sp~g~~----------~~~~~~~~---~~~  214 (378)
                      ..+|.++.|++ ...++++|.|.+|+.||+.++.++.++  ....+++.++|....          .+|+.+.+   .+.
T Consensus       260 t~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~  338 (423)
T KOG0313|consen  260 TEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVS  338 (423)
T ss_pred             ccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecCCCCCCCceeE
Confidence            99999999998 568999999999999999999998888  578899999886553          66766443   345


Q ss_pred             EEeeccCCcceeeeEEcCCCCeEEEecCCCeEEEEEcCCCCcccccccCC
Q 046394          215 MGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILIPGSGEPNFDSWVAN  264 (378)
Q Consensus       215 ~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~~~s~d~~i~~w~~~  264 (378)
                      +.+.+ |.+.|.++.|+|...           ..|++|+.|+++++||..
T Consensus       339 ~s~~g-H~nwVssvkwsp~~~-----------~~~~S~S~D~t~klWDvR  376 (423)
T KOG0313|consen  339 QSLIG-HKNWVSSVKWSPTNE-----------FQLVSGSYDNTVKLWDVR  376 (423)
T ss_pred             Eeeec-chhhhhheecCCCCc-----------eEEEEEecCCeEEEEEec
Confidence            66777 889999999999986           346677777777778753

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.93  E-value=2.7e-24  Score=179.50  Aligned_cols=203  Identities=13%  Similarity=0.188  Sum_probs=163.3

Q ss_pred             eEEEeccceeeeeecccceee----EEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeC-------------------
Q 046394           18 TWRIKQEAIAREVDILSSRNQ----YDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNR-------------------   74 (378)
Q Consensus        18 ~~~~~~~~~i~~~d~~~~~~~----~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~-------------------   74 (378)
                      ++..+.|.++.+|-+..+...    ....+|..+|-+++..++|..+++|+.|..|.||+.                   
T Consensus       162 fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~  241 (423)
T KOG0313|consen  162 FVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQ  241 (423)
T ss_pred             EEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhh
Confidence            344445555555555555432    233499999999999999999999999999999992                   


Q ss_pred             -------CCCeEEeeccCCCe-eEEEE----EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcC
Q 046394           75 -------DGTELHCSKEHGEV-LKLQF----LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHS  142 (378)
Q Consensus        75 -------~~~~~~~~~~~~~~-~~l~~----~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  142 (378)
                             .+.++.++.+|.++ .++.|    .+++++.|.+|+.||+.++..+.++.. ...++|+.++|...+|++|+.
T Consensus       242 ~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gss  320 (423)
T KOG0313|consen  242 KREKEGGTRTPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSS  320 (423)
T ss_pred             hhhhcccccCceEEecccccceeeEEEcCCCceEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCC
Confidence                   12356778999987 99999    999999999999999999999888764 478999999999999999999


Q ss_pred             CCe-----------------eeecCCCEEEEEEecC-CCEEEEEECCCeEEEEEcCCceeeeeecCCceEEEEecCCCcc
Q 046394          143 GGT-----------------MLCHQGPVSALAFHPN-GHLMATSGKDCKIKIWDLRKYEVLQTLPGHAKTLDFSRKDSGD  204 (378)
Q Consensus       143 d~~-----------------~~~h~~~v~~~~~sp~-g~~l~t~~~d~~i~iwd~~~~~~~~~~~~~i~~~~~sp~g~~~  204 (378)
                      |..                 +.+|++.|.++.|+|. ...|++++.|+++++||+|+                       
T Consensus       321 dr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS-----------------------  377 (423)
T KOG0313|consen  321 DRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRS-----------------------  377 (423)
T ss_pred             CCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEecc-----------------------
Confidence            987                 8899999999999995 45689999999999999997                       


Q ss_pred             ccCCCCCceEEEeeccCCcceeeeEEcCCCCeEEEecCCCeEEEEEcCCCCcccccccC
Q 046394          205 FSGSHNYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILIPGSGEPNFDSWVA  263 (378)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~~~s~d~~i~~w~~  263 (378)
                           ...+++...+ |...|.++.|... ..            +++|+.|.+++++..
T Consensus       378 -----~k~plydI~~-h~DKvl~vdW~~~-~~------------IvSGGaD~~l~i~~~  417 (423)
T KOG0313|consen  378 -----TKAPLYDIAG-HNDKVLSVDWNEG-GL------------IVSGGADNKLRIFKG  417 (423)
T ss_pred             -----CCCcceeecc-CCceEEEEeccCC-ce------------EEeccCcceEEEecc
Confidence                 4456667777 8889999999854 33            455556666666543

>PTZ00421 coronin; Provisional

Probab=99.93  E-value=5.4e-23  Score=189.31  Aligned_cols=143  Identities=15%  Similarity=0.126  Sum_probs=117.5

Q ss_pred             EeecCCCCceEEEEcC-CCCEEEEEeCCCcEEEEeCCC--------CeEEeeccCCCe-eEEEE------EEEEEeCCCe
Q 046394           40 DIMLPELGPYTLDFTS-SGRYMAAAGCKGYPYFYNRDG--------TELHCSKEHGEV-LKLQF------LLASINKLGQ  103 (378)
Q Consensus        40 ~l~~~~~~v~~~~~sp-~g~~l~~~~~dg~i~iwd~~~--------~~~~~~~~~~~~-~~l~~------~l~s~~~d~~  103 (378)
                      .+.+|.+.|.+++|+| ++++|++|+.||+|++||+..        .++..+.+|... .+++|      +|++++.|++
T Consensus        70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dgt  149 (493)
T PTZ00421         70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMV  149 (493)
T ss_pred             eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCE
Confidence            4789999999999999 889999999999999999532        346778899875 89999      7999999999


Q ss_pred             EEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe--------------eeecCCC-EEEEEEecCCCEEEEE
Q 046394          104 LRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT--------------MLCHQGP-VSALAFHPNGHLMATS  168 (378)
Q Consensus       104 i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~--------------~~~h~~~-v~~~~~sp~g~~l~t~  168 (378)
                      |+|||+.+++.+..+..|...|.+++|+|++.+|++++.|+.              +.+|.+. +..+.|+|++..++++
T Consensus       150 VrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~  229 (493)
T PTZ00421        150 VNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITL  229 (493)
T ss_pred             EEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEE
Confidence            999999999998888888888888888888888888888877              3456543 3456778877777665


Q ss_pred             E----CCCeEEEEEcCCc
Q 046394          169 G----KDCKIKIWDLRKY  182 (378)
Q Consensus       169 ~----~d~~i~iwd~~~~  182 (378)
                      +    .|+.|++||+++.
T Consensus       230 G~s~s~Dr~VklWDlr~~  247 (493)
T PTZ00421        230 GCSKSQQRQIMLWDTRKM  247 (493)
T ss_pred             ecCCCCCCeEEEEeCCCC
Confidence            4    3678888888763

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=5.7e-24  Score=173.66  Aligned_cols=209  Identities=15%  Similarity=0.199  Sum_probs=164.9

Q ss_pred             eeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeC-CCCeEEeeccCCCe-eEEEE-------EEEEEeCCCeEEEE
Q 046394           37 NQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNR-DGTELHCSKEHGEV-LKLQF-------LLASINKLGQLRYQ  107 (378)
Q Consensus        37 ~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~-~~l~~-------~l~s~~~d~~i~iw  107 (378)
                      ..|.+..|.+++++++.+  |.++|+||.|-+|+|||+ ....+..+-.|.+. +++.|       .|++|+.||.|.+|
T Consensus        35 ~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw  112 (362)
T KOG0294|consen   35 PLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIW  112 (362)
T ss_pred             ccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEE
Confidence            478889999999999987  889999999999999994 45567778888886 99999       79999999999999


Q ss_pred             EcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe-------------eeecCCCEEEEEEecCCCEEEEEECCCeE
Q 046394          108 NVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT-------------MLCHQGPVSALAFHPNGHLMATSGKDCKI  174 (378)
Q Consensus       108 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~-------------~~~h~~~v~~~~~sp~g~~l~t~~~d~~i  174 (378)
                      +.....++.++..|.+.|+.++++|.|++.++.+.|+.             ...-....+.+.|+|.|.+|+.++.++ |
T Consensus       113 ~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~-i  191 (362)
T KOG0294|consen  113 RVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRNK-I  191 (362)
T ss_pred             EcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEeccE-E
Confidence            99999999999999999999999999999999888887             111223335589999999988888665 8


Q ss_pred             EEEEcCCceeeeee--cCCceEEEEecCC---------CccccCCCCCceEEEeeccCCcceeeeEE--cCCCCeEEEec
Q 046394          175 KIWDLRKYEVLQTL--PGHAKTLDFSRKD---------SGDFSGSHNYNRYMGYSMVKGYQIGKVSF--RPYEDVLGIGH  241 (378)
Q Consensus       175 ~iwd~~~~~~~~~~--~~~i~~~~~sp~g---------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--sp~g~~l~~~~  241 (378)
                      -||.+.+..++..+  +..+.++.|-..+         ...+|+..+..++..+.+ |..+|.++.+  .|++.+|++++
T Consensus       192 ~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~A-H~~RVK~i~~~~~~~~~~lvTaS  270 (362)
T KOG0294|consen  192 DIYQLDNASVFREIENPKRILCATFLDGSELLVGGDNEWISLKDTDSDTPLTEFLA-HENRVKDIASYTNPEHEYLVTAS  270 (362)
T ss_pred             EEEecccHhHhhhhhccccceeeeecCCceEEEecCCceEEEeccCCCccceeeec-chhheeeeEEEecCCceEEEEec
Confidence            89998887776666  3445566554433         347778777888888888 9999999884  45565555555


Q ss_pred             CCCeEEEE
Q 046394          242 SMGVSGIL  249 (378)
Q Consensus       242 ~~g~~~~~  249 (378)
                      +||.+.+|
T Consensus       271 SDG~I~vW  278 (362)
T KOG0294|consen  271 SDGFIKVW  278 (362)
T ss_pred             cCceEEEE
Confidence            55543333

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.92  E-value=1.7e-23  Score=177.65  Aligned_cols=231  Identities=18%  Similarity=0.197  Sum_probs=190.9

Q ss_pred             eeeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeeccCCCe-eEEEE
Q 046394           16 EKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKEHGEV-LKLQF   93 (378)
Q Consensus        16 ~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~-~~l~~   93 (378)
                      .....+..|..+-++|..+++.+..+.+|.-.|+.+.|+|+...+++++.|-.|+||. ...........|.++ +.+..
T Consensus       232 ~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~  311 (506)
T KOG0289|consen  232 SKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSL  311 (506)
T ss_pred             CcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeee
Confidence            4555566666788899999999999999999999999999999999999999999999 444556667788776 77666


Q ss_pred             -----EEEEEeCCCeEEEEEcCCCcEEEEEecC--CCCeeEEEEcCCCCEEEEEcCCCe--------------eeecCCC
Q 046394           94 -----LLASINKLGQLRYQNVTMGEIVGNFWTG--LGRTDVIRVNPFNGVVSLGHSGGT--------------MLCHQGP  152 (378)
Q Consensus        94 -----~l~s~~~d~~i~iwd~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~d~~--------------~~~h~~~  152 (378)
                           +|++++.|+++.+.|++++..+......  .-.+++.+|+|||.+|.+|+.|+.              +.+|.++
T Consensus       312 h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~  391 (506)
T KOG0289|consen  312 HPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGP  391 (506)
T ss_pred             ccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCc
Confidence                 9999999999999999999988776643  345889999999999999999998              8899999


Q ss_pred             EEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee----cCCceEEEEecCCCccccCCCCCceEE------------E
Q 046394          153 VSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL----PGHAKTLDFSRKDSGDFSGSHNYNRYM------------G  216 (378)
Q Consensus       153 v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~----~~~i~~~~~sp~g~~~~~~~~~~~~~~------------~  216 (378)
                      |..++|+.+|.||++++.|+.|++||+|..+.+.++    ...+.++.|.+.|.+......+...+.            .
T Consensus       392 vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~  471 (506)
T KOG0289|consen  392 VKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKE  471 (506)
T ss_pred             eeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeeh
Confidence            999999999999999999999999999999888888    346999999999998665544443332            2


Q ss_pred             eeccCCcceeeeEEcCCCCeEEEecCCCeEE
Q 046394          217 YSMVKGYQIGKVSFRPYEDVLGIGHSMGVSG  247 (378)
Q Consensus       217 ~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~  247 (378)
                      +.. |.+..+.+.|.....+|++++.|...+
T Consensus       472 ~~~-~sg~st~v~Fg~~aq~l~s~smd~~l~  501 (506)
T KOG0289|consen  472 LAD-HSGLSTGVRFGEHAQYLASTSMDAILR  501 (506)
T ss_pred             hhh-cccccceeeecccceEEeeccchhheE
Confidence            222 555678888888886666666665433

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=1.6e-24  Score=198.43  Aligned_cols=139  Identities=17%  Similarity=0.199  Sum_probs=131.3

Q ss_pred             ecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeeccCCCe-eEEEE-----EEEEEeCCCeEEEEEcCCCcE
Q 046394           42 MLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKEHGEV-LKLQF-----LLASINKLGQLRYQNVTMGEI  114 (378)
Q Consensus        42 ~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~-~~l~~-----~l~s~~~d~~i~iwd~~~~~~  114 (378)
                      ...+..|.+++|+|...+|+++-.+|.|.+|| .-+..+..|..|.++ ..++|     +|++||+|..|++|+..+.++
T Consensus         6 EskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrc   85 (1202)
T KOG0292|consen    6 ESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRC   85 (1202)
T ss_pred             hcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEeccccee
Confidence            34456788999999999999999999999999 677888999999998 99999     999999999999999999999


Q ss_pred             EEEEecCCCCeeEEEEcCCCCEEEEEcCCCe--------------eeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcC
Q 046394          115 VGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT--------------MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLR  180 (378)
Q Consensus       115 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~--------------~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~  180 (378)
                      +.++.+|.+.|..+.|++.-.+|+++++|.+              +.||+..|.|.+|+|....++++|-|.+|||||+.
T Consensus        86 lftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDis  165 (1202)
T KOG0292|consen   86 LFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDIS  165 (1202)
T ss_pred             hhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeec
Confidence            9999999999999999999999999999998              88999999999999998999999999999999985

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.92  E-value=6.7e-23  Score=163.81  Aligned_cols=207  Identities=13%  Similarity=0.153  Sum_probs=176.8

Q ss_pred             EEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeeccCCCe-eEEEE-----EEEEEeCCCeEEEEEcCC
Q 046394           39 YDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKEHGEV-LKLQF-----LLASINKLGQLRYQNVTM  111 (378)
Q Consensus        39 ~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~-~~l~~-----~l~s~~~d~~i~iwd~~~  111 (378)
                      .-+.+|..+++-+.|+.+|.+|++|+.|..+.||- .+|..+-++.+|.+. .+++.     .++||+.|.++++||+.+
T Consensus         4 i~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~t   83 (327)
T KOG0643|consen    4 ILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVET   83 (327)
T ss_pred             cccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCC
Confidence            45788999999999999999999999999999999 699999999999987 77766     999999999999999999


Q ss_pred             CcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe--------------------------eeecCCCEEEEEEecCCCEE
Q 046394          112 GEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT--------------------------MLCHQGPVSALAFHPNGHLM  165 (378)
Q Consensus       112 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~--------------------------~~~h~~~v~~~~~sp~g~~l  165 (378)
                      |+.+.+++. ..+|..+.|+++|++++..+++..                          +..+...++.+-|.|-+.+|
T Consensus        84 Gk~la~~k~-~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~i  162 (327)
T KOG0643|consen   84 GKQLATWKT-NSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETI  162 (327)
T ss_pred             CcEEEEeec-CCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEE
Confidence            999999874 578999999999999888776654                          44566788999999999999


Q ss_pred             EEEECCCeEEEEEcCCceeeeee----cCCceEEEEecCCCc----------cccCCCCCceEEEeeccCCcceeeeEEc
Q 046394          166 ATSGKDCKIKIWDLRKYEVLQTL----PGHAKTLDFSRKDSG----------DFSGSHNYNRYMGYSMVKGYQIGKVSFR  231 (378)
Q Consensus       166 ~t~~~d~~i~iwd~~~~~~~~~~----~~~i~~~~~sp~g~~----------~~~~~~~~~~~~~~~~~~~~~v~~~~~s  231 (378)
                      ++|..||.|.+||+++|..+..-    ...|+.+++|||..+          .+++..+...+.++..  ..||++.+++
T Consensus       163 i~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~t--e~PvN~aais  240 (327)
T KOG0643|consen  163 IAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTT--ERPVNTAAIS  240 (327)
T ss_pred             EEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeee--cccccceecc
Confidence            99999999999999998664433    378999999999887          5566666677777753  6789999999


Q ss_pred             CCCCeEEEecCCCeEEE
Q 046394          232 PYEDVLGIGHSMGVSGI  248 (378)
Q Consensus       232 p~g~~l~~~~~~g~~~~  248 (378)
                      |....++.|+.....-+
T Consensus       241 P~~d~VilgGGqeA~dV  257 (327)
T KOG0643|consen  241 PLLDHVILGGGQEAMDV  257 (327)
T ss_pred             cccceEEecCCceeeee
Confidence            99888777766554333

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.92  E-value=4.6e-24  Score=173.88  Aligned_cols=182  Identities=15%  Similarity=0.198  Sum_probs=151.1

Q ss_pred             eEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCC-------------C------CeEEeeccCCCe-eEEEE----
Q 046394           38 QYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRD-------------G------TELHCSKEHGEV-LKLQF----   93 (378)
Q Consensus        38 ~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~-------------~------~~~~~~~~~~~~-~~l~~----   93 (378)
                      ...+..|...+.+.+|||||.++|+|+.|..|+|.|..             |      ..++++..|.+. +++.|    
T Consensus       105 t~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre  184 (430)
T KOG0640|consen  105 TKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRE  184 (430)
T ss_pred             eEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchh
Confidence            34577899999999999999999999999999999942             1      245778888876 99999    


Q ss_pred             -EEEEEeCCCeEEEEEcCCCcEEEEEe--cCCCCeeEEEEcCCCCEEEEEcCCCe-----------------eeecCCCE
Q 046394           94 -LLASINKLGQLRYQNVTMGEIVGNFW--TGLGRTDVIRVNPFNGVVSLGHSGGT-----------------MLCHQGPV  153 (378)
Q Consensus        94 -~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~d~~-----------------~~~h~~~v  153 (378)
                       +|++++.|++|+++|+......+.++  ....+|.++.|+|.|.+|++|.+...                 -..|.+.|
T Consensus       185 ~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai  264 (430)
T KOG0640|consen  185 TILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAI  264 (430)
T ss_pred             heEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccce
Confidence             99999999999999997543222222  23468999999999999999998776                 45689999


Q ss_pred             EEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee-----cCCceEEEEecCCCc----------cccCCCCCceEEEee
Q 046394          154 SALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL-----PGHAKTLDFSRKDSG----------DFSGSHNYNRYMGYS  218 (378)
Q Consensus       154 ~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~-----~~~i~~~~~sp~g~~----------~~~~~~~~~~~~~~~  218 (378)
                      +++.+++.|++.+|+|.||.|+|||--+++|+.++     ...|++..|+.+|++          .+|...++.++..+.
T Consensus       265 ~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~Yt  344 (430)
T KOG0640|consen  265 TQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYT  344 (430)
T ss_pred             eEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEe
Confidence            99999999999999999999999999999999999     367999999999986          556666666655554


Q ss_pred             c
Q 046394          219 M  219 (378)
Q Consensus       219 ~  219 (378)
                      +
T Consensus       345 G  345 (430)
T KOG0640|consen  345 G  345 (430)
T ss_pred             c
Confidence            4

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.92  E-value=2.3e-23  Score=177.88  Aligned_cols=215  Identities=14%  Similarity=0.214  Sum_probs=165.0

Q ss_pred             eccceeeeeeccccee----------eEEeecCCCCceEEEEcCCCC-EEEEEeCCCcEEEEeCCC--------CeEEee
Q 046394           22 KQEAIAREVDILSSRN----------QYDIMLPELGPYTLDFTSSGR-YMAAAGCKGYPYFYNRDG--------TELHCS   82 (378)
Q Consensus        22 ~~~~~i~~~d~~~~~~----------~~~l~~~~~~v~~~~~sp~g~-~l~~~~~dg~i~iwd~~~--------~~~~~~   82 (378)
                      ...+.+.|||......          -..|.+|...-++++|++... +|++|+.|+.|.+||++.        .+...+
T Consensus       144 t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~  223 (422)
T KOG0264|consen  144 TSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIF  223 (422)
T ss_pred             CCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEe
Confidence            4456777888754422          237889988889999999654 789999999999999533        234568


Q ss_pred             ccCCCe-eEEEE------EEEEEeCCCeEEEEEcC--CCcEEEEEecCCCCeeEEEEcCCC-CEEEEEcCCCe-------
Q 046394           83 KEHGEV-LKLQF------LLASINKLGQLRYQNVT--MGEIVGNFWTGLGRTDVIRVNPFN-GVVSLGHSGGT-------  145 (378)
Q Consensus        83 ~~~~~~-~~l~~------~l~s~~~d~~i~iwd~~--~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~d~~-------  145 (378)
                      .+|..+ ..++|      +|++++.|+.+.|||++  +.++......|.+.++|++|+|.+ .+||+|+.|++       
T Consensus       224 ~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlR  303 (422)
T KOG0264|consen  224 SGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLR  303 (422)
T ss_pred             ecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeech
Confidence            899887 88999      99999999999999999  556677777899999999999966 57888888888       


Q ss_pred             --------eeecCCCEEEEEEecC-CCEEEEEECCCeEEEEEcCCceeeeeecCCceEEEEecCCCccccCCCCCceEEE
Q 046394          146 --------MLCHQGPVSALAFHPN-GHLMATSGKDCKIKIWDLRKYEVLQTLPGHAKTLDFSRKDSGDFSGSHNYNRYMG  216 (378)
Q Consensus       146 --------~~~h~~~v~~~~~sp~-g~~l~t~~~d~~i~iwd~~~~~~~~~~~~~i~~~~~sp~g~~~~~~~~~~~~~~~  216 (378)
                              +.+|...|..|.|||+ ...||+++.|+.+.|||+..-.....-               .-......++++.
T Consensus       304 nL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~---------------eda~dgppEllF~  368 (422)
T KOG0264|consen  304 NLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSP---------------EDAEDGPPELLFI  368 (422)
T ss_pred             hcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccCh---------------hhhccCCcceeEE
Confidence                    7789999999999994 567889999999999998652111100               0001124567789


Q ss_pred             eeccCCcceeeeEEcCCCCeEEEecCCCeEEEEEcCCCCcccccccC
Q 046394          217 YSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILIPGSGEPNFDSWVA  263 (378)
Q Consensus       217 ~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~~~s~d~~i~~w~~  263 (378)
                      +.| |...|.++.|+|+..++           ++|.+.|+.+.+|..
T Consensus       369 HgG-H~~kV~DfsWnp~ePW~-----------I~SvaeDN~LqIW~~  403 (422)
T KOG0264|consen  369 HGG-HTAKVSDFSWNPNEPWT-----------IASVAEDNILQIWQM  403 (422)
T ss_pred             ecC-cccccccccCCCCCCeE-----------EEEecCCceEEEeec
Confidence            988 99999999999998744           445555666677754

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.92  E-value=2e-23  Score=195.67  Aligned_cols=217  Identities=14%  Similarity=0.133  Sum_probs=177.5

Q ss_pred             ceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCC-------------------CeEEeeccCCCe-eEEEE-
Q 046394           35 SRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDG-------------------TELHCSKEHGEV-LKLQF-   93 (378)
Q Consensus        35 ~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~-------------------~~~~~~~~~~~~-~~l~~-   93 (378)
                      ...+.++..|.+.|.|+.|+|||.+||+|+.|+.|.||....                   +.+..+.+|..- ..++| 
T Consensus        59 ~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Ws  138 (942)
T KOG0973|consen   59 PKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWS  138 (942)
T ss_pred             chhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccC
Confidence            345677888999999999999999999999999999999441                   245678899875 99999 


Q ss_pred             ----EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe--------------eee------c
Q 046394           94 ----LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT--------------MLC------H  149 (378)
Q Consensus        94 ----~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~--------------~~~------h  149 (378)
                          ++++++.|++|.|||..+...+..+.+|.+.|-.+.|.|-|++||+-++|++              +.+      -
T Consensus       139 p~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~  218 (942)
T KOG0973|consen  139 PDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPL  218 (942)
T ss_pred             CCccEEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCC
Confidence                9999999999999999999999999999999999999999999999999998              111      1


Q ss_pred             CCCEEEEEEecCCCEEEEEEC----CCeEEEEEcCCceeeeee---cCCceEEEEec-----------------------
Q 046394          150 QGPVSALAFHPNGHLMATSGK----DCKIKIWDLRKYEVLQTL---PGHAKTLDFSR-----------------------  199 (378)
Q Consensus       150 ~~~v~~~~~sp~g~~l~t~~~----d~~i~iwd~~~~~~~~~~---~~~i~~~~~sp-----------------------  199 (378)
                      ...+..+.|||||++|++...    -.++.|.+-.+.+.-..+   ..++.++.|+|                       
T Consensus       219 ~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~A  298 (942)
T KOG0973|consen  219 TTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAA  298 (942)
T ss_pred             cceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEE
Confidence            234678899999999998642    337889888777766666   37888888887                       


Q ss_pred             ----CCCccccCCCCCceEEEeeccCCcceeeeEEcCCCCeEEEecCCCeEEEEEc
Q 046394          200 ----KDSGDFSGSHNYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILIP  251 (378)
Q Consensus       200 ----~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~~  251 (378)
                          |+...+|......|+..........|.+++|+|||..|.+++.||.+.++-.
T Consensus       299 vgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~F  354 (942)
T KOG0973|consen  299 VGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHF  354 (942)
T ss_pred             EecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEc
Confidence                2223677776666665443225678999999999999999999998877653

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.92  E-value=3.2e-24  Score=180.85  Aligned_cols=231  Identities=16%  Similarity=0.094  Sum_probs=188.8

Q ss_pred             eeeEEEeccceeeeeecccce--eeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeC-CCCeEEeeccCCCe-eEE
Q 046394           16 EKTWRIKQEAIAREVDILSSR--NQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNR-DGTELHCSKEHGEV-LKL   91 (378)
Q Consensus        16 ~~~~~~~~~~~i~~~d~~~~~--~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~-~~l   91 (378)
                      +.+.+...|..|++|++...+  .+.+|.+..++|+++.|.+++.++++++.|+.+++|+. +....+++.+|.+- +++
T Consensus       188 dtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~a  267 (459)
T KOG0288|consen  188 DTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAA  267 (459)
T ss_pred             chhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeee
Confidence            445566677888888887666  67778888889999999999999999999999999995 56777899999986 888


Q ss_pred             EE-----EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe-------------eeecCCCE
Q 046394           92 QF-----LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT-------------MLCHQGPV  153 (378)
Q Consensus        92 ~~-----~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~-------------~~~h~~~v  153 (378)
                      .|     .+++|+.|.+|++||+....+..++- ....++.|..+  ...+++|..|..             ...-.+.|
T Consensus       268 k~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~v  344 (459)
T KOG0288|consen  268 KFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGGRV  344 (459)
T ss_pred             hhhccccceeeccccchhhhhhhhhhheecccc-ccccccceEec--ceeeeecccccceEEEeccCCceeeEeecCcce
Confidence            88     59999999999999999888877653 33556666665  556777777766             12234589


Q ss_pred             EEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee-------cCCceEEEEecCCCc----------cccCCCCCceEEE
Q 046394          154 SALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL-------PGHAKTLDFSRKDSG----------DFSGSHNYNRYMG  216 (378)
Q Consensus       154 ~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~-------~~~i~~~~~sp~g~~----------~~~~~~~~~~~~~  216 (378)
                      +++..+++|..+++++.|.++.+.|+++......+       ....+.+.|||++.|          .+|+..++.+...
T Consensus       345 tSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~  424 (459)
T KOG0288|consen  345 TSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKV  424 (459)
T ss_pred             eeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEE
Confidence            99999999999999999999999999998888777       245899999998886          7888888887777


Q ss_pred             eeccCCc-ceeeeEEcCCCCeEEEecCCCeEEEE
Q 046394          217 YSMVKGY-QIGKVSFRPYEDVLGIGHSMGVSGIL  249 (378)
Q Consensus       217 ~~~~~~~-~v~~~~~sp~g~~l~~~~~~g~~~~~  249 (378)
                      ....+.. .|+++.|+|.|..|++++.++.+.+|
T Consensus       425 l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW  458 (459)
T KOG0288|consen  425 LSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW  458 (459)
T ss_pred             eccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence            7663333 59999999999999888888876665

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=1.1e-22  Score=187.31  Aligned_cols=212  Identities=15%  Similarity=0.194  Sum_probs=172.4

Q ss_pred             ecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCC-CeEEeeccCCCe-eEEEE---EEEEEeCCCeEEEEEcCCCcEE
Q 046394           42 MLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDG-TELHCSKEHGEV-LKLQF---LLASINKLGQLRYQNVTMGEIV  115 (378)
Q Consensus        42 ~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~-~~~~~~~~~~~~-~~l~~---~l~s~~~d~~i~iwd~~~~~~~  115 (378)
                      .+|..+-+.|+|.|+|.+|++++.||.|++|+ ... .....+..+... .+++.   .|++|+.+++|.+|.+.+++.-
T Consensus        10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~~   89 (933)
T KOG1274|consen   10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFPSGEED   89 (933)
T ss_pred             hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecccceEEeeccceEEEeeCCCCCcc
Confidence            46888999999999999999999999999999 333 333444434443 66655   9999999999999999988765


Q ss_pred             EEEecCCCCeeEEEEcCCCCEEEEEcCCCe--------------eeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCC
Q 046394          116 GNFWTGLGRTDVIRVNPFNGVVSLGHSGGT--------------MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRK  181 (378)
Q Consensus       116 ~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~--------------~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~  181 (378)
                      ..+....-++.+++|+-+|.++|.|+.|-.              +.+|.++|.++.|+|++++||+.+.||.|+|||+.+
T Consensus        90 ~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~  169 (933)
T KOG1274|consen   90 TILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQD  169 (933)
T ss_pred             ceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEccc
Confidence            555555678999999999999999999876              789999999999999999999999999999999999


Q ss_pred             ceeeeee-----------cCCceEEEEecCCCc----------cccCCCCCceEEEeecc-CCcceeeeEEcCCCCeEEE
Q 046394          182 YEVLQTL-----------PGHAKTLDFSRKDSG----------DFSGSHNYNRYMGYSMV-KGYQIGKVSFRPYEDVLGI  239 (378)
Q Consensus       182 ~~~~~~~-----------~~~i~~~~~sp~g~~----------~~~~~~~~~~~~~~~~~-~~~~v~~~~~sp~g~~l~~  239 (378)
                      +.+..++           ...++.++|+|+|..          .+++.........+... +.+.+.+++|+|.|.|||+
T Consensus       170 ~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAA  249 (933)
T KOG1274|consen  170 GILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAA  249 (933)
T ss_pred             chhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEee
Confidence            9887777           134678999999553          44455555655555542 3344899999999999999


Q ss_pred             ecCCCeEEEEEcCC
Q 046394          240 GHSMGVSGILIPGS  253 (378)
Q Consensus       240 ~~~~g~~~~~~~~s  253 (378)
                      ++-+|.+.+|...+
T Consensus       250 s~~~g~I~vWnv~t  263 (933)
T KOG1274|consen  250 STLDGQILVWNVDT  263 (933)
T ss_pred             eccCCcEEEEeccc
Confidence            99999888887653

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=5.9e-23  Score=176.82  Aligned_cols=228  Identities=19%  Similarity=0.281  Sum_probs=190.9

Q ss_pred             EEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCC-CeEEeeccCCCe-eEEEE---
Q 046394           19 WRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDG-TELHCSKEHGEV-LKLQF---   93 (378)
Q Consensus        19 ~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~-~~l~~---   93 (378)
                      +.+...-.+.+|+..+......+......|++++|..||++||.|...|.|+|||... ..+..+.+|..+ ....|   
T Consensus        42 ~aVt~S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~  121 (487)
T KOG0310|consen   42 FAVTSSVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQ  121 (487)
T ss_pred             eEEecccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEeccc
Confidence            4455566788899888888877777778999999999999999999999999999433 356788999987 77777   


Q ss_pred             ---EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCC-EEEEEcCCCe--------------eeecCCCEEE
Q 046394           94 ---LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNG-VVSLGHSGGT--------------MLCHQGPVSA  155 (378)
Q Consensus        94 ---~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~d~~--------------~~~h~~~v~~  155 (378)
                         .+++|++|+.+++||+.+......+.+|.+.|.|.+|+|-+. .+++|+.||.              -..|..+|.+
T Consensus       122 d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~  201 (487)
T KOG0310|consen  122 DNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVES  201 (487)
T ss_pred             CCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceee
Confidence               899999999999999999887778999999999999999765 8999999998              3468889999


Q ss_pred             EEEecCCCEEEEEECCCeEEEEEcCCc-eeeeee---cCCceEEEEecCCCc----------cccCCCCCceEEEeeccC
Q 046394          156 LAFHPNGHLMATSGKDCKIKIWDLRKY-EVLQTL---PGHAKTLDFSRKDSG----------DFSGSHNYNRYMGYSMVK  221 (378)
Q Consensus       156 ~~~sp~g~~l~t~~~d~~i~iwd~~~~-~~~~~~---~~~i~~~~~sp~g~~----------~~~~~~~~~~~~~~~~~~  221 (378)
                      +.+-|.|..+++++. +.|+|||+.+| +.+..+   +..|+|+.+..++..          .+++..+.+.+..+..  
T Consensus       202 vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~--  278 (487)
T KOG0310|consen  202 VLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKY--  278 (487)
T ss_pred             EEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeec--
Confidence            999999999999984 56999999964 445544   478999999887654          5566666677777765  


Q ss_pred             CcceeeeEEcCCCCeEEEecCCCeEEEE
Q 046394          222 GYQIGKVSFRPYEDVLGIGHSMGVSGIL  249 (378)
Q Consensus       222 ~~~v~~~~~sp~g~~l~~~~~~g~~~~~  249 (378)
                      .++|.+++.+|+++.+++|..+|.+.+-
T Consensus       279 ~~pvLsiavs~dd~t~viGmsnGlv~~r  306 (487)
T KOG0310|consen  279 PGPVLSIAVSPDDQTVVIGMSNGLVSIR  306 (487)
T ss_pred             ccceeeEEecCCCceEEEecccceeeee
Confidence            6789999999999999999999976544

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=4.1e-23  Score=168.95  Aligned_cols=233  Identities=15%  Similarity=0.148  Sum_probs=187.3

Q ss_pred             EEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeC-------------------------
Q 046394           20 RIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNR-------------------------   74 (378)
Q Consensus        20 ~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~-------------------------   74 (378)
                      ..+.|.+.++|.++++.++..+.+|.+.|++|.|++.+.++++++.|++..||..                         
T Consensus       165 tASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sD  244 (481)
T KOG0300|consen  165 TASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSD  244 (481)
T ss_pred             ecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhccc
Confidence            3456788899999999999999999999999999999999999999999999961                         


Q ss_pred             ------------CC----CeEEeeccCCCe-eEEEE-----EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcC
Q 046394           75 ------------DG----TELHCSKEHGEV-LKLQF-----LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNP  132 (378)
Q Consensus        75 ------------~~----~~~~~~~~~~~~-~~l~~-----~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~  132 (378)
                                  ++    .++..+.+|.++ .+..|     .+++++.|.+..+||+++|.++..+.+|....+.++-+|
T Consensus       245 e~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHp  324 (481)
T KOG0300|consen  245 EHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHP  324 (481)
T ss_pred             ccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCC
Confidence                        00    134567888887 78888     999999999999999999999999999999999999999


Q ss_pred             CCCEEEEEcCCCe---------------eeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCc-eeeeee--cCCceE
Q 046394          133 FNGVVSLGHSGGT---------------MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKY-EVLQTL--PGHAKT  194 (378)
Q Consensus       133 ~~~~l~~~~~d~~---------------~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~-~~~~~~--~~~i~~  194 (378)
                      ...++++++.|.+               +.+|...|+++.|.-+. .+++|+.|.+|+|||+++. .++.++  .++++.
T Consensus       325 tQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NR  403 (481)
T KOG0300|consen  325 TQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRSPLATIRTDSPANR  403 (481)
T ss_pred             cceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCC-ceeecCCCceEEEeeeccccCcceeeecCCccce
Confidence            9999999999988               88999999999998765 6899999999999999984 457777  578888


Q ss_pred             EEEecCCCc----------cccCCCCCce----EEEeeccCCcceeeeEEcCCCCeEEEecCCCeEEEEEcCCCCccccc
Q 046394          195 LDFSRKDSG----------DFSGSHNYNR----YMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILIPGSGEPNFDS  260 (378)
Q Consensus       195 ~~~sp~g~~----------~~~~~~~~~~----~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~~~s~d~~i~~  260 (378)
                      ++.+..+.+          .+++.....+    ...-.+ |...|+|++|..+-..          +-+++.+.|..+.-
T Consensus       404 vavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqg-HrRMV~c~AW~eehp~----------cnLftcGFDR~v~g  472 (481)
T KOG0300|consen  404 VAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQG-HRRMVTCCAWLEEHPA----------CNLFTCGFDRMVAG  472 (481)
T ss_pred             eEeecCCceEEeccCCceEEEEecCCCccccCCcccccc-cceeeeeeeccccCcc----------cccccccccceeee
Confidence            888776653          3344332221    112234 7778999999866421          22345555666666


Q ss_pred             ccCC
Q 046394          261 WVAN  264 (378)
Q Consensus       261 w~~~  264 (378)
                      |.++
T Consensus       473 W~in  476 (481)
T KOG0300|consen  473 WKIN  476 (481)
T ss_pred             eEec
Confidence            7654

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.90  E-value=1.8e-22  Score=189.34  Aligned_cols=210  Identities=15%  Similarity=0.184  Sum_probs=168.3

Q ss_pred             CCCceEEEEcCCCCEEEEEe--CCCcEEEEeCC-------------CCeEEeeccCCCe-eEEEE-----EEEEEeCCCe
Q 046394           45 ELGPYTLDFTSSGRYMAAAG--CKGYPYFYNRD-------------GTELHCSKEHGEV-LKLQF-----LLASINKLGQ  103 (378)
Q Consensus        45 ~~~v~~~~~sp~g~~l~~~~--~dg~i~iwd~~-------------~~~~~~~~~~~~~-~~l~~-----~l~s~~~d~~  103 (378)
                      ...|++++.+|+|..+|||+  .||.++||+..             ...+.++..|.+. +|+.|     +||+|++|..
T Consensus        13 ~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~   92 (942)
T KOG0973|consen   13 EKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRL   92 (942)
T ss_pred             CeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcce
Confidence            34588999999999999999  79999999832             1234567778887 99999     9999999999


Q ss_pred             EEEEEcCC------------------CcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe--------------eeecCC
Q 046394          104 LRYQNVTM------------------GEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT--------------MLCHQG  151 (378)
Q Consensus       104 i~iwd~~~------------------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~--------------~~~h~~  151 (378)
                      |.||....                  -+.+..+.+|.+.|..++|+|++.++++++.|+.              +.+|.+
T Consensus        93 v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s  172 (942)
T KOG0973|consen   93 VMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQS  172 (942)
T ss_pred             EEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeecccc
Confidence            99998762                  1257778899999999999999999999999998              789999


Q ss_pred             CEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee---------cCCceEEEEecCCCcccc--------------CC
Q 046394          152 PVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL---------PGHAKTLDFSRKDSGDFS--------------GS  208 (378)
Q Consensus       152 ~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~---------~~~i~~~~~sp~g~~~~~--------------~~  208 (378)
                      .|-.+.|.|-|+|||+-+.|++|+||.+.+..+.+.+         ......+.|||||.+...              ..
T Consensus       173 ~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR  252 (942)
T KOG0973|consen  173 LVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIER  252 (942)
T ss_pred             cccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEec
Confidence            9999999999999999999999999998887676666         235688999999997332              23


Q ss_pred             CCCceEEEeeccCCcceeeeEEcCC--------C-----C----eEEEecCCCeEEEEEcCCCC
Q 046394          209 HNYNRYMGYSMVKGYQIGKVSFRPY--------E-----D----VLGIGHSMGVSGILIPGSGE  255 (378)
Q Consensus       209 ~~~~~~~~~~~~~~~~v~~~~~sp~--------g-----~----~l~~~~~~g~~~~~~~~s~d  255 (378)
                      .+...-..+-+ |..++.+++|+|.        |     .    .+|+|+.|+.+.+|.++.--
T Consensus       253 ~tWk~~~~LvG-H~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~R  315 (942)
T KOG0973|consen  253 GTWKVDKDLVG-HSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPR  315 (942)
T ss_pred             CCceeeeeeec-CCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCC
Confidence            33344445666 8889999999982        1     1    45666677766666554433

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.90  E-value=2.4e-21  Score=158.74  Aligned_cols=210  Identities=16%  Similarity=0.171  Sum_probs=162.7

Q ss_pred             eecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeeccCC-CeeEEEE-----EEEEEeC--CCeEEEEEcCC
Q 046394           41 IMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKEHG-EVLKLQF-----LLASINK--LGQLRYQNVTM  111 (378)
Q Consensus        41 l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~-~~~~l~~-----~l~s~~~--d~~i~iwd~~~  111 (378)
                      +..-...|.++.|+++|.+|++++.|.+++||| .++..++++..+. ++..+.|     .++.++.  |.+|++.++.+
T Consensus        10 f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~d   89 (311)
T KOG1446|consen   10 FRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHD   89 (311)
T ss_pred             cccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeec
Confidence            333457899999999999999999999999999 7888888887765 4577777     4444444  89999999999


Q ss_pred             CcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe-----ee--e-----cCCCEEEEEEecCCCEEEEEECCCeEEEEEc
Q 046394          112 GEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT-----ML--C-----HQGPVSALAFHPNGHLMATSGKDCKIKIWDL  179 (378)
Q Consensus       112 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~-----~~--~-----h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~  179 (378)
                      .+.++.|.+|...|+.++.+|-+..+++++.|.+     +.  .     +...-..++|.|+|-++|++.....|+|||+
T Consensus        90 NkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA~~~~~~~IkLyD~  169 (311)
T KOG1446|consen   90 NKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFALANGSELIKLYDL  169 (311)
T ss_pred             CceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcceeECCCCcEEEEecCCCeEEEEEe
Confidence            9999999999999999999999999999999987     11  1     1223345799999999999998889999999


Q ss_pred             CCc--eeeeee------cCCceEEEEecCCCcccc----------CCCCCceEEEeeccCCc---ceeeeEEcCCCCeEE
Q 046394          180 RKY--EVLQTL------PGHAKTLDFSRKDSGDFS----------GSHNYNRYMGYSMVKGY---QIGKVSFRPYEDVLG  238 (378)
Q Consensus       180 ~~~--~~~~~~------~~~i~~~~~sp~g~~~~~----------~~~~~~~~~~~~~~~~~---~v~~~~~sp~g~~l~  238 (378)
                      |+.  .+..++      ....+.+.|||||++.+.          +.-++.....+.+ +..   --.+.+|+||++++.
T Consensus       170 Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~-~~~~~~~~~~a~ftPds~Fvl  248 (311)
T KOG1446|consen  170 RSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSG-YPNAGNLPLSATFTPDSKFVL  248 (311)
T ss_pred             cccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEee-ccCCCCcceeEEECCCCcEEE
Confidence            984  345555      357899999999997333          2333344444443 221   125778999998888


Q ss_pred             EecCCCeEEEEEc
Q 046394          239 IGHSMGVSGILIP  251 (378)
Q Consensus       239 ~~~~~g~~~~~~~  251 (378)
                      +|++||.+.+|--
T Consensus       249 ~gs~dg~i~vw~~  261 (311)
T KOG1446|consen  249 SGSDDGTIHVWNL  261 (311)
T ss_pred             EecCCCcEEEEEc
Confidence            7777777766654

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=2.4e-21  Score=151.42  Aligned_cols=242  Identities=17%  Similarity=0.163  Sum_probs=179.1

Q ss_pred             CCeeecCCceeeEEEeccceeeeeecccc-----ee----eEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCC-
Q 046394            7 GGYLEAEGVEKTWRIKQEAIAREVDILSS-----RN----QYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDG-   76 (378)
Q Consensus         7 ~~~l~~~~~~~~~~~~~~~~i~~~d~~~~-----~~----~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~-   76 (378)
                      -|+.+.++..+++++.+-..  +.|+..+     +.    ...-+.|.+.|+|.+|||+|.+||+|+.|.+|++...+. 
T Consensus        44 g~lyavgsnskt~ric~yp~--l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~d  121 (350)
T KOG0641|consen   44 GGLYAVGSNSKTFRICAYPA--LIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNAD  121 (350)
T ss_pred             CceEEeccCCceEEEEcccc--ccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCCceEEEEecccc
Confidence            56667777888898887322  2223111     11    122346789999999999999999999999999987422 


Q ss_pred             -----CeEEeeccCCCe-eEEEE---------EEEEEe-CCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEE
Q 046394           77 -----TELHCSKEHGEV-LKLQF---------LLASIN-KLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLG  140 (378)
Q Consensus        77 -----~~~~~~~~~~~~-~~l~~---------~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  140 (378)
                           ..-..+.-|.+. ..++|         ++++++ .|..|++-|..+|+..+.+.+|.+.|.++ ++-+|-.|++|
T Consensus       122 t~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilal-yswn~~m~~sg  200 (350)
T KOG0641|consen  122 TCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILAL-YSWNGAMFASG  200 (350)
T ss_pred             cccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEE-EEecCcEEEcc
Confidence                 112346667776 99999         666655 47889999999999999999999988775 45568899999


Q ss_pred             cCCCe------------------eee---cCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee--c-CCceEEE
Q 046394          141 HSGGT------------------MLC---HQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL--P-GHAKTLD  196 (378)
Q Consensus       141 ~~d~~------------------~~~---h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~--~-~~i~~~~  196 (378)
                      +.|.+                  +.+   ....|.+++..|.|++|++|-.|.+..+||++.+++++.+  | ..|.++.
T Consensus       201 sqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vr  280 (350)
T KOG0641|consen  201 SQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVR  280 (350)
T ss_pred             CCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEE
Confidence            99987                  111   1357899999999999999999999999999999999999  3 7899999


Q ss_pred             EecCCCccccCCC--------------CCceEEEeeccCCcceeeeEEcCCCCeEEEecCCCeEEEEEcCCCCccccccc
Q 046394          197 FSRKDSGDFSGSH--------------NYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILIPGSGEPNFDSWV  262 (378)
Q Consensus       197 ~sp~g~~~~~~~~--------------~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~~~s~d~~i~~w~  262 (378)
                      |||...+.+....              ...++..... |...+-.+.|+|..            .-|++.|.|.+..+|-
T Consensus       281 fsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~e-hkdk~i~~rwh~~d------------~sfisssadkt~tlwa  347 (350)
T KOG0641|consen  281 FSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAE-HKDKAIQCRWHPQD------------FSFISSSADKTATLWA  347 (350)
T ss_pred             eCCCceEEEEecccceEEEeecccchhhcCceEEEEe-ccCceEEEEecCcc------------ceeeeccCcceEEEec
Confidence            9998776332211              1223334434 77778889999998            4455666666666775


Q ss_pred             CC
Q 046394          263 AN  264 (378)
Q Consensus       263 ~~  264 (378)
                      .+
T Consensus       348 ~~  349 (350)
T KOG0641|consen  348 LN  349 (350)
T ss_pred             cC
Confidence            43

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.90  E-value=7.2e-21  Score=155.94  Aligned_cols=233  Identities=14%  Similarity=0.080  Sum_probs=191.2

Q ss_pred             ceeeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeC--CCcEEEEe-CCCCeEEeeccCCCe-eE
Q 046394           15 VEKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGC--KGYPYFYN-RDGTELHCSKEHGEV-LK   90 (378)
Q Consensus        15 ~~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~--dg~i~iwd-~~~~~~~~~~~~~~~-~~   90 (378)
                      .+..+.-++|+.+++||..++..+.++..+..+|..++|....+.++.++.  |.+|+..+ .+.+.++.+.||... ++
T Consensus        26 G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~s  105 (311)
T KOG1446|consen   26 GLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNS  105 (311)
T ss_pred             CCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCceEEEcCCCCceEEE
Confidence            444555567889999999999999999999999999999887777777766  88999999 677889999999986 88


Q ss_pred             EEE-----EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe------------------e-
Q 046394           91 LQF-----LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT------------------M-  146 (378)
Q Consensus        91 l~~-----~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~------------------~-  146 (378)
                      ++.     .+++++.|++|++||++..++...+..  ..-..++|+|.|-++|++.....                  + 
T Consensus       106 L~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~--~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~  183 (311)
T KOG1446|consen  106 LSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNL--SGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSIT  183 (311)
T ss_pred             EEecCCCCeEEecccCCeEEeeEecCCCCceEEec--CCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccC
Confidence            888     999999999999999998887766543  34456899999999999988744                  1 


Q ss_pred             eecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee--c----CCceEEEEecCCCc----------cccCCCC
Q 046394          147 LCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL--P----GHAKTLDFSRKDSG----------DFSGSHN  210 (378)
Q Consensus       147 ~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~--~----~~i~~~~~sp~g~~----------~~~~~~~  210 (378)
                      .+.....+.|.|||+|++++.++..+.+.+.|.-+|..+.++  +    ...-..+|+|||++          .+|+..+
T Consensus       184 ~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~t  263 (311)
T KOG1446|consen  184 DNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLET  263 (311)
T ss_pred             CCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCC
Confidence            133566889999999999999999999999999999998888  2    12257889998775          7888888


Q ss_pred             CceEEEeeccCCcceeeeEEcCCCCeEEEecCCCeEEEEEc
Q 046394          211 YNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILIP  251 (378)
Q Consensus       211 ~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~~  251 (378)
                      +..+..+.+++..++.++.|+|.-.++++++..=  .+|++
T Consensus       264 g~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s~l--~fw~p  302 (311)
T KOG1446|consen  264 GKKVAVLRGPNGGPVSCVRFNPRYAMFVSASSNL--VFWLP  302 (311)
T ss_pred             CcEeeEecCCCCCCccccccCCceeeeeecCceE--EEEec
Confidence            9999999886789999999999876666655442  44443

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.90  E-value=6e-23  Score=162.95  Aligned_cols=201  Identities=14%  Similarity=0.193  Sum_probs=160.0

Q ss_pred             eeeEEEeccceeeeeecccc-eeeEEeecCCCCceEEEEcCC-CCEEEEEeCCCcEEEEe-CCCCeEEeeccCCCe-eEE
Q 046394           16 EKTWRIKQEAIAREVDILSS-RNQYDIMLPELGPYTLDFTSS-GRYMAAAGCKGYPYFYN-RDGTELHCSKEHGEV-LKL   91 (378)
Q Consensus        16 ~~~~~~~~~~~i~~~d~~~~-~~~~~l~~~~~~v~~~~~sp~-g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~-~~l   91 (378)
                      +..+..+.||.+++||+... .++..++.|...|+++.|++- +..++++|-||+|++|+ .....+.++.+|... ...
T Consensus        74 ~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a  153 (311)
T KOG0277|consen   74 NQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQA  153 (311)
T ss_pred             ceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEE
Confidence            34566677999999996544 457778899999999999985 45678889999999999 556778999999987 888


Q ss_pred             EE------EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCC-CEEEEEcCCCe---------------eeec
Q 046394           92 QF------LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFN-GVVSLGHSGGT---------------MLCH  149 (378)
Q Consensus        92 ~~------~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~d~~---------------~~~h  149 (378)
                      .|      ++++++.|+++++||++..-....+..|...+.|+.|+.-. ..+++|+.|+.               +.+|
T Consensus       154 ~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh  233 (311)
T KOG0277|consen  154 AFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGH  233 (311)
T ss_pred             ecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCC
Confidence            88      99999999999999998754444588899999999999865 68888988887               7889


Q ss_pred             CCCEEEEEEec-CCCEEEEEECCCeEEEEEcCCceeeeeecCCceEEEEecCCCccccCCCCCceEEEeeccCCcceeee
Q 046394          150 QGPVSALAFHP-NGHLMATSGKDCKIKIWDLRKYEVLQTLPGHAKTLDFSRKDSGDFSGSHNYNRYMGYSMVKGYQIGKV  228 (378)
Q Consensus       150 ~~~v~~~~~sp-~g~~l~t~~~d~~i~iwd~~~~~~~~~~~~~i~~~~~sp~g~~~~~~~~~~~~~~~~~~~~~~~v~~~  228 (378)
                      .-.|..+.||| ....|++++.|-+++|||.....                            ..+..... |+.-|..+
T Consensus       234 ~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~d----------------------------s~~e~~~~-HtEFv~g~  284 (311)
T KOG0277|consen  234 GLAVRKVKFSPHHASLLASASYDMTVRIWDPERQD----------------------------SAIETVDH-HTEFVCGL  284 (311)
T ss_pred             ceEEEEEecCcchhhHhhhccccceEEecccccch----------------------------hhhhhhhc-cceEEecc
Confidence            99999999999 45679999999999999986532                            12222223 77778999


Q ss_pred             EEcCCC-CeEEEecCCCe
Q 046394          229 SFRPYE-DVLGIGHSMGV  245 (378)
Q Consensus       229 ~~sp~g-~~l~~~~~~g~  245 (378)
                      .||+.. .++|+++-|+.
T Consensus       285 Dws~~~~~~vAs~gWDe~  302 (311)
T KOG0277|consen  285 DWSLFDPGQVASTGWDEL  302 (311)
T ss_pred             ccccccCceeeecccccc
Confidence            999864 34444444443

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.90  E-value=3.5e-22  Score=172.10  Aligned_cols=191  Identities=12%  Similarity=0.145  Sum_probs=165.4

Q ss_pred             cceeeeeecccceeeEEeecCCCCceEEEEcCCCC-EEEEEeCCCcEEEEeCCCCeE-EeeccCCCe-eEEEE------E
Q 046394           24 EAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGR-YMAAAGCKGYPYFYNRDGTEL-HCSKEHGEV-LKLQF------L   94 (378)
Q Consensus        24 ~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~-~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~-~~l~~------~   94 (378)
                      .|.|+++|..+..-+..+..|+.+|..+.|+|.+. .+++|+.|+.+++||.++..+ ..+.+|++. .+.+|      +
T Consensus        89 sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hi  168 (487)
T KOG0310|consen   89 SGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHI  168 (487)
T ss_pred             cCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeE
Confidence            58899999877777788999999999999999765 677788888999999766554 478999986 88888      8


Q ss_pred             EEEEeCCCeEEEEEcCCC-cEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe--------------eeecCCCEEEEEEe
Q 046394           95 LASINKLGQLRYQNVTMG-EIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT--------------MLCHQGPVSALAFH  159 (378)
Q Consensus        95 l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~--------------~~~h~~~v~~~~~s  159 (378)
                      ++|||.||.|++||+++. ..+.++ .|..+|..+.+-|.|+.|++++.+..              +..|...|+|+++.
T Consensus       169 vvtGsYDg~vrl~DtR~~~~~v~el-nhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~  247 (487)
T KOG0310|consen  169 VVTGSYDGKVRLWDTRSLTSRVVEL-NHGCPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLA  247 (487)
T ss_pred             EEecCCCceEEEEEeccCCceeEEe-cCCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCceehhhhhcccceEEEEEee
Confidence            999999999999999986 566666 58899999999999999999988776              44599999999999


Q ss_pred             cCCCEEEEEECCCeEEEEEcCCceeeeee--cCCceEEEEecCCCccccCCCCCceEE
Q 046394          160 PNGHLMATSGKDCKIKIWDLRKYEVLQTL--PGHAKTLDFSRKDSGDFSGSHNYNRYM  215 (378)
Q Consensus       160 p~g~~l~t~~~d~~i~iwd~~~~~~~~~~--~~~i~~~~~sp~g~~~~~~~~~~~~~~  215 (378)
                      .++..|+++|-|+.|++||+.+.+.++.+  +++|-+++.+|++...+.+..++....
T Consensus       248 s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd~t~viGmsnGlv~~  305 (487)
T KOG0310|consen  248 SDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYPGPVLSIAVSPDDQTVVIGMSNGLVSI  305 (487)
T ss_pred             cCCceEeecccccceEEEEccceEEEEeeecccceeeEEecCCCceEEEecccceeee
Confidence            99999999999999999999999999988  899999999999988777665555443

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.89  E-value=1.5e-21  Score=178.14  Aligned_cols=235  Identities=16%  Similarity=0.151  Sum_probs=187.8

Q ss_pred             ceeeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeeccCCC-eeEEE
Q 046394           15 VEKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKEHGE-VLKLQ   92 (378)
Q Consensus        15 ~~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~-~~~l~   92 (378)
                      ..+.+.+.+++.+.+||+.+++.++++.++...|+++.-+|-=..+|.|..+|+|.|++ ..++.+..++..-+ ++.++
T Consensus       172 LNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslS  251 (910)
T KOG1539|consen  172 LNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLS  251 (910)
T ss_pred             eeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEE
Confidence            67888889999999999999999999999999999999999888999999999999999 56777788877634 59999


Q ss_pred             E------EEEEEeCCCeEEEEEcCCCcEEEEEe-cCCCCeeEEEEcCCCCEEEEEcCC----------------------
Q 046394           93 F------LLASINKLGQLRYQNVTMGEIVGNFW-TGLGRTDVIRVNPFNGVVSLGHSG----------------------  143 (378)
Q Consensus        93 ~------~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~d----------------------  143 (378)
                      |      ++++|+..|.+.+||++..+.+..+. .|.+.+....|-|....+++++.|                      
T Consensus       252 FrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~  331 (910)
T KOG1539|consen  252 FRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRG  331 (910)
T ss_pred             eccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeecc
Confidence            9      89999999999999998766554443 344555555555544444444444                      


Q ss_pred             -------------------------Ce-----------------------------------------------------
Q 046394          144 -------------------------GT-----------------------------------------------------  145 (378)
Q Consensus       144 -------------------------~~-----------------------------------------------------  145 (378)
                                               ++                                                     
T Consensus       332 GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W  411 (910)
T KOG1539|consen  332 GHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEW  411 (910)
T ss_pred             CCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhh
Confidence                                     32                                                     


Q ss_pred             --------------------------------------------------------------------------e---ee
Q 046394          146 --------------------------------------------------------------------------M---LC  148 (378)
Q Consensus       146 --------------------------------------------------------------------------~---~~  148 (378)
                                                                                                +   ..
T Consensus       412 ~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~a  491 (910)
T KOG1539|consen  412 DNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPA  491 (910)
T ss_pred             cceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCcc
Confidence                                                                                      2   46


Q ss_pred             cCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee--cCCceEEEEecCCC----------ccccCCCCCceEEE
Q 046394          149 HQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL--PGHAKTLDFSRKDS----------GDFSGSHNYNRYMG  216 (378)
Q Consensus       149 h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~--~~~i~~~~~sp~g~----------~~~~~~~~~~~~~~  216 (378)
                      |.++|++++...-++.+++++.+|.+.+||.....++..+  ..+++++..+....          +.+.+..+...+..
T Consensus       492 h~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~  571 (910)
T KOG1539|consen  492 HKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVRE  571 (910)
T ss_pred             ccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHH
Confidence            8888999999888888999999999999999888887777  56777777766443          25566677777888


Q ss_pred             eeccCCcceeeeEEcCCCCeEEEecCCCeEEEEE
Q 046394          217 YSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILI  250 (378)
Q Consensus       217 ~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~  250 (378)
                      +.+ |+..|++++|||||++|++++.|+.+++|.
T Consensus       572 f~g-h~nritd~~FS~DgrWlisasmD~tIr~wD  604 (910)
T KOG1539|consen  572 FWG-HGNRITDMTFSPDGRWLISASMDSTIRTWD  604 (910)
T ss_pred             hhc-cccceeeeEeCCCCcEEEEeecCCcEEEEe
Confidence            888 999999999999998877777777666654

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.89  E-value=5.2e-22  Score=168.64  Aligned_cols=205  Identities=18%  Similarity=0.230  Sum_probs=176.7

Q ss_pred             CCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeeccCCCe-eEEEE-----EEEEEeCCCeEEEEEcCCCcEEEEE
Q 046394           46 LGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKEHGEV-LKLQF-----LLASINKLGQLRYQNVTMGEIVGNF  118 (378)
Q Consensus        46 ~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~-~~l~~-----~l~s~~~d~~i~iwd~~~~~~~~~~  118 (378)
                      .++.++...|....+++|+.|..+.++| ..++.+..+.||... +.+.|     .+++++.|..|+||...........
T Consensus       220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~  299 (506)
T KOG0289|consen  220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSS  299 (506)
T ss_pred             CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcccc
Confidence            4678888888778999999999999999 667788899999875 88888     8889999999999999888888888


Q ss_pred             ecCCCCeeEEEEcCCCCEEEEEcCCCe-----------eeecC-----CCEEEEEEecCCCEEEEEECCCeEEEEEcCCc
Q 046394          119 WTGLGRTDVIRVNPFNGVVSLGHSGGT-----------MLCHQ-----GPVSALAFHPNGHLMATSGKDCKIKIWDLRKY  182 (378)
Q Consensus       119 ~~~~~~v~~~~~s~~~~~l~~~~~d~~-----------~~~h~-----~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~  182 (378)
                      ..|..+|+.+..+|.|.||++++.|+.           +..|.     -.+++.+|+|||..|++|..|+.|+|||+.++
T Consensus       300 ~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~  379 (506)
T KOG0289|consen  300 RPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQ  379 (506)
T ss_pred             ccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCc
Confidence            899999999999999999999999998           22222     24899999999999999999999999999999


Q ss_pred             eeeeee--c-CCceEEEEecCCCc----------cccCCCCCceEEEeeccCCcceeeeEEcCCCCeEEEecCCCeEEEE
Q 046394          183 EVLQTL--P-GHAKTLDFSRKDSG----------DFSGSHNYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGIL  249 (378)
Q Consensus       183 ~~~~~~--~-~~i~~~~~sp~g~~----------~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~  249 (378)
                      ..+..|  | ++|..++|+.+|.+          .+|+.+....+.++.......|.++.|.+.|.+|++++.+=.+.++
T Consensus       380 ~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~  459 (506)
T KOG0289|consen  380 TNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYIC  459 (506)
T ss_pred             cccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEE
Confidence            988888  3 89999999999886          6788777777777776556679999999999999999776654444


Q ss_pred             E
Q 046394          250 I  250 (378)
Q Consensus       250 ~  250 (378)
                      .
T Consensus       460 ~  460 (506)
T KOG0289|consen  460 K  460 (506)
T ss_pred             e
Confidence            3

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.89  E-value=2.7e-22  Score=181.51  Aligned_cols=198  Identities=19%  Similarity=0.273  Sum_probs=165.4

Q ss_pred             ceEEEEcC-CCCEEEEEeCCCcEEEEeCCC----CeEEeeccCCCe-eEEEE------EEEEEeCCCeEEEEEcCCCcEE
Q 046394           48 PYTLDFTS-SGRYMAAAGCKGYPYFYNRDG----TELHCSKEHGEV-LKLQF------LLASINKLGQLRYQNVTMGEIV  115 (378)
Q Consensus        48 v~~~~~sp-~g~~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~-~~l~~------~l~s~~~d~~i~iwd~~~~~~~  115 (378)
                      +..+.|.. +.++|||++..|.|.+||+..    ..+..|..|... ++++|      +|++||.||+|++||++.....
T Consensus        90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~  169 (839)
T KOG0269|consen   90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSK  169 (839)
T ss_pred             hhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccc
Confidence            34566763 457999999999999999543    445678889876 99999      9999999999999999998888


Q ss_pred             EEEecCCCCeeEEEEcCC-CCEEEEEcCCCe---------------eeecCCCEEEEEEecCCCEEEEEECCCeEEEEEc
Q 046394          116 GNFWTGLGRTDVIRVNPF-NGVVSLGHSGGT---------------MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDL  179 (378)
Q Consensus       116 ~~~~~~~~~v~~~~~s~~-~~~l~~~~~d~~---------------~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~  179 (378)
                      .++......|..+.|+|. +..|+++.+.|.               +.+|.++|.|+.|+|++.+|||||.|+.|+|||+
T Consensus       170 ~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~  249 (839)
T KOG0269|consen  170 STFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDM  249 (839)
T ss_pred             ccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEec
Confidence            888888899999999995 568888888887               7899999999999999999999999999999999


Q ss_pred             CCcee--eeee--cCCceEEEEecCCCc-------------cccCCC-CCceEEEeeccCCcceeeeEEcC-CCCeEEEe
Q 046394          180 RKYEV--LQTL--PGHAKTLDFSRKDSG-------------DFSGSH-NYNRYMGYSMVKGYQIGKVSFRP-YEDVLGIG  240 (378)
Q Consensus       180 ~~~~~--~~~~--~~~i~~~~~sp~g~~-------------~~~~~~-~~~~~~~~~~~~~~~v~~~~~sp-~g~~l~~~  240 (378)
                      .+.+.  +.++  ..++.++.|-|...+             .+|+.. .--|+.++.. |...++.++|.. |-..|.++
T Consensus       250 t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~e-H~~~vt~i~W~~~d~~~l~s~  328 (839)
T KOG0269|consen  250 TDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLE-HTDSVTGIAWDSGDRINLWSC  328 (839)
T ss_pred             cCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeec-cCccccceeccCCCceeeEee
Confidence            86544  5555  589999999998775             677754 4456777877 899999999976 33577788


Q ss_pred             cCCCeE
Q 046394          241 HSMGVS  246 (378)
Q Consensus       241 ~~~g~~  246 (378)
                      +.||.+
T Consensus       329 sKD~tv  334 (839)
T KOG0269|consen  329 SKDGTV  334 (839)
T ss_pred             cCccHH
Confidence            888854

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.89  E-value=2.8e-21  Score=157.13  Aligned_cols=215  Identities=9%  Similarity=0.065  Sum_probs=165.9

Q ss_pred             cceeeeeecccc-e-eeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEeeccCCCe-eEEEE-------
Q 046394           24 EAIAREVDILSS-R-NQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTELHCSKEHGEV-LKLQF-------   93 (378)
Q Consensus        24 ~~~i~~~d~~~~-~-~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~l~~-------   93 (378)
                      |++|++|+++.. . .......|.++|.+++|+.||..+++|+.|+.+++||+....+..+..|.++ ..+.|       
T Consensus        49 D~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~  128 (347)
T KOG0647|consen   49 DGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQVAAHDAPVKTCHWVPGMNYQ  128 (347)
T ss_pred             CCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCeeeeeecccceeEEEEecCCCcc
Confidence            677778888763 2 2244566889999999999999999999999999999766688888999887 78888       


Q ss_pred             EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe------------eee----cCCCEEEEE
Q 046394           94 LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT------------MLC----HQGPVSALA  157 (378)
Q Consensus        94 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~------------~~~----h~~~v~~~~  157 (378)
                      .|+||+.|.+|++||++...++.++.. ++.+.++..-  ...++++..++.            +..    .+-.+.||+
T Consensus       129 cl~TGSWDKTlKfWD~R~~~pv~t~~L-PeRvYa~Dv~--~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va  205 (347)
T KOG0647|consen  129 CLVTGSWDKTLKFWDTRSSNPVATLQL-PERVYAADVL--YPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVA  205 (347)
T ss_pred             eeEecccccceeecccCCCCeeeeeec-cceeeehhcc--CceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEE
Confidence            789999999999999999999888763 3445544332  233444444433            222    234578999


Q ss_pred             EecCCCEEEEEECCCeEEEEEcCCceee--eee--cC----------CceEEEEec----------CCCccccCCCCCce
Q 046394          158 FHPNGHLMATSGKDCKIKIWDLRKYEVL--QTL--PG----------HAKTLDFSR----------KDSGDFSGSHNYNR  213 (378)
Q Consensus       158 ~sp~g~~l~t~~~d~~i~iwd~~~~~~~--~~~--~~----------~i~~~~~sp----------~g~~~~~~~~~~~~  213 (378)
                      ..++....+.|+.+|.+-|..+..+.+.  .+|  |.          .|++|+|+|          ||.+.+|+......
T Consensus       206 ~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~k  285 (347)
T KOG0647|consen  206 CFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTK  285 (347)
T ss_pred             EEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhh
Confidence            9998888899999999999988876332  233  21          468899998          67789999888887


Q ss_pred             EEEeeccCCcceeeeEEcCCCCeEEEecC
Q 046394          214 YMGYSMVKGYQIGKVSFRPYEDVLGIGHS  242 (378)
Q Consensus       214 ~~~~~~~~~~~v~~~~~sp~g~~l~~~~~  242 (378)
                      +..... |..+|++.+|+.+|.++|.+..
T Consensus       286 Lk~s~~-~~qpItcc~fn~~G~ifaYA~g  313 (347)
T KOG0647|consen  286 LKTSET-HPQPITCCSFNRNGSIFAYALG  313 (347)
T ss_pred             hhccCc-CCCccceeEecCCCCEEEEEee
Confidence            877777 8999999999999998876544

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.89  E-value=7.7e-20  Score=161.13  Aligned_cols=228  Identities=9%  Similarity=0.083  Sum_probs=163.1

Q ss_pred             EEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEE-EEEeCCCcEEEEeC-CCCeEEeeccCCCeeEEEE---
Q 046394           19 WRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYM-AAAGCKGYPYFYNR-DGTELHCSKEHGEVLKLQF---   93 (378)
Q Consensus        19 ~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l-~~~~~dg~i~iwd~-~~~~~~~~~~~~~~~~l~~---   93 (378)
                      +....++.+.+||+.+++.+..+..+ ..+.+++|+|+|..+ ++++.++.|++||. ++..+..+..+..+..+.|   
T Consensus         5 ~s~~~d~~v~~~d~~t~~~~~~~~~~-~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~   83 (300)
T TIGR03866         5 VSNEKDNTISVIDTATLEVTRTFPVG-QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPELFALHPN   83 (300)
T ss_pred             EEecCCCEEEEEECCCCceEEEEECC-CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCccEEEECCC
Confidence            34456889999999999888888876 457889999999876 56677899999995 4555566666555566667   


Q ss_pred             ---EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe--------------eeecCCCEEEE
Q 046394           94 ---LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT--------------MLCHQGPVSAL  156 (378)
Q Consensus        94 ---~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~--------------~~~h~~~v~~~  156 (378)
                         ++++++.|+.|.+||+.+++.+..+.. ...+.+++|+|++.++++++.++.              .......+.++
T Consensus        84 g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  162 (300)
T TIGR03866        84 GKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQRPRFA  162 (300)
T ss_pred             CCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCCccEE
Confidence               445566789999999998888777753 245688999999999998877653              01122345678


Q ss_pred             EEecCCCEEEEE-ECCCeEEEEEcCCceeeeee--cC--------CceEEEEecCCCc-----------cccCCCCCceE
Q 046394          157 AFHPNGHLMATS-GKDCKIKIWDLRKYEVLQTL--PG--------HAKTLDFSRKDSG-----------DFSGSHNYNRY  214 (378)
Q Consensus       157 ~~sp~g~~l~t~-~~d~~i~iwd~~~~~~~~~~--~~--------~i~~~~~sp~g~~-----------~~~~~~~~~~~  214 (378)
                      +|+|+|++|+++ ..++.|.+||+.+++.+..+  +.        ....++|+|+|.+           .+|+..+....
T Consensus       163 ~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~  242 (300)
T TIGR03866       163 EFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVL  242 (300)
T ss_pred             EECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEE
Confidence            999999988544 46999999999998877655  11        2356889999875           23344444443


Q ss_pred             EEeeccCCcceeeeEEcCCCCeEEEec-CCCeEEEEE
Q 046394          215 MGYSMVKGYQIGKVSFRPYEDVLGIGH-SMGVSGILI  250 (378)
Q Consensus       215 ~~~~~~~~~~v~~~~~sp~g~~l~~~~-~~g~~~~~~  250 (378)
                      ....  ++..+.+++|+|+|.+|+++. .+|.+.+|.
T Consensus       243 ~~~~--~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d  277 (300)
T TIGR03866       243 DYLL--VGQRVWQLAFTPDEKYLLTTNGVSNDVSVID  277 (300)
T ss_pred             EEEE--eCCCcceEEECCCCCEEEEEcCCCCeEEEEE
Confidence            3322  345688999999998776553 345444443

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>PTZ00421 coronin; Provisional

Probab=99.89  E-value=2.9e-20  Score=171.34  Aligned_cols=191  Identities=14%  Similarity=0.086  Sum_probs=151.9

Q ss_pred             eeeEEEeccceeeeeecccc-------eeeEEeecCCCCceEEEEcCCC-CEEEEEeCCCcEEEEeC-CCCeEEeeccCC
Q 046394           16 EKTWRIKQEAIAREVDILSS-------RNQYDIMLPELGPYTLDFTSSG-RYMAAAGCKGYPYFYNR-DGTELHCSKEHG   86 (378)
Q Consensus        16 ~~~~~~~~~~~i~~~d~~~~-------~~~~~l~~~~~~v~~~~~sp~g-~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~   86 (378)
                      ...+..+.|+.|++||+.++       ..+..+.+|...|.+++|+|++ ++|++|+.|+.|+|||+ ++..+..+.+|.
T Consensus        89 ~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~  168 (493)
T PTZ00421         89 QKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHS  168 (493)
T ss_pred             CEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCC
Confidence            35667778899999999765       3467789999999999999986 69999999999999994 566778888888


Q ss_pred             Ce-eEEEE-----EEEEEeCCCeEEEEEcCCCcEEEEEecCCCC-eeEEEEcCCCCEEEEEcC----CCe----------
Q 046394           87 EV-LKLQF-----LLASINKLGQLRYQNVTMGEIVGNFWTGLGR-TDVIRVNPFNGVVSLGHS----GGT----------  145 (378)
Q Consensus        87 ~~-~~l~~-----~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~-v~~~~~s~~~~~l~~~~~----d~~----------  145 (378)
                      .. .+++|     +|++++.|++|++||+++++.+..+..|.+. +..+.|.+++..+++++.    |+.          
T Consensus       169 ~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~  248 (493)
T PTZ00421        169 DQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMA  248 (493)
T ss_pred             CceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCC
Confidence            75 99999     8999999999999999999999888888754 456789998887776553    333          


Q ss_pred             -----ee-ecCCCEEEEEEecCCCEEEEEE-CCCeEEEEEcCCceeeeee----cCCceEEEEecCCCcccc
Q 046394          146 -----ML-CHQGPVSALAFHPNGHLMATSG-KDCKIKIWDLRKYEVLQTL----PGHAKTLDFSRKDSGDFS  206 (378)
Q Consensus       146 -----~~-~h~~~v~~~~~sp~g~~l~t~~-~d~~i~iwd~~~~~~~~~~----~~~i~~~~~sp~g~~~~~  206 (378)
                           .. .+...+....|+|++++|++++ .|+.|++||+.++.++..+    ..+...++|.|.-..++-
T Consensus       249 ~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk~~~dv~  320 (493)
T PTZ00421        249 SPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPKWSLDTR  320 (493)
T ss_pred             CceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEeccccccccc
Confidence                 11 1223455667899999998887 5999999999998877655    356788888886554433

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.88  E-value=1.6e-21  Score=166.92  Aligned_cols=229  Identities=17%  Similarity=0.200  Sum_probs=185.1

Q ss_pred             eeecCCceeeEEEeccceeeeeecccceee-EE---------------e--ecCCCCceEEEEcCCCCEEEEEeCCCcEE
Q 046394            9 YLEAEGVEKTWRIKQEAIAREVDILSSRNQ-YD---------------I--MLPELGPYTLDFTSSGRYMAAAGCKGYPY   70 (378)
Q Consensus         9 ~l~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~~---------------l--~~~~~~v~~~~~sp~g~~l~~~~~dg~i~   70 (378)
                      ...+....+.|..+.+++|--|++.++... ..               .  ..|...+.+++.||||+|||+|+.|..|.
T Consensus       148 vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylatgg~d~~v~  227 (479)
T KOG0299|consen  148 VALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLATGGRDRHVQ  227 (479)
T ss_pred             EEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEecCCCceEE
Confidence            344445667788888888888999888743 11               1  26777889999999999999999999999


Q ss_pred             EEe-CCCCeEEeeccCCCe-eEEEE-----EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCC
Q 046394           71 FYN-RDGTELHCSKEHGEV-LKLQF-----LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSG  143 (378)
Q Consensus        71 iwd-~~~~~~~~~~~~~~~-~~l~~-----~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d  143 (378)
                      ||+ .+...++.+.+|.+. .+++|     .+++++.|.+|++|++.....+.++-+|.+.|..|....-+..+.+|+.|
T Consensus       228 Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrD  307 (479)
T KOG0299|consen  228 IWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRD  307 (479)
T ss_pred             EecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhcccceEEecccc
Confidence            999 567888899999987 99999     89999999999999999888888898999999999999999999999999


Q ss_pred             Ce-------------eeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee---cCCceEEEEecCCCccccC
Q 046394          144 GT-------------MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL---PGHAKTLDFSRKDSGDFSG  207 (378)
Q Consensus       144 ~~-------------~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~~sp~g~~~~~~  207 (378)
                      ++             +.+|.+.+-|++|-.+ ..|+|||.+|.|.+|++.+.+++++.   |+-...+            
T Consensus       308 rT~rlwKi~eesqlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~------------  374 (479)
T KOG0299|consen  308 RTVRLWKIPEESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPEL------------  374 (479)
T ss_pred             ceeEEEeccccceeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeeecccCceeEeeccccccCCc------------
Confidence            88             6788889999999754 57999999999999999998888776   2221111            


Q ss_pred             CCCCceEEEeeccCCcceeeeEEcCCCCeEEEecCCCeEEEEEcCCCCcccc
Q 046394          208 SHNYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILIPGSGEPNFD  259 (378)
Q Consensus       208 ~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~~~s~d~~i~  259 (378)
                          .++.     +...|++|+..|...++|+|+.+|.+++|....+-..|.
T Consensus       375 ----~~~~-----~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~  417 (479)
T KOG0299|consen  375 ----DPVN-----GNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAIN  417 (479)
T ss_pred             ----cccc-----cccceeeeEecccCceEEecCCCCceEEEEecCCccccc
Confidence                0110     224699999999998888888888777777665544333

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.88  E-value=1.7e-22  Score=165.74  Aligned_cols=231  Identities=13%  Similarity=0.135  Sum_probs=185.9

Q ss_pred             eeEEEeccceeeeeecccceeeEE--------eecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeec-cCC
Q 046394           17 KTWRIKQEAIAREVDILSSRNQYD--------IMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSK-EHG   86 (378)
Q Consensus        17 ~~~~~~~~~~i~~~d~~~~~~~~~--------l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~-~~~   86 (378)
                      -.+..+-|+.|.+||..+|+....        +..++.+|.|++||.|...||+|+.||.|+||. .+|.+++.+. +|+
T Consensus       227 yLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHt  306 (508)
T KOG0275|consen  227 YLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHT  306 (508)
T ss_pred             eEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhc
Confidence            345566789999999999875443        445778999999999999999999999999999 7889998886 777


Q ss_pred             C-eeEEEE-----EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe---------------
Q 046394           87 E-VLKLQF-----LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT---------------  145 (378)
Q Consensus        87 ~-~~~l~~-----~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~---------------  145 (378)
                      . ++++.|     .+++++.|.++++.-+.+|+++..|.+|...|+...|+++|..+++++.||+               
T Consensus       307 kGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tf  386 (508)
T KOG0275|consen  307 KGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTF  386 (508)
T ss_pred             cCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhc
Confidence            5 599999     8999999999999999999999999999999999999999999999999998               


Q ss_pred             -eeecCCCEEEEEEec-CCCEEEEEECCCeEEEEEcCCceeeeee------cCCceEEEEecCCCccc----------cC
Q 046394          146 -MLCHQGPVSALAFHP-NGHLMATSGKDCKIKIWDLRKYEVLQTL------PGHAKTLDFSRKDSGDF----------SG  207 (378)
Q Consensus       146 -~~~h~~~v~~~~~sp-~g~~l~t~~~d~~i~iwd~~~~~~~~~~------~~~i~~~~~sp~g~~~~----------~~  207 (378)
                       ..+...+|.++-.-| +...++.|...++|.|-++ .|+.++++      .+...+.+.||.|.+..          +.
T Consensus       387 k~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~-qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~  465 (508)
T KOG0275|consen  387 KPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNM-QGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFS  465 (508)
T ss_pred             cCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEec-cceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEE
Confidence             223456788888877 5667999999999999988 57888888      35567788899888632          23


Q ss_pred             CCCCceEEEeeccCCcceeeeEEcCCCCeEEEecCCCeEEEE
Q 046394          208 SHNYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGIL  249 (378)
Q Consensus       208 ~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~  249 (378)
                      ...+.....+.. |...|-.++-+|..+.||+-+.||...+|
T Consensus       466 ~~sG~LE~tl~V-hEkdvIGl~HHPHqNllAsYsEDgllKLW  506 (508)
T KOG0275|consen  466 VLSGKLERTLPV-HEKDVIGLTHHPHQNLLASYSEDGLLKLW  506 (508)
T ss_pred             eecCceeeeeec-ccccccccccCcccchhhhhcccchhhhc
Confidence            333344444444 66677888999998766666666644433

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.88  E-value=5.4e-22  Score=156.73  Aligned_cols=208  Identities=14%  Similarity=0.155  Sum_probs=160.0

Q ss_pred             ecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeC--CC--CeEEeeccCCCe-eEEEE-------EEEEEeCCCeEEEEEc
Q 046394           42 MLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNR--DG--TELHCSKEHGEV-LKLQF-------LLASINKLGQLRYQNV  109 (378)
Q Consensus        42 ~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~--~~--~~~~~~~~~~~~-~~l~~-------~l~s~~~d~~i~iwd~  109 (378)
                      ..|...|..+...--|..|||+++|++|+|+..  ++  ..+..|.+|.++ ..++|       +||+|+.||.|.||.-
T Consensus         8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke   87 (299)
T KOG1332|consen    8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKE   87 (299)
T ss_pred             hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence            457777777666666999999999999999993  33  467889999998 89998       9999999999999998


Q ss_pred             CCCcE--EEEEecCCCCeeEEEEcCCC--CEEEEEcCCCe-----------------eeecCCCEEEEEEecC---C---
Q 046394          110 TMGEI--VGNFWTGLGRTDVIRVNPFN--GVVSLGHSGGT-----------------MLCHQGPVSALAFHPN---G---  162 (378)
Q Consensus       110 ~~~~~--~~~~~~~~~~v~~~~~s~~~--~~l~~~~~d~~-----------------~~~h~~~v~~~~~sp~---g---  162 (378)
                      .+|+-  ...+..|...|++++|.|.+  -.|++++.||.                 ...|.-.|++++|.|-   |   
T Consensus        88 ~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~  167 (299)
T KOG1332|consen   88 ENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLV  167 (299)
T ss_pred             CCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcccc
Confidence            88753  44566789999999999975  58899999998                 6678999999999995   5   


Q ss_pred             --------CEEEEEECCCeEEEEEcCCcee--eeee--c-CCceEEEEecC--------------CCccccCCCCC-ce-
Q 046394          163 --------HLMATSGKDCKIKIWDLRKYEV--LQTL--P-GHAKTLDFSRK--------------DSGDFSGSHNY-NR-  213 (378)
Q Consensus       163 --------~~l~t~~~d~~i~iwd~~~~~~--~~~~--~-~~i~~~~~sp~--------------g~~~~~~~~~~-~~-  213 (378)
                              +.|++|+.|+.|+||+..++.-  -+++  | ..+..++|.|.              |...+|..... .+ 
T Consensus       168 ~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~w  247 (299)
T KOG1332|consen  168 DQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPW  247 (299)
T ss_pred             ccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcc
Confidence                    5699999999999999987532  2334  3 56777777774              44455543211 10 


Q ss_pred             -EEEeeccCCcceeeeEEcCCCCeEEEecCCCeEEEEE
Q 046394          214 -YMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILI  250 (378)
Q Consensus       214 -~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~  250 (378)
                       ...+.. ....+..++||+.|.+|++++.|..+.+|.
T Consensus       248 k~tll~~-f~~~~w~vSWS~sGn~LaVs~GdNkvtlwk  284 (299)
T KOG1332|consen  248 KKTLLEE-FPDVVWRVSWSLSGNILAVSGGDNKVTLWK  284 (299)
T ss_pred             ccccccc-CCcceEEEEEeccccEEEEecCCcEEEEEE
Confidence             011111 345799999999998888888777666665

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.88  E-value=1.8e-21  Score=162.69  Aligned_cols=209  Identities=16%  Similarity=0.292  Sum_probs=153.2

Q ss_pred             EEEeccceeeeeecccc----------------eeeEEeecCCCCceEEEEcCCCC-EEEEEeCCCcEEEEeCCCCeE--
Q 046394           19 WRIKQEAIAREVDILSS----------------RNQYDIMLPELGPYTLDFTSSGR-YMAAAGCKGYPYFYNRDGTEL--   79 (378)
Q Consensus        19 ~~~~~~~~i~~~d~~~~----------------~~~~~l~~~~~~v~~~~~sp~g~-~l~~~~~dg~i~iwd~~~~~~--   79 (378)
                      ..++..+.|+|||+...                +.++++.+|...-++++|||-.. .|++|..-+.|++|......-  
T Consensus       169 aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~v  248 (440)
T KOG0302|consen  169 ASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKV  248 (440)
T ss_pred             eeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCccccceEeeeeccCceee
Confidence            34455789999998432                46788999999999999999432 488888888999999432221  


Q ss_pred             --EeeccCCCe-eEEEE------EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCeeeecC
Q 046394           80 --HCSKEHGEV-LKLQF------LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGTMLCHQ  150 (378)
Q Consensus        80 --~~~~~~~~~-~~l~~------~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~~~~h~  150 (378)
                        ..+.+|... -.++|      .|++||.||+|+|||++.+.....+.                          ...|.
T Consensus       249 d~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~--------------------------~kAh~  302 (440)
T KOG0302|consen  249 DQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVS--------------------------TKAHN  302 (440)
T ss_pred             cCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeE--------------------------eeccC
Confidence              235668765 88899      99999999999999999874322221                          13788


Q ss_pred             CCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeeecCCceEEEEecCCCccccCCCCCceEEEeeccCCcceeeeEE
Q 046394          151 GPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHAKTLDFSRKDSGDFSGSHNYNRYMGYSMVKGYQIGKVSF  230 (378)
Q Consensus       151 ~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~~~~i~~~~~sp~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  230 (378)
                      +.|+.|.|+..-.+||+|+.||+++|||+|+.+                          ...++..+.. |..+|+++.|
T Consensus       303 sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~--------------------------~~~pVA~fk~-Hk~pItsieW  355 (440)
T KOG0302|consen  303 SDVNVISWNRREPLLASGGDDGTLSIWDLRQFK--------------------------SGQPVATFKY-HKAPITSIEW  355 (440)
T ss_pred             CceeeEEccCCcceeeecCCCceEEEEEhhhcc--------------------------CCCcceeEEe-ccCCeeEEEe
Confidence            899999999987799999999999999999854                          4477777877 9999999999


Q ss_pred             cCCCCeEEEecCCCeEEEEEcCCCCcccccccCCCccchhhhhhHhhhhhhcCCCCCceecC
Q 046394          231 RPYEDVLGIGHSMGVSGILIPGSGEPNFDSWVANPFETSKQRREKEVHSLLDKLPPETIMLN  292 (378)
Q Consensus       231 sp~g~~l~~~~~~g~~~~~~~~s~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (378)
                      +|...           .++..++.|..+.+|++..-....+...... ..|.++||.++.++
T Consensus       356 ~p~e~-----------s~iaasg~D~QitiWDlsvE~D~ee~~~~a~-~~L~dlPpQLLFVH  405 (440)
T KOG0302|consen  356 HPHED-----------SVIAASGEDNQITIWDLSVEADEEEIDQEAA-EGLQDLPPQLLFVH  405 (440)
T ss_pred             ccccC-----------ceEEeccCCCcEEEEEeeccCChhhhccccc-cchhcCCceeEEEe
Confidence            99864           4555666777788888643222111111111 12557777776665

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.88  E-value=9.4e-22  Score=166.09  Aligned_cols=191  Identities=12%  Similarity=0.100  Sum_probs=157.8

Q ss_pred             eEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeC-CCCeEEeeccCCCeeEEEE---
Q 046394           18 TWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNR-DGTELHCSKEHGEVLKLQF---   93 (378)
Q Consensus        18 ~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~~~l~~---   93 (378)
                      .+.-++|..+++|++...+...+|.+|++.|+++.|.-....+++|+.|.+|++||+ ...+..++-....+.++..   
T Consensus       234 ~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~~~  313 (459)
T KOG0288|consen  234 VIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCSIS  313 (459)
T ss_pred             EEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccccccccceEecce
Confidence            455567888999999999999999999999999999987777999999999999995 4555555444444444444   


Q ss_pred             EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCeeee------------------cCCCEEE
Q 046394           94 LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGTMLC------------------HQGPVSA  155 (378)
Q Consensus        94 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~~~~------------------h~~~v~~  155 (378)
                      .+++|-.|+.|++||++++.++...+.+ +.|+++..++++..+.+++.|..+.-                  -...++.
T Consensus       314 ~~~SgH~DkkvRfwD~Rs~~~~~sv~~g-g~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtr  392 (459)
T KOG0288|consen  314 DVISGHFDKKVRFWDIRSADKTRSVPLG-GRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTR  392 (459)
T ss_pred             eeeecccccceEEEeccCCceeeEeecC-cceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccce
Confidence            7888999999999999999999998766 59999999999998888888777100                  1123778


Q ss_pred             EEEecCCCEEEEEECCCeEEEEEcCCceeeeee---c--CCceEEEEecCCCccccCCC
Q 046394          156 LAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL---P--GHAKTLDFSRKDSGDFSGSH  209 (378)
Q Consensus       156 ~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~---~--~~i~~~~~sp~g~~~~~~~~  209 (378)
                      +.|||++.|+++||.||.|+||++.++++...+   +  ..|++++|+|.|...+....
T Consensus       393 vvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk  451 (459)
T KOG0288|consen  393 VVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADK  451 (459)
T ss_pred             eEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccC
Confidence            999999999999999999999999999998877   3  35999999999987665543

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.87  E-value=1.5e-21  Score=173.51  Aligned_cols=197  Identities=16%  Similarity=0.181  Sum_probs=162.7

Q ss_pred             eEEEeccceeeeeecccce------eeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeC-CC--CeEEeeccCCCe
Q 046394           18 TWRIKQEAIAREVDILSSR------NQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNR-DG--TELHCSKEHGEV   88 (378)
Q Consensus        18 ~~~~~~~~~i~~~d~~~~~------~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~-~~--~~~~~~~~~~~~   88 (378)
                      .|...-|++|++|++..-.      .+..+..|...|..+....+|+.|+++|.|-+|++|+. .+  .++.+++.|.+.
T Consensus        40 LfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DY  119 (735)
T KOG0308|consen   40 LFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDY  119 (735)
T ss_pred             EEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccch
Confidence            5666667888888775432      36678899999999999999999999999999999993 23  577889999986


Q ss_pred             -eEEEE------EEEEEeCCCeEEEEEcCCC--cEEE--------EEe-cCCCCeeEEEEcCCCCEEEEEcCCCe-----
Q 046394           89 -LKLQF------LLASINKLGQLRYQNVTMG--EIVG--------NFW-TGLGRTDVIRVNPFNGVVSLGHSGGT-----  145 (378)
Q Consensus        89 -~~l~~------~l~s~~~d~~i~iwd~~~~--~~~~--------~~~-~~~~~v~~~~~s~~~~~l~~~~~d~~-----  145 (378)
                       .|+++      ++|+||-|+.|++||+.++  +.+.        .+. ++..++++++-++.|..|++|+..+.     
T Consensus       120 Vkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wD  199 (735)
T KOG0308|consen  120 VKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWD  199 (735)
T ss_pred             heeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEec
Confidence             88888      9999999999999999977  2222        223 56678999999999999999988776     


Q ss_pred             ---------eeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee--c-CCceEEEEecCCCccccCCCCCce
Q 046394          146 ---------MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL--P-GHAKTLDFSRKDSGDFSGSHNYNR  213 (378)
Q Consensus       146 ---------~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~--~-~~i~~~~~sp~g~~~~~~~~~~~~  213 (378)
                               +.+|...|.++..++||+.++++|.||+|++||+...+|+.++  | ..++++..+|+=.+...+.+++..
T Consensus       200 prt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i  279 (735)
T KOG0308|consen  200 PRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNI  279 (735)
T ss_pred             cccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCcE
Confidence                     7899999999999999999999999999999999999999999  4 668888888765554444444444


Q ss_pred             E
Q 046394          214 Y  214 (378)
Q Consensus       214 ~  214 (378)
                      +
T Consensus       280 ~  280 (735)
T KOG0308|consen  280 Y  280 (735)
T ss_pred             E
Confidence            3

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.87  E-value=5.6e-20  Score=146.73  Aligned_cols=192  Identities=17%  Similarity=0.148  Sum_probs=164.0

Q ss_pred             ceeeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeeccCCCeeEEEE
Q 046394           15 VEKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKEHGEVLKLQF   93 (378)
Q Consensus        15 ~~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~~~l~~   93 (378)
                      -+.++..+.+..+++||+..+++...+... ++-.-++|+|+|.++++++.|..|...| .+.+.+........++-+.|
T Consensus        77 ~d~~atas~dk~ir~wd~r~~k~~~~i~~~-~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w  155 (313)
T KOG1407|consen   77 PDLFATASGDKTIRIWDIRSGKCTARIETK-GENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISW  155 (313)
T ss_pred             CcceEEecCCceEEEEEeccCcEEEEeecc-CcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeee
Confidence            456677788889999999999999888876 4445688999999999999999999999 45555555555555566777


Q ss_pred             -----EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe--------------eeecCCCEE
Q 046394           94 -----LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT--------------MLCHQGPVS  154 (378)
Q Consensus        94 -----~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~--------------~~~h~~~v~  154 (378)
                           +|+.....|.|.|.....-+++.++..|+..+.||.|+|+|++||+|+.|..              +..+.-+|.
T Consensus       156 ~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVR  235 (313)
T KOG1407|consen  156 NNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVR  235 (313)
T ss_pred             cCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceE
Confidence                 4444455699999999999999999999999999999999999999999987              677889999


Q ss_pred             EEEEecCCCEEEEEECCCeEEEEEcCCceeeeee--cCCceEEEEecCCCccccC
Q 046394          155 ALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL--PGHAKTLDFSRKDSGDFSG  207 (378)
Q Consensus       155 ~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~--~~~i~~~~~sp~g~~~~~~  207 (378)
                      .+.||-+|++||++|.|..|-|=++.+|..+..+  .++...++|+|......+.
T Consensus       236 TlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~~~t~tVAWHPk~~LLAyA  290 (313)
T KOG1407|consen  236 TLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPCEGPTFTVAWHPKRPLLAYA  290 (313)
T ss_pred             EEEeccCcceeeccCccceEEeEecccCCeEEEeeccCCceeEEecCCCceeeEE
Confidence            9999999999999999999999999999999999  5889999999987765443

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.86  E-value=1.2e-20  Score=161.30  Aligned_cols=179  Identities=16%  Similarity=0.209  Sum_probs=141.6

Q ss_pred             ecCCCCceEEEEcCCC-CEEEEEeCCCcEEEEeCCC---C--------eEEeeccCCCe-eEEEE------EEEEEeCCC
Q 046394           42 MLPELGPYTLDFTSSG-RYMAAAGCKGYPYFYNRDG---T--------ELHCSKEHGEV-LKLQF------LLASINKLG  102 (378)
Q Consensus        42 ~~~~~~v~~~~~sp~g-~~l~~~~~dg~i~iwd~~~---~--------~~~~~~~~~~~-~~l~~------~l~s~~~d~  102 (378)
                      -.|.+.|+.+.+-|.. ..+|+++..+.|+|||.+.   .        +-..+.+|... .+++|      .+++++.|+
T Consensus       121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~  200 (422)
T KOG0264|consen  121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDH  200 (422)
T ss_pred             ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCC
Confidence            4588899999998865 5677888899999999421   1        12368889884 88999      999999999


Q ss_pred             eEEEEEcCCCc-------EEEEEecCCCCeeEEEEcCCC-CEEEEEcCCCe----------------eeecCCCEEEEEE
Q 046394          103 QLRYQNVTMGE-------IVGNFWTGLGRTDVIRVNPFN-GVVSLGHSGGT----------------MLCHQGPVSALAF  158 (378)
Q Consensus       103 ~i~iwd~~~~~-------~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~d~~----------------~~~h~~~v~~~~~  158 (378)
                      +|++||+....       +...+.+|...|..++|+|-. .+|+++++|+.                ..+|.+.|.|++|
T Consensus       201 ~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~f  280 (422)
T KOG0264|consen  201 TICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAF  280 (422)
T ss_pred             cEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEe
Confidence            99999997532       356678899999999999966 57777777777                5678999999999


Q ss_pred             ec-CCCEEEEEECCCeEEEEEcCCceeeeeecCCceEEEEecCCCccccCCCCCceEEEeeccCCcceeeeEEcCCCC-e
Q 046394          159 HP-NGHLMATSGKDCKIKIWDLRKYEVLQTLPGHAKTLDFSRKDSGDFSGSHNYNRYMGYSMVKGYQIGKVSFRPYED-V  236 (378)
Q Consensus       159 sp-~g~~l~t~~~d~~i~iwd~~~~~~~~~~~~~i~~~~~sp~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~-~  236 (378)
                      +| ++..|||||.|++|.+||+|+.                            ..++..+.+ |...|.+|.|||+.. +
T Consensus       281 np~~~~ilAT~S~D~tV~LwDlRnL----------------------------~~~lh~~e~-H~dev~~V~WSPh~etv  331 (422)
T KOG0264|consen  281 NPFNEFILATGSADKTVALWDLRNL----------------------------NKPLHTFEG-HEDEVFQVEWSPHNETV  331 (422)
T ss_pred             CCCCCceEEeccCCCcEEEeechhc----------------------------ccCceeccC-CCcceEEEEeCCCCCce
Confidence            99 6677899999999999999973                            346677777 899999999999874 4


Q ss_pred             EEEecCCCeEEEE
Q 046394          237 LGIGHSMGVSGIL  249 (378)
Q Consensus       237 l~~~~~~g~~~~~  249 (378)
                      ||+++.|+.+.+|
T Consensus       332 LASSg~D~rl~vW  344 (422)
T KOG0264|consen  332 LASSGTDRRLNVW  344 (422)
T ss_pred             eEecccCCcEEEE
Confidence            5555555544444

>PTZ00420 coronin; Provisional

Probab=99.86  E-value=3.8e-19  Score=164.94  Aligned_cols=190  Identities=11%  Similarity=0.082  Sum_probs=141.6

Q ss_pred             eeeEEEeccceeeeeecccce--------eeEEeecCCCCceEEEEcCCCCE-EEEEeCCCcEEEEeC-CCCeEEeeccC
Q 046394           16 EKTWRIKQEAIAREVDILSSR--------NQYDIMLPELGPYTLDFTSSGRY-MAAAGCKGYPYFYNR-DGTELHCSKEH   85 (378)
Q Consensus        16 ~~~~~~~~~~~i~~~d~~~~~--------~~~~l~~~~~~v~~~~~sp~g~~-l~~~~~dg~i~iwd~-~~~~~~~~~~~   85 (378)
                      ...+..+.|+.|++||+.++.        .+..+.+|...|.+++|+|++.. |++|+.|+.|+|||+ .+..+..+..+
T Consensus        88 ~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~  167 (568)
T PTZ00420         88 EILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMP  167 (568)
T ss_pred             CEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecC
Confidence            455667788999999987642        34467889999999999999875 578999999999995 45556666544


Q ss_pred             CCeeEEEE-----EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeE-----EEEcCCCCEEEEEcCCC----e------
Q 046394           86 GEVLKLQF-----LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDV-----IRVNPFNGVVSLGHSGG----T------  145 (378)
Q Consensus        86 ~~~~~l~~-----~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~-----~~~s~~~~~l~~~~~d~----~------  145 (378)
                      ..+.+++|     +|++++.|+.|+|||+++++.+..+.+|.+.+.+     ..|++++.+|++++.++    .      
T Consensus       168 ~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDl  247 (568)
T PTZ00420        168 KKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDL  247 (568)
T ss_pred             CcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEEC
Confidence            44589999     8888999999999999999999999988876433     34568999888877664    2      


Q ss_pred             -----------eeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCcee--eeee--cCCceEEEEecCCCccc
Q 046394          146 -----------MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEV--LQTL--PGHAKTLDFSRKDSGDF  205 (378)
Q Consensus       146 -----------~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~--~~~~--~~~i~~~~~sp~g~~~~  205 (378)
                                 +..+.+.+......++|.++++|+.|++|++|++..+.+  +..+  ..+..+++|.|....++
T Consensus       248 r~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~~~~s~~p~~g~~f~Pkr~~dv  322 (568)
T PTZ00420        248 KNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKVNEYKSCSPFRSFGFLPKQICDV  322 (568)
T ss_pred             CCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcEEeecccccCCCccceEEccccccCc
Confidence                       111222222333344688999999999999999987643  2222  36778899999876533

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=3.8e-20  Score=158.84  Aligned_cols=228  Identities=13%  Similarity=0.073  Sum_probs=171.4

Q ss_pred             ceeeeeecccceeeEEeecCCC-CceEEEEcCCCCEEEEEeC-CCcEEEEeCCCCe-EEeeccCCCe-eEEEE-----EE
Q 046394           25 AIAREVDILSSRNQYDIMLPEL-GPYTLDFTSSGRYMAAAGC-KGYPYFYNRDGTE-LHCSKEHGEV-LKLQF-----LL   95 (378)
Q Consensus        25 ~~i~~~d~~~~~~~~~l~~~~~-~v~~~~~sp~g~~l~~~~~-dg~i~iwd~~~~~-~~~~~~~~~~-~~l~~-----~l   95 (378)
                      ..+.+||+.||....++++... ...++..- ++.|++++.. -..|.+|...... .....--.++ .+++-     ++
T Consensus        18 ~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l   96 (476)
T KOG0646|consen   18 INCIVWDLRTGTSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFL   96 (476)
T ss_pred             cceeEEecCCCceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhhhhcccccceeeeecCCCceEE
Confidence            3478899999999999887522 22222221 2356666644 4578999853322 2212222333 66655     55


Q ss_pred             EEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe-----------------------eeecCCC
Q 046394           96 ASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT-----------------------MLCHQGP  152 (378)
Q Consensus        96 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~-----------------------~~~h~~~  152 (378)
                      +.|+..+.|++|.+.+|..+..+..|...|+|+.|+.||.+|++|+.||.                       +..|.-+
T Consensus        97 ~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~Htls  176 (476)
T KOG0646|consen   97 LAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLS  176 (476)
T ss_pred             EeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcce
Confidence            55558999999999999999999999999999999999999999999998                       6789999


Q ss_pred             EEEEEEecC--CCEEEEEECCCeEEEEEcCCceeeeee--cCCceEEEEecCCCc-------------cccCC-------
Q 046394          153 VSALAFHPN--GHLMATSGKDCKIKIWDLRKYEVLQTL--PGHAKTLDFSRKDSG-------------DFSGS-------  208 (378)
Q Consensus       153 v~~~~~sp~--g~~l~t~~~d~~i~iwd~~~~~~~~~~--~~~i~~~~~sp~g~~-------------~~~~~-------  208 (378)
                      |+++...+.  ..+++|+|.|.++++||+..+.++.++  +..+.+++.+|.+..             .++..       
T Consensus       177 ITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v  256 (476)
T KOG0646|consen  177 ITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGV  256 (476)
T ss_pred             eEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccc
Confidence            999988774  357999999999999999999999888  789999999996653             11111       


Q ss_pred             ------CCCceEEEeeccCCc--ceeeeEEcCCCCeEEEecCCCeEEEEEcCCC
Q 046394          209 ------HNYNRYMGYSMVKGY--QIGKVSFRPYEDVLGIGHSMGVSGILIPGSG  254 (378)
Q Consensus       209 ------~~~~~~~~~~~~~~~--~v~~~~~sp~g~~l~~~~~~g~~~~~~~~s~  254 (378)
                            ..+..+..+.+ |..  +|+|++.+-||..|++|+.||.+++|...|.
T Consensus       257 ~~k~~~~~~t~~~~~~G-h~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~  309 (476)
T KOG0646|consen  257 NQKGRHEENTQINVLVG-HENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSK  309 (476)
T ss_pred             cccccccccceeeeecc-ccCCcceeEEEEecCccEEEeeCCCCCEEEEecchH
Confidence                  11223445555 555  9999999999999999999998888876653

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.86  E-value=3.8e-20  Score=150.17  Aligned_cols=203  Identities=14%  Similarity=0.182  Sum_probs=153.5

Q ss_pred             EeecCCCCceEEEEcC-CCCEEEEEeCCCcEEEEeCCCCe-----------EEe-----eccCCC-eeEEEE------EE
Q 046394           40 DIMLPELGPYTLDFTS-SGRYMAAAGCKGYPYFYNRDGTE-----------LHC-----SKEHGE-VLKLQF------LL   95 (378)
Q Consensus        40 ~l~~~~~~v~~~~~sp-~g~~l~~~~~dg~i~iwd~~~~~-----------~~~-----~~~~~~-~~~l~~------~l   95 (378)
                      ....|.++|+++...+ .|+|+++|+.||.|.|||+....           +..     -.+|.- +.++.|      .|
T Consensus        38 ~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmF  117 (397)
T KOG4283|consen   38 FVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMF  117 (397)
T ss_pred             eeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCcee
Confidence            3456889999999988 67999999999999999953210           111     123333 366666      89


Q ss_pred             EEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCC---EEEEEcCCCe--------------eeecCCCEEEEEE
Q 046394           96 ASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNG---VVSLGHSGGT--------------MLCHQGPVSALAF  158 (378)
Q Consensus        96 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~---~l~~~~~d~~--------------~~~h~~~v~~~~~  158 (378)
                      .+++.|.++++||..+.+....|. -++.|..-++||-..   ++|+|..+-.              +.+|.+.|.++.|
T Consensus       118 tssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~W  196 (397)
T KOG4283|consen  118 TSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEW  196 (397)
T ss_pred             ecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEe
Confidence            999999999999999998888775 457888889998553   5666655544              8899999999999


Q ss_pred             ecCCCE-EEEEECCCeEEEEEcCCc-eeeeee--cCCceEEEEecCCCccccCCCCCceEEEeeccCCcceeeeEEcCCC
Q 046394          159 HPNGHL-MATSGKDCKIKIWDLRKY-EVLQTL--PGHAKTLDFSRKDSGDFSGSHNYNRYMGYSMVKGYQIGKVSFRPYE  234 (378)
Q Consensus       159 sp~g~~-l~t~~~d~~i~iwd~~~~-~~~~~~--~~~i~~~~~sp~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g  234 (378)
                      +|...+ |+||+.||.|++||++.. -++..+  +..                 .....+..-.. |.+.|+.++|+.+|
T Consensus       197 sp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~-----------------k~~p~~~~n~a-h~gkvngla~tSd~  258 (397)
T KOG4283|consen  197 SPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNT-----------------KRPPILKTNTA-HYGKVNGLAWTSDA  258 (397)
T ss_pred             ccCceeEEEecCCCceEEEEEeecccceeEEeecccC-----------------ccCcccccccc-ccceeeeeeecccc
Confidence            997766 789999999999999874 444444  110                 11111222233 77889999999999


Q ss_pred             CeEEEecCCCeEEEEEcCCCCcccccc
Q 046394          235 DVLGIGHSMGVSGILIPGSGEPNFDSW  261 (378)
Q Consensus       235 ~~l~~~~~~g~~~~~~~~s~d~~i~~w  261 (378)
                      .+|++++.|..+++|-+.++.++++-+
T Consensus       259 ~~l~~~gtd~r~r~wn~~~G~ntl~~~  285 (397)
T KOG4283|consen  259 RYLASCGTDDRIRVWNMESGRNTLREF  285 (397)
T ss_pred             hhhhhccCccceEEeecccCccccccc
Confidence            999999999988999888888877655

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.86  E-value=2.2e-20  Score=167.95  Aligned_cols=201  Identities=15%  Similarity=0.108  Sum_probs=164.1

Q ss_pred             CCceEEEEcCCCCEEEEEeCCCcEEEEeCC-CCeEEeeccCCCe-eEEEE--------EEEEEeCCCeEEEEEcCC-CcE
Q 046394           46 LGPYTLDFTSSGRYMAAAGCKGYPYFYNRD-GTELHCSKEHGEV-LKLQF--------LLASINKLGQLRYQNVTM-GEI  114 (378)
Q Consensus        46 ~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~-~~l~~--------~l~s~~~d~~i~iwd~~~-~~~  114 (378)
                      .++.+++.||+|++||+|..-|+++||++. -.....+.+|... .|+.|        +||+++.|..|+|||+.. ..+
T Consensus       460 ~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l  539 (1080)
T KOG1408|consen  460 FGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDL  539 (1080)
T ss_pred             cceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccch
Confidence            578999999999999999999999999954 4455667788765 99988        999999999999999864 457


Q ss_pred             EEEEecCCCCeeEEEEcCCC--CEEEEEcCCCe--------------eeec-----CCCEEEEEEecCCCEEEEEECCCe
Q 046394          115 VGNFWTGLGRTDVIRVNPFN--GVVSLGHSGGT--------------MLCH-----QGPVSALAFHPNGHLMATSGKDCK  173 (378)
Q Consensus       115 ~~~~~~~~~~v~~~~~s~~~--~~l~~~~~d~~--------------~~~h-----~~~v~~~~~sp~g~~l~t~~~d~~  173 (378)
                      ++++.+|...|+++.|.-.|  ..+++++.|..              +..|     ...+..|+..|...++++++.|..
T Consensus       540 ~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrn  619 (1080)
T KOG1408|consen  540 VQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRN  619 (1080)
T ss_pred             hhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccc
Confidence            88899999999999999887  57777777766              2222     356889999999999999999999


Q ss_pred             EEEEEcCCceeeeee-----c-CCceEEEEecCCCc----------cccCCCCCceEEEeeccCCcceeeeEEcCCCCeE
Q 046394          174 IKIWDLRKYEVLQTL-----P-GHAKTLDFSRKDSG----------DFSGSHNYNRYMGYSMVKGYQIGKVSFRPYEDVL  237 (378)
Q Consensus       174 i~iwd~~~~~~~~~~-----~-~~i~~~~~sp~g~~----------~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l  237 (378)
                      |+|||+.+|+..+.|     + +..-.+...|.|.|          .+++...++++....+ |+..|+.+.|.+|-+.|
T Consensus       620 irif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~G-HsE~VTG~kF~nDCkHl  698 (1080)
T KOG1408|consen  620 IRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTG-HSEAVTGVKFLNDCKHL  698 (1080)
T ss_pred             eEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcC-cchheeeeeecccchhh
Confidence            999999999999999     2 55677888888876          3445556667777777 99999999999999666


Q ss_pred             EEecCCCeEE
Q 046394          238 GIGHSMGVSG  247 (378)
Q Consensus       238 ~~~~~~g~~~  247 (378)
                      ++.+.||.+.
T Consensus       699 ISvsgDgCIF  708 (1080)
T KOG1408|consen  699 ISVSGDGCIF  708 (1080)
T ss_pred             eeecCCceEE
Confidence            6555555433

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=5e-20  Score=157.84  Aligned_cols=240  Identities=18%  Similarity=0.254  Sum_probs=174.9

Q ss_pred             CCCCCCCeeecCCceeeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCC-EEEEEeCCCcEEEEeCCCCeE-
Q 046394            2 LMPSEGGYLEAEGVEKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGR-YMAAAGCKGYPYFYNRDGTEL-   79 (378)
Q Consensus         2 ~~~~~~~~l~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~-~l~~~~~dg~i~iwd~~~~~~-   79 (378)
                      |+|..+- +.+.|+++++++-+      .|-.+...+.++.....+|.+.+|.|+|. .+++++....++.||+....+ 
T Consensus       221 FHp~~pl-llvaG~d~~lrifq------vDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~  293 (514)
T KOG2055|consen  221 FHPTAPL-LLVAGLDGTLRIFQ------VDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVT  293 (514)
T ss_pred             ecCCCce-EEEecCCCcEEEEE------ecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccc
Confidence            4555333 34456666666655      44456667888888889999999999998 899999999999999654433 


Q ss_pred             --EeeccCCCe--eEEEE-----EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe-----
Q 046394           80 --HCSKEHGEV--LKLQF-----LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT-----  145 (378)
Q Consensus        80 --~~~~~~~~~--~~l~~-----~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~-----  145 (378)
                        ..+.++...  .....     +|+..|..|.|.+....+++.+.++. -.+.|..++|+.++..|++++.+|.     
T Consensus       294 k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v~n  372 (514)
T KOG2055|consen  294 KLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSKELLASGGTGEVYVWN  372 (514)
T ss_pred             cccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCCcEEEEEcCCceEEEEe
Confidence              334444422  22222     89999999999999999999998886 4588999999999998888888877     


Q ss_pred             --------eeecCCCE--EEEEEecCCCEEEEEECCCeEEEEEcCC------ceeeeee---cCCceEEEEecCCCcccc
Q 046394          146 --------MLCHQGPV--SALAFHPNGHLMATSGKDCKIKIWDLRK------YEVLQTL---PGHAKTLDFSRKDSGDFS  206 (378)
Q Consensus       146 --------~~~h~~~v--~~~~~sp~g~~l~t~~~d~~i~iwd~~~------~~~~~~~---~~~i~~~~~sp~g~~~~~  206 (378)
                              .....+.|  ++++.+++|.|||+||..|.|.|||..+      .+++.++   ...|+++.|+||+.+...
T Consensus       373 l~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAi  452 (514)
T KOG2055|consen  373 LRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAI  452 (514)
T ss_pred             cCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhh
Confidence                    11112333  5677889999999999999999999754      4556666   578999999999986322


Q ss_pred             C------------CCCCceEEEeec--cCCcceeeeEEcCCCCeEEEecCCCeEEEE
Q 046394          207 G------------SHNYNRYMGYSM--VKGYQIGKVSFRPYEDVLGIGHSMGVSGIL  249 (378)
Q Consensus       207 ~------------~~~~~~~~~~~~--~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~  249 (378)
                      .            ......+..|..  ..-..|+||+|||.|.+||+|...|.+.+|
T Consensus       453 aS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~  509 (514)
T KOG2055|consen  453 ASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLF  509 (514)
T ss_pred             hhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeE
Confidence            1            112222222221  023468999999999999999999976665

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.85  E-value=2.4e-20  Score=161.83  Aligned_cols=207  Identities=16%  Similarity=0.135  Sum_probs=152.3

Q ss_pred             eeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCCCeE-----Eeec-cCCC-eeEEEE-----EEEEEeCCCe
Q 046394           36 RNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTEL-----HCSK-EHGE-VLKLQF-----LLASINKLGQ  103 (378)
Q Consensus        36 ~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~-----~~~~-~~~~-~~~l~~-----~l~s~~~d~~  103 (378)
                      ..-..+.+|+..|.++++.|.|..|++||.|..|++||+.|...     +.+. .... +.++.|     .|++.+....
T Consensus       158 shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aq  237 (641)
T KOG0772|consen  158 SHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQ  237 (641)
T ss_pred             cceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcc
Confidence            34467888989999999999999999999999999999765321     2222 2222 388888     6666666678


Q ss_pred             EEEEEcCCCcEEEE------------EecCCCCeeEEEEcCCC-CEEEEEcCCCe--------------------eeecC
Q 046394          104 LRYQNVTMGEIVGN------------FWTGLGRTDVIRVNPFN-GVVSLGHSGGT--------------------MLCHQ  150 (378)
Q Consensus       104 i~iwd~~~~~~~~~------------~~~~~~~v~~~~~s~~~-~~l~~~~~d~~--------------------~~~h~  150 (378)
                      .+|+|-.-.+.+..            .++|...++|.+|+|++ ..|++++.||+                    ..+-.
T Consensus       238 akl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~R  317 (641)
T KOG0772|consen  238 AKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKR  317 (641)
T ss_pred             eeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcc
Confidence            99999643332222            24677789999999988 58899999998                    12234


Q ss_pred             CCEEEEEEecCCCEEEEEECCCeEEEEEcCCcee--eeee---c---CCceEEEEecCCCc----------cccCCCC-C
Q 046394          151 GPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEV--LQTL---P---GHAKTLDFSRKDSG----------DFSGSHN-Y  211 (378)
Q Consensus       151 ~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~--~~~~---~---~~i~~~~~sp~g~~----------~~~~~~~-~  211 (378)
                      -++++++|+|+|++||+|+.||+|.+||.++...  ...+   |   ..|+||+||+||.+          .+|+.+. .
T Consensus       318 v~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~k  397 (641)
T KOG0772|consen  318 VPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFK  397 (641)
T ss_pred             cCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccc
Confidence            5689999999999999999999999999866433  2222   3   47999999999986          5666543 3


Q ss_pred             ceEEEeec-cCCcceeeeEEcCCCCeEEEecC
Q 046394          212 NRYMGYSM-VKGYQIGKVSFRPYEDVLGIGHS  242 (378)
Q Consensus       212 ~~~~~~~~-~~~~~v~~~~~sp~g~~l~~~~~  242 (378)
                      +++.++.+ ....+-+.++|||+.+++++|.+
T Consensus       398 kpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS  429 (641)
T KOG0772|consen  398 KPLNVRTGLPTPFPGTDCCFSPDDKLILTGTS  429 (641)
T ss_pred             cchhhhcCCCccCCCCccccCCCceEEEeccc
Confidence            34444433 13456788999999999998864

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.85  E-value=1e-19  Score=149.01  Aligned_cols=216  Identities=11%  Similarity=0.010  Sum_probs=156.8

Q ss_pred             ceeeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCC--EEEEEeCCCcEEEEeC-CCCeEEeeccCCCe-eE
Q 046394           15 VEKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGR--YMAAAGCKGYPYFYNR-DGTELHCSKEHGEV-LK   90 (378)
Q Consensus        15 ~~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~--~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~-~~   90 (378)
                      .--.++.+.|++|++||+......-.+-.|.+.|+++.|.++-.  .|++|+.||.|.+|+. .-..+.++++|.+. +.
T Consensus        53 ~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~  132 (362)
T KOG0294|consen   53 GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTD  132 (362)
T ss_pred             ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccce
Confidence            33455667899999999999999999999999999999999775  8999999999999994 45677899999986 88


Q ss_pred             EEE-----EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe----------eeec--CCCE
Q 046394           91 LQF-----LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT----------MLCH--QGPV  153 (378)
Q Consensus        91 l~~-----~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~----------~~~h--~~~v  153 (378)
                      ++.     +.++.+.|+.+++||+-+|+.-..+... ...+.+.|+|.|.+|+++..++.          +..-  ...+
T Consensus       133 lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~-~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~  211 (362)
T KOG0294|consen  133 LSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLK-NKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRI  211 (362)
T ss_pred             eEecCCCceEEEEcCCceeeeehhhcCccceeeccC-CcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhccccc
Confidence            888     7788999999999999998765544332 33445999999999999888887          1111  1234


Q ss_pred             EEEEEecCCCEEEEEECCCeEEEEEcCCcee--eee-----------e--cCCceEEEEecCCCccccCCCCC-----ce
Q 046394          154 SALAFHPNGHLMATSGKDCKIKIWDLRKYEV--LQT-----------L--PGHAKTLDFSRKDSGDFSGSHNY-----NR  213 (378)
Q Consensus       154 ~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~--~~~-----------~--~~~i~~~~~sp~g~~~~~~~~~~-----~~  213 (378)
                      .++.|. ++.+|++|+.|+.|.+||..+..+  ...           +  +..-.-++.|.||.+.+|+....     .+
T Consensus       212 l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k~~~~~  290 (362)
T KOG0294|consen  212 LCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETKKRPTL  290 (362)
T ss_pred             eeeeec-CCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEccccccCCcce
Confidence            555553 455777777777777777764332  111           1  12223355667777777765443     45


Q ss_pred             EEEeeccCCcceeeeEEcCCC
Q 046394          214 YMGYSMVKGYQIGKVSFRPYE  234 (378)
Q Consensus       214 ~~~~~~~~~~~v~~~~~sp~g  234 (378)
                      +..+..  +.+++|+...-..
T Consensus       291 l~e~n~--~~RltCl~~~~~~  309 (362)
T KOG0294|consen  291 LAELNT--NVRLTCLRVKLEK  309 (362)
T ss_pred             eEEeec--CCccceeeehhhh
Confidence            555543  6778888877653

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.85  E-value=2.8e-21  Score=173.83  Aligned_cols=187  Identities=21%  Similarity=0.286  Sum_probs=167.3

Q ss_pred             EeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeeccCCCe-eEEEE-----
Q 046394           21 IKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKEHGEV-LKLQF-----   93 (378)
Q Consensus        21 ~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~-~~l~~-----   93 (378)
                      ...+..+-+|.+.....+..+.+|..+|-|+.|+++..+|++|+.+|+|++|| ..+..++++.+|... ..+.|     
T Consensus        46 Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~  125 (825)
T KOG0267|consen   46 GGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGE  125 (825)
T ss_pred             CCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceE
Confidence            33456667788877777888999999999999999999999999999999999 567788999999875 88889     


Q ss_pred             EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe--------------eeecCCCEEEEEEe
Q 046394           94 LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT--------------MLCHQGPVSALAFH  159 (378)
Q Consensus        94 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~--------------~~~h~~~v~~~~~s  159 (378)
                      ++++++.|+.+.+||++...|...+.+|...+.++.|+|+|.++++++.|..              +..|.+.+.++.|+
T Consensus       126 ~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~h  205 (825)
T KOG0267|consen  126 FFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFH  205 (825)
T ss_pred             EeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccC
Confidence            8889999999999999988899999999999999999999999999999777              67799999999999


Q ss_pred             cCCCEEEEEECCCeEEEEEcCCceeeeee---cCCceEEEEecCCCccccC
Q 046394          160 PNGHLMATSGKDCKIKIWDLRKYEVLQTL---PGHAKTLDFSRKDSGDFSG  207 (378)
Q Consensus       160 p~g~~l~t~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~~sp~g~~~~~~  207 (378)
                      |..-++++||.|++|++||+++.+.+...   ...|.++.|+|+|.....+
T Consensus       206 p~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G  256 (825)
T KOG0267|consen  206 PLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSG  256 (825)
T ss_pred             chhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecC
Confidence            99989999999999999999998888877   4789999999999864443

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.85  E-value=1.4e-19  Score=167.11  Aligned_cols=201  Identities=18%  Similarity=0.170  Sum_probs=169.2

Q ss_pred             cCCceeeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeC-CCCeEEeeccCCCe-e
Q 046394           12 AEGVEKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNR-DGTELHCSKEHGEV-L   89 (378)
Q Consensus        12 ~~~~~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~-~   89 (378)
                      +.+.+..+..+.|.++++||..++++...+.+|.+.|.++...+  .++++|+.|.+|++|++ ++..++.+.+|.++ .
T Consensus       258 ~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~--~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~  335 (537)
T KOG0274|consen  258 PSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTIDP--FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVN  335 (537)
T ss_pred             ecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEccC--ceEeeccCCceEEEEeccCcceEEEeccccccEE
Confidence            33567778888999999999999999999999999999998764  47888899999999995 58888999989887 8


Q ss_pred             EEEE---EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe---------------eeecCC
Q 046394           90 KLQF---LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT---------------MLCHQG  151 (378)
Q Consensus        90 ~l~~---~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~---------------~~~h~~  151 (378)
                      ++..   ++++|+.|++|.+||+.+++++.++.+|...|.++.+.+. ..+++|+.|+.               +.+|..
T Consensus       336 ~v~~~~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~  414 (537)
T KOG0274|consen  336 CVQLDEPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTS  414 (537)
T ss_pred             EEEecCCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCcc
Confidence            8888   9999999999999999999999999999999999988877 89999999986               566777


Q ss_pred             CEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee-c---CCceEEEEe--------cCCCccccCCCCCceEEEe
Q 046394          152 PVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL-P---GHAKTLDFS--------RKDSGDFSGSHNYNRYMGY  217 (378)
Q Consensus       152 ~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~-~---~~i~~~~~s--------p~g~~~~~~~~~~~~~~~~  217 (378)
                      -|.++.+  .+++|++++.|++|++||..++++++++ .   ..+..+++.        .+|.+.+|+.....++..+
T Consensus       415 ~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~~~~il~s~~~~~~~l~dl~~~~~~~~l  490 (537)
T KOG0274|consen  415 LVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALGKEEILCSSDDGSVKLWDLRSGTLIRTL  490 (537)
T ss_pred             ccccccc--ccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecCcceEEEEecCCeeEEEecccCchhhhh
Confidence            7755554  5779999999999999999999999998 2   455555553        4566677766666555433

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.85  E-value=6.1e-19  Score=152.85  Aligned_cols=223  Identities=16%  Similarity=0.153  Sum_probs=181.3

Q ss_pred             eccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEE----eeccCCC--eeEEEE--
Q 046394           22 KQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTELH----CSKEHGE--VLKLQF--   93 (378)
Q Consensus        22 ~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~----~~~~~~~--~~~l~~--   93 (378)
                      +.+..+.+||...+.+.-..+..+..|....|+|.+..|+.....|.+..|+..+..+.    .+..+..  +.+++|  
T Consensus       177 s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~e  256 (626)
T KOG2106|consen  177 SNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLE  256 (626)
T ss_pred             CCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcC
Confidence            44678889999988888888888889999999997765555556789999996654432    2333433  489999  


Q ss_pred             --EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe--------------------------
Q 046394           94 --LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT--------------------------  145 (378)
Q Consensus        94 --~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~--------------------------  145 (378)
                        -++||..+|.|.||+..+.+.......|++.|.+++.-.+|.++. |+.|+.                          
T Consensus       257 ngdviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv  335 (626)
T KOG2106|consen  257 NGDVITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNYRKLRETELPEQFGPIRTV  335 (626)
T ss_pred             CCCEEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEee-cCccceEEeccccccccccccCchhcCCeeEE
Confidence              899999999999999988887777779999999999999998887 888776                          


Q ss_pred             ----------------------------eeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee--cCCceEE
Q 046394          146 ----------------------------MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL--PGHAKTL  195 (378)
Q Consensus       146 ----------------------------~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~--~~~i~~~  195 (378)
                                                  ..+|......++.+|+.+.++|++.|+.++||+  ..+++.+.  ..++.|+
T Consensus       336 ~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~~~~~  413 (626)
T KOG2106|consen  336 AEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIEDPAECA  413 (626)
T ss_pred             ecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEecCceeEe
Confidence                                        567888999999999999999999999999999  55555544  7899999


Q ss_pred             EEecCCCc---------cccCCCCCceEEEeeccCCcceeeeEEcCCCCeEEEecCCCeEEEE
Q 046394          196 DFSRKDSG---------DFSGSHNYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGIL  249 (378)
Q Consensus       196 ~~sp~g~~---------~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~  249 (378)
                      .|+|.|..         .+.+..+...+..+.  ...+++.++|+|+|.+||+|+.|+.+.++
T Consensus       414 ~fhpsg~va~Gt~~G~w~V~d~e~~~lv~~~~--d~~~ls~v~ysp~G~~lAvgs~d~~iyiy  474 (626)
T KOG2106|consen  414 DFHPSGVVAVGTATGRWFVLDTETQDLVTIHT--DNEQLSVVRYSPDGAFLAVGSHDNHIYIY  474 (626)
T ss_pred             eccCcceEEEeeccceEEEEecccceeEEEEe--cCCceEEEEEcCCCCEEEEecCCCeEEEE
Confidence            99998842         445556655555554  37889999999999999999999977654

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.85  E-value=9.1e-21  Score=150.32  Aligned_cols=187  Identities=13%  Similarity=0.146  Sum_probs=157.4

Q ss_pred             eccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCC--CCeEEeeccCCCe-eEEEE-----
Q 046394           22 KQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRD--GTELHCSKEHGEV-LKLQF-----   93 (378)
Q Consensus        22 ~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~-~~l~~-----   93 (378)
                      ..|-+-++||.-++..++++.. ..-|.+++|+.|.++|++|+.+..++|||++  ..+...+.+|.+. ..+.|     
T Consensus        78 aadftakvw~a~tgdelhsf~h-khivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~  156 (334)
T KOG0278|consen   78 AADFTAKVWDAVTGDELHSFEH-KHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDK  156 (334)
T ss_pred             cccchhhhhhhhhhhhhhhhhh-hheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCc
Confidence            3455678899999999888864 4688999999999999999999999999953  4566788999876 77778     


Q ss_pred             EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe----------ee--ecCCCEEEEEEecC
Q 046394           94 LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT----------ML--CHQGPVSALAFHPN  161 (378)
Q Consensus        94 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~----------~~--~h~~~v~~~~~sp~  161 (378)
                      .|++++.|++|++||.+++..++++. ...+|+++.++++|.+|.++...+.          +.  .-...|.+..++|+
T Consensus       157 ~iLSSadd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~  235 (334)
T KOG0278|consen  157 CILSSADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMPCNVESASLHPK  235 (334)
T ss_pred             eEEeeccCCceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEecCceeEEeccccccceeeccCccccccccccCC
Confidence            78888999999999999999999886 4588999999999999998887776          11  22456888999999


Q ss_pred             CCEEEEEECCCeEEEEEcCCceeeeee----cCCceEEEEecCCCccccCCCC
Q 046394          162 GHLMATSGKDCKIKIWDLRKYEVLQTL----PGHAKTLDFSRKDSGDFSGSHN  210 (378)
Q Consensus       162 g~~l~t~~~d~~i~iwd~~~~~~~~~~----~~~i~~~~~sp~g~~~~~~~~~  210 (378)
                      ...+++|+.|..++.||..++..+..+    +++|.|+.|+|||........+
T Consensus       236 k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSED  288 (334)
T KOG0278|consen  236 KEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSED  288 (334)
T ss_pred             CceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCC
Confidence            999999999999999999999998776    5899999999999654444433

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.85  E-value=9.3e-20  Score=162.00  Aligned_cols=123  Identities=12%  Similarity=0.129  Sum_probs=97.2

Q ss_pred             ccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe--CCCCeEEeeccCCCe--eEEEE-----
Q 046394           23 QEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN--RDGTELHCSKEHGEV--LKLQF-----   93 (378)
Q Consensus        23 ~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd--~~~~~~~~~~~~~~~--~~l~~-----   93 (378)
                      ..+.+++||+.+++..+.+.+|...|.++.|+.||.+|++++.|..|+|||  ..+.++....+|.+.  ..+.|     
T Consensus       148 a~g~v~i~D~stqk~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa~~~piQ~te~H~~~rdsRv~w~Gn~~  227 (1012)
T KOG1445|consen  148 AHGSVYITDISTQKTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRASMEPIQTTEGHGGMRDSRVLWAGNWE  227 (1012)
T ss_pred             cCceEEEEEcccCceeecccCCchhhhccccccCCceEeeecCCcceEEeCCccCCCccccccccccchhheeeeccchh
Confidence            347789999999999999999999999999999999999999999999999  567888888999886  67777     


Q ss_pred             EEEEEeCC----CeEEEEEcCC-CcEEEEEec-CCCCeeEEEEcCCCCEEEEEcCCCe
Q 046394           94 LLASINKL----GQLRYQNVTM-GEIVGNFWT-GLGRTDVIRVNPFNGVVSLGHSGGT  145 (378)
Q Consensus        94 ~l~s~~~d----~~i~iwd~~~-~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~d~~  145 (378)
                      .|++.+.+    ..|++||.+. +.++.++.. ..-.|.---|.||.++++.++....
T Consensus       228 rlisTGF~~~R~reV~~~Dtr~f~~p~~tleld~stGvLiPl~DpDt~llfLaGKG~~  285 (1012)
T KOG1445|consen  228 RLISTGFTTKRIREVRAYDTRKFGAPVHTLELDSSTGVLIPLYDPDTRLLFLAGKGTN  285 (1012)
T ss_pred             hhhhcccchhhheeeeeeeccccCCcceeEEeecccceEeeeecCCCceEEEecCCcc
Confidence            55555543    5689999876 345555443 2244666678999887776665443

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=5.7e-19  Score=158.07  Aligned_cols=206  Identities=17%  Similarity=0.156  Sum_probs=173.8

Q ss_pred             eecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCCC--eEEeeccCCC--eeEEEE----EEEEEeCCCeEEEEEcCCC
Q 046394           41 IMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGT--ELHCSKEHGE--VLKLQF----LLASINKLGQLRYQNVTMG  112 (378)
Q Consensus        41 l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~--~~~l~~----~l~s~~~d~~i~iwd~~~~  112 (378)
                      +.....+|.+||||...+.||.+-.+|.|.||++...  ....+.++..  +-+++|    .|.+.+.+|.|.-||+.++
T Consensus        21 ~d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~l  100 (691)
T KOG2048|consen   21 VDYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTL  100 (691)
T ss_pred             EeeeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEecccC
Confidence            3344578999999999999999999999999995433  3345666654  388999    8999999999999999999


Q ss_pred             cEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe----------------eeecCCCEEEEEEecCCCEEEEEECCCeEEE
Q 046394          113 EIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT----------------MLCHQGPVSALAFHPNGHLMATSGKDCKIKI  176 (378)
Q Consensus       113 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~----------------~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~i  176 (378)
                      ++...+....+.|++++.+|.+..+++|++||.                +....+.|.+++|+|++..+++|+.||.|++
T Consensus       101 k~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iri  180 (691)
T KOG2048|consen  101 KQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRI  180 (691)
T ss_pred             ceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEE
Confidence            999999988999999999999999999999998                3445689999999999999999999999999


Q ss_pred             EEcCCceeeeee-------c----CCceEEEEecCC---------CccccCCCCCceEEEeeccCCcceeeeEEcCCCCe
Q 046394          177 WDLRKYEVLQTL-------P----GHAKTLDFSRKD---------SGDFSGSHNYNRYMGYSMVKGYQIGKVSFRPYEDV  236 (378)
Q Consensus       177 wd~~~~~~~~~~-------~----~~i~~~~~sp~g---------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~  236 (378)
                      ||..++..++..       .    .-++++.|-.++         ...+|+...+.++..+.. |..-|.+++-.+++..
T Consensus       181 wd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gTLiqS~~~-h~adVl~Lav~~~~d~  259 (691)
T KOG2048|consen  181 WDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFGTLIQSHSC-HDADVLALAVADNEDR  259 (691)
T ss_pred             EEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCcchhhhhhh-hhcceeEEEEcCCCCe
Confidence            999998876622       1    234666555544         458999999999999988 8888999999999999


Q ss_pred             EEEecCCCeEE
Q 046394          237 LGIGHSMGVSG  247 (378)
Q Consensus       237 l~~~~~~g~~~  247 (378)
                      +.+++-|+.+.
T Consensus       260 vfsaGvd~~ii  270 (691)
T KOG2048|consen  260 VFSAGVDPKII  270 (691)
T ss_pred             EEEccCCCceE
Confidence            99888888553

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.84  E-value=2.9e-21  Score=173.75  Aligned_cols=215  Identities=18%  Similarity=0.282  Sum_probs=182.2

Q ss_pred             cceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeC-CCCeEEeeccCCCe-eEEEE-----EEE
Q 046394           24 EAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNR-DGTELHCSKEHGEV-LKLQF-----LLA   96 (378)
Q Consensus        24 ~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~-~~l~~-----~l~   96 (378)
                      +-.+++||.      ..+..|...|.++..-..++.+++|+.|..+-+|.. .-..+..|.+|..+ -++.|     +|+
T Consensus        13 ~t~Lr~~~~------~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~Lla   86 (825)
T KOG0267|consen   13 ATKLRVWDT------REFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLA   86 (825)
T ss_pred             eeccccccc------hhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhc
Confidence            334556664      345567778888887667789999999999999994 34556678999987 88988     899


Q ss_pred             EEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe--------------eeecCCCEEEEEEecCC
Q 046394           97 SINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT--------------MLCHQGPVSALAFHPNG  162 (378)
Q Consensus        97 s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~--------------~~~h~~~v~~~~~sp~g  162 (378)
                      +|+.+|+|++||+..++.++++.+|...+..+.|+|-+.+++.|+.|..              +.+|...|.++.|+|+|
T Consensus        87 agsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~G  166 (825)
T KOG0267|consen   87 AGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDG  166 (825)
T ss_pred             ccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCC
Confidence            9999999999999999999999999999999999999999999998877              56788889999999999


Q ss_pred             CEEEEEECCCeEEEEEcCCceeeeee---cCCceEEEEecC----------CCccccCCCCCceEEEeeccCCcceeeeE
Q 046394          163 HLMATSGKDCKIKIWDLRKYEVLQTL---PGHAKTLDFSRK----------DSGDFSGSHNYNRYMGYSMVKGYQIGKVS  229 (378)
Q Consensus       163 ~~l~t~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~~sp~----------g~~~~~~~~~~~~~~~~~~~~~~~v~~~~  229 (378)
                      +++++++.|.+++|||+..|+.+..|   .+.+.++.|+|.          +...+|+.++.+.+..... ....|.++.
T Consensus       167 r~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~-~~~~v~~~~  245 (825)
T KOG0267|consen  167 RWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKP-ETDGVRSLA  245 (825)
T ss_pred             ceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCC-ccCCceeee
Confidence            99999999999999999999999999   378888888884          3458888888777777666 567899999


Q ss_pred             EcCCCCeEEEecCCCe
Q 046394          230 FRPYEDVLGIGHSMGV  245 (378)
Q Consensus       230 ~sp~g~~l~~~~~~g~  245 (378)
                      |+|+|..+++|.....
T Consensus       246 fn~~~~~~~~G~q~sl  261 (825)
T KOG0267|consen  246 FNPDGKIVLSGEQISL  261 (825)
T ss_pred             ecCCceeeecCchhhh
Confidence            9999998888877654

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.84  E-value=7.2e-20  Score=148.56  Aligned_cols=229  Identities=16%  Similarity=0.210  Sum_probs=165.1

Q ss_pred             CCCCCCCCeeecCCceeeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCC---CEEEEEeCCCcEEEEe-CCC
Q 046394            1 WLMPSEGGYLEAEGVEKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSG---RYMAAAGCKGYPYFYN-RDG   76 (378)
Q Consensus         1 ~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g---~~l~~~~~dg~i~iwd-~~~   76 (378)
                      +++|.|+|.+.+++.|.++        ++||..|.+....+... +.|++-++||-.   .+||+|..+-.|++-| .+|
T Consensus       108 ~WyP~DtGmFtssSFDhtl--------KVWDtnTlQ~a~~F~me-~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SG  178 (397)
T KOG4283|consen  108 IWYPIDTGMFTSSSFDHTL--------KVWDTNTLQEAVDFKME-GKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASG  178 (397)
T ss_pred             EEeeecCceeecccccceE--------EEeecccceeeEEeecC-ceeehhhcChhhhcceEEEEecCCCcEEEEeccCC
Confidence            4789999999987776655        56677788777777764 789999999854   3678888899999999 688


Q ss_pred             CeEEeeccCCCe-eEEEE------EEEEEeCCCeEEEEEcCCC-cEEEEEecCCC-CeeEEEEcCCCCEEEEEcCCCeee
Q 046394           77 TELHCSKEHGEV-LKLQF------LLASINKLGQLRYQNVTMG-EIVGNFWTGLG-RTDVIRVNPFNGVVSLGHSGGTML  147 (378)
Q Consensus        77 ~~~~~~~~~~~~-~~l~~------~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~d~~~~  147 (378)
                      ...+++.+|.+. .++.|      .|++|+.||.|++||++.. .+...+..|.. ....+.-               -.
T Consensus       179 s~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~---------------n~  243 (397)
T KOG4283|consen  179 SFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKT---------------NT  243 (397)
T ss_pred             cceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccc---------------cc
Confidence            999999999975 99999      8999999999999999875 56777766653 1111111               13


Q ss_pred             ecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCcee-eeee----cCC-------ce-----EEEEec-CCCccccCCC
Q 046394          148 CHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEV-LQTL----PGH-------AK-----TLDFSR-KDSGDFSGSH  209 (378)
Q Consensus       148 ~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~-~~~~----~~~-------i~-----~~~~sp-~g~~~~~~~~  209 (378)
                      .|.+.|..++|+.+|.++++++.|..+++|+..+|+. +..+    +..       +.     .+.+-| ++...+.+..
T Consensus       244 ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p~~~~lall~~~  323 (397)
T KOG4283|consen  244 AHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQSMDSDVFVLFPNDGSLALLNLL  323 (397)
T ss_pred             cccceeeeeeecccchhhhhccCccceEEeecccCcccccccccccccccccceEEEeecccceEEEEecCCeEEEEEcc
Confidence            7999999999999999999999999999999988764 2322    111       11     112222 2333455555


Q ss_pred             CCceEEEeeccCCcceeeeEEcCCCCeEEEecCCCeEEEEEcCCCCcccccccCCCc
Q 046394          210 NYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILIPGSGEPNFDSWVANPF  266 (378)
Q Consensus       210 ~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~~~s~d~~i~~w~~~~~  266 (378)
                      .+..+..+.. |...|.+..|.|+=+.+            .+|+.|+++..|-..++
T Consensus       324 sgs~ir~l~~-h~k~i~c~~~~~~fq~~------------~tg~~d~ni~~w~p~l~  367 (397)
T KOG4283|consen  324 EGSFVRRLST-HLKRINCAAYRPDFEQC------------FTGDMNGNIYMWSPALK  367 (397)
T ss_pred             CceEEEeeec-ccceeeEEeecCchhhh------------hccccCCcccccccccc
Confidence            6666667777 67778888887776444            45555556666654333

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.84  E-value=1.7e-19  Score=161.80  Aligned_cols=222  Identities=12%  Similarity=0.080  Sum_probs=184.3

Q ss_pred             eeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCCCe---EEeeccCCCe--eEEEE------EEEEEeCCCeE
Q 046394           36 RNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTE---LHCSKEHGEV--LKLQF------LLASINKLGQL  104 (378)
Q Consensus        36 ~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~--~~l~~------~l~s~~~d~~i  104 (378)
                      +....+.+|...|..+++.+. .+++++|.||++++|+..+..   .+.+.+|.+.  ..++|      .+++|+.|++|
T Consensus         5 ~ls~~l~gH~~DVr~v~~~~~-~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i   83 (745)
T KOG0301|consen    5 KLSHELEGHKSDVRAVAVTDG-VCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTI   83 (745)
T ss_pred             eeEEEeccCccchheeEecCC-eEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceE
Confidence            446788999999998887764 489999999999999954433   3557777775  33677      69999999999


Q ss_pred             EEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe------------eeecCCCEEEEEEecCCCEEEEEECCC
Q 046394          105 RYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT------------MLCHQGPVSALAFHPNGHLMATSGKDC  172 (378)
Q Consensus       105 ~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~------------~~~h~~~v~~~~~sp~g~~l~t~~~d~  172 (378)
                      .+|...+..++.++.+|...|.++....++. +++|+-|.+            +.+|+..|.++.+-|++ .++|||.|.
T Consensus        84 ~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDK  161 (745)
T KOG0301|consen   84 IVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGELVYSLQGHTASVWAVASLPEN-TYVTGSADK  161 (745)
T ss_pred             EEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecchhhhcccCCcchheeeeeecCCC-cEEeccCcc
Confidence            9999999999999999999999999988888 999999988            78999999999999987 899999999


Q ss_pred             eEEEEEcCCceeeeee--c-CCceEEEE---------ecCCCccccCCCCCceEEEeeccCCcceeeeEEcCCCCeEEEe
Q 046394          173 KIKIWDLRKYEVLQTL--P-GHAKTLDF---------SRKDSGDFSGSHNYNRYMGYSMVKGYQIGKVSFRPYEDVLGIG  240 (378)
Q Consensus       173 ~i~iwd~~~~~~~~~~--~-~~i~~~~~---------sp~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~  240 (378)
                      +|++|.-  ++++.+|  | ..|..+++         +.||.+..|+. ++..+..+.+ |.+-|++++..+++..++++
T Consensus       162 tIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~-~ge~l~~~~g-htn~vYsis~~~~~~~Ivs~  237 (745)
T KOG0301|consen  162 TIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDL-DGEVLLEMHG-HTNFVYSISMALSDGLIVST  237 (745)
T ss_pred             eeeeccC--CchhhhhccchhheeeeEEecCCCeEeecCCceEEEEec-cCceeeeeec-cceEEEEEEecCCCCeEEEe
Confidence            9999975  6777777  3 44555544         55677789987 6777778888 99999999988888999999


Q ss_pred             cCCCeEEEE---------------------------EcCCCCcccccccCC
Q 046394          241 HSMGVSGIL---------------------------IPGSGEPNFDSWVAN  264 (378)
Q Consensus       241 ~~~g~~~~~---------------------------~~~s~d~~i~~w~~~  264 (378)
                      +.|+.+.+|                           +.|++|+.+++|...
T Consensus       238 gEDrtlriW~~~e~~q~I~lPttsiWsa~~L~NgDIvvg~SDG~VrVfT~~  288 (745)
T KOG0301|consen  238 GEDRTLRIWKKDECVQVITLPTTSIWSAKVLLNGDIVVGGSDGRVRVFTVD  288 (745)
T ss_pred             cCCceEEEeecCceEEEEecCccceEEEEEeeCCCEEEeccCceEEEEEec
Confidence            999977643                           567778888888654

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.84  E-value=2.4e-19  Score=151.72  Aligned_cols=208  Identities=15%  Similarity=0.162  Sum_probs=151.2

Q ss_pred             CCCCCeeecCCceeeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeC-CCCeEEee
Q 046394            4 PSEGGYLEAEGVEKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNR-DGTELHCS   82 (378)
Q Consensus         4 ~~~~~~l~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~-~~~~~~~~   82 (378)
                      .++-.||++.+.|.|.-+|.    -+.|.. -+..+++.+|..+|.-+.||||.++|++|+.+..+.+||. +|...+.+
T Consensus       233 S~nGkyLAsaSkD~Taiiw~----v~~d~~-~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y  307 (519)
T KOG0293|consen  233 SHNGKYLASASKDSTAIIWI----VVYDVH-FKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLY  307 (519)
T ss_pred             cCCCeeEeeccCCceEEEEE----EecCcc-eeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhc
Confidence            34456788777887777775    122322 4567899999999999999999999999999999999995 45555555


Q ss_pred             ccCCC--eeEEEE-----EEEEEeCCCeEEEEEcCCCcEEEEEecC-CCCeeEEEEcCCCCEEEEEcCCCe---------
Q 046394           83 KEHGE--VLKLQF-----LLASINKLGQLRYQNVTMGEIVGNFWTG-LGRTDVIRVNPFNGVVSLGHSGGT---------  145 (378)
Q Consensus        83 ~~~~~--~~~l~~-----~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~d~~---------  145 (378)
                      ....+  +.+++|     .+++|+.|+++..||+. |.......+- ...|.+++.++||.++++.+.|..         
T Consensus       308 ~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~  386 (519)
T KOG0293|consen  308 PSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD-GNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREAR  386 (519)
T ss_pred             ccCcCCCcceeEEccCCceeEecCCCCcEEEecCC-cchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhh
Confidence            43322  388888     99999999999999984 5544444432 245788888888887777666554         


Q ss_pred             ----------------------------------------------eeecCCC--EEEEEEec-CCCEEEEEECCCeEEE
Q 046394          146 ----------------------------------------------MLCHQGP--VSALAFHP-NGHLMATSGKDCKIKI  176 (378)
Q Consensus       146 ----------------------------------------------~~~h~~~--v~~~~~sp-~g~~l~t~~~d~~i~i  176 (378)
                                                                    +.||...  |..-+|-. +..++++||.|+.|+|
T Consensus       387 ~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyI  466 (519)
T KOG0293|consen  387 VDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYI  466 (519)
T ss_pred             hhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEE
Confidence                                                          4455433  33334544 4578999999999999


Q ss_pred             EEcCCceeeeee--c-CCceEEEEecCCCccccCCCCCceEEEe
Q 046394          177 WDLRKYEVLQTL--P-GHAKTLDFSRKDSGDFSGSHNYNRYMGY  217 (378)
Q Consensus       177 wd~~~~~~~~~~--~-~~i~~~~~sp~g~~~~~~~~~~~~~~~~  217 (378)
                      |+..+|+++..+  | ..+++++|+|.....+....+...+..|
T Consensus       467 Whr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIW  510 (519)
T KOG0293|consen  467 WHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIW  510 (519)
T ss_pred             EEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEe
Confidence            999999999999  4 6789999999766544444444444433

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.84  E-value=1.2e-19  Score=166.38  Aligned_cols=175  Identities=14%  Similarity=0.173  Sum_probs=142.2

Q ss_pred             eEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeC-CCCeEEeeccCCCeeEEEE------EEEEEeCCCeEEEEEcC
Q 046394           38 QYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNR-DGTELHCSKEHGEVLKLQF------LLASINKLGQLRYQNVT  110 (378)
Q Consensus        38 ~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~~~l~~------~l~s~~~d~~i~iwd~~  110 (378)
                      +..+.+|.+.|..|.||.++ +|++++.|.+|++|++ ...++.+|....-++|++|      +|++|+-|+.|+||++.
T Consensus       362 ~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~  440 (712)
T KOG0283|consen  362 FCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSIS  440 (712)
T ss_pred             hhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEEecCCeeEEEEecccCCCcEeecccccceEEeecC
Confidence            44578999999999999865 8999999999999995 5567777765555699999      99999999999999998


Q ss_pred             CCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe----------------eeec------CCCEEEEEEec-CCCEEEE
Q 046394          111 MGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT----------------MLCH------QGPVSALAFHP-NGHLMAT  167 (378)
Q Consensus       111 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~----------------~~~h------~~~v~~~~~sp-~g~~l~t  167 (378)
                      ..+.+.-.. -..-|++++|.|||++.++|+.+|.                +..|      ...|+.+.|.| +...+++
T Consensus       441 d~~Vv~W~D-l~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLV  519 (712)
T KOG0283|consen  441 DKKVVDWND-LRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLV  519 (712)
T ss_pred             cCeeEeehh-hhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEE
Confidence            777665443 3488999999999999999999998                1111      23799999998 4446888


Q ss_pred             EECCCeEEEEEcCCceeeeee-----cCCceEEEEecCCCccccCCCCCceE
Q 046394          168 SGKDCKIKIWDLRKYEVLQTL-----PGHAKTLDFSRKDSGDFSGSHNYNRY  214 (378)
Q Consensus       168 ~~~d~~i~iwd~~~~~~~~~~-----~~~i~~~~~sp~g~~~~~~~~~~~~~  214 (378)
                      .+.|..|||||+++..+++.|     ...-....|+.||++.+....+...|
T Consensus       520 TSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VY  571 (712)
T KOG0283|consen  520 TSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVY  571 (712)
T ss_pred             ecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEE
Confidence            889999999999998888888     23457789999999988777554444

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.83  E-value=1.9e-19  Score=142.39  Aligned_cols=192  Identities=11%  Similarity=0.142  Sum_probs=152.6

Q ss_pred             eeeEEEeccceeeeeecccc---eeeEEeecCCCCceEEEEcC--CCCEEEEEeCCCcEEEEeCCCCe---EEeeccCCC
Q 046394           16 EKTWRIKQEAIAREVDILSS---RNQYDIMLPELGPYTLDFTS--SGRYMAAAGCKGYPYFYNRDGTE---LHCSKEHGE   87 (378)
Q Consensus        16 ~~~~~~~~~~~i~~~d~~~~---~~~~~l~~~~~~v~~~~~sp--~g~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~   87 (378)
                      .+...-+.|++|+|+.+...   +.+.+|.+|.++|..++|..  -|.+||+++.||.|.||...+..   ......|..
T Consensus        24 krlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~  103 (299)
T KOG1332|consen   24 KRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSA  103 (299)
T ss_pred             ceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcc
Confidence            45566677888888888665   45788999999999999976  78999999999999999955443   345567776


Q ss_pred             e-eEEEE-------EEEEEeCCCeEEEEEcCCC-c--EEEEEecCCCCeeEEEEcCC---C-----------CEEEEEcC
Q 046394           88 V-LKLQF-------LLASINKLGQLRYQNVTMG-E--IVGNFWTGLGRTDVIRVNPF---N-----------GVVSLGHS  142 (378)
Q Consensus        88 ~-~~l~~-------~l~s~~~d~~i~iwd~~~~-~--~~~~~~~~~~~v~~~~~s~~---~-----------~~l~~~~~  142 (378)
                      . ++++|       .|++++.||.|.|.+.++. .  .......|.-.|++++|.|.   |           ..|++|+.
T Consensus       104 SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGc  183 (299)
T KOG1332|consen  104 SVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGC  183 (299)
T ss_pred             cceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCC
Confidence            5 99999       8999999999999998764 2  22334468888999999997   4           35888888


Q ss_pred             CCe----------------eeecCCCEEEEEEecCC----CEEEEEECCCeEEEEEcCC------ceeeeeecCCceEEE
Q 046394          143 GGT----------------MLCHQGPVSALAFHPNG----HLMATSGKDCKIKIWDLRK------YEVLQTLPGHAKTLD  196 (378)
Q Consensus       143 d~~----------------~~~h~~~v~~~~~sp~g----~~l~t~~~d~~i~iwd~~~------~~~~~~~~~~i~~~~  196 (378)
                      |..                +.+|.+.|..++|.|.-    .+||+||.||+|.||..+.      .+++..|+..+..++
T Consensus       184 Dn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vS  263 (299)
T KOG1332|consen  184 DNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVS  263 (299)
T ss_pred             ccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEE
Confidence            876                78899999999999953    4699999999999998763      234445578899999


Q ss_pred             EecCCCccccC
Q 046394          197 FSRKDSGDFSG  207 (378)
Q Consensus       197 ~sp~g~~~~~~  207 (378)
                      ||+.|.+....
T Consensus       264 WS~sGn~LaVs  274 (299)
T KOG1332|consen  264 WSLSGNILAVS  274 (299)
T ss_pred             EeccccEEEEe
Confidence            99998764443

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.83  E-value=4.3e-18  Score=133.38  Aligned_cols=202  Identities=15%  Similarity=0.120  Sum_probs=154.9

Q ss_pred             CCCCceEEEEcCCCCEEEEEeCCCcEEEEeCC-------C-----Ce-E---EeeccCCCe-eEEEE-----EEEEEeCC
Q 046394           44 PELGPYTLDFTSSGRYMAAAGCKGYPYFYNRD-------G-----TE-L---HCSKEHGEV-LKLQF-----LLASINKL  101 (378)
Q Consensus        44 ~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~-------~-----~~-~---~~~~~~~~~-~~l~~-----~l~s~~~d  101 (378)
                      .+..|.+++|+|.|.+.|+|+...+++|-...       +     .+ .   ..-+.|.+. .|.+|     ++++|++|
T Consensus        31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsnd  110 (350)
T KOG0641|consen   31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSND  110 (350)
T ss_pred             chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCC
Confidence            35789999999999999999999999887521       1     11 1   122456665 99999     99999999


Q ss_pred             CeEEEEEcCCCcE-----EEEEecCCCCeeEEEEcCC----CCEEEEEcCCCe---------------eeecCCCEEEEE
Q 046394          102 GQLRYQNVTMGEI-----VGNFWTGLGRTDVIRVNPF----NGVVSLGHSGGT---------------MLCHQGPVSALA  157 (378)
Q Consensus       102 ~~i~iwd~~~~~~-----~~~~~~~~~~v~~~~~s~~----~~~l~~~~~d~~---------------~~~h~~~v~~~~  157 (378)
                      .+|++.-.....+     -..|.-|.+.|..++|-.+    +.+|++++....               +.+|.+.|.++ 
T Consensus       111 k~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilal-  189 (350)
T KOG0641|consen  111 KTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILAL-  189 (350)
T ss_pred             ceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEE-
Confidence            9999986654322     3356678899999999754    346666655443               77899988886 


Q ss_pred             EecCCCEEEEEECCCeEEEEEcCCceeeeee----------cCCceEEEEecCCCc----------cccCCCCCceEEEe
Q 046394          158 FHPNGHLMATSGKDCKIKIWDLRKYEVLQTL----------PGHAKTLDFSRKDSG----------DFSGSHNYNRYMGY  217 (378)
Q Consensus       158 ~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~----------~~~i~~~~~sp~g~~----------~~~~~~~~~~~~~~  217 (378)
                      ++-+|-.+++|+.|.+|++||++-..++.++          .+.+.+++..|.|+.          .+++.+.+.+++.+
T Consensus       190 yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f  269 (350)
T KOG0641|consen  190 YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRF  269 (350)
T ss_pred             EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeee
Confidence            4446889999999999999999998888887          146889999999986          45566677777888


Q ss_pred             eccCCcceeeeEEcCCCCeEEEecCCCeEE
Q 046394          218 SMVKGYQIGKVSFRPYEDVLGIGHSMGVSG  247 (378)
Q Consensus       218 ~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~  247 (378)
                      .. |...|.++.|||...||.+++.|..+.
T Consensus       270 ~p-hsadir~vrfsp~a~yllt~syd~~ik  298 (350)
T KOG0641|consen  270 HP-HSADIRCVRFSPGAHYLLTCSYDMKIK  298 (350)
T ss_pred             CC-CccceeEEEeCCCceEEEEecccceEE
Confidence            77 899999999999997766666665443

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.83  E-value=7.4e-19  Score=148.53  Aligned_cols=250  Identities=15%  Similarity=0.147  Sum_probs=178.2

Q ss_pred             CCCCCCeeecCCceeeEEEeccceeeeeecc---cceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCC----
Q 046394            3 MPSEGGYLEAEGVEKTWRIKQEAIAREVDIL---SSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRD----   75 (378)
Q Consensus         3 ~~~~~~~l~~~~~~~~~~~~~~~~i~~~d~~---~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~----   75 (378)
                      .++..+.|+++|.|.-+++|.-+.  .-+-.   +-+-...|..|..+|+++.|+|+|..||+|+.+|.|.+|-..    
T Consensus        22 q~n~~~~laT~G~D~~iriW~v~r--~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~   99 (434)
T KOG1009|consen   22 QKNSLNKLATAGGDKDIRIWKVNR--SEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRI   99 (434)
T ss_pred             ccCcccceecccCccceeeeeeee--cCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCC
Confidence            344455777777777666665111  00000   112345678899999999999999999999999999999843    


Q ss_pred             ----C---------CeEEeeccCCCe-eEEEE-----EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCE
Q 046394           76 ----G---------TELHCSKEHGEV-LKLQF-----LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGV  136 (378)
Q Consensus        76 ----~---------~~~~~~~~~~~~-~~l~~-----~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~  136 (378)
                          +         .....+.+|..- ..++|     ++++++.|..+++||+..|+....+..|...+..++|.|-+++
T Consensus       100 ~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qy  179 (434)
T KOG1009|consen  100 FDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQY  179 (434)
T ss_pred             ccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhh
Confidence                2         123456777764 88999     9999999999999999999999999999999999999999999


Q ss_pred             EEEEcCCCe-----------e----------------------eecCC----CEEEEEEecCCCEEEEEEC----CC---
Q 046394          137 VSLGHSGGT-----------M----------------------LCHQG----PVSALAFHPNGHLMATSGK----DC---  172 (378)
Q Consensus       137 l~~~~~d~~-----------~----------------------~~h~~----~v~~~~~sp~g~~l~t~~~----d~---  172 (378)
                      +++-+.|..           .                      ..|..    -...++|+|+|.+|++.+.    ++   
T Consensus       180 v~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~  259 (434)
T KOG1009|consen  180 VASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVF  259 (434)
T ss_pred             hhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCcee
Confidence            999888874           0                      01111    1245689999999987542    22   


Q ss_pred             --eEEEEEcCC-ceeeeee---cCCceEEEEecCC---------------------------CccccCCCCCceEEEeec
Q 046394          173 --KIKIWDLRK-YEVLQTL---PGHAKTLDFSRKD---------------------------SGDFSGSHNYNRYMGYSM  219 (378)
Q Consensus       173 --~i~iwd~~~-~~~~~~~---~~~i~~~~~sp~g---------------------------~~~~~~~~~~~~~~~~~~  219 (378)
                        +.++|+-.. .+++..+   ..+...+.|+|--                           ...+++.++..++.....
T Consensus       260 ~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq~~~P~~~v~n  339 (434)
T KOG1009|consen  260 RNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQTLEPLAVVDN  339 (434)
T ss_pred             eceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecceEEEeccccccceEEEee
Confidence              234454332 2233333   2334455555511                           125667777777776665


Q ss_pred             cCCcceeeeEEcCCCCeEEEecCCCeEEEEEcCCC
Q 046394          220 VKGYQIGKVSFRPYEDVLGIGHSMGVSGILIPGSG  254 (378)
Q Consensus       220 ~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~~~s~  254 (378)
                      -|-.+|++++|++||.+|++++.||+..++..+..
T Consensus       340 ihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~  374 (434)
T KOG1009|consen  340 IHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPW  374 (434)
T ss_pred             eeeeeecceeecCCCcEEEEeccCCceEEEEEcch
Confidence            58889999999999999999999999888764443

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.83  E-value=4.4e-19  Score=159.18  Aligned_cols=230  Identities=14%  Similarity=0.084  Sum_probs=181.2

Q ss_pred             CceeeEEEeccceeeeeecccceee--EEeecCCCCceE-EEEcC-CCCEEEEEeCCCcEEEEe-CCCCeEEeeccCCCe
Q 046394           14 GVEKTWRIKQEAIAREVDILSSRNQ--YDIMLPELGPYT-LDFTS-SGRYMAAAGCKGYPYFYN-RDGTELHCSKEHGEV   88 (378)
Q Consensus        14 ~~~~~~~~~~~~~i~~~d~~~~~~~--~~l~~~~~~v~~-~~~sp-~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~   88 (378)
                      .....+..+.|+++++|+-...+.+  ..+.+|.+-|.+ ++|-+ ++-.|++|+.|++|.+|. ....++..+.+|..-
T Consensus        24 ~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~sn  103 (745)
T KOG0301|consen   24 DGVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSN  103 (745)
T ss_pred             CCeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccc
Confidence            3344566667888899987555433  456667677765 88875 444699999999999999 556788999999975


Q ss_pred             -eEEEE----EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe------------eeecCC
Q 046394           89 -LKLQF----LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT------------MLCHQG  151 (378)
Q Consensus        89 -~~l~~----~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~------------~~~h~~  151 (378)
                       .++..    .+++||.|.++++|-.  +++...+.+|...|++++.-|++ .+++|+.|..            +.+|.+
T Consensus       104 VC~ls~~~~~~~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~~~~l~tf~gHtD  180 (745)
T KOG0301|consen  104 VCSLSIGEDGTLISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKGGTLLKTFSGHTD  180 (745)
T ss_pred             eeeeecCCcCceEecccccceEEecc--hhhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccCCchhhhhccchh
Confidence             66765    8899999999999975  66777899999999999999999 8889999887            889999


Q ss_pred             CEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee--c-CCceEEEEec----------CCCccccCCCCCceEEEee
Q 046394          152 PVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL--P-GHAKTLDFSR----------KDSGDFSGSHNYNRYMGYS  218 (378)
Q Consensus       152 ~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~--~-~~i~~~~~sp----------~g~~~~~~~~~~~~~~~~~  218 (378)
                      -|..+++-|++ .|++|+.||.|++||+ +|.++..+  | ..+.+++..+          |+...+|...  .+.....
T Consensus       181 ~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~  256 (745)
T KOG0301|consen  181 CVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVIT  256 (745)
T ss_pred             heeeeEEecCC-CeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEe
Confidence            99999999875 5899999999999999 77887777  3 5677777433          3334777755  4555555


Q ss_pred             ccCCcceeeeEEcCCCCeEEEecCCCeEEEEEcC
Q 046394          219 MVKGYQIGKVSFRPYEDVLGIGHSMGVSGILIPG  252 (378)
Q Consensus       219 ~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~~~  252 (378)
                      . .+..|+++.+-++|+ +++|++||.+++|...
T Consensus       257 l-PttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~  288 (745)
T KOG0301|consen  257 L-PTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVD  288 (745)
T ss_pred             c-CccceEEEEEeeCCC-EEEeccCceEEEEEec
Confidence            4 566799999998885 6788899999888644

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.82  E-value=5.6e-19  Score=151.43  Aligned_cols=159  Identities=13%  Similarity=0.096  Sum_probs=130.5

Q ss_pred             eccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCC-CeEEeeccCCCe-eEEEE----EE
Q 046394           22 KQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDG-TELHCSKEHGEV-LKLQF----LL   95 (378)
Q Consensus        22 ~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~-~~l~~----~l   95 (378)
                      ..+..+.||+..+.+.+..+.+|.+.|.+++|--..+.|++++.|+.|++|+++. ..+.++.+|.+. .++..    .+
T Consensus       221 g~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~  300 (479)
T KOG0299|consen  221 GRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERC  300 (479)
T ss_pred             CCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhcccce
Confidence            4466778999999999999999999999999988778999999999999999654 456678888875 66666    44


Q ss_pred             E-EEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe------------------------e--ee
Q 046394           96 A-SINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT------------------------M--LC  148 (378)
Q Consensus        96 ~-s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~------------------------~--~~  148 (378)
                      + +|+.|.++++|++. ......+.++.+.+.|++|-.+ ..|++|+.+|.                        +  ..
T Consensus       301 vtVGgrDrT~rlwKi~-eesqlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~  378 (479)
T KOG0299|consen  301 VTVGGRDRTVRLWKIP-EESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVN  378 (479)
T ss_pred             EEeccccceeEEEecc-ccceeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeeecccCceeEeeccccccCCccccc
Confidence            4 45599999999994 3445567788889999998754 46788999998                        1  12


Q ss_pred             cCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCc
Q 046394          149 HQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKY  182 (378)
Q Consensus       149 h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~  182 (378)
                      ++.+|++++..|...++|+|+.+|.|++|-+..+
T Consensus       379 ~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g  412 (479)
T KOG0299|consen  379 GNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDG  412 (479)
T ss_pred             cccceeeeEecccCceEEecCCCCceEEEEecCC
Confidence            2348999999999999999999999999998775

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.82  E-value=1.7e-18  Score=141.46  Aligned_cols=196  Identities=18%  Similarity=0.183  Sum_probs=152.4

Q ss_pred             eeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCC-CeEEeeccCCCeeEEEE--
Q 046394           17 KTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDG-TELHCSKEHGEVLKLQF--   93 (378)
Q Consensus        17 ~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~l~~--   93 (378)
                      ..+...-|+.|+.+|+.++.. ..+..|..+|.||.+++....+++||.|++|++||... .....+.....+.++..  
T Consensus        67 ~~~~G~~dg~vr~~Dln~~~~-~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~g  145 (323)
T KOG1036|consen   67 TIVTGGLDGQVRRYDLNTGNE-DQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVSG  145 (323)
T ss_pred             eEEEeccCceEEEEEecCCcc-eeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCceEEEEeccC
Confidence            566777799999999988876 56778899999999999888999999999999999543 33344554555677777  


Q ss_pred             -EEEEEeCCCeEEEEEcCCCcEEEEEe--cCCCCeeEEEEcCCCCEEEEEcCCCe------------------eeecC--
Q 046394           94 -LLASINKLGQLRYQNVTMGEIVGNFW--TGLGRTDVIRVNPFNGVVSLGHSGGT------------------MLCHQ--  150 (378)
Q Consensus        94 -~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~d~~------------------~~~h~--  150 (378)
                       .|+.|+.|..+.+||+++-....+..  .-.-.+.|+++.|++.-+++++-+|.                  +..|.  
T Consensus       146 ~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~  225 (323)
T KOG1036|consen  146 NRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLS  225 (323)
T ss_pred             CEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecc
Confidence             88889999999999998754333221  12356889999998888899998887                  55564  


Q ss_pred             -------CCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeeecCCceEEEEecCCCccccCCCCCceEEEeeccCCc
Q 046394          151 -------GPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHAKTLDFSRKDSGDFSGSHNYNRYMGYSMVKGY  223 (378)
Q Consensus       151 -------~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~~~~i~~~~~sp~g~~~~~~~~~~~~~~~~~~~~~~  223 (378)
                             .+|++|+|+|-...|+||+.||.|.+||+.+.+.+..+                             .. ...
T Consensus       226 ~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~-----------------------------~~-~~~  275 (323)
T KOG1036|consen  226 EKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQL-----------------------------AK-YET  275 (323)
T ss_pred             cCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhc-----------------------------cC-CCC
Confidence                   47999999998889999999999999999775433322                             11 223


Q ss_pred             ceeeeEEcCCCCeEEEecCC
Q 046394          224 QIGKVSFRPYEDVLGIGHSM  243 (378)
Q Consensus       224 ~v~~~~~sp~g~~l~~~~~~  243 (378)
                      .|.+++|+.+|..||++++-
T Consensus       276 SI~slsfs~dG~~LAia~sy  295 (323)
T KOG1036|consen  276 SISSLSFSMDGSLLAIASSY  295 (323)
T ss_pred             ceEEEEeccCCCeEEEEech
Confidence            47888888888888877653

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.82  E-value=7.6e-20  Score=158.35  Aligned_cols=202  Identities=14%  Similarity=0.101  Sum_probs=154.7

Q ss_pred             ecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCC----CeEEeeccCC---Ce-eEEEE----EEEEEeCCCeEEEEEc
Q 046394           42 MLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDG----TELHCSKEHG---EV-LKLQF----LLASINKLGQLRYQNV  109 (378)
Q Consensus        42 ~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~----~~~~~~~~~~---~~-~~l~~----~l~s~~~d~~i~iwd~  109 (378)
                      -.|..-|.++++|...++++||+ .|.|+|||+.+    .++..+..-.   -+ +|.-+    .|++|+.-.++.|||+
T Consensus       416 L~HGEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDL  494 (705)
T KOG0639|consen  416 LAHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDL  494 (705)
T ss_pred             hccCcEEEEEEecCCcceeEecC-CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeec
Confidence            35666677899999889999997 46899999654    3344444432   23 33333    7888999999999999


Q ss_pred             CCCcEE--EEEecCCCCeeEEEEcCCCCEEEEEcCCCe--------------eeecCCCEEEEEEecCCCEEEEEECCCe
Q 046394          110 TMGEIV--GNFWTGLGRTDVIRVNPFNGVVSLGHSGGT--------------MLCHQGPVSALAFHPNGHLMATSGKDCK  173 (378)
Q Consensus       110 ~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~--------------~~~h~~~v~~~~~sp~g~~l~t~~~d~~  173 (378)
                      ....+.  ..+....-.+.+++.+||.++.+++..||.              +.+|.+.+.||.++++|..|-||+-|++
T Consensus       495 AapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDnt  574 (705)
T KOG0639|consen  495 AAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNT  574 (705)
T ss_pred             cCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccc
Confidence            865543  233333356778999999999999998887              8899999999999999999999999999


Q ss_pred             EEEEEcCCceeeeee--cCCceEEEEecCCCccccCCCCCce----------EEEeeccCCcceeeeEEcCCCCeEEEec
Q 046394          174 IKIWDLRKYEVLQTL--PGHAKTLDFSRKDSGDFSGSHNYNR----------YMGYSMVKGYQIGKVSFRPYEDVLGIGH  241 (378)
Q Consensus       174 i~iwd~~~~~~~~~~--~~~i~~~~~sp~g~~~~~~~~~~~~----------~~~~~~~~~~~v~~~~~sp~g~~l~~~~  241 (378)
                      ||.||++.+..+...  .+.|-++.++|.+.+..........          +..+ . |.+.|.++.|.+.|+++++.+
T Consensus       575 vRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyqlh-l-heScVLSlKFa~cGkwfvStG  652 (705)
T KOG0639|consen  575 VRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLH-L-HESCVLSLKFAYCGKWFVSTG  652 (705)
T ss_pred             eeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCCccceeec-c-cccEEEEEEecccCceeeecC
Confidence            999999999887666  6889999999999985554433322          2222 2 788899999999997776666


Q ss_pred             CCCeE
Q 046394          242 SMGVS  246 (378)
Q Consensus       242 ~~g~~  246 (378)
                      .|...
T Consensus       653 kDnlL  657 (705)
T KOG0639|consen  653 KDNLL  657 (705)
T ss_pred             chhhh
Confidence            66533

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.82  E-value=3.2e-18  Score=139.95  Aligned_cols=203  Identities=18%  Similarity=0.239  Sum_probs=151.8

Q ss_pred             CCCceEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEeeccCCCe-eEEEE----EEEEEeCCCeEEEEEcCCCcEEEEEe
Q 046394           45 ELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTELHCSKEHGEV-LKLQF----LLASINKLGQLRYQNVTMGEIVGNFW  119 (378)
Q Consensus        45 ~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~l~~----~l~s~~~d~~i~iwd~~~~~~~~~~~  119 (378)
                      ...|.++.|+|.+..|++++.||++++||.....+.....|..+ .+++|    .+++|+.||.|+.+|+.++... .+.
T Consensus        13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~~~-~ig   91 (323)
T KOG1036|consen   13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFADESTIVTGGLDGQVRRYDLNTGNED-QIG   91 (323)
T ss_pred             hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccCCceEEEeccCceEEEEEecCCcce-eec
Confidence            57899999999999999999999999999776666655566666 99999    8999999999999999887754 455


Q ss_pred             cCCCCeeEEEEcCCCCEEEEEcCCCe-------------eeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeee
Q 046394          120 TGLGRTDVIRVNPFNGVVSLGHSGGT-------------MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQ  186 (378)
Q Consensus       120 ~~~~~v~~~~~s~~~~~l~~~~~d~~-------------~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~  186 (378)
                      .|...+.||.+++-...+++|+-|+.             .......|.++..+  |+.|+.|+.|..|.+||+++.....
T Consensus        92 th~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~~~~~  169 (323)
T KOG1036|consen   92 THDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVS--GNRLVVGTSDRKVLIYDLRNLDEPF  169 (323)
T ss_pred             cCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCceEEEEecc--CCEEEEeecCceEEEEEcccccchh
Confidence            78899999999999999999999988             11223467777664  7789999999999999999866543


Q ss_pred             ee-----cCCceEEEEecCCCc------------cccCCC--CCceEEEeec--------cCCcceeeeEEcCCCCeEEE
Q 046394          187 TL-----PGHAKTLDFSRKDSG------------DFSGSH--NYNRYMGYSM--------VKGYQIGKVSFRPYEDVLGI  239 (378)
Q Consensus       187 ~~-----~~~i~~~~~sp~g~~------------~~~~~~--~~~~~~~~~~--------~~~~~v~~~~~sp~g~~l~~  239 (378)
                      ..     .-.+.++++-|++.-            ...+..  ....-+.++.        ....||++++|+|--..||+
T Consensus       170 q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaT  249 (323)
T KOG1036|consen  170 QRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFAT  249 (323)
T ss_pred             hhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEe
Confidence            32     457888998885431            111111  0011122222        01248999999999877777


Q ss_pred             ecCCCeEEEEE
Q 046394          240 GHSMGVSGILI  250 (378)
Q Consensus       240 ~~~~g~~~~~~  250 (378)
                      |+.||++.+|.
T Consensus       250 gGsDG~V~~Wd  260 (323)
T KOG1036|consen  250 GGSDGIVNIWD  260 (323)
T ss_pred             cCCCceEEEcc
Confidence            77777665554

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.82  E-value=5.7e-18  Score=146.91  Aligned_cols=192  Identities=15%  Similarity=0.177  Sum_probs=144.2

Q ss_pred             eeeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCCC------------eEE-ee
Q 046394           16 EKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGT------------ELH-CS   82 (378)
Q Consensus        16 ~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~------------~~~-~~   82 (378)
                      +.++...+++.|.+|+..+.+-......|+++|++++.-.+|.+ ++|+.|..|..||-+-+            .++ .+
T Consensus       258 gdviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gtl-lSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~  336 (626)
T KOG2106|consen  258 GDVITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTL-LSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVA  336 (626)
T ss_pred             CCEEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccE-eecCccceEEeccccccccccccCchhcCCeeEEe
Confidence            34566667899999999888888887899999999999999975 55999999999992111            111 11


Q ss_pred             c----------------------------cCCCe-eEEEE-----EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEE
Q 046394           83 K----------------------------EHGEV-LKLQF-----LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVI  128 (378)
Q Consensus        83 ~----------------------------~~~~~-~~l~~-----~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~  128 (378)
                      .                            +|.+. ..++.     +++|++.|+++++|+  ..++..+.. -..++.|+
T Consensus       337 e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~  413 (626)
T KOG2106|consen  337 EGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECA  413 (626)
T ss_pred             cCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE-ecCceeEe
Confidence            1                            22221 22222     899999999999999  444444432 34788999


Q ss_pred             EEcCCCCEEEEEcCCCe-------------eeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCC-ceeeeee----cC
Q 046394          129 RVNPFNGVVSLGHSGGT-------------MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRK-YEVLQTL----PG  190 (378)
Q Consensus       129 ~~s~~~~~l~~~~~d~~-------------~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~-~~~~~~~----~~  190 (378)
                      .|+|.| .+|+|+..|.             +...+.++++++|+|+|.+||.|+.|+.|+||-+.. +.....+    .+
T Consensus       414 ~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs  492 (626)
T KOG2106|consen  414 DFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGS  492 (626)
T ss_pred             eccCcc-eEEEeeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCc
Confidence            999999 9999998887             233378999999999999999999999999998865 4444444    47


Q ss_pred             CceEEEEecCCCccccCCCCCc
Q 046394          191 HAKTLDFSRKDSGDFSGSHNYN  212 (378)
Q Consensus       191 ~i~~~~~sp~g~~~~~~~~~~~  212 (378)
                      +|+.+.||+|+++...+..+.+
T Consensus       493 ~ithLDwS~Ds~~~~~~S~d~e  514 (626)
T KOG2106|consen  493 PITHLDWSSDSQFLVSNSGDYE  514 (626)
T ss_pred             eeEEeeecCCCceEEeccCceE
Confidence            8999999999997444433333

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.81  E-value=2.9e-18  Score=153.89  Aligned_cols=239  Identities=15%  Similarity=0.105  Sum_probs=173.2

Q ss_pred             CCeeecCCceeeEEEeccceeeeeeccc------------c----eee----------EEeecCCCCceEEEEcCCCCEE
Q 046394            7 GGYLEAEGVEKTWRIKQEAIAREVDILS------------S----RNQ----------YDIMLPELGPYTLDFTSSGRYM   60 (378)
Q Consensus         7 ~~~l~~~~~~~~~~~~~~~~i~~~d~~~------------~----~~~----------~~l~~~~~~v~~~~~sp~g~~l   60 (378)
                      .-+|++++.|+++++|.   |.+++...            .    ...          ..+.+|.+.|+++.|+|.+..|
T Consensus       206 ~~~laS~SQD~yIRiW~---i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~L  282 (764)
T KOG1063|consen  206 DLLLASSSQDRYIRIWR---IVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDL  282 (764)
T ss_pred             cEEEEecCCceEEEEEE---EEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhh
Confidence            45677777888888876   44444211            0    001          1134899999999999999999


Q ss_pred             EEEeCCCcEEEEeCCCC---eEE--e---eccCCC-eeEEEE-----EEEEEeCCCeEEEEEcCCC---cEEEEEecCCC
Q 046394           61 AAAGCKGYPYFYNRDGT---ELH--C---SKEHGE-VLKLQF-----LLASINKLGQLRYQNVTMG---EIVGNFWTGLG  123 (378)
Q Consensus        61 ~~~~~dg~i~iwd~~~~---~~~--~---~~~~~~-~~~l~~-----~l~s~~~d~~i~iwd~~~~---~~~~~~~~~~~  123 (378)
                      ++++.|.++.+|.....   =+.  .   +.+..+ ..+..|     .+++-+..|-.++|-..+.   .....+.+|..
T Consensus       283 LSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~  362 (764)
T KOG1063|consen  283 LSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVD  362 (764)
T ss_pred             eecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccccc
Confidence            99999999999995332   111  1   222222 255555     6888888999999983321   23344568899


Q ss_pred             CeeEEEEcCCCCEEEEEcCCCe----------------------------------------------------------
Q 046394          124 RTDVIRVNPFNGVVSLGHSGGT----------------------------------------------------------  145 (378)
Q Consensus       124 ~v~~~~~s~~~~~l~~~~~d~~----------------------------------------------------------  145 (378)
                      .|..++|+|.|.+|++.+.|.+                                                          
T Consensus       363 ~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~  442 (764)
T KOG1063|consen  363 GVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVK  442 (764)
T ss_pred             cceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeecccceeeeeecCcHHHHH
Confidence            9999999999999999998877                                                          


Q ss_pred             ------------------------------------------------------------------------------ee
Q 046394          146 ------------------------------------------------------------------------------ML  147 (378)
Q Consensus       146 ------------------------------------------------------------------------------~~  147 (378)
                                                                                                    +.
T Consensus       443 ~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLY  522 (764)
T KOG1063|consen  443 SLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLY  522 (764)
T ss_pred             HHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhc
Confidence                                                                                          88


Q ss_pred             ecCCCEEEEEEecCCCEEEEEECCC-----eEEEEEcCCceeeeee--c-CCceEEEEecCCCccccCCCCCc-------
Q 046394          148 CHQGPVSALAFHPNGHLMATSGKDC-----KIKIWDLRKYEVLQTL--P-GHAKTLDFSRKDSGDFSGSHNYN-------  212 (378)
Q Consensus       148 ~h~~~v~~~~~sp~g~~l~t~~~d~-----~i~iwd~~~~~~~~~~--~-~~i~~~~~sp~g~~~~~~~~~~~-------  212 (378)
                      ||...|.+++.+|+|+++||++...     .|++|+..+......+  | -.|+.+.|||||++.+.-.+++.       
T Consensus       523 GHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~  602 (764)
T KOG1063|consen  523 GHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQ  602 (764)
T ss_pred             cCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeee
Confidence            9999999999999999999998654     6999999987777766  4 57999999999998443322221       


Q ss_pred             -------eEEEeeccCCcceeeeEEcCCCCeEEEecCCCeEEEE
Q 046394          213 -------RYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGIL  249 (378)
Q Consensus       213 -------~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~  249 (378)
                             .+...+. |..-|.++.|+|++.++|+++.|..+.+|
T Consensus       603 ~~~~~e~~fa~~k~-HtRIIWdcsW~pde~~FaTaSRDK~VkVW  645 (764)
T KOG1063|consen  603 EDIKDEFRFACLKA-HTRIIWDCSWSPDEKYFATASRDKKVKVW  645 (764)
T ss_pred             cccchhhhhccccc-cceEEEEcccCcccceeEEecCCceEEEE
Confidence                   1112334 88889999999999666666555544444

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.81  E-value=3.7e-18  Score=139.95  Aligned_cols=231  Identities=12%  Similarity=-0.002  Sum_probs=170.5

Q ss_pred             eEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeeccCCCeeEEEE---
Q 046394           18 TWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKEHGEVLKLQF---   93 (378)
Q Consensus        18 ~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~~~l~~---   93 (378)
                      ......+|.+-+||+.|......+.+|..+|.|++||+||+.|+|+|.|..|.+|| ..|.+++.++-...+....|   
T Consensus        38 lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf~spv~~~q~hp~  117 (405)
T KOG1273|consen   38 LAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPR  117 (405)
T ss_pred             eeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEccCccceeeeccc
Confidence            44556789999999999998889999999999999999999999999999999999 78888888887777777777   


Q ss_pred             ---EEEEEeCCCeEEEEEcCCCcEEEEEec-C----CCCeeEEEEcCCCCEEEEEcCCCe---eeec------------C
Q 046394           94 ---LLASINKLGQLRYQNVTMGEIVGNFWT-G----LGRTDVIRVNPFNGVVSLGHSGGT---MLCH------------Q  150 (378)
Q Consensus        94 ---~l~s~~~d~~i~iwd~~~~~~~~~~~~-~----~~~v~~~~~s~~~~~l~~~~~d~~---~~~h------------~  150 (378)
                         .++++-.+..-.+.++..+... .+.. .    .....+..|.+.|+++++|...|.   +..|            .
T Consensus       118 k~n~~va~~~~~sp~vi~~s~~~h~-~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~  196 (405)
T KOG1273|consen  118 KRNKCVATIMEESPVVIDFSDPKHS-VLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSV  196 (405)
T ss_pred             cCCeEEEEEecCCcEEEEecCCcee-eccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechh
Confidence               3333333333445555442211 1111 1    122334568999999999999998   1111            2


Q ss_pred             CCEEEEEEecCCCEEEEEECCCeEEEEEcCC-------ce--eeeee-----cCCceEEEEecCCCc-----------cc
Q 046394          151 GPVSALAFHPNGHLMATSGKDCKIKIWDLRK-------YE--VLQTL-----PGHAKTLDFSRKDSG-----------DF  205 (378)
Q Consensus       151 ~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~-------~~--~~~~~-----~~~i~~~~~sp~g~~-----------~~  205 (378)
                      ..|..+.|+..|.+|++-+.|..||.|++..       ++  +.+.+     .....+++||.+|.|           .+
T Consensus       197 ~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYI  276 (405)
T KOG1273|consen  197 QAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYI  276 (405)
T ss_pred             eeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEE
Confidence            4567788999999999999999999999862       12  22333     356688999999986           67


Q ss_pred             cCCCCCceEEEeeccCCcceeeeEEcCCCCeEEEecCCCeEEEEE
Q 046394          206 SGSHNYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILI  250 (378)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~  250 (378)
                      |....+.++..+.|..+....++.|+|-...+++- ..|.+.+|.
T Consensus       277 WE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~  320 (405)
T KOG1273|consen  277 WEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWA  320 (405)
T ss_pred             EecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEE
Confidence            88778888888766445678899999998776665 555555554

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.81  E-value=2e-18  Score=149.65  Aligned_cols=221  Identities=11%  Similarity=0.061  Sum_probs=164.9

Q ss_pred             Eeccceeeeeecccce---eeEEeec--CCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEE---eeccCCC-eeEE
Q 046394           21 IKQEAIAREVDILSSR---NQYDIML--PELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTELH---CSKEHGE-VLKL   91 (378)
Q Consensus        21 ~~~~~~i~~~d~~~~~---~~~~l~~--~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~-~~~l   91 (378)
                      -...+-|+|||+....   .+..|..  ...-+.++.++|||+.|++|+.-.++.|||+...-.+   .+..... ..++
T Consensus       436 TgGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyAL  515 (705)
T KOG0639|consen  436 TGGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYAL  515 (705)
T ss_pred             ecCCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhh
Confidence            3446889999997553   3344443  3456889999999999999999999999995432221   1222111 1334


Q ss_pred             EE-----EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe-----------e--eecCCCE
Q 046394           92 QF-----LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT-----------M--LCHQGPV  153 (378)
Q Consensus        92 ~~-----~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~-----------~--~~h~~~v  153 (378)
                      +.     +.++|..||.|.|||+.+...++.|.+|.+.+.||.+++||..|.+|+.|.+           +  ......|
T Consensus       516 a~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQI  595 (705)
T KOG0639|consen  516 AISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQI  595 (705)
T ss_pred             hcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhhhhh
Confidence            44     7778889999999999999999999999999999999999999999999998           2  2335679


Q ss_pred             EEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee---cCCceEEEEecCCCcccc----------CCCCCceEEEeecc
Q 046394          154 SALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL---PGHAKTLDFSRKDSGDFS----------GSHNYNRYMGYSMV  220 (378)
Q Consensus       154 ~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~~sp~g~~~~~----------~~~~~~~~~~~~~~  220 (378)
                      .++..+|++.+++.|-.++.+-|......+ -+.+   .+.|-++.|++.|++.+.          ...-+..++...  
T Consensus       596 fSLg~cP~~dWlavGMens~vevlh~skp~-kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk--  672 (705)
T KOG0639|consen  596 FSLGYCPTGDWLAVGMENSNVEVLHTSKPE-KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK--  672 (705)
T ss_pred             eecccCCCccceeeecccCcEEEEecCCcc-ceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeecc--
Confidence            999999999999999999988887765433 2333   477899999999997443          333333333332  


Q ss_pred             CCcceeeeEEcCCCCeEEEecCCC
Q 046394          221 KGYQIGKVSFRPYEDVLGIGHSMG  244 (378)
Q Consensus       221 ~~~~v~~~~~sp~g~~l~~~~~~g  244 (378)
                      ..+.|.++..|.|.+++++|+.+.
T Consensus       673 E~SsVlsCDIS~ddkyIVTGSGdk  696 (705)
T KOG0639|consen  673 ESSSVLSCDISFDDKYIVTGSGDK  696 (705)
T ss_pred             ccCcceeeeeccCceEEEecCCCc
Confidence            467899999999996666666554

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.81  E-value=1.1e-18  Score=146.08  Aligned_cols=187  Identities=18%  Similarity=0.237  Sum_probs=131.3

Q ss_pred             ccceeeeeecccceee---EEeecCCCCceEEEEcCCC-CEEEEEeCCCcEEEEeC-CC--CeEEeeccCCC-eeEEEE-
Q 046394           23 QEAIAREVDILSSRNQ---YDIMLPELGPYTLDFTSSG-RYMAAAGCKGYPYFYNR-DG--TELHCSKEHGE-VLKLQF-   93 (378)
Q Consensus        23 ~~~~i~~~d~~~~~~~---~~l~~~~~~v~~~~~sp~g-~~l~~~~~dg~i~iwd~-~~--~~~~~~~~~~~-~~~l~~-   93 (378)
                      +...|++|...++.-.   ..+.+|+..|-.++|||.. ..||+||.||+|+|||. .+  ......+.|.+ ++.+.| 
T Consensus       232 c~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWn  311 (440)
T KOG0302|consen  232 CVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWN  311 (440)
T ss_pred             cccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEcc
Confidence            3456777777777543   3466799999999999965 58999999999999994 33  12233367765 499999 


Q ss_pred             ----EEEEEeCCCeEEEEEcCC---CcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCeeeecCCCEEEEEEec-CCCEE
Q 046394           94 ----LLASINKLGQLRYQNVTM---GEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGTMLCHQGPVSALAFHP-NGHLM  165 (378)
Q Consensus        94 ----~l~s~~~d~~i~iwd~~~---~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~~~~h~~~v~~~~~sp-~g~~l  165 (378)
                          +||+|+.||+++|||+++   ++++.+|.                            .|..+|++|.|+| +...|
T Consensus       312 r~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk----------------------------~Hk~pItsieW~p~e~s~i  363 (440)
T KOG0302|consen  312 RREPLLASGGDDGTLSIWDLRQFKSGQPVATFK----------------------------YHKAPITSIEWHPHEDSVI  363 (440)
T ss_pred             CCcceeeecCCCceEEEEEhhhccCCCcceeEE----------------------------eccCCeeEEEeccccCceE
Confidence                899999999999999986   44566654                            6888999999999 45678


Q ss_pred             EEEECCCeEEEEEcCCceeeeeecCCceEEEEecCCCccccCCCCCceEEEeeccCCcceeeeEEcCCCC-eEEEecCCC
Q 046394          166 ATSGKDCKIKIWDLRKYEVLQTLPGHAKTLDFSRKDSGDFSGSHNYNRYMGYSMVKGYQIGKVSFRPYED-VLGIGHSMG  244 (378)
Q Consensus       166 ~t~~~d~~i~iwd~~~~~~~~~~~~~i~~~~~sp~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~-~l~~~~~~g  244 (378)
                      +++|.|.+|.|||+.--.-.....      .....+   +-+ -..++++.+.+  ...|..|.|++.-. +|++.+.+|
T Consensus       364 aasg~D~QitiWDlsvE~D~ee~~------~~a~~~---L~d-lPpQLLFVHqG--Qke~KevhWH~QiPG~lvsTa~dG  431 (440)
T KOG0302|consen  364 AASGEDNQITIWDLSVEADEEEID------QEAAEG---LQD-LPPQLLFVHQG--QKEVKEVHWHRQIPGLLVSTAIDG  431 (440)
T ss_pred             EeccCCCcEEEEEeeccCChhhhc------cccccc---hhc-CCceeEEEecc--hhHhhhheeccCCCCeEEEecccc
Confidence            899999999999986422110000      000000   001 13455666655  45689999999864 677777788


Q ss_pred             eEEEEE
Q 046394          245 VSGILI  250 (378)
Q Consensus       245 ~~~~~~  250 (378)
                      + ++|.
T Consensus       432 f-nVfk  436 (440)
T KOG0302|consen  432 F-NVFK  436 (440)
T ss_pred             e-eEEE
Confidence            6 4444

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.81  E-value=6.6e-19  Score=157.26  Aligned_cols=164  Identities=16%  Similarity=0.182  Sum_probs=143.1

Q ss_pred             eEEEeccceeeeeecccceeeEE-eecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeC-CCCeEEeeccCCCe-eEEEE-
Q 046394           18 TWRIKQEAIAREVDILSSRNQYD-IMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNR-DGTELHCSKEHGEV-LKLQF-   93 (378)
Q Consensus        18 ~~~~~~~~~i~~~d~~~~~~~~~-l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~-~~l~~-   93 (378)
                      ...+..++.|..+|+...+.... +.+|...|..+.|++|+.++|+|+.|+.+.|||. ...++..+..|.+. .+++| 
T Consensus       273 lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awc  352 (484)
T KOG0305|consen  273 LSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWC  352 (484)
T ss_pred             EEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeC
Confidence            34455678888899988877666 8899999999999999999999999999999994 66778889999886 99999 


Q ss_pred             -----EEEEEe--CCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe----------------eeecC
Q 046394           94 -----LLASIN--KLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT----------------MLCHQ  150 (378)
Q Consensus        94 -----~l~s~~--~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~----------------~~~h~  150 (378)
                           +||+|+  .|+.|++||..++..+..+. ....|..|.|++..+.|+++.....                +.+|.
T Consensus       353 P~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~  431 (484)
T KOG0305|consen  353 PWQSGLLATGGGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHT  431 (484)
T ss_pred             CCccCceEEcCCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCc
Confidence                 888876  49999999999999988875 4588999999999988877765443                78999


Q ss_pred             CCEEEEEEecCCCEEEEEECCCeEEEEEcCCc
Q 046394          151 GPVSALAFHPNGHLMATSGKDCKIKIWDLRKY  182 (378)
Q Consensus       151 ~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~  182 (378)
                      ..|..++++|||..+++|+.|.++++|++-..
T Consensus       432 ~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  432 SRVLYLALSPDGETIVTGAADETLRFWNLFDE  463 (484)
T ss_pred             ceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence            99999999999999999999999999998653

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.81  E-value=4.4e-19  Score=158.05  Aligned_cols=196  Identities=14%  Similarity=0.187  Sum_probs=165.5

Q ss_pred             EEEEc-CCCCEEEEEeCCCcEEEEeCC---C----CeEEeeccCCCe-eEEEE-----EEEEEeCCCeEEEEEcCCC--c
Q 046394           50 TLDFT-SSGRYMAAAGCKGYPYFYNRD---G----TELHCSKEHGEV-LKLQF-----LLASINKLGQLRYQNVTMG--E  113 (378)
Q Consensus        50 ~~~~s-p~g~~l~~~~~dg~i~iwd~~---~----~~~~~~~~~~~~-~~l~~-----~l~s~~~d~~i~iwd~~~~--~  113 (378)
                      .+..+ |+++||++||.||.|++|+..   +    ..+..+..|.+. +++..     .|+++|.|.+|++|+...+  -
T Consensus        29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~  108 (735)
T KOG0308|consen   29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTF  108 (735)
T ss_pred             hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcch
Confidence            44444 467889999999999999942   2    135667788775 65555     8999999999999999877  5


Q ss_pred             EEEEEecCCCCeeEEEE-cCCCCEEEEEcCCCe------------------------ee-ecCCCEEEEEEecCCCEEEE
Q 046394          114 IVGNFWTGLGRTDVIRV-NPFNGVVSLGHSGGT------------------------ML-CHQGPVSALAFHPNGHLMAT  167 (378)
Q Consensus       114 ~~~~~~~~~~~v~~~~~-s~~~~~l~~~~~d~~------------------------~~-~h~~~v~~~~~sp~g~~l~t  167 (378)
                      +..++..|.+.|.|+++ .++..++|+|+-|+.                        +. ++..+|.+++.++.|..|++
T Consensus       109 c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivs  188 (735)
T KOG0308|consen  109 CMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVS  188 (735)
T ss_pred             hHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEe
Confidence            77788899999999999 788889999999887                        22 78889999999999999999


Q ss_pred             EECCCeEEEEEcCCceeeeee--c-CCceEEEEecCCC----------ccccCCCCCceEEEeeccCCcceeeeEEcCCC
Q 046394          168 SGKDCKIKIWDLRKYEVLQTL--P-GHAKTLDFSRKDS----------GDFSGSHNYNRYMGYSMVKGYQIGKVSFRPYE  234 (378)
Q Consensus       168 ~~~d~~i~iwd~~~~~~~~~~--~-~~i~~~~~sp~g~----------~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g  234 (378)
                      |+..+.|++||.++++.+..+  | ..|..+..++||.          +.+|+.....++.++.. |...|+++.-+|+=
T Consensus       189 Ggtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~v-H~e~VWaL~~~~sf  267 (735)
T KOG0308|consen  189 GGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIV-HKEGVWALQSSPSF  267 (735)
T ss_pred             cCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEe-ccCceEEEeeCCCc
Confidence            999999999999999888877  3 6677777777664          58999999999999888 88889999999999


Q ss_pred             CeEEEecCCCeE
Q 046394          235 DVLGIGHSMGVS  246 (378)
Q Consensus       235 ~~l~~~~~~g~~  246 (378)
                      ..+.+|+.+|.+
T Consensus       268 ~~vYsG~rd~~i  279 (735)
T KOG0308|consen  268 THVYSGGRDGNI  279 (735)
T ss_pred             ceEEecCCCCcE
Confidence            999999999954

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.80  E-value=2.6e-18  Score=151.91  Aligned_cols=212  Identities=14%  Similarity=0.156  Sum_probs=161.5

Q ss_pred             eeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeeccCCCeeEEEE-------EEEEEeCCCeEEEE
Q 046394           36 RNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKEHGEVLKLQF-------LLASINKLGQLRYQ  107 (378)
Q Consensus        36 ~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~~~l~~-------~l~s~~~d~~i~iw  107 (378)
                      .+...+.+|.+.|.||...|.|.+|++|+.||+|+||. .+|.++.++.....+.+++|       +||++-... +.|.
T Consensus       391 ~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~-~~iv  469 (733)
T KOG0650|consen  391 RCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGEC-VLIV  469 (733)
T ss_pred             eeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCc-eEEe
Confidence            34567889999999999999999999999999999999 78999988877777799999       444433322 3333


Q ss_pred             EcCCC-------------------------------------cEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe-----
Q 046394          108 NVTMG-------------------------------------EIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT-----  145 (378)
Q Consensus       108 d~~~~-------------------------------------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~-----  145 (378)
                      +..-|                                     .-+.....|...|..+.|+..|.||++...++.     
T Consensus       470 np~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vl  549 (733)
T KOG0650|consen  470 NPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVL  549 (733)
T ss_pred             CccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEE
Confidence            32111                                     012233346678999999999999999888665     


Q ss_pred             ------------eeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee---cCCceEEEEecCCCccccCCC-
Q 046394          146 ------------MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL---PGHAKTLDFSRKDSGDFSGSH-  209 (378)
Q Consensus       146 ------------~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~~sp~g~~~~~~~~-  209 (378)
                                  +....+.|.++.|+|.-.+|+.++. ..|+|||+....++..+   ...+.+++.+|.|...+.... 
T Consensus       550 iHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d  628 (733)
T KOG0650|consen  550 IHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYD  628 (733)
T ss_pred             EEecccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCC
Confidence                        3344678999999998888888874 56999999988887777   357899999998875332221 


Q ss_pred             ----------CCceEEEeeccCCcceeeeEEcCCCCeEEEecCCCeEEEEE
Q 046394          210 ----------NYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILI  250 (378)
Q Consensus       210 ----------~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~  250 (378)
                                ...++..+.. |...|++|+|++.-.++++|++||.+.++.
T Consensus       629 ~k~~WfDldlsskPyk~lr~-H~~avr~Va~H~ryPLfas~sdDgtv~Vfh  678 (733)
T KOG0650|consen  629 KKMCWFDLDLSSKPYKTLRL-HEKAVRSVAFHKRYPLFASGSDDGTVIVFH  678 (733)
T ss_pred             CeeEEEEcccCcchhHHhhh-hhhhhhhhhhccccceeeeecCCCcEEEEe
Confidence                      2246666666 888999999999999999999999776553

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.80  E-value=3e-18  Score=139.68  Aligned_cols=191  Identities=16%  Similarity=0.154  Sum_probs=154.7

Q ss_pred             ceeeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCC--EEEEEeCCCcEEEEe-CCCCeEEeeccCCCeeEE
Q 046394           15 VEKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGR--YMAAAGCKGYPYFYN-RDGTELHCSKEHGEVLKL   91 (378)
Q Consensus        15 ~~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~--~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~~~l   91 (378)
                      ..+.+....|+.+++||+.+++ +..+..|..+|.++.|-+...  +|+|||.|.+|+.|| ....++.++.-...+.++
T Consensus        84 gskVf~g~~Dk~~k~wDL~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~  162 (347)
T KOG0647|consen   84 GSKVFSGGCDKQAKLWDLASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAA  162 (347)
T ss_pred             CceEEeeccCCceEEEEccCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeeh
Confidence            3556667778999999999995 578899999999999987665  899999999999999 667788888877777666


Q ss_pred             EE---EEEEEeCCCeEEEEEcCCCcEEEE-E-ecCCCCeeEEEEcCCCCEEEEEcCCCe----------------eeecC
Q 046394           92 QF---LLASINKLGQLRYQNVTMGEIVGN-F-WTGLGRTDVIRVNPFNGVVSLGHSGGT----------------MLCHQ  150 (378)
Q Consensus        92 ~~---~l~s~~~d~~i~iwd~~~~~~~~~-~-~~~~~~v~~~~~s~~~~~l~~~~~d~~----------------~~~h~  150 (378)
                      ..   +++.+..+..|.+|+++++..... . ....-.+.|++..++....+.|+-.|.                +..|.
T Consensus       163 Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR  242 (347)
T KOG0647|consen  163 DVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHR  242 (347)
T ss_pred             hccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEec
Confidence            66   788888899999999977543221 1 112356889999999988888888877                55665


Q ss_pred             ---------CCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee---cCCceEEEEecCCCcccc
Q 046394          151 ---------GPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL---PGHAKTLDFSRKDSGDFS  206 (378)
Q Consensus       151 ---------~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~~sp~g~~~~~  206 (378)
                               ..|++|+|+|.-..|+|+|.||++.+||-.....+.+.   ..+|++.+|+.+|.+.++
T Consensus       243 ~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaY  310 (347)
T KOG0647|consen  243 STNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAY  310 (347)
T ss_pred             cCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEE
Confidence                     25788999998889999999999999998877767665   589999999999987544

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.80  E-value=1.2e-17  Score=136.62  Aligned_cols=104  Identities=10%  Similarity=0.050  Sum_probs=83.5

Q ss_pred             ecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeC-CC----CeEEeeccCCCe-eEEEE-------EEEEEeCCCeEEEEE
Q 046394           42 MLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNR-DG----TELHCSKEHGEV-LKLQF-------LLASINKLGQLRYQN  108 (378)
Q Consensus        42 ~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~-~~----~~~~~~~~~~~~-~~l~~-------~l~s~~~d~~i~iwd  108 (378)
                      .+|..-|.++.|.+-|+.+|+|+.|++|.|||. +.    .+....+.|.+. ..+.|       .+|+|+.|+++.||.
T Consensus        10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE   89 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE   89 (361)
T ss_pred             cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence            467788999999999999999999999999993 22    234557888876 88888       899999999999997


Q ss_pred             cCC------C---cEEEEEecCCCCeeEEEEcCC--CCEEEEEcCCCe
Q 046394          109 VTM------G---EIVGNFWTGLGRTDVIRVNPF--NGVVSLGHSGGT  145 (378)
Q Consensus       109 ~~~------~---~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~d~~  145 (378)
                      -..      +   ....++......|+.+.|.|.  |-.+|+++.||.
T Consensus        90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~  137 (361)
T KOG2445|consen   90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGI  137 (361)
T ss_pred             ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcE
Confidence            521      1   234456667788999999985  568889999998

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.80  E-value=4.7e-18  Score=155.59  Aligned_cols=187  Identities=14%  Similarity=0.210  Sum_probs=144.5

Q ss_pred             eeeEEEec-cceeeeeeccccee-eEEeec-----CCCCceEEEEcCCCCEEEEEeCCCcEEEEeC-CCCeEEee---cc
Q 046394           16 EKTWRIKQ-EAIAREVDILSSRN-QYDIML-----PELGPYTLDFTSSGRYMAAAGCKGYPYFYNR-DGTELHCS---KE   84 (378)
Q Consensus        16 ~~~~~~~~-~~~i~~~d~~~~~~-~~~l~~-----~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~-~~~~~~~~---~~   84 (378)
                      +..+.... +...+.|+...... .+.|..     -...+++++.++.|++.+.|...|.|-+|++ +|-....+   ..
T Consensus       412 ~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~a  491 (910)
T KOG1539|consen  412 DNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPA  491 (910)
T ss_pred             cceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCcc
Confidence            34444433 46677888876655 344433     2357889999999999999999999999995 45445556   47


Q ss_pred             CCCe-eEEEE-----EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe-------------
Q 046394           85 HGEV-LKLQF-----LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT-------------  145 (378)
Q Consensus        85 ~~~~-~~l~~-----~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~-------------  145 (378)
                      |.+. ++++.     .+++++.+|.+.+||......+..+.. ...+.++.++.....++++.++-.             
T Consensus       492 h~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l-~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR  570 (910)
T KOG1539|consen  492 HKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRL-GSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVR  570 (910)
T ss_pred             ccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeecc-CCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhH
Confidence            7765 77777     899999999999999988887777653 467888899998888888887766             


Q ss_pred             -eeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee--cCCceEEEEecCCCc
Q 046394          146 -MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL--PGHAKTLDFSRKDSG  203 (378)
Q Consensus       146 -~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~--~~~i~~~~~sp~g~~  203 (378)
                       +.+|.+.|++++|||||++|++++.|++|++||+.++.++-.+  ..++.++.|||+|.+
T Consensus       571 ~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~  631 (910)
T KOG1539|consen  571 EFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDF  631 (910)
T ss_pred             HhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecCCcceeeEECCCCCE
Confidence             7899999999999999999999999999999999998877654  344444444444443

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.80  E-value=1.6e-18  Score=151.33  Aligned_cols=226  Identities=15%  Similarity=0.140  Sum_probs=170.6

Q ss_pred             ceeeEEEeccceeeeeecccceeeEEeecCCCCce-EEEEcC-------CCCEEEEEeCCCcEEEEeCCCCeEEeeccCC
Q 046394           15 VEKTWRIKQEAIAREVDILSSRNQYDIMLPELGPY-TLDFTS-------SGRYMAAAGCKGYPYFYNRDGTELHCSKEHG   86 (378)
Q Consensus        15 ~~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~-~~~~sp-------~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~   86 (378)
                      -+..+...+|..+-+|.-.+......+......+. .+-.-|       ....++.++.||.+.|.+..++....+.+|.
T Consensus        25 ~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il~k~~rVE~sv~AH~  104 (737)
T KOG1524|consen   25 NEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVILNKSARVERSISAHA  104 (737)
T ss_pred             cceEEEeccCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEecccchhhhhhhhhh
Confidence            44556666666666655544444444443333332 222111       1246888999999999999998889999999


Q ss_pred             Ce-eEEEE-----EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe-------------ee
Q 046394           87 EV-LKLQF-----LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT-------------ML  147 (378)
Q Consensus        87 ~~-~~l~~-----~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~-------------~~  147 (378)
                      +. .+-.|     -|+++|.||.|++|.- +|-...++.-...+|.|++|.|+++-++.+..+..             ..
T Consensus       105 ~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~n~k~i~Wk  183 (737)
T KOG1524|consen  105 AAISSGRWSPDGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRCARWAPNSNSIVFCQGGHISIKPLAANSKIIRWR  183 (737)
T ss_pred             hhhhhcccCCCCceeeeecCCceEEEEec-cchHHHHHhhcCceeEEEEECCCCCceEEecCCeEEEeecccccceeEEe
Confidence            87 88888     8999999999999984 56555555555678999999999976665555554             67


Q ss_pred             ecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee---cCCceEEEEecCCCccccCCCCCceEEEeeccCCcc
Q 046394          148 CHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL---PGHAKTLDFSRKDSGDFSGSHNYNRYMGYSMVKGYQ  224 (378)
Q Consensus       148 ~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~~sp~g~~~~~~~~~~~~~~~~~~~~~~~  224 (378)
                      .|.+-|.++.|+|..+.+++||.|-..+|||-. |..+.+-   ..+|++++|.|+..+.+|...+..    +..+..+.
T Consensus       184 AHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSva~npd~~~~v~S~nt~R----~~~p~~GS  258 (737)
T KOG1524|consen  184 AHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYAITSVAFNPEKDYLLWSYNTAR----FSSPRVGS  258 (737)
T ss_pred             ccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccCChhccceeeeeeccccceeeeeeeeee----ecCCCccc
Confidence            899999999999999999999999999999975 5555444   478999999999778888755443    22225667


Q ss_pred             eeeeEEcCCCCeEEEecCCCeE
Q 046394          225 IGKVSFRPYEDVLGIGHSMGVS  246 (378)
Q Consensus       225 v~~~~~sp~g~~l~~~~~~g~~  246 (378)
                      |..++|||||..+++|...|.+
T Consensus       259 ifnlsWS~DGTQ~a~gt~~G~v  280 (737)
T KOG1524|consen  259 IFNLSWSADGTQATCGTSTGQL  280 (737)
T ss_pred             eEEEEEcCCCceeeccccCceE
Confidence            9999999999999999999954

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.80  E-value=5.6e-18  Score=145.40  Aligned_cols=197  Identities=17%  Similarity=0.217  Sum_probs=152.4

Q ss_pred             CCceEEEEcCCCCEEEEEeCCCcEEEEeCCCCe---EEeeccCCCe-eEEEE------EEEEEeCCCeEEEEEcCCCcEE
Q 046394           46 LGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTE---LHCSKEHGEV-LKLQF------LLASINKLGQLRYQNVTMGEIV  115 (378)
Q Consensus        46 ~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~-~~l~~------~l~s~~~d~~i~iwd~~~~~~~  115 (378)
                      ++|+++.|+|....|++|+.||.++||.++|+.   ++.+.-..-+ .+..|      .+++++.-..++.||+.+.+..
T Consensus       214 ~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~  293 (514)
T KOG2055|consen  214 GGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVT  293 (514)
T ss_pred             CCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccc
Confidence            789999999999999999999999999987754   3444433334 66667      7888999999999999987754


Q ss_pred             EEEe--cC-CCCeeEEEEcCCCCEEEEEcCCCe-------------eeecCCCEEEEEEecCCCEEEEEECCCeEEEEEc
Q 046394          116 GNFW--TG-LGRTDVIRVNPFNGVVSLGHSGGT-------------MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDL  179 (378)
Q Consensus       116 ~~~~--~~-~~~v~~~~~s~~~~~l~~~~~d~~-------------~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~  179 (378)
                      ..-.  ++ ...+.....+|++++|+..+..|.             ...-.+.|..++|+.+|+.|++++.+|.|.+||+
T Consensus       294 k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl  373 (514)
T KOG2055|consen  294 KLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNL  373 (514)
T ss_pred             cccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEec
Confidence            3222  22 235677889999999999999998             1234578899999999999999999999999999


Q ss_pred             CCceeeeee--cCC--ceEEEEecCCCccccC----------------CCCCceEEEeeccCCcceeeeEEcCCCCeEEE
Q 046394          180 RKYEVLQTL--PGH--AKTLDFSRKDSGDFSG----------------SHNYNRYMGYSMVKGYQIGKVSFRPYEDVLGI  239 (378)
Q Consensus       180 ~~~~~~~~~--~~~--i~~~~~sp~g~~~~~~----------------~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~  239 (378)
                      +...+++.+  .+.  -++++.|++|.+...+                .....|+..+.. -...|+++.|+||+++||.
T Consensus       374 ~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dN-Ltt~Itsl~Fn~d~qiLAi  452 (514)
T KOG2055|consen  374 RQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDN-LTTAITSLQFNHDAQILAI  452 (514)
T ss_pred             CCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhh-hheeeeeeeeCcchhhhhh
Confidence            999999999  343  4778888888863332                223344444433 4567999999999999988


Q ss_pred             ecCC
Q 046394          240 GHSM  243 (378)
Q Consensus       240 ~~~~  243 (378)
                      ++..
T Consensus       453 aS~~  456 (514)
T KOG2055|consen  453 ASRV  456 (514)
T ss_pred             hhhc
Confidence            7753

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.79  E-value=4.5e-18  Score=147.27  Aligned_cols=228  Identities=11%  Similarity=0.118  Sum_probs=164.5

Q ss_pred             EEEeccceeeeeecccceeeEEeecCC--CCceEEEEcCCCCEEEEE--eCCCcEEEEeCCCC---eEE--eeccCCC-e
Q 046394           19 WRIKQEAIAREVDILSSRNQYDIMLPE--LGPYTLDFTSSGRYMAAA--GCKGYPYFYNRDGT---ELH--CSKEHGE-V   88 (378)
Q Consensus        19 ~~~~~~~~i~~~d~~~~~~~~~l~~~~--~~v~~~~~sp~g~~l~~~--~~dg~i~iwd~~~~---~~~--~~~~~~~-~   88 (378)
                      ..++....+++||+......-.+-.|+  .++.+++|+.... |+++  +.|..|++|...|.   ...  ...+... .
T Consensus         6 ~~aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~C   84 (673)
T KOG4378|consen    6 HVASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFC   84 (673)
T ss_pred             eeeccCCceEEeecccccCccccccCCCCCcceeeeccccce-EEEeecCCceeEEEecccCCCCccceeeccccchHHH
Confidence            344556677888887665444443332  3588999987654 4444  45778999986654   111  1222211 1


Q ss_pred             -eEEEE--EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe--------------eeec-C
Q 046394           89 -LKLQF--LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT--------------MLCH-Q  150 (378)
Q Consensus        89 -~~l~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~--------------~~~h-~  150 (378)
                       .+..+  ++++||..+.|+|||++..-+.+.+..|...|+++.++....+||+++..|.              +... .
T Consensus        85 v~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sg  164 (673)
T KOG4378|consen   85 VACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSG  164 (673)
T ss_pred             HhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCC
Confidence             33344  9999999999999999977778888899999999999999999999998887              2222 2


Q ss_pred             CCEEEEEEecCCCE-EEEEECCCeEEEEEcCCceeeeee---c-CCceEEEEecCCCc-----------cccCCCCCceE
Q 046394          151 GPVSALAFHPNGHL-MATSGKDCKIKIWDLRKYEVLQTL---P-GHAKTLDFSRKDSG-----------DFSGSHNYNRY  214 (378)
Q Consensus       151 ~~v~~~~~sp~g~~-l~t~~~d~~i~iwd~~~~~~~~~~---~-~~i~~~~~sp~g~~-----------~~~~~~~~~~~  214 (378)
                      ..|.-+.|+|..++ |.+++.+|.|.+||+....+++.+   | .+...|+|+|....           .+++.......
T Consensus       165 qsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~  244 (673)
T KOG4378|consen  165 QSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQAST  244 (673)
T ss_pred             CeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeeccccccc
Confidence            34568999996655 678999999999999988888777   4 78899999997664           44444433333


Q ss_pred             EEeeccCCcceeeeEEcCCCCeEEEecCCCeEEEE
Q 046394          215 MGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGIL  249 (378)
Q Consensus       215 ~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~  249 (378)
                      ..+.  ...|...|+|+++|.+|++|+..|.+..+
T Consensus       245 ~~l~--y~~Plstvaf~~~G~~L~aG~s~G~~i~Y  277 (673)
T KOG4378|consen  245 DRLT--YSHPLSTVAFSECGTYLCAGNSKGELIAY  277 (673)
T ss_pred             ceee--ecCCcceeeecCCceEEEeecCCceEEEE
Confidence            3332  24578999999999999999999966544

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.79  E-value=6.3e-19  Score=160.01  Aligned_cols=190  Identities=15%  Similarity=0.221  Sum_probs=150.0

Q ss_pred             Eeccceeeeeeccc---ceeeEEeecCCCCceEEEEcCCC-CEEEEEeCCCcEEEEeC-CCCeEEeeccCCCe-eEEEE-
Q 046394           21 IKQEAIAREVDILS---SRNQYDIMLPELGPYTLDFTSSG-RYMAAAGCKGYPYFYNR-DGTELHCSKEHGEV-LKLQF-   93 (378)
Q Consensus        21 ~~~~~~i~~~d~~~---~~~~~~l~~~~~~v~~~~~sp~g-~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~-~~l~~-   93 (378)
                      -...+.|.+||+..   ...+..+..|...+.+++|++.. .+|++||.||.|++||+ ......++.+..+. .++.| 
T Consensus       106 ~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fs  185 (839)
T KOG0269|consen  106 CSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFS  185 (839)
T ss_pred             ecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeec
Confidence            34568899999987   55566788999999999999855 68899999999999994 44445566666654 88888 


Q ss_pred             -----EEEEEeCCCeEEEEEcCCC-cEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe---------------eeecCCC
Q 046394           94 -----LLASINKLGQLRYQNVTMG-EIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT---------------MLCHQGP  152 (378)
Q Consensus        94 -----~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~---------------~~~h~~~  152 (378)
                           .|+++...|.+.+||++.. ++...+..|.++|.|+.|+|++.+||+|+.|+.               ...-..+
T Consensus       186 p~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiap  265 (839)
T KOG0269|consen  186 PGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAP  265 (839)
T ss_pred             cCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecce
Confidence                 9999999999999999864 567788899999999999999999999999998               1122467


Q ss_pred             EEEEEEecCCCE-EEEEE--CCCeEEEEEcCC-ceeeeee--c-CCceEEEEecCCCccccCCCC
Q 046394          153 VSALAFHPNGHL-MATSG--KDCKIKIWDLRK-YEVLQTL--P-GHAKTLDFSRKDSGDFSGSHN  210 (378)
Q Consensus       153 v~~~~~sp~g~~-l~t~~--~d~~i~iwd~~~-~~~~~~~--~-~~i~~~~~sp~g~~~~~~~~~  210 (378)
                      |..+.|-|...+ |++++  .|-.|+|||++. +-+..++  | ..++.++|.......+|+...
T Consensus       266 v~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sK  330 (839)
T KOG0269|consen  266 VGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSK  330 (839)
T ss_pred             eeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecC
Confidence            899999996654 77766  577999999976 4556666  4 567778886644455555433

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.79  E-value=3.8e-18  Score=140.06  Aligned_cols=174  Identities=15%  Similarity=0.200  Sum_probs=146.3

Q ss_pred             eEEeeccCCCe-eEEEE-----EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe------
Q 046394           78 ELHCSKEHGEV-LKLQF-----LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT------  145 (378)
Q Consensus        78 ~~~~~~~~~~~-~~l~~-----~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~------  145 (378)
                      .++.+.+|.+. ..++.     ++.+++.|.+.+||.+++|.|+.++.+|.+.|+++.|++.+.++++++.|+.      
T Consensus       140 lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~  219 (481)
T KOG0300|consen  140 LVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKA  219 (481)
T ss_pred             ehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHH
Confidence            34557788754 66666     8999999999999999999999999999999999999999999999999998      


Q ss_pred             ------------------------------------------------eeecCCCEEEEEEecCCCEEEEEECCCeEEEE
Q 046394          146 ------------------------------------------------MLCHQGPVSALAFHPNGHLMATSGKDCKIKIW  177 (378)
Q Consensus       146 ------------------------------------------------~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iw  177 (378)
                                                                      +.+|.+.|.+..|-..|+.++|++.|.+..+|
T Consensus       220 av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlw  299 (481)
T KOG0300|consen  220 AVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLW  299 (481)
T ss_pred             hhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceee
Confidence                                                            78899999999999999999999999999999


Q ss_pred             EcCCceeeeee--c-CCceE----------EEEecCCCccccCCCC-CceEEEeeccCCcceeeeEEcCCCCeEEEecCC
Q 046394          178 DLRKYEVLQTL--P-GHAKT----------LDFSRKDSGDFSGSHN-YNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSM  243 (378)
Q Consensus       178 d~~~~~~~~~~--~-~~i~~----------~~~sp~g~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~  243 (378)
                      |+.++.+++.+  | ...+.          +.-|.|..+.+|+.+. ...+..+.+ |...|+++.|..+.+        
T Consensus       300 DVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQG-HtdtVTS~vF~~dd~--------  370 (481)
T KOG0300|consen  300 DVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQG-HTDTVTSVVFNTDDR--------  370 (481)
T ss_pred             eeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecc-cccceeEEEEecCCc--------
Confidence            99999999888  2 22222          2334566678898753 345677888 999999999998853        


Q ss_pred             CeEEEEEcCCCCcccccccCCC
Q 046394          244 GVSGILIPGSGEPNFDSWVANP  265 (378)
Q Consensus       244 g~~~~~~~~s~d~~i~~w~~~~  265 (378)
                           +++||.|.++++|+...
T Consensus       371 -----vVSgSDDrTvKvWdLrN  387 (481)
T KOG0300|consen  371 -----VVSGSDDRTVKVWDLRN  387 (481)
T ss_pred             -----eeecCCCceEEEeeecc
Confidence                 56889999999998643

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.78  E-value=1.2e-17  Score=140.91  Aligned_cols=184  Identities=15%  Similarity=0.134  Sum_probs=135.7

Q ss_pred             EeecCCCCceEEEEcC-CCCEEEEEeCCCcEEEEeC-C-------CCeEEeeccCCCe-eEEEE------EEEEEeCCCe
Q 046394           40 DIMLPELGPYTLDFTS-SGRYMAAAGCKGYPYFYNR-D-------GTELHCSKEHGEV-LKLQF------LLASINKLGQ  103 (378)
Q Consensus        40 ~l~~~~~~v~~~~~sp-~g~~l~~~~~dg~i~iwd~-~-------~~~~~~~~~~~~~-~~l~~------~l~s~~~d~~  103 (378)
                      .+.+|.+.|..++|+| +...||+||.|.+|.||.+ .       ..++..|.+|..- ..+.|      .|++++.|.+
T Consensus        76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~  155 (472)
T KOG0303|consen   76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT  155 (472)
T ss_pred             CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence            3568999999999999 4468999999999999994 2       2456778899875 77888      8999999999


Q ss_pred             EEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCeeeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCce
Q 046394          104 LRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGTMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYE  183 (378)
Q Consensus       104 i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~  183 (378)
                      |.+||+.+|..+.++                             .|.+.|.++.|+.+|.+|+|++.|..|+|||.++++
T Consensus       156 v~iWnv~tgeali~l-----------------------------~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~  206 (472)
T KOG0303|consen  156 VSIWNVGTGEALITL-----------------------------DHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGT  206 (472)
T ss_pred             EEEEeccCCceeeec-----------------------------CCCCeEEEEEeccCCceeeeecccceeEEEcCCCCc
Confidence            999999999987765                             477889999999999999999999999999999999


Q ss_pred             eeeee--c--CCceEEEEecCCCc-------------cccCCCCCc-eEEEeeccCCcceeeeEEcCCCCeEEEecCCCe
Q 046394          184 VLQTL--P--GHAKTLDFSRKDSG-------------DFSGSHNYN-RYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGV  245 (378)
Q Consensus       184 ~~~~~--~--~~i~~~~~sp~g~~-------------~~~~~~~~~-~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~  245 (378)
                      .+..-  |  .....+.|-.+|.+             .+|+..... ++.......++.|.---|.||..          
T Consensus       207 ~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~----------  276 (472)
T KOG0303|consen  207 VVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTS----------  276 (472)
T ss_pred             EeeecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCC----------
Confidence            98776  3  45566777666653             445443221 22222221234444444555554          


Q ss_pred             EEEEEcCCCCcccccccC
Q 046394          246 SGILIPGSGEPNFDSWVA  263 (378)
Q Consensus       246 ~~~~~~~s~d~~i~~w~~  263 (378)
                       .+++.|-+|++||.|++
T Consensus       277 -ivYl~GKGD~~IRYyEi  293 (472)
T KOG0303|consen  277 -IVYLCGKGDSSIRYFEI  293 (472)
T ss_pred             -EEEEEecCCcceEEEEe
Confidence             34555666666666654

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.78  E-value=3.4e-17  Score=139.99  Aligned_cols=157  Identities=19%  Similarity=0.268  Sum_probs=124.6

Q ss_pred             CceEEEEcC-------CCCEEEEEeCCCcEEEEeCCC----CeEEe------------------eccCCCe-eEEEE---
Q 046394           47 GPYTLDFTS-------SGRYMAAAGCKGYPYFYNRDG----TELHC------------------SKEHGEV-LKLQF---   93 (378)
Q Consensus        47 ~v~~~~~sp-------~g~~l~~~~~dg~i~iwd~~~----~~~~~------------------~~~~~~~-~~l~~---   93 (378)
                      .+.|++|..       -|+|+|.|+.+..|.|||++=    .+...                  -.+|+.+ .++.|   
T Consensus       175 fPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~  254 (463)
T KOG0270|consen  175 FPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRN  254 (463)
T ss_pred             cchhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccc
Confidence            456777743       257999999999999999421    11111                  1246654 56666   


Q ss_pred             ---EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCC-CEEEEEcCCCe--------------eeecCCCEEE
Q 046394           94 ---LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFN-GVVSLGHSGGT--------------MLCHQGPVSA  155 (378)
Q Consensus        94 ---~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~d~~--------------~~~h~~~v~~  155 (378)
                         .||+||.|.+|.+||+.+|++..++..|...|.++.|+|.. .+|++|+.|+.              .....+.|..
T Consensus       255 ~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEk  334 (463)
T KOG0270|consen  255 FRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEK  334 (463)
T ss_pred             cceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEE
Confidence               99999999999999999999999999999999999999976 68999999988              1123467889


Q ss_pred             EEEecC-CCEEEEEECCCeEEEEEcCC-ceeeeee--c-CCceEEEEecCCCc
Q 046394          156 LAFHPN-GHLMATSGKDCKIKIWDLRK-YEVLQTL--P-GHAKTLDFSRKDSG  203 (378)
Q Consensus       156 ~~~sp~-g~~l~t~~~d~~i~iwd~~~-~~~~~~~--~-~~i~~~~~sp~g~~  203 (378)
                      ++|+|. ...+++++.||+|+-+|+|+ ++++.++  | ++|+++++++.-..
T Consensus       335 v~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~  387 (463)
T KOG0270|consen  335 VAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPG  387 (463)
T ss_pred             EEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCc
Confidence            999994 45678888999999999998 5888888  4 78999999886554

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.77  E-value=8e-17  Score=149.15  Aligned_cols=225  Identities=12%  Similarity=0.081  Sum_probs=172.5

Q ss_pred             ceeeEEEeccceeeeeecccc-eeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeC-CCCeEEeeccCCCe-eEE
Q 046394           15 VEKTWRIKQEAIAREVDILSS-RNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNR-DGTELHCSKEHGEV-LKL   91 (378)
Q Consensus        15 ~~~~~~~~~~~~i~~~d~~~~-~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~-~~l   91 (378)
                      .+..+....++.|++|+...- +....+..+...|.+++..  +.+|++|+.+++|.+|.. ++..-..+.-..-+ .++
T Consensus        25 gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~  102 (933)
T KOG1274|consen   25 GEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDL  102 (933)
T ss_pred             CCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCCCCccceeeeeeccceEE
Confidence            445556666788888887665 5555555566677777654  559999999999999994 33332233333333 777


Q ss_pred             EE-----EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe---------------------
Q 046394           92 QF-----LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT---------------------  145 (378)
Q Consensus        92 ~~-----~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~---------------------  145 (378)
                      +|     ++|.||.|-.|++.++.+......+.+|.++|.++.|+|.+.+||+++-||.                     
T Consensus       103 ~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~  182 (933)
T KOG1274|consen  103 AVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKD  182 (933)
T ss_pred             EEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCcc
Confidence            77     8999999999999999999999999999999999999999999999999998                     


Q ss_pred             eeec-CCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee-----cCCceEEEEecCCCc----------cccCCC
Q 046394          146 MLCH-QGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL-----PGHAKTLDFSRKDSG----------DFSGSH  209 (378)
Q Consensus       146 ~~~h-~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~-----~~~i~~~~~sp~g~~----------~~~~~~  209 (378)
                      ...- ...+..++|+|+|..|+..+.|++|.+|+...+.....+     +..++.++|||+|.|          .+|+..
T Consensus       183 n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~  262 (933)
T KOG1274|consen  183 NEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVD  262 (933)
T ss_pred             ccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecc
Confidence            1111 345677899999888888999999999999999998888     345899999999997          455554


Q ss_pred             CCceEEEeeccCCcceeeeEEcCCCCeEEEecCCCeE
Q 046394          210 NYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVS  246 (378)
Q Consensus       210 ~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~  246 (378)
                      +...   +.  ....|++++|.|++.-+......|..
T Consensus       263 t~~~---~~--~~~~Vc~~aw~p~~n~it~~~~~g~~  294 (933)
T KOG1274|consen  263 THER---HE--FKRAVCCEAWKPNANAITLITALGTL  294 (933)
T ss_pred             cchh---cc--ccceeEEEecCCCCCeeEEEeecccc
Confidence            4111   11  35679999999999877665555543

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.77  E-value=6.6e-17  Score=148.51  Aligned_cols=224  Identities=16%  Similarity=0.188  Sum_probs=163.4

Q ss_pred             ceeeeeecccce-eeEEeecCCCCceEEEEcCC-CCEEEEEeCCCcEEEEeCCCCe---EE----eeccCCCe-eEEEE-
Q 046394           25 AIAREVDILSSR-NQYDIMLPELGPYTLDFTSS-GRYMAAAGCKGYPYFYNRDGTE---LH----CSKEHGEV-LKLQF-   93 (378)
Q Consensus        25 ~~i~~~d~~~~~-~~~~l~~~~~~v~~~~~sp~-g~~l~~~~~dg~i~iwd~~~~~---~~----~~~~~~~~-~~l~~-   93 (378)
                      ..+.+|++.... ....+.. ...|.|++|+|. .+++|.|+.+|+|.+||..+..   ..    ....|..+ +.+.| 
T Consensus       222 ~~~~vW~~~~p~~Pe~~~~~-~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~  300 (555)
T KOG1587|consen  222 GVLLVWSLKNPNTPELVLES-PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWL  300 (555)
T ss_pred             ceEEEEecCCCCCceEEEec-CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEe
Confidence            378899998873 3344444 488999999995 4678888889999999954322   11    12345555 78888 


Q ss_pred             ------EEEEEeCCCeEEEEEcCCCcE-EE-----EEe------cCCCCeeEEEEcCCC-CEEEEEcCCCe---------
Q 046394           94 ------LLASINKLGQLRYQNVTMGEI-VG-----NFW------TGLGRTDVIRVNPFN-GVVSLGHSGGT---------  145 (378)
Q Consensus        94 ------~l~s~~~d~~i~iwd~~~~~~-~~-----~~~------~~~~~v~~~~~s~~~-~~l~~~~~d~~---------  145 (378)
                            -|++++.||.|..|+++.-.. +.     ...      .....++++.|.+.. ..|++|+..|.         
T Consensus       301 ~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~  380 (555)
T KOG1587|consen  301 QNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGY  380 (555)
T ss_pred             ccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCC
Confidence                  499999999999998865322 11     111      123467889999865 67888888887         


Q ss_pred             -------------eeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcC-Cceeeeee---cCCceEEEEec---------
Q 046394          146 -------------MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLR-KYEVLQTL---PGHAKTLDFSR---------  199 (378)
Q Consensus       146 -------------~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~-~~~~~~~~---~~~i~~~~~sp---------  199 (378)
                                   +..|.++|+++.++|=+..+...+.|.+|+||... ...++..+   ...+++++|||         
T Consensus       381 ~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~  460 (555)
T KOG1587|consen  381 TPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATV  460 (555)
T ss_pred             cccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEE
Confidence                         44578899999999965554444449999999987 66666666   35689999999         


Q ss_pred             --CCCccccCCC--CCceEEEeeccCCcceeeeEEcCCCCeEEEecCCCeEEEEE
Q 046394          200 --KDSGDFSGSH--NYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILI  250 (378)
Q Consensus       200 --~g~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~  250 (378)
                        +|...+|+..  ...++..... +....+.+.|++.|+.|++|+..|.+.++.
T Consensus       461 d~~G~l~iWDLl~~~~~Pv~s~~~-~~~~l~~~~~s~~g~~lavGd~~G~~~~~~  514 (555)
T KOG1587|consen  461 DGDGNLDIWDLLQDDEEPVLSQKV-CSPALTRVRWSPNGKLLAVGDANGTTHILK  514 (555)
T ss_pred             cCCCceehhhhhccccCCcccccc-cccccceeecCCCCcEEEEecCCCcEEEEE
Confidence              5677899863  4456666655 567788899999999999999999666554

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.77  E-value=2.7e-17  Score=141.14  Aligned_cols=227  Identities=15%  Similarity=0.130  Sum_probs=163.0

Q ss_pred             cceeeeeecccc----eeeEEeecCCCCceEEEEcCCC-CEEEEEeCCCcEEEEeCCCCeEEeeccC---CCe-eEEEE-
Q 046394           24 EAIAREVDILSS----RNQYDIMLPELGPYTLDFTSSG-RYMAAAGCKGYPYFYNRDGTELHCSKEH---GEV-LKLQF-   93 (378)
Q Consensus        24 ~~~i~~~d~~~~----~~~~~l~~~~~~v~~~~~sp~g-~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~-~~l~~-   93 (378)
                      .|.|-+||+.+.    ..+.-+..|...|.+|.|+|.. ..+++.|.||+|++-|+.+.....+...   ... .++.| 
T Consensus       209 ~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~  288 (498)
T KOG4328|consen  209 GGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFS  288 (498)
T ss_pred             CCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeecccc
Confidence            577888888533    3456678899999999999955 6899999999999999776544333222   122 55666 


Q ss_pred             ----EEEEEeCCCeEEEEEcCCCcE-EEEEecCCCCeeEEEEcCCC-CEEEEEcCCCe------------------eeec
Q 046394           94 ----LLASINKLGQLRYQNVTMGEI-VGNFWTGLGRTDVIRVNPFN-GVVSLGHSGGT------------------MLCH  149 (378)
Q Consensus        94 ----~l~s~~~d~~i~iwd~~~~~~-~~~~~~~~~~v~~~~~s~~~-~~l~~~~~d~~------------------~~~h  149 (378)
                          .++.+..=|...+||.+++.. ...+..|...|..++++|.. .+|++++.|++                  ...|
T Consensus       289 ~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~H  368 (498)
T KOG4328|consen  289 AESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPH  368 (498)
T ss_pred             CCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccc
Confidence                566666667899999998654 66666788899999999987 57899999988                  4568


Q ss_pred             CCCEEEEEEecCCCEEEEEECCCeEEEEEcC----Cceeeeee-c-------CCceEEEEecCCCc----------cccC
Q 046394          150 QGPVSALAFHPNGHLMATSGKDCKIKIWDLR----KYEVLQTL-P-------GHAKTLDFSRKDSG----------DFSG  207 (378)
Q Consensus       150 ~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~----~~~~~~~~-~-------~~i~~~~~sp~g~~----------~~~~  207 (378)
                      ...|.+..|||.|-.|+|.+.|..|+|||..    ...++.++ |       -..-...|.|+..+          ++++
T Consensus       369 rrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~  448 (498)
T KOG4328|consen  369 RRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFD  448 (498)
T ss_pred             cceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEc
Confidence            8899999999977779999999999999983    34444555 2       12344678887653          6677


Q ss_pred             CCCCceEEEeeccCCcceee-eEEcCCCCeEEEec-CCCeEEEEE
Q 046394          208 SHNYNRYMGYSMVKGYQIGK-VSFRPYEDVLGIGH-SMGVSGILI  250 (378)
Q Consensus       208 ~~~~~~~~~~~~~~~~~v~~-~~~sp~g~~l~~~~-~~g~~~~~~  250 (378)
                      ...++.+..+..+....|.+ ..|+|-+..+++|+ ..|.+.+|.
T Consensus       449 ~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft  493 (498)
T KOG4328|consen  449 GNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFT  493 (498)
T ss_pred             CCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEe
Confidence            76666565543323334444 47999998555554 456555443

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.76  E-value=4.1e-17  Score=141.43  Aligned_cols=183  Identities=13%  Similarity=0.087  Sum_probs=136.5

Q ss_pred             EEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCC-CCeEEeeccCCC-e-eEEEE--
Q 046394           19 WRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRD-GTELHCSKEHGE-V-LKLQF--   93 (378)
Q Consensus        19 ~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~-~-~~l~~--   93 (378)
                      +.+.+.+.|++||+........+..|...|+++.+.....|||+++..|.|.|.... +.....|....+ . .-+.|  
T Consensus        95 ~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~  174 (673)
T KOG4378|consen   95 ISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSP  174 (673)
T ss_pred             eccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeeccc
Confidence            344567899999999877888899999999999999999999999999999999954 444444544433 2 46666  


Q ss_pred             ----EEEEEeCCCeEEEEEcCCCcEEEEEe-cCCCCeeEEEEcCCCC-EEEEEcCCCe-------------eeecCCCEE
Q 046394           94 ----LLASINKLGQLRYQNVTMGEIVGNFW-TGLGRTDVIRVNPFNG-VVSLGHSGGT-------------MLCHQGPVS  154 (378)
Q Consensus        94 ----~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s~~~~-~l~~~~~d~~-------------~~~h~~~v~  154 (378)
                          +|.+++.+|.|.+||+....++..+. .|..+...|+|+|.+. +|++.+.|..             ......+..
T Consensus       175 skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Pls  254 (673)
T KOG4378|consen  175 SKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHPLS  254 (673)
T ss_pred             ccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeecCCcc
Confidence                89999999999999997766665543 4777788888888764 5566666655             223345677


Q ss_pred             EEEEecCCCEEEEEECCCeEEEEEcCCc-eeeeee---cCCceEEEEecCC
Q 046394          155 ALAFHPNGHLMATSGKDCKIKIWDLRKY-EVLQTL---PGHAKTLDFSRKD  201 (378)
Q Consensus       155 ~~~~sp~g~~l~t~~~d~~i~iwd~~~~-~~~~~~---~~~i~~~~~sp~g  201 (378)
                      +++|+++|.+|+.|+..|.|..||++.. .++..+   ...|++++|-|..
T Consensus       255 tvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~  305 (673)
T KOG4378|consen  255 TVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP  305 (673)
T ss_pred             eeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence            7888888888888888888888888763 334444   3557777776543

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.75  E-value=3e-16  Score=141.19  Aligned_cols=238  Identities=10%  Similarity=0.044  Sum_probs=173.7

Q ss_pred             CceeeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCC---EEEEEeCCCcEEEEeCCCC---eEEeeccCCC
Q 046394           14 GVEKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGR---YMAAAGCKGYPYFYNRDGT---ELHCSKEHGE   87 (378)
Q Consensus        14 ~~~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~---~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~   87 (378)
                      +....+.+.....|.+||..+......+.+|...|+|+.|-|+..   ++++|+.||.|.+|.+...   .+..+.+|..
T Consensus        23 ~~~~~vafGa~~~Iav~dp~k~~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~~  102 (764)
T KOG1063|consen   23 GPGGLVAFGAGPAIAVADPEKILIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHCK  102 (764)
T ss_pred             cccceEEecCCceEEEeCcccceeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecCcce
Confidence            334556677778899999998888899999999999999999887   8999999999999996532   2344555443


Q ss_pred             eeEEEE----EEEE-EeCCCeEEEEEcCCCc-------------------------------------------------
Q 046394           88 VLKLQF----LLAS-INKLGQLRYQNVTMGE-------------------------------------------------  113 (378)
Q Consensus        88 ~~~l~~----~l~s-~~~d~~i~iwd~~~~~-------------------------------------------------  113 (378)
                       .++++    .+.+ ...|+++++||.+..+                                                 
T Consensus       103 -~~~cv~a~~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f  181 (764)
T KOG1063|consen  103 -ECVCVVARSSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSF  181 (764)
T ss_pred             -eEEEEEeeeeEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcce
Confidence             33333    2222 2577888888873222                                                 


Q ss_pred             -EEEEEecCCCCeeEEEEcCCCC---EEEEEcCCCe--------------------------------------------
Q 046394          114 -IVGNFWTGLGRTDVIRVNPFNG---VVSLGHSGGT--------------------------------------------  145 (378)
Q Consensus       114 -~~~~~~~~~~~v~~~~~s~~~~---~l~~~~~d~~--------------------------------------------  145 (378)
                       .+..+.+|.+.|.+++|...+.   +|++++.|..                                            
T Consensus       182 ~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~ea  261 (764)
T KOG1063|consen  182 ARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEA  261 (764)
T ss_pred             eEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhh
Confidence             2333556777788888887554   6777777776                                            


Q ss_pred             -eeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCcee--eeee------c--CCceEEEEecCCCc----------c
Q 046394          146 -MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEV--LQTL------P--GHAKTLDFSRKDSG----------D  204 (378)
Q Consensus       146 -~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~--~~~~------~--~~i~~~~~sp~g~~----------~  204 (378)
                       +.||.+.|.++.|+|.+..|+++|.|.++.+|...+..-  +..+      +  .......|+|++..          .
T Consensus       262 ll~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~h  341 (764)
T KOG1063|consen  262 LLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFH  341 (764)
T ss_pred             hhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEE
Confidence             559999999999999999999999999999997665322  2222      1  23567778887753          5


Q ss_pred             ccCCCC---CceEEEeeccCCcceeeeEEcCCCCeEEEecCCCeEEEEEcCC
Q 046394          205 FSGSHN---YNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILIPGS  253 (378)
Q Consensus       205 ~~~~~~---~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~~~s  253 (378)
                      +|...+   ..+.....+ |...|.+++|+|.|.+|.+.+.|-+.++|...+
T Consensus       342 lWkt~d~~~w~~~~~iSG-H~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg  392 (764)
T KOG1063|consen  342 LWKTKDKTFWTQEPVISG-HVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWG  392 (764)
T ss_pred             EEeccCccceeecccccc-ccccceeeeecCCCCEEEEeccccceeeecccc
Confidence            555222   123334556 888999999999999999999999888887763

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.75  E-value=1.6e-16  Score=130.48  Aligned_cols=195  Identities=14%  Similarity=0.125  Sum_probs=145.8

Q ss_pred             ceEEEEcCCCCEEEEEeCCCcEEEEeCCC-CeEEeeccCCCe-eEEEE-----EEEEEeCCCeEEEEEcCCCcEEEEEec
Q 046394           48 PYTLDFTSSGRYMAAAGCKGYPYFYNRDG-TELHCSKEHGEV-LKLQF-----LLASINKLGQLRYQNVTMGEIVGNFWT  120 (378)
Q Consensus        48 v~~~~~sp~g~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~-~~l~~-----~l~s~~~d~~i~iwd~~~~~~~~~~~~  120 (378)
                      ..|+.|++.|.+||+|+.||.|.|||+.. ..-..+.+|..+ ++++|     .|+|++.|..|.+||+..|.++..+. 
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir-  104 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR-  104 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE-
Confidence            77999999999999999999999999544 455678899887 99999     99999999999999999999988886 


Q ss_pred             CCCCeeEEEEcCCCCEEEEEcC--CCe------------ee----e-cCCCEEEEEEecCCCEEEEEECCCeEEEEEcCC
Q 046394          121 GLGRTDVIRVNPFNGVVSLGHS--GGT------------ML----C-HQGPVSALAFHPNGHLMATSGKDCKIKIWDLRK  181 (378)
Q Consensus       121 ~~~~v~~~~~s~~~~~l~~~~~--d~~------------~~----~-h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~  181 (378)
                      ...+|+.+.|+|...-.++++.  ...            +.    + .+....+..|.+.|+++++|...|.+.++|..+
T Consensus       105 f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t  184 (405)
T KOG1273|consen  105 FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAET  184 (405)
T ss_pred             ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecch
Confidence            4688999999996543222221  111            00    0 011112335888999999999999999999999


Q ss_pred             ceeeeee---c-CCceEEEEecCCCccccCCCCCceEEEeecc---------------------CCcceeeeEEcCCCCe
Q 046394          182 YEVLQTL---P-GHAKTLDFSRKDSGDFSGSHNYNRYMGYSMV---------------------KGYQIGKVSFRPYEDV  236 (378)
Q Consensus       182 ~~~~~~~---~-~~i~~~~~sp~g~~~~~~~~~~~~~~~~~~~---------------------~~~~v~~~~~sp~g~~  236 (378)
                      .+++..+   . ..|..+.++..|.+.+.+..+. .+.++...                     ...+=.+++||.+|.|
T Consensus       185 ~e~vas~rits~~~IK~I~~s~~g~~liiNtsDR-vIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeY  263 (405)
T KOG1273|consen  185 LECVASFRITSVQAIKQIIVSRKGRFLIINTSDR-VIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEY  263 (405)
T ss_pred             heeeeeeeechheeeeEEEEeccCcEEEEecCCc-eEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccE
Confidence            9998888   3 6789999999999766654332 22222110                     0112257889999999


Q ss_pred             EEEecCCC
Q 046394          237 LGIGHSMG  244 (378)
Q Consensus       237 l~~~~~~g  244 (378)
                      +++|+...
T Consensus       264 v~a~s~~a  271 (405)
T KOG1273|consen  264 VCAGSARA  271 (405)
T ss_pred             EEeccccc
Confidence            98887543

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.75  E-value=3.9e-17  Score=140.18  Aligned_cols=196  Identities=17%  Similarity=0.171  Sum_probs=147.5

Q ss_pred             eecccceeeEEeecCCCCceEEEEcCCC--CEEEEEeCCCcEEEEeCCC-----CeEEeeccCCCe-eEEEE------EE
Q 046394           30 VDILSSRNQYDIMLPELGPYTLDFTSSG--RYMAAAGCKGYPYFYNRDG-----TELHCSKEHGEV-LKLQF------LL   95 (378)
Q Consensus        30 ~d~~~~~~~~~l~~~~~~v~~~~~sp~g--~~l~~~~~dg~i~iwd~~~-----~~~~~~~~~~~~-~~l~~------~l   95 (378)
                      +|+.+.........+...|++++|+|..  +.+|+|...|+|-+||+.+     ..+..+..|.++ +++.|      .+
T Consensus       171 l~l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i  250 (498)
T KOG4328|consen  171 LDLDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQI  250 (498)
T ss_pred             cccccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhhe
Confidence            4555555666677888999999999966  4788999999999999742     234556778776 99999      89


Q ss_pred             EEEeCCCeEEEEEcCCCcE--EEEEecCCCCeeEEEEcCCCCEEEEEcCCCe---------------eeecCCCEEEEEE
Q 046394           96 ASINKLGQLRYQNVTMGEI--VGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT---------------MLCHQGPVSALAF  158 (378)
Q Consensus        96 ~s~~~d~~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~---------------~~~h~~~v~~~~~  158 (378)
                      ++.+.||+|++-|++.+..  +.........+..+.|+.+...++.+..-|.               +.-|...|++|++
T Consensus       251 ~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~  330 (498)
T KOG4328|consen  251 YSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVAL  330 (498)
T ss_pred             eeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeec
Confidence            9999999999999987653  3333334556778889988877777766663               5567789999999


Q ss_pred             ec-CCCEEEEEECCCeEEEEEcCCceeeeeecCCceEEEEecCCCccccCCCCCceEEEeeccCCcceeeeEEcCCCCeE
Q 046394          159 HP-NGHLMATSGKDCKIKIWDLRKYEVLQTLPGHAKTLDFSRKDSGDFSGSHNYNRYMGYSMVKGYQIGKVSFRPYEDVL  237 (378)
Q Consensus       159 sp-~g~~l~t~~~d~~i~iwd~~~~~~~~~~~~~i~~~~~sp~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l  237 (378)
                      +| ...+|+|+|.|++++|||++....                         ...++.... +|...|.++.|||+|-.|
T Consensus       331 NP~~p~~laT~s~D~T~kIWD~R~l~~-------------------------K~sp~lst~-~HrrsV~sAyFSPs~gtl  384 (498)
T KOG4328|consen  331 NPVCPWFLATASLDQTAKIWDLRQLRG-------------------------KASPFLSTL-PHRRSVNSAYFSPSGGTL  384 (498)
T ss_pred             CCCCchheeecccCcceeeeehhhhcC-------------------------CCCcceecc-cccceeeeeEEcCCCCce
Confidence            99 556799999999999999987331                         111222222 378889999999998767


Q ss_pred             EEecCCCeEEEEEc
Q 046394          238 GIGHSMGVSGILIP  251 (378)
Q Consensus       238 ~~~~~~g~~~~~~~  251 (378)
                      ++.+.|..+++|.+
T Consensus       385 ~TT~~D~~IRv~ds  398 (498)
T KOG4328|consen  385 LTTCQDNEIRVFDS  398 (498)
T ss_pred             EeeccCCceEEeec
Confidence            77777776666654

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.75  E-value=6e-18  Score=160.06  Aligned_cols=198  Identities=19%  Similarity=0.194  Sum_probs=151.0

Q ss_pred             ccceeeeeecccc------eeeEEeecCCCCceEEEEcCCCC-EEEEEeCCCcEEEEeCCCCe-EEee---ccCCCeeEE
Q 046394           23 QEAIAREVDILSS------RNQYDIMLPELGPYTLDFTSSGR-YMAAAGCKGYPYFYNRDGTE-LHCS---KEHGEVLKL   91 (378)
Q Consensus        23 ~~~~i~~~d~~~~------~~~~~l~~~~~~v~~~~~sp~g~-~l~~~~~dg~i~iwd~~~~~-~~~~---~~~~~~~~l   91 (378)
                      .||.|.+||...-      ..+.+...|.+.|..+.|++... +||+|+.||.|.|||+..-. -..+   .-...+.++
T Consensus        88 edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~l  167 (1049)
T KOG0307|consen   88 EDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCL  167 (1049)
T ss_pred             cCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEe
Confidence            3677777777652      33556778999999999999765 99999999999999964321 1122   122345899


Q ss_pred             EE------EEEEEeCCCeEEEEEcCCCcEEEEEecCCC--CeeEEEEcCCC-CEEEEEcCCCe-----------------
Q 046394           92 QF------LLASINKLGQLRYQNVTMGEIVGNFWTGLG--RTDVIRVNPFN-GVVSLGHSGGT-----------------  145 (378)
Q Consensus        92 ~~------~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~--~v~~~~~s~~~-~~l~~~~~d~~-----------------  145 (378)
                      +|      +|++++.+|.+.|||++..+++-.+..+.+  .++.+.|+|++ +.++++++|..                 
T Consensus       168 sWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k  247 (1049)
T KOG0307|consen  168 SWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLK  247 (1049)
T ss_pred             ccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchh
Confidence            99      899999999999999998888777766543  47789999988 46777776665                 


Q ss_pred             -eeecCCCEEEEEEecCC-CEEEEEECCCeEEEEEcCCceeeeeecCCceEEEEecCCCccccCCCCCceEEEeeccCCc
Q 046394          146 -MLCHQGPVSALAFHPNG-HLMATSGKDCKIKIWDLRKYEVLQTLPGHAKTLDFSRKDSGDFSGSHNYNRYMGYSMVKGY  223 (378)
Q Consensus       146 -~~~h~~~v~~~~~sp~g-~~l~t~~~d~~i~iwd~~~~~~~~~~~~~i~~~~~sp~g~~~~~~~~~~~~~~~~~~~~~~  223 (378)
                       +.+|...|.+|.|++.+ ++|+|++.|+.|.+|+..+++.+..+                             .. .++
T Consensus       248 ~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~-----------------------------p~-~~n  297 (1049)
T KOG0307|consen  248 ILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGEL-----------------------------PA-QGN  297 (1049)
T ss_pred             hhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeec-----------------------------CC-CCc
Confidence             57899999999999955 88999999999999999887765543                             22 345


Q ss_pred             ceeeeEEcCCCC-eEEEecCCCeEEEEE
Q 046394          224 QIGKVSFRPYED-VLGIGHSMGVSGILI  250 (378)
Q Consensus       224 ~v~~~~~sp~g~-~l~~~~~~g~~~~~~  250 (378)
                      .+..+.|+|... .+++++-+|.+.++-
T Consensus       298 W~fdv~w~pr~P~~~A~asfdgkI~I~s  325 (1049)
T KOG0307|consen  298 WCFDVQWCPRNPSVMAAASFDGKISIYS  325 (1049)
T ss_pred             ceeeeeecCCCcchhhhheeccceeeee
Confidence            677888888775 666667777666553

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.75  E-value=6.7e-16  Score=127.24  Aligned_cols=206  Identities=13%  Similarity=0.163  Sum_probs=147.7

Q ss_pred             CceEEEEcCCCCEEEEEeCCCcEEEEeCCC--------C-----eEEeeccCCC--eeEEEE------------EEEEEe
Q 046394           47 GPYTLDFTSSGRYMAAAGCKGYPYFYNRDG--------T-----ELHCSKEHGE--VLKLQF------------LLASIN   99 (378)
Q Consensus        47 ~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~--------~-----~~~~~~~~~~--~~~l~~------------~l~s~~   99 (378)
                      -..++.|||||..|++-+.|..+.+|++..        .     ....++-..+  +...+|            ++++.+
T Consensus        51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ss  130 (406)
T KOG2919|consen   51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSS  130 (406)
T ss_pred             hhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecc
Confidence            455889999999999999999999999421        0     1111222222  244555            889999


Q ss_pred             CCCeEEEEEcCCCcEEEEEecCC-----CCeeEEEEcCCCCEEEEEcCCCe----------------e-----eecCCCE
Q 046394          100 KLGQLRYQNVTMGEIVGNFWTGL-----GRTDVIRVNPFNGVVSLGHSGGT----------------M-----LCHQGPV  153 (378)
Q Consensus       100 ~d~~i~iwd~~~~~~~~~~~~~~-----~~v~~~~~s~~~~~l~~~~~d~~----------------~-----~~h~~~v  153 (378)
                      .+.-|++||.-+|+...++....     ....+++|+|||..|++|...-.                .     .+..+.|
T Consensus       131 r~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~gii  210 (406)
T KOG2919|consen  131 RDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGII  210 (406)
T ss_pred             ccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhccccccccee
Confidence            99999999999999888776532     24568999999999998876554                1     2336778


Q ss_pred             EEEEEec-CCCEEEEEECCCeEEEEEcCCceeeeee---cCCceEEEEecCCCccccCCCCCceEEEeecc---------
Q 046394          154 SALAFHP-NGHLMATSGKDCKIKIWDLRKYEVLQTL---PGHAKTLDFSRKDSGDFSGSHNYNRYMGYSMV---------  220 (378)
Q Consensus       154 ~~~~~sp-~g~~l~t~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~~sp~g~~~~~~~~~~~~~~~~~~~---------  220 (378)
                      .+++|+| +...++.++....+-||.-..+.++..+   .+.|+.+.|.++|...+...+....+..|...         
T Consensus       211 sc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L  290 (406)
T KOG2919|consen  211 SCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYAL  290 (406)
T ss_pred             eeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhh
Confidence            9999999 5568999999999999998888998888   48899999999998755544443333333220         


Q ss_pred             --CCc-cee--eeEEcCCCCeEEEecCCCeEEEEEcC
Q 046394          221 --KGY-QIG--KVSFRPYEDVLGIGHSMGVSGILIPG  252 (378)
Q Consensus       221 --~~~-~v~--~~~~sp~g~~l~~~~~~g~~~~~~~~  252 (378)
                        |.. .-.  -....|+|++||+|+.+|.+++|..-
T Consensus       291 ~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk  327 (406)
T KOG2919|consen  291 ERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLK  327 (406)
T ss_pred             hhhccCccceEEEecCCCCceeeccCCCccEEEEecC
Confidence              111 112  24556888888888777777666543

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.73  E-value=1.6e-16  Score=130.12  Aligned_cols=214  Identities=14%  Similarity=0.129  Sum_probs=167.7

Q ss_pred             eeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCCCe----EEeeccCCCeeEEEE-----EEEEEeCCCeEEEE
Q 046394           37 NQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTE----LHCSKEHGEVLKLQF-----LLASINKLGQLRYQ  107 (378)
Q Consensus        37 ~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~~l~~-----~l~s~~~d~~i~iw  107 (378)
                      .+.+|..|...|+++.|+|....|++|+.|++|+++|.....    ...+.....+.++.|     +++.|..-.++++|
T Consensus       164 vIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlY  243 (430)
T KOG0640|consen  164 VIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLY  243 (430)
T ss_pred             eEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEE
Confidence            467788899999999999999999999999999999964322    233444444588888     88888888899999


Q ss_pred             EcCCCcEEEEEe---cCCCCeeEEEEcCCCCEEEEEcCCCe---------------eeecC-CCEEEEEEecCCCEEEEE
Q 046394          108 NVTMGEIVGNFW---TGLGRTDVIRVNPFNGVVSLGHSGGT---------------MLCHQ-GPVSALAFHPNGHLMATS  168 (378)
Q Consensus       108 d~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~~d~~---------------~~~h~-~~v~~~~~sp~g~~l~t~  168 (378)
                      |+.+.++.....   .|.+.|+++.+++.+++.++++.||.               -..|. ..|.+..|..+|+|+++.
T Consensus       244 dv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsS  323 (430)
T KOG0640|consen  244 DVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSS  323 (430)
T ss_pred             eccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeec
Confidence            999998866543   36789999999999999999999998               22354 468899999999999999


Q ss_pred             ECCCeEEEEEcCCceeeeee-cC-------CceEE--------EEecCCC---ccccCCCCCceEEEeeccCCcceeeeE
Q 046394          169 GKDCKIKIWDLRKYEVLQTL-PG-------HAKTL--------DFSRKDS---GDFSGSHNYNRYMGYSMVKGYQIGKVS  229 (378)
Q Consensus       169 ~~d~~i~iwd~~~~~~~~~~-~~-------~i~~~--------~~sp~g~---~~~~~~~~~~~~~~~~~~~~~~v~~~~  229 (378)
                      |.|..+++|.+.+++++..+ ..       .-+..        .+.||..   ...|+.++......+...|.+++..+.
T Consensus       324 G~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~  403 (430)
T KOG0640|consen  324 GKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIV  403 (430)
T ss_pred             CCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEE
Confidence            99999999999999999988 21       11233        3344433   356777777666666655999999999


Q ss_pred             EcCCCCeEEEecCCCeEEEEE
Q 046394          230 FRPYEDVLGIGHSMGVSGILI  250 (378)
Q Consensus       230 ~sp~g~~l~~~~~~g~~~~~~  250 (378)
                      -||.+..+++|++|-..++|.
T Consensus       404 HSP~~p~FmTcsdD~raRFWy  424 (430)
T KOG0640|consen  404 HSPVEPAFMTCSDDFRARFWY  424 (430)
T ss_pred             eCCCCCceeeecccceeeeee
Confidence            999997666666665555443

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.73  E-value=1.4e-16  Score=142.74  Aligned_cols=232  Identities=11%  Similarity=0.111  Sum_probs=172.8

Q ss_pred             eecCCceeeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEeeccCCCe-
Q 046394           10 LEAEGVEKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTELHCSKEHGEV-   88 (378)
Q Consensus        10 l~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-   88 (378)
                      +.++|.+-  .+-.+..+.+||...|....++++|...|+|++|+.||..+|+|+.|..|.+|+..-+-+..+ .|.++ 
T Consensus        20 fkPDGsqL--~lAAg~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkY-SH~D~I   96 (1081)
T KOG1538|consen   20 FKPDGTQL--ILAAGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKY-SHNDAI   96 (1081)
T ss_pred             ECCCCceE--EEecCCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceeee-ccCCee
Confidence            45555443  334567889999999999999999999999999999999999999999999999543333333 46665 


Q ss_pred             eEEEE-----EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe----------------ee
Q 046394           89 LKLQF-----LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT----------------ML  147 (378)
Q Consensus        89 ~~l~~-----~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~----------------~~  147 (378)
                      .|+.|     .+++|+-+ ..-+|....... ... .....+.+++|+.||++++.|..+|+                -.
T Consensus        97 QCMsFNP~~h~LasCsLs-dFglWS~~qK~V-~K~-kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~Rpg  173 (1081)
T KOG1538|consen   97 QCMSFNPITHQLASCSLS-DFGLWSPEQKSV-SKH-KSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIERPG  173 (1081)
T ss_pred             eEeecCchHHHhhhcchh-hccccChhhhhH-Hhh-hhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcceEEeCCC
Confidence            99999     78887754 356787654332 222 12467889999999999999999998                23


Q ss_pred             ecCCCEEEEEEecCC-----CEEEEEECCCeEEEEEcCCceeeee---ecCCceEEEEecCCCccccCCCCCce------
Q 046394          148 CHQGPVSALAFHPNG-----HLMATSGKDCKIKIWDLRKYEVLQT---LPGHAKTLDFSRKDSGDFSGSHNYNR------  213 (378)
Q Consensus       148 ~h~~~v~~~~~sp~g-----~~l~t~~~d~~i~iwd~~~~~~~~~---~~~~i~~~~~sp~g~~~~~~~~~~~~------  213 (378)
                      +.+.+|.+++|+|..     ..++......++..|.+. |+.+..   +.-...|+++.|+|.+.+.+..+...      
T Consensus       174 g~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~  252 (1081)
T KOG1538|consen  174 GSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTRD  252 (1081)
T ss_pred             CCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccccCCCCchhheeccCCcEEEEccCCCceEEEeec
Confidence            467899999999942     457777777888888764 454432   25667899999999986665444332      


Q ss_pred             ---EEEeeccCCcceeeeEEcCCCCeEEEecCCCeEEEE
Q 046394          214 ---YMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGIL  249 (378)
Q Consensus       214 ---~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~  249 (378)
                         +.+... ....|+.|+..|++++++.|..||++.-+
T Consensus       253 GvrLGTvg~-~D~WIWtV~~~PNsQ~v~~GCqDGTiACy  290 (1081)
T KOG1538|consen  253 GVRLGTVGE-QDSWIWTVQAKPNSQYVVVGCQDGTIACY  290 (1081)
T ss_pred             CeEEeeccc-cceeEEEEEEccCCceEEEEEccCeeehh
Confidence               222222 45689999999999999999999976533

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.73  E-value=6.1e-16  Score=128.35  Aligned_cols=233  Identities=12%  Similarity=0.046  Sum_probs=164.1

Q ss_pred             EEEeccceeeeeecccceeeEEeecCCCCceEEEEcC--CCCEEEEEeCCCcEEEEeC-CCC--eEEeeccCCC-e-eEE
Q 046394           19 WRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTS--SGRYMAAAGCKGYPYFYNR-DGT--ELHCSKEHGE-V-LKL   91 (378)
Q Consensus        19 ~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp--~g~~l~~~~~dg~i~iwd~-~~~--~~~~~~~~~~-~-~~l   91 (378)
                      ...-..+.+++||..+++.+..++++...+..+.|..  ....+.+|+.||+|++||. ...  ....+..+.+ + .++
T Consensus        44 av~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~l  123 (376)
T KOG1188|consen   44 AVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICL  123 (376)
T ss_pred             EEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEe
Confidence            3345579999999999999999999999999999977  3568999999999999993 222  2334455553 2 555


Q ss_pred             EE-----EEEEEe----CCCeEEEEEcCCCcE-EEE-EecCCCCeeEEEEcCCC-CEEEEEcCCCe--------------
Q 046394           92 QF-----LLASIN----KLGQLRYQNVTMGEI-VGN-FWTGLGRTDVIRVNPFN-GVVSLGHSGGT--------------  145 (378)
Q Consensus        92 ~~-----~l~s~~----~d~~i~iwd~~~~~~-~~~-~~~~~~~v~~~~~s~~~-~~l~~~~~d~~--------------  145 (378)
                      +-     ++++|.    .+-.|.+||++..+. +.. ...|.+.|++++|+|.. +.|++|+.||.              
T Consensus       124 d~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDa  203 (376)
T KOG1188|consen  124 DLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDA  203 (376)
T ss_pred             eccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhh
Confidence            44     555553    367799999998765 444 34688999999999976 79999999998              


Q ss_pred             ---eeecCCCEEEEEEecCC-CEEEEEECCCeEEEEEcCCceeeeeec-C-------------------------CceEE
Q 046394          146 ---MLCHQGPVSALAFHPNG-HLMATSGKDCKIKIWDLRKYEVLQTLP-G-------------------------HAKTL  195 (378)
Q Consensus       146 ---~~~h~~~v~~~~~sp~g-~~l~t~~~d~~i~iwd~~~~~~~~~~~-~-------------------------~i~~~  195 (378)
                         ...|...|.++.|+.++ +.|.+.+...+..+|++..+.+...+. .                         ....+
T Consensus       204 L~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l  283 (376)
T KOG1188|consen  204 LLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCAL  283 (376)
T ss_pred             HHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEE
Confidence               34566779999999877 347888889999999998877544431 0                         00111


Q ss_pred             EEecCCC--c----cccCCCCCceEEEeeccCCcceeeeEEcCCCCeEEEecCCCeEEEEEc
Q 046394          196 DFSRKDS--G----DFSGSHNYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILIP  251 (378)
Q Consensus       196 ~~sp~g~--~----~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~~  251 (378)
                      +....+.  +    +.........+..+.+.|..-|.++.|...+.+|.+|+.||.+.+|..
T Consensus       284 ~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~  345 (376)
T KOG1188|consen  284 AGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV  345 (376)
T ss_pred             eccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence            1111111  1    111122233334444446677889999988888888888888887774

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.72  E-value=8.4e-17  Score=132.26  Aligned_cols=167  Identities=17%  Similarity=0.135  Sum_probs=124.8

Q ss_pred             EeeccCCCe-eEEEE-----EEEEEeCCCeEEEEEcCCCcE-----EEEEecCCCCeeEEEEcCCCCEEEEEcCCCe---
Q 046394           80 HCSKEHGEV-LKLQF-----LLASINKLGQLRYQNVTMGEI-----VGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT---  145 (378)
Q Consensus        80 ~~~~~~~~~-~~l~~-----~l~s~~~d~~i~iwd~~~~~~-----~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~---  145 (378)
                      ..+++|.+. ++++|     .|+|++.|++|++|+++....     ++. ....+..+.+.|+||-+-+++....|.   
T Consensus        80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~-nve~dhpT~V~FapDc~s~vv~~~~g~~l~  158 (420)
T KOG2096|consen   80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQ-NVEYDHPTRVVFAPDCKSVVVSVKRGNKLC  158 (420)
T ss_pred             hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhc-cccCCCceEEEECCCcceEEEEEccCCEEE
Confidence            457899876 99999     999999999999999986431     211 122357889999999987776665555   


Q ss_pred             ------------------------eeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee---cCCceEEEEe
Q 046394          146 ------------------------MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL---PGHAKTLDFS  198 (378)
Q Consensus       146 ------------------------~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~~s  198 (378)
                                              -..|.-.|..+-...++.+|++++.|..|.|||++ |+.+.++   .......+.|
T Consensus       159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavS  237 (420)
T KOG2096|consen  159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVS  237 (420)
T ss_pred             EEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeC
Confidence                                    22356667777777889999999999999999998 9999888   4567788999


Q ss_pred             cCCCc----------cccCC--------CCCceEEEeeccCCcceeeeEEcCCCCeEEEecCCCeEEEE
Q 046394          199 RKDSG----------DFSGS--------HNYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGIL  249 (378)
Q Consensus       199 p~g~~----------~~~~~--------~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~  249 (378)
                      |+|++          .+|..        ..-..++.+.+ |.+.|+.++|||+...+++.+.||..++|
T Consensus       238 P~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkG-H~saV~~~aFsn~S~r~vtvSkDG~wriw  305 (420)
T KOG2096|consen  238 PDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKG-HQSAVLAAAFSNSSTRAVTVSKDGKWRIW  305 (420)
T ss_pred             CCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheecc-chhheeeeeeCCCcceeEEEecCCcEEEe
Confidence            99997          22321        11123456777 89999999999999666665555544444

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.72  E-value=4.7e-15  Score=133.29  Aligned_cols=128  Identities=14%  Similarity=0.222  Sum_probs=101.3

Q ss_pred             eEEEe-ccceeeeeecccceeeEE--eecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEee----cc-CC--
Q 046394           18 TWRIK-QEAIAREVDILSSRNQYD--IMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCS----KE-HG--   86 (378)
Q Consensus        18 ~~~~~-~~~~i~~~d~~~~~~~~~--l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~----~~-~~--   86 (378)
                      .+.+. .++.+..++...+...+.  |....+.|.+++|+|++..|++|+.||.|++|| ..+..++..    .. ..  
T Consensus       124 ~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~  203 (691)
T KOG2048|consen  124 ILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKRE  203 (691)
T ss_pred             eEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCC
Confidence            33444 677777777766655444  344457899999999999999999999999999 556555521    11 11  


Q ss_pred             C-e-eEEEE----EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe
Q 046394           87 E-V-LKLQF----LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT  145 (378)
Q Consensus        87 ~-~-~~l~~----~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~  145 (378)
                      . . .++.|    .+++|..-|+|.+||...+..++.+..|...|.+++.++++..+++++.|+.
T Consensus       204 ~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~  268 (691)
T KOG2048|consen  204 PTIVWSVLFLRDSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPK  268 (691)
T ss_pred             ceEEEEEEEeecCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCc
Confidence            1 1 55555    8999999999999999999999999999999999999999999999999987

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.71  E-value=4.8e-16  Score=133.07  Aligned_cols=187  Identities=16%  Similarity=0.203  Sum_probs=142.5

Q ss_pred             ecCCCCceEEEEcCCC-CEEEEEeCCCcEEEEe-CCCCeEEeeccCCCe-eEEEE------EEEEEeCCCeEEEEEcCCC
Q 046394           42 MLPELGPYTLDFTSSG-RYMAAAGCKGYPYFYN-RDGTELHCSKEHGEV-LKLQF------LLASINKLGQLRYQNVTMG  112 (378)
Q Consensus        42 ~~~~~~v~~~~~sp~g-~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~-~~l~~------~l~s~~~d~~i~iwd~~~~  112 (378)
                      .+|+..|.+++|+.+- +.||+||.|.+|.+|| .+|++..++..|.+. .++.|      .+++|+.|++|.+.|++..
T Consensus       240 ~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~  319 (463)
T KOG0270|consen  240 SGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDP  319 (463)
T ss_pred             ccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCc
Confidence            3788889999998754 5789999999999999 578888888888775 99999      9999999999999999853


Q ss_pred             cEEEEEecCCCCeeEEEEcCCCC-EEEEEcCCCe---------------eeecCCCEEEEEEec-CCCEEEEEECCCeEE
Q 046394          113 EIVGNFWTGLGRTDVIRVNPFNG-VVSLGHSGGT---------------MLCHQGPVSALAFHP-NGHLMATSGKDCKIK  175 (378)
Q Consensus       113 ~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~d~~---------------~~~h~~~v~~~~~sp-~g~~l~t~~~d~~i~  175 (378)
                      ......-...+.|..++|+|... .+++++.||.               +..|.++|.++++++ ...+++|++.|+.|+
T Consensus       320 ~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vk  399 (463)
T KOG0270|consen  320 SNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVK  399 (463)
T ss_pred             cccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEE
Confidence            22111112347899999999874 6778888888               788999999999998 445789999999999


Q ss_pred             EEEcCCceeeeeecCCceEEEEecCCCccccCCCCCceEEEeeccCCcceeeeEEcCCCC-eEEEecCCCeEEEEEcCCC
Q 046394          176 IWDLRKYEVLQTLPGHAKTLDFSRKDSGDFSGSHNYNRYMGYSMVKGYQIGKVSFRPYED-VLGIGHSMGVSGILIPGSG  254 (378)
Q Consensus       176 iwd~~~~~~~~~~~~~i~~~~~sp~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~-~l~~~~~~g~~~~~~~~s~  254 (378)
                      +|++..-.                           ...+..+.. .-+...|.++.|+-. +||+|+..+..++|..-..
T Consensus       400 lw~~~~~~---------------------------~~~v~~~~~-~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~  451 (463)
T KOG0270|consen  400 LWKFDVDS---------------------------PKSVKEHSF-KLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTN  451 (463)
T ss_pred             EEeecCCC---------------------------Ccccccccc-cccceeecccCCCcceEEEecCccceEEEeecccC
Confidence            99986422                           111222221 223467788888764 6788888888888875444


Q ss_pred             Cc
Q 046394          255 EP  256 (378)
Q Consensus       255 d~  256 (378)
                      .+
T Consensus       452 ~~  453 (463)
T KOG0270|consen  452 SP  453 (463)
T ss_pred             hh
Confidence            33

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.71  E-value=2.2e-14  Score=126.34  Aligned_cols=184  Identities=13%  Similarity=0.129  Sum_probs=131.7

Q ss_pred             EeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEE-eCCCcEEEEeCC-CCeEEeeccCCCeeEEEE-----
Q 046394           21 IKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAA-GCKGYPYFYNRD-GTELHCSKEHGEVLKLQF-----   93 (378)
Q Consensus        21 ~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~-~~dg~i~iwd~~-~~~~~~~~~~~~~~~l~~-----   93 (378)
                      ...++.+.+||+.+++....+..+ ..+..++|+|+++.++++ +.++.|.+||.. +..+..+..+..+.+++|     
T Consensus        49 ~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~  127 (300)
T TIGR03866        49 ASDSDTIQVIDLATGEVIGTLPSG-PDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGK  127 (300)
T ss_pred             ECCCCeEEEEECCCCcEEEeccCC-CCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCC
Confidence            345789999999998887777665 446789999999977655 458999999964 445555554444567777     


Q ss_pred             EEEEEeCCC-eEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEc-CCCe--------------eeecC-----C-
Q 046394           94 LLASINKLG-QLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGH-SGGT--------------MLCHQ-----G-  151 (378)
Q Consensus        94 ~l~s~~~d~-~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~--------------~~~h~-----~-  151 (378)
                      ++++++.++ .+.+||..++.....+.. ...+.+++|+|++..|++++ .++.              +..+.     . 
T Consensus       128 ~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~  206 (300)
T TIGR03866       128 IVVNTSETTNMAHFIDTKTYEIVDNVLV-DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEA  206 (300)
T ss_pred             EEEEEecCCCeEEEEeCCCCeEEEEEEc-CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeeccccccccc
Confidence            666666654 577889988877665543 34567899999999886554 4554              11111     1 


Q ss_pred             -CEEEEEEecCCCEEEE-EECCCeEEEEEcCCceeeeee--cCCceEEEEecCCCcccc
Q 046394          152 -PVSALAFHPNGHLMAT-SGKDCKIKIWDLRKYEVLQTL--PGHAKTLDFSRKDSGDFS  206 (378)
Q Consensus       152 -~v~~~~~sp~g~~l~t-~~~d~~i~iwd~~~~~~~~~~--~~~i~~~~~sp~g~~~~~  206 (378)
                       ....++|+|+|+++++ .+.++.|.+||+.+++.+..+  ...+.+++|+|+|.+.+.
T Consensus       207 ~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~  265 (300)
T TIGR03866       207 VQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLVGQRVWQLAFTPDEKYLLT  265 (300)
T ss_pred             CCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEeCCCcceEEECCCCCEEEE
Confidence             1246889999998544 456778999999998887665  567899999999986443

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.69  E-value=1.6e-15  Score=135.31  Aligned_cols=242  Identities=9%  Similarity=0.031  Sum_probs=160.2

Q ss_pred             CeeecCCceeeEEEec-cceeeeeecccceee------EEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCCCe-E
Q 046394            8 GYLEAEGVEKTWRIKQ-EAIAREVDILSSRNQ------YDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTE-L   79 (378)
Q Consensus         8 ~~l~~~~~~~~~~~~~-~~~i~~~d~~~~~~~------~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~-~   79 (378)
                      .|-.+.+.+..+.+.. ++.|.++|.....-.      .....|...|..+.|.|....|++++.|.++++||+.+.. .
T Consensus        56 sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~  135 (720)
T KOG0321|consen   56 SFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLV  135 (720)
T ss_pred             cccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceee
Confidence            4555556666666654 788999987654332      4456799999999999966789999999999999965433 3


Q ss_pred             E--eeccCCCe-eEEEE------EEEEEeCCCeEEEEEcCCCc--------------------E-------EEEEecCCC
Q 046394           80 H--CSKEHGEV-LKLQF------LLASINKLGQLRYQNVTMGE--------------------I-------VGNFWTGLG  123 (378)
Q Consensus        80 ~--~~~~~~~~-~~l~~------~l~s~~~d~~i~iwd~~~~~--------------------~-------~~~~~~~~~  123 (378)
                      .  .+.+|.+. .+++|      .|++|+.||.|.|||++-..                    +       +.....+..
T Consensus       136 G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~  215 (720)
T KOG0321|consen  136 GGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASN  215 (720)
T ss_pred             cceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccC
Confidence            3  37889886 88888      99999999999999985321                    0       001112233


Q ss_pred             CeeE---EEEcCCCCEEEEEcC-CCe----------------------eeec---CCCEEEEEEecCCCEEEEEECCCeE
Q 046394          124 RTDV---IRVNPFNGVVSLGHS-GGT----------------------MLCH---QGPVSALAFHPNGHLMATSGKDCKI  174 (378)
Q Consensus       124 ~v~~---~~~s~~~~~l~~~~~-d~~----------------------~~~h---~~~v~~~~~sp~g~~l~t~~~d~~i  174 (378)
                      .+..   +.+..|...||+++. |+.                      +..|   ...++++.....|.+|.+.+.|++|
T Consensus       216 ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sI  295 (720)
T KOG0321|consen  216 TIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSI  295 (720)
T ss_pred             ceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcE
Confidence            4444   666778888888877 666                      2233   3457788888888888777779999


Q ss_pred             EEEEcCCcee--eeee-cCCc----eEEEEecCCCc----------cccCCCCC-ceEEEeeccCCcceeeeEEcCCCC-
Q 046394          175 KIWDLRKYEV--LQTL-PGHA----KTLDFSRKDSG----------DFSGSHNY-NRYMGYSMVKGYQIGKVSFRPYED-  235 (378)
Q Consensus       175 ~iwd~~~~~~--~~~~-~~~i----~~~~~sp~g~~----------~~~~~~~~-~~~~~~~~~~~~~v~~~~~sp~g~-  235 (378)
                      ++|++.+...  +..+ +..+    ..-..+||+.+          .+|..... .+...+.+ |...|++++|.|... 
T Consensus       296 y~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~G-ht~eVt~V~w~pS~~t  374 (720)
T KOG0321|consen  296 YFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLG-HTREVTTVRWLPSATT  374 (720)
T ss_pred             EEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhC-cceEEEEEeeccccCC
Confidence            9999986432  3333 2111    22345666665          34433222 22334445 888899999998652 


Q ss_pred             eEEEecCCCeEEEEE
Q 046394          236 VLGIGHSMGVSGILI  250 (378)
Q Consensus       236 ~l~~~~~~g~~~~~~  250 (378)
                      -++++++|-.+.+|.
T Consensus       375 ~v~TcSdD~~~kiW~  389 (720)
T KOG0321|consen  375 PVATCSDDFRVKIWR  389 (720)
T ss_pred             CceeeccCcceEEEe
Confidence            334445555444443

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.69  E-value=5.8e-16  Score=138.18  Aligned_cols=214  Identities=13%  Similarity=0.122  Sum_probs=144.5

Q ss_pred             eccceeeeeecccceeeEE--ee--cCCCCceEEEEcC-CCCEEEEEeCCCcEEEEeCC--------CCeEEeeccCCCe
Q 046394           22 KQEAIAREVDILSSRNQYD--IM--LPELGPYTLDFTS-SGRYMAAAGCKGYPYFYNRD--------GTELHCSKEHGEV   88 (378)
Q Consensus        22 ~~~~~i~~~d~~~~~~~~~--l~--~~~~~v~~~~~sp-~g~~l~~~~~dg~i~iwd~~--------~~~~~~~~~~~~~   88 (378)
                      ...+.|-||++...-.+-.  +.  .....|+.+.|.| |...||+++.||.|++|.+.        ..+...+.+|..-
T Consensus       600 g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eK  679 (1012)
T KOG1445|consen  600 GSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEK  679 (1012)
T ss_pred             CCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccce
Confidence            4478899998865433211  11  1235688999999 66789999999999999942        2345678888875


Q ss_pred             -eEEEE------EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCeeeecCCCEEEEEEecC
Q 046394           89 -LKLQF------LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGTMLCHQGPVSALAFHPN  161 (378)
Q Consensus        89 -~~l~~------~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~~~~h~~~v~~~~~sp~  161 (378)
                       .++.|      .|++++.|.+|.+||+.++.....+.                            +|.+.|.+++|||+
T Consensus       680 I~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~----------------------------gHtdqIf~~AWSpd  731 (1012)
T KOG1445|consen  680 ITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLV----------------------------GHTDQIFGIAWSPD  731 (1012)
T ss_pred             EEEEEecchhhhHhhhhhccceeeeeehhhhhhhheec----------------------------cCcCceeEEEECCC
Confidence             99999      89999999999999999888766664                            78889999999999


Q ss_pred             CCEEEEEECCCeEEEEEcCCcee-eeee----cCCceEEEEecCCCccccCCC---CCceEEEeec--cCCcceeeeEEc
Q 046394          162 GHLMATSGKDCKIKIWDLRKYEV-LQTL----PGHAKTLDFSRKDSGDFSGSH---NYNRYMGYSM--VKGYQIGKVSFR  231 (378)
Q Consensus       162 g~~l~t~~~d~~i~iwd~~~~~~-~~~~----~~~i~~~~~sp~g~~~~~~~~---~~~~~~~~~~--~~~~~v~~~~~s  231 (378)
                      |+.++|.+.||+|++|..+++.. ++.-    ......+.|.-||.+.+...-   ....+..+..  ....+++.....
T Consensus       732 Gr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lD  811 (1012)
T KOG1445|consen  732 GRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLD  811 (1012)
T ss_pred             CcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeec
Confidence            99999999999999999988553 4443    345577889999987443221   1111211111  011223222222


Q ss_pred             CCCCeEEEecCCCeEEEEEcCCCCcccccccC
Q 046394          232 PYEDVLGIGHSMGVSGILIPGSGEPNFDSWVA  263 (378)
Q Consensus       232 p~g~~l~~~~~~g~~~~~~~~s~d~~i~~w~~  263 (378)
                      -.-..|+--.+.....+|++|.+|..+..|++
T Consensus       812 vaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv  843 (1012)
T KOG1445|consen  812 VAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEV  843 (1012)
T ss_pred             ccCccccccccCCCceEEEecCCCceEEEEEe
Confidence            11122332222223366778888888777764

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.69  E-value=4e-15  Score=122.98  Aligned_cols=203  Identities=16%  Similarity=0.139  Sum_probs=152.4

Q ss_pred             CCCCceEEEEcCCC----CEEEEEeCCCcEEEEe-CCCCeEEeeccCCCe-eEEEE------EEEEEeCCCeEEEEEcCC
Q 046394           44 PELGPYTLDFTSSG----RYMAAAGCKGYPYFYN-RDGTELHCSKEHGEV-LKLQF------LLASINKLGQLRYQNVTM  111 (378)
Q Consensus        44 ~~~~v~~~~~sp~g----~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~-~~l~~------~l~s~~~d~~i~iwd~~~  111 (378)
                      |...-+.++|+-+.    .++|+||.-|.|+|.| ..+.....+.+|... +.+.|      ++++++.|.+|++||+++
T Consensus        88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~  167 (385)
T KOG1034|consen   88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQT  167 (385)
T ss_pred             CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccC
Confidence            66677888887543    4789999999999999 677788889999986 99998      999999999999999999


Q ss_pred             CcEEEEEe---cCCCCeeEEEEcCCCCEEEEEcCCCe------------------------------------------e
Q 046394          112 GEIVGNFW---TGLGRTDVIRVNPFNGVVSLGHSGGT------------------------------------------M  146 (378)
Q Consensus       112 ~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~~d~~------------------------------------------~  146 (378)
                      ..++..|.   +|.+.|.++.|+++|.+|++++.|..                                          .
T Consensus       168 ~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~  247 (385)
T KOG1034|consen  168 DVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTT  247 (385)
T ss_pred             CeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccccccc
Confidence            99998876   47789999999999999999999988                                          1


Q ss_pred             eecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCC-cee-------------eeee---cCCceEEEEec----------
Q 046394          147 LCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRK-YEV-------------LQTL---PGHAKTLDFSR----------  199 (378)
Q Consensus       147 ~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~-~~~-------------~~~~---~~~i~~~~~sp----------  199 (378)
                      .-|...|-|+.|-  |+++++=|.++.|..|-... .+.             +.++   ...++-+.|+-          
T Consensus       248 diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~g  325 (385)
T KOG1034|consen  248 DIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALG  325 (385)
T ss_pred             ccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhc
Confidence            2255555566664  57899999999999997721 111             2222   23455555543          


Q ss_pred             --CCCccccCCCCCceE----EEeeccCCcceeeeEEcCCCCeEEEecCCCeEEEE
Q 046394          200 --KDSGDFSGSHNYNRY----MGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGIL  249 (378)
Q Consensus       200 --~g~~~~~~~~~~~~~----~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~  249 (378)
                        .|...+|+.....+.    ..+.- .+..|...+||.||.+|+...++|++--|
T Consensus       326 nq~g~v~vwdL~~~ep~~~ttl~~s~-~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrw  380 (385)
T KOG1034|consen  326 NQSGKVYVWDLDNNEPPKCTTLTHSK-SGSTVRQTSFSRDGSILVLVCDDGTVWRW  380 (385)
T ss_pred             cCCCcEEEEECCCCCCccCceEEecc-ccceeeeeeecccCcEEEEEeCCCcEEEE
Confidence              244577776554442    22222 46789999999999988888888865443

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.69  E-value=2.6e-15  Score=123.81  Aligned_cols=193  Identities=14%  Similarity=0.137  Sum_probs=145.7

Q ss_pred             eccceeeeeecccceeeEEeec--CCC---CceEEEEcCCCCEEEEEeCCCcEEEEeC--CCCeE--Ee-e----ccCCC
Q 046394           22 KQEAIAREVDILSSRNQYDIML--PEL---GPYTLDFTSSGRYMAAAGCKGYPYFYNR--DGTEL--HC-S----KEHGE   87 (378)
Q Consensus        22 ~~~~~i~~~d~~~~~~~~~l~~--~~~---~v~~~~~sp~g~~l~~~~~dg~i~iwd~--~~~~~--~~-~----~~~~~   87 (378)
                      +.+.-|++||..+|+...++.+  |..   +..+++|+|||.+|+.| ...+|+++|.  .|...  .. +    .+..+
T Consensus       130 sr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~g  208 (406)
T KOG2919|consen  130 SRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKG  208 (406)
T ss_pred             cccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhcccccccc
Confidence            3467899999999998777665  333   45699999999999877 5679999994  34322  11 1    12245


Q ss_pred             e-eEEEE------EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe---------------
Q 046394           88 V-LKLQF------LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT---------------  145 (378)
Q Consensus        88 ~-~~l~~------~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~---------------  145 (378)
                      + .+++|      .++.++...++-||.-..+.++..+.+|.+.|+.++|.++|+.|++|.....               
T Consensus       209 iisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~  288 (406)
T KOG2919|consen  209 IISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVY  288 (406)
T ss_pred             eeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhh
Confidence            5 77888      8899999999999998889999999999999999999999999999886443               


Q ss_pred             -eeecCC---CEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeeecCCceEEEEecCCCccccCCCCCceEEEeeccC
Q 046394          146 -MLCHQG---PVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHAKTLDFSRKDSGDFSGSHNYNRYMGYSMVK  221 (378)
Q Consensus       146 -~~~h~~---~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~~~~i~~~~~sp~g~~~~~~~~~~~~~~~~~~~~  221 (378)
                       +..|.+   .=.-+...|+|++|++|+.||.|++||+..                            .+.....+.. +
T Consensus       289 ~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~----------------------------~gn~~sv~~~-~  339 (406)
T KOG2919|consen  289 ALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKD----------------------------LGNEVSVTGN-Y  339 (406)
T ss_pred             hhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCC----------------------------CCCccccccc-c
Confidence             444443   222345678999999999999999999976                            1222333333 6


Q ss_pred             CcceeeeEEcCCCCeEEEecCCC
Q 046394          222 GYQIGKVSFRPYEDVLGIGHSMG  244 (378)
Q Consensus       222 ~~~v~~~~~sp~g~~l~~~~~~g  244 (378)
                      ...|+.|+++|-=.++|+++...
T Consensus       340 sd~vNgvslnP~mpilatssGqr  362 (406)
T KOG2919|consen  340 SDTVNGVSLNPIMPILATSSGQR  362 (406)
T ss_pred             cccccceecCcccceeeeccCce
Confidence            77899999999977777777663

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.68  E-value=6.2e-16  Score=124.01  Aligned_cols=205  Identities=13%  Similarity=0.098  Sum_probs=144.6

Q ss_pred             CceeeEEEeccceeeeeecccceeeEEee-cCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCCCe--------------
Q 046394           14 GVEKTWRIKQEAIAREVDILSSRNQYDIM-LPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTE--------------   78 (378)
Q Consensus        14 ~~~~~~~~~~~~~i~~~d~~~~~~~~~l~-~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~--------------   78 (378)
                      ..++.+...+.+++.+|++.+....-.+. .|...|+.+.--|+ ..+.+-+.|+.+.+|+..+..              
T Consensus        24 a~~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgF  102 (323)
T KOG0322|consen   24 ANERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGF  102 (323)
T ss_pred             cchhhhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccCcceEEEeeeecccccc
Confidence            36778888999999999999999888888 56678889988887 467788899999999853310              


Q ss_pred             -EEee-------------c--------------------------cCCC-eeEEEE--------EEEEEeCCCeEEEEEc
Q 046394           79 -LHCS-------------K--------------------------EHGE-VLKLQF--------LLASINKLGQLRYQNV  109 (378)
Q Consensus        79 -~~~~-------------~--------------------------~~~~-~~~l~~--------~l~s~~~d~~i~iwd~  109 (378)
                       ...+             .                          +..+ +.+..+        +++.|-.+|.+-+||+
T Consensus       103 CrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~  182 (323)
T KOG0322|consen  103 CRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDL  182 (323)
T ss_pred             ccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEc
Confidence             0000             0                          0001 122222        7778888999999999


Q ss_pred             CCCcEEEE----------EecCCCCeeEEEEcCCCCEEEEEcCCCe------------------eeecCCCEEEEEEecC
Q 046394          110 TMGEIVGN----------FWTGLGRTDVIRVNPFNGVVSLGHSGGT------------------MLCHQGPVSALAFHPN  161 (378)
Q Consensus       110 ~~~~~~~~----------~~~~~~~v~~~~~s~~~~~l~~~~~d~~------------------~~~h~~~v~~~~~sp~  161 (378)
                      .++..+..          ...|..+|.++.|.+.-..=++|+.+..                  +.--+..|..+.+-||
T Consensus       183 S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD  262 (323)
T KOG0322|consen  183 STGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPD  262 (323)
T ss_pred             cCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccC
Confidence            98743333          3346778888888764333233332222                  2223456778889999


Q ss_pred             CCEEEEEECCCeEEEEEcCCceeeeeecCCceEEEEecCCCccccCCCCCceEEEeeccCCcceeeeEEcCCCCeEEEec
Q 046394          162 GHLMATSGKDCKIKIWDLRKYEVLQTLPGHAKTLDFSRKDSGDFSGSHNYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGH  241 (378)
Q Consensus       162 g~~l~t~~~d~~i~iwd~~~~~~~~~~~~~i~~~~~sp~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~  241 (378)
                      ++.+||+|.|+.||||..++..+                             +..+.. |...|++++|+|+..++|+++
T Consensus       263 ~KIlATAGWD~RiRVyswrtl~p-----------------------------LAVLky-Hsagvn~vAfspd~~lmAaas  312 (323)
T KOG0322|consen  263 GKILATAGWDHRIRVYSWRTLNP-----------------------------LAVLKY-HSAGVNAVAFSPDCELMAAAS  312 (323)
T ss_pred             CcEEeecccCCcEEEEEeccCCc-----------------------------hhhhhh-hhcceeEEEeCCCCchhhhcc
Confidence            99999999999999999887543                             344444 778899999999987777777


Q ss_pred             CCCeEEEE
Q 046394          242 SMGVSGIL  249 (378)
Q Consensus       242 ~~g~~~~~  249 (378)
                      .|+.+.+|
T Consensus       313 kD~rISLW  320 (323)
T KOG0322|consen  313 KDARISLW  320 (323)
T ss_pred             CCceEEee
Confidence            77766665

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.68  E-value=2.2e-15  Score=135.32  Aligned_cols=199  Identities=13%  Similarity=0.110  Sum_probs=148.5

Q ss_pred             CceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeeccCCCe-eEEEE-----EEEEEeCCCeEEEEEcCCCcEEEEEe
Q 046394           47 GPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKEHGEV-LKLQF-----LLASINKLGQLRYQNVTMGEIVGNFW  119 (378)
Q Consensus        47 ~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~-~~l~~-----~l~s~~~d~~i~iwd~~~~~~~~~~~  119 (378)
                      .|+.++|-|||..|+.+.. ..+.+|| .+|..+.++++|.+. .+++|     .+++|+.|..|.+|+..-.-. ..+ 
T Consensus        14 ci~d~afkPDGsqL~lAAg-~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~-LkY-   90 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAG-SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGI-LKY-   90 (1081)
T ss_pred             chheeEECCCCceEEEecC-CEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccce-eee-
Confidence            7899999999998887754 4799999 688999999999987 99999     999999999999998643222 222 


Q ss_pred             cCCCCeeEEEEcCCCCEEEEEcCCCe---------eee--cCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee
Q 046394          120 TGLGRTDVIRVNPFNGVVSLGHSGGT---------MLC--HQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL  188 (378)
Q Consensus       120 ~~~~~v~~~~~s~~~~~l~~~~~d~~---------~~~--h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~  188 (378)
                      .|.+.|.|+.|+|-+..+++++-..-         ...  ....+.+++|..||++|+.|-.+|+|.|-+- +++..-.+
T Consensus        91 SH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk-~gEek~~I  169 (1081)
T KOG1538|consen   91 SHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNK-NGEEKVKI  169 (1081)
T ss_pred             ccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecC-CCCcceEE
Confidence            47899999999999999988876543         222  2456788999999999999999999998753 34543333


Q ss_pred             ------cCCceEEEEecCCCc---c---ccCCCCCceEEEeec-------cCCcceeeeEEcCCCCeEEEecCCCeEEEE
Q 046394          189 ------PGHAKTLDFSRKDSG---D---FSGSHNYNRYMGYSM-------VKGYQIGKVSFRPYEDVLGIGHSMGVSGIL  249 (378)
Q Consensus       189 ------~~~i~~~~~sp~g~~---~---~~~~~~~~~~~~~~~-------~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~  249 (378)
                            .++|.+++|+|....   +   +.+-.....+..+.+       .-.....++++.|+|.++..|+.++...++
T Consensus       170 ~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~f  249 (1081)
T KOG1538|consen  170 ERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLF  249 (1081)
T ss_pred             eCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecccccCCCCchhheeccCCcEEEEccCCCceEEE
Confidence                  368999999997542   1   111111112222222       012235689999999999999999977654

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.67  E-value=6.8e-15  Score=121.23  Aligned_cols=198  Identities=13%  Similarity=0.077  Sum_probs=148.1

Q ss_pred             CCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCC----CeEEeeccCCCe-eEEEE-----EEEEEeCCCeEEEEEcCC-C
Q 046394           44 PELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDG----TELHCSKEHGEV-LKLQF-----LLASINKLGQLRYQNVTM-G  112 (378)
Q Consensus        44 ~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~-~~l~~-----~l~s~~~d~~i~iwd~~~-~  112 (378)
                      -..+|+|.+|++|+..+|++.....|.||...+    ...+++..|... +.++|     .|++|+.|..-++|.... +
T Consensus         9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~   88 (361)
T KOG1523|consen    9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGG   88 (361)
T ss_pred             ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCC
Confidence            346899999999999999999999999999543    356889999987 99999     999999999999999843 3


Q ss_pred             --cEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe------------------eeecCCCEEEEEEecCCCEEEEEECCC
Q 046394          113 --EIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT------------------MLCHQGPVSALAFHPNGHLMATSGKDC  172 (378)
Q Consensus       113 --~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~------------------~~~h~~~v~~~~~sp~g~~l~t~~~d~  172 (378)
                        ++...+..++..++++.|+|.++.||+|+....                  -..+...|++++|+|++-+|++||.|+
T Consensus        89 ~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~  168 (361)
T KOG1523|consen   89 TWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDG  168 (361)
T ss_pred             eeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCc
Confidence              345556678899999999999999999998887                  223556789999999999999999999


Q ss_pred             eEEEEEcCCceeeeeecCCceEEEEecCCCccccCCCCCceEEEeeccCCcceeeeEEcCCCCeEEEecCCCeEEEEEcC
Q 046394          173 KIKIWDLRKYEVLQTLPGHAKTLDFSRKDSGDFSGSHNYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILIPG  252 (378)
Q Consensus       173 ~i~iwd~~~~~~~~~~~~~i~~~~~sp~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~~~  252 (378)
                      ..+||..-    ++.+....   +=+|-|...    .-+.++..+.. .++.|..+.|+|+|..|+-.+.|+.+.+....
T Consensus       169 k~rVfSay----IK~Vdekp---ap~pWgsk~----PFG~lm~E~~~-~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~  236 (361)
T KOG1523|consen  169 KCRVFSAY----IKGVDEKP---APTPWGSKM----PFGQLMSEASS-SGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAA  236 (361)
T ss_pred             ceeEEEEe----eeccccCC---CCCCCccCC----cHHHHHHhhcc-CCCceeeeEeCCCCCEeeEecCCCceEEeecC
Confidence            99998642    11110000   001111110    11223333323 56779999999999999988888877666543


Q ss_pred             C
Q 046394          253 S  253 (378)
Q Consensus       253 s  253 (378)
                      +
T Consensus       237 ~  237 (361)
T KOG1523|consen  237 G  237 (361)
T ss_pred             C
Confidence            3

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.66  E-value=1.9e-15  Score=133.24  Aligned_cols=197  Identities=15%  Similarity=0.095  Sum_probs=137.5

Q ss_pred             eeEEEeccceeeeeecc--------cceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCC-------C----C
Q 046394           17 KTWRIKQEAIAREVDIL--------SSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRD-------G----T   77 (378)
Q Consensus        17 ~~~~~~~~~~i~~~d~~--------~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~-------~----~   77 (378)
                      -.+..+.++++.+|++.        ..+.++++.+|.++|.|+++++++.++++|+-||+|+.|++.       .    .
T Consensus       308 ~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~v  387 (577)
T KOG0642|consen  308 VLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSV  387 (577)
T ss_pred             eEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcch
Confidence            35566778889999882        225689999999999999999999999999999999999621       1    2


Q ss_pred             eEEeeccCCCe-eEEEE-----EEEEEeCCCeEEEEEcCCCcEEEEEecC--CCCeeEEEEcCCCCEEEEEc-CCCe---
Q 046394           78 ELHCSKEHGEV-LKLQF-----LLASINKLGQLRYQNVTMGEIVGNFWTG--LGRTDVIRVNPFNGVVSLGH-SGGT---  145 (378)
Q Consensus        78 ~~~~~~~~~~~-~~l~~-----~l~s~~~d~~i~iwd~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~-~d~~---  145 (378)
                      ...++.||.+. ..+++     .|++|+.||++++|+.....+ .+|...  .+....+.+-.....+.+++ ..+.   
T Consensus       388 l~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~  466 (577)
T KOG0642|consen  388 LSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSI  466 (577)
T ss_pred             hccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccc
Confidence            23567888887 77877     999999999999999876655 334322  23334444433221111111 1111   


Q ss_pred             ------------------eeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeeecCCceEEEEecCCCccccC
Q 046394          146 ------------------MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHAKTLDFSRKDSGDFSG  207 (378)
Q Consensus       146 ------------------~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~~~~i~~~~~sp~g~~~~~~  207 (378)
                                        -......+.-+.++|.+.+.+++..|+.|+++|..++.+++                     
T Consensus       467 ~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~---------------------  525 (577)
T KOG0642|consen  467 DDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILH---------------------  525 (577)
T ss_pred             hhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccch---------------------
Confidence                              11112446677888888888999999999999988766543                     


Q ss_pred             CCCCceEEEeeccCCcceeeeEEcCCCCeEEEecCCC
Q 046394          208 SHNYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMG  244 (378)
Q Consensus       208 ~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g  244 (378)
                              .... |...++++++.|+|.+|++++.|+
T Consensus       526 --------s~~a-~~~svtslai~~ng~~l~s~s~d~  553 (577)
T KOG0642|consen  526 --------SMVA-HKDSVTSLAIDPNGPYLMSGSHDG  553 (577)
T ss_pred             --------heee-ccceecceeecCCCceEEeecCCc
Confidence                    3333 666799999999996665555554

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.66  E-value=1.2e-14  Score=119.12  Aligned_cols=161  Identities=13%  Similarity=0.190  Sum_probs=116.5

Q ss_pred             ccCCCe-eEEEE-----EEEEEeCCCeEEEEEcCCC----cEEEEEecCCCCeeEEEEcC--CCCEEEEEcCCCe-----
Q 046394           83 KEHGEV-LKLQF-----LLASINKLGQLRYQNVTMG----EIVGNFWTGLGRTDVIRVNP--FNGVVSLGHSGGT-----  145 (378)
Q Consensus        83 ~~~~~~-~~l~~-----~l~s~~~d~~i~iwd~~~~----~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~d~~-----  145 (378)
                      .+|.+. +++.|     .+|+|+.|++|.|||....    .+....+.|.+.|..+.|.+  -|+.+|+++.|++     
T Consensus        10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE   89 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE   89 (361)
T ss_pred             cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence            356665 88888     9999999999999997543    35667788999999999976  5799999999998     


Q ss_pred             ------------------eeecCCCEEEEEEec--CCCEEEEEECCCeEEEEEcCCc------eeeeee----------c
Q 046394          146 ------------------MLCHQGPVSALAFHP--NGHLMATSGKDCKIKIWDLRKY------EVLQTL----------P  189 (378)
Q Consensus       146 ------------------~~~h~~~v~~~~~sp--~g~~l~t~~~d~~i~iwd~~~~------~~~~~~----------~  189 (378)
                                        +......|+++.|.|  -|-.+|+++.||+||||+...-      .+.+.+          +
T Consensus        90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~  169 (361)
T KOG2445|consen   90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNK  169 (361)
T ss_pred             ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccccc
Confidence                              444567899999999  5788999999999999987542      222222          2


Q ss_pred             CCceEEEEecCCCc------------------cccC----CCCCceEEEeeccCCcceeeeEEcCCC----CeEEEecCC
Q 046394          190 GHAKTLDFSRKDSG------------------DFSG----SHNYNRYMGYSMVKGYQIGKVSFRPYE----DVLGIGHSM  243 (378)
Q Consensus       190 ~~i~~~~~sp~g~~------------------~~~~----~~~~~~~~~~~~~~~~~v~~~~~sp~g----~~l~~~~~~  243 (378)
                      .+..|+.|+|....                  .+|.    .+....+..+.+ |+.+|++++|.|+-    .+||+++.|
T Consensus       170 ~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d-~~dpI~di~wAPn~Gr~y~~lAvA~kD  248 (361)
T KOG2445|consen  170 QPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPD-HTDPIRDISWAPNIGRSYHLLAVATKD  248 (361)
T ss_pred             CcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCC-CCCcceeeeeccccCCceeeEEEeecC
Confidence            46788999874332                  2221    112223344445 88999999999974    234444444


Q ss_pred             C
Q 046394          244 G  244 (378)
Q Consensus       244 g  244 (378)
                      |
T Consensus       249 g  249 (361)
T KOG2445|consen  249 G  249 (361)
T ss_pred             c
Confidence            4

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.65  E-value=1.9e-15  Score=136.68  Aligned_cols=158  Identities=16%  Similarity=0.197  Sum_probs=136.8

Q ss_pred             cceeeeeecccceeeEEeecCCCCceEEEEcCC---CCEEEEEeCCCcEEEEeC--CCCeEEeeccCCCe-eEEEE----
Q 046394           24 EAIAREVDILSSRNQYDIMLPELGPYTLDFTSS---GRYMAAAGCKGYPYFYNR--DGTELHCSKEHGEV-LKLQF----   93 (378)
Q Consensus        24 ~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~---g~~l~~~~~dg~i~iwd~--~~~~~~~~~~~~~~-~~l~~----   93 (378)
                      -+.+++|++...+....+..|...|.|+.||..   .++||+++.|.-|+|||.  +...+.++.+|... +++.|    
T Consensus       480 ~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~g  559 (1080)
T KOG1408|consen  480 GGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNG  559 (1080)
T ss_pred             cCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecC
Confidence            478999999999999999999999999999852   368999999999999994  33344556665543 55555    


Q ss_pred             --------------------------------------------------EEEEEeCCCeEEEEEcCCCcEEEEEec---
Q 046394           94 --------------------------------------------------LLASINKLGQLRYQNVTMGEIVGNFWT---  120 (378)
Q Consensus        94 --------------------------------------------------~l~s~~~d~~i~iwd~~~~~~~~~~~~---  120 (378)
                                                                        ++++++.|..|+|||+.+|+.+..|++   
T Consensus       560 ln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~  639 (1080)
T KOG1408|consen  560 LNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRD  639 (1080)
T ss_pred             CceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeeccccc
Confidence                                                              789999999999999999999999986   


Q ss_pred             CCCCeeEEEEcCCCCEEEEEcCCCe--------------eeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCC
Q 046394          121 GLGRTDVIRVNPFNGVVSLGHSGGT--------------MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRK  181 (378)
Q Consensus       121 ~~~~v~~~~~s~~~~~l~~~~~d~~--------------~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~  181 (378)
                      |.+..-.+...|.|.|+++...|.+              +.+|...|+.+.|.+|.+.|++.+.||.|.||.+..
T Consensus       640 ~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~  714 (1080)
T KOG1408|consen  640 HEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL  714 (1080)
T ss_pred             CCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEECch
Confidence            4567888999999999999999988              789999999999999999999999999999999853

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.65  E-value=6.8e-16  Score=141.63  Aligned_cols=243  Identities=14%  Similarity=0.078  Sum_probs=186.6

Q ss_pred             ceeeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeeccCCCe-eEEE
Q 046394           15 VEKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKEHGEV-LKLQ   92 (378)
Q Consensus        15 ~~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~-~~l~   92 (378)
                      .-..+.+++|..++||...++.+..++.+|.+.++.++.+.+...+|+++.|..|++|- .++.++..+.+|++. ++++
T Consensus       202 g~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaia  281 (1113)
T KOG0644|consen  202 GRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIA  281 (1113)
T ss_pred             cceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhccccceeeec
Confidence            45677788899999999999999999999999999999999988999999999999999 688899999999987 9999


Q ss_pred             E-EEEEEeCCCeEEEEEcCCCcEEEEEe-----cCCCCeeEEEEcCCCCEEEEEcCCCe--------eeecCCCEEEEEE
Q 046394           93 F-LLASINKLGQLRYQNVTMGEIVGNFW-----TGLGRTDVIRVNPFNGVVSLGHSGGT--------MLCHQGPVSALAF  158 (378)
Q Consensus        93 ~-~l~s~~~d~~i~iwd~~~~~~~~~~~-----~~~~~v~~~~~s~~~~~l~~~~~d~~--------~~~h~~~v~~~~~  158 (378)
                      | =+++.+.||++++||.+ ..++...+     ....-+..+.|-..+..+++++.++.        +..+...+.-+.+
T Consensus       282 fsP~~sss~dgt~~~wd~r-~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~  360 (1113)
T KOG0644|consen  282 FSPRASSSDDGTCRIWDAR-LEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTR  360 (1113)
T ss_pred             cCccccCCCCCceEecccc-ccccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhhccceEEEec
Confidence            9 66688999999999987 11111110     12245667788888889999999887        2223333333333


Q ss_pred             ecCC-CEEEEEECCCeEEEEEcCCceeeeee--c-CCceEEEEec-----------CCCccccCCCCCceEEEeeccCCc
Q 046394          159 HPNG-HLMATSGKDCKIKIWDLRKYEVLQTL--P-GHAKTLDFSR-----------KDSGDFSGSHNYNRYMGYSMVKGY  223 (378)
Q Consensus       159 sp~g-~~l~t~~~d~~i~iwd~~~~~~~~~~--~-~~i~~~~~sp-----------~g~~~~~~~~~~~~~~~~~~~~~~  223 (378)
                      +.+- .+.+++-.+..+++|++.+|.+++.+  + ..+..+.++|           ||...+|+.-.+.++..+.-.| .
T Consensus       361 ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh-~  439 (1113)
T KOG0644|consen  361 SSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGH-G  439 (1113)
T ss_pred             cccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeeccc-c
Confidence            3322 34555556778999999999887776  3 5566777776           6677888887777776665424 4


Q ss_pred             ceeeeEEcCCCCeEEEecCCCeEEEEEcCCCCcccc
Q 046394          224 QIGKVSFRPYEDVLGIGHSMGVSGILIPGSGEPNFD  259 (378)
Q Consensus       224 ~v~~~~~sp~g~~l~~~~~~g~~~~~~~~s~d~~i~  259 (378)
                      .+.+..||+||..++...+-|.+.++-+|.++...+
T Consensus       440 kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~s~k~  475 (1113)
T KOG0644|consen  440 KLVDGKFSQDGTSIALSDDHGQLYILGTGQSKSQKK  475 (1113)
T ss_pred             eeeccccCCCCceEecCCCCCceEEeccCCCccccc
Confidence            577889999999999999999888887777765443

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.64  E-value=5.2e-14  Score=125.02  Aligned_cols=232  Identities=13%  Similarity=0.114  Sum_probs=163.1

Q ss_pred             ceeeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCC--EEEEEeCCCcEEEEe-CCCC--------------
Q 046394           15 VEKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGR--YMAAAGCKGYPYFYN-RDGT--------------   77 (378)
Q Consensus        15 ~~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~--~l~~~~~dg~i~iwd-~~~~--------------   77 (378)
                      .+-..+.+.++++++|.+.|+.++..+... +.|.|++|+|.+.  .||++ ..+.+.|.+ .-|.              
T Consensus       412 G~wlasGsdDGtvriWEi~TgRcvr~~~~d-~~I~~vaw~P~~~~~vLAvA-~~~~~~ivnp~~G~~~e~~~t~ell~~~  489 (733)
T KOG0650|consen  412 GEWLASGSDDGTVRIWEIATGRCVRTVQFD-SEIRSVAWNPLSDLCVLAVA-VGECVLIVNPIFGDRLEVGPTKELLASA  489 (733)
T ss_pred             cceeeecCCCCcEEEEEeecceEEEEEeec-ceeEEEEecCCCCceeEEEE-ecCceEEeCccccchhhhcchhhhhhcC
Confidence            445566778999999999999999998875 7899999999875  34444 333455555 1110              


Q ss_pred             -----------------------eEEe-eccCCCeeEEEE-----EEEEEeC---CCeEEEEEcCCCcEEEEEecCCCCe
Q 046394           78 -----------------------ELHC-SKEHGEVLKLQF-----LLASINK---LGQLRYQNVTMGEIVGNFWTGLGRT  125 (378)
Q Consensus        78 -----------------------~~~~-~~~~~~~~~l~~-----~l~s~~~---d~~i~iwd~~~~~~~~~~~~~~~~v  125 (378)
                                             -++. +.....+..+.|     +|++...   ...|.|+++.......-|....+.+
T Consensus       490 ~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~v  569 (733)
T KOG0650|consen  490 PNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLV  569 (733)
T ss_pred             CCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCce
Confidence                                   0111 222223477777     7776654   3568899998776666666677899


Q ss_pred             eEEEEcCCCCEEEEEcCCCe-------------eeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCc-eeeeee--c
Q 046394          126 DVIRVNPFNGVVSLGHSGGT-------------MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKY-EVLQTL--P  189 (378)
Q Consensus       126 ~~~~~s~~~~~l~~~~~d~~-------------~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~-~~~~~~--~  189 (378)
                      .++.|+|...+|++++....             +......|.+|+++|.|..|+.++.|+.+..||+.-. ++.+++  |
T Consensus       570 q~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H  649 (733)
T KOG0650|consen  570 QRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLH  649 (733)
T ss_pred             eEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhh
Confidence            99999999999999998776             4445668999999999999999999999999999754 455555  3


Q ss_pred             -CCceEEEEec----------CCCccccC---------CCCCceEEEeeccCCcc----eeeeEEcCCCCeEEEecCCCe
Q 046394          190 -GHAKTLDFSR----------KDSGDFSG---------SHNYNRYMGYSMVKGYQ----IGKVSFRPYEDVLGIGHSMGV  245 (378)
Q Consensus       190 -~~i~~~~~sp----------~g~~~~~~---------~~~~~~~~~~~~~~~~~----v~~~~~sp~g~~l~~~~~~g~  245 (378)
                       ..+++++|++          ||...++.         ....-++..+.+ |...    |.++.|+|...+|.+++.||.
T Consensus       650 ~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~g-H~~~~~~gVLd~~wHP~qpWLfsAGAd~t  728 (733)
T KOG0650|consen  650 EKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRG-HEKTNDLGVLDTIWHPRQPWLFSAGADGT  728 (733)
T ss_pred             hhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccC-ceeecccceEeecccCCCceEEecCCCce
Confidence             5667777655          44432221         111223444555 5443    888999999988888888877


Q ss_pred             EEEE
Q 046394          246 SGIL  249 (378)
Q Consensus       246 ~~~~  249 (378)
                      +.+|
T Consensus       729 irlf  732 (733)
T KOG0650|consen  729 IRLF  732 (733)
T ss_pred             EEee
Confidence            6655

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.64  E-value=4.4e-15  Score=123.31  Aligned_cols=162  Identities=15%  Similarity=0.204  Sum_probs=126.2

Q ss_pred             CEEEEEeCCCcEEEEe-CCCCeEEeeccCCCe-eEEEE-------EEEEEeCCCeEEEEEcCCCcEEEE--EecCC-CCe
Q 046394           58 RYMAAAGCKGYPYFYN-RDGTELHCSKEHGEV-LKLQF-------LLASINKLGQLRYQNVTMGEIVGN--FWTGL-GRT  125 (378)
Q Consensus        58 ~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~-~~l~~-------~l~s~~~d~~i~iwd~~~~~~~~~--~~~~~-~~v  125 (378)
                      ..+|++.+.|.|++|| .+++.+..+.++... +.+.|       .+.+|+.||+|++||+++......  +..+. .+.
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f  120 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF  120 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence            5689999999999999 678888999999886 88888       899999999999999998654433  33333 467


Q ss_pred             eEEEEcCCCCEEEEEcCCCe--------------------eeecCCCEEEEEEec-CCCEEEEEECCCeEEEEEcCCce-
Q 046394          126 DVIRVNPFNGVVSLGHSGGT--------------------MLCHQGPVSALAFHP-NGHLMATSGKDCKIKIWDLRKYE-  183 (378)
Q Consensus       126 ~~~~~s~~~~~l~~~~~d~~--------------------~~~h~~~v~~~~~sp-~g~~l~t~~~d~~i~iwd~~~~~-  183 (378)
                      .+++.+-.++.+++|+.--.                    ...|...|++++|+| +.++|+|||.||.|.|||+..-. 
T Consensus       121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E  200 (376)
T KOG1188|consen  121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNE  200 (376)
T ss_pred             eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcc
Confidence            78888888889998865433                    557999999999999 67899999999999999997532 


Q ss_pred             ---eeeee--cCCceEEEEecCCCccccCCCCCceEEEeec
Q 046394          184 ---VLQTL--PGHAKTLDFSRKDSGDFSGSHNYNRYMGYSM  219 (378)
Q Consensus       184 ---~~~~~--~~~i~~~~~sp~g~~~~~~~~~~~~~~~~~~  219 (378)
                         ++.++  ...|.++.|..++...+|.....+.+..|..
T Consensus       201 eDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~el  241 (376)
T KOG1188|consen  201 EDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYEL  241 (376)
T ss_pred             hhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEc
Confidence               24444  4669999999988655555444444444443

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.63  E-value=7.6e-15  Score=121.34  Aligned_cols=206  Identities=19%  Similarity=0.234  Sum_probs=151.6

Q ss_pred             ecCCCCceEEEEcC-----CCCEEEEEeCCCcEEEEe--CCC--CeEEeecc--CCCe-eEEEE---------EEEEEeC
Q 046394           42 MLPELGPYTLDFTS-----SGRYMAAAGCKGYPYFYN--RDG--TELHCSKE--HGEV-LKLQF---------LLASINK  100 (378)
Q Consensus        42 ~~~~~~v~~~~~sp-----~g~~l~~~~~dg~i~iwd--~~~--~~~~~~~~--~~~~-~~l~~---------~l~s~~~  100 (378)
                      ..|...++.++|.+     +-..+|++|.+ .+.+|.  .++  ..++.+..  |.+. ..++|         ++|.+|.
T Consensus        35 ed~~~~I~gv~fN~~~~~~e~~vfatvG~~-rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~  113 (385)
T KOG1034|consen   35 EDHNKPIFGVAFNSFLGCDEPQVFATVGGN-RVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGY  113 (385)
T ss_pred             ccCCCccceeeeehhcCCCCCceEEEeCCc-EEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecc
Confidence            45678899999984     12356666544 788998  333  23344332  3344 66666         8899999


Q ss_pred             CCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCC-CEEEEEcCCCe-----------------eeecCCCEEEEEEecCC
Q 046394          101 LGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFN-GVVSLGHSGGT-----------------MLCHQGPVSALAFHPNG  162 (378)
Q Consensus       101 d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~d~~-----------------~~~h~~~v~~~~~sp~g  162 (378)
                      -|.|+|.|+.++++...+.+|.+.|+.+.+.|+. +++++++.|..                 +.+|.+.|.++.|+++|
T Consensus       114 ~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~g  193 (385)
T KOG1034|consen  114 LGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDG  193 (385)
T ss_pred             eeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCC
Confidence            9999999999999999999999999999999987 78999999988                 67899999999999999


Q ss_pred             CEEEEEECCCeEEEEEcCCceeeeeecCCceEEEEecCCCccccCCC-CCceEE-EeeccCCcceeeeEEcCCCCeEEEe
Q 046394          163 HLMATSGKDCKIKIWDLRKYEVLQTLPGHAKTLDFSRKDSGDFSGSH-NYNRYM-GYSMVKGYQIGKVSFRPYEDVLGIG  240 (378)
Q Consensus       163 ~~l~t~~~d~~i~iwd~~~~~~~~~~~~~i~~~~~sp~g~~~~~~~~-~~~~~~-~~~~~~~~~v~~~~~sp~g~~l~~~  240 (378)
                      .+|++||.|.+|.+|++...+....+   -.+..|+|++...-+-.. ..-+.+ +-.. |...|.|+.|-  |.++++-
T Consensus       194 d~i~ScGmDhslk~W~l~~~~f~~~l---E~s~~~~~~~t~~pfpt~~~~fp~fst~di-HrnyVDCvrw~--gd~ilSk  267 (385)
T KOG1034|consen  194 DRIASCGMDHSLKLWRLNVKEFKNKL---ELSITYSPNKTTRPFPTPKTHFPDFSTTDI-HRNYVDCVRWF--GDFILSK  267 (385)
T ss_pred             CeeeccCCcceEEEEecChhHHhhhh---hhhcccCCCCccCcCCcccccccccccccc-ccchHHHHHHH--hhheeec
Confidence            99999999999999999854432222   123567777765333222 122222 3334 88899999996  5677776


Q ss_pred             cCCCeEEEEEcCCC
Q 046394          241 HSMGVSGILIPGSG  254 (378)
Q Consensus       241 ~~~g~~~~~~~~s~  254 (378)
                      +-++.+..|.+|.-
T Consensus       268 scenaI~~w~pgkl  281 (385)
T KOG1034|consen  268 SCENAIVCWKPGKL  281 (385)
T ss_pred             ccCceEEEEecchh
Confidence            66666677776643

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.63  E-value=6e-15  Score=129.72  Aligned_cols=203  Identities=14%  Similarity=0.121  Sum_probs=143.1

Q ss_pred             eEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEee-ccCCCe-eEEEE-------EEEEEeCCCeEEEE
Q 046394           38 QYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCS-KEHGEV-LKLQF-------LLASINKLGQLRYQ  107 (378)
Q Consensus        38 ~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~-~~~~~~-~~l~~-------~l~s~~~d~~i~iw  107 (378)
                      ...|.+|++.|.|+.|+.+|.+|++|+.|-.+.||| ...+.++.+ .+|..- .++.|       ++++|..|..|+++
T Consensus        43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf  122 (758)
T KOG1310|consen   43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF  122 (758)
T ss_pred             hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence            456899999999999999999999999999999999 666677766 467654 88999       99999999999999


Q ss_pred             EcCC----------CcEEEEEecCCCCeeEEEEcCCC-CEEEEEcCCCe------------------------eeecCCC
Q 046394          108 NVTM----------GEIVGNFWTGLGRTDVIRVNPFN-GVVSLGHSGGT------------------------MLCHQGP  152 (378)
Q Consensus       108 d~~~----------~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~d~~------------------------~~~h~~~  152 (378)
                      |+..          ......+..|...|..|+-.|++ ..+.+++.||.                        +...--.
T Consensus       123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lie  202 (758)
T KOG1310|consen  123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIE  202 (758)
T ss_pred             ecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhhe
Confidence            9974          22344556688889999999999 79999999999                        1111123


Q ss_pred             EEEEEEec-CCCEEEEEECCCeEEEEEcCCc-eeeeee-------cCCceEE-EEecCCCccccCCCCCceEEEeeccCC
Q 046394          153 VSALAFHP-NGHLMATSGKDCKIKIWDLRKY-EVLQTL-------PGHAKTL-DFSRKDSGDFSGSHNYNRYMGYSMVKG  222 (378)
Q Consensus       153 v~~~~~sp-~g~~l~t~~~d~~i~iwd~~~~-~~~~~~-------~~~i~~~-~~sp~g~~~~~~~~~~~~~~~~~~~~~  222 (378)
                      ..|++++| +..+|+.|+.|-..++||.+.. +....-       +....|+ .|+|.+....    .+.....+     
T Consensus       203 lk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~----~gn~~~~~-----  273 (758)
T KOG1310|consen  203 LKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNS----QGNLDRYI-----  273 (758)
T ss_pred             eeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCc----ccccccce-----
Confidence            56889999 5667999999999999996532 111111       1122333 3555543110    11111111     


Q ss_pred             cceeeeEEcCCCCeEEEecCCCeEEEE
Q 046394          223 YQIGKVSFRPYEDVLGIGHSMGVSGIL  249 (378)
Q Consensus       223 ~~v~~~~~sp~g~~l~~~~~~g~~~~~  249 (378)
                      ..++-++|+|+|.-|.+.-....+.++
T Consensus       274 ~~~t~vtfnpNGtElLvs~~gEhVYlf  300 (758)
T KOG1310|consen  274 TCCTYVTFNPNGTELLVSWGGEHVYLF  300 (758)
T ss_pred             eeeEEEEECCCCcEEEEeeCCeEEEEE
Confidence            236789999999766655544443333

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.63  E-value=5.2e-14  Score=111.85  Aligned_cols=217  Identities=15%  Similarity=0.145  Sum_probs=150.5

Q ss_pred             CCceEEEEcCCCCEEEEEeCCCcEEEEeCC----------C-CeEEeeccCCCe-eEEEE---EEEEEeCCCeEEEEEcC
Q 046394           46 LGPYTLDFTSSGRYMAAAGCKGYPYFYNRD----------G-TELHCSKEHGEV-LKLQF---LLASINKLGQLRYQNVT  110 (378)
Q Consensus        46 ~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~----------~-~~~~~~~~~~~~-~~l~~---~l~s~~~d~~i~iwd~~  110 (378)
                      ..|++-+|+|.+++|++|+.+|.|.++.+.          | ..+...++|.++ ..++|   +|++|+ ||.|+-|...
T Consensus        11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~~Lls~g-dG~V~gw~W~   89 (325)
T KOG0649|consen   11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDDFLLSGG-DGLVYGWEWN   89 (325)
T ss_pred             HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehhheeecc-CceEEEeeeh
Confidence            456777899999999999999999999842          1 234556899987 99999   666665 4999999875


Q ss_pred             CCcE------EEEE--ec-----CCCCeeEEEEcCCCCEEEEEcCCCe--------------eeecCCCEEEEEEecCCC
Q 046394          111 MGEI------VGNF--WT-----GLGRTDVIRVNPFNGVVSLGHSGGT--------------MLCHQGPVSALAFHPNGH  163 (378)
Q Consensus       111 ~~~~------~~~~--~~-----~~~~v~~~~~s~~~~~l~~~~~d~~--------------~~~h~~~v~~~~~sp~g~  163 (378)
                      ....      +...  +.     .--.|+++...|..+-++.++.|+.              +.+|.+.|.++.--....
T Consensus        90 E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~  169 (325)
T KOG0649|consen   90 EEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANG  169 (325)
T ss_pred             hhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCc
Confidence            3211      1111  11     1235889999998877777777776              789999999998844444


Q ss_pred             EEEEEECCCeEEEEEcCCceeeeee----c---------CCceEEEEecC------C-CccccCCCCCceEEEeeccCCc
Q 046394          164 LMATSGKDCKIKIWDLRKYEVLQTL----P---------GHAKTLDFSRK------D-SGDFSGSHNYNRYMGYSMVKGY  223 (378)
Q Consensus       164 ~l~t~~~d~~i~iwd~~~~~~~~~~----~---------~~i~~~~~sp~------g-~~~~~~~~~~~~~~~~~~~~~~  223 (378)
                      .+++|+.||++||||+++++++..+    +         ..|.+++-+.|      | ...+|..+..++...+..  ..
T Consensus       170 qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp~lslwhLrsse~t~vfpi--pa  247 (325)
T KOG0649|consen  170 QILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGPKLSLWHLRSSESTCVFPI--PA  247 (325)
T ss_pred             ceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCCCceeEEeccCCCceEEEec--cc
Confidence            6999999999999999999998877    1         12344443332      2 137788777777777654  56


Q ss_pred             ceeeeEEcCCCCeEEEe-c-------CCCeEEEEEcCCCC-cccccccCCCc
Q 046394          224 QIGKVSFRPYEDVLGIG-H-------SMGVSGILIPGSGE-PNFDSWVANPF  266 (378)
Q Consensus       224 ~v~~~~~sp~g~~l~~~-~-------~~g~~~~~~~~s~d-~~i~~w~~~~~  266 (378)
                      ++..+.|..| ..|+.| +       .+|.+...++++.- .....|...|.
T Consensus       248 ~v~~v~F~~d-~vl~~G~g~~v~~~~l~Gvl~a~ip~~s~~c~s~s~~~~p~  298 (325)
T KOG0649|consen  248 RVHLVDFVDD-CVLIGGEGNHVQSYTLNGVLQANIPVESTACYSASWQTSPI  298 (325)
T ss_pred             ceeEeeeecc-eEEEeccccceeeeeeccEEEEeccCCccceeeecccCCce
Confidence            7888999755 344444 2       35555555555443 34556665553

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.63  E-value=5.3e-14  Score=123.99  Aligned_cols=284  Identities=11%  Similarity=0.095  Sum_probs=185.7

Q ss_pred             CceEEEEcCCCCEEEEEeCCCcEEEEeC-CCCeEEeeccCCCeeEEEE-----EEEEEeC-----------CCeEEEEEc
Q 046394           47 GPYTLDFTSSGRYMAAAGCKGYPYFYNR-DGTELHCSKEHGEVLKLQF-----LLASINK-----------LGQLRYQNV  109 (378)
Q Consensus        47 ~v~~~~~sp~g~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~~~l~~-----~l~s~~~-----------d~~i~iwd~  109 (378)
                      .-+-+.|||-|.||+|-...| |.+|-- +-..++. ..|.++.-+.|     +|+|-+.           ...++|||+
T Consensus       212 Tetyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~R-F~Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI  289 (698)
T KOG2314|consen  212 TETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQR-FYHPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDI  289 (698)
T ss_pred             eeeeEEecCCceEEEEEeccc-eeeecCccHHHHHh-ccCCCceeeecCCccceEEEecCCccccCcccCCCceEEEEEc
Confidence            345789999999999998776 889973 3233333 35777766777     7777542           257999999


Q ss_pred             CCCcEEEEEecC--CCCe-eEEEEcCCCCEEEEEcCCCe-----------------------------------------
Q 046394          110 TMGEIVGNFWTG--LGRT-DVIRVNPFNGVVSLGHSGGT-----------------------------------------  145 (378)
Q Consensus       110 ~~~~~~~~~~~~--~~~v-~~~~~s~~~~~l~~~~~d~~-----------------------------------------  145 (378)
                      .+|...+.|...  ...+ .-..||.|+.++|.-..++.                                         
T Consensus       290 ~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~  369 (698)
T KOG2314|consen  290 ATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETN  369 (698)
T ss_pred             cccchhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCceeeecccccCCccccCcccCCCcceEEEEccccc
Confidence            999988887652  2223 23578888888887766665                                         


Q ss_pred             -----------------------------------------------------------------------eeecCCCEE
Q 046394          146 -----------------------------------------------------------------------MLCHQGPVS  154 (378)
Q Consensus       146 -----------------------------------------------------------------------~~~h~~~v~  154 (378)
                                                                                             ...-...|.
T Consensus       370 ~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi  449 (698)
T KOG2314|consen  370 NIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVI  449 (698)
T ss_pred             CCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchhee
Confidence                                                                                   112245677


Q ss_pred             EEEEecCCCEEEEEECC---CeEEEEEcCC----ceeeeee-cCCceEEEEecCCCccccCC---CCCceE---------
Q 046394          155 ALAFHPNGHLMATSGKD---CKIKIWDLRK----YEVLQTL-PGHAKTLDFSRKDSGDFSGS---HNYNRY---------  214 (378)
Q Consensus       155 ~~~~sp~g~~l~t~~~d---~~i~iwd~~~----~~~~~~~-~~~i~~~~~sp~g~~~~~~~---~~~~~~---------  214 (378)
                      ..+|-|.|+.+++.+..   .++.+|-+.+    ..++..+ ....+.+.|+|.|.+.+...   ..+...         
T Consensus       450 ~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~  529 (698)
T KOG2314|consen  450 AFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADL  529 (698)
T ss_pred             eeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEEecccccceEEEecchhhh
Confidence            88999999988876643   4788998873    2334455 57889999999999733211   011111         


Q ss_pred             -EEeeccCCcceeeeEEcCCCCeEEEecCCCeEEEEEcCCCCcccccccCCCccchhhhhhHhhhhhhcCCCCCceecCC
Q 046394          215 -MGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILIPGSGEPNFDSWVANPFETSKQRREKEVHSLLDKLPPETIMLNP  293 (378)
Q Consensus       215 -~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~~~s~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (378)
                       .+-.. .....+.+.|.|.|+|++++++.+      ...-|...++|+...-..    ++..+     .          
T Consensus       530 k~~~~~-eh~~at~veWDPtGRYvvT~ss~w------rhk~d~GYri~tfqGrll----~~~~i-----~----------  583 (698)
T KOG2314|consen  530 KDTASP-EHFAATEVEWDPTGRYVVTSSSSW------RHKVDNGYRIFTFQGRLL----KEDII-----D----------  583 (698)
T ss_pred             hhccCc-cccccccceECCCCCEEEEeeehh------hhccccceEEEEeecHHH----HHHHH-----H----------
Confidence             11111 223467899999999999987754      344577788887543211    11111     0          


Q ss_pred             CceeeecccccccCcchhhhhhHHHHHHHhhcccccccCCCCCCchhhHHHhhhhhhccccchhHH
Q 046394          294 SKIGTVREAKKKEKPTKQEREDEMEAAVEAVKGFVWKNKTKGRNKPSKKAKKKQELVAKAKRPFLD  359 (378)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~  359 (378)
                      ++.+..++++......+++.++..++.++..+.++++.++. ..++.++.-.|+++.+.+..+.+.
T Consensus       584 ~f~qF~WRPRPps~LS~e~~KkIkKnLKky~a~FeeqD~~e-~~~AsrElvekrRqlm~~f~~yR~  648 (698)
T KOG2314|consen  584 RFKQFLWRPRPPSLLSEEKQKKIKKNLKKYSAQFEEQDRLE-QSRASRELVEKRRQLMEQFTEYRE  648 (698)
T ss_pred             HHHhhccCCCCCcccCHHHHHHHHHHHHHHHHHHhhhhhHh-hhhhHHHHHHHHHHHHHHHHHHHH
Confidence            24455666666666677777777788888888887777765 556666766666777666544333

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.63  E-value=3.4e-14  Score=115.66  Aligned_cols=198  Identities=15%  Similarity=0.207  Sum_probs=140.7

Q ss_pred             eccceeeeeecccceee----EEe-----ecCCCCceEEEEcC-CCCEEEEEeCCCcEEEEeCCC----CeEEeeccCCC
Q 046394           22 KQEAIAREVDILSSRNQ----YDI-----MLPELGPYTLDFTS-SGRYMAAAGCKGYPYFYNRDG----TELHCSKEHGE   87 (378)
Q Consensus        22 ~~~~~i~~~d~~~~~~~----~~l-----~~~~~~v~~~~~sp-~g~~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~   87 (378)
                      +.+..+++|.+..-...    ..|     ..+..++++..|+- +-++|.+++-|.+..|||+..    .....+-+|..
T Consensus       118 Ts~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDK  197 (364)
T KOG0290|consen  118 TSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDK  197 (364)
T ss_pred             cccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCc
Confidence            44567777777632211    111     22445788999986 557899999999999999432    34556778876


Q ss_pred             e-eEEEE------EEEEEeCCCeEEEEEcCCCcEEEEEe---cCCCCeeEEEEcCCC-CEEEEEcCCCe-----------
Q 046394           88 V-LKLQF------LLASINKLGQLRYQNVTMGEIVGNFW---TGLGRTDVIRVNPFN-GVVSLGHSGGT-----------  145 (378)
Q Consensus        88 ~-~~l~~------~l~s~~~d~~i~iwd~~~~~~~~~~~---~~~~~v~~~~~s~~~-~~l~~~~~d~~-----------  145 (378)
                      . ..++|      .||++|.||.|+++|++.-.-...+-   ....+...++|++.. +++|+-..|..           
T Consensus       198 EV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~  277 (364)
T KOG0290|consen  198 EVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPC  277 (364)
T ss_pred             ceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCC
Confidence            5 99999      99999999999999998754332222   224567788888855 67777766665           


Q ss_pred             -----eeecCCCEEEEEEec-CCCEEEEEECCCeEEEEEcCCceeeeeecCCceEEEEecCCCccccCCCCCceEEEeec
Q 046394          146 -----MLCHQGPVSALAFHP-NGHLMATSGKDCKIKIWDLRKYEVLQTLPGHAKTLDFSRKDSGDFSGSHNYNRYMGYSM  219 (378)
Q Consensus       146 -----~~~h~~~v~~~~~sp-~g~~l~t~~~d~~i~iwd~~~~~~~~~~~~~i~~~~~sp~g~~~~~~~~~~~~~~~~~~  219 (378)
                           +.+|.+.|+.++|.| ....|+|+|.|..+.|||+.+.-.                       .....++..+..
T Consensus       278 tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~-----------------------~~~~dPilay~a  334 (364)
T KOG0290|consen  278 TPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPR-----------------------ENGEDPILAYTA  334 (364)
T ss_pred             cceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccc-----------------------cCCCCchhhhhc
Confidence                 789999999999999 567899999999999999976210                       012233444433


Q ss_pred             cCCcceeeeEEcCC-CCeEEEecCCC
Q 046394          220 VKGYQIGKVSFRPY-EDVLGIGHSMG  244 (378)
Q Consensus       220 ~~~~~v~~~~~sp~-g~~l~~~~~~g  244 (378)
                        +..|+.+.|+|. +.+++++....
T Consensus       335 --~~EVNqi~Ws~~~~Dwiai~~~kk  358 (364)
T KOG0290|consen  335 --GGEVNQIQWSSSQPDWIAICFGKK  358 (364)
T ss_pred             --cceeeeeeecccCCCEEEEEecCe
Confidence              456999999964 46777776654

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.62  E-value=1.3e-14  Score=127.18  Aligned_cols=185  Identities=11%  Similarity=0.108  Sum_probs=139.7

Q ss_pred             eeeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEeeccCCCe-eEEEE-
Q 046394           16 EKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTELHCSKEHGEV-LKLQF-   93 (378)
Q Consensus        16 ~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~l~~-   93 (378)
                      |.++.-++||.+.+.+ ..++.-..+..|.+++.|-.|+|||.-|++++.||.|++|..+|....++.....+ .|++| 
T Consensus        76 d~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~  154 (737)
T KOG1524|consen   76 DTLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWA  154 (737)
T ss_pred             ceEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEEC
Confidence            3344445688888776 35566678899999999999999999999999999999999888765555555444 99999 


Q ss_pred             -----EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe-------------eeecCCCEEE
Q 046394           94 -----LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT-------------MLCHQGPVSA  155 (378)
Q Consensus        94 -----~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~-------------~~~h~~~v~~  155 (378)
                           .+.+.+  +.+.|=.+.....+-....|.+-|.++.|++.+.++++|+.|-.             -..|..+|++
T Consensus       155 p~S~~vl~c~g--~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~S~~~ey~ITS  232 (737)
T KOG1524|consen  155 PNSNSIVFCQG--GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFTSAAEEYAITS  232 (737)
T ss_pred             CCCCceEEecC--CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCcccccCChhccceee
Confidence                 455443  56777766666666678899999999999999999999999977             3468899999


Q ss_pred             EEEecCCCEEEEEECCCeEEEEEcCCceeeeeecCCceEEEEecCCCccccCCCCCce
Q 046394          156 LAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHAKTLDFSRKDSGDFSGSHNYNR  213 (378)
Q Consensus       156 ~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~~~~i~~~~~sp~g~~~~~~~~~~~~  213 (378)
                      ++|+|+ ..++.+|. +++++=..+        .+.|-.++|||||.........+..
T Consensus       233 va~npd-~~~~v~S~-nt~R~~~p~--------~GSifnlsWS~DGTQ~a~gt~~G~v  280 (737)
T KOG1524|consen  233 VAFNPE-KDYLLWSY-NTARFSSPR--------VGSIFNLSWSADGTQATCGTSTGQL  280 (737)
T ss_pred             eeeccc-cceeeeee-eeeeecCCC--------ccceEEEEEcCCCceeeccccCceE
Confidence            999999 56666653 344421111        3678899999999864444444433

>PF08149 BING4CT: BING4CT (NUC141) domain; InterPro: IPR012952 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=99.62  E-value=9.6e-16  Score=99.33  Aligned_cols=73  Identities=63%  Similarity=1.105  Sum_probs=71.0

Q ss_pred             CCcceeeeEEcCCCCeEEEecCCCeEEEEEcCCCCcccccccCCCccchhhhhhHhhhhhhcCCCCCceecCC
Q 046394          221 KGYQIGKVSFRPYEDVLGIGHSMGVSGILIPGSGEPNFDSWVANPFETSKQRREKEVHSLLDKLPPETIMLNP  293 (378)
Q Consensus       221 ~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~~~s~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (378)
                      .+..|.++.|.|-..+|++|+..|+.+++++|+++.+++.+..+||++.++++|.|+++|++|+|+++|++||
T Consensus         8 ~~~~v~~~~F~PfEDvLgvGh~~G~sSiiVPGsGe~NfDs~e~NP~et~kqRrE~EV~~LLeKippd~I~LdP   80 (80)
T PF08149_consen    8 PGSPVESLRFCPFEDVLGVGHSKGFSSIIVPGSGEPNFDSLEANPFETKKQRREREVRSLLEKIPPDMITLDP   80 (80)
T ss_pred             CCCeeeeeEEechHHeeEeeccCceeEEeccCCCCCCCCcccCCcccchhHHhHHHHHHHHHhCCccceecCc
Confidence            5778999999999999999999999999999999999999999999999999999999999999999999986

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This C-terminal domain is found in the BING4 family of nucleolar WD40 repeat proteins [].

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.61  E-value=1.1e-15  Score=144.90  Aligned_cols=178  Identities=19%  Similarity=0.167  Sum_probs=130.4

Q ss_pred             CCceEEEEcCCCCE----EEEEeCCCcEEEEeCC----CC---eEEeeccCCCe-eEEEE------EEEEEeCCCeEEEE
Q 046394           46 LGPYTLDFTSSGRY----MAAAGCKGYPYFYNRD----GT---ELHCSKEHGEV-LKLQF------LLASINKLGQLRYQ  107 (378)
Q Consensus        46 ~~v~~~~~sp~g~~----l~~~~~dg~i~iwd~~----~~---~~~~~~~~~~~-~~l~~------~l~s~~~d~~i~iw  107 (378)
                      ..-+.++|++.|..    ||.|..||.|.+||..    +.   .+.++..|.+. ..+.|      ++|+|+.||.|.||
T Consensus        65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iW  144 (1049)
T KOG0307|consen   65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIW  144 (1049)
T ss_pred             ccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEe
Confidence            45679999998765    8888999999999942    22   34566778876 88999      99999999999999


Q ss_pred             EcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCeeeecCCCEEEEEEecC-CCEEEEEECCCeEEEEEcCCceeee
Q 046394          108 NVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGTMLCHQGPVSALAFHPN-GHLMATSGKDCKIKIWDLRKYEVLQ  186 (378)
Q Consensus       108 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~~~~h~~~v~~~~~sp~-g~~l~t~~~d~~i~iwd~~~~~~~~  186 (378)
                      |+..-+.-.++..                          ......|.+++|+.. .+.|++++.+|.+.|||++..+.+-
T Consensus       145 Dlnn~~tP~~~~~--------------------------~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii  198 (1049)
T KOG0307|consen  145 DLNKPETPFTPGS--------------------------QAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPII  198 (1049)
T ss_pred             ccCCcCCCCCCCC--------------------------CCCcccceEeccchhhhHHhhccCCCCCceeccccCCCccc
Confidence            9976443332210                          023567888888873 4568888889999999999887776


Q ss_pred             ee--c---CCceEEEEecCCCc--------------cccCCC-CCceEEEeeccCCcceeeeEEcCCC-CeEEEecCCCe
Q 046394          187 TL--P---GHAKTLDFSRKDSG--------------DFSGSH-NYNRYMGYSMVKGYQIGKVSFRPYE-DVLGIGHSMGV  245 (378)
Q Consensus       187 ~~--~---~~i~~~~~sp~g~~--------------~~~~~~-~~~~~~~~~~~~~~~v~~~~~sp~g-~~l~~~~~~g~  245 (378)
                      .+  +   ..+..+.|+|+...              .+|+.+ ...++..+.+ |...|.++.|++.+ .+|++++.|+.
T Consensus       199 ~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~-H~~GilslsWc~~D~~lllSsgkD~~  277 (1049)
T KOG0307|consen  199 KLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEG-HQRGILSLSWCPQDPRLLLSSGKDNR  277 (1049)
T ss_pred             ccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcc-cccceeeeccCCCCchhhhcccCCCC
Confidence            66  2   34788999998874              444432 2234444455 88889999999987 78888888886


Q ss_pred             EEEEE
Q 046394          246 SGILI  250 (378)
Q Consensus       246 ~~~~~  250 (378)
                      +..|-
T Consensus       278 ii~wN  282 (1049)
T KOG0307|consen  278 IICWN  282 (1049)
T ss_pred             eeEec
Confidence            65443

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.61  E-value=2.2e-14  Score=126.59  Aligned_cols=207  Identities=17%  Similarity=0.146  Sum_probs=142.8

Q ss_pred             eEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCC---------CCeEEeeccCCCe-eEEEE-----EEEEEeCCC
Q 046394           38 QYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRD---------GTELHCSKEHGEV-LKLQF-----LLASINKLG  102 (378)
Q Consensus        38 ~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~---------~~~~~~~~~~~~~-~~l~~-----~l~s~~~d~  102 (378)
                      .+++..|...+..++|.|....|++++.||.|.+|++.         -.++.+|++|.++ .|+++     .+++|+.||
T Consensus       287 k~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg  366 (577)
T KOG0642|consen  287 KFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDG  366 (577)
T ss_pred             eeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCc
Confidence            45777899999999999999999999999999999961         2567899999997 88888     999999999


Q ss_pred             eEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCeeeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCc
Q 046394          103 QLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGTMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKY  182 (378)
Q Consensus       103 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~  182 (378)
                      +|+.|++....-  .+..+...+.                .+.+.||.+.|+.+++|+....|++|+.||++++|+....
T Consensus       367 ~I~~w~~p~n~d--p~ds~dp~vl----------------~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~  428 (577)
T KOG0642|consen  367 TIRCWNLPPNQD--PDDSYDPSVL----------------SGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEE  428 (577)
T ss_pred             eeeeeccCCCCC--cccccCcchh----------------ccceeccccceeeeeecccccceeeecCCceEEeeccCCc
Confidence            999998752111  1111100000                0115699999999999998889999999999999998776


Q ss_pred             eeeeee-----cCCceEEEEecCC-----------CccccCCCCCceEEEeec------cCCcceeeeEEcCCCCeEEEe
Q 046394          183 EVLQTL-----PGHAKTLDFSRKD-----------SGDFSGSHNYNRYMGYSM------VKGYQIGKVSFRPYEDVLGIG  240 (378)
Q Consensus       183 ~~~~~~-----~~~i~~~~~sp~g-----------~~~~~~~~~~~~~~~~~~------~~~~~v~~~~~sp~g~~l~~~  240 (378)
                      .+ .++     ++...++.+-...           .+.+.+......+..+..      .....++.+.++|.+.+..++
T Consensus       429 ~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~  507 (577)
T KOG0642|consen  429 SP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTA  507 (577)
T ss_pred             Cc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEec
Confidence            65 444     3444555543321           122222222222222211      011346677788888777777


Q ss_pred             cCCCeEE------------------------------EEEcCCCCcccccccC
Q 046394          241 HSMGVSG------------------------------ILIPGSGEPNFDSWVA  263 (378)
Q Consensus       241 ~~~g~~~------------------------------~~~~~s~d~~i~~w~~  263 (378)
                      ..++.++                              ++.+|+.|+.+++|..
T Consensus       508 hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kl  560 (577)
T KOG0642|consen  508 HEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKL  560 (577)
T ss_pred             ccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhc
Confidence            7777554                              5677777888888865

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.61  E-value=1.7e-14  Score=123.05  Aligned_cols=171  Identities=20%  Similarity=0.188  Sum_probs=127.1

Q ss_pred             eEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeeccCC-CeeEEEE-----EEEEEeCCCeEEEEEcCCCcEEEEEec-
Q 046394           49 YTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKEHG-EVLKLQF-----LLASINKLGQLRYQNVTMGEIVGNFWT-  120 (378)
Q Consensus        49 ~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~-~~~~l~~-----~l~s~~~d~~i~iwd~~~~~~~~~~~~-  120 (378)
                      .+++|+++|..|++|+.||++|||+ .+...+.....|. ++.++.|     +|++.+.| ..+||+..+|.++..... 
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~  226 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF  226 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence            5899999999999999999999999 6666555555555 5699999     89999999 899999999977766653 


Q ss_pred             -CCCCeeEEEEcCCC---CEEEEE-cCCCe--------------------eeecCCCEEEEEEecCCCEEEEEECCCeEE
Q 046394          121 -GLGRTDVIRVNPFN---GVVSLG-HSGGT--------------------MLCHQGPVSALAFHPNGHLMATSGKDCKIK  175 (378)
Q Consensus       121 -~~~~v~~~~~s~~~---~~l~~~-~~d~~--------------------~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~  175 (378)
                       .+..+..+.|+.|+   .+++.+ ...+.                    .......|.+++.+++|++++.|+.||.|-
T Consensus       227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVa  306 (398)
T KOG0771|consen  227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVA  306 (398)
T ss_pred             ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEE
Confidence             23456678888877   333222 22222                    111234799999999999999999999999


Q ss_pred             EEEcCCceeeeeecCCceEEEEecCCCccccCCCCCceEEEeeccCCcceeeeEEcCCCCeEEEecCCCeEEEE
Q 046394          176 IWDLRKYEVLQTLPGHAKTLDFSRKDSGDFSGSHNYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGIL  249 (378)
Q Consensus       176 iwd~~~~~~~~~~~~~i~~~~~sp~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~  249 (378)
                      |++..+.+.++                            ..-.. |...|+.+.|+||.+++++.+.+....++
T Consensus       307 i~~~~~lq~~~----------------------------~vk~a-H~~~VT~ltF~Pdsr~~~svSs~~~~~v~  351 (398)
T KOG0771|consen  307 IYDAKSLQRLQ----------------------------YVKEA-HLGFVTGLTFSPDSRYLASVSSDNEAAVT  351 (398)
T ss_pred             EEEeceeeeeE----------------------------eehhh-heeeeeeEEEcCCcCcccccccCCceeEE
Confidence            99987654332                            22223 77789999999999888876666554443

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.61  E-value=4.6e-14  Score=119.39  Aligned_cols=227  Identities=13%  Similarity=0.094  Sum_probs=163.8

Q ss_pred             EEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCC-------CeEEeeccCC--CeeEEEE-----EEEEEeCCCeE
Q 046394           39 YDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDG-------TELHCSKEHG--EVLKLQF-----LLASINKLGQL  104 (378)
Q Consensus        39 ~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~-------~~~~~~~~~~--~~~~l~~-----~l~s~~~d~~i  104 (378)
                      ..+.+|.+.|.++.||.++++|++|+.|-.+++|++..       +++.....|.  .+.+++|     .+++|+.+++|
T Consensus        50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~V  129 (609)
T KOG4227|consen   50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTV  129 (609)
T ss_pred             hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCccee
Confidence            34678999999999999999999999999999999532       3343333332  3499999     89999999999


Q ss_pred             EEEEcCCCcEEEEEecC--CCCeeEEEEcCCCCEEEEEcCCCe-----------------eeecCCCEEEEEEec-CCCE
Q 046394          105 RYQNVTMGEIVGNFWTG--LGRTDVIRVNPFNGVVSLGHSGGT-----------------MLCHQGPVSALAFHP-NGHL  164 (378)
Q Consensus       105 ~iwd~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~d~~-----------------~~~h~~~v~~~~~sp-~g~~  164 (378)
                      ...|+.+.+.+..+...  .+.|..+..+|..+.|++.+.++.                 .........++-|+| ...+
T Consensus       130 I~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~L  209 (609)
T KOG4227|consen  130 IKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPAL  209 (609)
T ss_pred             EeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCcee
Confidence            99999999988777533  358999999999999999998887                 111223456778999 5677


Q ss_pred             EEEEECCCeEEEEEcCCce-eeeee------cC---CceEEEEecCCCc-------------------------------
Q 046394          165 MATSGKDCKIKIWDLRKYE-VLQTL------PG---HAKTLDFSRKDSG-------------------------------  203 (378)
Q Consensus       165 l~t~~~d~~i~iwd~~~~~-~~~~~------~~---~i~~~~~sp~g~~-------------------------------  203 (378)
                      |++.+..+-+.+||.+... ++..+      +.   ...++.|+|.|..                               
T Consensus       210 i~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~G  289 (609)
T KOG4227|consen  210 ILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNG  289 (609)
T ss_pred             EEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCCc
Confidence            8899999999999997632 22221      11   1245666666640                               


Q ss_pred             ---------------------------cccCCC-----------------------CCceEEEeeccCCcceeeeEEcCC
Q 046394          204 ---------------------------DFSGSH-----------------------NYNRYMGYSMVKGYQIGKVSFRPY  233 (378)
Q Consensus       204 ---------------------------~~~~~~-----------------------~~~~~~~~~~~~~~~v~~~~~sp~  233 (378)
                                                 .+|...                       -...+.++++ |.+-++.|.|+|.
T Consensus       290 Y~N~~T~KS~~F~~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrG-HRSv~NQVRF~~H  368 (609)
T KOG4227|consen  290 YCNIKTIKSMTFIDDYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRG-HRSVPNQVRFSQH  368 (609)
T ss_pred             ceeeeeeeeeeeecceeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEec-ccccccceeecCC
Confidence                                       222110                       0123456777 8888999999999


Q ss_pred             CCeEEEecCCCeEEEEE----cCCCCcccccccCCCc
Q 046394          234 EDVLGIGHSMGVSGILI----PGSGEPNFDSWVANPF  266 (378)
Q Consensus       234 g~~l~~~~~~g~~~~~~----~~s~d~~i~~w~~~~~  266 (378)
                      ..+|++++-...+.+|.    +++.|+.|.-+....|
T Consensus       369 ~~~l~SSGVE~~~KlWS~~r~P~~~D~~~E~~~H~~Y  405 (609)
T KOG4227|consen  369 NNLLVSSGVENSFKLWSDHRLPWSYDLPFERRPHGTY  405 (609)
T ss_pred             cceEeccchhhheeccccccCCcccCCccccCCCccc
Confidence            98888888888888874    5666666655544333

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.60  E-value=9.4e-14  Score=128.09  Aligned_cols=177  Identities=12%  Similarity=0.039  Sum_probs=118.7

Q ss_pred             ceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCC---CcEEEEeCCCCeEEeeccCCCe-eEEEE-----EE
Q 046394           25 AIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCK---GYPYFYNRDGTELHCSKEHGEV-LKLQF-----LL   95 (378)
Q Consensus        25 ~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~-~~l~~-----~l   95 (378)
                      ..|.+||..... ...+..|...+.+.+|||||+.|+.++.+   ..|++||..+.....+....+. ..++|     .|
T Consensus       184 ~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~L  262 (429)
T PRK01742        184 YEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSRL  262 (429)
T ss_pred             EEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCCCEE
Confidence            578899986544 56677787889999999999999887653   3699999654433333222222 45777     45


Q ss_pred             EE-EeCCCeEEE--EEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEc-CCCe--------------eeecCCCEEEEE
Q 046394           96 AS-INKLGQLRY--QNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGH-SGGT--------------MLCHQGPVSALA  157 (378)
Q Consensus        96 ~s-~~~d~~i~i--wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~--------------~~~h~~~v~~~~  157 (378)
                      +. .+.+|.+.|  ||+.++.. ..+..+...+..+.|+|||+.|+.++ .++.              ...+.+  .+++
T Consensus       263 a~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~--~~~~  339 (429)
T PRK01742        263 AFASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGRG--YSAQ  339 (429)
T ss_pred             EEEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCCC--CCcc
Confidence            54 446776555  46655554 44555666788899999999776554 3443              111222  4578


Q ss_pred             EecCCCEEEEEECCCeEEEEEcCCceeeeee-cCCceEEEEecCCCcccc
Q 046394          158 FHPNGHLMATSGKDCKIKIWDLRKYEVLQTL-PGHAKTLDFSRKDSGDFS  206 (378)
Q Consensus       158 ~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~-~~~i~~~~~sp~g~~~~~  206 (378)
                      |+|+|++|+.++.++ +.+||+.++...... .....+++|+|||...++
T Consensus       340 ~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~~~~~~~~sPdG~~i~~  388 (429)
T PRK01742        340 ISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTFLDESPSISPNGIMIIY  388 (429)
T ss_pred             CCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCCCCCCceECCCCCEEEE
Confidence            999999998888765 556999887654322 233456789999886444

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.60  E-value=3.1e-14  Score=127.26  Aligned_cols=203  Identities=20%  Similarity=0.268  Sum_probs=140.1

Q ss_pred             eEEEEcCC---CCEEEEEeCCCcEEEEeCCCC-------eEEeeccCCCe-eEEEE-----EEEEEeCCCeEEEEEcCCC
Q 046394           49 YTLDFTSS---GRYMAAAGCKGYPYFYNRDGT-------ELHCSKEHGEV-LKLQF-----LLASINKLGQLRYQNVTMG  112 (378)
Q Consensus        49 ~~~~~sp~---g~~l~~~~~dg~i~iwd~~~~-------~~~~~~~~~~~-~~l~~-----~l~s~~~d~~i~iwd~~~~  112 (378)
                      ++..|++.   .+.||.+..||.|.++|....       .+.....|..+ .++.|     .|++++.|.++++||+.++
T Consensus        53 f~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s  132 (720)
T KOG0321|consen   53 FADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTS  132 (720)
T ss_pred             ccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccc
Confidence            45677653   357899999999999994322       23456678876 89999     9999999999999999998


Q ss_pred             cEEEE--EecCCCCeeEEEEcCCC-CEEEEEcCCCe-----------------------------------------eee
Q 046394          113 EIVGN--FWTGLGRTDVIRVNPFN-GVVSLGHSGGT-----------------------------------------MLC  148 (378)
Q Consensus       113 ~~~~~--~~~~~~~v~~~~~s~~~-~~l~~~~~d~~-----------------------------------------~~~  148 (378)
                      .++..  +.+|.+.|.+++|.|.+ ..|++|+.||.                                         -..
T Consensus       133 ~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA  212 (720)
T KOG0321|consen  133 RLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKA  212 (720)
T ss_pred             eeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccccc
Confidence            88776  88999999999999987 57888999998                                         223


Q ss_pred             cCCCEEE---EEEecCCCEEEEEEC-CCeEEEEEcCCceeeeee----------c----CCceEEEEecCCCccccCCCC
Q 046394          149 HQGPVSA---LAFHPNGHLMATSGK-DCKIKIWDLRKYEVLQTL----------P----GHAKTLDFSRKDSGDFSGSHN  210 (378)
Q Consensus       149 h~~~v~~---~~~sp~g~~l~t~~~-d~~i~iwd~~~~~~~~~~----------~----~~i~~~~~sp~g~~~~~~~~~  210 (378)
                      +...|.+   +.+..|...||++|. |+.|+|||++........          +    -.+.++.....|.+.+.+..+
T Consensus       213 ~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD  292 (720)
T KOG0321|consen  213 ASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTD  292 (720)
T ss_pred             ccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecC
Confidence            3344555   556678889999987 999999999975443322          1    235666666666665444433


Q ss_pred             CceE------------EEeecc--CCcceeeeEEcCCCCeEEEecCCCeEEEEEcC
Q 046394          211 YNRY------------MGYSMV--KGYQIGKVSFRPYEDVLGIGHSMGVSGILIPG  252 (378)
Q Consensus       211 ~~~~------------~~~~~~--~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~~~  252 (378)
                      ...|            ..+.+.  ....| .-..+||+.+|++|+.++...+|...
T Consensus       293 ~sIy~ynm~s~s~sP~~~~sg~~~~sf~v-ks~lSpd~~~l~SgSsd~~ayiw~vs  347 (720)
T KOG0321|consen  293 NSIYFYNMRSLSISPVAEFSGKLNSSFYV-KSELSPDDCSLLSGSSDEQAYIWVVS  347 (720)
T ss_pred             CcEEEEeccccCcCchhhccCcccceeee-eeecCCCCceEeccCCCcceeeeeec
Confidence            3322            222110  00111 12357888777777777766665543

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.60  E-value=4.6e-12  Score=113.23  Aligned_cols=226  Identities=12%  Similarity=0.071  Sum_probs=138.1

Q ss_pred             eccceeeeeeccc-ce--eeEEeecCCCCceEEEEcCCCCEEEEEe-CCCcEEEEeCC--CCe--EEeeccCCCeeEEEE
Q 046394           22 KQEAIAREVDILS-SR--NQYDIMLPELGPYTLDFTSSGRYMAAAG-CKGYPYFYNRD--GTE--LHCSKEHGEVLKLQF   93 (378)
Q Consensus        22 ~~~~~i~~~d~~~-~~--~~~~l~~~~~~v~~~~~sp~g~~l~~~~-~dg~i~iwd~~--~~~--~~~~~~~~~~~~l~~   93 (378)
                      ..++.|.+||+.+ +.  .+..+.. .+.+..++++|++++|++++ .++.|.+|+.+  +..  +........+..+.|
T Consensus         9 ~~~~~I~~~~~~~~g~l~~~~~~~~-~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~   87 (330)
T PRK11028          9 PESQQIHVWNLNHEGALTLLQVVDV-PGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHIST   87 (330)
T ss_pred             CCCCCEEEEEECCCCceeeeeEEec-CCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEEEE
Confidence            4467888999864 32  3344443 36788999999999987765 47889999964  222  122222223467777


Q ss_pred             -----EEEE-EeCCCeEEEEEcCC-Cc---EEEEEecCCCCeeEEEEcCCCCEEEEEcCC-Ce-----eee---------
Q 046394           94 -----LLAS-INKLGQLRYQNVTM-GE---IVGNFWTGLGRTDVIRVNPFNGVVSLGHSG-GT-----MLC---------  148 (378)
Q Consensus        94 -----~l~s-~~~d~~i~iwd~~~-~~---~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-~~-----~~~---------  148 (378)
                           ++++ ...++.|.+|++.+ +.   .+..+. +...+.+++++|+++++++++.. +.     +..         
T Consensus        88 ~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~  166 (330)
T PRK11028         88 DHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEP  166 (330)
T ss_pred             CCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCC
Confidence                 4444 44589999999964 32   233332 23456788999999988766654 33     111         


Q ss_pred             ------cCCCEEEEEEecCCCEEEEEEC-CCeEEEEEcCC--c--eeeeee---cC------CceEEEEecCCCccccCC
Q 046394          149 ------HQGPVSALAFHPNGHLMATSGK-DCKIKIWDLRK--Y--EVLQTL---PG------HAKTLDFSRKDSGDFSGS  208 (378)
Q Consensus       149 ------h~~~v~~~~~sp~g~~l~t~~~-d~~i~iwd~~~--~--~~~~~~---~~------~i~~~~~sp~g~~~~~~~  208 (378)
                            .......++|+|+|++++++.. +++|.+||+..  +  +.+..+   +.      ....+.|+|+|++.+...
T Consensus       167 ~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~  246 (330)
T PRK11028        167 AEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACD  246 (330)
T ss_pred             CceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEec
Confidence                  0112357899999999877765 89999999973  3  233333   11      223588999998633322


Q ss_pred             CCCceEEEeec-------------cCCcceeeeEEcCCCCeEEEecC-CCeEEEE
Q 046394          209 HNYNRYMGYSM-------------VKGYQIGKVSFRPYEDVLGIGHS-MGVSGIL  249 (378)
Q Consensus       209 ~~~~~~~~~~~-------------~~~~~v~~~~~sp~g~~l~~~~~-~g~~~~~  249 (378)
                      .....+..+..             ..+.....+.|+|+|++|++++. ++.+.+|
T Consensus       247 ~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~  301 (330)
T PRK11028        247 RTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVY  301 (330)
T ss_pred             CCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEE
Confidence            21122211110             01223567899999988876654 4544444

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.59  E-value=4.5e-15  Score=122.77  Aligned_cols=197  Identities=15%  Similarity=0.198  Sum_probs=138.0

Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEe-eccCCCeeEEEE------EEEEEeCCCeEEEEEcCCCcEEEEEecCC
Q 046394           50 TLDFTSSGRYMAAAGCKGYPYFYNRDGTELHC-SKEHGEVLKLQF------LLASINKLGQLRYQNVTMGEIVGNFWTGL  122 (378)
Q Consensus        50 ~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~~l~~------~l~s~~~d~~i~iwd~~~~~~~~~~~~~~  122 (378)
                      -++|||+|+++|+++.. .+.|-|...-.++. +..-..+..+.|      .+.....++.|.+|++...+-...+....
T Consensus        13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~   91 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQ   91 (447)
T ss_pred             ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCC
Confidence            46899999999999766 67777754433322 222223345555      66777889999999999988888888888


Q ss_pred             CCeeEEEEcCCCCEEEEEcCCCe--------------eeecCCCEEEEEEecCCCEEEEEECCCe---EEEEEcCCceee
Q 046394          123 GRTDVIRVNPFNGVVSLGHSGGT--------------MLCHQGPVSALAFHPNGHLMATSGKDCK---IKIWDLRKYEVL  185 (378)
Q Consensus       123 ~~v~~~~~s~~~~~l~~~~~d~~--------------~~~h~~~v~~~~~sp~g~~l~t~~~d~~---i~iwd~~~~~~~  185 (378)
                      ..+..++|||||+.|+..+.-..              +...+..+..++|+|||++.+.++.-..   +.|..-....++
T Consensus        92 agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll  171 (447)
T KOG4497|consen   92 AGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILL  171 (447)
T ss_pred             CcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHH
Confidence            99999999999976665554332              2222345688999999999988885432   222222233344


Q ss_pred             eee---cCCceEEEEecCCCc-cccCCCCCceEEEeeccCCcceeeeEEcCCCCeEEEecCCCeEEEE
Q 046394          186 QTL---PGHAKTLDFSRKDSG-DFSGSHNYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGIL  249 (378)
Q Consensus       186 ~~~---~~~i~~~~~sp~g~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~  249 (378)
                      ..+   .-..+.+.|||||.. .+|+..-.-.+..+.  -+-.+..+.|+|.+++|++|+.|+.++++
T Consensus       172 ~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe--~~lG~k~v~wsP~~qflavGsyD~~lrvl  237 (447)
T KOG4497|consen  172 KEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYE--RGLGLKFVEWSPCNQFLAVGSYDQMLRVL  237 (447)
T ss_pred             HhcCCCcccccCceECCCCcEEEEecchhhheeeeee--eccceeEEEeccccceEEeeccchhhhhh
Confidence            444   345688999999986 667754333333332  24568999999999999999999877654

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.59  E-value=1.5e-12  Score=109.54  Aligned_cols=193  Identities=17%  Similarity=0.164  Sum_probs=132.9

Q ss_pred             eeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCC--cEEEEeC-CCCeEEeeccCCCeeEEEE---EEEEEeC
Q 046394           27 AREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKG--YPYFYNR-DGTELHCSKEHGEVLKLQF---LLASINK  100 (378)
Q Consensus        27 i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg--~i~iwd~-~~~~~~~~~~~~~~~~l~~---~l~s~~~  100 (378)
                      -+++......+.+........|.-+-||.  .++|..+.+.  .+++++. .+..+..+.-...+.++.+   .|+++-.
T Consensus        28 yk~~~~~~~~k~~~~~~~~~~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~fpt~IL~VrmNr~RLvV~Le  105 (391)
T KOG2110|consen   28 YKIFSCSPFEKCFSKDTEGVSIVEMLFSS--SLVAIVSIKQPRKLKVVHFKKKTTICEIFFPTSILAVRMNRKRLVVCLE  105 (391)
T ss_pred             eeEEecCchHHhhcccCCCeEEEEeeccc--ceeEEEecCCCceEEEEEcccCceEEEEecCCceEEEEEccceEEEEEc
Confidence            34444444444333333334566677774  4666665543  4888884 4555666666666666666   6666555


Q ss_pred             CCeEEEEEcCCCcEEEEEecC---CCCeeEEEEcCCCCEEEEEcCCCe----------------eeecCCCEEEEEEecC
Q 046394          101 LGQLRYQNVTMGEIVGNFWTG---LGRTDVIRVNPFNGVVSLGHSGGT----------------MLCHQGPVSALAFHPN  161 (378)
Q Consensus       101 d~~i~iwd~~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~~~~~d~~----------------~~~h~~~v~~~~~sp~  161 (378)
                      +. |+|||+.+-+.+.++...   ...+.++.+++.+.+++.-+....                +..|.+++-+++|+|+
T Consensus       106 e~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~  184 (391)
T KOG2110|consen  106 ES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPD  184 (391)
T ss_pred             cc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCC
Confidence            44 999999999988887654   334555666666668876433222                7899999999999999


Q ss_pred             CCEEEEEECCCe-EEEEEcCCceeeeeecCCceEEEEecCCCccccCCCCCceEEEeeccCCcceeeeEEcCCCCeEEEe
Q 046394          162 GHLMATSGKDCK-IKIWDLRKYEVLQTLPGHAKTLDFSRKDSGDFSGSHNYNRYMGYSMVKGYQIGKVSFRPYEDVLGIG  240 (378)
Q Consensus       162 g~~l~t~~~d~~-i~iwd~~~~~~~~~~~~~i~~~~~sp~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~  240 (378)
                      |.+|||+|..|+ ||||.+.+|+.+..|....                     +       ...|.+++|+|++++|++.
T Consensus       185 G~llATASeKGTVIRVf~v~~G~kl~eFRRG~---------------------~-------~~~IySL~Fs~ds~~L~~s  236 (391)
T KOG2110|consen  185 GTLLATASEKGTVIRVFSVPEGQKLYEFRRGT---------------------Y-------PVSIYSLSFSPDSQFLAAS  236 (391)
T ss_pred             CCEEEEeccCceEEEEEEcCCccEeeeeeCCc---------------------e-------eeEEEEEEECCCCCeEEEe
Confidence            999999999995 7899999988877761110                     1       1237788888888888888


Q ss_pred             cCCCeEEEEE
Q 046394          241 HSMGVSGILI  250 (378)
Q Consensus       241 ~~~g~~~~~~  250 (378)
                      ++.+.+++|-
T Consensus       237 S~TeTVHiFK  246 (391)
T KOG2110|consen  237 SNTETVHIFK  246 (391)
T ss_pred             cCCCeEEEEE
Confidence            8888887773

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.58  E-value=6.3e-13  Score=123.30  Aligned_cols=236  Identities=14%  Similarity=0.107  Sum_probs=163.2

Q ss_pred             ceeeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCC---CEEEEEeCCCcEEEEe-CCCCeEEeeccCCCeeE
Q 046394           15 VEKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSG---RYMAAAGCKGYPYFYN-RDGTELHCSKEHGEVLK   90 (378)
Q Consensus        15 ~~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g---~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~~~   90 (378)
                      ..+++.+.....|.||...|++++..+..|...+.++.+.|..   .++++++.+|.|++|| .++..+.++..+..+.+
T Consensus        27 D~k~l~~~~~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~  106 (792)
T KOG1963|consen   27 DAKFLFLCTGNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHA  106 (792)
T ss_pred             CCcEEEEeeCCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeE
Confidence            5677888889999999999999999999999999999998855   4678999999999999 45544444433222211


Q ss_pred             EEE---------------------------------------------------------------EEEEEeCCCeEEEE
Q 046394           91 LQF---------------------------------------------------------------LLASINKLGQLRYQ  107 (378)
Q Consensus        91 l~~---------------------------------------------------------------~l~s~~~d~~i~iw  107 (378)
                      +.+                                                               .+...-.+..+.+|
T Consensus       107 ~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~~~~~~~~  186 (792)
T KOG1963|consen  107 LVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVHMCKIHIY  186 (792)
T ss_pred             EEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEEeeeEEEE
Confidence            100                                                               11111223445566


Q ss_pred             EcCCCcEEE-E---EecCCCCeeEEEEcCCCCEEEEEcCCCe------------------eeecCCCEEEEEEecCCCEE
Q 046394          108 NVTMGEIVG-N---FWTGLGRTDVIRVNPFNGVVSLGHSGGT------------------MLCHQGPVSALAFHPNGHLM  165 (378)
Q Consensus       108 d~~~~~~~~-~---~~~~~~~v~~~~~s~~~~~l~~~~~d~~------------------~~~h~~~v~~~~~sp~g~~l  165 (378)
                      +........ .   -..|.-.+++.++||.++++|+|..+|.                  +..|...|++++|+++|.+|
T Consensus       187 ~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~L  266 (792)
T KOG1963|consen  187 FVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYL  266 (792)
T ss_pred             EecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceE
Confidence            665533100 0   0124445789999999999999999988                  67899999999999999999


Q ss_pred             EEEECCCeEEEEEcCCcee--eeeecCCceEEEEecCCCccccCCCCCceEE----------Eeec---c-------CCc
Q 046394          166 ATSGKDCKIKIWDLRKYEV--LQTLPGHAKTLDFSRKDSGDFSGSHNYNRYM----------GYSM---V-------KGY  223 (378)
Q Consensus       166 ~t~~~d~~i~iwd~~~~~~--~~~~~~~i~~~~~sp~g~~~~~~~~~~~~~~----------~~~~---~-------~~~  223 (378)
                      ++||..+.+.+|.+.+++.  +-.+.++|..+.+|||+....-...+.+...          ...+   .       ...
T Consensus       267 lSGG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~  346 (792)
T KOG1963|consen  267 LSGGREGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQS  346 (792)
T ss_pred             eecccceEEEEEeecCCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccc
Confidence            9999999999999998772  2222689999999999985222111111110          0000   0       122


Q ss_pred             ceeeeEEcCCCCeEEEecCCCeEEEEE
Q 046394          224 QIGKVSFRPYEDVLGIGHSMGVSGILI  250 (378)
Q Consensus       224 ~v~~~~~sp~g~~l~~~~~~g~~~~~~  250 (378)
                      -.+.++++|.-..++..+..|.++++.
T Consensus       347 l~t~~~idpr~~~~vln~~~g~vQ~yd  373 (792)
T KOG1963|consen  347 LTTGVSIDPRTNSLVLNGHPGHVQFYD  373 (792)
T ss_pred             cceeEEEcCCCCceeecCCCceEEEEe
Confidence            346677888666777777777666654

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.58  E-value=1.5e-12  Score=109.54  Aligned_cols=227  Identities=14%  Similarity=0.104  Sum_probs=145.5

Q ss_pred             EEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeC-CCCeEEeeccC-CCe---eEEEE
Q 046394           19 WRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNR-DGTELHCSKEH-GEV---LKLQF   93 (378)
Q Consensus        19 ~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~-~~~~~~~~~~~-~~~---~~l~~   93 (378)
                      +...+...++++++.....+-.+... ..|.++.++.  +.|+++-.+ .|+|||+ +...++++... ..+   .++.+
T Consensus        62 V~~~qpr~Lkv~~~Kk~~~ICe~~fp-t~IL~VrmNr--~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~  137 (391)
T KOG2110|consen   62 VSIKQPRKLKVVHFKKKTTICEIFFP-TSILAVRMNR--KRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSP  137 (391)
T ss_pred             EecCCCceEEEEEcccCceEEEEecC-CceEEEEEcc--ceEEEEEcc-cEEEEecccceeehhhhccCCCccceEeecc
Confidence            33344455666666666555555543 6788888864  356666554 5999994 55667776554 222   33333


Q ss_pred             -----EEEE--EeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe------------eee-----c
Q 046394           94 -----LLAS--INKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT------------MLC-----H  149 (378)
Q Consensus        94 -----~l~s--~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~------------~~~-----h  149 (378)
                           +++-  ....|.|.+||+.+-+++..+..|.+.+.+++|+++|.+||+++..|+            +..     .
T Consensus       138 n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~  217 (391)
T KOG2110|consen  138 NNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTY  217 (391)
T ss_pred             CCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCce
Confidence                 4443  334689999999999999999999999999999999999999999999            111     1


Q ss_pred             CCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee---------cC--CceEEEEecCCCccccCCCCCceEEEee
Q 046394          150 QGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL---------PG--HAKTLDFSRKDSGDFSGSHNYNRYMGYS  218 (378)
Q Consensus       150 ~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~---------~~--~i~~~~~sp~g~~~~~~~~~~~~~~~~~  218 (378)
                      ...|.+++|+|++.+|++.|..++|.||-+.... ....         ..  ....+++-|..-..+|+....-......
T Consensus       218 ~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~-~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~  296 (391)
T KOG2110|consen  218 PVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVS-NNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFATAKLP  296 (391)
T ss_pred             eeEEEEEEECCCCCeEEEecCCCeEEEEEecccc-cCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhccceeEEEcc
Confidence            2457899999999999999999999999987533 1111         00  1111223343333444433322233332


Q ss_pred             ccCCcceeeeEEcCCCCeEEEecCCCeEEEEE
Q 046394          219 MVKGYQIGKVSFRPYEDVLGIGHSMGVSGILI  250 (378)
Q Consensus       219 ~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~  250 (378)
                      ......+..+.=.+....+.+++.||....+-
T Consensus       297 ~s~~~~~~~l~~~~~~~~v~vas~dG~~y~y~  328 (391)
T KOG2110|consen  297 ESGRKNICSLSSIQKIPRVLVASYDGHLYSYR  328 (391)
T ss_pred             CCCccceEEeeccCCCCEEEEEEcCCeEEEEE
Confidence            20111233333335778888888888665553

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.58  E-value=1.5e-13  Score=120.74  Aligned_cols=185  Identities=15%  Similarity=0.196  Sum_probs=100.8

Q ss_pred             ceeeEEEeccceeeeeecccceeeE-Ee---ecCCCCceEEEE-----cCCCCEEEEEeCCCcEEEEeCCCCeEEee---
Q 046394           15 VEKTWRIKQEAIAREVDILSSRNQY-DI---MLPELGPYTLDF-----TSSGRYMAAAGCKGYPYFYNRDGTELHCS---   82 (378)
Q Consensus        15 ~~~~~~~~~~~~i~~~d~~~~~~~~-~l---~~~~~~v~~~~~-----sp~g~~l~~~~~dg~i~iwd~~~~~~~~~---   82 (378)
                      ....+.+.....+.+|+...+.... .+   ......+.|-+|     .|.+--|+.|-..|.|.+.|.....+..+   
T Consensus       134 ~gd~lcFnvg~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~~~~~sklfne  213 (636)
T KOG2394|consen  134 KGDRLCFNVGRELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPINFEVSKLFNE  213 (636)
T ss_pred             CCCEEEEecCCeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecchhhHHHHhhhh
Confidence            3445666667778888876432211 11   111234455555     35666788898899999999433322221   


Q ss_pred             ---ccCCCeeEEEE------EEEEEeCCCeEEEEEcCC--------------C--------------cEEEEEecCCCCe
Q 046394           83 ---KEHGEVLKLQF------LLASINKLGQLRYQNVTM--------------G--------------EIVGNFWTGLGRT  125 (378)
Q Consensus        83 ---~~~~~~~~l~~------~l~s~~~d~~i~iwd~~~--------------~--------------~~~~~~~~~~~~v  125 (378)
                         .....++++.|      .|+.+-.+|.+.+||...              +              .++..+....+.|
T Consensus       214 ~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~i  293 (636)
T KOG2394|consen  214 ERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSI  293 (636)
T ss_pred             cccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccc
Confidence               11234588999      777788889999997621              0              0111111122345


Q ss_pred             eEEEEcCCCCEEEEEcCCCe---eeec-----------CCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee---
Q 046394          126 DVIRVNPFNGVVSLGHSGGT---MLCH-----------QGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL---  188 (378)
Q Consensus       126 ~~~~~s~~~~~l~~~~~d~~---~~~h-----------~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~---  188 (378)
                      +..+|+|||++||+.+.||.   +.-+           -+...|++|||||+||++|+.|..|.||.+...+.+..-   
T Consensus       294 n~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGH  373 (636)
T KOG2394|consen  294 NEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGH  373 (636)
T ss_pred             cceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEecccc
Confidence            55555555555555555555   1111           134555555555555555555555555555555554444   


Q ss_pred             cCCceEEEEec
Q 046394          189 PGHAKTLDFSR  199 (378)
Q Consensus       189 ~~~i~~~~~sp  199 (378)
                      .+.|+.|+|.|
T Consensus       374 kSWVs~VaFDp  384 (636)
T KOG2394|consen  374 KSWVSVVAFDP  384 (636)
T ss_pred             ccceeeEeecc
Confidence            24555555554

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.57  E-value=3e-13  Score=127.56  Aligned_cols=230  Identities=13%  Similarity=0.160  Sum_probs=157.3

Q ss_pred             EeccceeeeeecccceeeEEeecCC---CCceEEEEcC--CCCEEEEEeCCCcEEEEe--CCC----CeEEe---eccC-
Q 046394           21 IKQEAIAREVDILSSRNQYDIMLPE---LGPYTLDFTS--SGRYMAAAGCKGYPYFYN--RDG----TELHC---SKEH-   85 (378)
Q Consensus        21 ~~~~~~i~~~d~~~~~~~~~l~~~~---~~v~~~~~sp--~g~~l~~~~~dg~i~iwd--~~~----~~~~~---~~~~-   85 (378)
                      ......|.+||.+.++....+..+.   ..|+.+.+-.  |..++++|+.||.|+||+  .++    +.+..   +.++ 
T Consensus      1082 ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~ 1161 (1387)
T KOG1517|consen 1082 ADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQL 1161 (1387)
T ss_pred             cCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccC
Confidence            3346788899999888876666543   4578888865  345899999999999999  232    11221   2222 


Q ss_pred             ---CCe-eEEEE-----EEEEEeCCCeEEEEEcCCCcEEEEEecCC-CCeeEEEEc-CCCCEEEEEcCCCe---------
Q 046394           86 ---GEV-LKLQF-----LLASINKLGQLRYQNVTMGEIVGNFWTGL-GRTDVIRVN-PFNGVVSLGHSGGT---------  145 (378)
Q Consensus        86 ---~~~-~~l~~-----~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~v~~~~~s-~~~~~l~~~~~d~~---------  145 (378)
                         .+. .-++|     .|+++|.-..|+|||....+.+..+.... ..++++.-+ +.|+.|++|..||.         
T Consensus      1162 ~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a 1241 (1387)
T KOG1517|consen 1162 PGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMA 1241 (1387)
T ss_pred             ccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccC
Confidence               122 33455     67777778899999999888888776543 446666544 34689999999998         


Q ss_pred             --------eeecCCC--EEEEEEecCCCE-EEEEECCCeEEEEEcCCceeeeee----c---C-CceEEEEecCCCc---
Q 046394          146 --------MLCHQGP--VSALAFHPNGHL-MATSGKDCKIKIWDLRKYEVLQTL----P---G-HAKTLDFSRKDSG---  203 (378)
Q Consensus       146 --------~~~h~~~--v~~~~~sp~g~~-l~t~~~d~~i~iwd~~~~~~~~~~----~---~-~i~~~~~sp~g~~---  203 (378)
                              ...|+..  |..+.+.+.|-- |++|+.||.|++||++.......+    +   + ..+++..+++..+   
T Consensus      1242 ~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAs 1321 (1387)
T KOG1517|consen 1242 PPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIAS 1321 (1387)
T ss_pred             CccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeee
Confidence                    5567777  999999997755 999999999999999984222211    1   2 3788888776654   


Q ss_pred             ------cccCCCCCc--eE---EEeeccCCcceeeeEEcCCCCeEEEecCCCeEEEEE
Q 046394          204 ------DFSGSHNYN--RY---MGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILI  250 (378)
Q Consensus       204 ------~~~~~~~~~--~~---~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~  250 (378)
                            .+|+.....  .+   ..+-+.....+.+++|+|.--.||+|+.|.++.++-
T Consensus      1322 Gs~q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs 1379 (1387)
T KOG1517|consen 1322 GSAQLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYS 1379 (1387)
T ss_pred             cCcceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEee
Confidence                  333321111  01   111111334678999999998999998888877764

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.57  E-value=7.8e-13  Score=117.19  Aligned_cols=206  Identities=19%  Similarity=0.250  Sum_probs=157.5

Q ss_pred             CCCCceEEEEcCCCCEE-EEEeCCCcEEEEeCCCCeEE-----------------------------eeccCC--C----
Q 046394           44 PELGPYTLDFTSSGRYM-AAAGCKGYPYFYNRDGTELH-----------------------------CSKEHG--E----   87 (378)
Q Consensus        44 ~~~~v~~~~~sp~g~~l-~~~~~dg~i~iwd~~~~~~~-----------------------------~~~~~~--~----   87 (378)
                      +....+.|..+|||+|+ |+|.....|++||+..-.+.                             .+..|.  +    
T Consensus        50 ~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy~  129 (703)
T KOG2321|consen   50 MPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHYR  129 (703)
T ss_pred             CccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeeee
Confidence            44667899999999975 57777889999995321110                             011111  0    


Q ss_pred             ------eeEEEE-----EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe-----------
Q 046394           88 ------VLKLQF-----LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT-----------  145 (378)
Q Consensus        88 ------~~~l~~-----~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~-----------  145 (378)
                            ..++++     -|+.++....|+-+++..|..+..|....+.++++..++-..+|++|+.+|.           
T Consensus       130 ~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksr  209 (703)
T KOG2321|consen  130 TRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSR  209 (703)
T ss_pred             eecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhh
Confidence                  022333     3444555567888999999999999888899999999999999999999998           


Q ss_pred             ---------eeecCCC-----EEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee----cCCceEEEEecCCC-----
Q 046394          146 ---------MLCHQGP-----VSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL----PGHAKTLDFSRKDS-----  202 (378)
Q Consensus       146 ---------~~~h~~~-----v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~----~~~i~~~~~sp~g~-----  202 (378)
                               +..|.+.     |+++.|+.+|-.+++|+.+|.|.|||+++.+++..-    ..+|..+.|-+.+.     
T Consensus       210 v~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~  289 (703)
T KOG2321|consen  210 VGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVV  289 (703)
T ss_pred             heeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEE
Confidence                     2334444     999999999999999999999999999998887665    36889999977633     


Q ss_pred             ------ccccCCCCCceEEEeeccCCcceeeeEEcCCCCeEEEecCCCeEE-EEEc
Q 046394          203 ------GDFSGSHNYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSG-ILIP  251 (378)
Q Consensus       203 ------~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~-~~~~  251 (378)
                            ..+|+..++.++.....  ...++++++-|++-++.++.+++-+. ++++
T Consensus       290 S~Dk~~~kiWd~~~Gk~~asiEp--t~~lND~C~~p~sGm~f~Ane~~~m~~yyiP  343 (703)
T KOG2321|consen  290 SMDKRILKIWDECTGKPMASIEP--TSDLNDFCFVPGSGMFFTANESSKMHTYYIP  343 (703)
T ss_pred             ecchHHhhhcccccCCceeeccc--cCCcCceeeecCCceEEEecCCCcceeEEcc
Confidence                  27899999988877764  55699999999999999999888664 4444

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.56  E-value=4.2e-13  Score=124.00  Aligned_cols=179  Identities=13%  Similarity=0.122  Sum_probs=122.0

Q ss_pred             ceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeC---CCcEEEEeCCCCeEEeeccCCCe-eEEEE------E
Q 046394           25 AIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGC---KGYPYFYNRDGTELHCSKEHGEV-LKLQF------L   94 (378)
Q Consensus        25 ~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~-~~l~~------~   94 (378)
                      ..|.+||.. +.....+..+...+.+.+|+|||+.|+.++.   ...|++||..+.....+....+. .++.|      +
T Consensus       184 ~~l~i~D~~-g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l  262 (433)
T PRK04922        184 YALQVADSD-GYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRL  262 (433)
T ss_pred             EEEEEECCC-CCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEE
Confidence            357889875 4445567677778999999999999988764   34699999765554455444444 56777      4


Q ss_pred             EEEEeCCC--eEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCC-Ce---------------eeecCCCEEEE
Q 046394           95 LASINKLG--QLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSG-GT---------------MLCHQGPVSAL  156 (378)
Q Consensus        95 l~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-~~---------------~~~h~~~v~~~  156 (378)
                      +++.+.++  .|++||+.+++.. .+..+......++|+|||+.|+.++.. +.               +..+......+
T Consensus       263 ~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~  341 (433)
T PRK04922        263 ALTLSRDGNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARA  341 (433)
T ss_pred             EEEEeCCCCceEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCE
Confidence            44555554  6999999888754 344454556678999999988776643 22               11122334468


Q ss_pred             EEecCCCEEEEEECCC---eEEEEEcCCceeeeee--cCCceEEEEecCCCcccc
Q 046394          157 AFHPNGHLMATSGKDC---KIKIWDLRKYEVLQTL--PGHAKTLDFSRKDSGDFS  206 (378)
Q Consensus       157 ~~sp~g~~l~t~~~d~---~i~iwd~~~~~~~~~~--~~~i~~~~~sp~g~~~~~  206 (378)
                      +|+|+|++|+..+.++   .|.+||+.++... .+  ......+.|+|||...++
T Consensus       342 ~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~~~~~~~p~~spdG~~i~~  395 (433)
T PRK04922        342 SVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTPGSLDESPSFAPNGSMVLY  395 (433)
T ss_pred             EECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCCCCCCCCceECCCCCEEEE
Confidence            9999999988765443   6999999877654 33  234556788888876544

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.56  E-value=2.9e-12  Score=105.91  Aligned_cols=202  Identities=14%  Similarity=0.184  Sum_probs=132.4

Q ss_pred             eEEEeccceeeeeecccceeeEEeecCCCCc--eEEEEcCCCCEEE-EEeCC------CcEEEEe-CCCCeEEeeccCCC
Q 046394           18 TWRIKQEAIAREVDILSSRNQYDIMLPELGP--YTLDFTSSGRYMA-AAGCK------GYPYFYN-RDGTELHCSKEHGE   87 (378)
Q Consensus        18 ~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v--~~~~~sp~g~~l~-~~~~d------g~i~iwd-~~~~~~~~~~~~~~   87 (378)
                      .+.+..+.-.++|+....++......+.+++  .-|-|-  .++|| +||.+      ..|.||| ....++..+.-...
T Consensus        19 cFava~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR--~N~laLVGGg~~pky~pNkviIWDD~k~~~i~el~f~~~   96 (346)
T KOG2111|consen   19 CFAVATDTGFRIYNCDPFKESASRQFIDGGFKIVEMLFR--SNYLALVGGGSRPKYPPNKVIIWDDLKERCIIELSFNSE   96 (346)
T ss_pred             eEEEEecCceEEEecCchhhhhhhccccCchhhhhHhhh--hceEEEecCCCCCCCCCceEEEEecccCcEEEEEEeccc
Confidence            3444444555666665554444444443432  233332  34554 44443      3799999 77888888887778


Q ss_pred             eeEEEE---EEEEEeCCCeEEEEEcC-CCcEEEEEecCCCCeeEEEEcC--CCCEEEEEcC-CCe---------------
Q 046394           88 VLKLQF---LLASINKLGQLRYQNVT-MGEIVGNFWTGLGRTDVIRVNP--FNGVVSLGHS-GGT---------------  145 (378)
Q Consensus        88 ~~~l~~---~l~s~~~d~~i~iwd~~-~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~-d~~---------------  145 (378)
                      +.++.+   .+++. ..+.|+||... +.+.++.+.....+---++..|  ...+||.-+. -|.               
T Consensus        97 I~~V~l~r~riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~  175 (346)
T KOG2111|consen   97 IKAVKLRRDRIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPS  175 (346)
T ss_pred             eeeEEEcCCeEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCce
Confidence            888877   44444 45789999987 4555565554332222223333  3334443222 222               


Q ss_pred             -eeecCCCEEEEEEecCCCEEEEEECCCe-EEEEEcCCceeeeeecCCceEEEEecCCCccccCCCCCceEEEeeccCCc
Q 046394          146 -MLCHQGPVSALAFHPNGHLMATSGKDCK-IKIWDLRKYEVLQTLPGHAKTLDFSRKDSGDFSGSHNYNRYMGYSMVKGY  223 (378)
Q Consensus       146 -~~~h~~~v~~~~~sp~g~~l~t~~~d~~-i~iwd~~~~~~~~~~~~~i~~~~~sp~g~~~~~~~~~~~~~~~~~~~~~~  223 (378)
                       +.+|...|.|++++-+|..+||+|..|+ |||||..+|+++..+.                            +|....
T Consensus       176 ~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~R----------------------------RG~d~A  227 (346)
T KOG2111|consen  176 IINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELR----------------------------RGVDRA  227 (346)
T ss_pred             EEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeee----------------------------cCCchh
Confidence             6789999999999999999999999996 8899999988877651                            111234


Q ss_pred             ceeeeEEcCCCCeEEEecCCCeEEEEE
Q 046394          224 QIGKVSFRPYEDVLGIGHSMGVSGILI  250 (378)
Q Consensus       224 ~v~~~~~sp~g~~l~~~~~~g~~~~~~  250 (378)
                      .|++++|||++.+||++++.|++++|.
T Consensus       228 ~iy~iaFSp~~s~LavsSdKgTlHiF~  254 (346)
T KOG2111|consen  228 DIYCIAFSPNSSWLAVSSDKGTLHIFS  254 (346)
T ss_pred             eEEEEEeCCCccEEEEEcCCCeEEEEE
Confidence            588999999999999999999888875

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.54  E-value=2.1e-13  Score=111.19  Aligned_cols=177  Identities=11%  Similarity=0.164  Sum_probs=122.6

Q ss_pred             cCCCCceEEEEcCCCC-----EEEEEeCCCcEEEEeCC--CCeE---Eeecc-----CCCe-eEEEE------EEEEEeC
Q 046394           43 LPELGPYTLDFTSSGR-----YMAAAGCKGYPYFYNRD--GTEL---HCSKE-----HGEV-LKLQF------LLASINK  100 (378)
Q Consensus        43 ~~~~~v~~~~~sp~g~-----~l~~~~~dg~i~iwd~~--~~~~---~~~~~-----~~~~-~~l~~------~l~s~~~  100 (378)
                      .|..+++.+-|.|+..     +||+++  ..+++|...  ...+   ..+..     +..+ ++..|      ++.+++-
T Consensus        94 d~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi  171 (364)
T KOG0290|consen   94 DHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI  171 (364)
T ss_pred             CCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc
Confidence            4678899999999863     566654  379999953  2221   12222     2234 78888      9999999


Q ss_pred             CCeEEEEEcCCCcE--EEEEecCCCCeeEEEEcCCCCEEEEEcCCCeeeecCCCEEEEEEecCC-CEEEEEECCCeEEEE
Q 046394          101 LGQLRYQNVTMGEI--VGNFWTGLGRTDVIRVNPFNGVVSLGHSGGTMLCHQGPVSALAFHPNG-HLMATSGKDCKIKIW  177 (378)
Q Consensus       101 d~~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~~~~h~~~v~~~~~sp~g-~~l~t~~~d~~i~iw  177 (378)
                      |.+..|||++++..  +.+-                           +.+|...|..++|...+ +.||++|.||+||+|
T Consensus       172 DTTCTiWdie~~~~~~vkTQ---------------------------LIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmF  224 (364)
T KOG0290|consen  172 DTTCTIWDIETGVSGTVKTQ---------------------------LIAHDKEVYDIAFLKGSRDVFASVGADGSVRMF  224 (364)
T ss_pred             cCeEEEEEEeeccccceeeE---------------------------EEecCcceeEEEeccCccceEEEecCCCcEEEE
Confidence            99999999998732  1111                           23788899999998854 469999999999999


Q ss_pred             EcCCceeeeee------cCCceEEEEecCCCc------------cccCC-CCCceEEEeeccCCcceeeeEEcCCCC-eE
Q 046394          178 DLRKYEVLQTL------PGHAKTLDFSRKDSG------------DFSGS-HNYNRYMGYSMVKGYQIGKVSFRPYED-VL  237 (378)
Q Consensus       178 d~~~~~~~~~~------~~~i~~~~~sp~g~~------------~~~~~-~~~~~~~~~~~~~~~~v~~~~~sp~g~-~l  237 (378)
                      |+|..+....+      +.+...++|++....            .+-+. ....++..+++ |...|+.++|.|... .|
T Consensus       225 DLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~-H~a~VNgIaWaPhS~~hi  303 (364)
T KOG0290|consen  225 DLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRN-HQASVNGIAWAPHSSSHI  303 (364)
T ss_pred             EecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhc-CcccccceEecCCCCcee
Confidence            99986554333      246678888876553            11122 23456667777 999999999999864 55


Q ss_pred             EEecCCCeEEEE
Q 046394          238 GIGHSMGVSGIL  249 (378)
Q Consensus       238 ~~~~~~g~~~~~  249 (378)
                      +++++|....+|
T Consensus       304 ctaGDD~qaliW  315 (364)
T KOG0290|consen  304 CTAGDDCQALIW  315 (364)
T ss_pred             eecCCcceEEEE
Confidence            555555544444

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.54  E-value=7.2e-12  Score=104.05  Aligned_cols=228  Identities=11%  Similarity=0.089  Sum_probs=155.2

Q ss_pred             EEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEE-EEEeCCCcEEEEeCCCCeEEeeccCCC-eeEEEE----
Q 046394           20 RIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYM-AAAGCKGYPYFYNRDGTELHCSKEHGE-VLKLQF----   93 (378)
Q Consensus        20 ~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~l~~----   93 (378)
                      .+.-++.|.+|++...+-.-.+.....++.+++|||||+.| .+...+-.|.||.+..+....+..... +..++|    
T Consensus        66 ~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg  145 (447)
T KOG4497|consen   66 VAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDG  145 (447)
T ss_pred             eeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCC
Confidence            34557899999999888888888888999999999999655 456668899999965443322222111 122333    


Q ss_pred             -E------------------------------------EEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCE
Q 046394           94 -L------------------------------------LASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGV  136 (378)
Q Consensus        94 -~------------------------------------l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~  136 (378)
                       +                                    +--+-++..+-+||.--.-.+..+. -.-.+..+.|+|.+++
T Consensus       146 ~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe-~~lG~k~v~wsP~~qf  224 (447)
T KOG4497|consen  146 QFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYE-RGLGLKFVEWSPCNQF  224 (447)
T ss_pred             ceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeee-eccceeEEEeccccce
Confidence             0                                    0011233456677643222222222 1245788999999999


Q ss_pred             EEEEcCCCe-----------------------------------------------------------------------
Q 046394          137 VSLGHSGGT-----------------------------------------------------------------------  145 (378)
Q Consensus       137 l~~~~~d~~-----------------------------------------------------------------------  145 (378)
                      |++|+.|+.                                                                       
T Consensus       225 lavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~  304 (447)
T KOG4497|consen  225 LAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVK  304 (447)
T ss_pred             EEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhccee
Confidence            999999976                                                                       


Q ss_pred             ---------eeecCCCEEEEEEecCCCEEEEEEC--CCeEEEEEcCCceeeeee--cCCceEEEEecCCCc---------
Q 046394          146 ---------MLCHQGPVSALAFHPNGHLMATSGK--DCKIKIWDLRKYEVLQTL--PGHAKTLDFSRKDSG---------  203 (378)
Q Consensus       146 ---------~~~h~~~v~~~~~sp~g~~l~t~~~--d~~i~iwd~~~~~~~~~~--~~~i~~~~~sp~g~~---------  203 (378)
                               +....-.+.-++||+|..+++|-..  -+.+-+||++..++...+  ..+|....|.|....         
T Consensus       305 ~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~piraf~WdP~~prL~vctg~sr  384 (447)
T KOG4497|consen  305 VHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQKHPIRAFEWDPGRPRLVVCTGKSR  384 (447)
T ss_pred             eecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhhhccceeEEEeCCCCceEEEEcCCce
Confidence                     1111234667899999999988764  347999999987776666  688999999996553         


Q ss_pred             -cccCCCCCceEEEeeccCCcceeeeEEcCCCCeEEEecCCCeEEEEE
Q 046394          204 -DFSGSHNYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILI  250 (378)
Q Consensus       204 -~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~  250 (378)
                       .+|.......+.. .. .+..|..+.|..+|..++..+.|.+..-++
T Consensus       385 LY~W~psg~~~V~v-P~-~GF~i~~l~W~~~g~~i~l~~kDafc~a~v  430 (447)
T KOG4497|consen  385 LYFWAPSGPRVVGV-PK-KGFNIQKLQWLQPGEFIVLCGKDAFCVAIV  430 (447)
T ss_pred             EEEEcCCCceEEec-CC-CCceeeeEEecCCCcEEEEEcCCceEEEEe
Confidence             4555444333322 23 567899999999999999999998654443

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.54  E-value=1.3e-13  Score=117.16  Aligned_cols=89  Identities=17%  Similarity=0.394  Sum_probs=79.5

Q ss_pred             EEEEecCCCCeeEEEEcCCCCEEEEEcCCCe------------------------------eeecCCCEEEEEEecCCCE
Q 046394          115 VGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT------------------------------MLCHQGPVSALAFHPNGHL  164 (378)
Q Consensus       115 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~------------------------------~~~h~~~v~~~~~sp~g~~  164 (378)
                      +..+..|...|+++.|+|+|.++|+|+++|.                              +.+|...|..++|+|++++
T Consensus        58 ~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~  137 (434)
T KOG1009|consen   58 LSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNF  137 (434)
T ss_pred             eecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCce
Confidence            4456778999999999999999999999987                              4567788999999999999


Q ss_pred             EEEEECCCeEEEEEcCCceeeeee--c-CCceEEEEecCCCc
Q 046394          165 MATSGKDCKIKIWDLRKYEVLQTL--P-GHAKTLDFSRKDSG  203 (378)
Q Consensus       165 l~t~~~d~~i~iwd~~~~~~~~~~--~-~~i~~~~~sp~g~~  203 (378)
                      +++++.|+++++||+..|.++..+  | ..+..++|.|-+++
T Consensus       138 l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qy  179 (434)
T KOG1009|consen  138 LVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQY  179 (434)
T ss_pred             eeeeeccceEEEEEeccceeEeeccccccccceeecchhhhh
Confidence            999999999999999999999988  3 67889999987765

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.53  E-value=1.2e-12  Score=120.73  Aligned_cols=181  Identities=10%  Similarity=0.070  Sum_probs=119.5

Q ss_pred             ceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCC---CcEEEEeCCCCeEEeeccCCCe-eEEEE------E
Q 046394           25 AIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCK---GYPYFYNRDGTELHCSKEHGEV-LKLQF------L   94 (378)
Q Consensus        25 ~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~-~~l~~------~   94 (378)
                      ..+.++|. ++.....+..+...+.+.+|||||+.|+..+..   ..|++||+.+.....+....+. ....|      +
T Consensus       176 ~~L~~~D~-dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~l  254 (427)
T PRK02889        176 YQLQISDA-DGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTL  254 (427)
T ss_pred             cEEEEECC-CCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEE
Confidence            35667776 455555666777889999999999999887653   3599999765544444433333 66777      4


Q ss_pred             EEEEeCCCeEEEEE--cCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCC-Ce---------------eeecCCCEEEE
Q 046394           95 LASINKLGQLRYQN--VTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSG-GT---------------MLCHQGPVSAL  156 (378)
Q Consensus        95 l~s~~~d~~i~iwd--~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-~~---------------~~~h~~~v~~~  156 (378)
                      +++.+.++...||.  +..+. ...+..+........|+|||+.|+..+.. +.               +..+.......
T Consensus       255 a~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~  333 (427)
T PRK02889        255 AVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSP  333 (427)
T ss_pred             EEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCce
Confidence            44667777766655  44444 44554455556778999999988766543 22               11112223457


Q ss_pred             EEecCCCEEEEEECCC---eEEEEEcCCceeeeee-cCCceEEEEecCCCccccC
Q 046394          157 AFHPNGHLMATSGKDC---KIKIWDLRKYEVLQTL-PGHAKTLDFSRKDSGDFSG  207 (378)
Q Consensus       157 ~~sp~g~~l~t~~~d~---~i~iwd~~~~~~~~~~-~~~i~~~~~sp~g~~~~~~  207 (378)
                      +|+|+|++|+..+.++   .|.+||+.++...... ......+.|+|||...++.
T Consensus       334 ~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~~~~~~p~~spdg~~l~~~  388 (427)
T PRK02889        334 RISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTDTTRDESPSFAPNGRYILYA  388 (427)
T ss_pred             EECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccCCCCccCceECCCCCEEEEE
Confidence            8999999998777654   6999999887653322 3345678899998765543

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.53  E-value=1.5e-13  Score=111.85  Aligned_cols=160  Identities=14%  Similarity=0.155  Sum_probs=115.2

Q ss_pred             eeEEee-cCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCC-Ce-EEeeccC-----CCe-eEEEE------EEEEEeCC
Q 046394           37 NQYDIM-LPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDG-TE-LHCSKEH-----GEV-LKLQF------LLASINKL  101 (378)
Q Consensus        37 ~~~~l~-~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~-~~-~~~~~~~-----~~~-~~l~~------~l~s~~~d  101 (378)
                      .+..|. .+-+.|.|+.|.|++..||+-. |..|.+|++.. .. +..+...     ... ++-.|      ..+....|
T Consensus       114 ~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d  192 (370)
T KOG1007|consen  114 CVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSD  192 (370)
T ss_pred             HhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCC
Confidence            334444 3446899999999999888775 78999999532 22 2333221     111 44445      23333467


Q ss_pred             CeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCeeeecCCCEEEEEEecCCC-EEEEEECCCeEEEEEcC
Q 046394          102 GQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGTMLCHQGPVSALAFHPNGH-LMATSGKDCKIKIWDLR  180 (378)
Q Consensus       102 ~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~~~~h~~~v~~~~~sp~g~-~l~t~~~d~~i~iwd~~  180 (378)
                      +++..||+++......+..                           +|...|..+.|+|+-+ +|+||+.||.|+|||.|
T Consensus       193 ~tl~~~D~RT~~~~~sI~d---------------------------AHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R  245 (370)
T KOG1007|consen  193 STLQFWDLRTMKKNNSIED---------------------------AHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTR  245 (370)
T ss_pred             CcEEEEEccchhhhcchhh---------------------------hhcceeeeccCCCCceEEEEEcCCCccEEEEecc
Confidence            8999999998777666642                           7888899999999765 48899999999999998


Q ss_pred             CceeeeeecCCceEEEEecCCCccccCCCCCceEEEeeccCCcceeeeEEcCCC-CeEEEecCCCeEEEEEcCC
Q 046394          181 KYEVLQTLPGHAKTLDFSRKDSGDFSGSHNYNRYMGYSMVKGYQIGKVSFRPYE-DVLGIGHSMGVSGILIPGS  253 (378)
Q Consensus       181 ~~~~~~~~~~~i~~~~~sp~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g-~~l~~~~~~g~~~~~~~~s  253 (378)
                      +                            +..++..+.+ |.-.|.+|.|+|.- +++.+|+.|..+.++..++
T Consensus       246 ~----------------------------tk~pv~el~~-HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~s  290 (370)
T KOG1007|consen  246 K----------------------------TKFPVQELPG-HSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASS  290 (370)
T ss_pred             C----------------------------CCccccccCC-CceEEEEEEecCccceEEEecCCCceeEEEeccc
Confidence            7                            5566777777 88899999999975 4666777777666665443

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.52  E-value=3.2e-12  Score=117.75  Aligned_cols=179  Identities=12%  Similarity=0.055  Sum_probs=119.6

Q ss_pred             eeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeC---CCcEEEEeCCCCeEEeeccCCC-eeEEEE-----EEE
Q 046394           26 IAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGC---KGYPYFYNRDGTELHCSKEHGE-VLKLQF-----LLA   96 (378)
Q Consensus        26 ~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~-~~~l~~-----~l~   96 (378)
                      .|.++|...... ..+..+...+.+.+|||||+.|+..+.   +..|++|+..+.....+....+ ...+.|     .|+
T Consensus       180 ~l~~~d~dg~~~-~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La  258 (429)
T PRK03629        180 ELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLA  258 (429)
T ss_pred             eEEEEcCCCCCC-EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEE
Confidence            688888765543 445556678899999999998886543   4579999965544444433333 255677     333


Q ss_pred             -EEeCCC--eEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCC-e---------------eeecCCCEEEEE
Q 046394           97 -SINKLG--QLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGG-T---------------MLCHQGPVSALA  157 (378)
Q Consensus        97 -s~~~d~--~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~-~---------------~~~h~~~v~~~~  157 (378)
                       +.+.++  .|.+||+.++.... +..+...+....|+|||+.|+.++..+ .               +..+.....+..
T Consensus       259 ~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~  337 (429)
T PRK03629        259 FALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDAD  337 (429)
T ss_pred             EEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEE
Confidence             334444  58999998887654 334445678899999999887766543 2               222333455788


Q ss_pred             EecCCCEEEEEECC---CeEEEEEcCCceeeeee--cCCceEEEEecCCCccccC
Q 046394          158 FHPNGHLMATSGKD---CKIKIWDLRKYEVLQTL--PGHAKTLDFSRKDSGDFSG  207 (378)
Q Consensus       158 ~sp~g~~l~t~~~d---~~i~iwd~~~~~~~~~~--~~~i~~~~~sp~g~~~~~~  207 (378)
                      |+|+|++|+..+.+   ..|.+||+.++... .+  ........|+|||...++.
T Consensus       338 ~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~~~~~~p~~SpDG~~i~~~  391 (429)
T PRK03629        338 VSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDTFLDETPSIAPNGTMVIYS  391 (429)
T ss_pred             ECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCCCCCCCceECCCCCEEEEE
Confidence            99999998876654   36889999887643 33  2334568899999875554

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.52  E-value=3.2e-11  Score=110.80  Aligned_cols=173  Identities=23%  Similarity=0.397  Sum_probs=142.3

Q ss_pred             cceeeeeeccc-ceeeEEeecCCCCceEEEEcCCCCEEEEEeC-CCcEEEEeCC-CCeEEeeccCCCe-eEEEE------
Q 046394           24 EAIAREVDILS-SRNQYDIMLPELGPYTLDFTSSGRYMAAAGC-KGYPYFYNRD-GTELHCSKEHGEV-LKLQF------   93 (378)
Q Consensus        24 ~~~i~~~d~~~-~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~-dg~i~iwd~~-~~~~~~~~~~~~~-~~l~~------   93 (378)
                      ++.+.+||... ......+..|...|.+++|+|++.++++++. ++.+++|+.. +..+..+.+|... .+++|      
T Consensus       133 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  212 (466)
T COG2319         133 DGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGL  212 (466)
T ss_pred             CccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcce
Confidence            78999999988 7888899999999999999999998888886 9999999954 5777888887765 88888      


Q ss_pred             EEEEEeCCCeEEEEEcCCCcEEE-EEecCCCCeeEEEEcCCCCEEEEEcCCCe---------------eeecCCCEEEEE
Q 046394           94 LLASINKLGQLRYQNVTMGEIVG-NFWTGLGRTDVIRVNPFNGVVSLGHSGGT---------------MLCHQGPVSALA  157 (378)
Q Consensus        94 ~l~s~~~d~~i~iwd~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~d~~---------------~~~h~~~v~~~~  157 (378)
                      .+++++.|+.|.+||...+..+. .+..|.... ...|+|++..+++++.++.               +.+|...|.++.
T Consensus       213 ~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  291 (466)
T COG2319         213 LIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVA  291 (466)
T ss_pred             EEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEE
Confidence            34444899999999998888877 677777665 4489999988888888887               236788999999


Q ss_pred             EecCCCEEEEEECCCeEEEEEcCCceeeeee----cC-CceEEEE
Q 046394          158 FHPNGHLMATSGKDCKIKIWDLRKYEVLQTL----PG-HAKTLDF  197 (378)
Q Consensus       158 ~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~----~~-~i~~~~~  197 (378)
                      |+|++..+++++.|+.+.+||+.+.......    +. .+..+.|
T Consensus       292 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (466)
T COG2319         292 FSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSF  336 (466)
T ss_pred             ECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEE
Confidence            9998888888999999999999876654332    33 4777777

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.52  E-value=1.2e-12  Score=109.91  Aligned_cols=196  Identities=14%  Similarity=0.094  Sum_probs=138.3

Q ss_pred             CceEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEeeccCC--CeeEEEE------EEEEEeCCCeEEEEEcCCC----cE
Q 046394           47 GPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTELHCSKEHG--EVLKLQF------LLASINKLGQLRYQNVTMG----EI  114 (378)
Q Consensus        47 ~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~~l~~------~l~s~~~d~~i~iwd~~~~----~~  114 (378)
                      .+..++|++.-..+|++..|-.|++||.+......++...  .+++++|      .|+.|+..| |.+|.....    ..
T Consensus       100 dlr~~aWhqH~~~fava~nddvVriy~ksst~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r~  178 (445)
T KOG2139|consen  100 DLRGVAWHQHIIAFAVATNDDVVRIYDKSSTCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRN  178 (445)
T ss_pred             ceeeEeechhhhhhhhhccCcEEEEeccCCCCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCcccccccc
Confidence            5678899986667889999999999996666666665544  4599999      677776654 889976421    11


Q ss_pred             ----------EEEEecCCCCeeEEEEcCCCCEEEEEcCCCe--------------ee-ecCCCEEEEEEecCCCEEEEEE
Q 046394          115 ----------VGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT--------------ML-CHQGPVSALAFHPNGHLMATSG  169 (378)
Q Consensus       115 ----------~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~--------------~~-~h~~~v~~~~~sp~g~~l~t~~  169 (378)
                                +...++ ..+|+++.|++||..+++++.+..              +. ...+.+.-+.|||||.+|..++
T Consensus       179 ~~~~s~~~~qvl~~pg-h~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt  257 (445)
T KOG2139|consen  179 IRMMSTHHLQVLQDPG-HNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAAT  257 (445)
T ss_pred             cccccccchhheeCCC-CceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEec
Confidence                      111222 368999999999999999988766              22 3346788899999999999999


Q ss_pred             CCCeEEEEEcC-Cceeeeee--cCCceEEEEecCCCccccCCCCCceEE------------------------Eee----
Q 046394          170 KDCKIKIWDLR-KYEVLQTL--PGHAKTLDFSRKDSGDFSGSHNYNRYM------------------------GYS----  218 (378)
Q Consensus       170 ~d~~i~iwd~~-~~~~~~~~--~~~i~~~~~sp~g~~~~~~~~~~~~~~------------------------~~~----  218 (378)
                      .|+..++|+.. +.....-.  .+.|...+|+|+|.+.++.......+.                        .+.    
T Consensus       258 ~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti  337 (445)
T KOG2139|consen  258 CDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTI  337 (445)
T ss_pred             ccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccchhhhh
Confidence            99999999543 44443333  678999999999996333211111000                        000    


Q ss_pred             -c---cCCcceeeeEEcCCCCeEEEecCCC
Q 046394          219 -M---VKGYQIGKVSFRPYEDVLGIGHSMG  244 (378)
Q Consensus       219 -~---~~~~~v~~~~~sp~g~~l~~~~~~g  244 (378)
                       .   .-...+.+++|.|.|.+||+....+
T Consensus       338 ~ag~~l~cgeaq~lawDpsGeyLav~fKg~  367 (445)
T KOG2139|consen  338 CAGQRLCCGEAQCLAWDPSGEYLAVIFKGQ  367 (445)
T ss_pred             hcCcccccCccceeeECCCCCEEEEEEcCC
Confidence             0   0135678999999999999877665

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.51  E-value=5.6e-13  Score=108.59  Aligned_cols=164  Identities=16%  Similarity=0.149  Sum_probs=125.6

Q ss_pred             ceeeEEEeccceeeeeeccccee-eEEeec-----CCCCceEEEEcC--CCCEEEEEeCCCcEEEEeC-CCCeEEee-cc
Q 046394           15 VEKTWRIKQEAIAREVDILSSRN-QYDIML-----PELGPYTLDFTS--SGRYMAAAGCKGYPYFYNR-DGTELHCS-KE   84 (378)
Q Consensus        15 ~~~~~~~~~~~~i~~~d~~~~~~-~~~l~~-----~~~~v~~~~~sp--~g~~l~~~~~dg~i~iwd~-~~~~~~~~-~~   84 (378)
                      .++.+.+. +..|.+|++..+.. +..+..     |....++-+|||  +|+.+++. .|+++..||. +..+...+ .+
T Consensus       135 s~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~dA  212 (370)
T KOG1007|consen  135 SDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIEDA  212 (370)
T ss_pred             CCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhcchhhh
Confidence            44555555 67788999988876 333322     344567889998  78888877 4789999994 44444333 45


Q ss_pred             CCCe-eEEEE------EEEEEeCCCeEEEEEcCCC-cEEEEEecCCCCeeEEEEcCCC-CEEEEEcCCCe----------
Q 046394           85 HGEV-LKLQF------LLASINKLGQLRYQNVTMG-EIVGNFWTGLGRTDVIRVNPFN-GVVSLGHSGGT----------  145 (378)
Q Consensus        85 ~~~~-~~l~~------~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~d~~----------  145 (378)
                      |... ..+.|      +|++|+.||.|+|||.+.- .++..+.+|...|+++.|+|.- ++|++|+.|..          
T Consensus       213 Hgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svS  292 (370)
T KOG1007|consen  213 HGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVS  292 (370)
T ss_pred             hcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccc
Confidence            6554 88888      9999999999999999864 5789999999999999999965 57777777765          


Q ss_pred             ---------------------------------eeecCCCEEEEEEec-CCCEEEEEECCCeEEEEEcC
Q 046394          146 ---------------------------------MLCHQGPVSALAFHP-NGHLMATSGKDCKIKIWDLR  180 (378)
Q Consensus       146 ---------------------------------~~~h~~~v~~~~~sp-~g~~l~t~~~d~~i~iwd~~  180 (378)
                                                       +..|...|.+++||. +.=.||+-|.||.+.|=.+.
T Consensus       293 SE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~  361 (370)
T KOG1007|consen  293 SEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP  361 (370)
T ss_pred             cccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence                                             667899999999998 55568999999998875543

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.51  E-value=2.9e-12  Score=108.68  Aligned_cols=199  Identities=14%  Similarity=0.150  Sum_probs=141.4

Q ss_pred             CCCCCCCeeecCCceeeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCC-CEEEEEeCCCcEEEEe-CCCCeE
Q 046394            2 LMPSEGGYLEAEGVEKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSG-RYMAAAGCKGYPYFYN-RDGTEL   79 (378)
Q Consensus         2 ~~~~~~~~l~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g-~~l~~~~~dg~i~iwd-~~~~~~   79 (378)
                      |-|.+...|++++.|.++.+|+...-.+. ..-.+.+..|.+|...|-.++|+|.. +.|++++.|..|.+|| -+|..+
T Consensus        89 w~PfnD~vIASgSeD~~v~vW~IPe~~l~-~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeal  167 (472)
T KOG0303|consen   89 WCPFNDCVIASGSEDTKVMVWQIPENGLT-RDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEAL  167 (472)
T ss_pred             cCccCCceeecCCCCceEEEEECCCcccc-cCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCcee
Confidence            45677777777777777766663111110 11125677899999999999999976 6889999999999999 567777


Q ss_pred             EeeccCCCe-eEEEE-----EEEEEeCCCeEEEEEcCCCcEEEEEecCCC-CeeEEEEcCCCCEEEEEcCCCe-------
Q 046394           80 HCSKEHGEV-LKLQF-----LLASINKLGQLRYQNVTMGEIVGNFWTGLG-RTDVIRVNPFNGVVSLGHSGGT-------  145 (378)
Q Consensus        80 ~~~~~~~~~-~~l~~-----~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~d~~-------  145 (378)
                      .++. |.+. .++.|     +++|.+.|..|+|||.++++.+..-..|.+ ....+.|-.+|.++.+|...-.       
T Consensus       168 i~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLw  246 (472)
T KOG0303|consen  168 ITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALW  246 (472)
T ss_pred             eecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeeccccccccceecc
Confidence            7777 8776 99999     999999999999999999999988877764 4556778888884444433222       


Q ss_pred             ------------eeecCCCEEEEEEecCCCEEEEEE-CCCeEEEEEcCCceee----eee--cCCceEEEEecCCC
Q 046394          146 ------------MLCHQGPVSALAFHPNGHLMATSG-KDCKIKIWDLRKYEVL----QTL--PGHAKTLDFSRKDS  202 (378)
Q Consensus       146 ------------~~~h~~~v~~~~~sp~g~~l~t~~-~d~~i~iwd~~~~~~~----~~~--~~~i~~~~~sp~g~  202 (378)
                                  -...+..|.---|.|+.+.+..+| .|+.||.|.+..-.+.    .+|  ..+-..+.|-|..-
T Consensus       247 dp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~epQRG~g~mPKRG  322 (472)
T KOG0303|consen  247 DPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSKEPQRGMGFMPKRG  322 (472)
T ss_pred             CcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEecccccCCcccccccccccc
Confidence                        112234555566788888766555 7999999999876542    233  34556666666543

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.51  E-value=5e-12  Score=117.05  Aligned_cols=176  Identities=11%  Similarity=0.079  Sum_probs=116.3

Q ss_pred             eeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeC---CCcEEEEeCCCCeEEeeccCCCe-eEEEE------EE
Q 046394           26 IAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGC---KGYPYFYNRDGTELHCSKEHGEV-LKLQF------LL   95 (378)
Q Consensus        26 ~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~-~~l~~------~l   95 (378)
                      .|.++|.. +.....+..|...+.+.+|||||+.|+..+.   +..|++||+.+.....+..+.+. ....|      ++
T Consensus       183 ~l~~~d~d-g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la  261 (435)
T PRK05137        183 RLAIMDQD-GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVV  261 (435)
T ss_pred             EEEEECCC-CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEE
Confidence            67788874 4555677788789999999999999887764   46899999765555555555554 66777      44


Q ss_pred             EEEeCCCe--EEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcC-CCe---------------eeecCCCEEEEE
Q 046394           96 ASINKLGQ--LRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHS-GGT---------------MLCHQGPVSALA  157 (378)
Q Consensus        96 ~s~~~d~~--i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d~~---------------~~~h~~~v~~~~  157 (378)
                      ++.+.++.  |++||+.++... .+..+........|+|||+.|+.++. ++.               +..+.+.+....
T Consensus       262 ~~~~~~g~~~Iy~~d~~~~~~~-~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~  340 (435)
T PRK05137        262 MSLSQGGNTDIYTMDLRSGTTT-RLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRYSTPV  340 (435)
T ss_pred             EEEecCCCceEEEEECCCCceE-EccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcccCeE
Confidence            55555554  778898877653 45555556677899999988776654 332               222334456678


Q ss_pred             EecCCCEEEEEECC---CeEEEEEcCCceeeeee--cCCceEEEEecCCCcc
Q 046394          158 FHPNGHLMATSGKD---CKIKIWDLRKYEVLQTL--PGHAKTLDFSRKDSGD  204 (378)
Q Consensus       158 ~sp~g~~l~t~~~d---~~i~iwd~~~~~~~~~~--~~~i~~~~~sp~g~~~  204 (378)
                      |+|+|++|+..+.+   ..|.+||+..+. ...+  ...+..+.|+|||+..
T Consensus       341 ~SpdG~~ia~~~~~~~~~~i~~~d~~~~~-~~~lt~~~~~~~p~~spDG~~i  391 (435)
T PRK05137        341 WSPRGDLIAFTKQGGGQFSIGVMKPDGSG-ERILTSGFLVEGPTWAPNGRVI  391 (435)
T ss_pred             ECCCCCEEEEEEcCCCceEEEEEECCCCc-eEeccCCCCCCCCeECCCCCEE
Confidence            99999998876643   257788875433 2222  2234455566665543

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.50  E-value=1.5e-11  Score=114.25  Aligned_cols=235  Identities=15%  Similarity=0.071  Sum_probs=165.2

Q ss_pred             eeeEEEeccceeeeeecccceeeEE---e-ecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCC-----CeEEeeccCC
Q 046394           16 EKTWRIKQEAIAREVDILSSRNQYD---I-MLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDG-----TELHCSKEHG   86 (378)
Q Consensus        16 ~~~~~~~~~~~i~~~d~~~~~~~~~---l-~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~-----~~~~~~~~~~   86 (378)
                      .....+--...+.+|+..+..+...   . ..|...++|.++||+++++|+|..||.|.+|.--+     ...+.+.-|.
T Consensus       172 ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~  251 (792)
T KOG1963|consen  172 GEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHH  251 (792)
T ss_pred             ceEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecc
Confidence            3344445566778888877552211   1 23666789999999999999999999999998322     2345667676


Q ss_pred             Ce-eEEEE-----EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe---------------
Q 046394           87 EV-LKLQF-----LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT---------------  145 (378)
Q Consensus        87 ~~-~~l~~-----~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~---------------  145 (378)
                      .. ++++|     +|++||..+.+-+|.+.+++ .+-++.-.++|..+.+|||+.+.++...|..               
T Consensus       252 ~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tI  330 (792)
T KOG1963|consen  252 DEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTI  330 (792)
T ss_pred             cccceeEEecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhc
Confidence            54 99999     99999999999999999988 4555666789999999999999988888887               


Q ss_pred             --ee--------ecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee--------c------CCceEEEEecCC
Q 046394          146 --ML--------CHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL--------P------GHAKTLDFSRKD  201 (378)
Q Consensus       146 --~~--------~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~--------~------~~i~~~~~sp~g  201 (378)
                        +.        ...+-.+.++++|.-+.++-.+..|.|.+||+-+...+..+        .      -.+++++.+..|
T Consensus       331 sgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~g  410 (792)
T KOG1963|consen  331 SGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFG  410 (792)
T ss_pred             cCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccc
Confidence              11        12344677899997778899999999999999887766555        1      134666666666


Q ss_pred             Cc--------------------cccCCCC----CceEEEeeccCCcceeeeEEcCCC-C-eEEEecCCCeEEEEEc
Q 046394          202 SG--------------------DFSGSHN----YNRYMGYSMVKGYQIGKVSFRPYE-D-VLGIGHSMGVSGILIP  251 (378)
Q Consensus       202 ~~--------------------~~~~~~~----~~~~~~~~~~~~~~v~~~~~sp~g-~-~l~~~~~~g~~~~~~~  251 (378)
                      .+                    .+|....    ..+......+|+..+....|.+.- . .+++++.||.+.+|+.
T Consensus       411 s~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~  486 (792)
T KOG1963|consen  411 SWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVF  486 (792)
T ss_pred             eEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEE
Confidence            53                    3342211    112222333466666555554433 3 6788888887776654

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.50  E-value=1.7e-11  Score=103.10  Aligned_cols=225  Identities=15%  Similarity=0.164  Sum_probs=145.8

Q ss_pred             EeccceeeeeecccceeeEEeec-CCCCceEEEEcCCC-CEEEEEeCCCcEEEEeCCC-----Ce----------EEeec
Q 046394           21 IKQEAIAREVDILSSRNQYDIML-PELGPYTLDFTSSG-RYMAAAGCKGYPYFYNRDG-----TE----------LHCSK   83 (378)
Q Consensus        21 ~~~~~~i~~~d~~~~~~~~~l~~-~~~~v~~~~~sp~g-~~l~~~~~dg~i~iwd~~~-----~~----------~~~~~   83 (378)
                      ...|..|++||-.. ...-.++. ....|.|++|-|.+ ..|++|+..| |.+|..+.     ..          +....
T Consensus       116 a~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~p  193 (445)
T KOG2139|consen  116 ATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDP  193 (445)
T ss_pred             hccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCcccccccccccccccchhheeCC
Confidence            45678888888766 44444443 34679999999976 5677777664 99998321     11          12234


Q ss_pred             cCCCeeEEEE-----EEEEEeC-CCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe------------
Q 046394           84 EHGEVLKLQF-----LLASINK-LGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT------------  145 (378)
Q Consensus        84 ~~~~~~~l~~-----~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~------------  145 (378)
                      +|..+++|.|     .+++++. |..|.|||..+++.+.......+.++-+.|||||.+|++++-|+.            
T Consensus       194 gh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~  273 (445)
T KOG2139|consen  194 GHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTK  273 (445)
T ss_pred             CCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhccccee
Confidence            5655699999     7777765 678999999999887766566788999999999999999999988            


Q ss_pred             --eeecCCCEEEEEEecCCCEEEEEE-CCCeEEEEEcCC----ce-----------eeeee------------cCCceEE
Q 046394          146 --MLCHQGPVSALAFHPNGHLMATSG-KDCKIKIWDLRK----YE-----------VLQTL------------PGHAKTL  195 (378)
Q Consensus       146 --~~~h~~~v~~~~~sp~g~~l~t~~-~d~~i~iwd~~~----~~-----------~~~~~------------~~~i~~~  195 (378)
                        .....+.|...+|+|.|.+|+.+. ..-  +||.+..    +.           ++..+            .+.+.++
T Consensus       274 erw~lgsgrvqtacWspcGsfLLf~~sgsp--~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~l  351 (445)
T KOG2139|consen  274 ERWILGSGRVQTACWSPCGSFLLFACSGSP--RLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCL  351 (445)
T ss_pred             cceeccCCceeeeeecCCCCEEEEEEcCCc--eEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCcccee
Confidence              122346899999999999865443 333  3333311    00           11111            3578999


Q ss_pred             EEecCCCc------------------cccCCCCCceEEEe-ec-cCCcceeeeEEcC---CCCeEEEecCCCeEEEE
Q 046394          196 DFSRKDSG------------------DFSGSHNYNRYMGY-SM-VKGYQIGKVSFRP---YEDVLGIGHSMGVSGIL  249 (378)
Q Consensus       196 ~~sp~g~~------------------~~~~~~~~~~~~~~-~~-~~~~~v~~~~~sp---~g~~l~~~~~~g~~~~~  249 (378)
                      +|.|.|.+                  ..|+.....++... .+ ..+....-++|+|   +|.+|.++-+.|.+..+
T Consensus       352 awDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~y  428 (445)
T KOG2139|consen  352 AWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRY  428 (445)
T ss_pred             eECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEeccCceEee
Confidence            99999986                  22333222222211 11 0122244566665   46677777777765443

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.50  E-value=4.4e-11  Score=109.89  Aligned_cols=209  Identities=22%  Similarity=0.331  Sum_probs=155.2

Q ss_pred             EeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCCC--eEEeeccCCC--eeEEEE-------EEEE-EeCCCeEEEE
Q 046394           40 DIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGT--ELHCSKEHGE--VLKLQF-------LLAS-INKLGQLRYQ  107 (378)
Q Consensus        40 ~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~--~~~l~~-------~l~s-~~~d~~i~iw  107 (378)
                      .+..|...+.++.+.+.+..++.++.|+.+.+|+....  .+..+..+..  ...+.+       .++. +..|+.+.+|
T Consensus        60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  139 (466)
T COG2319          60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW  139 (466)
T ss_pred             eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence            45678889999999999999999999999999995554  5666665332  222221       3344 3448999999


Q ss_pred             EcCC-CcEEEEEecCCCCeeEEEEcCCCCEEEEEcC-CCe--------------eeecCCCEEEEEEecCCC-EEEEEEC
Q 046394          108 NVTM-GEIVGNFWTGLGRTDVIRVNPFNGVVSLGHS-GGT--------------MLCHQGPVSALAFHPNGH-LMATSGK  170 (378)
Q Consensus       108 d~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d~~--------------~~~h~~~v~~~~~sp~g~-~l~t~~~  170 (378)
                      |... ......+..|...+..++|+|++..+++++. ++.              +.+|...|.+++|+|++. .+++++.
T Consensus       140 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  219 (466)
T COG2319         140 DLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSS  219 (466)
T ss_pred             EecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecC
Confidence            9988 7888888899999999999999998888875 555              556889999999999998 5566699


Q ss_pred             CCeEEEEEcCCceeee-ee--cCCceEEEEecCCCc----------cccCCCCCce-EEEeeccCCcceeeeEEcCCCCe
Q 046394          171 DCKIKIWDLRKYEVLQ-TL--PGHAKTLDFSRKDSG----------DFSGSHNYNR-YMGYSMVKGYQIGKVSFRPYEDV  236 (378)
Q Consensus       171 d~~i~iwd~~~~~~~~-~~--~~~i~~~~~sp~g~~----------~~~~~~~~~~-~~~~~~~~~~~v~~~~~sp~g~~  236 (378)
                      |+.|++||...+..+. .+  +.......|+|++..          .+|+...... +..... |...|.++.|+|++..
T Consensus       220 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~  298 (466)
T COG2319         220 DGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSG-HSSSVLSVAFSPDGKL  298 (466)
T ss_pred             CCcEEEEECCCCcEEeeecCCCCcceeEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEec-CCccEEEEEECCCCCE
Confidence            9999999998877777 45  322222268887732          5555443332 333334 6788999999998887


Q ss_pred             EEEecCCCeEEEE
Q 046394          237 LGIGHSMGVSGIL  249 (378)
Q Consensus       237 l~~~~~~g~~~~~  249 (378)
                      +++++.++.+.+|
T Consensus       299 ~~~~~~d~~~~~~  311 (466)
T COG2319         299 LASGSSDGTVRLW  311 (466)
T ss_pred             EEEeeCCCcEEEE
Confidence            7777777665666

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.47  E-value=7.7e-15  Score=134.84  Aligned_cols=211  Identities=13%  Similarity=0.128  Sum_probs=154.2

Q ss_pred             eeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeeccCCCe-eEEEE-----EEEEEeCCCeEEEEE
Q 046394           36 RNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKEHGEV-LKLQF-----LLASINKLGQLRYQN  108 (378)
Q Consensus        36 ~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~-~~l~~-----~l~s~~~d~~i~iwd  108 (378)
                      +.+..|.+|..+|+|+.|...|.++++|+.|.-|+||. -++.++..+++|.+- +.++.     ++++++.|..|++|-
T Consensus       181 k~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWr  260 (1113)
T KOG0644|consen  181 KNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWR  260 (1113)
T ss_pred             HHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEe
Confidence            34556789999999999999999999999999999999 567888999999986 77777     899999999999999


Q ss_pred             cCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe------------------eeecCCCEEEEEEecCCCEEEEEEC
Q 046394          109 VTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT------------------MLCHQGPVSALAFHPNGHLMATSGK  170 (378)
Q Consensus       109 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~------------------~~~h~~~v~~~~~sp~g~~l~t~~~  170 (378)
                      +.++.++..+.+|.+.|++++|+|-.    +.+.||+                  -.....-+.++.|..++.-++|++.
T Consensus       261 l~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~  336 (1113)
T KOG0644|consen  261 LPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSR  336 (1113)
T ss_pred             cCCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccC
Confidence            99999999999999999999998865    5555665                  0011234566777777778888888


Q ss_pred             CCeEEEEEcCCcee--eee-e---cCCceEEEEec--CCCccccCCCCCceEEEeeccCCcceeeeEEcCCCCeE-EEec
Q 046394          171 DCKIKIWDLRKYEV--LQT-L---PGHAKTLDFSR--KDSGDFSGSHNYNRYMGYSMVKGYQIGKVSFRPYEDVL-GIGH  241 (378)
Q Consensus       171 d~~i~iwd~~~~~~--~~~-~---~~~i~~~~~sp--~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l-~~~~  241 (378)
                      |+.-..|.+.....  ... +   .+...++..+.  +-...+|+...+...+...+ |...+..+.++|-+..+ .+++
T Consensus       337 d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~g-hsd~~yvLd~Hpfn~ri~msag  415 (1113)
T KOG0644|consen  337 DGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMG-HSDEVYVLDVHPFNPRIAMSAG  415 (1113)
T ss_pred             CcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcc-cccceeeeeecCCCcHhhhhcc
Confidence            88888776643111  111 1   11111111111  11125677777777777767 88899999999988654 4667


Q ss_pred             CCCeEEEEEc
Q 046394          242 SMGVSGILIP  251 (378)
Q Consensus       242 ~~g~~~~~~~  251 (378)
                      .||...+|..
T Consensus       416 ~dgst~iwdi  425 (1113)
T KOG0644|consen  416 YDGSTIIWDI  425 (1113)
T ss_pred             CCCceEeeec
Confidence            7776666643

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.46  E-value=4.1e-10  Score=100.94  Aligned_cols=218  Identities=14%  Similarity=0.124  Sum_probs=142.6

Q ss_pred             EeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeeccCCCeeEEEE------
Q 046394           21 IKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKEHGEVLKLQF------   93 (378)
Q Consensus        21 ~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~~~l~~------   93 (378)
                      -..++.+.++|..+.+.+..+.........+.|+|||+++++++.||.|.++| .+++.+..+.....+.++++      
T Consensus        12 ~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~DG~~   91 (369)
T PF02239_consen   12 ERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAVSPDGKY   91 (369)
T ss_dssp             EGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE--TTTE
T ss_pred             ecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEEcCCCCE
Confidence            34579999999999999999987633334688999999999999999999999 56778888887777777777      


Q ss_pred             EEEEEeCCCeEEEEEcCCCcEEEEEecC-------CCCeeEEEEcCCCCEEEEEcCC-Ce---------------eeecC
Q 046394           94 LLASINKLGQLRYQNVTMGEIVGNFWTG-------LGRTDVIRVNPFNGVVSLGHSG-GT---------------MLCHQ  150 (378)
Q Consensus        94 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~-------~~~v~~~~~s~~~~~l~~~~~d-~~---------------~~~h~  150 (378)
                      +++++..++.+.++|..+.+++..+...       ...+..+..+|....+++.-.+ +.               .....
T Consensus        92 ~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g  171 (369)
T PF02239_consen   92 VYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVG  171 (369)
T ss_dssp             EEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--
T ss_pred             EEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeeccc
Confidence            4555567899999999999998887643       2456788888888866655444 33               11223


Q ss_pred             CCEEEEEEecCCCEEEEE-ECCCeEEEEEcCCceeeeee-------cCCc-------eEEEEecCCC------------c
Q 046394          151 GPVSALAFHPNGHLMATS-GKDCKIKIWDLRKYEVLQTL-------PGHA-------KTLDFSRKDS------------G  203 (378)
Q Consensus       151 ~~v~~~~~sp~g~~l~t~-~~d~~i~iwd~~~~~~~~~~-------~~~i-------~~~~~sp~g~------------~  203 (378)
                      .......|+|+++|++.+ ..++.|-++|..+++.+..+       +.+.       ....|...+.            .
T Consensus       172 ~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v  251 (369)
T PF02239_consen  172 RFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPV  251 (369)
T ss_dssp             TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TT
T ss_pred             ccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCcc
Confidence            455678999999987664 46779999999998876655       1111       1223433222            2


Q ss_pred             cccCCCCCceEEEeeccCCcceeeeEEcCCCCeEEEe
Q 046394          204 DFSGSHNYNRYMGYSMVKGYQIGKVSFRPYEDVLGIG  240 (378)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~  240 (378)
                      .+++......+..... .+.+ .-+.-+|++++|.+.
T Consensus       252 ~v~d~~~wkvv~~I~~-~G~g-lFi~thP~s~~vwvd  286 (369)
T PF02239_consen  252 SVHDDYAWKVVKTIPT-QGGG-LFIKTHPDSRYVWVD  286 (369)
T ss_dssp             T-STTTBTSEEEEEE--SSSS---EE--TT-SEEEEE
T ss_pred             ccchhhcCeEEEEEEC-CCCc-ceeecCCCCccEEee
Confidence            4466677778877776 5555 567779999987666

...

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.45  E-value=9.8e-12  Score=105.46  Aligned_cols=163  Identities=16%  Similarity=0.229  Sum_probs=126.0

Q ss_pred             eccceeeeeecccce----eeEEeecCCCCceEEEEcCCCC-EEEEEeCC--CcEEEEeCCCCeEEeeccCC--------
Q 046394           22 KQEAIAREVDILSSR----NQYDIMLPELGPYTLDFTSSGR-YMAAAGCK--GYPYFYNRDGTELHCSKEHG--------   86 (378)
Q Consensus        22 ~~~~~i~~~d~~~~~----~~~~l~~~~~~v~~~~~sp~g~-~l~~~~~d--g~i~iwd~~~~~~~~~~~~~--------   86 (378)
                      -.++.+.+|....+.    +...+..+ .++..|.-+|... .+|+||..  ..+.|||..+. ...+.+..        
T Consensus       122 ~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~-~qiw~aKNvpnD~L~L  199 (412)
T KOG3881|consen  122 VSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQS-KQIWSAKNVPNDRLGL  199 (412)
T ss_pred             ecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccc-eeeeeccCCCCccccc
Confidence            446788888887443    33445554 5677787777655 45668887  78999996543 33332211        


Q ss_pred             --Ce--eEEEE-------EEEEEeCCCeEEEEEcCCC-cEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe---------
Q 046394           87 --EV--LKLQF-------LLASINKLGQLRYQNVTMG-EIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT---------  145 (378)
Q Consensus        87 --~~--~~l~~-------~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~---------  145 (378)
                        .+  +++.|       .||++..-+.+++||.+.+ .++..|.....+++++...|+++++++|...+.         
T Consensus       200 rVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~  279 (412)
T KOG3881|consen  200 RVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGG  279 (412)
T ss_pred             eeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCc
Confidence              11  55666       8999999999999999865 588999888999999999999999999988776         


Q ss_pred             ------eeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeee
Q 046394          146 ------MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQ  186 (378)
Q Consensus       146 ------~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~  186 (378)
                            +.+..+.|.++..+|.+.++++||-|..|||+|+.+.++++
T Consensus       280 kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~  326 (412)
T KOG3881|consen  280 KLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLH  326 (412)
T ss_pred             eeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhh
Confidence                  55667899999999999999999999999999998855443

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.45  E-value=1.8e-12  Score=105.64  Aligned_cols=108  Identities=16%  Similarity=0.280  Sum_probs=81.5

Q ss_pred             cCCCEEEEEEecCCCEEEEEE--CCCeEEEEEcCCceeeeee-cCCceEEEEecCCCc-------------cccCCCCCc
Q 046394          149 HQGPVSALAFHPNGHLMATSG--KDCKIKIWDLRKYEVLQTL-PGHAKTLDFSRKDSG-------------DFSGSHNYN  212 (378)
Q Consensus       149 h~~~v~~~~~sp~g~~l~t~~--~d~~i~iwd~~~~~~~~~~-~~~i~~~~~sp~g~~-------------~~~~~~~~~  212 (378)
                      ..++|.+++|+|+|+.||++.  .++.|.+||++ ++.+..+ ...++.+.|||+|.+             .+|+.....
T Consensus        58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~  136 (194)
T PF08662_consen   58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFGTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKK  136 (194)
T ss_pred             CCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeecCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCE
Confidence            345799999999999876553  56799999996 7777778 678899999999986             456666555


Q ss_pred             eEEEeeccCCcceeeeEEcCCCCeEEEecCCCeEEEEEcCCCCcccccccCCCc
Q 046394          213 RYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILIPGSGEPNFDSWVANPF  266 (378)
Q Consensus       213 ~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~~~s~d~~i~~w~~~~~  266 (378)
                      .+....   ...++.+.|+|||++|+++....      .-..|+.+++|+...-
T Consensus       137 ~i~~~~---~~~~t~~~WsPdGr~~~ta~t~~------r~~~dng~~Iw~~~G~  181 (194)
T PF08662_consen  137 KISTFE---HSDATDVEWSPDGRYLATATTSP------RLRVDNGFKIWSFQGR  181 (194)
T ss_pred             Eeeccc---cCcEEEEEEcCCCCEEEEEEecc------ceeccccEEEEEecCe
Confidence            655543   23478999999999999887653      1235788999986543

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.45  E-value=1.3e-12  Score=111.79  Aligned_cols=163  Identities=18%  Similarity=0.239  Sum_probs=121.6

Q ss_pred             eeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeeccCCC--e-eEEE
Q 046394           17 KTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKEHGE--V-LKLQ   92 (378)
Q Consensus        17 ~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~--~-~~l~   92 (378)
                      ..-.+..|+.+++|+......+.....|...|.++.|||||..|++-+.| ..+||+ .+|..+........  . ..+.
T Consensus       158 ~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cR  236 (398)
T KOG0771|consen  158 KLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCR  236 (398)
T ss_pred             EeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCcccchhhhhce
Confidence            33444568999999988888888888999999999999999999999999 899999 56655544432111  1 3344


Q ss_pred             E----------EEEEEeCCCeEEEEEcCCCcE-----EEEEecCCCCeeEEEEcCCCCEEEEEcCCCe------------
Q 046394           93 F----------LLASINKLGQLRYQNVTMGEI-----VGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT------------  145 (378)
Q Consensus        93 ~----------~l~s~~~d~~i~iwd~~~~~~-----~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~------------  145 (378)
                      |          +++....-+.|..||+....-     ..+.......|++++.+++|++++.|+.+|.            
T Consensus       237 F~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~  316 (398)
T KOG0771|consen  237 FSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRL  316 (398)
T ss_pred             ecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeee
Confidence            4          333334455677766543211     1122223457999999999999999999998            


Q ss_pred             ---eeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcC
Q 046394          146 ---MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLR  180 (378)
Q Consensus       146 ---~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~  180 (378)
                         -..|...|+.+.|+|+.+++++.+.|..+.|.-+.
T Consensus       317 ~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~  354 (398)
T KOG0771|consen  317 QYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLA  354 (398)
T ss_pred             EeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEe
Confidence               34688999999999999999999999988887664

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.44  E-value=1.8e-11  Score=101.35  Aligned_cols=160  Identities=11%  Similarity=0.081  Sum_probs=127.8

Q ss_pred             eccceeeeeecccce---eeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeC-CCC---eEEeeccCCC-eeEEEE
Q 046394           22 KQEAIAREVDILSSR---NQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNR-DGT---ELHCSKEHGE-VLKLQF   93 (378)
Q Consensus        22 ~~~~~i~~~d~~~~~---~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~-~~~---~~~~~~~~~~-~~~l~~   93 (378)
                      .+...++||.....+   ..+++..|+..|++++|+|.++.|++|+.|..-+||.. ++.   +.-.+..+.. .+++.|
T Consensus        29 ~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~W  108 (361)
T KOG1523|consen   29 PNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKW  108 (361)
T ss_pred             cCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEee
Confidence            445678888876654   67889999999999999999999999999999999994 543   2334444454 499999


Q ss_pred             -----EEEEEeCCCeEEEEEcCCCcEEE----EEecCCCCeeEEEEcCCCCEEEEEcCCCe-------------------
Q 046394           94 -----LLASINKLGQLRYQNVTMGEIVG----NFWTGLGRTDVIRVNPFNGVVSLGHSGGT-------------------  145 (378)
Q Consensus        94 -----~l~s~~~d~~i~iwd~~~~~~~~----~~~~~~~~v~~~~~s~~~~~l~~~~~d~~-------------------  145 (378)
                           .||+|+....|.||=++..+--.    .-..+...|+++.|+|++-++++|+.|+.                   
T Consensus       109 sP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~p  188 (361)
T KOG1523|consen  109 SPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTP  188 (361)
T ss_pred             cCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCC
Confidence                 99999999999998876544321    12234578999999999999999999987                   


Q ss_pred             -------------eeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCC
Q 046394          146 -------------MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRK  181 (378)
Q Consensus       146 -------------~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~  181 (378)
                                   +....+.|..+.|+|+|+.|+-.+.|.++.+=|...
T Consensus       189 Wgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~  237 (361)
T KOG1523|consen  189 WGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAG  237 (361)
T ss_pred             CccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCC
Confidence                         234567899999999999999999999999888754

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.42  E-value=2.6e-11  Score=116.43  Aligned_cols=230  Identities=13%  Similarity=0.090  Sum_probs=141.6

Q ss_pred             eecccceeeEEeecCCCCceEEEEcCCC-CEEEEEeCCCcEEEEeC---CCC-----eEEeec-cCCCeeEEEE-----E
Q 046394           30 VDILSSRNQYDIMLPELGPYTLDFTSSG-RYMAAAGCKGYPYFYNR---DGT-----ELHCSK-EHGEVLKLQF-----L   94 (378)
Q Consensus        30 ~d~~~~~~~~~l~~~~~~v~~~~~sp~g-~~l~~~~~dg~i~iwd~---~~~-----~~~~~~-~~~~~~~l~~-----~   94 (378)
                      |+. .|..+..+..|...|..++.++.. .++++||.||+|++||.   .+.     ...++. ..+.+..+..     .
T Consensus      1034 W~p-~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~ 1112 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQ 1112 (1431)
T ss_pred             CCc-cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCe
Confidence            443 567788899999999988888765 89999999999999993   222     112222 2222233333     8


Q ss_pred             EEEEeCCCeEEEEEcCCC--c-----EEEEEecC-CCCe-eEEEEcCCC-C-EEEEEcCCCe----------------ee
Q 046394           95 LASINKLGQLRYQNVTMG--E-----IVGNFWTG-LGRT-DVIRVNPFN-G-VVSLGHSGGT----------------ML  147 (378)
Q Consensus        95 l~s~~~d~~i~iwd~~~~--~-----~~~~~~~~-~~~v-~~~~~s~~~-~-~l~~~~~d~~----------------~~  147 (378)
                      +|.++.||.|.+.++...  .     +......+ .+.+ ...+|.... . .++.+...+.                ..
T Consensus      1113 ~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~ 1192 (1431)
T KOG1240|consen 1113 FAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQ 1192 (1431)
T ss_pred             EEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcC
Confidence            999999999999998752  1     11111111 2233 333444432 3 5555555554                23


Q ss_pred             ecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee----cCCceEEEEecCCC---------------ccccCC
Q 046394          148 CHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL----PGHAKTLDFSRKDS---------------GDFSGS  208 (378)
Q Consensus       148 ~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~----~~~i~~~~~sp~g~---------------~~~~~~  208 (378)
                      ...|.|++++.+|.++++++|+..|.+.+||+|-+.++...    +.++..+..+|-..               ..+|+.
T Consensus      1193 ~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~ 1272 (1431)
T KOG1240|consen 1193 LRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNM 1272 (1431)
T ss_pred             ccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeec
Confidence            34578999999999999999999999999999998888777    35566665555332               344554


Q ss_pred             CCCceEEEeeccCCcceeeeEE-cCCC----------CeEEEecCCCeEEEEEcCCCCcccccccCCC
Q 046394          209 HNYNRYMGYSMVKGYQIGKVSF-RPYE----------DVLGIGHSMGVSGILIPGSGEPNFDSWVANP  265 (378)
Q Consensus       209 ~~~~~~~~~~~~~~~~v~~~~~-sp~g----------~~l~~~~~~g~~~~~~~~s~d~~i~~w~~~~  265 (378)
                      ..+..-.++.. . ..+..+.+ .|..          .+.+.....   .+..+|+.|..|+.||...
T Consensus      1273 ~~g~~~~vl~~-s-~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~---~~~ltggsd~kIR~wD~~~ 1335 (1431)
T KOG1240|consen 1273 ETGLRQTVLWA-S-DGAPILSYALPSNDARKPDSLAGISCGVCEKN---GFLLTGGSDMKIRKWDPTR 1335 (1431)
T ss_pred             ccCcceEEEEc-C-CCCcchhhhcccccCCCCCcccceeeecccCC---ceeeecCCccceeeccCCC
Confidence            44433333322 1 11111211 1221          111222222   4567888999999998643

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.42  E-value=9.1e-11  Score=99.70  Aligned_cols=186  Identities=9%  Similarity=-0.017  Sum_probs=128.6

Q ss_pred             CCCCceEEEEcCCCCEEEEEeCCCcEEEEeCC-----CCeEEeeccCCCeeEEEE------EEEEEeCC--CeEEEEEcC
Q 046394           44 PELGPYTLDFTSSGRYMAAAGCKGYPYFYNRD-----GTELHCSKEHGEVLKLQF------LLASINKL--GQLRYQNVT  110 (378)
Q Consensus        44 ~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~-----~~~~~~~~~~~~~~~l~~------~l~s~~~d--~~i~iwd~~  110 (378)
                      ....|..++.. || .|++|-.+|.+.+|...     ..++..+..+.+...+.-      ++++||..  ..+.+||+.
T Consensus       104 ~~~~I~gl~~~-dg-~Litc~~sG~l~~~~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle  181 (412)
T KOG3881|consen  104 GTKSIKGLKLA-DG-TLITCVSSGNLQVRHDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLE  181 (412)
T ss_pred             ccccccchhhc-CC-EEEEEecCCcEEEEeccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecc
Confidence            33455555554 23 68888899999999954     445555655555433333      77889988  889999999


Q ss_pred             CCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCeeeecCCCEEEEEEecC--CCEEEEEECCCeEEEEEcCCc-eeeee
Q 046394          111 MGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGTMLCHQGPVSALAFHPN--GHLMATSGKDCKIKIWDLRKY-EVLQT  187 (378)
Q Consensus       111 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~~~~h~~~v~~~~~sp~--g~~l~t~~~d~~i~iwd~~~~-~~~~~  187 (378)
                      +.+.+.+-..-...-..+                   .-.-+++++.|-|.  ...||+++.-+.|++||.+.+ +++..
T Consensus       182 ~~~qiw~aKNvpnD~L~L-------------------rVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~  242 (412)
T KOG3881|consen  182 QSKQIWSAKNVPNDRLGL-------------------RVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQ  242 (412)
T ss_pred             cceeeeeccCCCCccccc-------------------eeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeE
Confidence            886555443222111111                   12345678889886  788999999999999999875 45666


Q ss_pred             e---cCCceEEEEecCCCc----------cccCCCCCceEEE-eeccCCcceeeeEEcCCCCeEEEecCCCeEEEEEc
Q 046394          188 L---PGHAKTLDFSRKDSG----------DFSGSHNYNRYMG-YSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILIP  251 (378)
Q Consensus       188 ~---~~~i~~~~~sp~g~~----------~~~~~~~~~~~~~-~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~~  251 (378)
                      +   ..+++++...|+|.+          ..++.+.+..... +.+ -.+.|.++..+|.+++||+++-|.+++++..
T Consensus       243 fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg-~tGsirsih~hp~~~~las~GLDRyvRIhD~  319 (412)
T KOG3881|consen  243 FDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKG-ITGSIRSIHCHPTHPVLASCGLDRYVRIHDI  319 (412)
T ss_pred             eccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCC-ccCCcceEEEcCCCceEEeeccceeEEEeec
Confidence            6   578999999998885          3445555555544 555 6677999999999988888877776655543

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.41  E-value=2.6e-11  Score=112.00  Aligned_cols=168  Identities=14%  Similarity=0.090  Sum_probs=111.3

Q ss_pred             ceeeeeeccccee--eEEeecCCCCceEEEEcCCCCEEEEEe-CCCcEEEE--eCCCCeEEeeccCCCe-eEEEE-----
Q 046394           25 AIAREVDILSSRN--QYDIMLPELGPYTLDFTSSGRYMAAAG-CKGYPYFY--NRDGTELHCSKEHGEV-LKLQF-----   93 (378)
Q Consensus        25 ~~i~~~d~~~~~~--~~~l~~~~~~v~~~~~sp~g~~l~~~~-~dg~i~iw--d~~~~~~~~~~~~~~~-~~l~~-----   93 (378)
                      ..|.+||+.+++.  +..+.+   ...+++|+|||+.|++++ .+|.+.||  |..+..+..+..+... ....|     
T Consensus       228 ~~i~i~dl~tg~~~~l~~~~g---~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~  304 (429)
T PRK01742        228 SQLVVHDLRSGARKVVASFRG---HNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQ  304 (429)
T ss_pred             cEEEEEeCCCCceEEEecCCC---ccCceeECCCCCEEEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCC
Confidence            4689999988754  222333   344789999999888765 57765555  6666666667666655 77888     


Q ss_pred             -EEEEEeCCCeEEEEEcCCC-cEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe------------eeecCCCEEEEEEe
Q 046394           94 -LLASINKLGQLRYQNVTMG-EIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT------------MLCHQGPVSALAFH  159 (378)
Q Consensus        94 -~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~------------~~~h~~~v~~~~~s  159 (378)
                       +++++..++...||++... .....+ .+..  .++.|+|+|+.|+.++.++.            +.. .....++.|+
T Consensus       305 ~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ia~~~~~~i~~~Dl~~g~~~~lt~-~~~~~~~~~s  380 (429)
T PRK01742        305 SILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKTLVMINGDNVVKQDLTSGSTEVLSS-TFLDESPSIS  380 (429)
T ss_pred             EEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEEEEEcCCCEEEEECCCCCeEEecC-CCCCCCceEC
Confidence             4445556788888877532 222223 3333  45789999999988776655            111 1123567899


Q ss_pred             cCCCEEEEEECCCeEEEEEcC--Cceeeeee---cCCceEEEEec
Q 046394          160 PNGHLMATSGKDCKIKIWDLR--KYEVLQTL---PGHAKTLDFSR  199 (378)
Q Consensus       160 p~g~~l~t~~~d~~i~iwd~~--~~~~~~~~---~~~i~~~~~sp  199 (378)
                      |+|++|+.++.++.+.+|++.  +|..+..+   .+.+..++|||
T Consensus       381 PdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp  425 (429)
T PRK01742        381 PNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWSP  425 (429)
T ss_pred             CCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccCC
Confidence            999999999999988888763  45555555   23455566665

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.39  E-value=4.4e-11  Score=97.43  Aligned_cols=58  Identities=19%  Similarity=0.456  Sum_probs=49.0

Q ss_pred             CCCEEEEEEecCCCEEEEEECC---CeEEEEEcCCceeeeee-cCCceEEEEecCCCccccC
Q 046394          150 QGPVSALAFHPNGHLMATSGKD---CKIKIWDLRKYEVLQTL-PGHAKTLDFSRKDSGDFSG  207 (378)
Q Consensus       150 ~~~v~~~~~sp~g~~l~t~~~d---~~i~iwd~~~~~~~~~~-~~~i~~~~~sp~g~~~~~~  207 (378)
                      ...+..+.|+|+|++|++++.+   |.|.+||+++.+.+.++ +..++.++|||||++.+..
T Consensus       100 ~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~~t~~~WsPdGr~~~ta  161 (194)
T PF08662_consen  100 TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHSDATDVEWSPDGRYLATA  161 (194)
T ss_pred             CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccCcEEEEEEcCCCCEEEEE
Confidence            4566789999999999998754   56999999999999888 7778999999999986654

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.36  E-value=2.3e-10  Score=91.45  Aligned_cols=132  Identities=18%  Similarity=0.197  Sum_probs=103.0

Q ss_pred             CceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeeccCCCe-eEEEE-----EEEEEeCCCeEEEEEcCCCcEEEEEe
Q 046394           47 GPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKEHGEV-LKLQF-----LLASINKLGQLRYQNVTMGEIVGNFW  119 (378)
Q Consensus        47 ~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~-~~l~~-----~l~s~~~d~~i~iwd~~~~~~~~~~~  119 (378)
                      .|++|-..|..+-|++++.|+.++-|| .+|...+.+++|++. .++.-     .+++|+.||++++||+++++.+..+.
T Consensus       116 eINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie  195 (325)
T KOG0649|consen  116 EINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIE  195 (325)
T ss_pred             ccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEec
Confidence            578999999888888888999999999 577888899999986 66655     89999999999999999999998886


Q ss_pred             cCCCCeeEEEEcCCCCEEEEEcCCCeeeec-CCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee--cCCceEEE
Q 046394          120 TGLGRTDVIRVNPFNGVVSLGHSGGTMLCH-QGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL--PGHAKTLD  196 (378)
Q Consensus       120 ~~~~~v~~~~~s~~~~~l~~~~~d~~~~~h-~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~--~~~i~~~~  196 (378)
                      ....+ +++                  ..| ...|.+++.+.  .++++|+ ...+.+|.+++.++...+  ++++..+.
T Consensus       196 ~yk~~-~~l------------------Rp~~g~wigala~~e--dWlvCGg-Gp~lslwhLrsse~t~vfpipa~v~~v~  253 (325)
T KOG0649|consen  196 PYKNP-NLL------------------RPDWGKWIGALAVNE--DWLVCGG-GPKLSLWHLRSSESTCVFPIPARVHLVD  253 (325)
T ss_pred             cccCh-hhc------------------CcccCceeEEEeccC--ceEEecC-CCceeEEeccCCCceEEEecccceeEee
Confidence            53221 111                  122 23466776654  4777665 556999999999988888  78888888


Q ss_pred             EecC
Q 046394          197 FSRK  200 (378)
Q Consensus       197 ~sp~  200 (378)
                      |..|
T Consensus       254 F~~d  257 (325)
T KOG0649|consen  254 FVDD  257 (325)
T ss_pred             eecc
Confidence            8665

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.36  E-value=2.1e-10  Score=106.08  Aligned_cols=180  Identities=14%  Similarity=0.132  Sum_probs=120.7

Q ss_pred             eeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCC---CcEEEEeCCCCeEEeeccCCCe-eEEEE------EE
Q 046394           26 IAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCK---GYPYFYNRDGTELHCSKEHGEV-LKLQF------LL   95 (378)
Q Consensus        26 ~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~-~~l~~------~l   95 (378)
                      .|.++|... .....+..+...+.+.+|||||++|+.++..   ..|++||..+.....+..+.+. .++.|      ++
T Consensus       171 ~l~~~d~~g-~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~  249 (417)
T TIGR02800       171 ELQVADYDG-ANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLA  249 (417)
T ss_pred             eEEEEcCCC-CCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEE
Confidence            577777753 3345566666678899999999999887653   4799999655444444444443 56777      44


Q ss_pred             EEEeCCC--eEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCC-e---------------eeecCCCEEEEE
Q 046394           96 ASINKLG--QLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGG-T---------------MLCHQGPVSALA  157 (378)
Q Consensus        96 ~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~-~---------------~~~h~~~v~~~~  157 (378)
                      ++.+.++  .|++||+.++... .+..+........|+|+|+.|+..+..+ .               +..+...+..+.
T Consensus       250 ~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~  328 (417)
T TIGR02800       250 VSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASPS  328 (417)
T ss_pred             EEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCeE
Confidence            4444443  5889999877643 3334444556789999999877655432 2               222445566789


Q ss_pred             EecCCCEEEEEECCC---eEEEEEcCCceeeeee-cCCceEEEEecCCCccccC
Q 046394          158 FHPNGHLMATSGKDC---KIKIWDLRKYEVLQTL-PGHAKTLDFSRKDSGDFSG  207 (378)
Q Consensus       158 ~sp~g~~l~t~~~d~---~i~iwd~~~~~~~~~~-~~~i~~~~~sp~g~~~~~~  207 (378)
                      |+|+|++++.++.++   .|.+||+.++...... ........|+|||...++.
T Consensus       329 ~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~p~~spdg~~l~~~  382 (417)
T TIGR02800       329 WSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTDTGLDESPSFAPNGRMILYA  382 (417)
T ss_pred             ECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccCCCCCCCceECCCCCEEEEE
Confidence            999999999888776   7999999875442222 3344567899998765543

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.35  E-value=1.5e-09  Score=90.08  Aligned_cols=155  Identities=17%  Similarity=0.159  Sum_probs=116.9

Q ss_pred             cceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCC--CeEEeeccCCCeeEEEE--------
Q 046394           24 EAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDG--TELHCSKEHGEVLKLQF--------   93 (378)
Q Consensus        24 ~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~~l~~--------   93 (378)
                      .+.+-|||-....++.++... .+|.++.++++  .|++.- .+.|+||....  +.++.+.....+..++-        
T Consensus        74 pNkviIWDD~k~~~i~el~f~-~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~  149 (346)
T KOG2111|consen   74 PNKVIIWDDLKERCIIELSFN-SEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKS  149 (346)
T ss_pred             CceEEEEecccCcEEEEEEec-cceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCce
Confidence            356788997777788888775 88999999976  566654 56899999543  34455544333311221        


Q ss_pred             EEEE-EeCCCeEEEEEcCCCcE--EEEEecCCCCeeEEEEcCCCCEEEEEcCCCe----eee-------------cCCCE
Q 046394           94 LLAS-INKLGQLRYQNVTMGEI--VGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT----MLC-------------HQGPV  153 (378)
Q Consensus        94 ~l~s-~~~d~~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~----~~~-------------h~~~v  153 (378)
                      +||. |-.-|.|.|-|+..-..  ...+..|.+.|.|++.+.+|..+|+++..|+    +..             ....|
T Consensus       150 ~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~i  229 (346)
T KOG2111|consen  150 LLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADI  229 (346)
T ss_pred             EEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheE
Confidence            4443 34569999999976554  4677889999999999999999999999999    111             23568


Q ss_pred             EEEEEecCCCEEEEEECCCeEEEEEcCCc
Q 046394          154 SALAFHPNGHLMATSGKDCKIKIWDLRKY  182 (378)
Q Consensus       154 ~~~~~sp~g~~l~t~~~d~~i~iwd~~~~  182 (378)
                      .+|+|||++.+||++|..|+|.||.++..
T Consensus       230 y~iaFSp~~s~LavsSdKgTlHiF~l~~~  258 (346)
T KOG2111|consen  230 YCIAFSPNSSWLAVSSDKGTLHIFSLRDT  258 (346)
T ss_pred             EEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence            99999999999999999999999998763

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.34  E-value=1.6e-11  Score=108.17  Aligned_cols=40  Identities=23%  Similarity=0.225  Sum_probs=29.2

Q ss_pred             CCCCeeEEEEcCCCCEEEEEcCCCe------------eee--cCCCEEEEEEec
Q 046394          121 GLGRTDVIRVNPFNGVVSLGHSGGT------------MLC--HQGPVSALAFHP  160 (378)
Q Consensus       121 ~~~~v~~~~~s~~~~~l~~~~~d~~------------~~~--h~~~v~~~~~sp  160 (378)
                      .-+...|++|||||++|++|+.|..            -.+  |+.+|..|+|.|
T Consensus       331 YFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  331 YFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             hccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence            3467889999999999999988876            111  556677777765

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.32  E-value=1.2e-09  Score=97.75  Aligned_cols=184  Identities=8%  Similarity=0.044  Sum_probs=118.8

Q ss_pred             eccceeeeeecc-ccee--eEEeecCCCCceEEEEcCCCCEEEEEeC-CCcEEEEeCC--C---CeEEeeccCCCeeEEE
Q 046394           22 KQEAIAREVDIL-SSRN--QYDIMLPELGPYTLDFTSSGRYMAAAGC-KGYPYFYNRD--G---TELHCSKEHGEVLKLQ   92 (378)
Q Consensus        22 ~~~~~i~~~d~~-~~~~--~~~l~~~~~~v~~~~~sp~g~~l~~~~~-dg~i~iwd~~--~---~~~~~~~~~~~~~~l~   92 (378)
                      ..++.|.+|++. ++..  ..... ....+..++|+|+|++|++++. ++.|.+|+.+  +   ..+..+.+...+..++
T Consensus        54 ~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~  132 (330)
T PRK11028         54 RPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSAN  132 (330)
T ss_pred             CCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeE
Confidence            346778888886 3322  12222 2346789999999999888765 8899999853  2   2233333434456666


Q ss_pred             E------EEEEEeCCCeEEEEEcCCCcEEE-----EEe-cCCCCeeEEEEcCCCCEEEEEcC-CCe-----eee------
Q 046394           93 F------LLASINKLGQLRYQNVTMGEIVG-----NFW-TGLGRTDVIRVNPFNGVVSLGHS-GGT-----MLC------  148 (378)
Q Consensus        93 ~------~l~s~~~d~~i~iwd~~~~~~~~-----~~~-~~~~~v~~~~~s~~~~~l~~~~~-d~~-----~~~------  148 (378)
                      +      ++++...++.|.+||+.+...+.     ... .....+..++|+|++++++++.. ++.     +..      
T Consensus       133 ~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~  212 (330)
T PRK11028        133 IDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIE  212 (330)
T ss_pred             eCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEE
Confidence            6      55666778999999997633221     111 12345678999999999988876 333     110      


Q ss_pred             -------c------CCCEEEEEEecCCCEEEEEE-CCCeEEEEEcCCce----eeeee--cCCceEEEEecCCCcccc
Q 046394          149 -------H------QGPVSALAFHPNGHLMATSG-KDCKIKIWDLRKYE----VLQTL--PGHAKTLDFSRKDSGDFS  206 (378)
Q Consensus       149 -------h------~~~v~~~~~sp~g~~l~t~~-~d~~i~iwd~~~~~----~~~~~--~~~i~~~~~sp~g~~~~~  206 (378)
                             +      ......+.++|+|++++++. .+++|.+|++....    .+..+  ...+..+.|+|||++.+.
T Consensus       213 ~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~v  290 (330)
T PRK11028        213 CVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIA  290 (330)
T ss_pred             EEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEE
Confidence                   0      01122588999999988875 47899999996532    22222  235678999999987544

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.31  E-value=9e-10  Score=102.03  Aligned_cols=179  Identities=9%  Similarity=0.015  Sum_probs=111.8

Q ss_pred             eeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeC-CC--cEEEEeCCCCeEEeeccCCCe-eEEEE------EE
Q 046394           26 IAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGC-KG--YPYFYNRDGTELHCSKEHGEV-LKLQF------LL   95 (378)
Q Consensus        26 ~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~-~~l~~------~l   95 (378)
                      .+.++|..... ...+..+...+.+..|||||+.|+..+. ++  .|++||..+.....+....+. ....|      ++
T Consensus       199 ~l~i~d~dG~~-~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La  277 (448)
T PRK04792        199 QLMIADYDGYN-EQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLA  277 (448)
T ss_pred             EEEEEeCCCCC-ceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEE
Confidence            55666764443 3455555678889999999998887654 33  588889655444444333333 55677      44


Q ss_pred             EEEeCCCe--EEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCC-Ce---------------eeecCCCEEEEE
Q 046394           96 ASINKLGQ--LRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSG-GT---------------MLCHQGPVSALA  157 (378)
Q Consensus        96 ~s~~~d~~--i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-~~---------------~~~h~~~v~~~~  157 (378)
                      ++.+.++.  |.+||+.+++.. .+..+.......+|+|||+.|+..+.. +.               +..........+
T Consensus       278 ~~~~~~g~~~Iy~~dl~tg~~~-~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~  356 (448)
T PRK04792        278 LVLSKDGQPEIYVVDIATKALT-RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGS  356 (448)
T ss_pred             EEEeCCCCeEEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCee
Confidence            45555664  888898877654 344444566778999999987766543 32               111122234568


Q ss_pred             EecCCCEEEEEECC-C--eEEEEEcCCceeeeee-cCCceEEEEecCCCcccc
Q 046394          158 FHPNGHLMATSGKD-C--KIKIWDLRKYEVLQTL-PGHAKTLDFSRKDSGDFS  206 (378)
Q Consensus       158 ~sp~g~~l~t~~~d-~--~i~iwd~~~~~~~~~~-~~~i~~~~~sp~g~~~~~  206 (378)
                      |+|||++|+..+.+ +  .|.++|+.++...... ........|+|||...++
T Consensus       357 ~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt~~~~d~~ps~spdG~~I~~  409 (448)
T PRK04792        357 ITPDGRSMIMVNRTNGKFNIARQDLETGAMQVLTSTRLDESPSVAPNGTMVIY  409 (448)
T ss_pred             ECCCCCEEEEEEecCCceEEEEEECCCCCeEEccCCCCCCCceECCCCCEEEE
Confidence            99999998776653 3  4666788777642211 222345579999876544

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.31  E-value=1.2e-11  Score=99.81  Aligned_cols=132  Identities=20%  Similarity=0.226  Sum_probs=103.1

Q ss_pred             EEeccceeeeeecccceeeE----------EeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCC---CCeE-Ee--ec
Q 046394           20 RIKQEAIAREVDILSSRNQY----------DIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRD---GTEL-HC--SK   83 (378)
Q Consensus        20 ~~~~~~~i~~~d~~~~~~~~----------~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~---~~~~-~~--~~   83 (378)
                      ....++.+-+||+.++.++.          ....|...|.++.|.+.-..=++|+.+..+..|+++   +... ..  --
T Consensus       170 aGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~l  249 (323)
T KOG0322|consen  170 AGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITL  249 (323)
T ss_pred             EeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEe
Confidence            34567889999999985443          345688899999998766666788888889999843   2211 11  12


Q ss_pred             cCCCeeEEEE-----EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCeeeecCCCEEEEEE
Q 046394           84 EHGEVLKLQF-----LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGTMLCHQGPVSALAF  158 (378)
Q Consensus        84 ~~~~~~~l~~-----~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~~~~h~~~v~~~~~  158 (378)
                      .|.++..+..     ++||+|.|+.|+||..++.+++..+.                            .|.+.|++++|
T Consensus       250 knpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLk----------------------------yHsagvn~vAf  301 (323)
T KOG0322|consen  250 KNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLK----------------------------YHSAGVNAVAF  301 (323)
T ss_pred             cCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhh----------------------------hhhcceeEEEe
Confidence            3445544555     99999999999999999999988876                            57788999999


Q ss_pred             ecCCCEEEEEECCCeEEEEEc
Q 046394          159 HPNGHLMATSGKDCKIKIWDL  179 (378)
Q Consensus       159 sp~g~~l~t~~~d~~i~iwd~  179 (378)
                      +|+...+|++|.|+.|.+|++
T Consensus       302 spd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  302 SPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             CCCCchhhhccCCceEEeeec
Confidence            999999999999999999986

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.31  E-value=4.4e-10  Score=104.14  Aligned_cols=174  Identities=11%  Similarity=0.081  Sum_probs=115.8

Q ss_pred             cEEEEeCCCCeEEeeccCCCe-eEEEE-----EEEEEe---CCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEE
Q 046394           68 YPYFYNRDGTELHCSKEHGEV-LKLQF-----LLASIN---KLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVS  138 (378)
Q Consensus        68 ~i~iwd~~~~~~~~~~~~~~~-~~l~~-----~l~s~~---~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  138 (378)
                      .|.+||.+|.....+..+... .+..|     .|+..+   .+..|.+||+.+++.. .+....+.+...+|+|||+.|+
T Consensus       183 ~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la  261 (435)
T PRK05137        183 RLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVV  261 (435)
T ss_pred             EEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEE
Confidence            789999888887777777654 88888     444443   3568999999888754 3444556778899999998765


Q ss_pred             -EEcCCCe---------------eeecCCCEEEEEEecCCCEEEEEEC-CC--eEEEEEcCCceeeeee--cCCceEEEE
Q 046394          139 -LGHSGGT---------------MLCHQGPVSALAFHPNGHLMATSGK-DC--KIKIWDLRKYEVLQTL--PGHAKTLDF  197 (378)
Q Consensus       139 -~~~~d~~---------------~~~h~~~v~~~~~sp~g~~l~t~~~-d~--~i~iwd~~~~~~~~~~--~~~i~~~~~  197 (378)
                       +.+.++.               +..+.+.....+|+|||+.|+..+. +|  .|.+||+..+......  ...+..+.|
T Consensus       262 ~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~  341 (435)
T PRK05137        262 MSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRYSTPVW  341 (435)
T ss_pred             EEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcccCeEE
Confidence             4444443               3344555677899999999887764 33  6888898766543322  355677899


Q ss_pred             ecCCCccccCCCCC--ceEEEeec--------cCCcceeeeEEcCCCCeEEEecC
Q 046394          198 SRKDSGDFSGSHNY--NRYMGYSM--------VKGYQIGKVSFRPYEDVLGIGHS  242 (378)
Q Consensus       198 sp~g~~~~~~~~~~--~~~~~~~~--------~~~~~v~~~~~sp~g~~l~~~~~  242 (378)
                      ||||...++.....  ..+..+..        .....+..+.|+|||+.|+....
T Consensus       342 SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~lt~~~~~~~p~~spDG~~i~~~~~  396 (435)
T PRK05137        342 SPRGDLIAFTKQGGGQFSIGVMKPDGSGERILTSGFLVEGPTWAPNGRVIMFFRQ  396 (435)
T ss_pred             CCCCCEEEEEEcCCCceEEEEEECCCCceEeccCCCCCCCCeECCCCCEEEEEEc
Confidence            99998754422111  11111111        01224678899999998876554

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.30  E-value=7.7e-10  Score=102.59  Aligned_cols=179  Identities=8%  Similarity=0.043  Sum_probs=115.8

Q ss_pred             eeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCC---CcEEEEeCCCCeEEeeccCCCe-eEEEE------EE
Q 046394           26 IAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCK---GYPYFYNRDGTELHCSKEHGEV-LKLQF------LL   95 (378)
Q Consensus        26 ~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~-~~l~~------~l   95 (378)
                      .+.++|...+. ...+..+...+.+..|||||+.|+..+.+   ..|.+||..+.....+....+. ....|      ++
T Consensus       180 ~l~~~d~~g~~-~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la  258 (430)
T PRK00178        180 TLQRSDYDGAR-AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLA  258 (430)
T ss_pred             EEEEECCCCCC-ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEE
Confidence            46677776443 45566666788999999999998876543   3689999765544444443333 45677      33


Q ss_pred             EEEeCCC--eEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCC-Ce---------------eeecCCCEEEEE
Q 046394           96 ASINKLG--QLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSG-GT---------------MLCHQGPVSALA  157 (378)
Q Consensus        96 ~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-~~---------------~~~h~~~v~~~~  157 (378)
                      ++.+.++  .|.+||+.++... .+..+........|+|||+.|+..+.. +.               +...........
T Consensus       259 ~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~  337 (430)
T PRK00178        259 FVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPR  337 (430)
T ss_pred             EEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceE
Confidence            3454444  6888899887654 344455556678999999877665543 32               111111223468


Q ss_pred             EecCCCEEEEEECC-C--eEEEEEcCCceeeeee--cCCceEEEEecCCCccccC
Q 046394          158 FHPNGHLMATSGKD-C--KIKIWDLRKYEVLQTL--PGHAKTLDFSRKDSGDFSG  207 (378)
Q Consensus       158 ~sp~g~~l~t~~~d-~--~i~iwd~~~~~~~~~~--~~~i~~~~~sp~g~~~~~~  207 (378)
                      |+|+|++|+..+.+ +  .|.+||+.++.. ..+  ........|+|||...++.
T Consensus       338 ~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~-~~lt~~~~~~~p~~spdg~~i~~~  391 (430)
T PRK00178        338 LSADGKTLVMVHRQDGNFHVAAQDLQRGSV-RILTDTSLDESPSVAPNGTMLIYA  391 (430)
T ss_pred             ECCCCCEEEEEEccCCceEEEEEECCCCCE-EEccCCCCCCCceECCCCCEEEEE
Confidence            99999998877653 3  588899988754 333  2233456899998765554

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.29  E-value=6.6e-10  Score=98.76  Aligned_cols=244  Identities=13%  Similarity=0.169  Sum_probs=148.4

Q ss_pred             CeeecCCceeeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEe-----C-----CCcEEEEeCCCC
Q 046394            8 GYLEAEGVEKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAG-----C-----KGYPYFYNRDGT   77 (378)
Q Consensus         8 ~~l~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~-----~-----dg~i~iwd~~~~   77 (378)
                      ...+-....+.+.+..++.+.|++..+...+......  .++.+.|||-|.+|.+--     .     .-.+.+|+....
T Consensus        38 ~v~~~S~~G~lfA~~~~~~v~i~~~~~~~~~lt~~~~--~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~  115 (566)
T KOG2315|consen   38 NVFAYSNNGRLFAYSDNQVVKVFEIATLKVVLCVELK--KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETG  115 (566)
T ss_pred             eeEEEcCCCcEEEEEcCCeEEEEEccCCcEEEEeccc--eeeeeeecccccccccccccccccCCCCCCCceeeeeeccc
Confidence            3444455677888899999999999888755554443  789999999999887531     1     235779984432


Q ss_pred             eE-EeeccCCCe-eEEEE----EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeE------------------------
Q 046394           78 EL-HCSKEHGEV-LKLQF----LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDV------------------------  127 (378)
Q Consensus        78 ~~-~~~~~~~~~-~~l~~----~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~------------------------  127 (378)
                      .. ..+...... .++.|    .++.=-..+.+.+|++.+.+.+.. ..+...++.                        
T Consensus       116 ~~~s~~q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~-kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa  194 (566)
T KOG2315|consen  116 VQRSQIQKKMQNGWVPQFSIDESLAARLVSNEVQFYDLGSFKTIQH-KLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPA  194 (566)
T ss_pred             eehhheehhhhcCcccccccchhhhhhhhcceEEEEecCCccceee-eeeccceeeEEecCCCCCceEEEEccCCCCCCc
Confidence            22 222222111 44555    111111224566666544221110 111222333                        


Q ss_pred             ----------------------------EEEcCCCC-EEEEEc--CCCe--------------ee--------ecCCCEE
Q 046394          128 ----------------------------IRVNPFNG-VVSLGH--SGGT--------------ML--------CHQGPVS  154 (378)
Q Consensus       128 ----------------------------~~~s~~~~-~l~~~~--~d~~--------------~~--------~h~~~v~  154 (378)
                                                  +.|++-|+ +|+.++  -|.+              +.        .-.++|.
T Consensus       195 ~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVh  274 (566)
T KOG2315|consen  195 SVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVH  274 (566)
T ss_pred             EEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCce
Confidence                                        34444443 222111  1221              11        1268999


Q ss_pred             EEEEecCCCEEEEEE--CCCeEEEEEcCCceeeeee-cCCceEEEEecCCCc-------------cccCCCCCceEEEee
Q 046394          155 ALAFHPNGHLMATSG--KDCKIKIWDLRKYEVLQTL-PGHAKTLDFSRKDSG-------------DFSGSHNYNRYMGYS  218 (378)
Q Consensus       155 ~~~~sp~g~~l~t~~--~d~~i~iwd~~~~~~~~~~-~~~i~~~~~sp~g~~-------------~~~~~~~~~~~~~~~  218 (378)
                      ++.|+|+|+-|+.+-  .-..+.|||++ +.++..+ .++-+++-|+|.|.+             .+|+......+..+.
T Consensus       275 dv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~  353 (566)
T KOG2315|consen  275 DVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFK  353 (566)
T ss_pred             EEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCCCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccc
Confidence            999999998876654  45689999986 6788888 688899999998875             677777777776665


Q ss_pred             ccCCcceeeeEEcCCCCeEEEecCCCeEEEEEcCCCCcccccccCC
Q 046394          219 MVKGYQIGKVSFRPYEDVLGIGHSMGVSGILIPGSGEPNFDSWVAN  264 (378)
Q Consensus       219 ~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~~~s~d~~i~~w~~~  264 (378)
                      .   ..-+-+.|+|||+++++++..-..+      -|+.++||+..
T Consensus       354 a---~~tt~~eW~PdGe~flTATTaPRlr------vdNg~Kiwhyt  390 (566)
T KOG2315|consen  354 A---ANTTVFEWSPDGEYFLTATTAPRLR------VDNGIKIWHYT  390 (566)
T ss_pred             c---CCceEEEEcCCCcEEEEEeccccEE------ecCCeEEEEec
Confidence            4   2345688999999998887664222      14556666543

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.28  E-value=6.1e-10  Score=102.76  Aligned_cols=177  Identities=11%  Similarity=0.035  Sum_probs=110.5

Q ss_pred             CcEEEEeCCCCeEEeeccCCCe-eEEEE-----EEEEEeC---CCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEE
Q 046394           67 GYPYFYNRDGTELHCSKEHGEV-LKLQF-----LLASINK---LGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVV  137 (378)
Q Consensus        67 g~i~iwd~~~~~~~~~~~~~~~-~~l~~-----~l~s~~~---d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  137 (378)
                      ..|.++|.+|.....+..+... .+.+|     .|+..+.   ...|.+||+.+++... +....+.+.+.+|+|||+.|
T Consensus       176 ~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~l  254 (427)
T PRK02889        176 YQLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTL  254 (427)
T ss_pred             cEEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEE
Confidence            3688888888776666666554 77888     4554443   3469999999887643 33344566789999999877


Q ss_pred             EE-EcCCCe---------------eeecCCCEEEEEEecCCCEEEEEEC-CCeEEEEEc--CCceeeee-e-cCCceEEE
Q 046394          138 SL-GHSGGT---------------MLCHQGPVSALAFHPNGHLMATSGK-DCKIKIWDL--RKYEVLQT-L-PGHAKTLD  196 (378)
Q Consensus       138 ~~-~~~d~~---------------~~~h~~~v~~~~~sp~g~~l~t~~~-d~~i~iwd~--~~~~~~~~-~-~~~i~~~~  196 (378)
                      +. .+.++.               +..+.+......|+|||++|+..+. ++...||.+  .++..... + .......+
T Consensus       255 a~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~  334 (427)
T PRK02889        255 AVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPR  334 (427)
T ss_pred             EEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceE
Confidence            64 455554               2234445667899999999886664 455566654  44443222 2 33455689


Q ss_pred             EecCCCccccCCCCC--ceEEEeecc--------CCcceeeeEEcCCCCeEEEecCCC
Q 046394          197 FSRKDSGDFSGSHNY--NRYMGYSMV--------KGYQIGKVSFRPYEDVLGIGHSMG  244 (378)
Q Consensus       197 ~sp~g~~~~~~~~~~--~~~~~~~~~--------~~~~v~~~~~sp~g~~l~~~~~~g  244 (378)
                      |||||.+.++.....  ..+..+...        .........|+|||+.|+.+..++
T Consensus       335 ~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~~~~~~p~~spdg~~l~~~~~~~  392 (427)
T PRK02889        335 ISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTDTTRDESPSFAPNGRYILYATQQG  392 (427)
T ss_pred             ECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccCCCCccCceECCCCCEEEEEEecC
Confidence            999998754432211  112222110        112346789999999888776544

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.27  E-value=3.4e-10  Score=104.76  Aligned_cols=192  Identities=14%  Similarity=0.066  Sum_probs=131.5

Q ss_pred             eeeEEEeccceeeeeeccccee--eEE----eecCCCCceEEEEcCCCC--EEEEEeCCCcEEEEeCCCCe-------EE
Q 046394           16 EKTWRIKQEAIAREVDILSSRN--QYD----IMLPELGPYTLDFTSSGR--YMAAAGCKGYPYFYNRDGTE-------LH   80 (378)
Q Consensus        16 ~~~~~~~~~~~i~~~d~~~~~~--~~~----l~~~~~~v~~~~~sp~g~--~l~~~~~dg~i~iwd~~~~~-------~~   80 (378)
                      ...+.+..+|.|-+||+..+..  ...    ...|...++.+.|..+..  -+++++.||.|..|+.+.-.       ..
T Consensus       256 ~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~  335 (555)
T KOG1587|consen  256 NLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLE  335 (555)
T ss_pred             ceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccc
Confidence            3344566789999999988766  333    345788899999976554  49999999999999843211       11


Q ss_pred             e-------eccCCCeeEEEE------EEEEEeCCCeEEEEEcC---CC-----cEEEEEecCCCCeeEEEEcCCCCE-EE
Q 046394           81 C-------SKEHGEVLKLQF------LLASINKLGQLRYQNVT---MG-----EIVGNFWTGLGRTDVIRVNPFNGV-VS  138 (378)
Q Consensus        81 ~-------~~~~~~~~~l~~------~l~s~~~d~~i~iwd~~---~~-----~~~~~~~~~~~~v~~~~~s~~~~~-l~  138 (378)
                      .       ...+.+++++.|      .|+.|+..|.|.--+-.   .+     +....+..|.++|.++.++|-+.. |.
T Consensus       336 ~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fl  415 (555)
T KOG1587|consen  336 SKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFL  415 (555)
T ss_pred             cccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceee
Confidence            1       112223488888      89999999998773322   21     224456678899999999999864 44


Q ss_pred             EEcCCCe--------------eeecCCCEEEEEEecC-CCEEEEEECCCeEEEEEcCCce--eeeee--c-CCceEEEEe
Q 046394          139 LGHSGGT--------------MLCHQGPVSALAFHPN-GHLMATSGKDCKIKIWDLRKYE--VLQTL--P-GHAKTLDFS  198 (378)
Q Consensus       139 ~~~~d~~--------------~~~h~~~v~~~~~sp~-g~~l~t~~~d~~i~iwd~~~~~--~~~~~--~-~~i~~~~~s  198 (378)
                      ++++.+.              +..+...|++++|||. ...|+++..||.|.|||+....  ++.+.  . ...+.+.|+
T Consensus       416 s~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s  495 (555)
T KOG1587|consen  416 SVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWS  495 (555)
T ss_pred             eeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeecC
Confidence            4443333              4456667999999994 4678899999999999997533  33333  2 445667777


Q ss_pred             cCCCccccC
Q 046394          199 RKDSGDFSG  207 (378)
Q Consensus       199 p~g~~~~~~  207 (378)
                      ++|+....+
T Consensus       496 ~~g~~lavG  504 (555)
T KOG1587|consen  496 PNGKLLAVG  504 (555)
T ss_pred             CCCcEEEEe
Confidence            777654443

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.27  E-value=1.2e-11  Score=107.73  Aligned_cols=165  Identities=18%  Similarity=0.231  Sum_probs=122.4

Q ss_pred             eEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEee-ccCCC-eeEEEE-------EEEEEeCCCeEEEE
Q 046394           38 QYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCS-KEHGE-VLKLQF-------LLASINKLGQLRYQ  107 (378)
Q Consensus        38 ~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~-~~~~~-~~~l~~-------~l~s~~~d~~i~iw  107 (378)
                      ...|..|.+.|..+.|...|..|++|+.|..|.+|| ..+.....+ .+|.. +....|       -+++++.||.+++=
T Consensus       135 ~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s  214 (559)
T KOG1334|consen  135 QKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVS  214 (559)
T ss_pred             hhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeee
Confidence            455788999999999999999999999999999999 666665554 34543 233335       78999999999987


Q ss_pred             EcCC-CcE--EEEEecCCCCeeEEEEcCCCC-EEEEEcCCCe-----------------eeecCC---CEEEEEEecC-C
Q 046394          108 NVTM-GEI--VGNFWTGLGRTDVIRVNPFNG-VVSLGHSGGT-----------------MLCHQG---PVSALAFHPN-G  162 (378)
Q Consensus       108 d~~~-~~~--~~~~~~~~~~v~~~~~s~~~~-~l~~~~~d~~-----------------~~~h~~---~v~~~~~sp~-g  162 (378)
                      .+.. +.+  ...+..|.++|..++.-|+.. .|.+++.|+.                 -..+..   ...+++.+|- .
T Consensus       215 ~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt  294 (559)
T KOG1334|consen  215 EILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNT  294 (559)
T ss_pred             eeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCc
Confidence            7653 322  334556889999999999884 6788888887                 112222   4678888894 4


Q ss_pred             CEEEEEECCCeEEEEEcCCce------eeeee---------cCCceEEEEecCCC
Q 046394          163 HLMATSGKDCKIKIWDLRKYE------VLQTL---------PGHAKTLDFSRKDS  202 (378)
Q Consensus       163 ~~l~t~~~d~~i~iwd~~~~~------~~~~~---------~~~i~~~~~sp~g~  202 (378)
                      +.+++++.|..+++||.+...      .+.++         +..|++++|+.+|.
T Consensus       295 ~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~s  349 (559)
T KOG1334|consen  295 NEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGS  349 (559)
T ss_pred             cccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCcc
Confidence            579999999999999987532      12333         34689999997664

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.27  E-value=1.2e-09  Score=100.87  Aligned_cols=177  Identities=11%  Similarity=0.063  Sum_probs=110.7

Q ss_pred             cEEEEeCCCCeEEeeccCCCe-eEEEE-----EEEEEe---CCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEE
Q 046394           68 YPYFYNRDGTELHCSKEHGEV-LKLQF-----LLASIN---KLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVS  138 (378)
Q Consensus        68 ~i~iwd~~~~~~~~~~~~~~~-~~l~~-----~l~s~~---~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  138 (378)
                      .|.+||.+|.....+..+... ....|     .|+..+   .+..|.+||+.+++.... ....+.+..+.|+|||+.|+
T Consensus       180 ~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l-~~~~~~~~~~~~SPDG~~La  258 (429)
T PRK03629        180 ELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV-ASFPRHNGAPAFSPDGSKLA  258 (429)
T ss_pred             eEEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEc-cCCCCCcCCeEECCCCCEEE
Confidence            699999888766666555544 77888     444332   345799999988865332 22334456789999999777


Q ss_pred             EE-cCCCe---------------eeecCCCEEEEEEecCCCEEEEEECC-C--eEEEEEcCCceeeeee--cCCceEEEE
Q 046394          139 LG-HSGGT---------------MLCHQGPVSALAFHPNGHLMATSGKD-C--KIKIWDLRKYEVLQTL--PGHAKTLDF  197 (378)
Q Consensus       139 ~~-~~d~~---------------~~~h~~~v~~~~~sp~g~~l~t~~~d-~--~i~iwd~~~~~~~~~~--~~~i~~~~~  197 (378)
                      .. +.++.               +..+...+....|+|||+.|+.++.+ +  .|.++|+.++......  ......+.|
T Consensus       259 ~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~  338 (429)
T PRK03629        259 FALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADV  338 (429)
T ss_pred             EEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEE
Confidence            54 33442               22334567789999999998877754 3  4555577666543222  345567899


Q ss_pred             ecCCCccccCCCCC--ceEEEeecc--------CCcceeeeEEcCCCCeEEEecCCCe
Q 046394          198 SRKDSGDFSGSHNY--NRYMGYSMV--------KGYQIGKVSFRPYEDVLGIGHSMGV  245 (378)
Q Consensus       198 sp~g~~~~~~~~~~--~~~~~~~~~--------~~~~v~~~~~sp~g~~l~~~~~~g~  245 (378)
                      ||||.+.++.....  ..+..+...        .........|+|||++|+.++.++.
T Consensus       339 SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~~~~~~p~~SpDG~~i~~~s~~~~  396 (429)
T PRK03629        339 SSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTDTFLDETPSIAPNGTMVIYSSSQGM  396 (429)
T ss_pred             CCCCCEEEEEEccCCCceEEEEECCCCCeEEeCCCCCCCCceECCCCCEEEEEEcCCC
Confidence            99998744321111  111111110        1112346789999999988887764

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.26  E-value=5.1e-09  Score=86.19  Aligned_cols=176  Identities=17%  Similarity=0.153  Sum_probs=120.1

Q ss_pred             CCceeeEEEeccceeeeeecccce--eeEEeecCCC---CceEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEeeccCC-
Q 046394           13 EGVEKTWRIKQEAIAREVDILSSR--NQYDIMLPEL---GPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTELHCSKEHG-   86 (378)
Q Consensus        13 ~~~~~~~~~~~~~~i~~~d~~~~~--~~~~l~~~~~---~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-   86 (378)
                      .+..+.+.+-+|..|.+-...+.-  .+.....+.+   .-..++||||+..||.+...|+|+++|+.|..+..+.... 
T Consensus         6 ~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p~~~   85 (282)
T PF15492_consen    6 SSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIPPAMS   85 (282)
T ss_pred             cCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeEEcCcccc
Confidence            345566677777777665543331  1122222222   2358999999999999999999999998887776654322 


Q ss_pred             ------C-eeEEEE-----------EEEEEeCCCeEEEEEcCC-----CcEEEEEec---CCCCeeEEEEcCCCCEEEEE
Q 046394           87 ------E-VLKLQF-----------LLASINKLGQLRYQNVTM-----GEIVGNFWT---GLGRTDVIRVNPFNGVVSLG  140 (378)
Q Consensus        87 ------~-~~~l~~-----------~l~s~~~d~~i~iwd~~~-----~~~~~~~~~---~~~~v~~~~~s~~~~~l~~~  140 (378)
                            . +..|.|           .|+.-..+|.++-|-+..     .+...+|..   +...|.++.|+|.-++|++|
T Consensus        86 ~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVg  165 (282)
T PF15492_consen   86 FPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVG  165 (282)
T ss_pred             cCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEe
Confidence                  1 244555           455556777777666532     223334332   46789999999999988887


Q ss_pred             cCCCe--------------------------------------------------e----eecCCCEEEEEEecCCCEEE
Q 046394          141 HSGGT--------------------------------------------------M----LCHQGPVSALAFHPNGHLMA  166 (378)
Q Consensus       141 ~~d~~--------------------------------------------------~----~~h~~~v~~~~~sp~g~~l~  166 (378)
                      +....                                                  +    ......|..|.+||||..||
T Consensus       166 G~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La  245 (282)
T PF15492_consen  166 GCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLA  245 (282)
T ss_pred             ccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEE
Confidence            64322                                                  1    11246788999999999999


Q ss_pred             EEECCCeEEEEEcCCceeeeee
Q 046394          167 TSGKDCKIKIWDLRKYEVLQTL  188 (378)
Q Consensus       167 t~~~d~~i~iwd~~~~~~~~~~  188 (378)
                      +...+|.|.+|++.+..+....
T Consensus       246 ~ih~sG~lsLW~iPsL~~~~~W  267 (282)
T PF15492_consen  246 CIHFSGSLSLWEIPSLRLQRSW  267 (282)
T ss_pred             EEEcCCeEEEEecCcchhhccc
Confidence            9999999999999887765554

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.26  E-value=5.3e-10  Score=100.01  Aligned_cols=152  Identities=14%  Similarity=0.114  Sum_probs=102.1

Q ss_pred             CCCCEEEEEeCCCcEEEEeC-CCCeEEeecc--C-CCe-eEEEE-------------------------EEEEEeCCCeE
Q 046394           55 SSGRYMAAAGCKGYPYFYNR-DGTELHCSKE--H-GEV-LKLQF-------------------------LLASINKLGQL  104 (378)
Q Consensus        55 p~g~~l~~~~~dg~i~iwd~-~~~~~~~~~~--~-~~~-~~l~~-------------------------~l~s~~~d~~i  104 (378)
                      |-+.|+|....||.++||+. .++....+..  + .+. ++..|                         .++-|...|.|
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v   82 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV   82 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence            44578999999999999994 4433333322  1 122 44555                         67777788899


Q ss_pred             EEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCeeeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCcee
Q 046394          105 RYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGTMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEV  184 (378)
Q Consensus       105 ~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~  184 (378)
                      .+|++..|+....+...                          .|.+.|.++.++.+-..|.+++.|+.+..|+...+..
T Consensus        83 ~~ys~~~g~it~~~st~--------------------------~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~  136 (541)
T KOG4547|consen   83 LLYSVAGGEITAKLSTD--------------------------KHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVI  136 (541)
T ss_pred             EEEEecCCeEEEEEecC--------------------------CCCCcceeeecccccCceEecCCceeEEEEeccccee
Confidence            99999888887777632                          5666666666666666667777777777777766666


Q ss_pred             eeee---cCCceEEEEecCCCc--------cccCCCCCceEEEeeccCCcceeeeEEcCC
Q 046394          185 LQTL---PGHAKTLDFSRKDSG--------DFSGSHNYNRYMGYSMVKGYQIGKVSFRPY  233 (378)
Q Consensus       185 ~~~~---~~~i~~~~~sp~g~~--------~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~  233 (378)
                      ++.+   ...+.+++.+|||..        .+|+..+.+.+..+.+ |.++|.++.|..+
T Consensus       137 ~~~~~~~~~~~~sl~is~D~~~l~~as~~ik~~~~~~kevv~~ftg-h~s~v~t~~f~~~  195 (541)
T KOG4547|consen  137 IRIWKEQKPLVSSLCISPDGKILLTASRQIKVLDIETKEVVITFTG-HGSPVRTLSFTTL  195 (541)
T ss_pred             eeeeccCCCccceEEEcCCCCEEEeccceEEEEEccCceEEEEecC-CCcceEEEEEEEe
Confidence            6665   355666777777553        4566666666777766 7777777777665

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.24  E-value=2.7e-10  Score=109.66  Aligned_cols=192  Identities=16%  Similarity=0.148  Sum_probs=142.0

Q ss_pred             EeCCCCeEEeeccCCCe-eEEEE------EEEEEeCCCeEEEEEcCC--C-----cEEEEEecCCCCeeEEEEcCCCCEE
Q 046394           72 YNRDGTELHCSKEHGEV-LKLQF------LLASINKLGQLRYQNVTM--G-----EIVGNFWTGLGRTDVIRVNPFNGVV  137 (378)
Q Consensus        72 wd~~~~~~~~~~~~~~~-~~l~~------~l~s~~~d~~i~iwd~~~--~-----~~~~~~~~~~~~v~~~~~s~~~~~l  137 (378)
                      |+..|..+..+..|... ..++.      +|+|||.||+|++||++.  +     ....++......+.++..-+.+..+
T Consensus      1034 W~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~ 1113 (1431)
T KOG1240|consen 1034 WNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQF 1113 (1431)
T ss_pred             CCccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeE
Confidence            78888889999999875 66666      999999999999999864  1     2333444456889999999999999


Q ss_pred             EEEcCCCee----eec------------------CCCEEEE-EEec-CCC-EEEEEECCCeEEEEEcCCceeeeee----
Q 046394          138 SLGHSGGTM----LCH------------------QGPVSAL-AFHP-NGH-LMATSGKDCKIKIWDLRKYEVLQTL----  188 (378)
Q Consensus       138 ~~~~~d~~~----~~h------------------~~~v~~~-~~sp-~g~-~l~t~~~d~~i~iwd~~~~~~~~~~----  188 (378)
                      |+++.||.+    ..|                  .+.+.+| +|.. .+. .++.+..-+.|..||+++...+.++    
T Consensus      1114 Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~ 1193 (1431)
T KOG1240|consen 1114 AVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQL 1193 (1431)
T ss_pred             EEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCc
Confidence            999999980    011                  1223333 3333 233 6777888889999999987766555    


Q ss_pred             -cCCceEEEEecCCC----------ccccCCCCCceEEEeeccCCcceeeeEEcCCCC---eEEEe-c-CCCeEEEEEcC
Q 046394          189 -PGHAKTLDFSRKDS----------GDFSGSHNYNRYMGYSMVKGYQIGKVSFRPYED---VLGIG-H-SMGVSGILIPG  252 (378)
Q Consensus       189 -~~~i~~~~~sp~g~----------~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~---~l~~~-~-~~g~~~~~~~~  252 (378)
                       ++.|++++.+|.+.          ..+|+.+-+.++..|..++..+|..|..+|-..   ..+++ . ..+.+.+|-..
T Consensus      1194 ~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~ 1273 (1431)
T KOG1240|consen 1194 RHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNME 1273 (1431)
T ss_pred             cccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecc
Confidence             78899999999665          478888888888888876778898888887654   44443 3 46667777766


Q ss_pred             CCCcccccccC
Q 046394          253 SGEPNFDSWVA  263 (378)
Q Consensus       253 s~d~~i~~w~~  263 (378)
                      .+.+...+|..
T Consensus      1274 ~g~~~~vl~~s 1284 (1431)
T KOG1240|consen 1274 TGLRQTVLWAS 1284 (1431)
T ss_pred             cCcceEEEEcC
Confidence            67777777765

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.21  E-value=3.4e-09  Score=87.10  Aligned_cols=167  Identities=15%  Similarity=0.097  Sum_probs=116.7

Q ss_pred             ceEEEEcCCCCEEEEEeCCCcEEEEeCCCCe---EEeeccCCCe-eEEEE------EEEEEeCCCeEEEEEcCCCcEEEE
Q 046394           48 PYTLDFTSSGRYMAAAGCKGYPYFYNRDGTE---LHCSKEHGEV-LKLQF------LLASINKLGQLRYQNVTMGEIVGN  117 (378)
Q Consensus        48 v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~-~~l~~------~l~s~~~d~~i~iwd~~~~~~~~~  117 (378)
                      ..++.|++.|..++++-.+|.+.+-+.+...   ++.++.|.-. ....|      ++.+||.|+.+..||++...   +
T Consensus       124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~---~  200 (339)
T KOG0280|consen  124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPK---T  200 (339)
T ss_pred             eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCc---c
Confidence            3478899999999999999999966643322   2357778755 66677      89999999999999998332   2


Q ss_pred             EecCCCCeeEEEEcCCCCEEEEEcCCCeeeecCCCEEEEEEec-CCCEEEEEECCCeEEEEEcCC-ceeeeee--cCCce
Q 046394          118 FWTGLGRTDVIRVNPFNGVVSLGHSGGTMLCHQGPVSALAFHP-NGHLMATSGKDCKIKIWDLRK-YEVLQTL--PGHAK  193 (378)
Q Consensus       118 ~~~~~~~v~~~~~s~~~~~l~~~~~d~~~~~h~~~v~~~~~sp-~g~~l~t~~~d~~i~iwd~~~-~~~~~~~--~~~i~  193 (378)
                      +..+..                       ..|...|.+|.-+| .+.+++||+.|-.|++||.|+ ++++..-  .+.|+
T Consensus       201 ~i~~n~-----------------------kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVW  257 (339)
T KOG0280|consen  201 FIWHNS-----------------------KVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVW  257 (339)
T ss_pred             eeeecc-----------------------eeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccceE
Confidence            211211                       25788899998887 688999999999999999995 8887766  68999


Q ss_pred             EEEEecCCCc-----------cccCC--CCCc---eEEEeeccCCcceeeeEEcCCCCeEEEec
Q 046394          194 TLDFSRKDSG-----------DFSGS--HNYN---RYMGYSMVKGYQIGKVSFRPYEDVLGIGH  241 (378)
Q Consensus       194 ~~~~sp~g~~-----------~~~~~--~~~~---~~~~~~~~~~~~v~~~~~sp~g~~l~~~~  241 (378)
                      .+.++|.-..           .+.+.  ...+   ....+.. |.+-+..-.|.....+||+++
T Consensus       258 Ri~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~-hdSl~YG~DWd~~~~~lATCs  320 (339)
T KOG0280|consen  258 RIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKI-HDSLCYGGDWDSKDSFLATCS  320 (339)
T ss_pred             EEEecchhhhHHHHHHHhcCceEEEecccccchheeeecccc-ccceeeccccccccceeeeee
Confidence            9999996441           11111  1111   2333444 555566666755555666654

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.21  E-value=1e-08  Score=94.37  Aligned_cols=180  Identities=13%  Similarity=0.037  Sum_probs=110.2

Q ss_pred             eeeeeecccceeeEEeecCCCCceEEEEcCCCCEE---EEEeCCC--cEEEEeCCCCeEEeeccCCCe-eEEEE-----E
Q 046394           26 IAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYM---AAAGCKG--YPYFYNRDGTELHCSKEHGEV-LKLQF-----L   94 (378)
Q Consensus        26 ~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l---~~~~~dg--~i~iwd~~~~~~~~~~~~~~~-~~l~~-----~   94 (378)
                      .|.+.|...+. ...+......+.+-+|||||+.+   ++...+|  .|++.++.+.....+....+. ....|     .
T Consensus       166 ~l~~~d~dG~~-~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~  244 (428)
T PRK01029        166 ELWSVDYDGQN-LRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKL  244 (428)
T ss_pred             eEEEEcCCCCC-ceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCCE
Confidence            56667765443 34555555667788999999752   2444443  577778766554444443333 55666     3


Q ss_pred             EE-EEeC----CCeEEEEEcCCC---cEEEEEecCCCCeeEEEEcCCCCEEEEEc-CCCe-----------------eee
Q 046394           95 LA-SINK----LGQLRYQNVTMG---EIVGNFWTGLGRTDVIRVNPFNGVVSLGH-SGGT-----------------MLC  148 (378)
Q Consensus        95 l~-s~~~----d~~i~iwd~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~-----------------~~~  148 (378)
                      |+ +...    +-.+.+|++..+   ................+|+|||+.|+..+ .++.                 +..
T Consensus       245 Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~  324 (428)
T PRK01029        245 LAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTK  324 (428)
T ss_pred             EEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEecc
Confidence            33 3322    223444777653   33333322234456789999999777655 3443                 112


Q ss_pred             cCCCEEEEEEecCCCEEEEEECC---CeEEEEEcCCceeeeee--cCCceEEEEecCCCcccc
Q 046394          149 HQGPVSALAFHPNGHLMATSGKD---CKIKIWDLRKYEVLQTL--PGHAKTLDFSRKDSGDFS  206 (378)
Q Consensus       149 h~~~v~~~~~sp~g~~l~t~~~d---~~i~iwd~~~~~~~~~~--~~~i~~~~~sp~g~~~~~  206 (378)
                      +...+...+|||||++|+..+.+   ..|.+||+.+++.....  ...+..+.|+|||...++
T Consensus       325 ~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f  387 (428)
T PRK01029        325 KYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVY  387 (428)
T ss_pred             CCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEE
Confidence            23456678999999998876643   37999999888764333  245678899999986554

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.19  E-value=4.6e-09  Score=97.25  Aligned_cols=172  Identities=15%  Similarity=0.134  Sum_probs=109.2

Q ss_pred             ceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEE-EeCCC--cEEEEeCCCCeEEeeccCCCe-eEEEE-----EE
Q 046394           25 AIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAA-AGCKG--YPYFYNRDGTELHCSKEHGEV-LKLQF-----LL   95 (378)
Q Consensus        25 ~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~-~~~dg--~i~iwd~~~~~~~~~~~~~~~-~~l~~-----~l   95 (378)
                      ..+.+||+.+++.. .+....+...+++|||||+.|+. .+.+|  .|++||..+..+..+..+... ..+.|     .+
T Consensus       228 ~~l~~~dl~~g~~~-~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l  306 (433)
T PRK04922        228 SAIYVQDLATGQRE-LVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSI  306 (433)
T ss_pred             cEEEEEECCCCCEE-EeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEE
Confidence            46889999887653 33333445568899999997764 45555  599999766666667666555 67788     45


Q ss_pred             EEEe-CCCe--EEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe---------------eeecCCCEEEEE
Q 046394           96 ASIN-KLGQ--LRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT---------------MLCHQGPVSALA  157 (378)
Q Consensus        96 ~s~~-~d~~--i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~---------------~~~h~~~v~~~~  157 (378)
                      +.++ .++.  |+++|+.+++... +.........++|+|+|+.|+..+.++.               ...+........
T Consensus       307 ~f~sd~~g~~~iy~~dl~~g~~~~-lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt~~~~~~~p~  385 (433)
T PRK04922        307 YFTSDRGGRPQIYRVAASGGSAER-LTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRTLTPGSLDESPS  385 (433)
T ss_pred             EEEECCCCCceEEEEECCCCCeEE-eecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEECCCCCCCCCce
Confidence            4444 4444  7777777766433 2233344557899999998887654331               111222345678


Q ss_pred             EecCCCEEEEEECC---CeEEEEEcCCceeeeee---cCCceEEEEec
Q 046394          158 FHPNGHLMATSGKD---CKIKIWDLRKYEVLQTL---PGHAKTLDFSR  199 (378)
Q Consensus       158 ~sp~g~~l~t~~~d---~~i~iwd~~~~~~~~~~---~~~i~~~~~sp  199 (378)
                      |+|||++++..+.+   +.|.++|+.. .....+   .+.+..++|+|
T Consensus       386 ~spdG~~i~~~s~~~g~~~L~~~~~~g-~~~~~l~~~~g~~~~p~wsp  432 (433)
T PRK04922        386 FAPNGSMVLYATREGGRGVLAAVSTDG-RVRQRLVSADGEVREPAWSP  432 (433)
T ss_pred             ECCCCCEEEEEEecCCceEEEEEECCC-CceEEcccCCCCCCCCccCC
Confidence            99999988776653   3577788743 333333   24455566655

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.16  E-value=3.7e-10  Score=96.49  Aligned_cols=140  Identities=16%  Similarity=0.212  Sum_probs=105.1

Q ss_pred             CceEEEEcCCCCEEEEEeCCCcEEEEeCCCCe-----EEeeccCCCeeEEEE--------EEEEEeCCCeEEEEEcCCCc
Q 046394           47 GPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTE-----LHCSKEHGEVLKLQF--------LLASINKLGQLRYQNVTMGE  113 (378)
Q Consensus        47 ~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~-----~~~~~~~~~~~~l~~--------~l~s~~~d~~i~iwd~~~~~  113 (378)
                      .+..+..+|.+++||++..+....+++..+.+     +..+.....++++.|        ....++....+.+|....+.
T Consensus        64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~  143 (390)
T KOG3914|consen   64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR  143 (390)
T ss_pred             cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccC
Confidence            34566778899999999888887777732222     222333333355555        33345566677788776655


Q ss_pred             EEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe---------------eeecCCCEEEEEEecCCCEEEEEECCCeEEEEE
Q 046394          114 IVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT---------------MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWD  178 (378)
Q Consensus       114 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~---------------~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd  178 (378)
                      +.. +-+|-..++.++|+||+++|+++..|..               ..||..-|..+++-++ ..|+++|.|++|++||
T Consensus       144 ~~~-~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd  221 (390)
T KOG3914|consen  144 CEP-ILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRLWD  221 (390)
T ss_pred             cch-hhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcEEEEe
Confidence            443 3478899999999999999999999988               6789999999999765 4589999999999999


Q ss_pred             cCCceeeeee
Q 046394          179 LRKYEVLQTL  188 (378)
Q Consensus       179 ~~~~~~~~~~  188 (378)
                      +.+|+++.++
T Consensus       222 ~~sgk~L~t~  231 (390)
T KOG3914|consen  222 ITSGKLLDTC  231 (390)
T ss_pred             cccCCccccc
Confidence            9999999887

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.16  E-value=8.6e-10  Score=104.84  Aligned_cols=159  Identities=23%  Similarity=0.262  Sum_probs=116.3

Q ss_pred             cceeeeeecccceeeEEeecCC-CCceEEEEc-CCCCEEEEEeCCCcEEEEeCC----CCeEEeeccCCCe---eEEEE-
Q 046394           24 EAIAREVDILSSRNQYDIMLPE-LGPYTLDFT-SSGRYMAAAGCKGYPYFYNRD----GTELHCSKEHGEV---LKLQF-   93 (378)
Q Consensus        24 ~~~i~~~d~~~~~~~~~l~~~~-~~v~~~~~s-p~g~~l~~~~~dg~i~iwd~~----~~~~~~~~~~~~~---~~l~~-   93 (378)
                      -..|++||+....++..+...+ ..|+++.-+ +.|+.|++|..||.|++||..    ...+...+.|...   ..+.+ 
T Consensus      1186 ~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq 1265 (1387)
T KOG1517|consen 1186 VRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQ 1265 (1387)
T ss_pred             eeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEee
Confidence            4678888998888888876543 456666554 346899999999999999932    2356667777753   55666 


Q ss_pred             -----EEEEEeCCCeEEEEEcCCCcE--EEEEecC--CC-CeeEEEEcCCCCEEEEEcCCCe------------------
Q 046394           94 -----LLASINKLGQLRYQNVTMGEI--VGNFWTG--LG-RTDVIRVNPFNGVVSLGHSGGT------------------  145 (378)
Q Consensus        94 -----~l~s~~~d~~i~iwd~~~~~~--~~~~~~~--~~-~v~~~~~s~~~~~l~~~~~d~~------------------  145 (378)
                           .+++|+.||.|++||++....  ..++..|  .+ ..+++..+++...+|+|+..-.                  
T Consensus      1266 ~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~q~ikIy~~~G~~l~~~k~n~~ 1345 (1387)
T KOG1517|consen 1266 RQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSAQLIKIYSLSGEQLNIIKYNPG 1345 (1387)
T ss_pred             cCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCcceEEEEecChhhhcccccCcc
Confidence                 699999999999999987421  1122222  13 5889999999999999986222                  


Q ss_pred             -eeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCc
Q 046394          146 -MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKY  182 (378)
Q Consensus       146 -~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~  182 (378)
                       +....+.+.|++|+|.--.+|.|+.|.+|.||.....
T Consensus      1346 F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1346 FMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred             cccCcCCCcceeeecchhHhhhhccCCceEEEeecCCc
Confidence             2223466789999998888899999999999976543

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.16  E-value=8.5e-09  Score=92.52  Aligned_cols=222  Identities=11%  Similarity=0.114  Sum_probs=127.5

Q ss_pred             ceeeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeC-CCcEEEEe-CCCCeEEeeccCC------
Q 046394           15 VEKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGC-KGYPYFYN-RDGTELHCSKEHG------   86 (378)
Q Consensus        15 ~~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~-dg~i~iwd-~~~~~~~~~~~~~------   86 (378)
                      ....|....++.+.++|+.+.+.+..+... ....++++|+||+++++++. .+.+.++| .+.+.+..+....      
T Consensus        48 gr~~yv~~rdg~vsviD~~~~~~v~~i~~G-~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~  126 (369)
T PF02239_consen   48 GRYLYVANRDGTVSVIDLATGKVVATIKVG-GNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGP  126 (369)
T ss_dssp             SSEEEEEETTSEEEEEETTSSSEEEEEE-S-SEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS
T ss_pred             CCEEEEEcCCCeEEEEECCcccEEEEEecC-CCcceEEEcCCCCEEEEEecCCCceeEeccccccceeeccccccccccc
Confidence            334666677899999999999999999875 56889999999999998764 88999999 5666676654321      


Q ss_pred             C--eeEEEE------EEEEEeCCCeEEEEEcCCCcEEE-EEecCCCCeeEEEEcCCCCEEEEEcCCCe------------
Q 046394           87 E--VLKLQF------LLASINKLGQLRYQNVTMGEIVG-NFWTGLGRTDVIRVNPFNGVVSLGHSGGT------------  145 (378)
Q Consensus        87 ~--~~~l~~------~l~s~~~d~~i~iwd~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~d~~------------  145 (378)
                      .  +.++..      ++++.-..+.|.+.|......+. .............|+|++++++++.....            
T Consensus       127 ~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~  206 (369)
T PF02239_consen  127 ESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKL  206 (369)
T ss_dssp             ---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEE
T ss_pred             CCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceE
Confidence            1  123332      44455555888888877654332 23234466788999999998877643222            


Q ss_pred             -------eeecCCCEEEE-------EEe--cCCCEEEEEECCCeEEEEEcCCceeeeee--cCCceEEEEecCCCcccc-
Q 046394          146 -------MLCHQGPVSAL-------AFH--PNGHLMATSGKDCKIKIWDLRKYEVLQTL--PGHAKTLDFSRKDSGDFS-  206 (378)
Q Consensus       146 -------~~~h~~~v~~~-------~~s--p~g~~l~t~~~d~~i~iwd~~~~~~~~~~--~~~i~~~~~sp~g~~~~~-  206 (378)
                             -..|..++..+       .|.  ..+...++.-....+.+||..+.+.+.++  .+..--+..+|++.+... 
T Consensus       207 v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd  286 (369)
T PF02239_consen  207 VALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVD  286 (369)
T ss_dssp             EEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE
T ss_pred             EEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCcceeecCCCCccEEee
Confidence                   11233333332       121  12233323333445678899999999988  444477788999886332 


Q ss_pred             -------------CCCCCceEEEeeccCCcceeeeEEcCCCCeE
Q 046394          207 -------------GSHNYNRYMGYSMVKGYQIGKVSFRPYEDVL  237 (378)
Q Consensus       207 -------------~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l  237 (378)
                                   +..+......+....+..+..+.|+++|+.+
T Consensus       287 ~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v  330 (369)
T PF02239_consen  287 TFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEV  330 (369)
T ss_dssp             -TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEE
T ss_pred             ccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEE
Confidence                         2333333333321123348899999999854

...

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.15  E-value=3.8e-07  Score=81.86  Aligned_cols=224  Identities=13%  Similarity=0.096  Sum_probs=132.9

Q ss_pred             ceeeeeec--cccee--eEEeecCCCCceEEEEcCCCCEEEEEeC----CCcEEEEeCCC--CeE---Eeec-cCCCeeE
Q 046394           25 AIAREVDI--LSSRN--QYDIMLPELGPYTLDFTSSGRYMAAAGC----KGYPYFYNRDG--TEL---HCSK-EHGEVLK   90 (378)
Q Consensus        25 ~~i~~~d~--~~~~~--~~~l~~~~~~v~~~~~sp~g~~l~~~~~----dg~i~iwd~~~--~~~---~~~~-~~~~~~~   90 (378)
                      +-|.+|.+  .+++.  +..+. ....+..++++|++++|++...    +|.|..|....  ..+   .... ....+..
T Consensus        13 ~gI~~~~~d~~~g~l~~~~~~~-~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~   91 (345)
T PF10282_consen   13 GGIYVFRFDEETGTLTLVQTVA-EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCH   91 (345)
T ss_dssp             TEEEEEEEETTTTEEEEEEEEE-ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEE
T ss_pred             CcEEEEEEcCCCCCceEeeeec-CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEE
Confidence            55666666  44432  22222 2356778999999999998876    56888888432  232   2222 2223356


Q ss_pred             EEE-----EEE-EEeCCCeEEEEEcCC-CcEEEE---Ee----------cCCCCeeEEEEcCCCCEEEEEcCCCe-----
Q 046394           91 LQF-----LLA-SINKLGQLRYQNVTM-GEIVGN---FW----------TGLGRTDVIRVNPFNGVVSLGHSGGT-----  145 (378)
Q Consensus        91 l~~-----~l~-s~~~d~~i~iwd~~~-~~~~~~---~~----------~~~~~v~~~~~s~~~~~l~~~~~d~~-----  145 (378)
                      +++     +++ +.-.+|.|.++++.. |.....   +.          .....+.++.++|+++++++......     
T Consensus        92 i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~  171 (345)
T PF10282_consen   92 IAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVY  171 (345)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEE
T ss_pred             EEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEE
Confidence            666     444 444689999999986 443222   21          11245789999999998887654332     


Q ss_pred             -e--------------eecCCCEEEEEEecCCCEEEEE-ECCCeEEEEEcC--Ccee--eeee---c------CCceEEE
Q 046394          146 -M--------------LCHQGPVSALAFHPNGHLMATS-GKDCKIKIWDLR--KYEV--LQTL---P------GHAKTLD  196 (378)
Q Consensus       146 -~--------------~~h~~~v~~~~~sp~g~~l~t~-~~d~~i~iwd~~--~~~~--~~~~---~------~~i~~~~  196 (378)
                       +              .........++|+|+|+++... -.++.|.+|++.  ++..  +..+   +      .....|.
T Consensus       172 ~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~  251 (345)
T PF10282_consen  172 DIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIA  251 (345)
T ss_dssp             EE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEE
T ss_pred             EEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEE
Confidence             1              1122446789999999987555 467899999998  4433  3333   1      1467899


Q ss_pred             EecCCCccccC-----------C--C--CCceEEEeeccCCcceeeeEEcCCCCeEEEecC-CCeEEEEE
Q 046394          197 FSRKDSGDFSG-----------S--H--NYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHS-MGVSGILI  250 (378)
Q Consensus       197 ~sp~g~~~~~~-----------~--~--~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~-~g~~~~~~  250 (378)
                      ++|||++....           .  .  ....+..... .+.....+.++|+|++|+++.. ++.+.+|.
T Consensus       252 ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~-~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~  320 (345)
T PF10282_consen  252 ISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPT-GGKFPRHFAFSPDGRYLYVANQDSNTVSVFD  320 (345)
T ss_dssp             E-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEE-SSSSEEEEEE-TTSSEEEEEETTTTEEEEEE
T ss_pred             EecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeC-CCCCccEEEEeCCCCEEEEEecCCCeEEEEE
Confidence            99999962221           1  1  1122222322 3455788999999998887764 44444443

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.12  E-value=3.2e-08  Score=87.30  Aligned_cols=106  Identities=11%  Similarity=0.147  Sum_probs=64.4

Q ss_pred             ecCCCEEEEEEecCCCEEEEEE--CCCeEEEEEcCCceeeeee-cCCceEEEEecCCCcc-------------ccCCCCC
Q 046394          148 CHQGPVSALAFHPNGHLMATSG--KDCKIKIWDLRKYEVLQTL-PGHAKTLDFSRKDSGD-------------FSGSHNY  211 (378)
Q Consensus       148 ~h~~~v~~~~~sp~g~~l~t~~--~d~~i~iwd~~~~~~~~~~-~~~i~~~~~sp~g~~~-------------~~~~~~~  211 (378)
                      ...++|..++|+|.++.+++++  .+..+.++|++.. +...+ ...=+.+.|||.+++.             +|+....
T Consensus       272 ~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~r  350 (561)
T COG5354         272 DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGR  350 (561)
T ss_pred             cccccceeeeecccCCceeEEecccccceeecccccc-eEEecCCcccccccccCcccEEEEecCCccccceEEeccCCc
Confidence            3467888899999887776655  5678888888765 44444 5666778888877763             3332222


Q ss_pred             ceEE-EeeccCCcceeeeEEcCCCCeEEEecCCCeEEEEEcCCCCcccccccC
Q 046394          212 NRYM-GYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILIPGSGEPNFDSWVA  263 (378)
Q Consensus       212 ~~~~-~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~~~s~d~~i~~w~~  263 (378)
                      -... .+.+   ....-+.|+|||+++.+....-.      ---|..+.+|++
T Consensus       351 f~~~~~~~~---~n~s~~~wspd~qF~~~~~ts~k------~~~Dn~i~l~~v  394 (561)
T COG5354         351 FKVAGAFNG---LNTSYCDWSPDGQFYDTDTTSEK------LRVDNSIKLWDV  394 (561)
T ss_pred             eEEEEEeec---CCceEeeccCCceEEEecCCCcc------cccCcceEEEEe
Confidence            2211 3322   23445678999987765544321      123566666665

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.11  E-value=1.6e-09  Score=90.90  Aligned_cols=204  Identities=12%  Similarity=0.096  Sum_probs=136.7

Q ss_pred             CCceEEEEcCCCCEEEEEeCCCcEEEEeCCCC------eEEeeccCCC-------------eeEEEE-------EEEEEe
Q 046394           46 LGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGT------ELHCSKEHGE-------------VLKLQF-------LLASIN   99 (378)
Q Consensus        46 ~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~------~~~~~~~~~~-------------~~~l~~-------~l~s~~   99 (378)
                      .-+.++.|...|.+||||..+|.|.++..+..      ....++.|..             ++.+.|       .++..+
T Consensus        26 diis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlst  105 (433)
T KOG1354|consen   26 DIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLST  105 (433)
T ss_pred             cceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEec
Confidence            45789999999999999999999999983211      1233444432             244566       677778


Q ss_pred             CCCeEEEEEcCCCcE-----------------------------------EEEE-ecCCCCeeEEEEcCCCCEEEEEcCC
Q 046394          100 KLGQLRYQNVTMGEI-----------------------------------VGNF-WTGLGRTDVIRVNPFNGVVSLGHSG  143 (378)
Q Consensus       100 ~d~~i~iwd~~~~~~-----------------------------------~~~~-~~~~~~v~~~~~s~~~~~l~~~~~d  143 (378)
                      .|.+|++|-+.....                                   .+.+ ..|.-.|+++.++.|...++++.+-
T Consensus       106 NdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSADdL  185 (433)
T KOG1354|consen  106 NDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSADDL  185 (433)
T ss_pred             CCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeeccce
Confidence            999999998753211                                   0001 1345568899999999999998876


Q ss_pred             Ce----------------eeec-----CCCEEEEEEec-CCCEEEEEECCCeEEEEEcCCceee------ee--------
Q 046394          144 GT----------------MLCH-----QGPVSALAFHP-NGHLMATSGKDCKIKIWDLRKYEVL------QT--------  187 (378)
Q Consensus       144 ~~----------------~~~h-----~~~v~~~~~sp-~g~~l~t~~~d~~i~iwd~~~~~~~------~~--------  187 (378)
                      ..                +..+     ..-|++..|+| ..+.|+-.+..|+|++-|+|...+.      ..        
T Consensus       186 RINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~r  265 (433)
T KOG1354|consen  186 RINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSR  265 (433)
T ss_pred             eeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcch
Confidence            66                1122     23477888999 6788999999999999999953221      11        


Q ss_pred             -e----cCCceEEEEecCCCc---------cccCC-CCCceEEEeeccCC------------cce---eeeEEcCCCCeE
Q 046394          188 -L----PGHAKTLDFSRKDSG---------DFSGS-HNYNRYMGYSMVKG------------YQI---GKVSFRPYEDVL  237 (378)
Q Consensus       188 -~----~~~i~~~~~sp~g~~---------~~~~~-~~~~~~~~~~~~~~------------~~v---~~~~~sp~g~~l  237 (378)
                       +    -..|..+.||++|++         .+|+. ....++.++.. |.            ..|   ..++|+.++.++
T Consensus       266 sffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~v-h~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v  344 (433)
T KOG1354|consen  266 SFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPV-HEYLRSKLCSLYENDAIFDKFECSWSGNDSYV  344 (433)
T ss_pred             hhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCCcceEEee-hHhHHHHHHHHhhccchhheeEEEEcCCcceE
Confidence             1    246788999999997         56665 33344444443 21            112   456788887677


Q ss_pred             EEecCCCeEEEEE
Q 046394          238 GIGHSMGVSGILI  250 (378)
Q Consensus       238 ~~~~~~g~~~~~~  250 (378)
                      ++|+.....+++-
T Consensus       345 ~TGsy~n~frvf~  357 (433)
T KOG1354|consen  345 MTGSYNNVFRVFN  357 (433)
T ss_pred             ecccccceEEEec
Confidence            7666666555543

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.09  E-value=2.4e-09  Score=95.11  Aligned_cols=174  Identities=13%  Similarity=0.125  Sum_probs=121.8

Q ss_pred             ceeeEEEeccceeeeeecccceeeEEee-cCCCCceEEEEcCC--CCEEEEEeCCCcEEEEeCCC-----------CeEE
Q 046394           15 VEKTWRIKQEAIAREVDILSSRNQYDIM-LPELGPYTLDFTSS--GRYMAAAGCKGYPYFYNRDG-----------TELH   80 (378)
Q Consensus        15 ~~~~~~~~~~~~i~~~d~~~~~~~~~l~-~~~~~v~~~~~sp~--g~~l~~~~~dg~i~iwd~~~-----------~~~~   80 (378)
                      ++-.++.++|-.+-|||....+.++.+. +|...|+|+.|-|.  .+.+++|..|..|+++|++.           ...+
T Consensus        62 G~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~  141 (758)
T KOG1310|consen   62 GELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTR  141 (758)
T ss_pred             CCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhh
Confidence            3445566677888899999888888874 79999999999994  46889999999999999642           2234


Q ss_pred             eeccCCCe-eEEEE------EEEEEeCCCeEEEEEcCCCcE-------E---EEEecCCCCeeEEEEcCCC-CEEEEEcC
Q 046394           81 CSKEHGEV-LKLQF------LLASINKLGQLRYQNVTMGEI-------V---GNFWTGLGRTDVIRVNPFN-GVVSLGHS  142 (378)
Q Consensus        81 ~~~~~~~~-~~l~~------~l~s~~~d~~i~iwd~~~~~~-------~---~~~~~~~~~v~~~~~s~~~-~~l~~~~~  142 (378)
                      .+..|... ..++.      .+.+++.||+|+-+|++....       .   ..+....-...|++++|.. .+|++|+.
T Consensus       142 ~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgs  221 (758)
T KOG1310|consen  142 CWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGS  221 (758)
T ss_pred             hhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCC
Confidence            45556542 33333      788999999999999976321       1   1111122346789999977 57788877


Q ss_pred             CCe---------------------------------eeecC-----------CCEEEEEEecCCCEEEEEECCCeEEEEE
Q 046394          143 GGT---------------------------------MLCHQ-----------GPVSALAFHPNGHLMATSGKDCKIKIWD  178 (378)
Q Consensus       143 d~~---------------------------------~~~h~-----------~~v~~~~~sp~g~~l~t~~~d~~i~iwd  178 (378)
                      +--                                 ..+|.           -.++-++|+|+|.-|+..-..-.|+++|
T Consensus       222 dpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfd  301 (758)
T KOG1310|consen  222 DPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFD  301 (758)
T ss_pred             CchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEe
Confidence            654                                 11121           1146678999998877666666899999


Q ss_pred             cCCceeeeee
Q 046394          179 LRKYEVLQTL  188 (378)
Q Consensus       179 ~~~~~~~~~~  188 (378)
                      +..++....+
T Consensus       302 vn~~~~~~~y  311 (758)
T KOG1310|consen  302 VNEDKSPTPY  311 (758)
T ss_pred             ecCCCCceee
Confidence            9877665444

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.09  E-value=4e-09  Score=89.91  Aligned_cols=139  Identities=8%  Similarity=0.042  Sum_probs=87.5

Q ss_pred             CCCCeeecCCceeeEEEeccceeeeeecccceeeEEeec-CCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEeec
Q 046394            5 SEGGYLEAEGVEKTWRIKQEAIAREVDILSSRNQYDIML-PELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTELHCSK   83 (378)
Q Consensus         5 ~~~~~l~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~l~~-~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~~   83 (378)
                      ++..+|+++|.+.-.++|.-..+-+  -.+.+.+..... |...|+|++|....+.+++|+.+++|...|+......-..
T Consensus        66 ~N~~~L~SGGDD~~~~~W~~de~~~--~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~  143 (609)
T KOG4227|consen   66 HNDRFLASGGDDMHGRVWNVDELMV--RKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVA  143 (609)
T ss_pred             cCCeEEeecCCcceeeeechHHHHh--hcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeee
Confidence            4455666666665555555222111  122233333332 4478999999998899999999999999996554443333


Q ss_pred             cCCC----eeEEEE-----EEEEEeCCCeEEEEEcCCCc-EEE--EEecCCCCeeEEEEcCCC-CEEEEEcCCCe
Q 046394           84 EHGE----VLKLQF-----LLASINKLGQLRYQNVTMGE-IVG--NFWTGLGRTDVIRVNPFN-GVVSLGHSGGT  145 (378)
Q Consensus        84 ~~~~----~~~l~~-----~l~s~~~d~~i~iwd~~~~~-~~~--~~~~~~~~v~~~~~s~~~-~~l~~~~~d~~  145 (378)
                      .|..    +..+..     .|++.+.++.|.+||.+..+ ...  ...........+-|+|.. .+|++++..+.
T Consensus       144 ~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G  218 (609)
T KOG4227|consen  144 NENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGG  218 (609)
T ss_pred             cccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCC
Confidence            3332    355544     88999999999999998755 222  222344567778888866 45666555443

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.08  E-value=2.6e-08  Score=92.16  Aligned_cols=176  Identities=14%  Similarity=0.068  Sum_probs=110.2

Q ss_pred             cEEEEeCCCCeEEeeccCCCe-eEEEE-----EEEEEeC---CCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEE
Q 046394           68 YPYFYNRDGTELHCSKEHGEV-LKLQF-----LLASINK---LGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVS  138 (378)
Q Consensus        68 ~i~iwd~~~~~~~~~~~~~~~-~~l~~-----~l~s~~~---d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  138 (378)
                      .|.++|.++.....+..+... ....|     .++.++.   ...|++||+.+++.... ....+.+.+++|+|||+.|+
T Consensus       171 ~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~-~~~~~~~~~~~~spDg~~l~  249 (417)
T TIGR02800       171 ELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKV-ASFPGMNGAPAFSPDGSKLA  249 (417)
T ss_pred             eEEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEe-ecCCCCccceEECCCCCEEE
Confidence            688888777666666665543 66677     4444433   25799999988865433 33445667799999998776


Q ss_pred             E-EcCCCe---------------eeecCCCEEEEEEecCCCEEEEEECC-C--eEEEEEcCCceeeeee--cCCceEEEE
Q 046394          139 L-GHSGGT---------------MLCHQGPVSALAFHPNGHLMATSGKD-C--KIKIWDLRKYEVLQTL--PGHAKTLDF  197 (378)
Q Consensus       139 ~-~~~d~~---------------~~~h~~~v~~~~~sp~g~~l~t~~~d-~--~i~iwd~~~~~~~~~~--~~~i~~~~~  197 (378)
                      . .+.++.               +..+.......+|+|+|++|+.++.. +  .|.++|+.++......  ...+..+.|
T Consensus       250 ~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~  329 (417)
T TIGR02800       250 VSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSW  329 (417)
T ss_pred             EEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCeEE
Confidence            4 343332               22333444577899999998876643 3  6888888776643322  355678899


Q ss_pred             ecCCCccccCCCCC--ceEEEeecc--------CCcceeeeEEcCCCCeEEEecCCC
Q 046394          198 SRKDSGDFSGSHNY--NRYMGYSMV--------KGYQIGKVSFRPYEDVLGIGHSMG  244 (378)
Q Consensus       198 sp~g~~~~~~~~~~--~~~~~~~~~--------~~~~v~~~~~sp~g~~l~~~~~~g  244 (378)
                      +|+|.+.++.....  ..+..+...        .........|+|||.+|+.++.++
T Consensus       330 spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~p~~spdg~~l~~~~~~~  386 (417)
T TIGR02800       330 SPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTDTGLDESPSFAPNGRMILYATTRG  386 (417)
T ss_pred             CCCCCEEEEEEccCCceEEEEEeCCCCCeEEccCCCCCCCceECCCCCEEEEEEeCC
Confidence            99998755433221  111121110        111244568999999887766654

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.07  E-value=3.6e-09  Score=94.42  Aligned_cols=162  Identities=11%  Similarity=0.112  Sum_probs=121.8

Q ss_pred             eEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCC-CCeEEee------ccCC----
Q 046394           18 TWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRD-GTELHCS------KEHG----   86 (378)
Q Consensus        18 ~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~-~~~~~~~------~~~~----   86 (378)
                      .|.+.....|+-+++..|.-+..+....++++++..++...+|++|+.+|.|-.||.. ...+..+      ..|.    
T Consensus       148 ly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~  227 (703)
T KOG2321|consen  148 LYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDA  227 (703)
T ss_pred             EEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccc
Confidence            3444455566777888888888888877899999999998899999999999999943 2222222      2222    


Q ss_pred             --CeeEEEE-----EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCeeeecCCCEEEEEEe
Q 046394           87 --EVLKLQF-----LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGTMLCHQGPVSALAFH  159 (378)
Q Consensus        87 --~~~~l~~-----~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~~~~h~~~v~~~~~s  159 (378)
                        .++++.|     .+++|..+|.+.|||+++.+++..-. |                          +..-+|..+.|.
T Consensus       228 ~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kd-h--------------------------~~e~pi~~l~~~  280 (703)
T KOG2321|consen  228 APSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKD-H--------------------------GYELPIKKLDWQ  280 (703)
T ss_pred             cCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecc-c--------------------------CCccceeeeccc
Confidence              1488999     89999999999999999988876542 2                          345678888887


Q ss_pred             cC--CCEEEEEECCCeEEEEEcCCceeeeee--cCCceEEEEecCCCccccC
Q 046394          160 PN--GHLMATSGKDCKIKIWDLRKYEVLQTL--PGHAKTLDFSRKDSGDFSG  207 (378)
Q Consensus       160 p~--g~~l~t~~~d~~i~iwd~~~~~~~~~~--~~~i~~~~~sp~g~~~~~~  207 (378)
                      +.  ++.++|+ ....++|||-.+|+....+  ...++.+|+-|++-..+..
T Consensus       281 ~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~A  331 (703)
T KOG2321|consen  281 DTDQQNKVVSM-DKRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTA  331 (703)
T ss_pred             ccCCCceEEec-chHHhhhcccccCCceeeccccCCcCceeeecCCceEEEe
Confidence            74  3344444 4568999999999999888  4679999999987754443

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.06  E-value=8.5e-07  Score=78.14  Aligned_cols=224  Identities=13%  Similarity=0.048  Sum_probs=136.2

Q ss_pred             ceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeC----------CCcEEEEe-CCCCeEEeeccCCCe-----
Q 046394           25 AIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGC----------KGYPYFYN-RDGTELHCSKEHGEV-----   88 (378)
Q Consensus        25 ~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~----------dg~i~iwd-~~~~~~~~~~~~~~~-----   88 (378)
                      +.+.+.|..+++.+-.+... .....+ +||||+.|+++..          +..|.+|| .+...+..+.....+     
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G-~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~  104 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGG-FLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG  104 (352)
T ss_pred             ceEEEEECCCCEEEEEEEcc-CCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence            68999999999988888765 344455 9999998887765          67899999 566777666643321     


Q ss_pred             ---eEEEE-----EEEEEe--CCCeEEEEEcCCCcEEEEEecCCCC-------eeEEEEcCCCCEEEEEcCC-CeeeecC
Q 046394           89 ---LKLQF-----LLASIN--KLGQLRYQNVTMGEIVGNFWTGLGR-------TDVIRVNPFNGVVSLGHSG-GTMLCHQ  150 (378)
Q Consensus        89 ---~~l~~-----~l~s~~--~d~~i~iwd~~~~~~~~~~~~~~~~-------v~~~~~s~~~~~l~~~~~d-~~~~~h~  150 (378)
                         ..+++     +++...  .+..|.+.|+.+++.+..+......       -..+....||..+.....+ |....++
T Consensus       105 ~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~  184 (352)
T TIGR02658       105 TYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKP  184 (352)
T ss_pred             CccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEee
Confidence               23444     444333  3789999999999988887653211       1122334555544433322 2211111


Q ss_pred             CCEEE---------EEEec-CCCEEEEEECCCeEEEEEcCC-----ceeeeee----------cCCceEEEEecCCCccc
Q 046394          151 GPVSA---------LAFHP-NGHLMATSGKDCKIKIWDLRK-----YEVLQTL----------PGHAKTLDFSRKDSGDF  205 (378)
Q Consensus       151 ~~v~~---------~~~sp-~g~~l~t~~~d~~i~iwd~~~-----~~~~~~~----------~~~i~~~~~sp~g~~~~  205 (378)
                      ..+..         -.|.+ +|.++..... |+|.+.|+..     ...+..+          ++.+.-++++|+|.+.+
T Consensus       185 ~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~ly  263 (352)
T TIGR02658       185 TEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIY  263 (352)
T ss_pred             eeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEE
Confidence            11100         13455 7877766665 9999999643     3333332          22334589999887522


Q ss_pred             c--------------------CCCCCceEEEeeccCCcceeeeEEcCCCC-eEEEec-CCCeEEEEEcCC
Q 046394          206 S--------------------GSHNYNRYMGYSMVKGYQIGKVSFRPYED-VLGIGH-SMGVSGILIPGS  253 (378)
Q Consensus       206 ~--------------------~~~~~~~~~~~~~~~~~~v~~~~~sp~g~-~l~~~~-~~g~~~~~~~~s  253 (378)
                      .                    +..+.+.+.....  +..+..+.++|||+ .|.+.+ .++.+.++...+
T Consensus       264 V~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v--G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t  331 (352)
T TIGR02658       264 LLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL--GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAET  331 (352)
T ss_pred             EEecCCccccccCCCCEEEEEECCCCeEEEEEeC--CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcC
Confidence            2                    2334444444432  56788999999998 666555 456566665443

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.04  E-value=1.2e-08  Score=97.01  Aligned_cols=159  Identities=16%  Similarity=0.134  Sum_probs=92.7

Q ss_pred             CCCEEEEEeCCCcEEEEeCCC-CeEEeeccCCCe---eEEEE-------EEEEEeCCCeEEEEEcCCCcEEEEEecCCCC
Q 046394           56 SGRYMAAAGCKGYPYFYNRDG-TELHCSKEHGEV---LKLQF-------LLASINKLGQLRYQNVTMGEIVGNFWTGLGR  124 (378)
Q Consensus        56 ~g~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~---~~l~~-------~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~  124 (378)
                      +...++.++.+..+.+||... ..+..+.+....   .++-+       ++++|+.-+.|.+|+..-.+.-..+      
T Consensus        98 e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l------  171 (967)
T KOG0974|consen   98 ENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRL------  171 (967)
T ss_pred             hcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCccee------
Confidence            345677777888899999543 333344333332   22222       8888888899999987622211122      


Q ss_pred             eeEEEEcCCCCEEEEEcCCCeeeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeee-ee---cCCceEEEEecC
Q 046394          125 TDVIRVNPFNGVVSLGHSGGTMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQ-TL---PGHAKTLDFSRK  200 (378)
Q Consensus       125 v~~~~~s~~~~~l~~~~~d~~~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~-~~---~~~i~~~~~sp~  200 (378)
                                            .+|.+.|.++.|+.||++++++|.|.++++|++.+.+... +.   ...+..++|.|.
T Consensus       172 ----------------------~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n  229 (967)
T KOG0974|consen  172 ----------------------KGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN  229 (967)
T ss_pred             ----------------------cccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc
Confidence                                  3666666777776677777777777777777766655543 22   255666666665


Q ss_pred             CCc---------cccCCCCCceEEEeeccCCcceeeeEEcCCCCeEEEecCCC
Q 046394          201 DSG---------DFSGSHNYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMG  244 (378)
Q Consensus       201 g~~---------~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g  244 (378)
                       ..         .+|+. ....+..+..+....|..+...++...+++++.||
T Consensus       230 -~i~t~gedctcrvW~~-~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds  280 (967)
T KOG0974|consen  230 -RIITVGEDCTCRVWGV-NGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDS  280 (967)
T ss_pred             -eeEEeccceEEEEEec-ccceehhhhhhhhcceeEEEEcCCceEEEeeccCc
Confidence             22         33321 11222244443456788899888885555544444

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.04  E-value=1.3e-09  Score=108.79  Aligned_cols=175  Identities=13%  Similarity=0.172  Sum_probs=126.1

Q ss_pred             eEEEeccceeeeeecccceeeEEeec-CCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEeeccCCCe-eEEEE--
Q 046394           18 TWRIKQEAIAREVDILSSRNQYDIML-PELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTELHCSKEHGEV-LKLQF--   93 (378)
Q Consensus        18 ~~~~~~~~~i~~~d~~~~~~~~~l~~-~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~l~~--   93 (378)
                      .+...+|+.+++|....++.+..+.. ....|+.+.|+.+|+.+..+..||.+.+|.....+....+.|... ++..|  
T Consensus      2223 Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk~~~s~qchnk~~~Df~Fi~ 2302 (2439)
T KOG1064|consen 2223 YLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASPKPYTSWQCHNKALSDFRFIG 2302 (2439)
T ss_pred             EEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCCcceeccccCCccccceeeee
Confidence            34456777888888888877766643 237789999999999999999999999999888888889999876 88888  


Q ss_pred             -EEEEEe---CCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCeeeecCCCEEEEEEecCCCEEEEEE
Q 046394           94 -LLASIN---KLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGTMLCHQGPVSALAFHPNGHLMATSG  169 (378)
Q Consensus        94 -~l~s~~---~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~~~~h~~~v~~~~~sp~g~~l~t~~  169 (378)
                       .+++++   .++.+.+||..-.....-+                           ..+|.+.++++++-|.-+.|++||
T Consensus      2303 s~~~tag~s~d~~n~~lwDtl~~~~~s~v---------------------------~~~H~~gaT~l~~~P~~qllisgg 2355 (2439)
T KOG1064|consen 2303 SLLATAGRSSDNRNVCLWDTLLPPMNSLV---------------------------HTCHDGGATVLAYAPKHQLLISGG 2355 (2439)
T ss_pred             hhhhccccCCCCCcccchhcccCccccee---------------------------eeecCCCceEEEEcCcceEEEecC
Confidence             777765   4678999996321111111                           026778888888888888888888


Q ss_pred             CCCeEEEEEcCCceeeeee---cCCceEEEEecCCCccccCCCCCceEEEeec
Q 046394          170 KDCKIKIWDLRKYEVLQTL---PGHAKTLDFSRKDSGDFSGSHNYNRYMGYSM  219 (378)
Q Consensus       170 ~d~~i~iwd~~~~~~~~~~---~~~i~~~~~sp~g~~~~~~~~~~~~~~~~~~  219 (378)
                      .+|.|++||++..++++++   +..-.-+.=+..|...+|.......+..+..
T Consensus      2356 r~G~v~l~D~rqrql~h~~~~~~~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2356 RKGEVCLFDIRQRQLRHTFQALDTREYFVTGSSEGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred             CcCcEEEeehHHHHHHHHhhhhhhhheeeccCcccceEEEEccccchhhcCch
Confidence            8888888888887777777   2112222334456667777666655555544

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.01  E-value=1.1e-09  Score=95.22  Aligned_cols=153  Identities=9%  Similarity=0.033  Sum_probs=112.1

Q ss_pred             EEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeeccCCCe-eEEEE----
Q 046394           20 RIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKEHGEV-LKLQF----   93 (378)
Q Consensus        20 ~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~-~~l~~----   93 (378)
                      ..+..+.++..|+++|+.+..+....+.+..|+-+|-...+-+|...|+|.+|. ....++..+-+|.++ .++++    
T Consensus       226 ~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G  305 (545)
T KOG1272|consen  226 AASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGG  305 (545)
T ss_pred             ecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCC
Confidence            345567888889999999999988888999999999888999999999999999 456677788889887 99999    


Q ss_pred             -EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe---------------eeec--CCCEEE
Q 046394           94 -LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT---------------MLCH--QGPVSA  155 (378)
Q Consensus        94 -~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~---------------~~~h--~~~v~~  155 (378)
                       +++|+|.|..++|||++....+.++.. ..+...+++|..|-+.++-+..-.               +..|  .++|..
T Consensus       306 ~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~SqkglLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~  384 (545)
T KOG1272|consen  306 RYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKGLLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVED  384 (545)
T ss_pred             cEEeecccccceeEeeeccccccceeec-CCCccccccccccceeeecCCeeeeehhhhcCCCCCCcchhhhccCccccc
Confidence             999999999999999998776666554 445556666655543332221111               1111  235666


Q ss_pred             EEEecCCCEEEEEECCCe
Q 046394          156 LAFHPNGHLMATSGKDCK  173 (378)
Q Consensus       156 ~~~sp~g~~l~t~~~d~~  173 (378)
                      +.|.|-...|..|...|.
T Consensus       385 l~FcP~EDvLGIGH~~G~  402 (545)
T KOG1272|consen  385 LRFCPYEDVLGIGHAGGI  402 (545)
T ss_pred             ceeccHHHeeeccccCCc
Confidence            666665555655555553

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.00  E-value=1.2e-07  Score=84.64  Aligned_cols=182  Identities=13%  Similarity=0.191  Sum_probs=121.2

Q ss_pred             cceeeeeecccceeeEEeecCCCCceEEEEcCCC--CEEEE-----EeCCCcEEEEeCCCCeEEeeccCC---Ce--eEE
Q 046394           24 EAIAREVDILSSRNQYDIMLPELGPYTLDFTSSG--RYMAA-----AGCKGYPYFYNRDGTELHCSKEHG---EV--LKL   91 (378)
Q Consensus        24 ~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g--~~l~~-----~~~dg~i~iwd~~~~~~~~~~~~~---~~--~~l   91 (378)
                      .+.+++|++..- ....-..|..+|..+.+||.+  ..+|+     +|.-+.|+||...-...+...+..   ..  ..+
T Consensus       145 ~nev~f~~~~~f-~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm  223 (566)
T KOG2315|consen  145 SNEVQFYDLGSF-KTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQM  223 (566)
T ss_pred             cceEEEEecCCc-cceeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEE
Confidence            356777777662 233445567789999999974  34543     344568999985422222211111   11  445


Q ss_pred             EE--------EEEEEeCC---------CeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe---------
Q 046394           92 QF--------LLASINKL---------GQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT---------  145 (378)
Q Consensus        92 ~~--------~l~s~~~d---------~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~---------  145 (378)
                      .|        +|++..-|         .+++++++....++..+ ...++|.++.|+|+++.|++...---         
T Consensus       224 ~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L-~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr  302 (566)
T KOG2315|consen  224 KWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPL-LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR  302 (566)
T ss_pred             EeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEec-CCCCCceEEEECCCCCEEEEEEecccceEEEEcCC
Confidence            55        33333333         46888888733333333 35799999999999987776543211         


Q ss_pred             ----eeecCCCEEEEEEecCCCEEEEEECC---CeEEEEEcCCceeeeee-cCCceEEEEecCCCccccC
Q 046394          146 ----MLCHQGPVSALAFHPNGHLMATSGKD---CKIKIWDLRKYEVLQTL-PGHAKTLDFSRKDSGDFSG  207 (378)
Q Consensus       146 ----~~~h~~~v~~~~~sp~g~~l~t~~~d---~~i~iwd~~~~~~~~~~-~~~i~~~~~sp~g~~~~~~  207 (378)
                          +.-..++=+++-|+|.|++|+.+|-+   |.|-|||+.+.+++..+ -...+-..|+|||.+.+..
T Consensus       303 ~~~v~df~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~tt~~eW~PdGe~flTA  372 (566)
T KOG2315|consen  303 GKPVFDFPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANTTVFEWSPDGEYFLTA  372 (566)
T ss_pred             CCEeEeCCCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCCceEEEEcCCCcEEEEE
Confidence                33445677889999999999998865   58999999999999888 5677888999999985543

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.00  E-value=1.3e-06  Score=74.44  Aligned_cols=221  Identities=12%  Similarity=0.090  Sum_probs=138.1

Q ss_pred             cceeeeeecccceee---EEeecCCCCceEEEEcCCCCEEEEEeCC---CcEEEEeCCC--CeEEeecc---CCCe-eEE
Q 046394           24 EAIAREVDILSSRNQ---YDIMLPELGPYTLDFTSSGRYMAAAGCK---GYPYFYNRDG--TELHCSKE---HGEV-LKL   91 (378)
Q Consensus        24 ~~~i~~~d~~~~~~~---~~l~~~~~~v~~~~~sp~g~~l~~~~~d---g~i~iwd~~~--~~~~~~~~---~~~~-~~l   91 (378)
                      ..-|++|++.+..-.   ..+-.+.+.++=|+|+|++++|.++..+   |.|..|.++.  ..+..+..   .... ..+
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv   94 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV   94 (346)
T ss_pred             CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence            456788888744321   2233456788999999999999888654   6677766432  23332221   1122 555


Q ss_pred             EE-----EEEEEe-CCCeEEEEEcCC-CcEEE--EEecCCCC----------eeEEEEcCCCCEEEEEcC--CCe-----
Q 046394           92 QF-----LLASIN-KLGQLRYQNVTM-GEIVG--NFWTGLGR----------TDVIRVNPFNGVVSLGHS--GGT-----  145 (378)
Q Consensus        92 ~~-----~l~s~~-~d~~i~iwd~~~-~~~~~--~~~~~~~~----------v~~~~~s~~~~~l~~~~~--d~~-----  145 (378)
                      ++     +++++. ..|.|.++-+.. |.+..  ....|.+.          +.+..++|++++|++...  |..     
T Consensus        95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~  174 (346)
T COG2706          95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDL  174 (346)
T ss_pred             EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEc
Confidence            55     444444 468899998865 43321  22224343          888999999999887653  332     


Q ss_pred             -----------eeecCCCEEEEEEecCCCEEEEEE-CCCeEEEEEcCCc--e--eeeee---------cCCceEEEEecC
Q 046394          146 -----------MLCHQGPVSALAFHPNGHLMATSG-KDCKIKIWDLRKY--E--VLQTL---------PGHAKTLDFSRK  200 (378)
Q Consensus       146 -----------~~~h~~~v~~~~~sp~g~~l~t~~-~d~~i~iwd~~~~--~--~~~~~---------~~~i~~~~~sp~  200 (378)
                                 ...-......|.|+|++++....+ -+++|-+|.....  +  .+.++         ......|..+||
T Consensus       175 ~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~d  254 (346)
T COG2706         175 DDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPD  254 (346)
T ss_pred             ccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCC
Confidence                       112234567899999999976554 6899999998762  2  23333         245788999999


Q ss_pred             CCccccCCC-------------CC--ceEEEeeccCCcceeeeEEcCCCCeEEEecCCCe
Q 046394          201 DSGDFSGSH-------------NY--NRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGV  245 (378)
Q Consensus       201 g~~~~~~~~-------------~~--~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~  245 (378)
                      |++....-+             .+  ..+..... ++.....+.|+|+|++|++++.++.
T Consensus       255 GrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~t-eg~~PR~F~i~~~g~~Liaa~q~sd  313 (346)
T COG2706         255 GRFLYASNRGHDSIAVFSVDPDGGKLELVGITPT-EGQFPRDFNINPSGRFLIAANQKSD  313 (346)
T ss_pred             CCEEEEecCCCCeEEEEEEcCCCCEEEEEEEecc-CCcCCccceeCCCCCEEEEEccCCC
Confidence            997222111             11  11222222 4555788899999999888887653

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.00  E-value=7.8e-09  Score=98.34  Aligned_cols=163  Identities=17%  Similarity=0.114  Sum_probs=127.1

Q ss_pred             eeEEEeccceeeeeecccceeeEEeecCCCCc----eEEEEcCCCCEEEEEeCCCcEEEEeCCCCeE-EeeccCCCe-eE
Q 046394           17 KTWRIKQEAIAREVDILSSRNQYDIMLPELGP----YTLDFTSSGRYMAAAGCKGYPYFYNRDGTEL-HCSKEHGEV-LK   90 (378)
Q Consensus        17 ~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v----~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~-~~   90 (378)
                      +.+.+...+.+-+||...+...+.+.......    .-+-++++.-++++|+.-+.|.+|+...... ..+.+|.+. .+
T Consensus       101 ~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~  180 (967)
T KOG0974|consen  101 KIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFS  180 (967)
T ss_pred             eEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcceecccCCceEE
Confidence            44555667888888887776665555432222    2334566667899999999999999433333 358899987 88


Q ss_pred             EEE-----EEEEEeCCCeEEEEEcCCCcEEE-EEecCCCCeeEEEEcCCCCEEEEEcCCCe-------------eeecC-
Q 046394           91 LQF-----LLASINKLGQLRYQNVTMGEIVG-NFWTGLGRTDVIRVNPFNGVVSLGHSGGT-------------MLCHQ-  150 (378)
Q Consensus        91 l~~-----~l~s~~~d~~i~iwd~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~d~~-------------~~~h~-  150 (378)
                      +.|     +++++|.|.++++|++.+++... ..-+|...+..++|.|.  .+++++.|-+             +.+|. 
T Consensus       181 i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~~~l~~y~~h~g  258 (967)
T KOG0974|consen  181 IVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVNGTQLEVYDEHSG  258 (967)
T ss_pred             EEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEecccceehhhhhhhh
Confidence            988     99999999999999999987655 44478999999999999  9999999887             34443 


Q ss_pred             CCEEEEEEecCCCEEEEEECCCeEEEEEcCC
Q 046394          151 GPVSALAFHPNGHLMATSGKDCKIKIWDLRK  181 (378)
Q Consensus       151 ~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~  181 (378)
                      ..|..++..++...++|++.|+.+++||+..
T Consensus       259 ~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  259 KGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             cceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence            4578899988888999999999999999854

>PRK00178 tolB translocation protein TolB; Provisional

Probab=98.98  E-value=1.4e-07  Score=87.61  Aligned_cols=175  Identities=10%  Similarity=-0.007  Sum_probs=107.6

Q ss_pred             cEEEEeCCCCeEEeeccCCCe-eEEEE-----EEEEEeC-C--CeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEE
Q 046394           68 YPYFYNRDGTELHCSKEHGEV-LKLQF-----LLASINK-L--GQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVS  138 (378)
Q Consensus        68 ~i~iwd~~~~~~~~~~~~~~~-~~l~~-----~l~s~~~-d--~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  138 (378)
                      .|.++|.+|.....+..+... ....|     .|+..+. +  ..|.+||+.+++... +....+.+....|+|||+.|+
T Consensus       180 ~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la  258 (430)
T PRK00178        180 TLQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLA  258 (430)
T ss_pred             EEEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEE
Confidence            488888887766666555554 77788     4544432 2  469999998887543 333344556789999998776


Q ss_pred             E-EcCCCe---------------eeecCCCEEEEEEecCCCEEEEEEC-CC--eEEEEEcCCceeeeee--cCCceEEEE
Q 046394          139 L-GHSGGT---------------MLCHQGPVSALAFHPNGHLMATSGK-DC--KIKIWDLRKYEVLQTL--PGHAKTLDF  197 (378)
Q Consensus       139 ~-~~~d~~---------------~~~h~~~v~~~~~sp~g~~l~t~~~-d~--~i~iwd~~~~~~~~~~--~~~i~~~~~  197 (378)
                      . .+.++.               +..+........|+|||+.|+..+. ++  .|.++|+.+++.....  ........|
T Consensus       259 ~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~  338 (430)
T PRK00178        259 FVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRL  338 (430)
T ss_pred             EEEccCCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEE
Confidence            4 444443               2334445567899999998876664 33  6788888777653322  233456789


Q ss_pred             ecCCCccccCCCCCc--eEEEeec--------cCCcceeeeEEcCCCCeEEEecCC
Q 046394          198 SRKDSGDFSGSHNYN--RYMGYSM--------VKGYQIGKVSFRPYEDVLGIGHSM  243 (378)
Q Consensus       198 sp~g~~~~~~~~~~~--~~~~~~~--------~~~~~v~~~~~sp~g~~l~~~~~~  243 (378)
                      +|||.+.++......  .+..+..        ..........|+|||+.++..+.+
T Consensus       339 Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~~~~p~~spdg~~i~~~~~~  394 (430)
T PRK00178        339 SADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDTSLDESPSVAPNGTMLIYATRQ  394 (430)
T ss_pred             CCCCCEEEEEEccCCceEEEEEECCCCCEEEccCCCCCCCceECCCCCEEEEEEec
Confidence            999987444321111  1111111        011123356899999988776544

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.98  E-value=7.5e-08  Score=78.42  Aligned_cols=154  Identities=14%  Similarity=0.030  Sum_probs=102.9

Q ss_pred             EEEEcCC-----CCEEEEEeCCCcEEEEeCCCCeEEee--ccCCC-e------eEEEEEEEEEeCCCeEEEEEcCCCcEE
Q 046394           50 TLDFTSS-----GRYMAAAGCKGYPYFYNRDGTELHCS--KEHGE-V------LKLQFLLASINKLGQLRYQNVTMGEIV  115 (378)
Q Consensus        50 ~~~~sp~-----g~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~-~------~~l~~~l~s~~~d~~i~iwd~~~~~~~  115 (378)
                      .|.|.|.     ..+||.||..|...+|.......+..  ..|.. +      -...+-+..++.|.++++.++.-+..-
T Consensus        72 g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~  151 (344)
T KOG4532|consen   72 GMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNK  151 (344)
T ss_pred             cccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCccc
Confidence            4556552     24799999999999999654443332  22221 1      112225666778888888888654432


Q ss_pred             EEEecCCCCeeEEEEcCCCCEEEEEcCCCe-----------------eeecCCCEEEEEEecCCCEEEEEECCCeEEEEE
Q 046394          116 GNFWTGLGRTDVIRVNPFNGVVSLGHSGGT-----------------MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWD  178 (378)
Q Consensus       116 ~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~-----------------~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd  178 (378)
                      .......-.++++.+++|++++++.++...                 .....+.=.+..|+.....+|++..||++.|||
T Consensus       152 ~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~D  231 (344)
T KOG4532|consen  152 FAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYD  231 (344)
T ss_pred             ceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEE
Confidence            222222234789999999999998877665                 111122235678888888999999999999999


Q ss_pred             cCCc-eeeeee-------cCCceEEEEecCCCc
Q 046394          179 LRKY-EVLQTL-------PGHAKTLDFSRKDSG  203 (378)
Q Consensus       179 ~~~~-~~~~~~-------~~~i~~~~~sp~g~~  203 (378)
                      ++.. .+..+.       .+.+..+.|+|-|..
T Consensus       232 VR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~l  264 (344)
T KOG4532|consen  232 VRNMATPMAEISSTRPHHNGAFRVCRFSLYGLL  264 (344)
T ss_pred             ecccccchhhhcccCCCCCCceEEEEecCCCcc
Confidence            9974 343333       367899999997764

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.97  E-value=1.4e-07  Score=87.60  Aligned_cols=172  Identities=14%  Similarity=0.084  Sum_probs=102.8

Q ss_pred             ceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEE-EeCCCc--EEEEeCCCCeEEeeccCCCe-eEEEE------E
Q 046394           25 AIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAA-AGCKGY--PYFYNRDGTELHCSKEHGEV-LKLQF------L   94 (378)
Q Consensus        25 ~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~-~~~dg~--i~iwd~~~~~~~~~~~~~~~-~~l~~------~   94 (378)
                      ..|.+||+.+++.. .+....+.....+|||||+.|+. .+.+|.  |++||..+..+..+..+... ....|      +
T Consensus       242 ~~L~~~dl~tg~~~-~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I  320 (448)
T PRK04792        242 AEIFVQDIYTQVRE-KVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSL  320 (448)
T ss_pred             cEEEEEECCCCCeE-EecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEE
Confidence            35888898877643 22222234457899999998775 455664  77888776666666665544 66777      3


Q ss_pred             EEEEeCCC--eEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe------eeecC---------CCEEEEE
Q 046394           95 LASINKLG--QLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT------MLCHQ---------GPVSALA  157 (378)
Q Consensus        95 l~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~------~~~h~---------~~v~~~~  157 (378)
                      ++++..++  .|.++|+.+++... +..........+|+|||++|+..+..+.      +....         .......
T Consensus       321 ~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt~~~~d~~ps  399 (448)
T PRK04792        321 IFTSERGGKPQIYRVNLASGKVSR-LTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQVLTSTRLDESPS  399 (448)
T ss_pred             EEEECCCCCceEEEEECCCCCEEE-EecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEEccCCCCCCCce
Confidence            34443343  57777887776543 2222223345799999998877655332      11001         1122457


Q ss_pred             EecCCCEEEEEECC-C--eEEEEEcCCceeeeee---cCCceEEEEec
Q 046394          158 FHPNGHLMATSGKD-C--KIKIWDLRKYEVLQTL---PGHAKTLDFSR  199 (378)
Q Consensus       158 ~sp~g~~l~t~~~d-~--~i~iwd~~~~~~~~~~---~~~i~~~~~sp  199 (378)
                      |+|+|+.|+..+.+ +  .+.++|+ +|.....+   .+.+...+|||
T Consensus       400 ~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~g~~~~p~Wsp  446 (448)
T PRK04792        400 VAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQGEVKSPAWSP  446 (448)
T ss_pred             ECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCCCCCcCCCccCC
Confidence            99999988765543 3  3667776 45544444   23455566665

>PRK01029 tolB translocation protein TolB; Provisional

Probab=98.96  E-value=2.3e-07  Score=85.51  Aligned_cols=176  Identities=10%  Similarity=0.068  Sum_probs=103.5

Q ss_pred             ceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeC-CC--cEEE--EeCC----CCeEEeeccCCCe-eEEEE-
Q 046394           25 AIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGC-KG--YPYF--YNRD----GTELHCSKEHGEV-LKLQF-   93 (378)
Q Consensus        25 ~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~-dg--~i~i--wd~~----~~~~~~~~~~~~~-~~l~~-   93 (378)
                      ..|.+.++.+++.. .+....+.....+|||||+.||..+. +|  .+++  |+..    +..........+. ....| 
T Consensus       211 ~~I~~~~l~~g~~~-~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wS  289 (428)
T PRK01029        211 PKIFLGSLENPAGK-KILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFS  289 (428)
T ss_pred             ceEEEEECCCCCce-EeecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEEC
Confidence            45777788777543 33333455667899999998887653 23  3444  6643    2222233233233 56677 


Q ss_pred             ----EEE-EEeCCCeEEEE--EcCC-CcEEEEEecCCCCeeEEEEcCCCCEEEEEcCC-Ce---------------eeec
Q 046394           94 ----LLA-SINKLGQLRYQ--NVTM-GEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSG-GT---------------MLCH  149 (378)
Q Consensus        94 ----~l~-s~~~d~~i~iw--d~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-~~---------------~~~h  149 (378)
                          .|+ ++..+|...+|  ++.. +.....+......+....|+|||+.|+..+.. +.               +...
T Consensus       290 PDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~  369 (428)
T PRK01029        290 PDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTS  369 (428)
T ss_pred             CCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCC
Confidence                444 44456654455  4432 23344444445567789999999988766543 22               2222


Q ss_pred             CCCEEEEEEecCCCEEEEEEC---CCeEEEEEcCCceeeeee--cCCceEEEEecCC
Q 046394          150 QGPVSALAFHPNGHLMATSGK---DCKIKIWDLRKYEVLQTL--PGHAKTLDFSRKD  201 (378)
Q Consensus       150 ~~~v~~~~~sp~g~~l~t~~~---d~~i~iwd~~~~~~~~~~--~~~i~~~~~sp~g  201 (378)
                      ...+....|+|||+.|+..+.   ...|.+||+..++.....  .+.+...+|+|-.
T Consensus       370 ~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~~~g~~~~p~Ws~~~  426 (428)
T PRK01029        370 PENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVIGSGEKRFPSWGAFP  426 (428)
T ss_pred             CCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCcccCceecCCC
Confidence            345677899999998875443   346888898776543333  3445666676643

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.95  E-value=1e-06  Score=88.02  Aligned_cols=231  Identities=12%  Similarity=0.068  Sum_probs=143.5

Q ss_pred             eeEEEeccceeeee----ecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCCCe--------------
Q 046394           17 KTWRIKQEAIAREV----DILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTE--------------   78 (378)
Q Consensus        17 ~~~~~~~~~~i~~~----d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~--------------   78 (378)
                      .++.+..+|.|-++    +..+... -....-+.+|.+++||||+..|+..+.+|++.+.+.+-.+              
T Consensus        89 ~l~~~~~~Gdi~~~~~~~~~~~~~~-E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~  167 (928)
T PF04762_consen   89 SLCIALASGDIILVREDPDPDEDEI-EIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGES  167 (928)
T ss_pred             cEEEEECCceEEEEEccCCCCCcee-EEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCC
Confidence            34445555555555    3333322 1122235789999999999999999999998887632111              


Q ss_pred             ----------EEeecc------------------------CC-CeeEEEE-----EEEEEeC---C---CeEEEEEcCCC
Q 046394           79 ----------LHCSKE------------------------HG-EVLKLQF-----LLASINK---L---GQLRYQNVTMG  112 (378)
Q Consensus        79 ----------~~~~~~------------------------~~-~~~~l~~-----~l~s~~~---d---~~i~iwd~~~~  112 (378)
                                -..|+|                        .. +...++|     +||+.+.   .   ..++||+-+ |
T Consensus       168 ~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G  246 (928)
T PF04762_consen  168 KHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-G  246 (928)
T ss_pred             ceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-c
Confidence                      011111                        11 1256778     6666553   2   579999954 7


Q ss_pred             cEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe--------------------eeecCCCEEEEEEecCCCEEEEEECCC
Q 046394          113 EIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT--------------------MLCHQGPVSALAFHPNGHLMATSGKDC  172 (378)
Q Consensus       113 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~--------------------~~~h~~~v~~~~~sp~g~~l~t~~~d~  172 (378)
                      ....+...-.+--.+++|.|.|++||+......                    +......|..+.|++++..||....|.
T Consensus       247 ~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~  326 (928)
T PF04762_consen  247 ELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR  326 (928)
T ss_pred             eEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC
Confidence            655554444455568999999999998876222                    112346789999999999999977665


Q ss_pred             eEEEEEcCCcee--eeee----cCCceEEEEecCCCc---------------cccCCC--------CCceEEEeec----
Q 046394          173 KIKIWDLRKYEV--LQTL----PGHAKTLDFSRKDSG---------------DFSGSH--------NYNRYMGYSM----  219 (378)
Q Consensus       173 ~i~iwd~~~~~~--~~~~----~~~i~~~~~sp~g~~---------------~~~~~~--------~~~~~~~~~~----  219 (378)
                       |.+|-..++.=  -+.+    ...+..+.|+|....               ..|...        +...+....|    
T Consensus       327 -vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~ll  405 (928)
T PF04762_consen  327 -VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLL  405 (928)
T ss_pred             -ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEE
Confidence             99999887542  2222    234555888885432               001000        0011111111    


Q ss_pred             ------------------cCCcceeeeEEcCCCCeEEEecCCCeEEEEE
Q 046394          220 ------------------VKGYQIGKVSFRPYEDVLGIGHSMGVSGILI  250 (378)
Q Consensus       220 ------------------~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~  250 (378)
                                        .-..+|.+++|++++..+|+-..+|.+.++.
T Consensus       406 lTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~  454 (928)
T PF04762_consen  406 LTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYE  454 (928)
T ss_pred             EecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEE
Confidence                              1346799999999998899999999777766

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.93  E-value=3.6e-06  Score=74.26  Aligned_cols=183  Identities=11%  Similarity=0.014  Sum_probs=112.6

Q ss_pred             ccceeeeeecccceeeEEeecCCC-------CceEEEEcCCCCEEEEEe-C-CCcEEEEeC-CCCeEEeeccCCCeeEEE
Q 046394           23 QEAIAREVDILSSRNQYDIMLPEL-------GPYTLDFTSSGRYMAAAG-C-KGYPYFYNR-DGTELHCSKEHGEVLKLQ   92 (378)
Q Consensus        23 ~~~~i~~~d~~~~~~~~~l~~~~~-------~v~~~~~sp~g~~l~~~~-~-dg~i~iwd~-~~~~~~~~~~~~~~~~l~   92 (378)
                      .++.|.+||+.+++.+..+.....       ....+++||||++|++.. . +..|.+.|. .+..+..+.-.....-..
T Consensus        75 ~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~  154 (352)
T TIGR02658        75 RTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFP  154 (352)
T ss_pred             CCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEE
Confidence            689999999999999988886422       234899999999999876 3 689999994 555555555432211111


Q ss_pred             E---EEEEEeCCCeEEEEEcCC-CcE-EEE---EecCCCCe-eEEEEcC-CCCEEEEEcCCCe-----------------
Q 046394           93 F---LLASINKLGQLRYQNVTM-GEI-VGN---FWTGLGRT-DVIRVNP-FNGVVSLGHSGGT-----------------  145 (378)
Q Consensus        93 ~---~l~s~~~d~~i~iwd~~~-~~~-~~~---~~~~~~~v-~~~~~s~-~~~~l~~~~~d~~-----------------  145 (378)
                      .   -+.+-+.||......+.+ |+. ...   |.....++ ..-.|++ +|.+++++.. |.                 
T Consensus       155 t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~  233 (352)
T TIGR02658       155 TANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAI  233 (352)
T ss_pred             ecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceeccee
Confidence            1   111223344443333222 221 111   11100000 0013455 7777777666 44                 


Q ss_pred             -e--------eecCCCEEEEEEecCCCEEEEEE----------CCCeEEEEEcCCceeeeee--cCCceEEEEecCCCcc
Q 046394          146 -M--------LCHQGPVSALAFHPNGHLMATSG----------KDCKIKIWDLRKYEVLQTL--PGHAKTLDFSRKDSGD  204 (378)
Q Consensus       146 -~--------~~h~~~v~~~~~sp~g~~l~t~~----------~d~~i~iwd~~~~~~~~~~--~~~i~~~~~sp~g~~~  204 (378)
                       +        ....+.+.-++++|+|+.+....          ..+.|.++|+.+++.+..+  ...+..++++|||+..
T Consensus       234 ~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~  313 (352)
T TIGR02658       234 EAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPL  313 (352)
T ss_pred             eeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeE
Confidence             0        01223334599999998877643          1257999999999999988  6789999999999943


Q ss_pred             cc
Q 046394          205 FS  206 (378)
Q Consensus       205 ~~  206 (378)
                      ++
T Consensus       314 ly  315 (352)
T TIGR02658       314 LY  315 (352)
T ss_pred             EE
Confidence            33

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.90  E-value=8.4e-06  Score=73.22  Aligned_cols=200  Identities=12%  Similarity=0.151  Sum_probs=123.4

Q ss_pred             CCeeecCC-ceeeEEEec----cceeeeeecccc----eeeEEeecCCCCceEEEEcCCCCEEEEEeC-CCcEEEEeCC-
Q 046394            7 GGYLEAEG-VEKTWRIKQ----EAIAREVDILSS----RNQYDIMLPELGPYTLDFTSSGRYMAAAGC-KGYPYFYNRD-   75 (378)
Q Consensus         7 ~~~l~~~~-~~~~~~~~~----~~~i~~~d~~~~----~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~-dg~i~iwd~~-   75 (378)
                      +.+|+.+. ....|....    .+.|..|.+...    ..+.........+..++++|++++|+++.. +|.|.+++++ 
T Consensus        39 Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~  118 (345)
T PF10282_consen   39 PSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDD  118 (345)
T ss_dssp             ECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred             CceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccC
Confidence            44555543 444555543    457777777653    233334434456778999999999999876 8899999943 


Q ss_pred             -CCeEEe---ec-----------cCCCeeEEEE------EEEEEeCCCeEEEEEcCCCc--E--EEEEe-cCCCCeeEEE
Q 046394           76 -GTELHC---SK-----------EHGEVLKLQF------LLASINKLGQLRYQNVTMGE--I--VGNFW-TGLGRTDVIR  129 (378)
Q Consensus        76 -~~~~~~---~~-----------~~~~~~~l~~------~l~s~~~d~~i~iwd~~~~~--~--~~~~~-~~~~~v~~~~  129 (378)
                       |.....   +.           ....+.++.|      ++++.-....|.+|++....  .  ...+. ........++
T Consensus       119 ~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~  198 (345)
T PF10282_consen  119 DGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLA  198 (345)
T ss_dssp             TSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEE
T ss_pred             CcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEE
Confidence             332221   21           1122366777      44444455689999997654  3  22232 2345688999


Q ss_pred             EcCCCCEEEEEcCCCe----------------------ee-ec--CCCEEEEEEecCCCEEEEEE-CCCeEEEEEcC--C
Q 046394          130 VNPFNGVVSLGHSGGT----------------------ML-CH--QGPVSALAFHPNGHLMATSG-KDCKIKIWDLR--K  181 (378)
Q Consensus       130 ~s~~~~~l~~~~~d~~----------------------~~-~h--~~~v~~~~~sp~g~~l~t~~-~d~~i~iwd~~--~  181 (378)
                      |+|+++++++......                      +. +.  ......|+++|||++|.++. ..++|.+|++.  +
T Consensus       199 f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~  278 (345)
T PF10282_consen  199 FSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPAT  278 (345)
T ss_dssp             E-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTT
T ss_pred             EcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCC
Confidence            9999998877765443                      10 01  12567899999999976655 56799999993  2


Q ss_pred             cee--eeee---cCCceEEEEecCCCcccc
Q 046394          182 YEV--LQTL---PGHAKTLDFSRKDSGDFS  206 (378)
Q Consensus       182 ~~~--~~~~---~~~i~~~~~sp~g~~~~~  206 (378)
                      +.+  +..+   ......++++|+|.+.+.
T Consensus       279 g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~V  308 (345)
T PF10282_consen  279 GTLTLVQTVPTGGKFPRHFAFSPDGRYLYV  308 (345)
T ss_dssp             TTEEEEEEEEESSSSEEEEEE-TTSSEEEE
T ss_pred             CceEEEEEEeCCCCCccEEEEeCCCCEEEE
Confidence            333  3333   345899999999976443

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.88  E-value=1.3e-08  Score=85.64  Aligned_cols=140  Identities=14%  Similarity=0.213  Sum_probs=101.5

Q ss_pred             EeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeC------CCCeEEeeccCCCeeEEEE-
Q 046394           21 IKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNR------DGTELHCSKEHGEVLKLQF-   93 (378)
Q Consensus        21 ~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~------~~~~~~~~~~~~~~~~l~~-   93 (378)
                      +.-+..+-+.|+.|+-.. .+. ..+.|.++.|...+++++.|+.+|.|.++|+      ++.+.+.+.....++++.. 
T Consensus       230 ~G~sqqv~L~nvetg~~q-sf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~L  307 (425)
T KOG2695|consen  230 VGLSQQVLLTNVETGHQQ-SFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQIL  307 (425)
T ss_pred             ccccceeEEEEeeccccc-ccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhh
Confidence            333445556666666442 222 3467999999988999999999999999994      2456666665555565544 


Q ss_pred             -----EEEEEeCCCeEEEEEcCCCcE---EEEEecCCCCeeEEEEcCCCCEEEEEcCCCeeeecCCCEEEEEEecCCCEE
Q 046394           94 -----LLASINKLGQLRYQNVTMGEI---VGNFWTGLGRTDVIRVNPFNGVVSLGHSGGTMLCHQGPVSALAFHPNGHLM  165 (378)
Q Consensus        94 -----~l~s~~~d~~i~iwd~~~~~~---~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~~~~h~~~v~~~~~sp~g~~l  165 (378)
                           .|++.+.+|+|.+||++.-++   +.++.+|-+   ..+                       -.-+.+.+....+
T Consensus       308 q~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN---~~a-----------------------~l~~~v~~eeg~I  361 (425)
T KOG2695|consen  308 QFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVN---LSA-----------------------YLPAHVKEEEGSI  361 (425)
T ss_pred             ccccceEeeccCcCceeEeeehhhhcccceeeeecccc---ccc-----------------------ccccccccccceE
Confidence                 788888999999999987666   777765532   111                       1223356666788


Q ss_pred             EEEECCCeEEEEEcCCceeeeee
Q 046394          166 ATSGKDCKIKIWDLRKYEVLQTL  188 (378)
Q Consensus       166 ~t~~~d~~i~iwd~~~~~~~~~~  188 (378)
                      ++++.|...+||.+++|.++.++
T Consensus       362 ~s~GdDcytRiWsl~~ghLl~ti  384 (425)
T KOG2695|consen  362 FSVGDDCYTRIWSLDSGHLLCTI  384 (425)
T ss_pred             EEccCeeEEEEEecccCceeecc
Confidence            88999999999999999999888

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.86  E-value=1.5e-06  Score=79.66  Aligned_cols=114  Identities=9%  Similarity=-0.086  Sum_probs=66.7

Q ss_pred             eeeeeecccceeeEEeecCCCCceEEEEcCCCCE-EEEEeC---CCcEEEEeCCCCeEEeeccCCCe-eEEEE------E
Q 046394           26 IAREVDILSSRNQYDIMLPELGPYTLDFTSSGRY-MAAAGC---KGYPYFYNRDGTELHCSKEHGEV-LKLQF------L   94 (378)
Q Consensus        26 ~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~-l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~-~~l~~------~   94 (378)
                      .|.+-|..... ...+... +......|||||+. ++..+.   ...|+++|+.+.....+....+. ....|      +
T Consensus       170 ~l~~~d~dg~~-~~~~~~~-~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~l  247 (419)
T PRK04043        170 NIVLADYTLTY-QKVIVKG-GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKL  247 (419)
T ss_pred             eEEEECCCCCc-eeEEccC-CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEE
Confidence            45555554333 3334333 36678999999984 664444   34688999765555555444443 55667      3


Q ss_pred             EEEEeC--CCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcC
Q 046394           95 LASINK--LGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHS  142 (378)
Q Consensus        95 l~s~~~--d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  142 (378)
                      +++.+.  +..|.++|+.++... .+..+........|+|||+.|+..+.
T Consensus       248 a~~~~~~g~~~Iy~~dl~~g~~~-~LT~~~~~d~~p~~SPDG~~I~F~Sd  296 (419)
T PRK04043        248 LLTMAPKGQPDIYLYDTNTKTLT-QITNYPGIDVNGNFVEDDKRIVFVSD  296 (419)
T ss_pred             EEEEccCCCcEEEEEECCCCcEE-EcccCCCccCccEECCCCCEEEEEEC
Confidence            334333  456888898777643 34333333345578888876655543

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.86  E-value=2.9e-07  Score=82.79  Aligned_cols=166  Identities=13%  Similarity=0.099  Sum_probs=123.9

Q ss_pred             eeeEEEeccceeeeeecccceeeEEeec--C-CCCceEEEE------cC--------------CCCEEEEEeCCCcEEEE
Q 046394           16 EKTWRIKQEAIAREVDILSSRNQYDIML--P-ELGPYTLDF------TS--------------SGRYMAAAGCKGYPYFY   72 (378)
Q Consensus        16 ~~~~~~~~~~~i~~~d~~~~~~~~~l~~--~-~~~v~~~~~------sp--------------~g~~l~~~~~dg~i~iw   72 (378)
                      +.+.....++.+++||..+++....+..  | .+...+..|      +|              +...|+-|...|.|.+|
T Consensus         6 ~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~y   85 (541)
T KOG4547|consen    6 DYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLLY   85 (541)
T ss_pred             heEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEEE
Confidence            3344556688999999998887665532  1 223333333      22              23467888889999999


Q ss_pred             eCCCCeE-Eeec--cCCCe-eEEEE-----EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCC
Q 046394           73 NRDGTEL-HCSK--EHGEV-LKLQF-----LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSG  143 (378)
Q Consensus        73 d~~~~~~-~~~~--~~~~~-~~l~~-----~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d  143 (378)
                      +..+..+ ..+.  .|.+. +++.+     .|.+++.|+.+..|+....+.++.+......+.+++++|||..+++++..
T Consensus        86 s~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as~~  165 (541)
T KOG4547|consen   86 SVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTASRQ  165 (541)
T ss_pred             EecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEeccce
Confidence            9544444 4443  46555 77776     89999999999999999999999999989999999999999999988765


Q ss_pred             Ce------------eeecCCCEEEEEEecC-----CCEEEEE-ECCCeEEEEEcCC
Q 046394          144 GT------------MLCHQGPVSALAFHPN-----GHLMATS-GKDCKIKIWDLRK  181 (378)
Q Consensus       144 ~~------------~~~h~~~v~~~~~sp~-----g~~l~t~-~~d~~i~iwd~~~  181 (378)
                      -.            +.+|.++|.++.|--+     |.+++++ ..+..+.+|-+..
T Consensus       166 ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  166 IKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             EEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            44            8899999999999876     6776654 3455677886654

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.85  E-value=1.1e-08  Score=59.77  Aligned_cols=39  Identities=8%  Similarity=0.197  Sum_probs=36.6

Q ss_pred             ceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe
Q 046394           35 SRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN   73 (378)
Q Consensus        35 ~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd   73 (378)
                      ++.+..+.+|...|++|+|+|++.+|++|+.|+.|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            356889999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.83  E-value=1.3e-05  Score=81.80  Aligned_cols=92  Identities=10%  Similarity=-0.006  Sum_probs=60.6

Q ss_pred             eccceeeeeecccceeeEEeec-C-------------CCCceEEEEcCCCCEEEEEeC-CCcEEEEeCCCCeEEeeccC-
Q 046394           22 KQEAIAREVDILSSRNQYDIML-P-------------ELGPYTLDFTSSGRYMAAAGC-KGYPYFYNRDGTELHCSKEH-   85 (378)
Q Consensus        22 ~~~~~i~~~d~~~~~~~~~l~~-~-------------~~~v~~~~~sp~g~~l~~~~~-dg~i~iwd~~~~~~~~~~~~-   85 (378)
                      ...+.|.++|... ..+..+.. .             -..+..++++++++.|+++.. ++.|+++|..+..+.++.+. 
T Consensus       587 s~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G  665 (1057)
T PLN02919        587 SNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNG  665 (1057)
T ss_pred             CCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccC
Confidence            3467788888754 33333322 1             123689999999887776654 56799999766666655321 


Q ss_pred             -----------------CCeeEEEE------EEEEEeCCCeEEEEEcCCCcE
Q 046394           86 -----------------GEVLKLQF------LLASINKLGQLRYQNVTMGEI  114 (378)
Q Consensus        86 -----------------~~~~~l~~------~l~s~~~d~~i~iwd~~~~~~  114 (378)
                                       ..+..++|      ++++.+.++.|++||..++..
T Consensus       666 ~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v  717 (1057)
T PLN02919        666 TKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVT  717 (1057)
T ss_pred             cccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeE
Confidence                             12355666      667777788999999877654

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.80  E-value=1.3e-05  Score=70.79  Aligned_cols=185  Identities=16%  Similarity=0.130  Sum_probs=127.0

Q ss_pred             ceeeEEEeccceeeeeecccceeeEEeecC--CC-----C--ce---EE-EEcC-CCCEEEEEeCCCcEEEEeCCCCeEE
Q 046394           15 VEKTWRIKQEAIAREVDILSSRNQYDIMLP--EL-----G--PY---TL-DFTS-SGRYMAAAGCKGYPYFYNRDGTELH   80 (378)
Q Consensus        15 ~~~~~~~~~~~~i~~~d~~~~~~~~~l~~~--~~-----~--v~---~~-~~sp-~g~~l~~~~~dg~i~iwd~~~~~~~   80 (378)
                      ..+.+.++..+-|.++|..+-.. ..+...  ..     .  +.   -+ .|++ +|.+++..|. |...|.+..+....
T Consensus       277 DGkrIvFq~~GdIylydP~td~l-ekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~~~~i  354 (668)
T COG4946         277 DGKRIVFQNAGDIYLYDPETDSL-EKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWDGYSI  354 (668)
T ss_pred             CCcEEEEecCCcEEEeCCCcCcc-eeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCCCeeE
Confidence            45677788889999999876543 222211  00     0  11   11 2443 6888888875 67888886665555


Q ss_pred             eeccCCCeeEEEE-----EEEEEeCCC-eEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe---------
Q 046394           81 CSKEHGEVLKLQF-----LLASINKLG-QLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT---------  145 (378)
Q Consensus        81 ~~~~~~~~~~l~~-----~l~s~~~d~-~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~---------  145 (378)
                      .+....++.-..+     -++.|..|| .+-|+|..+++. ..+...-+.|.++..+|+|+.++++.....         
T Consensus       355 qv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididng  433 (668)
T COG4946         355 QVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNG  433 (668)
T ss_pred             EcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceE-EEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCC
Confidence            5544444433333     677788888 899999987764 445566789999999999999998887666         


Q ss_pred             -----eeecCCCEEEEEEecCCCEEEEEECCC----eEEEEEcCCceeeeee--cCCceEEEEecCCC
Q 046394          146 -----MLCHQGPVSALAFHPNGHLMATSGKDC----KIKIWDLRKYEVLQTL--PGHAKTLDFSRKDS  202 (378)
Q Consensus       146 -----~~~h~~~v~~~~~sp~g~~l~t~~~d~----~i~iwd~~~~~~~~~~--~~~i~~~~~sp~g~  202 (378)
                           -....+-|+.++|||+++++|-+--+|    .|+++|+..++....-  .+.--+.+|.|||+
T Consensus       434 nv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~r  501 (668)
T COG4946         434 NVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGR  501 (668)
T ss_pred             CeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCc
Confidence                 223446789999999999999776555    7999999887765443  34445566777766

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.80  E-value=3e-06  Score=77.73  Aligned_cols=176  Identities=13%  Similarity=-0.054  Sum_probs=104.4

Q ss_pred             CcEEEEeCCCCeEEeeccCCCeeEEEE------EEEEEeC---CCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEE
Q 046394           67 GYPYFYNRDGTELHCSKEHGEVLKLQF------LLASINK---LGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVV  137 (378)
Q Consensus        67 g~i~iwd~~~~~~~~~~~~~~~~~l~~------~l~s~~~---d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  137 (378)
                      ..|.+-|.+|...+.+..........|      .++..+.   +..|.++|+.+++..... ...+......|+|||+.+
T Consensus       169 ~~l~~~d~dg~~~~~~~~~~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt-~~~g~~~~~~~SPDG~~l  247 (419)
T PRK04043        169 SNIVLADYTLTYQKVIVKGGLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA-SSQGMLVVSDVSKDGSKL  247 (419)
T ss_pred             ceEEEECCCCCceeEEccCCCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe-cCCCcEEeeEECCCCCEE
Confidence            367777777776555444332266667      2333222   467999999888765443 345666778899999866


Q ss_pred             EEE-cCCCe---------------eeecCCCEEEEEEecCCCEEEEEEC-CC--eEEEEEcCCceeeeee-cCCceEEEE
Q 046394          138 SLG-HSGGT---------------MLCHQGPVSALAFHPNGHLMATSGK-DC--KIKIWDLRKYEVLQTL-PGHAKTLDF  197 (378)
Q Consensus       138 ~~~-~~d~~---------------~~~h~~~v~~~~~sp~g~~l~t~~~-d~--~i~iwd~~~~~~~~~~-~~~i~~~~~  197 (378)
                      +.. +.++.               +..+.+......|+|||+.|+-.+. .+  .|.+.|+.+++..... .+. ....|
T Consensus       248 a~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~-~~~~~  326 (419)
T PRK04043        248 LLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGK-NNSSV  326 (419)
T ss_pred             EEEEccCCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCC-cCceE
Confidence            544 33333               3333333445689999998776663 23  6888898877664333 222 23589


Q ss_pred             ecCCCccccCCCCC--------ceEEEeecc--------CCcceeeeEEcCCCCeEEEecCCC
Q 046394          198 SRKDSGDFSGSHNY--------NRYMGYSMV--------KGYQIGKVSFRPYEDVLGIGHSMG  244 (378)
Q Consensus       198 sp~g~~~~~~~~~~--------~~~~~~~~~--------~~~~v~~~~~sp~g~~l~~~~~~g  244 (378)
                      ||||...++.....        ..+......        .........|+|||+.++.....+
T Consensus       327 SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~~~~~~p~~SPDG~~I~f~~~~~  389 (419)
T PRK04043        327 STYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTANGVNQFPRFSSDGGSIMFIKYLG  389 (419)
T ss_pred             CCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCCCCcCCeEECCCCCEEEEEEccC
Confidence            99999754432211        122222210        011233588999999887665543

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.80  E-value=1.6e-07  Score=87.07  Aligned_cols=126  Identities=15%  Similarity=0.120  Sum_probs=100.1

Q ss_pred             ceeeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCC------------CEEEEEeCCCcEEEEe-CCCCeEEe
Q 046394           15 VEKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSG------------RYMAAAGCKGYPYFYN-RDGTELHC   81 (378)
Q Consensus        15 ~~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g------------~~l~~~~~dg~i~iwd-~~~~~~~~   81 (378)
                      ....+.+..-..|-+.|.-+.+.+..+..|...|+.+.|.|-.            -.||++...|.|.+|| ..+..+..
T Consensus        25 ~~GLiAygshslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~  104 (1062)
T KOG1912|consen   25 PSGLIAYGSHSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINW  104 (1062)
T ss_pred             ccceEEEecCceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhh
Confidence            3456677778889999999999999999999999999998732            1477788899999999 45555666


Q ss_pred             eccCCCe-eEEEE---------EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCC-CEEEEE
Q 046394           82 SKEHGEV-LKLQF---------LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFN-GVVSLG  140 (378)
Q Consensus        82 ~~~~~~~-~~l~~---------~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~  140 (378)
                      +..|..+ ..++|         +++.-....+|.+|+..+|+.+...........|+.+.|-. +.+...
T Consensus       105 l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l  174 (1062)
T KOG1912|consen  105 LSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVL  174 (1062)
T ss_pred             hcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEE
Confidence            7777766 88888         66666777899999999999999888777778888888844 444433

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.77  E-value=5.8e-06  Score=70.49  Aligned_cols=180  Identities=16%  Similarity=0.161  Sum_probs=123.2

Q ss_pred             eccceeeeeecccceeeEEeecCCCCce--EEEEcCCCCEEEEEeC-----CCcEEEEeCC--CCeEEeeccCC-CeeEE
Q 046394           22 KQEAIAREVDILSSRNQYDIMLPELGPY--TLDFTSSGRYMAAAGC-----KGYPYFYNRD--GTELHCSKEHG-EVLKL   91 (378)
Q Consensus        22 ~~~~~i~~~d~~~~~~~~~l~~~~~~v~--~~~~sp~g~~l~~~~~-----dg~i~iwd~~--~~~~~~~~~~~-~~~~l   91 (378)
                      -......+||..+++....+....+.-+  .-+|||||++|++.-.     .|.|-|||..  ...+..+..|. ++..+
T Consensus        25 RPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel  104 (305)
T PF07433_consen   25 RPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHEL  104 (305)
T ss_pred             CCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhE
Confidence            4467788899999998877766444333  5789999999998633     6799999965  34455565554 33555


Q ss_pred             EE-----EEEEE------------------eCCCeEEEEEcCCCcEEEEEec----CCCCeeEEEEcCCCCEEEEEcCCC
Q 046394           92 QF-----LLASI------------------NKLGQLRYQNVTMGEIVGNFWT----GLGRTDVIRVNPFNGVVSLGHSGG  144 (378)
Q Consensus        92 ~~-----~l~s~------------------~~d~~i~iwd~~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~~d~  144 (378)
                      .+     .|+.+                  ..+..+.+.|..+|+.+.....    |..++..++++++|..++..-..+
T Consensus       105 ~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg  184 (305)
T PF07433_consen  105 LLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQG  184 (305)
T ss_pred             EEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCC
Confidence            55     22222                  2235677788888988776433    667899999999998877766555


Q ss_pred             e--------------------------eeecCCCEEEEEEecCCCEEEE-EECCCeEEEEEcCCceeeeee-cCCceEEE
Q 046394          145 T--------------------------MLCHQGPVSALAFHPNGHLMAT-SGKDCKIKIWDLRKYEVLQTL-PGHAKTLD  196 (378)
Q Consensus       145 ~--------------------------~~~h~~~v~~~~~sp~g~~l~t-~~~d~~i~iwd~~~~~~~~~~-~~~i~~~~  196 (378)
                      .                          ...-.+.+-+|+++++|.++++ +-..+.+.+||..++.++... -..++.++
T Consensus       185 ~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~D~cGva  264 (305)
T PF07433_consen  185 DPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLPDACGVA  264 (305)
T ss_pred             CCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccCceeeee
Confidence            4                          1233467899999999987754 447779999999998876655 23334444


Q ss_pred             EecCC
Q 046394          197 FSRKD  201 (378)
Q Consensus       197 ~sp~g  201 (378)
                      -.+++
T Consensus       265 ~~~~~  269 (305)
T PF07433_consen  265 PTDDG  269 (305)
T ss_pred             ecCCc
Confidence            33333

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.74  E-value=1e-07  Score=87.66  Aligned_cols=196  Identities=8%  Similarity=0.080  Sum_probs=132.9

Q ss_pred             CCceEEEEcCCCCEEEEEeCCCcEEEEeCCC----------------CeEEeeccCCCe-eEEEE-----EEEEEeCCCe
Q 046394           46 LGPYTLDFTSSGRYMAAAGCKGYPYFYNRDG----------------TELHCSKEHGEV-LKLQF-----LLASINKLGQ  103 (378)
Q Consensus        46 ~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~----------------~~~~~~~~~~~~-~~l~~-----~l~s~~~d~~  103 (378)
                      ....|+.|+.+..+||+||.||-++|..+..                ..-+++.+|.+. ..+.|     .+-|+..+|.
T Consensus        15 vkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~Gl   94 (1189)
T KOG2041|consen   15 VKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGL   94 (1189)
T ss_pred             ceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCce
Confidence            4467999999999999999999999987321                012457889876 77888     7888888999


Q ss_pred             EEEEEcCCCcEEEEEe--cCCCCeeEEEEcCCCCEEEEEcCCCe----------eeec---CCCEEEEEEecCCCEEEEE
Q 046394          104 LRYQNVTMGEIVGNFW--TGLGRTDVIRVNPFNGVVSLGHSGGT----------MLCH---QGPVSALAFHPNGHLMATS  168 (378)
Q Consensus       104 i~iwd~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~d~~----------~~~h---~~~v~~~~~sp~g~~l~t~  168 (378)
                      |.+|-+-.|+....+.  ...+.|.+++|+.||+.++....||.          +.+-   ......+.|++|...++.+
T Consensus        95 IiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~Lf~  174 (1189)
T KOG2041|consen   95 IIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQALFK  174 (1189)
T ss_pred             EEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchheccceeecccHHHHHhh
Confidence            9999987776433322  23467889999999998887777776          1110   1123468899999988888


Q ss_pred             ECCCeEEEEEcCCc-------eeeeee-------cCCceEEEEec------------------CCCc-cccCCCCCceEE
Q 046394          169 GKDCKIKIWDLRKY-------EVLQTL-------PGHAKTLDFSR------------------KDSG-DFSGSHNYNRYM  215 (378)
Q Consensus       169 ~~d~~i~iwd~~~~-------~~~~~~-------~~~i~~~~~sp------------------~g~~-~~~~~~~~~~~~  215 (378)
                      -..|.+.+||....       .+....       +..+..+.|..                  +|.. .+.+..+..|+.
T Consensus       175 ~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv  254 (1189)
T KOG2041|consen  175 KANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVV  254 (1189)
T ss_pred             hcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeE
Confidence            88999999997421       111111       22344444432                  1111 222333444443


Q ss_pred             EeeccCCcceeeeEEcCCCCeEEEecCCC
Q 046394          216 GYSMVKGYQIGKVSFRPYEDVLGIGHSMG  244 (378)
Q Consensus       216 ~~~~~~~~~v~~~~~sp~g~~l~~~~~~g  244 (378)
                      .-   .+..|....|+++|.+||+++.+.
T Consensus       255 ~d---tgm~~vgakWnh~G~vLAvcG~~~  280 (1189)
T KOG2041|consen  255 VD---TGMKIVGAKWNHNGAVLAVCGNDS  280 (1189)
T ss_pred             Ee---cccEeecceecCCCcEEEEccCcc
Confidence            33   346788999999999999987664

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.74  E-value=6.9e-08  Score=86.20  Aligned_cols=146  Identities=15%  Similarity=0.097  Sum_probs=107.8

Q ss_pred             eEEEeccceeeeeecc-------cceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEee-c--cCC
Q 046394           18 TWRIKQEAIAREVDIL-------SSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCS-K--EHG   86 (378)
Q Consensus        18 ~~~~~~~~~i~~~d~~-------~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~-~--~~~   86 (378)
                      +++.+.|.++++|.+.       |..+.+++..|..+|..+.|-.+-++++++  ||.|.+|| .-|..+..+ .  .|.
T Consensus       750 FiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPFigr~Laq~~dapk~~  827 (1034)
T KOG4190|consen  750 FISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWDPFIGRLLAQMEDAPKEG  827 (1034)
T ss_pred             eeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcceeecccccchhHhhhcCcccC
Confidence            3444555566666553       445789999999999999999888888765  88999999 566655422 2  222


Q ss_pred             Ce-eEEEE-------EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCeeeecCCCEEEEEE
Q 046394           87 EV-LKLQF-------LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGTMLCHQGPVSALAF  158 (378)
Q Consensus        87 ~~-~~l~~-------~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~~~~h~~~v~~~~~  158 (378)
                      .. .-.+.       +++.|+...+|+++|.+.+..+..++....+                       +.++.+.+++.
T Consensus       828 a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~-----------------------~Pna~~R~iaV  884 (1034)
T KOG4190|consen  828 AGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAP-----------------------GPNALTRAIAV  884 (1034)
T ss_pred             CCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCC-----------------------CCchheeEEEe
Confidence            22 22222       5666688899999999998877776643221                       44567889999


Q ss_pred             ecCCCEEEEEECCCeEEEEEcCCceeeeee
Q 046394          159 HPNGHLMATSGKDCKIKIWDLRKYEVLQTL  188 (378)
Q Consensus       159 sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~  188 (378)
                      .|.|++++.+-..|+|.+.|.++|..+...
T Consensus       885 a~~GN~lAa~LSnGci~~LDaR~G~vINsw  914 (1034)
T KOG4190|consen  885 ADKGNKLAAALSNGCIAILDARNGKVINSW  914 (1034)
T ss_pred             ccCcchhhHHhcCCcEEEEecCCCceeccC
Confidence            999999999999999999999999988765

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.73  E-value=5.6e-08  Score=89.54  Aligned_cols=216  Identities=12%  Similarity=0.090  Sum_probs=145.8

Q ss_pred             CceEEEEcCCC--CEEEEEeCCCcEEEEeC----CCCeEEeeccCCCe-eEEEE------EEEEEeCCCeEEEEEcCCC-
Q 046394           47 GPYTLDFTSSG--RYMAAAGCKGYPYFYNR----DGTELHCSKEHGEV-LKLQF------LLASINKLGQLRYQNVTMG-  112 (378)
Q Consensus        47 ~v~~~~~sp~g--~~l~~~~~dg~i~iwd~----~~~~~~~~~~~~~~-~~l~~------~l~s~~~d~~i~iwd~~~~-  112 (378)
                      .|-...|+|..  .+-++......-.+|++    +...-..+.+|... +.+.|      .+++++.|..+..||+++. 
T Consensus        69 ~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~  148 (1081)
T KOG0309|consen   69 QVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPH  148 (1081)
T ss_pred             hhcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCC
Confidence            35577888754  34445545556778993    22334567788876 99999      9999999999999999875 


Q ss_pred             cEEEEEecCCCCeeEEEEcCCC-CEEEEEcCCCe--------------eeecCCCEEEEEEec-CCCEEEEEECCCeEEE
Q 046394          113 EIVGNFWTGLGRTDVIRVNPFN-GVVSLGHSGGT--------------MLCHQGPVSALAFHP-NGHLMATSGKDCKIKI  176 (378)
Q Consensus       113 ~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~d~~--------------~~~h~~~v~~~~~sp-~g~~l~t~~~d~~i~i  176 (378)
                      .++..+.........++|+... ..+|+......              +.+|...|..++|+. -...+.+++.|++|+.
T Consensus       149 ~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkf  228 (1081)
T KOG0309|consen  149 RPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKF  228 (1081)
T ss_pred             cceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceee
Confidence            4566666555667788888644 44444433332              667777888888876 3345889999999999


Q ss_pred             EEcCCcee--eeee--cCCceEEEEecCCCc---------------------cccCC-CCCceEEEeeccCCcceeeeEE
Q 046394          177 WDLRKYEV--LQTL--PGHAKTLDFSRKDSG---------------------DFSGS-HNYNRYMGYSMVKGYQIGKVSF  230 (378)
Q Consensus       177 wd~~~~~~--~~~~--~~~i~~~~~sp~g~~---------------------~~~~~-~~~~~~~~~~~~~~~~v~~~~~  230 (378)
                      ||......  -++.  ..++....+-|-|.-                     ..|+. ....+++.+.| |...|....|
T Consensus       229 w~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~G-H~D~V~eFlW  307 (1081)
T KOG0309|consen  229 WDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVG-HDDVVLEFLW  307 (1081)
T ss_pred             ecccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecC-cchHHHHHhh
Confidence            99875433  2333  356666666664431                     22332 24567888888 9998988888


Q ss_pred             cCCCCeEEEecCCCeEEEEEcCCCCcccccccCCC
Q 046394          231 RPYEDVLGIGHSMGVSGILIPGSGEPNFDSWVANP  265 (378)
Q Consensus       231 sp~g~~l~~~~~~g~~~~~~~~s~d~~i~~w~~~~  265 (378)
                      -..+..  .|+.|..-.-+++-|.|..+++|.+..
T Consensus       308 R~r~e~--~~d~d~rdfQLVTWSkD~~lrlWpI~~  340 (1081)
T KOG0309|consen  308 RKRKEC--DGDYDSRDFQLVTWSKDQTLRLWPIDS  340 (1081)
T ss_pred             hhcccc--cCCCCccceeEEEeecCCceEeeeccH
Confidence            655432  233333335678889999999997644

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.72  E-value=1.9e-05  Score=72.03  Aligned_cols=231  Identities=16%  Similarity=0.110  Sum_probs=133.1

Q ss_pred             ceeeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeC-CCCeEEeeccCCCe-eEEE
Q 046394           15 VEKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNR-DGTELHCSKEHGEV-LKLQ   92 (378)
Q Consensus        15 ~~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~-~~l~   92 (378)
                      .+..|....++.+..+|..+++.++..........+...  ++..+++++.+|.++.+|. +|..+........+ ....
T Consensus        65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~  142 (377)
T TIGR03300        65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPL  142 (377)
T ss_pred             CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCE
Confidence            456677777889999999999999887765432223333  4667888889999999995 78887766544433 2222


Q ss_pred             E---EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCe-----eEEEEcCCCCEEEEEcCCCee---eecCCCE-E------
Q 046394           93 F---LLASINKLGQLRYQNVTMGEIVGNFWTGLGRT-----DVIRVNPFNGVVSLGHSGGTM---LCHQGPV-S------  154 (378)
Q Consensus        93 ~---~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v-----~~~~~s~~~~~l~~~~~d~~~---~~h~~~v-~------  154 (378)
                      .   .++.++.++.|..||..+|+.+..+......+     .+....  +..++.+..++.+   ....+.+ .      
T Consensus       143 v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~  220 (377)
T TIGR03300       143 VANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQPLWEQRVAL  220 (377)
T ss_pred             EECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCCEeeeecccc
Confidence            2   66667789999999999999887765432211     111111  2345555555541   1111110 0      


Q ss_pred             -----------EEEEec--CCCEEEEEECCCeEEEEEcCCceeeeee-cCCce-------E-EEEecCCCccccCCCCCc
Q 046394          155 -----------ALAFHP--NGHLMATSGKDCKIKIWDLRKYEVLQTL-PGHAK-------T-LDFSRKDSGDFSGSHNYN  212 (378)
Q Consensus       155 -----------~~~~sp--~g~~l~t~~~d~~i~iwd~~~~~~~~~~-~~~i~-------~-~~~sp~g~~~~~~~~~~~  212 (378)
                                 .+.-+|  .+..+++++.+|.+..||..+|+.+... .....       . ...+.+|....++..++.
T Consensus       221 ~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~~~~p~~~~~~vyv~~~~G~l~~~d~~tG~  300 (377)
T TIGR03300       221 PKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDASSYQGPAVDDNRLYVTDADGVVVALDRRSGS  300 (377)
T ss_pred             CCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccCCccCceEeCCEEEEECCCCeEEEEECCCCc
Confidence                       011112  3457788888999999999999877655 11111       1 122345555555554544


Q ss_pred             eEEEeeccCCcceeeeEEcCCCCeEEEecCCCeEEEEEc
Q 046394          213 RYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILIP  251 (378)
Q Consensus       213 ~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~~  251 (378)
                      .+-...............  .+..|++++.+|.+..+..
T Consensus       301 ~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~  337 (377)
T TIGR03300       301 ELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSR  337 (377)
T ss_pred             EEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEEC
Confidence            433221101111111111  3567777777776665543

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=98.72  E-value=8.9e-08  Score=80.62  Aligned_cols=80  Identities=11%  Similarity=0.058  Sum_probs=66.3

Q ss_pred             cccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCCC--eEEeeccCCCe-eEEEE-----EEEEEeCCCe
Q 046394           32 ILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGT--ELHCSKEHGEV-LKLQF-----LLASINKLGQ  103 (378)
Q Consensus        32 ~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~-~~l~~-----~l~s~~~d~~  103 (378)
                      ......+..+.+|.+.+++++|.|....|++|..|..|.+||+-+.  ....+.+|..- ..+.+     .+.+++.||.
T Consensus       184 ~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~  263 (404)
T KOG1409|consen  184 QNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGG  263 (404)
T ss_pred             ecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCe
Confidence            3455677889999999999999999999999999999999996543  44567777764 65555     8999999999


Q ss_pred             EEEEEcCC
Q 046394          104 LRYQNVTM  111 (378)
Q Consensus       104 i~iwd~~~  111 (378)
                      |.+||+..
T Consensus       264 i~~w~mn~  271 (404)
T KOG1409|consen  264 IVVWNMNV  271 (404)
T ss_pred             EEEEeccc
Confidence            99999864

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.72  E-value=4.4e-07  Score=84.66  Aligned_cols=150  Identities=16%  Similarity=0.232  Sum_probs=114.5

Q ss_pred             CCceEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEeeccCCCeeEEEE-EEEEEeCCCeEEEEEcCCCcEEEEEecCCCC
Q 046394           46 LGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTELHCSKEHGEVLKLQF-LLASINKLGQLRYQNVTMGEIVGNFWTGLGR  124 (378)
Q Consensus        46 ~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~l~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~  124 (378)
                      ..++|++++  +++|+.|..+|.|++++..+.. .+...|... ...= +++||+.||+|.|-.+-+.+...++. ...+
T Consensus        40 D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~-~~~~~~s~~-~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d-f~rp  114 (846)
T KOG2066|consen   40 DAISCCAVH--DKFFALGTHRGAVYLTTCQGNP-KTNFDHSSS-ILEGEYVASCSDDGKVVIGSLFTDDEITQYD-FKRP  114 (846)
T ss_pred             hHHHHHHhh--cceeeeccccceEEEEecCCcc-ccccccccc-ccCCceEEEecCCCcEEEeeccCCccceeEe-cCCc
Confidence            467788877  6799999999999999988877 444445332 1111 89999999999999998888776664 3478


Q ss_pred             eeEEEEcCC-----CCEEEEEcCCCe---------------eeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCcee
Q 046394          125 TDVIRVNPF-----NGVVSLGHSGGT---------------MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEV  184 (378)
Q Consensus       125 v~~~~~s~~-----~~~l~~~~~d~~---------------~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~  184 (378)
                      +.+++++|+     .+.+++|+.-|.               +....|+|.++.|.  |+++|-++.+| |+|||+.+.+.
T Consensus       115 iksial~Pd~~~~~sk~fv~GG~aglvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~  191 (846)
T KOG2066|consen  115 IKSIALHPDFSRQQSKQFVSGGMAGLVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQR  191 (846)
T ss_pred             ceeEEeccchhhhhhhheeecCcceEEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cEEEeccccce
Confidence            999999998     457888887765               44557899999996  77999998887 89999999888


Q ss_pred             eeee---c------CCceEEEEecCCCc
Q 046394          185 LQTL---P------GHAKTLDFSRKDSG  203 (378)
Q Consensus       185 ~~~~---~------~~i~~~~~sp~g~~  203 (378)
                      +..+   +      .....+.|.++...
T Consensus       192 l~~i~~p~~~~R~e~fpphl~W~~~~~L  219 (846)
T KOG2066|consen  192 LTNIPPPSQSVRPELFPPHLHWQDEDRL  219 (846)
T ss_pred             eeccCCCCCCCCcccCCCceEecCCCeE
Confidence            7776   1      12355677766553

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.70  E-value=5.8e-08  Score=56.61  Aligned_cols=32  Identities=28%  Similarity=0.783  Sum_probs=30.5

Q ss_pred             eecCCCEEEEEEecCCCEEEEEECCCeEEEEE
Q 046394          147 LCHQGPVSALAFHPNGHLMATSGKDCKIKIWD  178 (378)
Q Consensus       147 ~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd  178 (378)
                      .+|.+.|.+|+|+|++++|++++.|++|++||
T Consensus         8 ~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    8 RGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             ESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             cCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            48899999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.69  E-value=1.5e-08  Score=95.00  Aligned_cols=175  Identities=13%  Similarity=0.211  Sum_probs=123.8

Q ss_pred             ceeeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCC--cEEEEeC--CCCeEEeeccCCCeeE
Q 046394           15 VEKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKG--YPYFYNR--DGTELHCSKEHGEVLK   90 (378)
Q Consensus        15 ~~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg--~i~iwd~--~~~~~~~~~~~~~~~~   90 (378)
                      .+..+.....|.|+++++.+|.......+|..+|+-+.-|.+|..+++.+...  -..+|+.  .+.+.+++...   .+
T Consensus      1113 ~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~~Hsf~ed---~~ 1189 (1516)
T KOG1832|consen 1113 TNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGGPRHSFDED---KA 1189 (1516)
T ss_pred             CceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhccccccCcccccccc---ce
Confidence            44455567799999999999999999999999999999999998777665432  5788994  45666666544   44


Q ss_pred             EEE-------EEEEEeCCCeEEEEEcCCCcEEEEEec----CCCCeeEEEEcCCCCEEEEEcCCCe------------ee
Q 046394           91 LQF-------LLASINKLGQLRYQNVTMGEIVGNFWT----GLGRTDVIRVNPFNGVVSLGHSGGT------------ML  147 (378)
Q Consensus        91 l~~-------~l~s~~~d~~i~iwd~~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~~d~~------------~~  147 (378)
                      +.|       .+-+++  ....+||+.++.++.++-.    ..-.-++..|||+..+++-   ||.            +.
T Consensus      1190 vkFsn~~q~r~~gt~~--d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIln---dGvLWDvR~~~aIh~FD 1264 (1516)
T KOG1832|consen 1190 VKFSNSLQFRALGTEA--DDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLILN---DGVLWDVRIPEAIHRFD 1264 (1516)
T ss_pred             eehhhhHHHHHhcccc--cceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEee---CceeeeeccHHHHhhhh
Confidence            455       333333  4578999999887766322    1223478899999987763   333            11


Q ss_pred             ecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeeec-CCceEEEEecCCCc
Q 046394          148 CHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLP-GHAKTLDFSRKDSG  203 (378)
Q Consensus       148 ~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~~-~~i~~~~~sp~g~~  203 (378)
                      ..+.. ..=.|+|+|+.++.-+     -|||+++.+++++.+ -.-+.+.|+..|..
T Consensus      1265 ~ft~~-~~G~FHP~g~eVIINS-----EIwD~RTF~lLh~VP~Ldqc~VtFNstG~V 1315 (1516)
T KOG1832|consen 1265 QFTDY-GGGGFHPSGNEVIINS-----EIWDMRTFKLLHSVPSLDQCAVTFNSTGDV 1315 (1516)
T ss_pred             hheec-ccccccCCCceEEeec-----hhhhhHHHHHHhcCccccceEEEeccCccc
Confidence            11111 1235899999888776     589999999998883 45678899988874

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=98.69  E-value=5.5e-07  Score=75.94  Aligned_cols=183  Identities=11%  Similarity=0.078  Sum_probs=124.3

Q ss_pred             eEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CC-CCeEEeecc--CCCeeEEEE-----EEEEEeCCCeEEEEE
Q 046394           38 QYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RD-GTELHCSKE--HGEVLKLQF-----LLASINKLGQLRYQN  108 (378)
Q Consensus        38 ~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~-~~~~~~~~~--~~~~~~l~~-----~l~s~~~d~~i~iwd  108 (378)
                      ...+.+|...++....-|-..-+++.+.|.+++||- .+ ++.-..+..  ...++++.+     .|+.+-..|++.-+.
T Consensus        17 l~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs   96 (404)
T KOG1409|consen   17 LSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFA   96 (404)
T ss_pred             hhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEE
Confidence            455778888888887878777899999999999997 32 333223222  223377777     778888888888776


Q ss_pred             cCC----CcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe---------------------------------------
Q 046394          109 VTM----GEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT---------------------------------------  145 (378)
Q Consensus       109 ~~~----~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~---------------------------------------  145 (378)
                      +..    -..++....|...+..+-|+-...++++.+.|..                                       
T Consensus        97 ~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gq  176 (404)
T KOG1409|consen   97 LSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQ  176 (404)
T ss_pred             hhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccc
Confidence            542    2334455567778888888877777777766655                                       


Q ss_pred             ----------------eeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeeecCCceEEEEecCCCccccCCC
Q 046394          146 ----------------MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHAKTLDFSRKDSGDFSGSH  209 (378)
Q Consensus       146 ----------------~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~~~~i~~~~~sp~g~~~~~~~~  209 (378)
                                      +.+|.+.+++++|.|....|.+|..|..|.+||+.-.+                          
T Consensus       177 vt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~--------------------------  230 (404)
T KOG1409|consen  177 ITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRK--------------------------  230 (404)
T ss_pred             eEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCc--------------------------
Confidence                            56677777777777777777777777777777775321                          


Q ss_pred             CCceEEEeeccCCcceeeeEEcCCCCeEEEecCCCeEEEE
Q 046394          210 NYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGIL  249 (378)
Q Consensus       210 ~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~  249 (378)
                        .......+ |...|..+..-+.-+.|.+++.||.+.+|
T Consensus       231 --g~~~el~g-h~~kV~~l~~~~~t~~l~S~~edg~i~~w  267 (404)
T KOG1409|consen  231 --GTAYELQG-HNDKVQALSYAQHTRQLISCGEDGGIVVW  267 (404)
T ss_pred             --ceeeeecc-chhhhhhhhhhhhheeeeeccCCCeEEEE
Confidence              12233444 66678888877777666666666655444

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.69  E-value=1.3e-06  Score=71.42  Aligned_cols=143  Identities=14%  Similarity=0.169  Sum_probs=95.4

Q ss_pred             eccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCC--CCeEEe-ecc-CCCe-eEEEE---
Q 046394           22 KQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRD--GTELHC-SKE-HGEV-LKLQF---   93 (378)
Q Consensus        22 ~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~--~~~~~~-~~~-~~~~-~~l~~---   93 (378)
                      +.|.++++.++..+...+.+....-.+.++++|+|++++++.+....|..|.++  +..+.. ..+ ..+- .+..|   
T Consensus       135 sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~  214 (344)
T KOG4532|consen  135 SNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSEN  214 (344)
T ss_pred             cCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccC
Confidence            345556666655554444444333347899999999999999999999999853  333322 222 2222 66777   


Q ss_pred             --EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCeeeecCCCEEEEEEecCCCE--EEEEE
Q 046394           94 --LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGTMLCHQGPVSALAFHPNGHL--MATSG  169 (378)
Q Consensus        94 --~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~~~~h~~~v~~~~~sp~g~~--l~t~~  169 (378)
                        .+|++..||++.|||++.-...........                       ..|++.+..+.|+|-|..  |...-
T Consensus       215 ~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstr-----------------------p~hnGa~R~c~Fsl~g~lDLLf~sE  271 (344)
T KOG4532|consen  215 DLQFAVVFQDGTCAIYDVRNMATPMAEISSTR-----------------------PHHNGAFRVCRFSLYGLLDLLFISE  271 (344)
T ss_pred             cceEEEEecCCcEEEEEecccccchhhhcccC-----------------------CCCCCceEEEEecCCCcceEEEEec
Confidence              999999999999999987543332222111                       258899999999985543  44444


Q ss_pred             CCCeEEEEEcCCceeeee
Q 046394          170 KDCKIKIWDLRKYEVLQT  187 (378)
Q Consensus       170 ~d~~i~iwd~~~~~~~~~  187 (378)
                      .=+.+.+-|++++.-...
T Consensus       272 hfs~~hv~D~R~~~~~q~  289 (344)
T KOG4532|consen  272 HFSRVHVVDTRNYVNHQV  289 (344)
T ss_pred             CcceEEEEEcccCceeeE
Confidence            456799999999765443

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.63  E-value=2.8e-05  Score=66.52  Aligned_cols=177  Identities=15%  Similarity=0.168  Sum_probs=112.3

Q ss_pred             CCcEEEEeCCC--CeE---EeeccCCCeeEEEE-----EEEEEeC---CCeEEEEEcCC--CcE--EEEEecCCCCeeEE
Q 046394           66 KGYPYFYNRDG--TEL---HCSKEHGEVLKLQF-----LLASINK---LGQLRYQNVTM--GEI--VGNFWTGLGRTDVI  128 (378)
Q Consensus        66 dg~i~iwd~~~--~~~---~~~~~~~~~~~l~~-----~l~s~~~---d~~i~iwd~~~--~~~--~~~~~~~~~~v~~~  128 (378)
                      +..|++|+++.  ..+   ........++-|+|     .|.++..   +|.|-.|.+..  |..  +........+...+
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv   94 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV   94 (346)
T ss_pred             CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence            45699999542  122   22222333477777     4555433   56777776654  443  22222233445889


Q ss_pred             EEcCCCCEEEEEcCCCe------------------eeecCCC----------EEEEEEecCCCEEEEEEC-CCeEEEEEc
Q 046394          129 RVNPFNGVVSLGHSGGT------------------MLCHQGP----------VSALAFHPNGHLMATSGK-DCKIKIWDL  179 (378)
Q Consensus       129 ~~s~~~~~l~~~~~d~~------------------~~~h~~~----------v~~~~~sp~g~~l~t~~~-d~~i~iwd~  179 (378)
                      +++++|++++++.....                  +..|.+.          +.+..+.|++++|+++.. -..|.+|++
T Consensus        95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~  174 (346)
T COG2706          95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDL  174 (346)
T ss_pred             EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEc
Confidence            99999999999877655                  3445555          888999999999988763 346999999


Q ss_pred             CCceeeeee------cCCceEEEEecCCCc-----------cccCCCC----CceEEEeec-----cCCcceeeeEEcCC
Q 046394          180 RKYEVLQTL------PGHAKTLDFSRKDSG-----------DFSGSHN----YNRYMGYSM-----VKGYQIGKVSFRPY  233 (378)
Q Consensus       180 ~~~~~~~~~------~~~i~~~~~sp~g~~-----------~~~~~~~----~~~~~~~~~-----~~~~~v~~~~~sp~  233 (378)
                      ..|.+...-      .....-|.|+|+|++           .+|....    ...++.+..     ........+..+||
T Consensus       175 ~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~d  254 (346)
T COG2706         175 DDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPD  254 (346)
T ss_pred             ccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCC
Confidence            977663322      467899999999996           2332222    111221111     12345678899999


Q ss_pred             CCeEEEecC
Q 046394          234 EDVLGIGHS  242 (378)
Q Consensus       234 g~~l~~~~~  242 (378)
                      |++|.++..
T Consensus       255 GrFLYasNR  263 (346)
T COG2706         255 GRFLYASNR  263 (346)
T ss_pred             CCEEEEecC
Confidence            999988764

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.62  E-value=7.8e-06  Score=81.78  Aligned_cols=160  Identities=12%  Similarity=0.108  Sum_probs=106.1

Q ss_pred             eeEEEE-----EEEEEeCCCeEEEE----EcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe-------------
Q 046394           88 VLKLQF-----LLASINKLGQLRYQ----NVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT-------------  145 (378)
Q Consensus        88 ~~~l~~-----~l~s~~~d~~i~iw----d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~-------------  145 (378)
                      +.++.|     .++.+..+|.|.+.    |..+.. +.....-...|.+++||||+..|+..+.++.             
T Consensus        78 ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~-~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E  156 (928)
T PF04762_consen   78 IVSFQYLADSESLCIALASGDIILVREDPDPDEDE-IEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISE  156 (928)
T ss_pred             EEEEEeccCCCcEEEEECCceEEEEEccCCCCCce-eEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEE
Confidence            366766     56667778888888    544332 2222233578999999999999999988877             


Q ss_pred             ------------------------eee------------------------cCCCEEEEEEecCCCEEEEEEC---C---
Q 046394          146 ------------------------MLC------------------------HQGPVSALAFHPNGHLMATSGK---D---  171 (378)
Q Consensus       146 ------------------------~~~------------------------h~~~v~~~~~sp~g~~l~t~~~---d---  171 (378)
                                              +.|                        +...-..|+|-.||.|||+.+.   +   
T Consensus       157 ~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~  236 (928)
T PF04762_consen  157 VPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSR  236 (928)
T ss_pred             eecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCce
Confidence                                    111                        1223457889999999998775   2   


Q ss_pred             CeEEEEEcCCceeeeee---cCCceEEEEecCCCccccC------------CCCCceEEEeec---cCCcceeeeEEcCC
Q 046394          172 CKIKIWDLRKYEVLQTL---PGHAKTLDFSRKDSGDFSG------------SHNYNRYMGYSM---VKGYQIGKVSFRPY  233 (378)
Q Consensus       172 ~~i~iwd~~~~~~~~~~---~~~i~~~~~sp~g~~~~~~------------~~~~~~~~~~~~---~~~~~v~~~~~sp~  233 (378)
                      ..|+||+-. |.+..+-   .+--.+++|.|.|......            -+.+.....+..   +....|..+.|++|
T Consensus       237 R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~d  315 (928)
T PF04762_consen  237 RVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSD  315 (928)
T ss_pred             eEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCC
Confidence            479999864 6655444   3455788999999852111            112222222222   13567999999999


Q ss_pred             CCeEEEecCCCeEEEEE
Q 046394          234 EDVLGIGHSMGVSGILI  250 (378)
Q Consensus       234 g~~l~~~~~~g~~~~~~  250 (378)
                      +.+||+...+. +.+|.
T Consensus       316 s~iLAv~~~~~-vqLWt  331 (928)
T PF04762_consen  316 SEILAVWLEDR-VQLWT  331 (928)
T ss_pred             CCEEEEEecCC-ceEEE
Confidence            99999977666 45443

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.60  E-value=9.5e-07  Score=83.55  Aligned_cols=163  Identities=18%  Similarity=0.224  Sum_probs=107.1

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCeEEeeccCCC--eeEEEE---EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEc
Q 046394           57 GRYMAAAGCKGYPYFYNRDGTELHCSKEHGE--VLKLQF---LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVN  131 (378)
Q Consensus        57 g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~~l~~---~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s  131 (378)
                      +..++.|+-...+..+|..+........-..  +.-|..   ++.+|...|+|.+-|..+.+.+.++.            
T Consensus       147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~------------  214 (1118)
T KOG1275|consen  147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRYNNRNLFCGDTRGTVFLRDPNSFETIHTFD------------  214 (1118)
T ss_pred             CcceeecchhhheeeeecccceeeeeeeccCCceEEEEecCcEEEeecccceEEeecCCcCceeeeee------------
Confidence            3456666666677777765555444333222  455555   78888888999999998888888887            


Q ss_pred             CCCCEEEEEcCCCeeeecCCCEEEEEEecCCCEEEEEEC---------CCeEEEEEcCCceeeeee--c----------C
Q 046394          132 PFNGVVSLGHSGGTMLCHQGPVSALAFHPNGHLMATSGK---------DCKIKIWDLRKYEVLQTL--P----------G  190 (378)
Q Consensus       132 ~~~~~l~~~~~d~~~~~h~~~v~~~~~sp~g~~l~t~~~---------d~~i~iwd~~~~~~~~~~--~----------~  190 (378)
                                      +|.+.|.++..  .|+.|+|||.         |..|+|||+|+.+.+.-+  +          .
T Consensus       215 ----------------aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Ps  276 (1118)
T KOG1275|consen  215 ----------------AHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPS  276 (1118)
T ss_pred             ----------------ccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhccc
Confidence                            45555555444  4777777775         557999999987765544  1          1


Q ss_pred             Cc-eEEEEecCCCccccCCC---CC-ceEEEeeccCCcceeeeEEcCCCCeEEEecCCCeEEEEE
Q 046394          191 HA-KTLDFSRKDSGDFSGSH---NY-NRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILI  250 (378)
Q Consensus       191 ~i-~~~~~sp~g~~~~~~~~---~~-~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~  250 (378)
                      -. .-+..|..|...+.+..   .. ........ .+..+..+++|++|+.||.|..+|.+.+|.
T Consensus       277 l~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p-~~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  277 LTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNP-NGSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             ccceEEEEecccceeeccccccCCCccceeEEcc-CCCcceeEEecCCCceEEEecccCcEeeec
Confidence            11 22344566776555421   11 11222222 455699999999999999999999999887

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.60  E-value=2.7e-06  Score=71.89  Aligned_cols=195  Identities=11%  Similarity=0.078  Sum_probs=121.0

Q ss_pred             cCCCCceEEEEcCCCCEEEEEeCCCcEEEEeC--CCCeEE--eeccCC-----Ce-eEEEE------EEEEEeCCCeEEE
Q 046394           43 LPELGPYTLDFTSSGRYMAAAGCKGYPYFYNR--DGTELH--CSKEHG-----EV-LKLQF------LLASINKLGQLRY  106 (378)
Q Consensus        43 ~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~--~~~~~~--~~~~~~-----~~-~~l~~------~l~s~~~d~~i~i  106 (378)
                      +|+..|.+|.++.|+..++++ .|=.|.+|++  ..+...  -++.+.     .+ ++..|      .|+-++..|+|++
T Consensus       162 aHtyhiNSIS~NsD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrL  240 (433)
T KOG1354|consen  162 AHTYHINSISVNSDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRL  240 (433)
T ss_pred             cceeEeeeeeecCccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEE
Confidence            577789999999999888887 4668999993  333322  223222     24 66677      7777888899999


Q ss_pred             EEcCCCcE----EEEEe------------cCCCCeeEEEEcCCCCEEEEEcCCCe--------------eeec-------
Q 046394          107 QNVTMGEI----VGNFW------------TGLGRTDVIRVNPFNGVVSLGHSGGT--------------MLCH-------  149 (378)
Q Consensus       107 wd~~~~~~----~~~~~------------~~~~~v~~~~~s~~~~~l~~~~~d~~--------------~~~h-------  149 (378)
                      .|++....    ...+.            .--..|..+.|+++|+++++-.....              +.-|       
T Consensus       241 cDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~kL  320 (433)
T KOG1354|consen  241 CDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRSKL  320 (433)
T ss_pred             eechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCCcceEEeehHhHHHHH
Confidence            99985321    11111            11246889999999999998765443              1111       


Q ss_pred             -----CCCE---EEEEEecCCCEEEEEECCCeEEEEEcCCcee-eeeec--------CCceEEE-EecCCCccccCCCCC
Q 046394          150 -----QGPV---SALAFHPNGHLMATSGKDCKIKIWDLRKYEV-LQTLP--------GHAKTLD-FSRKDSGDFSGSHNY  211 (378)
Q Consensus       150 -----~~~v---~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~-~~~~~--------~~i~~~~-~sp~g~~~~~~~~~~  211 (378)
                           +..|   ..++|+.++.+++|||..+.+++|++..|.. ..+++        ..+..+. .++.|...-      
T Consensus       321 c~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~~k~~~V~~~g~r~~------  394 (433)
T KOG1354|consen  321 CSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKVLKLRLVSSSGKRKR------  394 (433)
T ss_pred             HHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCcceeecccccccCCcccccccceeeecCCCccc------
Confidence                 1222   4578999999999999999999999765543 22331        1111111 111121100      


Q ss_pred             ceEEEeeccCCcceeeeEEcCCCCeEEEecCCC
Q 046394          212 NRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMG  244 (378)
Q Consensus       212 ~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g  244 (378)
                      .-+..-.......|...+|+|....+|++..+.
T Consensus       395 ~~~~vd~ldf~kkilh~aWhp~en~ia~aatnn  427 (433)
T KOG1354|consen  395 DEISVDALDFRKKILHTAWHPKENSIAVAATNN  427 (433)
T ss_pred             cccccchhhhhhHHHhhccCCccceeeeeecCc
Confidence            000000011234577889999999999888875

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=98.60  E-value=4.3e-07  Score=79.92  Aligned_cols=177  Identities=15%  Similarity=0.129  Sum_probs=122.9

Q ss_pred             EeeccCCCe-eEEEE-----EEEEEeCCCeEEEEEcCCCcEEEEEe-cCCCCeeEEEEcCCC--CEEEEEcCCCe-----
Q 046394           80 HCSKEHGEV-LKLQF-----LLASINKLGQLRYQNVTMGEIVGNFW-TGLGRTDVIRVNPFN--GVVSLGHSGGT-----  145 (378)
Q Consensus        80 ~~~~~~~~~-~~l~~-----~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s~~~--~~l~~~~~d~~-----  145 (378)
                      ..|..|.+. +.+.|     .+++++.|..|.+||+..++....|. +|...|-...|-|..  ..+++.+.||.     
T Consensus       136 ~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~  215 (559)
T KOG1334|consen  136 KKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSE  215 (559)
T ss_pred             hcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeee
Confidence            456778887 88999     99999999999999999988877765 466666666777754  57777777776     


Q ss_pred             ------------eeecCCCEEEEEEecCC-CEEEEEECCCeEEEEEcCCceeeeee-----c-C---CceEEEEecCCCc
Q 046394          146 ------------MLCHQGPVSALAFHPNG-HLMATSGKDCKIKIWDLRKYEVLQTL-----P-G---HAKTLDFSRKDSG  203 (378)
Q Consensus       146 ------------~~~h~~~v~~~~~sp~g-~~l~t~~~d~~i~iwd~~~~~~~~~~-----~-~---~i~~~~~sp~g~~  203 (378)
                                  +..|.++|.-++.-|+. .-|.+++.|+.+.-+|++...+...+     . .   ...+++..|...+
T Consensus       216 i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~  295 (559)
T KOG1334|consen  216 ILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTN  295 (559)
T ss_pred             eccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCcc
Confidence                        56799999999999954 45999999999999999987664444     1 1   3467777776553


Q ss_pred             -----------cccCCCC------CceEEEeec-----cCCcceeeeEEcCCCCeEEEecCCCeEEEEEcCCCCc
Q 046394          204 -----------DFSGSHN------YNRYMGYSM-----VKGYQIGKVSFRPYEDVLGIGHSMGVSGILIPGSGEP  256 (378)
Q Consensus       204 -----------~~~~~~~------~~~~~~~~~-----~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~~~s~d~  256 (378)
                                 .+++.+.      ..++..+..     .....|+++.|+.++.-|.++..|-.+.++-+.-+++
T Consensus       296 ~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G  370 (559)
T KOG1334|consen  296 EFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDG  370 (559)
T ss_pred             ccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccC
Confidence                       2222111      011111111     1234599999998876666666665556665444454

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.60  E-value=2.8e-05  Score=79.38  Aligned_cols=138  Identities=14%  Similarity=0.098  Sum_probs=93.8

Q ss_pred             CceEEEEcC-CCCEEEEEeCCCcEEEEeCCCCeEEeeccC----------------CCeeEEEE------EEEEEeCCCe
Q 046394           47 GPYTLDFTS-SGRYMAAAGCKGYPYFYNRDGTELHCSKEH----------------GEVLKLQF------LLASINKLGQ  103 (378)
Q Consensus        47 ~v~~~~~sp-~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~----------------~~~~~l~~------~l~s~~~d~~  103 (378)
                      .+..++|+| ++..+++.+.++.|++||..+..+..+.+.                ..+..++|      ++++.+.++.
T Consensus       684 ~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~  763 (1057)
T PLN02919        684 SPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSS  763 (1057)
T ss_pred             CCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCe
Confidence            456899999 455566666788999999655444433221                11245666      5566667899


Q ss_pred             EEEEEcCCCcEEEEEec---------------------CCCCeeEEEEcCCCCEEEEEcCCCe-------------eee-
Q 046394          104 LRYQNVTMGEIVGNFWT---------------------GLGRTDVIRVNPFNGVVSLGHSGGT-------------MLC-  148 (378)
Q Consensus       104 i~iwd~~~~~~~~~~~~---------------------~~~~v~~~~~s~~~~~l~~~~~d~~-------------~~~-  148 (378)
                      |++||+.++.......+                     .......++++++|.++++-+.++.             +.+ 
T Consensus       764 Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~  843 (1057)
T PLN02919        764 IRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGT  843 (1057)
T ss_pred             EEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEecc
Confidence            99999987653211100                     0123468899999987777666655             111 


Q ss_pred             -------------cCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCcee
Q 046394          149 -------------HQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEV  184 (378)
Q Consensus       149 -------------h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~  184 (378)
                                   .-.....|+++++|+.+++-+.++.|++||+.+++.
T Consensus       844 G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        844 GKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             CCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence                         112467899999999999989999999999998765

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.60  E-value=1.1e-05  Score=71.20  Aligned_cols=182  Identities=15%  Similarity=0.119  Sum_probs=120.0

Q ss_pred             cCCCCEEEEEeCCCcEEEEeCCCCeEEeeccCC----Ce------eEEEE----------EEEEEeCCCeEEEEEcCCCc
Q 046394           54 TSSGRYMAAAGCKGYPYFYNRDGTELHCSKEHG----EV------LKLQF----------LLASINKLGQLRYQNVTMGE  113 (378)
Q Consensus        54 sp~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----~~------~~l~~----------~l~s~~~d~~i~iwd~~~~~  113 (378)
                      +.||+.|+.. ..|.|++||.+...+..+...-    ..      .-+.|          +++..|. |...|.+...+-
T Consensus       275 nsDGkrIvFq-~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~~~  352 (668)
T COG4946         275 NSDGKRIVFQ-NAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWDGY  352 (668)
T ss_pred             CCCCcEEEEe-cCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCCCe
Confidence            4577766654 5678999997766655543220    00      11111          5555554 667777765554


Q ss_pred             EEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe--------------eeecCCCEEEEEEecCCCEEEEEECCCeEEEEEc
Q 046394          114 IVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT--------------MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDL  179 (378)
Q Consensus       114 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~--------------~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~  179 (378)
                      .++.  ++.+.|.-..+.-++.-++.|..||.              +...-+.|.++..+|+|++++.+.....|.+.|+
T Consensus       353 ~iqv--~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vidi  430 (668)
T COG4946         353 SIQV--GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDI  430 (668)
T ss_pred             eEEc--CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEe
Confidence            4432  45667888888888888888988885              3445578999999999999999998889999999


Q ss_pred             CCceeeee--e-cCCceEEEEecCCCccccCCCCC---ceEEEeeccCC----------cceeeeEEcCCCCeEEEe
Q 046394          180 RKYEVLQT--L-PGHAKTLDFSRKDSGDFSGSHNY---NRYMGYSMVKG----------YQIGKVSFRPYEDVLGIG  240 (378)
Q Consensus       180 ~~~~~~~~--~-~~~i~~~~~sp~g~~~~~~~~~~---~~~~~~~~~~~----------~~v~~~~~sp~g~~l~~~  240 (378)
                      .++.....  - .+-|+...|||++++..+.-..+   +.+..+.+ .+          ..=.+-+|.|||++|..-
T Consensus       431 dngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm-~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfL  506 (668)
T COG4946         431 DNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDM-DGGKIYDVTTPTAYDFSPAFDPDGRYLYFL  506 (668)
T ss_pred             cCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEec-CCCeEEEecCCcccccCcccCCCCcEEEEE
Confidence            99876322  2 47899999999999744433222   11222222 12          223456788999887543

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=98.59  E-value=6.5e-07  Score=90.30  Aligned_cols=142  Identities=22%  Similarity=0.303  Sum_probs=88.5

Q ss_pred             EEEEEeCCCeEEEEEcCCCcEEEEEec-CCCCeeEEEEcCCCCEEEEEcCCCe-------------eeecCCCEEEEEEe
Q 046394           94 LLASINKLGQLRYQNVTMGEIVGNFWT-GLGRTDVIRVNPFNGVVSLGHSGGT-------------MLCHQGPVSALAFH  159 (378)
Q Consensus        94 ~l~s~~~d~~i~iwd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~d~~-------------~~~h~~~v~~~~~s  159 (378)
                      +.+||+.||.+++|....++.+..+.. .+..|+.+.|+..|+.+.++..||.             ...|+....++.|-
T Consensus      2222 ~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk~~~s~qchnk~~~Df~Fi 2301 (2439)
T KOG1064|consen 2222 YYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASPKPYTSWQCHNKALSDFRFI 2301 (2439)
T ss_pred             eEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCCcceeccccCCccccceeee
Confidence            889999999999999998888877764 2244455555555555444444444             22344444444443


Q ss_pred             cCCCEEEEEE---CCCeEEEEEcCCceeeeeecCCceEEEEecCCCccccCCCCCceEEEeeccCCcceeeeEEcCCCCe
Q 046394          160 PNGHLMATSG---KDCKIKIWDLRKYEVLQTLPGHAKTLDFSRKDSGDFSGSHNYNRYMGYSMVKGYQIGKVSFRPYEDV  236 (378)
Q Consensus       160 p~g~~l~t~~---~d~~i~iwd~~~~~~~~~~~~~i~~~~~sp~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~  236 (378)
                      .  ..+++++   .++.+.+||..-                            ....-..+.. |...++++++-|..+.
T Consensus      2302 ~--s~~~tag~s~d~~n~~lwDtl~----------------------------~~~~s~v~~~-H~~gaT~l~~~P~~ql 2350 (2439)
T KOG1064|consen 2302 G--SLLATAGRSSDNRNVCLWDTLL----------------------------PPMNSLVHTC-HDGGATVLAYAPKHQL 2350 (2439)
T ss_pred             e--hhhhccccCCCCCcccchhccc----------------------------Ccccceeeee-cCCCceEEEEcCcceE
Confidence            2  2333332   233444554321                            1111122344 7777888888888888


Q ss_pred             EEEecCCCeEE--------------------EEEcCCCCcccccccCCCc
Q 046394          237 LGIGHSMGVSG--------------------ILIPGSGEPNFDSWVANPF  266 (378)
Q Consensus       237 l~~~~~~g~~~--------------------~~~~~s~d~~i~~w~~~~~  266 (378)
                      |.+|+.+|.+.                    ++++|+..++++||.++.+
T Consensus      2351 lisggr~G~v~l~D~rqrql~h~~~~~~~~~~f~~~ss~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2351 LISGGRKGEVCLFDIRQRQLRHTFQALDTREYFVTGSSEGNIKIWRLSEF 2400 (2439)
T ss_pred             EEecCCcCcEEEeehHHHHHHHHhhhhhhhheeeccCcccceEEEEcccc
Confidence            88888888666                    4678899999999987654

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=98.58  E-value=8.7e-07  Score=73.24  Aligned_cols=164  Identities=16%  Similarity=0.107  Sum_probs=104.4

Q ss_pred             eEEEeccceeeeeecccc--eeeEEeecCCCCceEEEEcCCC-CEEEEEeCCCcEEEEeC--CCCeEEe-eccCC-CeeE
Q 046394           18 TWRIKQEAIAREVDILSS--RNQYDIMLPELGPYTLDFTSSG-RYMAAAGCKGYPYFYNR--DGTELHC-SKEHG-EVLK   90 (378)
Q Consensus        18 ~~~~~~~~~i~~~d~~~~--~~~~~l~~~~~~v~~~~~sp~g-~~l~~~~~dg~i~iwd~--~~~~~~~-~~~~~-~~~~   90 (378)
                      .+.--.++.+.+.+....  +++..++.|....+...|+... +.+++||.||.+..||.  .+..+.. .+-|. ++.+
T Consensus       136 i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~S  215 (339)
T KOG0280|consen  136 IFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVS  215 (339)
T ss_pred             EEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEE
Confidence            333334455555554444  3445788999999999998643 68999999999999994  3444332 33343 4455


Q ss_pred             EEE------EEEEEeCCCeEEEEEcC-CCcEEEEEecCCCCeeEEEEcCCCC--EEEEEcCCCe----------------
Q 046394           91 LQF------LLASINKLGQLRYQNVT-MGEIVGNFWTGLGRTDVIRVNPFNG--VVSLGHSGGT----------------  145 (378)
Q Consensus        91 l~~------~l~s~~~d~~i~iwd~~-~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~d~~----------------  145 (378)
                      +.-      +++||+.|-.|++||.+ -++++..-.. .+.|+.+.++|.-.  +++++-.+|.                
T Consensus       216 I~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v-~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~  294 (339)
T KOG0280|consen  216 IYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKV-GGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVL  294 (339)
T ss_pred             EecCCCCCceEEEeccccceeeeehhcccCccccCcc-ccceEEEEecchhhhHHHHHHHhcCceEEEecccccchheee
Confidence            544      99999999999999998 4677655432 37899999998543  2333222332                


Q ss_pred             --eeecCCCEEEEEEecCCCEEEEEE-CCCeEE-EEEcCCc
Q 046394          146 --MLCHQGPVSALAFHPNGHLMATSG-KDCKIK-IWDLRKY  182 (378)
Q Consensus       146 --~~~h~~~v~~~~~sp~g~~l~t~~-~d~~i~-iwd~~~~  182 (378)
                        ...|.+-+..-.|.....+|+||+ .|..++ +|-.-++
T Consensus       295 ~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~  335 (339)
T KOG0280|consen  295 PSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG  335 (339)
T ss_pred             eccccccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence              334544455555544445688876 466644 6654443

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.57  E-value=7.4e-05  Score=63.74  Aligned_cols=185  Identities=16%  Similarity=0.144  Sum_probs=110.9

Q ss_pred             EEEEcC-CCCEEEEEeCCCcEEEEeCCCCeEEeeccCCCeeEEEE-----EEEEEeCCCeEEEEEcCCCcEEEEEec---
Q 046394           50 TLDFTS-SGRYMAAAGCKGYPYFYNRDGTELHCSKEHGEVLKLQF-----LLASINKLGQLRYQNVTMGEIVGNFWT---  120 (378)
Q Consensus        50 ~~~~sp-~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~l~~-----~l~s~~~d~~i~iwd~~~~~~~~~~~~---  120 (378)
                      +++|.+ ++.++++-...+.|+.|+..+.....+.... +..+.+     .++.+...+ +.++|+.+++....+..   
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~-~~G~~~~~~~g~l~v~~~~~-~~~~d~~~g~~~~~~~~~~~   81 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG-PNGMAFDRPDGRLYVADSGG-IAVVDPDTGKVTVLADLPDG   81 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEESSS-EEEEEEECTTSEEEEEETTC-EEEEETTTTEEEEEEEEETT
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCC-CceEEEEccCCEEEEEEcCc-eEEEecCCCcEEEEeeccCC
Confidence            678888 6666666666889999997777665554443 555555     555555544 55569988865444332   


Q ss_pred             --CCCCeeEEEEcCCCCEEEEEcCCC--------e------------eeecCCCEEEEEEecCCCEEE-EEECCCeEEEE
Q 046394          121 --GLGRTDVIRVNPFNGVVSLGHSGG--------T------------MLCHQGPVSALAFHPNGHLMA-TSGKDCKIKIW  177 (378)
Q Consensus       121 --~~~~v~~~~~s~~~~~l~~~~~d~--------~------------~~~h~~~v~~~~~sp~g~~l~-t~~~d~~i~iw  177 (378)
                        ....++.+++.|+|++.++.....        .            +...-...+.|+|+|+++.|+ +-+..+.|..|
T Consensus        82 ~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~  161 (246)
T PF08450_consen   82 GVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPDGKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRF  161 (246)
T ss_dssp             CSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETTSEEEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEE
T ss_pred             CcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCCCeEEEEecCcccccceEECCcchheeecccccceeEEE
Confidence              345678899999999777654332        1            112233457899999998765 66678889999


Q ss_pred             EcCC-ce-e-----eeee-cC--CceEEEEecCCCccccCC---------CCCceEEEeeccCCcceeeeEEc-CCCCeE
Q 046394          178 DLRK-YE-V-----LQTL-PG--HAKTLDFSRKDSGDFSGS---------HNYNRYMGYSMVKGYQIGKVSFR-PYEDVL  237 (378)
Q Consensus       178 d~~~-~~-~-----~~~~-~~--~i~~~~~sp~g~~~~~~~---------~~~~~~~~~~~~~~~~v~~~~~s-p~g~~l  237 (378)
                      |+.. +. .     +..+ ..  .+..+++..+|.+.+...         ..+..+..+.. ....+++++|. |+...|
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~G~~~~~i~~-p~~~~t~~~fgg~~~~~L  240 (246)
T PF08450_consen  162 DLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPDGKLLREIEL-PVPRPTNCAFGGPDGKTL  240 (246)
T ss_dssp             EEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETTSCEEEEEE--SSSSEEEEEEESTTSSEE
T ss_pred             eccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCCccEEEEEcC-CCCCEEEEEEECCCCCEE
Confidence            9863 22 1     2222 22  367888988887532211         12444444444 33467777773 454433

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.54  E-value=1.4e-05  Score=71.09  Aligned_cols=142  Identities=11%  Similarity=0.082  Sum_probs=89.9

Q ss_pred             CeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcC-C-Ce-----------eeecCCCEEEEEEecCCCEEEEE
Q 046394          102 GQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHS-G-GT-----------MLCHQGPVSALAFHPNGHLMATS  168 (378)
Q Consensus       102 ~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d-~~-----------~~~h~~~v~~~~~sp~g~~l~t~  168 (378)
                      ..++|+++....+.... .-.++|...+|+|.++.+++.+. . ..           +......=..+.|+|.+++++.+
T Consensus       255 snLyl~~~~e~~i~V~~-~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl~~~~Pe~~rNT~~fsp~~r~il~a  333 (561)
T COG5354         255 SNLYLLRITERSIPVEK-DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNLRFYFPEQKRNTIFFSPHERYILFA  333 (561)
T ss_pred             ceEEEEeecccccceec-cccccceeeeecccCCceeEEecccccceeecccccceEEecCCcccccccccCcccEEEEe
Confidence            34566666533322222 44689999999999988777652 1 11           23333444667899999999998


Q ss_pred             ECC---CeEEEEEcCCcee-eeee-cCCceEEEEecCCCccccCCCCCc-----eEEEee--ccCCcceeeeEEcCCCCe
Q 046394          169 GKD---CKIKIWDLRKYEV-LQTL-PGHAKTLDFSRKDSGDFSGSHNYN-----RYMGYS--MVKGYQIGKVSFRPYEDV  236 (378)
Q Consensus       169 ~~d---~~i~iwd~~~~~~-~~~~-~~~i~~~~~sp~g~~~~~~~~~~~-----~~~~~~--~~~~~~v~~~~~sp~g~~  236 (378)
                      +-|   |.|-+||....-. +..+ ....+-+.|+|||.+...+.....     .+..+.  +......+.+.|.|.|++
T Consensus       334 gF~nl~gni~i~~~~~rf~~~~~~~~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~fel~~~~W~p~~~~  413 (561)
T COG5354         334 GFDNLQGNIEIFDPAGRFKVAGAFNGLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVFELTNITWDPSGQY  413 (561)
T ss_pred             cCCccccceEEeccCCceEEEEEeecCCceEeeccCCceEEEecCCCcccccCcceEEEEecCchhhhhhhccccCCccc
Confidence            876   4799999876444 4355 556667789999998444322211     122222  112234678899999988


Q ss_pred             EEEecCCC
Q 046394          237 LGIGHSMG  244 (378)
Q Consensus       237 l~~~~~~g  244 (378)
                      ..+.+..+
T Consensus       414 ~ttsSs~~  421 (561)
T COG5354         414 VTTSSSCP  421 (561)
T ss_pred             ceeeccCC
Confidence            77666654

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.50  E-value=0.00017  Score=60.06  Aligned_cols=196  Identities=14%  Similarity=0.119  Sum_probs=104.9

Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEeC-CC--CeEEeeccCC--Ce--eEEEE-----EEEEEeCCCeEEEEEcCCCcEEEEE
Q 046394           51 LDFTSSGRYMAAAGCKGYPYFYNR-DG--TELHCSKEHG--EV--LKLQF-----LLASINKLGQLRYQNVTMGEIVGNF  118 (378)
Q Consensus        51 ~~~sp~g~~l~~~~~dg~i~iwd~-~~--~~~~~~~~~~--~~--~~l~~-----~l~s~~~d~~i~iwd~~~~~~~~~~  118 (378)
                      ++.+++|+.||+- .|..|.|-.. +.  ..+.....+.  .+  ..++|     +||.+...|+|+++|+.. ..+..+
T Consensus         3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I   80 (282)
T PF15492_consen    3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVI   80 (282)
T ss_pred             eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEc
Confidence            5678899988876 5667777662 21  2222222222  22  78888     899999999999999854 333333


Q ss_pred             ecC-------CCCeeEEEEcCCC------CEEEEEcCCCe---------------------e-eecCCCEEEEEEecCCC
Q 046394          119 WTG-------LGRTDVIRVNPFN------GVVSLGHSGGT---------------------M-LCHQGPVSALAFHPNGH  163 (378)
Q Consensus       119 ~~~-------~~~v~~~~~s~~~------~~l~~~~~d~~---------------------~-~~h~~~v~~~~~sp~g~  163 (378)
                      ...       ...|..+.|-+..      ..|++-...|.                     + ..+...|.++.++|..+
T Consensus        81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~  160 (282)
T PF15492_consen   81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHR  160 (282)
T ss_pred             CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCC
Confidence            321       1334445454321      12332222222                     2 12467899999999988


Q ss_pred             EEEEEECCC-----------eEEEEEcCCceeeeee-cCCceEEEEecCCCccccCCCCCceEEEeeccCCcceeeeEEc
Q 046394          164 LMATSGKDC-----------KIKIWDLRKYEVLQTL-PGHAKTLDFSRKDSGDFSGSHNYNRYMGYSMVKGYQIGKVSFR  231 (378)
Q Consensus       164 ~l~t~~~d~-----------~i~iwd~~~~~~~~~~-~~~i~~~~~sp~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  231 (378)
                      +|+.||...           -+.-|-+-++.+-... ...-..+.-++. +..++.......+. ..+.....|..|..|
T Consensus       161 LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~-~~~~~~~~~~~~fs-~~~~~~d~i~kmSlS  238 (282)
T PF15492_consen  161 LLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSK-RRGLLRIPSFKFFS-RQGQEQDGIFKMSLS  238 (282)
T ss_pred             EEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCcccccccc-ccceeeccceeeee-ccccCCCceEEEEEC
Confidence            887776432           1334443333322211 000000000000 00111111111111 112245679999999


Q ss_pred             CCCCeEEEecCCCeEEEEE
Q 046394          232 PYEDVLGIGHSMGVSGILI  250 (378)
Q Consensus       232 p~g~~l~~~~~~g~~~~~~  250 (378)
                      |||..||+.+.+|.+.+|.
T Consensus       239 Pdg~~La~ih~sG~lsLW~  257 (282)
T PF15492_consen  239 PDGSLLACIHFSGSLSLWE  257 (282)
T ss_pred             CCCCEEEEEEcCCeEEEEe
Confidence            9999999999998766664

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.50  E-value=3.1e-06  Score=68.92  Aligned_cols=143  Identities=13%  Similarity=0.106  Sum_probs=88.0

Q ss_pred             EEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCCC--eEEee-ccCCCeeEEEE----EEEEEeCCC------eEE
Q 046394           39 YDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGT--ELHCS-KEHGEVLKLQF----LLASINKLG------QLR  105 (378)
Q Consensus        39 ~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~--~~~~~-~~~~~~~~l~~----~l~s~~~d~------~i~  105 (378)
                      +.+..|++.-.+-+.+--++-+++++.||.+.+++.+..  ..+.+ ..|.+..+.++    .++.++.-|      ..+
T Consensus        83 ~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~  162 (319)
T KOG4714|consen   83 KVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFY  162 (319)
T ss_pred             eeeeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeecccee
Confidence            334444444334444445677999999999999984331  00111 11222112222    333333333      344


Q ss_pred             EEEcCCCcEEEEEecCCCCeeEEEEcCCC-CEEEEEcCCCe---------------eeecCCCEEEEEEec-CCCEEEEE
Q 046394          106 YQNVTMGEIVGNFWTGLGRTDVIRVNPFN-GVVSLGHSGGT---------------MLCHQGPVSALAFHP-NGHLMATS  168 (378)
Q Consensus       106 iwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~d~~---------------~~~h~~~v~~~~~sp-~g~~l~t~  168 (378)
                      +|+++..+....-......|.+++-+|.. .++++|+.+|.               +..|+.++.-+-|+| ++..|+++
T Consensus       163 a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~  242 (319)
T KOG4714|consen  163 ANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTC  242 (319)
T ss_pred             eecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEe
Confidence            55554322211111123448999999976 56777888887               778999999999999 78889999


Q ss_pred             ECCCeEEEEEcCC
Q 046394          169 GKDCKIKIWDLRK  181 (378)
Q Consensus       169 ~~d~~i~iwd~~~  181 (378)
                      +.||.+.-||..+
T Consensus       243 sedGslw~wdas~  255 (319)
T KOG4714|consen  243 SEDGSLWHWDAST  255 (319)
T ss_pred             cCCCcEEEEcCCC
Confidence            9999999999865

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.50  E-value=6.7e-07  Score=78.06  Aligned_cols=253  Identities=9%  Similarity=-0.040  Sum_probs=152.1

Q ss_pred             eeeEEEeccceeeeeecccc---eeeEEeecCCCCceEEEEcCCCCEEEEEeC-CCcEEEEeCCCCe-EEeeccCCCeeE
Q 046394           16 EKTWRIKQEAIAREVDILSS---RNQYDIMLPELGPYTLDFTSSGRYMAAAGC-KGYPYFYNRDGTE-LHCSKEHGEVLK   90 (378)
Q Consensus        16 ~~~~~~~~~~~i~~~d~~~~---~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~-dg~i~iwd~~~~~-~~~~~~~~~~~~   90 (378)
                      +-.+..+-|+.++.|--..-   +-+..+..|-..+.+++.+-+|.++.+++. |..++++|+.... +..++-..-+-.
T Consensus        21 ~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~  100 (558)
T KOG0882|consen   21 KFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGF  100 (558)
T ss_pred             heEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCc
Confidence            33444455566666654321   223345667777889999999999999777 9999999943222 211111111112


Q ss_pred             EEE----------EEEEEeCCCeEEEEEcCCCc--EEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe-------------
Q 046394           91 LQF----------LLASINKLGQLRYQNVTMGE--IVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT-------------  145 (378)
Q Consensus        91 l~~----------~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~-------------  145 (378)
                      +.|          +-++.-.++.+.++|-....  ....-..|..+|.++.++|.+..+.+....|.             
T Consensus       101 a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfP  180 (558)
T KOG0882|consen  101 AEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFP  180 (558)
T ss_pred             eEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCc
Confidence            222          33344467889999976543  23333457899999999999988887775554             


Q ss_pred             ----------------eeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeeecCCceEEEEecCCCccccCCC
Q 046394          146 ----------------MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHAKTLDFSRKDSGDFSGSH  209 (378)
Q Consensus       146 ----------------~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~~~~i~~~~~sp~g~~~~~~~~  209 (378)
                                      +........++.|+|+|..+.+.+.|..|+++++.+|++++.+....+...+-|...+.+....
T Consensus       181 r~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~Ve  260 (558)
T KOG0882|consen  181 RTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVE  260 (558)
T ss_pred             cccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceee
Confidence                            2233456789999999999999999999999999999998887222222222222222221111


Q ss_pred             CCc---eEEEeeccCCcceeeeEEcCCCCeEEEecCCCeEEEE-------EcCCCCcccccccCCCccc
Q 046394          210 NYN---RYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGIL-------IPGSGEPNFDSWVANPFET  268 (378)
Q Consensus       210 ~~~---~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~-------~~~s~d~~i~~w~~~~~~~  268 (378)
                      -+.   .-..+.-+....-+.+.|...|.+|+.|+-=|+-.+-       -.-+.|..+|+-.+..|+.
T Consensus       261 lgRRmaverelek~~~~~~~~~~fdes~~flly~t~~gikvin~~tn~v~ri~gk~e~ir~~~~sl~q~  329 (558)
T KOG0882|consen  261 LGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILGIKVINLDTNTVVRILGKDEAIRFTRLSLYQG  329 (558)
T ss_pred             hhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecceeEEEEEeecCeEEEEeccchhhhhhhHHHHhh
Confidence            111   1111111123345678899999999988877743221       1123344666655544443

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.47  E-value=3e-06  Score=80.31  Aligned_cols=152  Identities=13%  Similarity=0.234  Sum_probs=111.7

Q ss_pred             cceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeeccCCCe-eEEEE---EEEEE
Q 046394           24 EAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKEHGEV-LKLQF---LLASI   98 (378)
Q Consensus        24 ~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~-~~l~~---~l~s~   98 (378)
                      .+.+-.+|+.+.+.........++|.-|+.  +++++.+|...|+|.+-| .+-+.++++.+|.+. .++..   +|++|
T Consensus       156 Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv~GNlLitC  233 (1118)
T KOG1275|consen  156 QEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDVQGNLLITC  233 (1118)
T ss_pred             hhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceeeeeccCCeEEEe
Confidence            445556788888877777766667777765  478999999999999999 456778999999987 77777   88888


Q ss_pred             eC---------CCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCC-CEEEEEcCCCe------------------eeecC
Q 046394           99 NK---------LGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFN-GVVSLGHSGGT------------------MLCHQ  150 (378)
Q Consensus        99 ~~---------d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~d~~------------------~~~h~  150 (378)
                      |.         |.-|+|||++.-+.+.-+..+.++ .-+.|.|.- ..+++++..|.                  +....
T Consensus       234 G~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~  312 (1118)
T KOG1275|consen  234 GYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNG  312 (1118)
T ss_pred             ecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCC
Confidence            75         456789999876544433322222 456677754 45565555554                  12223


Q ss_pred             CCEEEEEEecCCCEEEEEECCCeEEEEE
Q 046394          151 GPVSALAFHPNGHLMATSGKDCKIKIWD  178 (378)
Q Consensus       151 ~~v~~~~~sp~g~~l~t~~~d~~i~iwd  178 (378)
                      ..+..+++|++|+.++.+..+|.|.+|-
T Consensus       313 s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  313 SGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             CcceeEEecCCCceEEEecccCcEeeec
Confidence            4488999999999999999999999997

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.44  E-value=0.00013  Score=66.57  Aligned_cols=227  Identities=10%  Similarity=-0.039  Sum_probs=128.4

Q ss_pred             ceeeEEEeccceeeeeecccceeeEEeecCCCCceE-EEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeeccCCCe----
Q 046394           15 VEKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYT-LDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKEHGEV----   88 (378)
Q Consensus        15 ~~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~-~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~----   88 (378)
                      .+..|....++.+..+|..+++.++..... ..+.+ ...  .+..++.++.+|.|+.|| .+|..+..+......    
T Consensus       105 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~  181 (377)
T TIGR03300       105 GGLVFVGTEKGEVIALDAEDGKELWRAKLS-SEVLSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLR  181 (377)
T ss_pred             CCEEEEEcCCCEEEEEECCCCcEeeeeccC-ceeecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeec
Confidence            345565667889999999999998877654 22221 112  245677788899999999 477777665443321    


Q ss_pred             --eEEEE---EEEEEeCCCeEEEEEcCCCcEEEEEecCCC----C---eeEEEEcC--CCCEEEEEcCCCeeee---cCC
Q 046394           89 --LKLQF---LLASINKLGQLRYQNVTMGEIVGNFWTGLG----R---TDVIRVNP--FNGVVSLGHSGGTMLC---HQG  151 (378)
Q Consensus        89 --~~l~~---~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~----~---v~~~~~s~--~~~~l~~~~~d~~~~~---h~~  151 (378)
                        .+...   .++.+..++.+..+|+.+|+.+........    .   ...+.-+|  .+..+++++.++.+..   ..+
T Consensus       182 ~~~sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG  261 (377)
T TIGR03300       182 GSASPVIADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSG  261 (377)
T ss_pred             CCCCCEEECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCC
Confidence              11122   667778889999999999987765432110    0   00011111  2445555555555111   111


Q ss_pred             C-EEE------EEEecCCCEEEEEECCCeEEEEEcCCceeeeee---cC-CceE--------EEEecCCCccccCCCCCc
Q 046394          152 P-VSA------LAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL---PG-HAKT--------LDFSRKDSGDFSGSHNYN  212 (378)
Q Consensus       152 ~-v~~------~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~---~~-~i~~--------~~~sp~g~~~~~~~~~~~  212 (378)
                      . +..      ......+..++.++.||.|..+|..+++.+...   .. ...+        +..+.+|...+++..+++
T Consensus       262 ~~~W~~~~~~~~~p~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i~g~~l~~~~~~G~l~~~d~~tG~  341 (377)
T TIGR03300       262 RVLWKRDASSYQGPAVDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAVVGGYLVVGDFEGYLHWLSREDGS  341 (377)
T ss_pred             cEEEeeccCCccCceEeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEEECCEEEEEeCCCEEEEEECCCCC
Confidence            1 000      011124667888889999999999999876544   11 1111        222445666666666676


Q ss_pred             eEEEeeccCCcceeeeEEcCCCCeEEEecCCCeE
Q 046394          213 RYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVS  246 (378)
Q Consensus       213 ~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~  246 (378)
                      .+..+.. +...+..--...+ ..|.+++.+|.+
T Consensus       342 ~~~~~~~-~~~~~~~sp~~~~-~~l~v~~~dG~l  373 (377)
T TIGR03300       342 FVARLKT-DGSGIASPPVVVG-DGLLVQTRDGDL  373 (377)
T ss_pred             EEEEEEc-CCCccccCCEEEC-CEEEEEeCCceE
Confidence            6666554 3322222211223 346666667643

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.44  E-value=7.5e-07  Score=74.23  Aligned_cols=133  Identities=13%  Similarity=0.259  Sum_probs=78.9

Q ss_pred             CCceEEEEcCCCCEEEEEeCCCcEEEEeCCC------CeEEeeccCCC-------------eeEEEE-------EEEEEe
Q 046394           46 LGPYTLDFTSSGRYMAAAGCKGYPYFYNRDG------TELHCSKEHGE-------------VLKLQF-------LLASIN   99 (378)
Q Consensus        46 ~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~------~~~~~~~~~~~-------------~~~l~~-------~l~s~~   99 (378)
                      .-|+++.|...|.||++|...|.|.+|....      .....+++|..             +..+.|       .++..+
T Consensus        27 d~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlst  106 (460)
T COG5170          27 DKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLST  106 (460)
T ss_pred             ceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEec
Confidence            5688999999999999999999999998322      11233455532             245566       667778


Q ss_pred             CCCeEEEEEcCCCcE--EE------EEec-CCCCeeEE------EEcCCCCEEEEEcCCCe-eeecCCCEEEEEEecCCC
Q 046394          100 KLGQLRYQNVTMGEI--VG------NFWT-GLGRTDVI------RVNPFNGVVSLGHSGGT-MLCHQGPVSALAFHPNGH  163 (378)
Q Consensus       100 ~d~~i~iwd~~~~~~--~~------~~~~-~~~~v~~~------~~s~~~~~l~~~~~d~~-~~~h~~~v~~~~~sp~g~  163 (378)
                      .|.+|++|.+.....  +.      .+.. ..+++++.      ..+... .++++..-+. -..|...|.++.|+.|..
T Consensus       107 NdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd-~iiaa~p~rvyaNaH~yhiNSiS~NsD~e  185 (460)
T COG5170         107 NDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHD-EIIAAKPCRVYANAHPYHINSISFNSDKE  185 (460)
T ss_pred             CCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccc-eEEEeccceeccccceeEeeeeeecCchh
Confidence            999999998865421  11      0100 01111111      111111 1222222222 246777888888888877


Q ss_pred             EEEEEECCCeEEEEEcC
Q 046394          164 LMATSGKDCKIKIWDLR  180 (378)
Q Consensus       164 ~l~t~~~d~~i~iwd~~  180 (378)
                      .++++. |=.|.+|++.
T Consensus       186 t~lSaD-dLrINLWnl~  201 (460)
T COG5170         186 TLLSAD-DLRINLWNLE  201 (460)
T ss_pred             eeeecc-ceeeeecccc
Confidence            776654 5567777764

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.42  E-value=0.00033  Score=59.31  Aligned_cols=139  Identities=14%  Similarity=0.096  Sum_probs=95.7

Q ss_pred             cceeeeeecccceeeEEeecCC--CCceEEEEcCCCCEEEEEeCCCcEEEEeC-CCCeEEeeccCCCe-eEEEE---EEE
Q 046394           24 EAIAREVDILSSRNQYDIMLPE--LGPYTLDFTSSGRYMAAAGCKGYPYFYNR-DGTELHCSKEHGEV-LKLQF---LLA   96 (378)
Q Consensus        24 ~~~i~~~d~~~~~~~~~l~~~~--~~v~~~~~sp~g~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~-~~l~~---~l~   96 (378)
                      ++.|..||..+++.++......  ....+. ..+++..+++++.++.|+.||. +|..+..+...... .....   .++
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~v~   80 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVVDGGRVY   80 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEEETTEEE
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeeecccccc
Confidence            5788999999999999987622  222221 3335667888889999999994 88888877764443 32222   666


Q ss_pred             EEeCCCeEEEEEcCCCcEEEEE-ecCCCCeeEEEEcCCCCEEEEEcCCCeeeecCCCEEEEEEecCCCEEEEEECCCeEE
Q 046394           97 SINKLGQLRYQNVTMGEIVGNF-WTGLGRTDVIRVNPFNGVVSLGHSGGTMLCHQGPVSALAFHPNGHLMATSGKDCKIK  175 (378)
Q Consensus        97 s~~~d~~i~iwd~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~d~~~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~  175 (378)
                      .++.++.|..+|..+|+.+..+ ......                        .. ....+.....+..++.+..++.|.
T Consensus        81 v~~~~~~l~~~d~~tG~~~W~~~~~~~~~------------------------~~-~~~~~~~~~~~~~~~~~~~~g~l~  135 (238)
T PF13360_consen   81 VGTSDGSLYALDAKTGKVLWSIYLTSSPP------------------------AG-VRSSSSPAVDGDRLYVGTSSGKLV  135 (238)
T ss_dssp             EEETTSEEEEEETTTSCEEEEEEE-SSCT------------------------CS-TB--SEEEEETTEEEEEETCSEEE
T ss_pred             cccceeeeEecccCCcceeeeeccccccc------------------------cc-cccccCceEecCEEEEEeccCcEE
Confidence            6668889999999999998874 322110                        00 111222222377888888899999


Q ss_pred             EEEcCCceeeeee
Q 046394          176 IWDLRKYEVLQTL  188 (378)
Q Consensus       176 iwd~~~~~~~~~~  188 (378)
                      .+|+.+|+.+..+
T Consensus       136 ~~d~~tG~~~w~~  148 (238)
T PF13360_consen  136 ALDPKTGKLLWKY  148 (238)
T ss_dssp             EEETTTTEEEEEE
T ss_pred             EEecCCCcEEEEe
Confidence            9999999998777

...

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.38  E-value=0.00041  Score=58.76  Aligned_cols=170  Identities=14%  Similarity=0.119  Sum_probs=110.2

Q ss_pred             ceeeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEee-ccCC---C--
Q 046394           15 VEKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCS-KEHG---E--   87 (378)
Q Consensus        15 ~~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~-~~~~---~--   87 (378)
                      ....|....++.+..||..+++.++..... ..+.... ..++..+++++.++.|+.+| .+|..+... ....   .  
T Consensus        36 ~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~-~~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~  113 (238)
T PF13360_consen   36 GGRVYVASGDGNLYALDAKTGKVLWRFDLP-GPISGAP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVR  113 (238)
T ss_dssp             TTEEEEEETTSEEEEEETTTSEEEEEEECS-SCGGSGE-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEEEEeecc-cccccee-eecccccccccceeeeEecccCCcceeeeeccccccccccc
Confidence            445555568999999999999999888873 3332221 22355677777888999999 788888874 3321   1  


Q ss_pred             e-eEEEE---EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCe----------eEEEEcCCCCEEEEEcCCCe---eeecC
Q 046394           88 V-LKLQF---LLASINKLGQLRYQNVTMGEIVGNFWTGLGRT----------DVIRVNPFNGVVSLGHSGGT---MLCHQ  150 (378)
Q Consensus        88 ~-~~l~~---~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v----------~~~~~s~~~~~l~~~~~d~~---~~~h~  150 (378)
                      . ....+   .++.+..++.|..+|+.+|+.+..........          ..-....++ .+++++.++.   +....
T Consensus       114 ~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~t  192 (238)
T PF13360_consen  114 SSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLAT  192 (238)
T ss_dssp             --SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTT
T ss_pred             cccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCC
Confidence            1 33444   67777789999999999999988887643221          122222234 6666665552   21111


Q ss_pred             CC------EEEE-E-EecCCCEEEEEECCCeEEEEEcCCceeeee
Q 046394          151 GP------VSAL-A-FHPNGHLMATSGKDCKIKIWDLRKYEVLQT  187 (378)
Q Consensus       151 ~~------v~~~-~-~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~  187 (378)
                      +.      +..+ . ..+++..|+.++.++.|.+||+.+|+.+.+
T Consensus       193 g~~~w~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~d~~tG~~~W~  237 (238)
T PF13360_consen  193 GEKLWSKPISGIYSLPSVDGGTLYVTSSDGRLYALDLKTGKVVWQ  237 (238)
T ss_dssp             TEEEEEECSS-ECECEECCCTEEEEEETTTEEEEEETTTTEEEEE
T ss_pred             CCEEEEecCCCccCCceeeCCEEEEEeCCCEEEEEECCCCCEEeE
Confidence            11      1111 1 345677888888999999999999987643

...

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.37  E-value=4.6e-05  Score=72.14  Aligned_cols=151  Identities=15%  Similarity=0.111  Sum_probs=105.3

Q ss_pred             EEcCCCCEEEEEeCCCcEEEEeCCCCeEEeeccCCCe--eEEEE-----EEEEEeCCC-----eEEEEEcCCC------c
Q 046394           52 DFTSSGRYMAAAGCKGYPYFYNRDGTELHCSKEHGEV--LKLQF-----LLASINKLG-----QLRYQNVTMG------E  113 (378)
Q Consensus        52 ~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~l~~-----~l~s~~~d~-----~i~iwd~~~~------~  113 (378)
                      +|++.+..++.|+.+|.|.+++..-..++.++++...  ..+..     +|++.+.|+     .|+|||++..      +
T Consensus        30 c~~s~~~~vvigt~~G~V~~Ln~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~  109 (933)
T KOG2114|consen   30 CCSSSTGSVVIGTADGRVVILNSSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQ  109 (933)
T ss_pred             EEcCCCceEEEeeccccEEEecccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcc
Confidence            4567788999999999999999766666777666543  22211     566655543     5899998642      3


Q ss_pred             EE---EEEe----cCCCCeeEEEEcCCCCEEEEEcCCCe------------------eeecCCCEEEEEEecCCCEEEEE
Q 046394          114 IV---GNFW----TGLGRTDVIRVNPFNGVVSLGHSGGT------------------MLCHQGPVSALAFHPNGHLMATS  168 (378)
Q Consensus       114 ~~---~~~~----~~~~~v~~~~~s~~~~~l~~~~~d~~------------------~~~h~~~v~~~~~sp~g~~l~t~  168 (378)
                      ++   +.+.    ..+.++.+++.+.+-..+++|-.+|.                  .....++|+.+++..++..++-+
T Consensus       110 c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv  189 (933)
T KOG2114|consen  110 CLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFV  189 (933)
T ss_pred             eeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEE
Confidence            34   2222    13567889999999999999999998                  23345789999999988875545


Q ss_pred             ECCCeEEEEEcCCcee-eeee---cCCceEEEEecCCC
Q 046394          169 GKDCKIKIWDLRKYEV-LQTL---PGHAKTLDFSRKDS  202 (378)
Q Consensus       169 ~~d~~i~iwd~~~~~~-~~~~---~~~i~~~~~sp~g~  202 (378)
                      .....|.+|.+....+ ...+   +.+.+|.+|++...
T Consensus       190 ~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~  227 (933)
T KOG2114|consen  190 ATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTY  227 (933)
T ss_pred             EecceeEEEEecCCCcceeeeccCCccceeeecCCCCc
Confidence            5556799999874333 3334   45678888877554

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.36  E-value=1.6e-06  Score=74.69  Aligned_cols=94  Identities=13%  Similarity=0.004  Sum_probs=72.6

Q ss_pred             ceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCC-CCeEEee-ccCCCe-eEEEE----EEEE
Q 046394           25 AIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRD-GTELHCS-KEHGEV-LKLQF----LLAS   97 (378)
Q Consensus        25 ~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~-~~~~~~~-~~~~~~-~~l~~----~l~s   97 (378)
                      ..+.+|.... .+...+-+|-.-++.++|+||+++|+++..|..|+|-... ...+..+ -||... ..++.    .|++
T Consensus       132 ~~~di~s~~~-~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~~LlS  210 (390)
T KOG3914|consen  132 YSFDILSADS-GRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNYLLLS  210 (390)
T ss_pred             eeeeeecccc-cCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCceeee
Confidence            3444455544 3345567888889999999999999999999999998743 3344443 468774 77777    7899


Q ss_pred             EeCCCeEEEEEcCCCcEEEEEe
Q 046394           98 INKLGQLRYQNVTMGEIVGNFW  119 (378)
Q Consensus        98 ~~~d~~i~iwd~~~~~~~~~~~  119 (378)
                      +|.|++|++||+.+|+.+.++.
T Consensus       211 ~sGD~tlr~Wd~~sgk~L~t~d  232 (390)
T KOG3914|consen  211 GSGDKTLRLWDITSGKLLDTCD  232 (390)
T ss_pred             cCCCCcEEEEecccCCcccccc
Confidence            9999999999999999887665

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.34  E-value=1.4e-06  Score=78.13  Aligned_cols=173  Identities=13%  Similarity=0.151  Sum_probs=109.6

Q ss_pred             eEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeC--CC------CeEEeeccCCCe-eEEEE---EEEEEeCCCeEE
Q 046394           38 QYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNR--DG------TELHCSKEHGEV-LKLQF---LLASINKLGQLR  105 (378)
Q Consensus        38 ~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~--~~------~~~~~~~~~~~~-~~l~~---~l~s~~~d~~i~  105 (378)
                      ...+.+|+..|..++--.+.+.+++++.|.+|++|.+  .|      .+..++..|..+ .++.|   +-..++.||-|.
T Consensus       728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~ScD~giH  807 (1034)
T KOG4190|consen  728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASCDGGIH  807 (1034)
T ss_pred             eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeeccCcce
Confidence            4567889998988877677788999999999999993  22      356778899887 88988   334456789999


Q ss_pred             EEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCeeeecCCCEEEEEEec--CCCE-EEEEECCCeEEEEEcCCc
Q 046394          106 YQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGTMLCHQGPVSALAFHP--NGHL-MATSGKDCKIKIWDLRKY  182 (378)
Q Consensus       106 iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~~~~h~~~v~~~~~sp--~g~~-l~t~~~d~~i~iwd~~~~  182 (378)
                      +||.--+.++..+....                         . .+.+..+..-|  +... ++.|+...+|+++|.+.+
T Consensus       808 lWDPFigr~Laq~~dap-------------------------k-~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsc  861 (1034)
T KOG4190|consen  808 LWDPFIGRLLAQMEDAP-------------------------K-EGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSC  861 (1034)
T ss_pred             eecccccchhHhhhcCc-------------------------c-cCCCceeEecccCcchheeeeccchhhheeeecccc
Confidence            99987777665443211                         1 11222222223  2333 344577889999999986


Q ss_pred             eeeeeecCCceEEEEecCCCccccCCCCCceEEEeeccCCcceeeeEEcCCCCeEEEecCCCeEEEEEcCCCCccccccc
Q 046394          183 EVLQTLPGHAKTLDFSRKDSGDFSGSHNYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILIPGSGEPNFDSWV  262 (378)
Q Consensus       183 ~~~~~~~~~i~~~~~sp~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~~~s~d~~i~~w~  262 (378)
                      .-...+                        .+..-.+ ....+.+++..|.|.+||++-++|.+.++.+-.+ ..|..|.
T Consensus       862 e~~~E~------------------------kVcna~~-Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G-~vINswr  915 (1034)
T KOG4190|consen  862 EWTCEL------------------------KVCNAPG-PNALTRAIAVADKGNKLAAALSNGCIAILDARNG-KVINSWR  915 (1034)
T ss_pred             cceeeE------------------------EeccCCC-CchheeEEEeccCcchhhHHhcCCcEEEEecCCC-ceeccCC
Confidence            644332                        0000111 2234666777777777777777776655543222 2245554

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.32  E-value=1.3e-05  Score=74.18  Aligned_cols=202  Identities=7%  Similarity=0.006  Sum_probs=112.5

Q ss_pred             eEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEe-ec-cCCCe-eEEEE-----EEEEEeCCCeEEEEE
Q 046394           38 QYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHC-SK-EHGEV-LKLQF-----LLASINKLGQLRYQN  108 (378)
Q Consensus        38 ~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~-~~-~~~~~-~~l~~-----~l~s~~~d~~i~iwd  108 (378)
                      -.++.+|...|..+.|+-+.+.|-++..+|-|.||- ..|.=... +. ....+ .+++|     .++..-.||.|.+=.
T Consensus        64 NQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGs  143 (1189)
T KOG2041|consen   64 NQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGS  143 (1189)
T ss_pred             hhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEe
Confidence            356889999999999999888899999999999998 33321111 11 11122 66666     444444555554443


Q ss_pred             cCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe-------------------------eeecCCCEEEEEEe----
Q 046394          109 VTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT-------------------------MLCHQGPVSALAFH----  159 (378)
Q Consensus       109 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~-------------------------~~~h~~~v~~~~~s----  159 (378)
                      +. |..+.--.........+.|++|...++.+-.+|.                         +......|..+.|.    
T Consensus       144 vd-GNRIwgKeLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~  222 (1189)
T KOG2041|consen  144 VD-GNRIWGKELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPY  222 (1189)
T ss_pred             ec-cceecchhcchheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCcc
Confidence            32 2211111111123346778887765555444443                         11112224444443    


Q ss_pred             ----cCCCEEEEEECCCeEEEEEcCCceeeeee--cCCceEEEEecCCCcccc------------------CCCCCceEE
Q 046394          160 ----PNGHLMATSGKDCKIKIWDLRKYEVLQTL--PGHAKTLDFSRKDSGDFS------------------GSHNYNRYM  215 (378)
Q Consensus       160 ----p~g~~l~t~~~d~~i~iwd~~~~~~~~~~--~~~i~~~~~sp~g~~~~~------------------~~~~~~~~~  215 (378)
                          |+.-.|+.|-..|.+.|---.+...-..+  +..+..+.|+++|.....                  -+.-+..+.
T Consensus       223 ~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~G~i~g  302 (1189)
T KOG2041|consen  223 QPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPYGHIVG  302 (1189)
T ss_pred             ccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEecccEeecceecCCCcEEEEccCcccccCccccceEEEeccchhheE
Confidence                36667777777777666432221111112  456677788888875111                  112233444


Q ss_pred             EeeccCCcceeeeEEcCCCCeEEEec
Q 046394          216 GYSMVKGYQIGKVSFRPYEDVLGIGH  241 (378)
Q Consensus       216 ~~~~~~~~~v~~~~~sp~g~~l~~~~  241 (378)
                      .++. .+..|++++|-..|-.+|.+.
T Consensus       303 tlkv-pg~~It~lsWEg~gLriA~Av  327 (1189)
T KOG2041|consen  303 TLKV-PGSCITGLSWEGTGLRIAIAV  327 (1189)
T ss_pred             EEec-CCceeeeeEEcCCceEEEEEe
Confidence            5555 677789999987776655543

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.32  E-value=3.1e-06  Score=78.49  Aligned_cols=190  Identities=13%  Similarity=0.168  Sum_probs=121.9

Q ss_pred             eecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe--CCCCeEEeeccCCCe--eEEEE-------EEEEE
Q 046394           30 VDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN--RDGTELHCSKEHGEV--LKLQF-------LLASI   98 (378)
Q Consensus        30 ~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd--~~~~~~~~~~~~~~~--~~l~~-------~l~s~   98 (378)
                      ||-.|-.+...+... +++.++..+|.|+-+|.++..| +++.|  ..+.+..-+...+..  ....|       +.++.
T Consensus        10 yns~tf~kslsl~v~-~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVs   87 (1081)
T KOG0309|consen   10 YNSPTFGKSLSLKVD-GGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVS   87 (1081)
T ss_pred             CCCCccCceeEEEec-CcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEe
Confidence            444455555666664 7888999999999999998887 55666  344554444433322  44444       33333


Q ss_pred             eCCCeEEEEEcCCC--cEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCeeeecCCCEEEEEEecC-CCEEEEEECCCeEE
Q 046394           99 NKLGQLRYQNVTMG--EIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGTMLCHQGPVSALAFHPN-GHLMATSGKDCKIK  175 (378)
Q Consensus        99 ~~d~~i~iwd~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~~~~h~~~v~~~~~sp~-g~~l~t~~~d~~i~  175 (378)
                      .....-.+|++...  +.+ .|.                          +.+|...|+.+.|+|+ ...+++++.|-.+.
T Consensus        88 ts~qkaiiwnlA~ss~~aI-ef~--------------------------lhghsraitd~n~~~q~pdVlatcsvdt~vh  140 (1081)
T KOG0309|consen   88 TSNQKAIIWNLAKSSSNAI-EFV--------------------------LHGHSRAITDINFNPQHPDVLATCSVDTYVH  140 (1081)
T ss_pred             cCcchhhhhhhhcCCccce-EEE--------------------------EecCccceeccccCCCCCcceeeccccccce
Confidence            33344557776432  111 121                          3489999999999994 45789999999999


Q ss_pred             EEEcCCc-eeeeee---cCCceEEEEecCCC----------ccccCCC-CCceEEEeeccCCcceeeeEEcCCC-CeEEE
Q 046394          176 IWDLRKY-EVLQTL---PGHAKTLDFSRKDS----------GDFSGSH-NYNRYMGYSMVKGYQIGKVSFRPYE-DVLGI  239 (378)
Q Consensus       176 iwd~~~~-~~~~~~---~~~i~~~~~sp~g~----------~~~~~~~-~~~~~~~~~~~~~~~v~~~~~sp~g-~~l~~  239 (378)
                      .||+++- .++..+   +...+.+.|+-...          ..+|+.+ ...++...++ |...|+.+.|..-- ..+.+
T Consensus       141 ~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~-~vs~vn~~~fnr~~~s~~~s  219 (1081)
T KOG0309|consen  141 AWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKG-HVSSVNSIDFNRFKYSEIMS  219 (1081)
T ss_pred             eeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecc-cceeeehHHHhhhhhhhhcc
Confidence            9999984 345555   67777888865322          2666654 4456777777 77888888886543 24455


Q ss_pred             ecCCCeEEEE
Q 046394          240 GHSMGVSGIL  249 (378)
Q Consensus       240 ~~~~g~~~~~  249 (378)
                      ++.||++.+|
T Consensus       220 ~~~d~tvkfw  229 (1081)
T KOG0309|consen  220 SSNDGTVKFW  229 (1081)
T ss_pred             cCCCCceeee
Confidence            5556655555

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.30  E-value=2.8e-05  Score=73.43  Aligned_cols=219  Identities=17%  Similarity=0.122  Sum_probs=140.3

Q ss_pred             CCceEEEEcCCCCEEEEEeC----CCcEEEEeCCCCeEEeeccCCCeeEEEE-----EEEEEeCCCeEEEEEcCCCcEEE
Q 046394           46 LGPYTLDFTSSGRYMAAAGC----KGYPYFYNRDGTELHCSKEHGEVLKLQF-----LLASINKLGQLRYQNVTMGEIVG  116 (378)
Q Consensus        46 ~~v~~~~~sp~g~~l~~~~~----dg~i~iwd~~~~~~~~~~~~~~~~~l~~-----~l~s~~~d~~i~iwd~~~~~~~~  116 (378)
                      ...+-+.|+|...++|+++.    .|.|.||--+|.+.....-.-.+++++|     .|+.|-.-|.+.+|...+.+.-.
T Consensus        16 avsti~SWHPsePlfAVA~fS~er~GSVtIfadtGEPqr~Vt~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~ht   95 (1416)
T KOG3617|consen   16 AVSTISSWHPSEPLFAVASFSPERGGSVTIFADTGEPQRDVTYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHT   95 (1416)
T ss_pred             ccccccccCCCCceeEEEEecCCCCceEEEEecCCCCCcccccceehhhhccChHHHHHhhccccceeEEEecCCceeee
Confidence            33446789999999888765    6789999877876554443334477899     78888888999999987766655


Q ss_pred             EEecCCCCeeEEEEcCCCCEEEEEcCCCe-----------------------------------------------eeec
Q 046394          117 NFWTGLGRTDVIRVNPFNGVVSLGHSGGT-----------------------------------------------MLCH  149 (378)
Q Consensus       117 ~~~~~~~~v~~~~~s~~~~~l~~~~~d~~-----------------------------------------------~~~h  149 (378)
                      ....|+.++..+.|||+|..+.++..-|.                                               ..+.
T Consensus        96 v~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgD  175 (1416)
T KOG3617|consen   96 VVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGD  175 (1416)
T ss_pred             eccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhhhhhhccCc
Confidence            56678999999999999999999988776                                               0010


Q ss_pred             CCCE------------EEE--EEecCCCEEEEEECCCeEEEEEcCCcee--eeee--------c---CCc--------eE
Q 046394          150 QGPV------------SAL--AFHPNGHLMATSGKDCKIKIWDLRKYEV--LQTL--------P---GHA--------KT  194 (378)
Q Consensus       150 ~~~v------------~~~--~~sp~g~~l~t~~~d~~i~iwd~~~~~~--~~~~--------~---~~i--------~~  194 (378)
                      ...+            .++  .=.|+|..|..++.+|+|+--|-. |.+  +..+        +   ..+        .+
T Consensus       176 e~alD~~fnwk~~~a~rs~~ksgv~~g~~F~~~~~~GtVyyvdq~-g~~~~V~k~dS~vQmLf~~~~eai~~i~e~lr~~  254 (1416)
T KOG3617|consen  176 ESALDEPFNWKESLAERSDEKSGVPKGTEFLFAGKSGTVYYVDQN-GRQRTVHKLDSEVQMLFMGYCEAISIIIEFLRDC  254 (1416)
T ss_pred             hhhhcccccCccchhhccccccCCCCCcEEEEEcCCceEEEEcCC-CcEEEEEEccchHHHHHhcccceEEEEeeeceee
Confidence            0000            001  113678888889999988877743 222  2222        1   111        11


Q ss_pred             EEEe-cCCCc------cccCC---CCC--------ce---EEEeeccCCcceeeeEEcCCCCeEEEecCCCeEEEEEcC-
Q 046394          195 LDFS-RKDSG------DFSGS---HNY--------NR---YMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILIPG-  252 (378)
Q Consensus       195 ~~~s-p~g~~------~~~~~---~~~--------~~---~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~~~-  252 (378)
                      +.|. |.|..      .+...   +.+        ..   -..+....+..+++++++..+..|..|.+.|.+.+|.-. 
T Consensus       255 l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEssGvLr~~eKyg~e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~  334 (1416)
T KOG3617|consen  255 LIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESSGVLRKSEKYGLELGEGILCMCYGEKEIRLWAGTKEGNVTIWLDVN  334 (1416)
T ss_pred             EEEecCCCchHHhhhhhhccccCCccCccccccccccccCCcchhhhcCCceEEEEEeccceEEEecccCCcEEEeeecC
Confidence            2222 22321      11100   000        00   001111135679999999999999999999998888633 


Q ss_pred             C---CCcccccccCCC
Q 046394          253 S---GEPNFDSWVANP  265 (378)
Q Consensus       253 s---~d~~i~~w~~~~  265 (378)
                      +   ++.++..|..+.
T Consensus       335 ~~f~g~p~~d~w~l~~  350 (1416)
T KOG3617|consen  335 KGFQGDPTIDVWTLNG  350 (1416)
T ss_pred             ccccCCCCcceEEecC
Confidence            2   477888997654

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.28  E-value=9.4e-06  Score=72.94  Aligned_cols=136  Identities=18%  Similarity=0.154  Sum_probs=89.8

Q ss_pred             EEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe------------eeecCCCEEEEEEecCCCEEEEEEC-
Q 046394          104 LRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT------------MLCHQGPVSALAFHPNGHLMATSGK-  170 (378)
Q Consensus       104 i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~------------~~~h~~~v~~~~~sp~g~~l~t~~~-  170 (378)
                      .-.|+.....+...-....-.-+-+.|||.|.+|++-...|.            -..|. .|.-+.|||..+||+|=|. 
T Consensus       192 svfwN~~~n~p~~ie~RenWTetyv~wSP~GTYL~t~Hk~GI~lWGG~~f~r~~RF~Hp-~Vq~idfSP~EkYLVT~s~~  270 (698)
T KOG2314|consen  192 SVFWNSKFNEPSLIEERENWTETYVRWSPKGTYLVTFHKQGIALWGGESFDRIQRFYHP-GVQFIDFSPNEKYLVTYSPE  270 (698)
T ss_pred             EEEccccCCchhhhhhhhcceeeeEEecCCceEEEEEeccceeeecCccHHHHHhccCC-CceeeecCCccceEEEecCC
Confidence            456765433222221222234567899999999999888887            22343 5788999999999998653 


Q ss_pred             ----------CCeEEEEEcCCceeeeeec------CCceEEEEecCCCcc---------ccCCCCCceEEEeeccCCcce
Q 046394          171 ----------DCKIKIWDLRKYEVLQTLP------GHAKTLDFSRKDSGD---------FSGSHNYNRYMGYSMVKGYQI  225 (378)
Q Consensus       171 ----------d~~i~iwd~~~~~~~~~~~------~~i~~~~~sp~g~~~---------~~~~~~~~~~~~~~~~~~~~v  225 (378)
                                ...++|||+++|...+.++      ....-..||.|+++.         ++......++-.-.. .-..|
T Consensus       271 p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~lld~Ksl-ki~gI  349 (698)
T KOG2314|consen  271 PIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFMLLDKKSL-KISGI  349 (698)
T ss_pred             ccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCceeeeccccc-CCccc
Confidence                      1479999999999988881      123556899999873         233322222221111 33458


Q ss_pred             eeeEEcCCCCeEEEec
Q 046394          226 GKVSFRPYEDVLGIGH  241 (378)
Q Consensus       226 ~~~~~sp~g~~l~~~~  241 (378)
                      ....|||.+.+||.-.
T Consensus       350 r~FswsP~~~llAYwt  365 (698)
T KOG2314|consen  350 RDFSWSPTSNLLAYWT  365 (698)
T ss_pred             cCcccCCCcceEEEEc
Confidence            8999999999988644

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.26  E-value=0.00059  Score=67.40  Aligned_cols=164  Identities=12%  Similarity=0.145  Sum_probs=105.2

Q ss_pred             eEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCC----------------------
Q 046394           18 TWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRD----------------------   75 (378)
Q Consensus        18 ~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~----------------------   75 (378)
                      .+.+...|.+.+.|.++..... ...-..+|.+++||||+..++..+..+++.+...+                      
T Consensus        83 i~v~~~~G~iilvd~et~~~ei-vg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~V  161 (1265)
T KOG1920|consen   83 ICVITALGDIILVDPETLELEI-VGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNV  161 (1265)
T ss_pred             EEEEecCCcEEEEcccccceee-eeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhcccccccccccccccee
Confidence            4445556777777777665432 22235789999999999999988888888776521                      


Q ss_pred             --CCeEEeeccC----------------------CCeeEEEE-----EEEEE----eCC-CeEEEEEcCCCcEEEEEecC
Q 046394           76 --GTELHCSKEH----------------------GEVLKLQF-----LLASI----NKL-GQLRYQNVTMGEIVGNFWTG  121 (378)
Q Consensus        76 --~~~~~~~~~~----------------------~~~~~l~~-----~l~s~----~~d-~~i~iwd~~~~~~~~~~~~~  121 (378)
                        |..-..+++.                      ..-+.+.|     ++|+.    ..+ ..|++||-+ |..-..-...
T Consensus       162 GwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~  240 (1265)
T KOG1920|consen  162 GWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPV  240 (1265)
T ss_pred             cccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcc
Confidence              1111122211                      11245788     55552    234 789999976 5543333334


Q ss_pred             CCCeeEEEEcCCCCEEEEEcCCCe--------------------eeecCCCEEEEEEecCCCEEEE---EECCCeEEEEE
Q 046394          122 LGRTDVIRVNPFNGVVSLGHSGGT--------------------MLCHQGPVSALAFHPNGHLMAT---SGKDCKIKIWD  178 (378)
Q Consensus       122 ~~~v~~~~~s~~~~~l~~~~~d~~--------------------~~~h~~~v~~~~~sp~g~~l~t---~~~d~~i~iwd  178 (378)
                      .+.-.+++|-|.|..+++-.....                    +......|..++|+.++..|++   +.....|++|-
T Consensus       241 ~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt  320 (1265)
T KOG1920|consen  241 EGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWT  320 (1265)
T ss_pred             cccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEE
Confidence            455578999999999888654443                    1111234889999999999887   44455699999


Q ss_pred             cCCce
Q 046394          179 LRKYE  183 (378)
Q Consensus       179 ~~~~~  183 (378)
                      +.+..
T Consensus       321 ~~Nyh  325 (1265)
T KOG1920|consen  321 TGNYH  325 (1265)
T ss_pred             ecCeE
Confidence            88754

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.24  E-value=0.0003  Score=59.21  Aligned_cols=148  Identities=16%  Similarity=0.150  Sum_probs=85.7

Q ss_pred             EeecCCCCceEEEEcCCCC-EEEEEeCCCcEEEEeCCCCeEEeec--cCCCeeEEEE-----EEEEEeCCCeEEEEEcCC
Q 046394           40 DIMLPELGPYTLDFTSSGR-YMAAAGCKGYPYFYNRDGTELHCSK--EHGEVLKLQF-----LLASINKLGQLRYQNVTM  111 (378)
Q Consensus        40 ~l~~~~~~v~~~~~sp~g~-~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~~l~~-----~l~s~~~d~~i~iwd~~~  111 (378)
                      .+.+-...+.+|+|+|+.. ++++....+.|..++.+|..+..+.  +..+.-.+++     ++++.-.++.+.++++..
T Consensus        16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~   95 (248)
T PF06977_consen   16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDD   95 (248)
T ss_dssp             E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE--
T ss_pred             ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEec
Confidence            4444445699999999765 5566666888888899898887754  3344577888     455544689999998843


Q ss_pred             Cc------EEEEEe-----cCCCCeeEEEEcCCCCEEEEEcCCCe-----e--------------------eecCCCEEE
Q 046394          112 GE------IVGNFW-----TGLGRTDVIRVNPFNGVVSLGHSGGT-----M--------------------LCHQGPVSA  155 (378)
Q Consensus       112 ~~------~~~~~~-----~~~~~v~~~~~s~~~~~l~~~~~d~~-----~--------------------~~h~~~v~~  155 (378)
                      ..      .+..+.     .++..+-.++|+|.++.|+++-....     +                    ......+.+
T Consensus        96 ~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~  175 (248)
T PF06977_consen   96 DTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSG  175 (248)
T ss_dssp             --TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---E
T ss_pred             cccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccc
Confidence            21      122222     13345889999998876666543322     0                    012234678


Q ss_pred             EEEec-CCCEEEEEECCCeEEEEEcCCceeeeee
Q 046394          156 LAFHP-NGHLMATSGKDCKIKIWDLRKYEVLQTL  188 (378)
Q Consensus       156 ~~~sp-~g~~l~t~~~d~~i~iwd~~~~~~~~~~  188 (378)
                      ++++| .|++++.+..+..|.++| .+|+++..+
T Consensus       176 l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~  208 (248)
T PF06977_consen  176 LSYDPRTGHLLILSDESRLLLELD-RQGRVVSSL  208 (248)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEE--TT--EEEEE
T ss_pred             eEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEE
Confidence            88999 456667777788888888 566665543

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.21  E-value=0.0027  Score=54.13  Aligned_cols=167  Identities=18%  Similarity=0.214  Sum_probs=107.6

Q ss_pred             cceeeeeecccceeeEEeecCCCCceEEEEc-CCCCEEEEEeCCCcEEEEeCCCCeEEeeccC-----CC--eeEEEE--
Q 046394           24 EAIAREVDILSSRNQYDIMLPELGPYTLDFT-SSGRYMAAAGCKGYPYFYNRDGTELHCSKEH-----GE--VLKLQF--   93 (378)
Q Consensus        24 ~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~s-p~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----~~--~~~l~~--   93 (378)
                      .+.|..|+..++.... +...  .+.++++. +++ .|+++... .+.++|.....+..+...     ..  ++.+++  
T Consensus        21 ~~~i~~~~~~~~~~~~-~~~~--~~~G~~~~~~~g-~l~v~~~~-~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~   95 (246)
T PF08450_consen   21 GGRIYRVDPDTGEVEV-IDLP--GPNGMAFDRPDG-RLYVADSG-GIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDP   95 (246)
T ss_dssp             TTEEEEEETTTTEEEE-EESS--SEEEEEEECTTS-EEEEEETT-CEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-T
T ss_pred             CCEEEEEECCCCeEEE-EecC--CCceEEEEccCC-EEEEEEcC-ceEEEecCCCcEEEEeeccCCCcccCCCceEEEcC
Confidence            5677778877765532 3333  27788888 665 45555554 466669554443332211     22  378888  


Q ss_pred             ---EEEEEeCC--------CeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEc-CCCe----------------
Q 046394           94 ---LLASINKL--------GQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGH-SGGT----------------  145 (378)
Q Consensus        94 ---~l~s~~~d--------~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~----------------  145 (378)
                         ++++....        |.|..++.. ++..... ......+.|+|+|+++.|+++. ..+.                
T Consensus        96 ~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~-~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~  173 (246)
T PF08450_consen   96 DGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVA-DGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNR  173 (246)
T ss_dssp             TS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEE-EEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEE
T ss_pred             CCCEEEEecCCCccccccccceEEECCC-CeEEEEe-cCcccccceEECCcchheeecccccceeEEEeccccccceeee
Confidence               55554433        567777776 5543333 3346788999999999776544 3333                


Q ss_pred             --eee-cC--CCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee--c-CCceEEEEe
Q 046394          146 --MLC-HQ--GPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL--P-GHAKTLDFS  198 (378)
Q Consensus       146 --~~~-h~--~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~--~-~~i~~~~~s  198 (378)
                        +.. ..  +..-.+++.++|++.++....+.|.++|.. |+.+..+  + ..+++++|.
T Consensus       174 ~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fg  233 (246)
T PF08450_consen  174 RVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFG  233 (246)
T ss_dssp             EEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEE
T ss_pred             eeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEE
Confidence              111 11  236679999999988888889999999987 8888877  4 688999995

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.19  E-value=0.0014  Score=60.08  Aligned_cols=172  Identities=18%  Similarity=0.215  Sum_probs=104.9

Q ss_pred             ceeeEEEeccceeeeeecccceeeEEeecCCC-Cc---------e-EEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEee
Q 046394           15 VEKTWRIKQEAIAREVDILSSRNQYDIMLPEL-GP---------Y-TLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCS   82 (378)
Q Consensus        15 ~~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~-~v---------~-~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~   82 (378)
                      .++.|....++.+..+|..+++.++....... ..         . .+..  ++..++.++.+|.++.+| .+|+.+...
T Consensus        69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~  146 (394)
T PRK11138         69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGEVAWQT  146 (394)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCCCCCcccc
Confidence            45667777788999999999999888765421 00         0 1111  345677888899999999 578888776


Q ss_pred             ccCCCe-eEEEE---EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeE-EEEcC--CCCEEEEEcCCCeeee---cCC-
Q 046394           83 KEHGEV-LKLQF---LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDV-IRVNP--FNGVVSLGHSGGTMLC---HQG-  151 (378)
Q Consensus        83 ~~~~~~-~~l~~---~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~-~~~s~--~~~~l~~~~~d~~~~~---h~~-  151 (378)
                      ...... .....   .++.+..++.|..+|..+|+.+..+......+.. ..-+|  .+..++.++.++.+..   ..+ 
T Consensus       147 ~~~~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~  226 (394)
T PRK11138        147 KVAGEALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQ  226 (394)
T ss_pred             cCCCceecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEccCCh
Confidence            655443 22222   6666778899999999999998877543111000 00011  1223444444443100   000 


Q ss_pred             -----------------CEEEEEEec--CCCEEEEEECCCeEEEEEcCCceeeeee
Q 046394          152 -----------------PVSALAFHP--NGHLMATSGKDCKIKIWDLRKYEVLQTL  188 (378)
Q Consensus       152 -----------------~v~~~~~sp--~g~~l~t~~~d~~i~iwd~~~~~~~~~~  188 (378)
                                       ....+..+|  .+..++.++.++.+..+|+.+|+.+...
T Consensus       227 ~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~  282 (394)
T PRK11138        227 LIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKR  282 (394)
T ss_pred             hhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEee
Confidence                             001111233  3456777778999999999999877655

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.18  E-value=0.00026  Score=66.52  Aligned_cols=230  Identities=14%  Similarity=0.130  Sum_probs=151.6

Q ss_pred             ceeeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcC-CCCEEEEEeCCCcEEEEeC--------CCCeEEeeccC
Q 046394           15 VEKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTS-SGRYMAAAGCKGYPYFYNR--------DGTELHCSKEH   85 (378)
Q Consensus        15 ~~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp-~g~~l~~~~~dg~i~iwd~--------~~~~~~~~~~~   85 (378)
                      .+-...+.....+-+|+..+|++.+..........|+.+.| |.+.+..-+..|.+.+-+.        .|.....-..|
T Consensus       125 rd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~  204 (1062)
T KOG1912|consen  125 RDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDH  204 (1062)
T ss_pred             hheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCc
Confidence            35566778888999999999999999888767777899999 5677777777888888773        12232222222


Q ss_pred             CC----------------e-eEEEE--------------EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCC
Q 046394           86 GE----------------V-LKLQF--------------LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFN  134 (378)
Q Consensus        86 ~~----------------~-~~l~~--------------~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~  134 (378)
                      .+                . .+..|              .++.......+.++|++-..++.......+.+.-+.+-|++
T Consensus       205 Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~  284 (1062)
T KOG1912|consen  205 SDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDP  284 (1062)
T ss_pred             cchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCC
Confidence            11                0 11222              22223345678999998888888877777777778888877


Q ss_pred             C--EEEEEcCCCe-------------------------------------------------------------------
Q 046394          135 G--VVSLGHSGGT-------------------------------------------------------------------  145 (378)
Q Consensus       135 ~--~l~~~~~d~~-------------------------------------------------------------------  145 (378)
                      +  .|++...||.                                                                   
T Consensus       285 ~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~  364 (1062)
T KOG1912|consen  285 RRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLS  364 (1062)
T ss_pred             CcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhh
Confidence            4  7888888887                                                                   


Q ss_pred             --------------------------------------eeecCCCEEEEEEec-----------CCC-------EEEEEE
Q 046394          146 --------------------------------------MLCHQGPVSALAFHP-----------NGH-------LMATSG  169 (378)
Q Consensus       146 --------------------------------------~~~h~~~v~~~~~sp-----------~g~-------~l~t~~  169 (378)
                                                            ..+|....++....|           .|+       ++|.|.
T Consensus       365 ~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT  444 (1062)
T KOG1912|consen  365 NGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGT  444 (1062)
T ss_pred             cCCcCcccccccccccccccccCceeehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEEeec
Confidence                                                  233555554444332           222       467889


Q ss_pred             CCCeEEEEEcCCceeeeee---cCCceEEEEecCCCc-------------------cccCCCCC--ceEEEeeccCCcce
Q 046394          170 KDCKIKIWDLRKYEVLQTL---PGHAKTLDFSRKDSG-------------------DFSGSHNY--NRYMGYSMVKGYQI  225 (378)
Q Consensus       170 ~d~~i~iwd~~~~~~~~~~---~~~i~~~~~sp~g~~-------------------~~~~~~~~--~~~~~~~~~~~~~v  225 (378)
                      ..|+|.++|+.++.....+   .+.|.++.|--...+                   .+.+.+++  ..+...+.+...+|
T Consensus       445 ~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~despI  524 (1062)
T KOG1912|consen  445 NSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKPDESPI  524 (1062)
T ss_pred             CCceEEEEEecchhhhhhhcccccceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccccccccccCCCCCcCcc
Confidence            9999999999998876666   355666666443332                   22222222  23333444467889


Q ss_pred             eeeEEcCCCCeEEEecCCC
Q 046394          226 GKVSFRPYEDVLGIGHSMG  244 (378)
Q Consensus       226 ~~~~~sp~g~~l~~~~~~g  244 (378)
                      ..+..|..|+||+....+.
T Consensus       525 ~~irvS~~~~yLai~Fr~~  543 (1062)
T KOG1912|consen  525 RAIRVSSSGRYLAILFRRE  543 (1062)
T ss_pred             eeeeecccCceEEEEeccc
Confidence            9999999999987665554

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.13  E-value=2.9e-06  Score=80.28  Aligned_cols=138  Identities=14%  Similarity=0.086  Sum_probs=99.9

Q ss_pred             EEeeccCCCe-eEEEE-----EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe-------
Q 046394           79 LHCSKEHGEV-LKLQF-----LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT-------  145 (378)
Q Consensus        79 ~~~~~~~~~~-~~l~~-----~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~-------  145 (378)
                      ..+++.|... ++++|     .|+.|+..|.|+++++.+|........|...++.+.-+.+|..+++.+....       
T Consensus      1094 w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~ 1173 (1516)
T KOG1832|consen 1094 WRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWD 1173 (1516)
T ss_pred             chhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhc
Confidence            4556777766 99999     9999999999999999999999999999999999999999987777665444       


Q ss_pred             -----eeecC-CCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee-------cCCceEEEEecCCCc-----cccC
Q 046394          146 -----MLCHQ-GPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL-------PGHAKTLDFSRKDSG-----DFSG  207 (378)
Q Consensus       146 -----~~~h~-~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~-------~~~i~~~~~sp~g~~-----~~~~  207 (378)
                           -..|. ..-.++.|+..-..-+.|+......|||+.++.++.++       ...-++..|||+...     .+|+
T Consensus      1174 ~~s~~~~~Hsf~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIlndGvLWD 1253 (1516)
T KOG1832|consen 1174 ASSTGGPRHSFDEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLILNDGVLWD 1253 (1516)
T ss_pred             cccccCccccccccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEeeCceeee
Confidence                 11122 12346778775444445555566889999998888775       123478899998876     3444


Q ss_pred             CCCCceEEE
Q 046394          208 SHNYNRYMG  216 (378)
Q Consensus       208 ~~~~~~~~~  216 (378)
                      .+..+.+..
T Consensus      1254 vR~~~aIh~ 1262 (1516)
T KOG1832|consen 1254 VRIPEAIHR 1262 (1516)
T ss_pred             eccHHHHhh
Confidence            444444433

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.06  E-value=0.006  Score=52.43  Aligned_cols=170  Identities=15%  Similarity=0.060  Sum_probs=108.1

Q ss_pred             ceEEEEcC-CCCEEEEEeCCCc-EEEEe-CCCCeEEeeccCCCe---eEEEE-----EEEEE-----eCCCeEEEEEcC-
Q 046394           48 PYTLDFTS-SGRYMAAAGCKGY-PYFYN-RDGTELHCSKEHGEV---LKLQF-----LLASI-----NKLGQLRYQNVT-  110 (378)
Q Consensus        48 v~~~~~sp-~g~~l~~~~~dg~-i~iwd-~~~~~~~~~~~~~~~---~~l~~-----~l~s~-----~~d~~i~iwd~~-  110 (378)
                      ...++.+| .+..++.+-.-|. ..+|| .++.....+....+-   -.-.|     +|++.     ...|.|-|||.. 
T Consensus         7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~   86 (305)
T PF07433_consen    7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAAR   86 (305)
T ss_pred             ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcC
Confidence            34678888 4556777777665 67788 566666665544332   22344     44443     335889999998 


Q ss_pred             CCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe----------------------------------e--eecCCCEE
Q 046394          111 MGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT----------------------------------M--LCHQGPVS  154 (378)
Q Consensus       111 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~----------------------------------~--~~h~~~v~  154 (378)
                      +.+.+..+..+.-....+.+.|||..|+++...-.                                  +  .-|...|.
T Consensus        87 ~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiR  166 (305)
T PF07433_consen   87 GYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIR  166 (305)
T ss_pred             CcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcccccccee
Confidence            66788889888777888999999987777643222                                  2  33566788


Q ss_pred             EEEEecCCCEEEEEECCC-------eEEEEEcCCceeeeee----------cCCceEEEEecCCCccccCCCCCceEEEe
Q 046394          155 ALAFHPNGHLMATSGKDC-------KIKIWDLRKYEVLQTL----------PGHAKTLDFSRKDSGDFSGSHNYNRYMGY  217 (378)
Q Consensus       155 ~~~~sp~g~~l~t~~~d~-------~i~iwd~~~~~~~~~~----------~~~i~~~~~sp~g~~~~~~~~~~~~~~~~  217 (378)
                      .++++++|..++..-..|       .|-+++..  ..+..+          ...+-+|+++++|......+.....+..|
T Consensus       167 HLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g--~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~  244 (305)
T PF07433_consen  167 HLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRG--GALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVW  244 (305)
T ss_pred             eEEecCCCcEEEEEecCCCCCccCCeEEEEcCC--CcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEE
Confidence            888888887666554444       24444332  222222          45678888888887655544555555555


Q ss_pred             ec
Q 046394          218 SM  219 (378)
Q Consensus       218 ~~  219 (378)
                      ..
T Consensus       245 d~  246 (305)
T PF07433_consen  245 DA  246 (305)
T ss_pred             EC
Confidence            33

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.05  E-value=0.0047  Score=51.01  Aligned_cols=122  Identities=15%  Similarity=0.076  Sum_probs=87.9

Q ss_pred             ceeeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeeccCCCe---eE
Q 046394           15 VEKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKEHGEV---LK   90 (378)
Q Consensus        15 ~~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~---~~   90 (378)
                      ..-.+..+..+.+...|..+|...+.--.. ..+-+-+.- -|++++.|+..|.+++.+ .+|.....+.....+   ..
T Consensus        23 kT~v~igSHs~~~~avd~~sG~~~We~ilg-~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~  100 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILG-VRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQ  100 (354)
T ss_pred             ceEEEEecCCceEEEecCCCCcEEeehhhC-ceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceE
Confidence            344455567899999999999887765442 233322222 377899999999999999 567677777665544   44


Q ss_pred             EEE---EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcC-CCCEEE
Q 046394           91 LQF---LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNP-FNGVVS  138 (378)
Q Consensus        91 l~~---~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~  138 (378)
                      ++|   ++..++.|++.+..|..+..++...+-..+...+.+..| ++.+++
T Consensus       101 ~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~  152 (354)
T KOG4649|consen  101 CDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYA  152 (354)
T ss_pred             EcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEE
Confidence            555   899999999999999999999888776666666667777 444433

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.04  E-value=0.00012  Score=63.60  Aligned_cols=86  Identities=5%  Similarity=-0.053  Sum_probs=67.9

Q ss_pred             eeeeecccceeeEEeecCCCCceEEEEcCCCC-EEEEEeCCCcEEEEeC-CCCeEEeeccCCCeeEEEE------EEEEE
Q 046394           27 AREVDILSSRNQYDIMLPELGPYTLDFTSSGR-YMAAAGCKGYPYFYNR-DGTELHCSKEHGEVLKLQF------LLASI   98 (378)
Q Consensus        27 i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~-~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~~~l~~------~l~s~   98 (378)
                      ++..+..+.....-+..|...|..++|||..+ ++..++.+..|.|.|+ +...+..+..+..+.+++|      +++.|
T Consensus       175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaG  254 (463)
T KOG1645|consen  175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAG  254 (463)
T ss_pred             eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEe
Confidence            44455555555555677777899999999877 7888889999999995 4455667778877799999      88899


Q ss_pred             eCCCeEEEEEcCCC
Q 046394           99 NKLGQLRYQNVTMG  112 (378)
Q Consensus        99 ~~d~~i~iwd~~~~  112 (378)
                      ..+|.|.|||++..
T Consensus       255 l~nG~VlvyD~R~~  268 (463)
T KOG1645|consen  255 LQNGMVLVYDMRQP  268 (463)
T ss_pred             ccCceEEEEEccCC
Confidence            99999999999864

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=98.04  E-value=0.00028  Score=68.51  Aligned_cols=118  Identities=9%  Similarity=-0.041  Sum_probs=82.5

Q ss_pred             cceeeeeecccceeeEEeecCCCCceEEEEcCC-------CCEEEEEeCCCcEEEEe--CCCCeEEeeccCC-----Cee
Q 046394           24 EAIAREVDILSSRNQYDIMLPELGPYTLDFTSS-------GRYMAAAGCKGYPYFYN--RDGTELHCSKEHG-----EVL   89 (378)
Q Consensus        24 ~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~-------g~~l~~~~~dg~i~iwd--~~~~~~~~~~~~~-----~~~   89 (378)
                      ...|+-.|+..|+.+.....|.... -..+.|+       ....++|-.+..+..||  +.+..+..-..+.     ..+
T Consensus       503 ~~~ly~mDLe~GKVV~eW~~~~~~~-v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs  581 (794)
T PF08553_consen  503 PNKLYKMDLERGKVVEEWKVHDDIP-VVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFS  581 (794)
T ss_pred             CCceEEEecCCCcEEEEeecCCCcc-eeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCce
Confidence            5778889999999999999886541 3344453       23457777888999999  4454332212221     125


Q ss_pred             EEEE----EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcC
Q 046394           90 KLQF----LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHS  142 (378)
Q Consensus        90 ~l~~----~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  142 (378)
                      |++-    +||.|+.+|.|++||--..+....+++-..+|.+|..+.||.+|++.+.
T Consensus       582 ~~aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~  638 (794)
T PF08553_consen  582 CFATTEDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCK  638 (794)
T ss_pred             EEEecCCceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeec
Confidence            5555    9999999999999994333334455666789999999999998776543

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.03  E-value=0.00073  Score=66.78  Aligned_cols=162  Identities=14%  Similarity=0.208  Sum_probs=100.9

Q ss_pred             eeEEEE-----EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe-----------------
Q 046394           88 VLKLQF-----LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT-----------------  145 (378)
Q Consensus        88 ~~~l~~-----~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~-----------------  145 (378)
                      +.++.|     .++.+..+|.|.+-|..+... .....-.+.|.+++||||+..++..+..++                 
T Consensus        71 i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~-eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~  149 (1265)
T KOG1920|consen   71 IVSVQFLADTNSICVITALGDIILVDPETLEL-EIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLD  149 (1265)
T ss_pred             eEEEEEecccceEEEEecCCcEEEEcccccce-eeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccccc
Confidence            467777     566666778888888776543 222334578999999999999988888766                 


Q ss_pred             --------------------eeec---------------------CCCEEEEEEecCCCEEEEEE----CC-CeEEEEEc
Q 046394          146 --------------------MLCH---------------------QGPVSALAFHPNGHLMATSG----KD-CKIKIWDL  179 (378)
Q Consensus       146 --------------------~~~h---------------------~~~v~~~~~sp~g~~l~t~~----~d-~~i~iwd~  179 (378)
                                          +.+.                     .+.=++|.|--||.++|+..    .+ ..|+|||.
T Consensus       150 ~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~dr  229 (1265)
T KOG1920|consen  150 ADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDR  229 (1265)
T ss_pred             cccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEecc
Confidence                                1110                     11124589999999998833    23 78999997


Q ss_pred             CCceeeeee---cCCceEEEEecCCCcccc--C-CCCCc-eEE------------EeeccCCcceeeeEEcCCCCeEEE-
Q 046394          180 RKYEVLQTL---PGHAKTLDFSRKDSGDFS--G-SHNYN-RYM------------GYSMVKGYQIGKVSFRPYEDVLGI-  239 (378)
Q Consensus       180 ~~~~~~~~~---~~~i~~~~~sp~g~~~~~--~-~~~~~-~~~------------~~~~~~~~~v~~~~~sp~g~~l~~-  239 (378)
                      . |.+-.+-   .+--.+++|-|.|.....  . ..... .++            .+.. ....|..++|+.++..||+ 
T Consensus       230 E-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~-de~~ve~L~Wns~sdiLAv~  307 (1265)
T KOG1920|consen  230 E-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPL-DEKEVEELAWNSNSDILAVV  307 (1265)
T ss_pred             c-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcc-cccchheeeecCCCCceeee
Confidence            6 4432222   244577888887764111  0 00111 111            1111 2234899999999999998 


Q ss_pred             --ecCCCeEEEEEcC
Q 046394          240 --GHSMGVSGILIPG  252 (378)
Q Consensus       240 --~~~~g~~~~~~~~  252 (378)
                        ......+.+|.++
T Consensus       308 ~~~~e~~~v~lwt~~  322 (1265)
T KOG1920|consen  308 TSNLENSLVQLWTTG  322 (1265)
T ss_pred             ecccccceEEEEEec
Confidence              4445545655544

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.03  E-value=0.0019  Score=59.27  Aligned_cols=171  Identities=11%  Similarity=0.034  Sum_probs=102.2

Q ss_pred             ceeeEEEeccceeeeeecccceeeEEeecCCCCce-EEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeeccCCC-----
Q 046394           15 VEKTWRIKQEAIAREVDILSSRNQYDIMLPELGPY-TLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKEHGE-----   87 (378)
Q Consensus        15 ~~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~-~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~-----   87 (378)
                      .++.|....++.+..+|..+++.++...... .+. +....  +..++++..+|.|..+| .+|+.+..+.....     
T Consensus       120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~ssP~v~--~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~  196 (394)
T PRK11138        120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAG-EALSRPVVS--DGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLR  196 (394)
T ss_pred             CCEEEEEcCCCEEEEEECCCCCCcccccCCC-ceecCCEEE--CCEEEEECCCCEEEEEEccCCCEeeeecCCCCccccc
Confidence            3566666778899999999999988877653 222 11222  34677788899999999 57888777653211     


Q ss_pred             --eeEEEE--EEEEEeCCCeEEEEEcCCCcEEEEEecCCC-------CeeEEEEcC--CCCEEEEEcCCCe---eeecCC
Q 046394           88 --VLKLQF--LLASINKLGQLRYQNVTMGEIVGNFWTGLG-------RTDVIRVNP--FNGVVSLGHSGGT---MLCHQG  151 (378)
Q Consensus        88 --~~~l~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-------~v~~~~~s~--~~~~l~~~~~d~~---~~~h~~  151 (378)
                        ..-+..  .++.++.++.+..+|..+|+.+........       ....+..+|  .+..+++++.++.   +....+
T Consensus       197 ~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG  276 (394)
T PRK11138        197 GESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSG  276 (394)
T ss_pred             CCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCC
Confidence              111112  566677889999999999987665532110       011111122  2344555555554   111111


Q ss_pred             CE-EEE------EEecCCCEEEEEECCCeEEEEEcCCceeeeee
Q 046394          152 PV-SAL------AFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL  188 (378)
Q Consensus       152 ~v-~~~------~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~  188 (378)
                      .+ ...      .....+..++.++.+|.|..+|..+|+.+...
T Consensus       277 ~~~W~~~~~~~~~~~~~~~~vy~~~~~g~l~ald~~tG~~~W~~  320 (394)
T PRK11138        277 QIVWKREYGSVNDFAVDGGRIYLVDQNDRVYALDTRGGVELWSQ  320 (394)
T ss_pred             CEEEeecCCCccCcEEECCEEEEEcCCCeEEEEECCCCcEEEcc
Confidence            11 000      01124567777888999999999998876543

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=98.02  E-value=0.0019  Score=59.20  Aligned_cols=43  Identities=14%  Similarity=0.206  Sum_probs=34.4

Q ss_pred             cEEEEeCCCCeEEeeccCCC-eeEEEE----EEEEEeCCCeEEEEEcC
Q 046394           68 YPYFYNRDGTELHCSKEHGE-VLKLQF----LLASINKLGQLRYQNVT  110 (378)
Q Consensus        68 ~i~iwd~~~~~~~~~~~~~~-~~~l~~----~l~s~~~d~~i~iwd~~  110 (378)
                      .|.||+..|..+..+.-..+ +.++.|    .|+....||.++++|+.
T Consensus        62 ~I~iys~sG~ll~~i~w~~~~iv~~~wt~~e~LvvV~~dG~v~vy~~~  109 (410)
T PF04841_consen   62 SIQIYSSSGKLLSSIPWDSGRIVGMGWTDDEELVVVQSDGTVRVYDLF  109 (410)
T ss_pred             EEEEECCCCCEeEEEEECCCCEEEEEECCCCeEEEEEcCCEEEEEeCC
Confidence            49999999998877654434 488889    77777799999999984

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.02  E-value=0.00028  Score=64.53  Aligned_cols=75  Identities=13%  Similarity=0.137  Sum_probs=54.9

Q ss_pred             ecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeeecCCceEEEEecCCCccccCCCCCceEEEeeccCCcceee
Q 046394          148 CHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHAKTLDFSRKDSGDFSGSHNYNRYMGYSMVKGYQIGK  227 (378)
Q Consensus       148 ~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~~~~i~~~~~sp~g~~~~~~~~~~~~~~~~~~~~~~~v~~  227 (378)
                      .....|.+++++|+...|+.|+.||+|.+||...+.....                              .  ..-.++.
T Consensus       257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~------------------------------k--a~~~P~~  304 (545)
T PF11768_consen  257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA------------------------------K--AEFIPTL  304 (545)
T ss_pred             ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee------------------------------e--ecccceE
Confidence            4677899999999999999999999999999876431110                              0  1234567


Q ss_pred             eEEcCCCCeEEEecCCCeEEEEEcCCC
Q 046394          228 VSFRPYEDVLGIGHSMGVSGILIPGSG  254 (378)
Q Consensus       228 ~~~sp~g~~l~~~~~~g~~~~~~~~s~  254 (378)
                      ++|+|+|.++++|+..|.+.+|..+-+
T Consensus       305 iaWHp~gai~~V~s~qGelQ~FD~ALs  331 (545)
T PF11768_consen  305 IAWHPDGAIFVVGSEQGELQCFDMALS  331 (545)
T ss_pred             EEEcCCCcEEEEEcCCceEEEEEeecC
Confidence            778888877777777777776654433

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.99  E-value=0.00081  Score=62.70  Aligned_cols=100  Identities=16%  Similarity=0.117  Sum_probs=72.8

Q ss_pred             CCceEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEeecc--CCCe-eEEEE-----EEEEEeCCCeEEEEEcCCCcEE--
Q 046394           46 LGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTELHCSKE--HGEV-LKLQF-----LLASINKLGQLRYQNVTMGEIV--  115 (378)
Q Consensus        46 ~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~-~~l~~-----~l~s~~~d~~i~iwd~~~~~~~--  115 (378)
                      ..|.=-+++..+.+|+.|++-|.+++|+..+.....+..  ..+. .....     ++|.|+..|.|.++.+..+.+.  
T Consensus        34 ~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~  113 (726)
T KOG3621|consen   34 ARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDL  113 (726)
T ss_pred             ceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcc
Confidence            344444566778999999999999999976666555544  2333 22222     7888888999999988764431  


Q ss_pred             ---EEE-ecCCCCeeEEEEcCCCCEEEEEcCCCe
Q 046394          116 ---GNF-WTGLGRTDVIRVNPFNGVVSLGHSGGT  145 (378)
Q Consensus       116 ---~~~-~~~~~~v~~~~~s~~~~~l~~~~~d~~  145 (378)
                         ..+ ..|...|++++|++++..+++|...|.
T Consensus       114 ~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gk  147 (726)
T KOG3621|consen  114 DYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGK  147 (726)
T ss_pred             eeeccccccCCceEEEEEecccccEEeecCCCce
Confidence               111 125788999999999999999999887

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.96  E-value=0.0016  Score=61.19  Aligned_cols=148  Identities=12%  Similarity=0.073  Sum_probs=96.9

Q ss_pred             cceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEeeccCCCeeEEEE----------
Q 046394           24 EAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTELHCSKEHGEVLKLQF----------   93 (378)
Q Consensus        24 ~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~l~~----------   93 (378)
                      .+.+.++|..+.+..+++... +....++++|+|.++++.+.+..      .+..+..+........+.|          
T Consensus       214 ~~~vSvID~etmeV~~qV~Vd-gnpd~v~~spdGk~afvTsyNsE------~G~tl~em~a~e~d~~vvfni~~iea~vk  286 (635)
T PRK02888        214 RSLFTAVDAETMEVAWQVMVD-GNLDNVDTDYDGKYAFSTCYNSE------EGVTLAEMMAAERDWVVVFNIARIEEAVK  286 (635)
T ss_pred             eEEEEEEECccceEEEEEEeC-CCcccceECCCCCEEEEeccCcc------cCcceeeeccccCceEEEEchHHHHHhhh
Confidence            467788899998888888775 46678899999999988864321      1112222211111122222          


Q ss_pred             ---EEEEEeCCCeEEEEEcCC----C-cEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe---------ee---------
Q 046394           94 ---LLASINKLGQLRYQNVTM----G-EIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT---------ML---------  147 (378)
Q Consensus        94 ---~l~s~~~d~~i~iwd~~~----~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~---------~~---------  147 (378)
                         +...  .++.|.+.|..+    + ..+..+. -......+.++|||+++++++....         +.         
T Consensus       287 dGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~  363 (635)
T PRK02888        287 AGKFKTI--GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKP  363 (635)
T ss_pred             CCCEEEE--CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCc
Confidence               1111  357899999988    3 4455554 4567889999999999888776443         00         


Q ss_pred             -----e---cCCCEEEEEEecCCCEEEEEECCCeEEEEEcCC
Q 046394          148 -----C---HQGPVSALAFHPNGHLMATSGKDCKIKIWDLRK  181 (378)
Q Consensus       148 -----~---h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~  181 (378)
                           +   -.-.....+|.++|+.+.|.-.|..|..||+..
T Consensus       364 ~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        364 RDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             cceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence                 0   011224568899998888888999999999865

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=97.95  E-value=7.9e-05  Score=60.93  Aligned_cols=87  Identities=9%  Similarity=-0.000  Sum_probs=61.0

Q ss_pred             ceeeeeecccceeeEEeecCCCCceEEEEcCCC-CEEEEEeCCCcEEEEeCC--CCeEEeeccCCCe-eEEEE------E
Q 046394           25 AIAREVDILSSRNQYDIMLPELGPYTLDFTSSG-RYMAAAGCKGYPYFYNRD--GTELHCSKEHGEV-LKLQF------L   94 (378)
Q Consensus        25 ~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g-~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~-~~l~~------~   94 (378)
                      +..++|++........-.....+|.+++-+|.. +.+++|+.||.+-+||..  ..+...+..|... +.+.|      .
T Consensus       159 d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~  238 (319)
T KOG4714|consen  159 DNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEH  238 (319)
T ss_pred             cceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchh
Confidence            345555554433322222223459999999966 466778889999999943  2344557788876 88888      8


Q ss_pred             EEEEeCCCeEEEEEcCC
Q 046394           95 LASINKLGQLRYQNVTM  111 (378)
Q Consensus        95 l~s~~~d~~i~iwd~~~  111 (378)
                      |++++.||.+..||..+
T Consensus       239 Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  239 LFTCSEDGSLWHWDAST  255 (319)
T ss_pred             eeEecCCCcEEEEcCCC
Confidence            99999999999999864

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.95  E-value=0.00028  Score=64.55  Aligned_cols=153  Identities=14%  Similarity=0.115  Sum_probs=88.4

Q ss_pred             eeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEE---eCC-CcEEEEeCCCCe---EEeeccCCCeeEEEE------
Q 046394           27 AREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAA---GCK-GYPYFYNRDGTE---LHCSKEHGEVLKLQF------   93 (378)
Q Consensus        27 i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~---~~d-g~i~iwd~~~~~---~~~~~~~~~~~~l~~------   93 (378)
                      +.+-|.. +.....+......+..-+|+|++..++..   ... ..++++++....   +..+.++..  ...|      
T Consensus       175 l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~--~P~fspDG~~  251 (425)
T COG0823         175 LALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNG--APAFSPDGSK  251 (425)
T ss_pred             EEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccC--CccCCCCCCE
Confidence            3344433 55555565555677788999999865543   223 458899954322   233333333  3333      


Q ss_pred             EEEEEeCCCe--EEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe----------------eeecCCCEEE
Q 046394           94 LLASINKLGQ--LRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT----------------MLCHQGPVSA  155 (378)
Q Consensus        94 ~l~s~~~d~~--i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~----------------~~~h~~~v~~  155 (378)
                      ++++...||.  |.++|+..++. ..+....+.-..-.|+|||+.++..++.+.                +....+.-..
T Consensus       252 l~f~~~rdg~~~iy~~dl~~~~~-~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~~  330 (425)
T COG0823         252 LAFSSSRDGSPDIYLMDLDGKNL-PRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNSN  330 (425)
T ss_pred             EEEEECCCCCccEEEEcCCCCcc-eecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCcC
Confidence            5556666665  66667766663 335544455557789999987776655443                1111111125


Q ss_pred             EEEecCCCEEEEEECC-Ce--EEEEEcCCce
Q 046394          156 LAFHPNGHLMATSGKD-CK--IKIWDLRKYE  183 (378)
Q Consensus       156 ~~~sp~g~~l~t~~~d-~~--i~iwd~~~~~  183 (378)
                      -.|+|||.+|+..+.. |.  |.+.|+.++.
T Consensus       331 p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~  361 (425)
T COG0823         331 PVWSPDGDKIVFESSSGGQWDIDKNDLASGG  361 (425)
T ss_pred             ccCCCCCCEEEEEeccCCceeeEEeccCCCC
Confidence            5688889888877643 33  5566665543

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=97.94  E-value=0.00012  Score=64.33  Aligned_cols=197  Identities=14%  Similarity=0.153  Sum_probs=120.7

Q ss_pred             CCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCC----CeEEeeccCCCe-eEEEE-----EEEEEeC-CCeEEEEEcCCC
Q 046394           44 PELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDG----TELHCSKEHGEV-LKLQF-----LLASINK-LGQLRYQNVTMG  112 (378)
Q Consensus        44 ~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~-~~l~~-----~l~s~~~-d~~i~iwd~~~~  112 (378)
                      |...|+.+..+ -..++.+++.||.++.|....    +.+..+..|.++ .+++.     ++.|.+. |..++++|+.+.
T Consensus         8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~   86 (558)
T KOG0882|consen    8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF   86 (558)
T ss_pred             ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence            55556555433 356999999999999999544    223446667664 33333     7788777 999999998875


Q ss_pred             cEEEEEec------------CCCCeeEEEEcC--CCCEEEE-EcCCCe-----eeecCCCEEEEEEecCCCEEEEEECCC
Q 046394          113 EIVGNFWT------------GLGRTDVIRVNP--FNGVVSL-GHSGGT-----MLCHQGPVSALAFHPNGHLMATSGKDC  172 (378)
Q Consensus       113 ~~~~~~~~------------~~~~v~~~~~s~--~~~~l~~-~~~d~~-----~~~h~~~v~~~~~sp~g~~l~t~~~d~  172 (378)
                      ..+.-+..            ....+..++.+.  ++..+++ +..+..     -.-|..+|..+.++|-+..+++....|
T Consensus        87 DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~g  166 (558)
T KOG0882|consen   87 DMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISG  166 (558)
T ss_pred             chhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccc
Confidence            54322211            112233333332  1221111 112221     345889999999999999999999999


Q ss_pred             eEEEEEcCCceeeeeecCCceEEEEecCCCccccCCCCCceEEEeeccCCcceeeeEEcCCCCeEEEecCCCeEEEEEcC
Q 046394          173 KIKIWDLRKYEVLQTLPGHAKTLDFSRKDSGDFSGSHNYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILIPG  252 (378)
Q Consensus       173 ~i~iwd~~~~~~~~~~~~~i~~~~~sp~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~~~  252 (378)
                      .|.-|....  .   +.-+=+.+.|.+....+++         .+.- ......++.|+|+|..+++-+.|..+.++..-
T Consensus       167 mVEyWs~e~--~---~qfPr~~l~~~~K~eTdLy---------~f~K-~Kt~pts~Efsp~g~qistl~~DrkVR~F~~K  231 (558)
T KOG0882|consen  167 MVEYWSAEG--P---FQFPRTNLNFELKHETDLY---------GFPK-AKTEPTSFEFSPDGAQISTLNPDRKVRGFVFK  231 (558)
T ss_pred             eeEeecCCC--c---ccCccccccccccccchhh---------cccc-cccCccceEEccccCcccccCcccEEEEEEec
Confidence            999997652  0   1011112233322222222         1211 23457789999999999999999988888776


Q ss_pred             CCCc
Q 046394          253 SGEP  256 (378)
Q Consensus       253 s~d~  256 (378)
                      +++-
T Consensus       232 tGkl  235 (558)
T KOG0882|consen  232 TGKL  235 (558)
T ss_pred             cchh
Confidence            6654

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.94  E-value=0.0012  Score=60.62  Aligned_cols=126  Identities=16%  Similarity=0.175  Sum_probs=59.8

Q ss_pred             eecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEeeccCCCeeEEEE----EEEEEeCCCeEEEEEcCCCcEEE
Q 046394           41 IMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTELHCSKEHGEVLKLQF----LLASINKLGQLRYQNVTMGEIVG  116 (378)
Q Consensus        41 l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~l~~----~l~s~~~d~~i~iwd~~~~~~~~  116 (378)
                      +......+..+.++|+|++++++ .+|...|+...+..-...   .......|    .+|+-..+++|.|+.--......
T Consensus        28 lg~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~~---G~g~~~vw~~~n~yAv~~~~~~I~I~kn~~~~~~k  103 (443)
T PF04053_consen   28 LGSCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKAF---GSGLSFVWSSRNRYAVLESSSTIKIYKNFKNEVVK  103 (443)
T ss_dssp             EEE-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEEE---EE-SEEEE-TSSEEEEE-TTS-EEEEETTEE-TT-
T ss_pred             CCCCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCccccc---CceeEEEEecCccEEEEECCCeEEEEEcCccccce
Confidence            33344568899999999999985 577888887333222221   11144555    55665556677775211111111


Q ss_pred             EEecCCCCeeEEEEcCCCCEEEEEcCCCeeeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee-cCCceEE
Q 046394          117 NFWTGLGRTDVIRVNPFNGVVSLGHSGGTMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL-PGHAKTL  195 (378)
Q Consensus       117 ~~~~~~~~v~~~~~s~~~~~l~~~~~d~~~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~-~~~i~~~  195 (378)
                      .+..                             ...+..|-.   |.+|+..+.+ .|.+||+.+++.++.+ ..++..+
T Consensus       104 ~i~~-----------------------------~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~~vk~V  150 (443)
T PF04053_consen  104 SIKL-----------------------------PFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVSAVKYV  150 (443)
T ss_dssp             ---------------------------------SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS-E-EEE
T ss_pred             EEcC-----------------------------CcccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecCCCcEE
Confidence            2211                             111222211   5555555433 6777777777777777 3346777


Q ss_pred             EEecCCCc
Q 046394          196 DFSRKDSG  203 (378)
Q Consensus       196 ~~sp~g~~  203 (378)
                      .||++|.+
T Consensus       151 ~Ws~~g~~  158 (443)
T PF04053_consen  151 IWSDDGEL  158 (443)
T ss_dssp             EE-TTSSE
T ss_pred             EEECCCCE
Confidence            77777664

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=97.86  E-value=0.011  Score=55.87  Aligned_cols=172  Identities=12%  Similarity=0.110  Sum_probs=105.2

Q ss_pred             eeeEEEeccceeeeeecccceeeEEeecCCCC------ce--EEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeeccCC
Q 046394           16 EKTWRIKQEAIAREVDILSSRNQYDIMLPELG------PY--TLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKEHG   86 (378)
Q Consensus        16 ~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~------v~--~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~   86 (378)
                      ++.|....++.+..+|..+++.+.........      +.  .++.. ++..++.++.+|.|+-+| .+|+.+..+....
T Consensus        62 g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~  140 (488)
T cd00216          62 GDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNND  140 (488)
T ss_pred             CEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCCC
Confidence            45666667899999999999998887654321      11  11111 225788888899999999 5788887765443


Q ss_pred             C------e-eEEEE---EEEEEe---------CCCeEEEEEcCCCcEEEEEecCCCC--------------------e-e
Q 046394           87 E------V-LKLQF---LLASIN---------KLGQLRYQNVTMGEIVGNFWTGLGR--------------------T-D  126 (378)
Q Consensus        87 ~------~-~~l~~---~l~s~~---------~d~~i~iwd~~~~~~~~~~~~~~~~--------------------v-~  126 (378)
                      .      + .+..+   .++.++         .++.|..+|..+|+.+..+......                    + .
T Consensus       141 ~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~  220 (488)
T cd00216         141 QVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWA  220 (488)
T ss_pred             CcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccC
Confidence            2      2 22222   444443         4688999999999988877542110                    1 1


Q ss_pred             EEEEcCCCCEEEEEcCCC------------------e--------------e--eecCC----CEEEEEEe----cCCC-
Q 046394          127 VIRVNPFNGVVSLGHSGG------------------T--------------M--LCHQG----PVSALAFH----PNGH-  163 (378)
Q Consensus       127 ~~~~s~~~~~l~~~~~d~------------------~--------------~--~~h~~----~v~~~~~s----p~g~-  163 (378)
                      ..++.+.+..+++++.++                  .              +  ..|..    ......+.    -+|. 
T Consensus       221 ~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~  300 (488)
T cd00216         221 SPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKP  300 (488)
T ss_pred             CeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCe
Confidence            345555666777776554                  1              0  00100    00000111    1232 


Q ss_pred             --EEEEEECCCeEEEEEcCCceeeeee
Q 046394          164 --LMATSGKDCKIKIWDLRKYEVLQTL  188 (378)
Q Consensus       164 --~l~t~~~d~~i~iwd~~~~~~~~~~  188 (378)
                        .++.++.+|.+...|..+|+.+...
T Consensus       301 ~~~V~~g~~~G~l~ald~~tG~~~W~~  327 (488)
T cd00216         301 VPAIVHAPKNGFFYVLDRTTGKLISAR  327 (488)
T ss_pred             eEEEEEECCCceEEEEECCCCcEeeEe
Confidence              5777888999999999999988765

The alignment model contains an 8-bladed beta-propeller.

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.85  E-value=0.00066  Score=62.22  Aligned_cols=70  Identities=9%  Similarity=0.025  Sum_probs=55.8

Q ss_pred             CCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEeeccCCCeeEEEE-----EEEEEeCCCeEEEEEcCCCc
Q 046394           44 PELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTELHCSKEHGEVLKLQF-----LLASINKLGQLRYQNVTMGE  113 (378)
Q Consensus        44 ~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~l~~-----~l~s~~~d~~i~iwd~~~~~  113 (378)
                      ....|.|++++|+...|+.|+.||.|.+||.........+..--++.++|     ++++|+..|.+.+||+.-.-
T Consensus       258 L~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp  332 (545)
T PF11768_consen  258 LPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP  332 (545)
T ss_pred             cCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence            34689999999999999999999999999965444333333333488999     89999999999999986543

>smart00320 WD40 WD40 repeats

Probab=97.83  E-value=6.7e-05  Score=42.53  Aligned_cols=38  Identities=16%  Similarity=0.212  Sum_probs=33.5

Q ss_pred             eeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe
Q 046394           36 RNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN   73 (378)
Q Consensus        36 ~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd   73 (378)
                      +....+..|...|.++.|+|++.++++++.|+.+++|+
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            44566778888999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=97.82  E-value=9.7e-05  Score=62.85  Aligned_cols=104  Identities=11%  Similarity=0.030  Sum_probs=77.1

Q ss_pred             eEEEeccceeeeeecccc----eeeEEeecCCCCceEEEEcC-CCCEEEEEeCCCcEEEEeC-CC---CeEEeeccCCCe
Q 046394           18 TWRIKQEAIAREVDILSS----RNQYDIMLPELGPYTLDFTS-SGRYMAAAGCKGYPYFYNR-DG---TELHCSKEHGEV   88 (378)
Q Consensus        18 ~~~~~~~~~i~~~d~~~~----~~~~~l~~~~~~v~~~~~sp-~g~~l~~~~~dg~i~iwd~-~~---~~~~~~~~~~~~   88 (378)
                      .+...-.+.|-++|+...    ......-.|+..|+++..-. ++.+|++.+.+|.|.+||. ..   .-+..+.+|...
T Consensus       267 v~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~  346 (425)
T KOG2695|consen  267 VFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNL  346 (425)
T ss_pred             eEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeeccccc
Confidence            344455677788888766    22333445778898887655 6788999999999999993 23   337888888764


Q ss_pred             -eEEEE-------EEEEEeCCCeEEEEEcCCCcEEEEEecC
Q 046394           89 -LKLQF-------LLASINKLGQLRYQNVTMGEIVGNFWTG  121 (378)
Q Consensus        89 -~~l~~-------~l~s~~~d~~i~iwd~~~~~~~~~~~~~  121 (378)
                       .-+-+       .++++|.|...+||.+..|+.+.+++..
T Consensus       347 ~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~  387 (425)
T KOG2695|consen  347 SAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFP  387 (425)
T ss_pred             ccccccccccccceEEEccCeeEEEEEecccCceeeccCCC
Confidence             33333       7888999999999999999999888654

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.79  E-value=0.0003  Score=63.42  Aligned_cols=140  Identities=10%  Similarity=0.087  Sum_probs=90.1

Q ss_pred             CCCCCCCeeecCCceeeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCC-------EEEEEeCCCcEEEEe-
Q 046394            2 LMPSEGGYLEAEGVEKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGR-------YMAAAGCKGYPYFYN-   73 (378)
Q Consensus         2 ~~~~~~~~l~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~-------~l~~~~~dg~i~iwd-   73 (378)
                      |+-.+..+|..++..+       ..++-.|++.|+.+-..+.|.. |.-+.+.|+..       .-+.|-.+..|.-|| 
T Consensus       340 L~~~dsnlil~~~~~~-------~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDp  411 (644)
T KOG2395|consen  340 LHRADSNLILMDGGEQ-------DKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDP  411 (644)
T ss_pred             hhccccceEeeCCCCc-------CcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecc
Confidence            4555566666655443       5677789999999999998855 88888888764       235677788999999 


Q ss_pred             -CCCC-eEEeeccCCCe-----eEEEE----EEEEEeCCCeEEEEEcCCCcE-EEEEecCCCCeeEEEEcCCCCEEEEEc
Q 046394           74 -RDGT-ELHCSKEHGEV-----LKLQF----LLASINKLGQLRYQNVTMGEI-VGNFWTGLGRTDVIRVNPFNGVVSLGH  141 (378)
Q Consensus        74 -~~~~-~~~~~~~~~~~-----~~l~~----~l~s~~~d~~i~iwd~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~  141 (378)
                       +.+. .+....+|.-.     .|.+-    ++|.||.+|.|++||- .+.. -..++                      
T Consensus       412 Rv~~~~kl~~~q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AKTAlP----------------------  468 (644)
T KOG2395|consen  412 RVQGKNKLAVVQSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDR-IGRRAKTALP----------------------  468 (644)
T ss_pred             cccCcceeeeeeccccccccccceeeecCCceEEEeecCCcEEeehh-hhhhhhhccc----------------------
Confidence             3444 33344444322     33333    9999999999999996 4332 33343                      


Q ss_pred             CCCeeeecCCCEEEEEEecCCCEEEEEECCCeEEEEEc
Q 046394          142 SGGTMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDL  179 (378)
Q Consensus       142 ~d~~~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~  179 (378)
                            +...+|..|..+.+|++|+..+ +..+.+.|+
T Consensus       469 ------gLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t  499 (644)
T KOG2395|consen  469 ------GLGDAIKHVDVTADGKWILATC-KTYLLLIDT  499 (644)
T ss_pred             ------ccCCceeeEEeeccCcEEEEec-ccEEEEEEE
Confidence                  3445666666666666654443 444544444

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=97.75  E-value=0.0007  Score=56.96  Aligned_cols=128  Identities=16%  Similarity=0.227  Sum_probs=79.7

Q ss_pred             cCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCC--CCe--EEeeccCC-----Ce-eEEEE------EEEEEeCCCeEEE
Q 046394           43 LPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRD--GTE--LHCSKEHG-----EV-LKLQF------LLASINKLGQLRY  106 (378)
Q Consensus        43 ~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~--~~~--~~~~~~~~-----~~-~~l~~------~l~s~~~d~~i~i  106 (378)
                      .|...+.++.|..|...++++ .|=.|.+|+++  ...  +..++.|.     .+ ++..|      .+.-++..|.|++
T Consensus       170 aH~yhiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl  248 (460)
T COG5170         170 AHPYHINSISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKL  248 (460)
T ss_pred             cceeEeeeeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEe
Confidence            466668899999988888776 46689999942  222  23334443     23 66666      5666677899999


Q ss_pred             EEcCCCcE-E---EEEecCCCCeeEEEEcCCCCEEEEEcCCCeeeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCc
Q 046394          107 QNVTMGEI-V---GNFWTGLGRTDVIRVNPFNGVVSLGHSGGTMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKY  182 (378)
Q Consensus       107 wd~~~~~~-~---~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~  182 (378)
                      -|+++... .   ..+.....++        ..-+        +.+-...|..+.|+|+|+++++-+. -+|+|||++..
T Consensus       249 ~DlRq~alcdn~~klfe~~~D~v--------~~~f--------f~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~  311 (460)
T COG5170         249 NDLRQSALCDNSKKLFELTIDGV--------DVDF--------FEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMA  311 (460)
T ss_pred             hhhhhhhhccCchhhhhhccCcc--------cchh--------HHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccc
Confidence            99975321 1   1111111111        0000        2234567888999999999988764 47999999873


Q ss_pred             -eeeeee
Q 046394          183 -EVLQTL  188 (378)
Q Consensus       183 -~~~~~~  188 (378)
                       .++.++
T Consensus       312 k~pikTi  318 (460)
T COG5170         312 KNPIKTI  318 (460)
T ss_pred             cCCceee
Confidence             345554

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.71  E-value=0.0019  Score=46.27  Aligned_cols=61  Identities=13%  Similarity=-0.014  Sum_probs=48.4

Q ss_pred             ceEEEEcC---CC-CEEEEEeCCCcEEEEeCCCCeEEeeccCCCeeEEEE----EEEEEeCCCeEEEEEc
Q 046394           48 PYTLDFTS---SG-RYMAAAGCKGYPYFYNRDGTELHCSKEHGEVLKLQF----LLASINKLGQLRYQNV  109 (378)
Q Consensus        48 v~~~~~sp---~g-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~l~~----~l~s~~~d~~i~iwd~  109 (378)
                      |++|+++.   || +.|++|+.|..|+||+-+ ..+..+..+..++++..    .|+.+..+|+|-+|+-
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~-e~~~Ei~e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~   70 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD-EIVAEITETDKVTSLCSLGGGRFAYALANGTVGVYDR   70 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCC-cEEEEEecccceEEEEEcCCCEEEEEecCCEEEEEeC
Confidence            56666654   33 589999999999999854 56777777777766666    8999999999999985

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.70  E-value=0.0015  Score=62.27  Aligned_cols=54  Identities=7%  Similarity=0.026  Sum_probs=46.2

Q ss_pred             EeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeC
Q 046394           21 IKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNR   74 (378)
Q Consensus        21 ~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~   74 (378)
                      .|.-+.+.+|...+.+.......|..+|..+.|||+|..++++..-|.|.+|..
T Consensus        77 gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~  130 (1416)
T KOG3617|consen   77 GWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRY  130 (1416)
T ss_pred             ccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEe
Confidence            455678889988777766556678999999999999999999999999999984

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.64  E-value=0.0022  Score=58.81  Aligned_cols=154  Identities=14%  Similarity=0.148  Sum_probs=88.8

Q ss_pred             CeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEE-EEcCCCe---------------eeecCCCEEEEEEecCCCEE
Q 046394          102 GQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVS-LGHSGGT---------------MLCHQGPVSALAFHPNGHLM  165 (378)
Q Consensus       102 ~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~d~~---------------~~~h~~~v~~~~~sp~g~~l  165 (378)
                      ..+.++|+.+++...... ..+.-...+|+|||+.|+ +...+|.               +....+.-+.-.|+|||+++
T Consensus       218 ~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~i  296 (425)
T COG0823         218 PRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKI  296 (425)
T ss_pred             ceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCcceecccCCccccCccCCCCCCEE
Confidence            569999999887544443 335556689999997655 4455555               11122222355799999998


Q ss_pred             EEEEC-CC--eEEEEEcCCceeee-ee-cCCceEEEEecCCCccccCCCCCce--EEEeec---------cCCcceeeeE
Q 046394          166 ATSGK-DC--KIKIWDLRKYEVLQ-TL-PGHAKTLDFSRKDSGDFSGSHNYNR--YMGYSM---------VKGYQIGKVS  229 (378)
Q Consensus       166 ~t~~~-d~--~i~iwd~~~~~~~~-~~-~~~i~~~~~sp~g~~~~~~~~~~~~--~~~~~~---------~~~~~v~~~~  229 (378)
                      +-.+. .|  .|.++|+....... +. ...-....|||||.+.+........  +..+..         ........-+
T Consensus       297 vf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps  376 (425)
T COG0823         297 VFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTSTYLNESPS  376 (425)
T ss_pred             EEEeCCCCCcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEccccccCCCCC
Confidence            87664 34  56677776655522 22 2333488999999986655422111  111111         0122334567


Q ss_pred             EcCCCCeEEEecCCCeEEEEEcCCCCc
Q 046394          230 FRPYEDVLGIGHSMGVSGILIPGSGEP  256 (378)
Q Consensus       230 ~sp~g~~l~~~~~~g~~~~~~~~s~d~  256 (378)
                      |.|+|..+...+..+.-..+...+.++
T Consensus       377 ~~~ng~~i~~~s~~~~~~~l~~~s~~g  403 (425)
T COG0823         377 WAPNGRMIMFSSGQGGGSVLSLVSLDG  403 (425)
T ss_pred             cCCCCceEEEeccCCCCceEEEeeccc
Confidence            888888777665555333333333443

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.64  E-value=0.036  Score=48.44  Aligned_cols=101  Identities=9%  Similarity=0.058  Sum_probs=65.6

Q ss_pred             ceeeEEEeccceeeeeecccceeeEEeecCCC-------CceEEEEcCCCCEEEEEeC--CCcEEEEeCCCCeEEeeccC
Q 046394           15 VEKTWRIKQEAIAREVDILSSRNQYDIMLPEL-------GPYTLDFTSSGRYMAAAGC--KGYPYFYNRDGTELHCSKEH   85 (378)
Q Consensus        15 ~~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~-------~v~~~~~sp~g~~l~~~~~--dg~i~iwd~~~~~~~~~~~~   85 (378)
                      .++..+..-...|.+||..|......+.....       ....+++|.||+++++...  ...|.|.|+....+..--..
T Consensus        57 ~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~  136 (342)
T PF06433_consen   57 YSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDT  136 (342)
T ss_dssp             EEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEG
T ss_pred             EeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecC
Confidence            33444455568899999999988887665432       1236788899998877644  45788899665554332222


Q ss_pred             CCeeEEEE-----EEEEEeCCCeEEEEEcC-CCcEEE
Q 046394           86 GEVLKLQF-----LLASINKLGQLRYQNVT-MGEIVG  116 (378)
Q Consensus        86 ~~~~~l~~-----~l~s~~~d~~i~iwd~~-~~~~~~  116 (378)
                      .++ .+.|     .|.+.+.||.+.-..+. .|+...
T Consensus       137 PGC-~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~  172 (342)
T PF06433_consen  137 PGC-WLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQ  172 (342)
T ss_dssp             TSE-EEEEEEETTEEEEEETTSCEEEEEETSTSSEEE
T ss_pred             CCE-EEEEecCCCceEEEecCCceEEEEECCCCCEeE
Confidence            333 1222     67788889999988887 566543

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.63  E-value=0.028  Score=50.00  Aligned_cols=153  Identities=12%  Similarity=0.069  Sum_probs=85.1

Q ss_pred             eeeeeecccceeeEEeecCC-CCceEEEE---cCC----CCEEEEEeC----------CCcEEEEeCCC-----CeEEee
Q 046394           26 IAREVDILSSRNQYDIMLPE-LGPYTLDF---TSS----GRYMAAAGC----------KGYPYFYNRDG-----TELHCS   82 (378)
Q Consensus        26 ~i~~~d~~~~~~~~~l~~~~-~~v~~~~~---sp~----g~~l~~~~~----------dg~i~iwd~~~-----~~~~~~   82 (378)
                      .++++|..+.+.+..+.... ..+.+++.   ..+    ..+|++|..          .|.|.+++...     ..+..+
T Consensus         3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i   82 (321)
T PF03178_consen    3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI   82 (321)
T ss_dssp             EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred             EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence            46777777777666555433 33444433   332    467887754          28899999544     233332


Q ss_pred             ---ccCCCeeEEEE---EEEEEeCCCeEEEEEcCCCc-EEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe----------
Q 046394           83 ---KEHGEVLKLQF---LLASINKLGQLRYQNVTMGE-IVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT----------  145 (378)
Q Consensus        83 ---~~~~~~~~l~~---~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~----------  145 (378)
                         .....+++++-   .++.+ .++.|.+|++...+ ...... ....+..+.....++++++|.....          
T Consensus        83 ~~~~~~g~V~ai~~~~~~lv~~-~g~~l~v~~l~~~~~l~~~~~-~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~~~  160 (321)
T PF03178_consen   83 HSTEVKGPVTAICSFNGRLVVA-VGNKLYVYDLDNSKTLLKKAF-YDSPFYITSLSVFKNYILVGDAMKSVSLLRYDEEN  160 (321)
T ss_dssp             EEEEESS-EEEEEEETTEEEEE-ETTEEEEEEEETTSSEEEEEE-E-BSSSEEEEEEETTEEEEEESSSSEEEEEEETTT
T ss_pred             EEEeecCcceEhhhhCCEEEEe-ecCEEEEEEccCcccchhhhe-ecceEEEEEEeccccEEEEEEcccCEEEEEEEccC
Confidence               22223466665   54333 34789999998877 433322 2222233333333557777765443          


Q ss_pred             -------eeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcC
Q 046394          146 -------MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLR  180 (378)
Q Consensus       146 -------~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~  180 (378)
                             -......++++.|-++++.++.+..+|.|.++...
T Consensus       161 ~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~  202 (321)
T PF03178_consen  161 NKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN  202 (321)
T ss_dssp             E-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred             CEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence                   11123346777777666678888888888877664

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.58  E-value=0.019  Score=52.92  Aligned_cols=161  Identities=16%  Similarity=0.096  Sum_probs=80.5

Q ss_pred             eecCCceeeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeeccCCCe
Q 046394           10 LEAEGVEKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKEHGEV   88 (378)
Q Consensus        10 l~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~   88 (378)
                      |.-...++++.+..++.-.++..........     +.....+|++.++ +|+-..++.|.|+. .+......+.....+
T Consensus        38 ls~npngr~v~V~g~geY~iyt~~~~r~k~~-----G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~~~~~~k~i~~~~~~  111 (443)
T PF04053_consen   38 LSHNPNGRFVLVCGDGEYEIYTALAWRNKAF-----GSGLSFVWSSRNR-YAVLESSSTIKIYKNFKNEVVKSIKLPFSV  111 (443)
T ss_dssp             EEE-TTSSEEEEEETTEEEEEETTTTEEEEE-----EE-SEEEE-TSSE-EEEE-TTS-EEEEETTEE-TT-----SS-E
T ss_pred             EEECCCCCEEEEEcCCEEEEEEccCCccccc-----CceeEEEEecCcc-EEEEECCCeEEEEEcCccccceEEcCCccc
Confidence            3333456667777777766666433333221     3345788998554 66666688899975 443332333322222


Q ss_pred             eEEEE--EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCeeeecCCCEEEEEEecCCCEEE
Q 046394           89 LKLQF--LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGTMLCHQGPVSALAFHPNGHLMA  166 (378)
Q Consensus        89 ~~l~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~~~~h~~~v~~~~~sp~g~~l~  166 (378)
                      ..+-.  +|...+ ++.|.+||+.+++.+..+..                              .+|..+.|+++|.+++
T Consensus       112 ~~If~G~LL~~~~-~~~i~~yDw~~~~~i~~i~v------------------------------~~vk~V~Ws~~g~~va  160 (443)
T PF04053_consen  112 EKIFGGNLLGVKS-SDFICFYDWETGKLIRRIDV------------------------------SAVKYVIWSDDGELVA  160 (443)
T ss_dssp             EEEE-SSSEEEEE-TTEEEEE-TTT--EEEEESS-------------------------------E-EEEEE-TTSSEEE
T ss_pred             ceEEcCcEEEEEC-CCCEEEEEhhHcceeeEEec------------------------------CCCcEEEEECCCCEEE
Confidence            33333  344443 34899999999999998752                              1367778888888877


Q ss_pred             EEECCCeEEEEEcCCc--------------eeeeeecCCceEEEEecCCCccccCCCC
Q 046394          167 TSGKDCKIKIWDLRKY--------------EVLQTLPGHAKTLDFSRKDSGDFSGSHN  210 (378)
Q Consensus       167 t~~~d~~i~iwd~~~~--------------~~~~~~~~~i~~~~~sp~g~~~~~~~~~  210 (378)
                      ..+.+ ++.|++....              ..+..+...|.+.+|..|  ..++....
T Consensus       161 l~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~  215 (443)
T PF04053_consen  161 LVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN  215 (443)
T ss_dssp             EE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT
T ss_pred             EEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC
Confidence            77755 4555554322              334444567888888766  44444333

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>smart00320 WD40 WD40 repeats

Probab=97.52  E-value=0.00022  Score=40.26  Aligned_cols=31  Identities=45%  Similarity=0.995  Sum_probs=28.4

Q ss_pred             ecCCCEEEEEEecCCCEEEEEECCCeEEEEE
Q 046394          148 CHQGPVSALAFHPNGHLMATSGKDCKIKIWD  178 (378)
Q Consensus       148 ~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd  178 (378)
                      .|...|.++.|+|++.++++++.|+.+++||
T Consensus        10 ~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320       10 GHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             ecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            5778899999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.37  E-value=0.0081  Score=57.18  Aligned_cols=120  Identities=9%  Similarity=0.060  Sum_probs=84.6

Q ss_pred             eeeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCC-----CCEEEEEeCCCcEEEEeC---CCCeEEeeccCCC
Q 046394           16 EKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSS-----GRYMAAAGCKGYPYFYNR---DGTELHCSKEHGE   87 (378)
Q Consensus        16 ~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~-----g~~l~~~~~dg~i~iwd~---~~~~~~~~~~~~~   87 (378)
                      +-..+-+.||.+.+-.+.+.+...++..+ .++.+++++|+     .+.+++||.-| +.++..   .......+....+
T Consensus        84 ey~asCS~DGkv~I~sl~~~~~~~~~df~-rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG  161 (846)
T KOG2066|consen   84 EYVASCSDDGKVVIGSLFTDDEITQYDFK-RPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEG  161 (846)
T ss_pred             ceEEEecCCCcEEEeeccCCccceeEecC-CcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCcc
Confidence            34444556777777778888887777776 78999999998     45789999888 888772   2222223444455


Q ss_pred             e-eEEEE---EEEEEeCCCeEEEEEcCCCcEEEEEecCCCC------eeEEEEcCCCCEEE
Q 046394           88 V-LKLQF---LLASINKLGQLRYQNVTMGEIVGNFWTGLGR------TDVIRVNPFNGVVS  138 (378)
Q Consensus        88 ~-~~l~~---~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~------v~~~~~s~~~~~l~  138 (378)
                      + .++.|   ++|-++.+| |++||+.+++.+..++.....      ...+.|.++.++++
T Consensus       162 ~I~~i~W~g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVI  221 (846)
T KOG2066|consen  162 PIHSIKWRGNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVI  221 (846)
T ss_pred             ceEEEEecCcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEE
Confidence            5 99999   788877776 899999999888777654333      34567776655443

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.27  E-value=0.0096  Score=58.19  Aligned_cols=56  Identities=14%  Similarity=0.169  Sum_probs=41.2

Q ss_pred             cCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee----cCCceEEEEecCCCcccc
Q 046394          149 HQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL----PGHAKTLDFSRKDSGDFS  206 (378)
Q Consensus       149 h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~----~~~i~~~~~sp~g~~~~~  206 (378)
                      ......|++-+.+| +||+|+.+|.||+||- .|....+.    +.+|..|..+.||++.+.
T Consensus       576 ~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwila  635 (794)
T PF08553_consen  576 SKNNFSCFATTEDG-YIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILA  635 (794)
T ss_pred             cCCCceEEEecCCc-eEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEE
Confidence            34456788888788 7999999999999994 34333333    578888888888886333

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.27  E-value=0.00096  Score=61.50  Aligned_cols=77  Identities=22%  Similarity=0.282  Sum_probs=64.3

Q ss_pred             CCeeEEEEcCCCCEEEEEcCCCe-------------eeecCCCEE-EEEEecCCCEEEEEECCCeEEEEEcCCceeeeee
Q 046394          123 GRTDVIRVNPFNGVVSLGHSGGT-------------MLCHQGPVS-ALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL  188 (378)
Q Consensus       123 ~~v~~~~~s~~~~~l~~~~~d~~-------------~~~h~~~v~-~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~  188 (378)
                      ..+.-+.|+|.-.+||.+..+|.             +.-|...++ +++|.|||+.||.|-.||+|++.|+.++..+..+
T Consensus        21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~~  100 (665)
T KOG4640|consen   21 INIKRIEWNPKMDLIATRTEKGELLIHRLNWQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVSF  100 (665)
T ss_pred             cceEEEEEcCccchhheeccCCcEEEEEeccceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceecc
Confidence            45667889999889998888885             333556666 9999999999999999999999999999888774


Q ss_pred             ----cCCceEEEEec
Q 046394          189 ----PGHAKTLDFSR  199 (378)
Q Consensus       189 ----~~~i~~~~~sp  199 (378)
                          ...+.++.|+|
T Consensus       101 ~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen  101 LFSVETDISKGIWDR  115 (665)
T ss_pred             ccccccchheeeccc
Confidence                57888899975

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.24  E-value=0.059  Score=48.65  Aligned_cols=64  Identities=14%  Similarity=0.093  Sum_probs=44.6

Q ss_pred             CceeeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCCCeE
Q 046394           14 GVEKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTEL   79 (378)
Q Consensus        14 ~~~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~   79 (378)
                      ...+.++.+..+...++|+.+++....... ...+....|||+|+.+|... ++.|++++..+...
T Consensus        12 ~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~   75 (353)
T PF00930_consen   12 NYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQE   75 (353)
T ss_dssp             EEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEE
T ss_pred             CcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCe
Confidence            344555556678889999999765433333 56788999999999998885 57899998543333

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.18  E-value=0.0012  Score=39.51  Aligned_cols=34  Identities=9%  Similarity=0.074  Sum_probs=30.6

Q ss_pred             CCceEEEEcCCCCEEEEEeCCCcEEEEeCCCCeE
Q 046394           46 LGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTEL   79 (378)
Q Consensus        46 ~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~   79 (378)
                      ..|.+++|||...+||.|+.+|.|.+|..+++.+
T Consensus        12 ~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~qri   45 (47)
T PF12894_consen   12 SRVSCMSWCPTMDLIALGTEDGEVLVYRLNWQRI   45 (47)
T ss_pred             CcEEEEEECCCCCEEEEEECCCeEEEEECCCcCc
Confidence            5688999999999999999999999999877654

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.18  E-value=0.016  Score=52.73  Aligned_cols=72  Identities=14%  Similarity=0.066  Sum_probs=48.9

Q ss_pred             eEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEE---eeccC-----C--CeeEEEE-------------E
Q 046394           38 QYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTELH---CSKEH-----G--EVLKLQF-------------L   94 (378)
Q Consensus        38 ~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~---~~~~~-----~--~~~~l~~-------------~   94 (378)
                      ..-+....+.|++++.|.-| ++|.|..+|.+.|.|+.|..+.   .+..|     .  .++++.|             .
T Consensus        79 ~~l~~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~  157 (395)
T PF08596_consen   79 LTLLDAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSIC  157 (395)
T ss_dssp             EEEE---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEE
T ss_pred             hhheeccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceE
Confidence            34455567899999998666 8999999999999998776542   22221     1  1367888             7


Q ss_pred             EEEEeCCCeEEEEEcC
Q 046394           95 LASINKLGQLRYQNVT  110 (378)
Q Consensus        95 l~s~~~d~~i~iwd~~  110 (378)
                      +++|...|.+.+|.+.
T Consensus       158 L~vGTn~G~v~~fkIl  173 (395)
T PF08596_consen  158 LLVGTNSGNVLTFKIL  173 (395)
T ss_dssp             EEEEETTSEEEEEEEE
T ss_pred             EEEEeCCCCEEEEEEe
Confidence            7778888999888764

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.11  E-value=0.045  Score=51.83  Aligned_cols=152  Identities=14%  Similarity=0.043  Sum_probs=95.3

Q ss_pred             ccceeeeeeccc-----ceeeEEeecCCCCceEEEEcCCCCEEEEEeC-CCcEEEEeCCCCe-------------EEeec
Q 046394           23 QEAIAREVDILS-----SRNQYDIMLPELGPYTLDFTSSGRYMAAAGC-KGYPYFYNRDGTE-------------LHCSK   83 (378)
Q Consensus        23 ~~~~i~~~d~~~-----~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~-dg~i~iwd~~~~~-------------~~~~~   83 (378)
                      .++.|.++|..+     ...+..+... ..+..+.+||||+++++++. +++|.|.|.....             +....
T Consensus       294 ~gn~V~VID~~t~~~~~~~v~~yIPVG-KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaeve  372 (635)
T PRK02888        294 GGSKVPVVDGRKAANAGSALTRYVPVP-KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPE  372 (635)
T ss_pred             CCCEEEEEECCccccCCcceEEEEECC-CCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeec
Confidence            457788999888     3455555553 67889999999999887766 8899999954321             23333


Q ss_pred             cCCCeeEEEE-----EEEEEeCCCeEEEEEcCC----------CcEEEEEecCCCCee-----EEEEcCCCCEEEEEcCC
Q 046394           84 EHGEVLKLQF-----LLASINKLGQLRYQNVTM----------GEIVGNFWTGLGRTD-----VIRVNPFNGVVSLGHSG  143 (378)
Q Consensus        84 ~~~~~~~l~~-----~l~s~~~d~~i~iwd~~~----------~~~~~~~~~~~~~v~-----~~~~s~~~~~l~~~~~d  143 (378)
                      -..++...+|     .+.|..-|..|-.||+..          ...+..+..|..+-.     .=.-.|+|++|++...-
T Consensus       373 vGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~nk~  452 (635)
T PRK02888        373 LGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLNKF  452 (635)
T ss_pred             cCCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEcccc
Confidence            3334566677     666777789999999876          234444444433222     12346888888876543


Q ss_pred             Ce--eeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCC
Q 046394          144 GT--MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRK  181 (378)
Q Consensus       144 ~~--~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~  181 (378)
                      ..  +.. -+     -+.|+...|+-.|.|....|+|..+
T Consensus       453 skdrfl~-vg-----pl~pen~qlidIsgdkM~lv~d~p~  486 (635)
T PRK02888        453 SKDRFLP-VG-----PLHPENDQLIDISGDKMKLVHDGPT  486 (635)
T ss_pred             ccccccC-CC-----CCCCCcceeEEccCCeeEEEecCCC
Confidence            22  000 01     1245555666666677677777654

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.10  E-value=0.02  Score=52.13  Aligned_cols=113  Identities=12%  Similarity=0.127  Sum_probs=77.6

Q ss_pred             EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCC--------EEEEEcCCCe---------------eeec-
Q 046394           94 LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNG--------VVSLGHSGGT---------------MLCH-  149 (378)
Q Consensus        94 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~--------~l~~~~~d~~---------------~~~h-  149 (378)
                      ++.++.....|+-.|++.|+.+..+..+.. |+-+.+.|++.        .|+--+.++.               ..+| 
T Consensus       348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kq  426 (644)
T KOG2395|consen  348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQ  426 (644)
T ss_pred             EeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccc
Confidence            666777777899999999999999887765 78888888764        2222233332               1111 


Q ss_pred             ---CCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee----cCCceEEEEecCCCccccCCC
Q 046394          150 ---QGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL----PGHAKTLDFSRKDSGDFSGSH  209 (378)
Q Consensus       150 ---~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~----~~~i~~~~~sp~g~~~~~~~~  209 (378)
                         .....|++-..+| ++|.||.+|.|++||- .+....+.    ..+|..|..+.||++.+....
T Consensus       427 y~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~  491 (644)
T KOG2395|consen  427 YSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATCK  491 (644)
T ss_pred             cccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEecc
Confidence               2233455555566 7999999999999997 54444443    678999999999997544433

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.04  E-value=0.25  Score=45.12  Aligned_cols=186  Identities=13%  Similarity=0.116  Sum_probs=117.0

Q ss_pred             ceeeEEEec-cceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeC---CCcEEEEeC-CCCeEEeeccCCCee
Q 046394           15 VEKTWRIKQ-EAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGC---KGYPYFYNR-DGTELHCSKEHGEVL   89 (378)
Q Consensus        15 ~~~~~~~~~-~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~---dg~i~iwd~-~~~~~~~~~~~~~~~   89 (378)
                      ..+.|.... .+.+.+.|..+.......... ..+..++++|++..+.++..   ++.+.+.|. ++...........+.
T Consensus        85 ~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG-~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P~  163 (381)
T COG3391          85 GNKVYVTTGDSNTVSVIDTATNTVLGSIPVG-LGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTPT  163 (381)
T ss_pred             CCeEEEecCCCCeEEEEcCcccceeeEeeec-cCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCcc
Confidence            344444443 588999998887777766654 37889999999988777655   678888884 455555543332336


Q ss_pred             EEEE------EEEEEeCCCeEEEEEcCCCcEEE-E---EecCCCCeeEEEEcCCCCEEEEEcCCC---e----------e
Q 046394           90 KLQF------LLASINKLGQLRYQNVTMGEIVG-N---FWTGLGRTDVIRVNPFNGVVSLGHSGG---T----------M  146 (378)
Q Consensus        90 ~l~~------~l~s~~~d~~i~iwd~~~~~~~~-~---~~~~~~~v~~~~~s~~~~~l~~~~~d~---~----------~  146 (378)
                      .+++      .+++-..++.|.+.|........ .   ..........+.++|+|..+.+.....   .          .
T Consensus       164 ~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v  243 (381)
T COG3391         164 GVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNV  243 (381)
T ss_pred             eEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceE
Confidence            6666      44555678999999976555442 1   011223456788889888666655443   2          1


Q ss_pred             eecCC-----CEEEEEEecCCCEEEEEE-CCCeEEEEEcCCceeeeee------cCCceEEEEecCC
Q 046394          147 LCHQG-----PVSALAFHPNGHLMATSG-KDCKIKIWDLRKYEVLQTL------PGHAKTLDFSRKD  201 (378)
Q Consensus       147 ~~h~~-----~v~~~~~sp~g~~l~t~~-~d~~i~iwd~~~~~~~~~~------~~~i~~~~~sp~g  201 (378)
                      .....     ....+.++|+|.++.+.. ..+.+.+.|..+......+      +..+..+++.+..
T Consensus       244 ~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  310 (381)
T COG3391         244 TATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPLY  310 (381)
T ss_pred             EEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceeccceeec
Confidence            11111     234568888888877664 3478888888877766655      1234555555543

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.95  E-value=0.14  Score=49.65  Aligned_cols=152  Identities=8%  Similarity=-0.065  Sum_probs=90.3

Q ss_pred             eeeeeecccc------eee--EEeec---C--CCCceEEEEcCCCCEEEEEeCCCcEEEEe--C-CCCeEEe---eccCC
Q 046394           26 IAREVDILSS------RNQ--YDIML---P--ELGPYTLDFTSSGRYMAAAGCKGYPYFYN--R-DGTELHC---SKEHG   86 (378)
Q Consensus        26 ~i~~~d~~~~------~~~--~~l~~---~--~~~v~~~~~sp~g~~l~~~~~dg~i~iwd--~-~~~~~~~---~~~~~   86 (378)
                      .+++||++..      +++  +.+..   .  ..++.+++.|.+-..+|+|-.+|.|..+.  + ...-.+.   ..+..
T Consensus        93 llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~  172 (933)
T KOG2114|consen   93 LLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKE  172 (933)
T ss_pred             EEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCC
Confidence            6888888644      222  12222   2  34577999999988999999999999986  1 1111122   22223


Q ss_pred             CeeEEEE-----EEEEEeCCCeEEEEEcCCCcE-EEEEecCCCCeeEEEEcCCCCEEEEEcCCCe-eeecCCCEEEEEEe
Q 046394           87 EVLKLQF-----LLASINKLGQLRYQNVTMGEI-VGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT-MLCHQGPVSALAFH  159 (378)
Q Consensus        87 ~~~~l~~-----~l~s~~~d~~i~iwd~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~-~~~h~~~v~~~~~s  159 (378)
                      .++.+.+     .++-+..-..|.+|.+....+ ...+..+..+++|..+++....|++++.... +....+.=.|.+|.
T Consensus       173 pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e~l~fY~sd~~~~cfaf~  252 (933)
T KOG2114|consen  173 PITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSEFLYFYDSDGRGPCFAFE  252 (933)
T ss_pred             CceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCceEEEEcCCCcceeeeec
Confidence            3488888     212222346789999874332 4446667778888888887776666666555 33334444556665


Q ss_pred             cCCCEEEEEECCCeEEEE
Q 046394          160 PNGHLMATSGKDCKIKIW  177 (378)
Q Consensus       160 p~g~~l~t~~~d~~i~iw  177 (378)
                      -.++.++....-|.+.+.
T Consensus       253 ~g~kk~~~~~~~g~~L~v  270 (933)
T KOG2114|consen  253 VGEKKEMLVFSFGLLLCV  270 (933)
T ss_pred             CCCeEEEEEEecCEEEEE
Confidence            445555554443433333

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=96.90  E-value=0.44  Score=47.39  Aligned_cols=174  Identities=14%  Similarity=0.121  Sum_probs=106.9

Q ss_pred             ceeeEEEeccceeeeeecccceeeEEeecCCCC--------ceEEEEc----------------CCCCEEEEEeCCCcEE
Q 046394           15 VEKTWRIKQEAIAREVDILSSRNQYDIMLPELG--------PYTLDFT----------------SSGRYMAAAGCKGYPY   70 (378)
Q Consensus        15 ~~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~--------v~~~~~s----------------p~g~~l~~~~~dg~i~   70 (378)
                      .+..|.....+.+..+|..|++.+..+......        ...+++.                ..+..|+.++.|+.+.
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li  273 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI  273 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence            455666667899999999999999887654221        1123332                1234788888999999


Q ss_pred             EEe-CCCCeEEeeccCCC----------------e-e-EEEE--EEEEEeC----------CCeEEEEEcCCCcEEEEEe
Q 046394           71 FYN-RDGTELHCSKEHGE----------------V-L-KLQF--LLASINK----------LGQLRYQNVTMGEIVGNFW  119 (378)
Q Consensus        71 iwd-~~~~~~~~~~~~~~----------------~-~-~l~~--~l~s~~~----------d~~i~iwd~~~~~~~~~~~  119 (378)
                      -.| .+|+.+..+.....                . . -+.+  .++.++.          +|.|+-+|+.+|+.+..+.
T Consensus       274 ALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~  353 (764)
T TIGR03074       274 ALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWD  353 (764)
T ss_pred             EEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEe
Confidence            999 67877765532211                1 1 1112  4555532          6889999999999988775


Q ss_pred             cCC-----------------CCe-eEEEEcCCCCEEEEEcCCCe--------------------------------ee--
Q 046394          120 TGL-----------------GRT-DVIRVNPFNGVVSLGHSGGT--------------------------------ML--  147 (378)
Q Consensus       120 ~~~-----------------~~v-~~~~~s~~~~~l~~~~~d~~--------------------------------~~--  147 (378)
                      ...                 ..+ ..+++++...+++.+..+..                                +.  
T Consensus       354 ~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~~  433 (764)
T TIGR03074       354 PGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQTV  433 (764)
T ss_pred             cCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEeccc
Confidence            310                 111 34566676666665443221                                10  


Q ss_pred             ecC-------CCEEEEEEec-CCC---EEEEEECCCeEEEEEcCCceeeeee
Q 046394          148 CHQ-------GPVSALAFHP-NGH---LMATSGKDCKIKIWDLRKYEVLQTL  188 (378)
Q Consensus       148 ~h~-------~~v~~~~~sp-~g~---~l~t~~~d~~i~iwd~~~~~~~~~~  188 (378)
                      .|.       ....-+.+.- +|+   .++.++.+|.+.++|.++|+++...
T Consensus       434 ~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~  485 (764)
T TIGR03074       434 HHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPV  485 (764)
T ss_pred             CCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeec
Confidence            110       0011122322 553   6888999999999999999998765

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.86  E-value=0.0043  Score=37.16  Aligned_cols=34  Identities=21%  Similarity=0.443  Sum_probs=29.8

Q ss_pred             CCCEEEEEEecCCCEEEEEECCCeEEEEEcCCcee
Q 046394          150 QGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEV  184 (378)
Q Consensus       150 ~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~  184 (378)
                      ...|.+++|+|...+||.++.+|.|.||.+ +++.
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence            457899999999999999999999999998 5543

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=96.85  E-value=0.16  Score=44.48  Aligned_cols=41  Identities=15%  Similarity=0.131  Sum_probs=26.4

Q ss_pred             CeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCC
Q 046394          102 GQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSG  143 (378)
Q Consensus       102 ~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d  143 (378)
                      |.|+.+|. .+..+..+..+-...+.|+||||++.++.+...
T Consensus       143 G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~  183 (307)
T COG3386         143 GSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTP  183 (307)
T ss_pred             ceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCC
Confidence            33444443 466666665555667889999999877766543

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=96.83  E-value=0.3  Score=42.87  Aligned_cols=168  Identities=13%  Similarity=0.155  Sum_probs=97.6

Q ss_pred             eEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe--CCCCeEEe----eccCCC-e-e
Q 046394           18 TWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN--RDGTELHC----SKEHGE-V-L   89 (378)
Q Consensus        18 ~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd--~~~~~~~~----~~~~~~-~-~   89 (378)
                      .+.++....|.|.|+...+.+..+...  ++..+-=+++ +-+.+-|.||.+.-..  ..|+....    +..... . .
T Consensus       111 V~N~TPa~SVtVVDl~~~kvv~ei~~P--GC~~iyP~~~-~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~  187 (342)
T PF06433_consen  111 VQNFTPATSVTVVDLAAKKVVGEIDTP--GCWLIYPSGN-RGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFE  187 (342)
T ss_dssp             EEEESSSEEEEEEETTTTEEEEEEEGT--SEEEEEEEET-TEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S
T ss_pred             EEccCCCCeEEEEECCCCceeeeecCC--CEEEEEecCC-CceEEEecCCceEEEEECCCCCEeEeeccccCCCCccccc
Confidence            344455688888888888888777664  3333322222 3467777899888776  45655422    111112 1 2


Q ss_pred             EEEE-----EEEEEeCCCeEEEEEcCCCcEE--EEEec----------CCCCeeEEEEcCCCCEEEEEcCCCe-------
Q 046394           90 KLQF-----LLASINKLGQLRYQNVTMGEIV--GNFWT----------GLGRTDVIRVNPFNGVVSLGHSGGT-------  145 (378)
Q Consensus        90 ~l~~-----~l~s~~~d~~i~iwd~~~~~~~--~~~~~----------~~~~v~~~~~s~~~~~l~~~~~d~~-------  145 (378)
                      .-.+     .++-.+.+|.|+-.|+......  ..+..          -++.-.-+++++..+.|++.-..|.       
T Consensus       188 ~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdp  267 (342)
T PF06433_consen  188 HPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDP  267 (342)
T ss_dssp             --EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-
T ss_pred             ccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCC
Confidence            2232     4555678888888888655432  22211          1234556888887766665433322       


Q ss_pred             ----------------eeecCCCEEEEEEecCCC-EEEEE-ECCCeEEEEEcCCceeeeee
Q 046394          146 ----------------MLCHQGPVSALAFHPNGH-LMATS-GKDCKIKIWDLRKYEVLQTL  188 (378)
Q Consensus       146 ----------------~~~h~~~v~~~~~sp~g~-~l~t~-~~d~~i~iwd~~~~~~~~~~  188 (378)
                                      ...-..++.+|+++.+.+ +|++. ..++.|.+||..+|+.++++
T Consensus       268 gteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~  328 (342)
T PF06433_consen  268 GTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSI  328 (342)
T ss_dssp             EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE
T ss_pred             ceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeeh
Confidence                            011123567899998766 55444 45789999999999999888

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=96.79  E-value=0.11  Score=37.38  Aligned_cols=87  Identities=17%  Similarity=0.030  Sum_probs=63.3

Q ss_pred             CceeeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEeeccCCCeeEEEE
Q 046394           14 GVEKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTELHCSKEHGEVLKLQF   93 (378)
Q Consensus        14 ~~~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~l~~   93 (378)
                      |....+..+.|..|++|+-.  +.+..+..+ ..|.+++-... ..++.+..+|+|-+|+.. ..++.++....++++.+
T Consensus        14 g~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~-~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~-~RlWRiKSK~~~~~~~~   88 (111)
T PF14783_consen   14 GENELLVGSDDFEIRVFKGD--EIVAEITET-DKVTSLCSLGG-GRFAYALANGTVGVYDRS-QRLWRIKSKNQVTSMAF   88 (111)
T ss_pred             CcceEEEecCCcEEEEEeCC--cEEEEEecc-cceEEEEEcCC-CEEEEEecCCEEEEEeCc-ceeeeeccCCCeEEEEE
Confidence            45677888889999998743  566677665 77888887765 578899999999999853 34555555555666655


Q ss_pred             ---------EEEEEeCCCeEE
Q 046394           94 ---------LLASINKLGQLR  105 (378)
Q Consensus        94 ---------~l~s~~~d~~i~  105 (378)
                               .|++|-.+|.|-
T Consensus        89 ~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   89 YDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             EcCCCCCceEEEEEecCCeEE
Confidence                     677877777764

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.75  E-value=0.057  Score=47.50  Aligned_cols=66  Identities=14%  Similarity=0.282  Sum_probs=49.7

Q ss_pred             eEEEE------EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCeeeecCCCEEEEEEecCC
Q 046394           89 LKLQF------LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGTMLCHQGPVSALAFHPNG  162 (378)
Q Consensus        89 ~~l~~------~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~~~~h~~~v~~~~~sp~g  162 (378)
                      .+++|      ++..++.+..|.|.|+++...+..+.                            .| ..+.+++|.-+.
T Consensus       197 rdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~----------------------------a~-~~~wSC~wDlde  247 (463)
T KOG1645|consen  197 RDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYI----------------------------AY-NQIWSCCWDLDE  247 (463)
T ss_pred             hhhccCccccceeeeeccCceEEEEecccceeeehee----------------------------cc-CCceeeeeccCC
Confidence            66666      67788888888888888877776664                            23 567788887744


Q ss_pred             -CEEEEEECCCeEEEEEcCCce
Q 046394          163 -HLMATSGKDCKIKIWDLRKYE  183 (378)
Q Consensus       163 -~~l~t~~~d~~i~iwd~~~~~  183 (378)
                       +++..|-..|.|.|||++..+
T Consensus       248 ~h~IYaGl~nG~VlvyD~R~~~  269 (463)
T KOG1645|consen  248 RHVIYAGLQNGMVLVYDMRQPE  269 (463)
T ss_pred             cceeEEeccCceEEEEEccCCC
Confidence             567777789999999998643

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=96.73  E-value=0.41  Score=45.68  Aligned_cols=169  Identities=11%  Similarity=0.084  Sum_probs=103.9

Q ss_pred             eeeEEEeccceeeeeecccceeeEEeecCC-CCce---E-------EEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeec
Q 046394           16 EKTWRIKQEAIAREVDILSSRNQYDIMLPE-LGPY---T-------LDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSK   83 (378)
Q Consensus        16 ~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~-~~v~---~-------~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~   83 (378)
                      +..|....++.|..+|..+++.+....... ..+.   +       +++.  +..+++++.++.|.-.| .+|+.+....
T Consensus        70 g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~--~~~v~v~t~dg~l~ALDa~TGk~~W~~~  147 (527)
T TIGR03075        70 GVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALY--DGKVFFGTLDARLVALDAKTGKVVWSKK  147 (527)
T ss_pred             CEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEE--CCEEEEEcCCCEEEEEECCCCCEEeecc
Confidence            345555667889999999999988876421 1111   1       1222  34677888899999999 5788876654


Q ss_pred             cC--C---Ce-eE-EEE--EEEEEe------CCCeEEEEEcCCCcEEEEEecCCC-------------------------
Q 046394           84 EH--G---EV-LK-LQF--LLASIN------KLGQLRYQNVTMGEIVGNFWTGLG-------------------------  123 (378)
Q Consensus        84 ~~--~---~~-~~-l~~--~l~s~~------~d~~i~iwd~~~~~~~~~~~~~~~-------------------------  123 (378)
                      ..  .   .. .. +.+  .++.+.      .+|.|..+|..+|+.+..+..-..                         
T Consensus       148 ~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~  227 (527)
T TIGR03075       148 NGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDA  227 (527)
T ss_pred             cccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCCc
Confidence            21  1   11 11 222  344332      368999999999998876543211                         


Q ss_pred             ------Cee-EEEEcCCCCEEEEEcCC-----Ce---------------------------eeecC-------CCEEEEE
Q 046394          124 ------RTD-VIRVNPFNGVVSLGHSG-----GT---------------------------MLCHQ-------GPVSALA  157 (378)
Q Consensus       124 ------~v~-~~~~s~~~~~l~~~~~d-----~~---------------------------~~~h~-------~~v~~~~  157 (378)
                            .+. .+++.|...+++.+..+     +.                           ...|.       ....-+.
T Consensus       228 ~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d  307 (527)
T TIGR03075       228 WKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFD  307 (527)
T ss_pred             cccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEE
Confidence                  111 34777777777777644     11                           11111       1112223


Q ss_pred             EecCCC---EEEEEECCCeEEEEEcCCceeee
Q 046394          158 FHPNGH---LMATSGKDCKIKIWDLRKYEVLQ  186 (378)
Q Consensus       158 ~sp~g~---~l~t~~~d~~i~iwd~~~~~~~~  186 (378)
                      +..+|+   .++.++.+|.+.+.|..+|+++.
T Consensus       308 ~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~  339 (527)
T TIGR03075       308 LKKDGKPRKLLAHADRNGFFYVLDRTNGKLLS  339 (527)
T ss_pred             eccCCcEEEEEEEeCCCceEEEEECCCCceec
Confidence            334666   67789999999999999999874

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.66  E-value=0.1  Score=49.82  Aligned_cols=52  Identities=17%  Similarity=0.284  Sum_probs=39.4

Q ss_pred             CCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee----cCCceEEEEecCC
Q 046394          150 QGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL----PGHAKTLDFSRKD  201 (378)
Q Consensus       150 ~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~----~~~i~~~~~sp~g  201 (378)
                      ...+..+.+||+.++|+-=..+|.|.+-+....+.+..+    +.+...++|.-+.
T Consensus       216 ~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcgnd  271 (829)
T KOG2280|consen  216 NSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCGND  271 (829)
T ss_pred             CceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceeecCC
Confidence            356778889999999999899998888888777777666    4455567776544

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=96.66  E-value=0.46  Score=42.57  Aligned_cols=182  Identities=12%  Similarity=0.025  Sum_probs=88.0

Q ss_pred             ceeeeeecccceeeEEeecCCCCce-----EEEEcCCCCEEEEEeC-CC--cEEEEeCCCCeEEeeccCCCe--eEEEE-
Q 046394           25 AIAREVDILSSRNQYDIMLPELGPY-----TLDFTSSGRYMAAAGC-KG--YPYFYNRDGTELHCSKEHGEV--LKLQF-   93 (378)
Q Consensus        25 ~~i~~~d~~~~~~~~~l~~~~~~v~-----~~~~sp~g~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~--~~l~~-   93 (378)
                      +.-...|..||..+..|..+.....     .=+|.+||+.|+.++. +|  .+++.|+....+..|....+.  ..... 
T Consensus        10 ~~~~~~D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s   89 (386)
T PF14583_consen   10 EFKTWIDPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLS   89 (386)
T ss_dssp             -EEEEE-TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-
T ss_pred             ceeEEeCCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEe
Confidence            3445568889988888876543332     3367889977666555 55  566677777777777665432  22222 


Q ss_pred             ----EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEE--cCCCCEEEEEcC---CCe-------------------
Q 046394           94 ----LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRV--NPFNGVVSLGHS---GGT-------------------  145 (378)
Q Consensus        94 ----~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~--s~~~~~l~~~~~---d~~-------------------  145 (378)
                          .++-...+..|.-.|+.+.+....+......+....|  +.++..++..-.   +..                   
T Consensus        90 ~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~  169 (386)
T PF14583_consen   90 PDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCR  169 (386)
T ss_dssp             TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EE
T ss_pred             cCCCeEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCce
Confidence                3333334567888899888765555555555554555  345665543221   111                   


Q ss_pred             -------------eeecCCCEEEEEEec-CCCEEEEEEC---CC-eEEEEEcCC-ceeeeee--c---CCceEEEEecCC
Q 046394          146 -------------MLCHQGPVSALAFHP-NGHLMATSGK---DC-KIKIWDLRK-YEVLQTL--P---GHAKTLDFSRKD  201 (378)
Q Consensus       146 -------------~~~h~~~v~~~~~sp-~g~~l~t~~~---d~-~i~iwd~~~-~~~~~~~--~---~~i~~~~~sp~g  201 (378)
                                   +..-...+..+.|+| +...|+-|-.   +. .-|||-+++ +.....+  +   ..+.-=-|+|||
T Consensus       170 i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG  249 (386)
T PF14583_consen  170 IFTIDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDG  249 (386)
T ss_dssp             EEEEETTT--EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTS
T ss_pred             EEEEECCCCceeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCC
Confidence                         333456678899999 4555555543   22 237787664 4444444  1   234455788998


Q ss_pred             Ccccc
Q 046394          202 SGDFS  206 (378)
Q Consensus       202 ~~~~~  206 (378)
                      ....+
T Consensus       250 ~~i~y  254 (386)
T PF14583_consen  250 STIWY  254 (386)
T ss_dssp             S-EEE
T ss_pred             CEEEE
Confidence            86433

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=96.65  E-value=0.46  Score=42.53  Aligned_cols=179  Identities=11%  Similarity=-0.017  Sum_probs=83.5

Q ss_pred             cceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEe-eccCCCe-eEEEE-------E
Q 046394           24 EAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTELHC-SKEHGEV-LKLQF-------L   94 (378)
Q Consensus        24 ~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~-~~l~~-------~   94 (378)
                      ...+...|+.+++...--.+.........++|+++.++-......|+..|+....... +....+. ....|       .
T Consensus        59 ~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~  138 (386)
T PF14583_consen   59 NRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTK  138 (386)
T ss_dssp             S-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSE
T ss_pred             CcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccE
Confidence            4667888998887654444333344467788988887665555678888865544433 3333332 12222       1


Q ss_pred             EEE----------------------EeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCE-EEEEcCCCe------
Q 046394           95 LAS----------------------INKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGV-VSLGHSGGT------  145 (378)
Q Consensus        95 l~s----------------------~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~~d~~------  145 (378)
                      ++.                      +.-...|.-.|+.+|+....+. ....+..+.|+|.... |+.+.....      
T Consensus       139 ~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~R  217 (386)
T PF14583_consen  139 LVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQR  217 (386)
T ss_dssp             EEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-S
T ss_pred             EEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceE
Confidence            111                      1112456677888887655554 4466778889986644 333332211      


Q ss_pred             -------------eeecC--CCEEEEEEecCCCEEEEEE-----CCCeEEEEEcCCceeeeeec-CCceEEEEecCCCc
Q 046394          146 -------------MLCHQ--GPVSALAFHPNGHLMATSG-----KDCKIKIWDLRKYEVLQTLP-GHAKTLDFSRKDSG  203 (378)
Q Consensus       146 -------------~~~h~--~~v~~~~~sp~g~~l~t~~-----~d~~i~iwd~~~~~~~~~~~-~~i~~~~~sp~g~~  203 (378)
                                   +..|.  ..+..=-|.|||..|.--+     .+..|.-+|+.++....... ....-+.-++||..
T Consensus       218 iW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~p~~~H~~ss~Dg~L  296 (386)
T PF14583_consen  218 IWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEMPWCSHFMSSPDGKL  296 (386)
T ss_dssp             EEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE-SEEEEEE-TTSSE
T ss_pred             EEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeCCceeeeEEcCCCCE
Confidence                         11111  2234446889998765433     24467778888876533222 23334445666664

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.64  E-value=0.12  Score=46.60  Aligned_cols=144  Identities=13%  Similarity=0.168  Sum_probs=80.3

Q ss_pred             cCCCCEEEEE---------eCCCcEEEEeCCCCeEEeeccCC-CeeEEEE-----EEEEEeCCCeEEEEEcCCCcEEEEE
Q 046394           54 TSSGRYMAAA---------GCKGYPYFYNRDGTELHCSKEHG-EVLKLQF-----LLASINKLGQLRYQNVTMGEIVGNF  118 (378)
Q Consensus        54 sp~g~~l~~~---------~~dg~i~iwd~~~~~~~~~~~~~-~~~~l~~-----~l~s~~~d~~i~iwd~~~~~~~~~~  118 (378)
                      |||+++++..         +..+.+.|||+....+..+.... ......|     .++.. .++.|.++++.++...+.-
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v-~~~nly~~~~~~~~~~~lT   79 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFV-RDNNLYLRDLATGQETQLT   79 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEE-ETTEEEEESSTTSEEEESE
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCCccccccceeecCCCeeEEE-ecCceEEEECCCCCeEEec
Confidence            6888887763         22457899997777666665543 3366667     44443 3578999988777544322


Q ss_pred             ecC-----------------CCCeeEEEEcCCCCEEEEEcCCCe---------eeecCC---CEEEEEEecCCCEEEEEE
Q 046394          119 WTG-----------------LGRTDVIRVNPFNGVVSLGHSGGT---------MLCHQG---PVSALAFHPNGHLMATSG  169 (378)
Q Consensus       119 ~~~-----------------~~~v~~~~~s~~~~~l~~~~~d~~---------~~~h~~---~v~~~~~sp~g~~l~t~~  169 (378)
                      ...                 -+.-..+.|||||+.|+....|..         ......   .+..+.+---|.-.... 
T Consensus        80 ~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v-  158 (353)
T PF00930_consen   80 TDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRV-  158 (353)
T ss_dssp             S--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EE-
T ss_pred             cccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCce-
Confidence            111                 123467889999999988776654         001110   23333331122211111 


Q ss_pred             CCCeEEEEEcCCceeee-ee-------cCCceEEEEecCCC
Q 046394          170 KDCKIKIWDLRKYEVLQ-TL-------PGHAKTLDFSRKDS  202 (378)
Q Consensus       170 ~d~~i~iwd~~~~~~~~-~~-------~~~i~~~~~sp~g~  202 (378)
                         .+.|+|+.+++... ..       ...+..+.|++++.
T Consensus       159 ---~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~  196 (353)
T PF00930_consen  159 ---SLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGK  196 (353)
T ss_dssp             ---EEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTE
T ss_pred             ---EEEEEECCCCcEEEeeeccccCCCccCcccceecCCCc
Confidence               46778888776532 11       24578899999988

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=96.59  E-value=0.0096  Score=55.88  Aligned_cols=88  Identities=24%  Similarity=0.237  Sum_probs=70.6

Q ss_pred             EEEEEeCCCeEEEEEcCCCcEE-EEEecCCCCeeEEEEcCCCCEEEEEcCCCe--------------------eeecCCC
Q 046394           94 LLASINKLGQLRYQNVTMGEIV-GNFWTGLGRTDVIRVNPFNGVVSLGHSGGT--------------------MLCHQGP  152 (378)
Q Consensus        94 ~l~s~~~d~~i~iwd~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~--------------------~~~h~~~  152 (378)
                      +++.|+.-|.+++|+-..+... ....+..+.+..+..|++..++|.|+..|.                    ...|...
T Consensus        47 ~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~r  126 (726)
T KOG3621|consen   47 YLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCR  126 (726)
T ss_pred             eEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccccccCCce
Confidence            8889999999999997666543 223334566677788999999999888887                    3347889


Q ss_pred             EEEEEEecCCCEEEEEECCCeEEEEEcCC
Q 046394          153 VSALAFHPNGHLMATSGKDCKIKIWDLRK  181 (378)
Q Consensus       153 v~~~~~sp~g~~l~t~~~d~~i~iwd~~~  181 (378)
                      |++++|++++..+.+|...|.|.+--+.+
T Consensus       127 VTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  127 VTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             EEEEEecccccEEeecCCCceEEEEEech
Confidence            99999999999999999999988776655

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=96.56  E-value=0.47  Score=44.94  Aligned_cols=96  Identities=9%  Similarity=0.061  Sum_probs=64.1

Q ss_pred             cceeeeeecccceeeEEeecCCCC--------------------c-eEEEEcCCCCEEEEEeCCC---------------
Q 046394           24 EAIAREVDILSSRNQYDIMLPELG--------------------P-YTLDFTSSGRYMAAAGCKG---------------   67 (378)
Q Consensus        24 ~~~i~~~d~~~~~~~~~l~~~~~~--------------------v-~~~~~sp~g~~l~~~~~dg---------------   67 (378)
                      ++.+..+|..+++.++........                    + .+.++.+.+..+++++.++               
T Consensus       174 ~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~  253 (488)
T cd00216         174 RGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNL  253 (488)
T ss_pred             CcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCC
Confidence            567889999999998887653110                    1 1345555566788887665               


Q ss_pred             ---cEEEEe-CCCCeEEeeccC-C------Cee-----EEE-E------EEEEEeCCCeEEEEEcCCCcEEEEEe
Q 046394           68 ---YPYFYN-RDGTELHCSKEH-G------EVL-----KLQ-F------LLASINKLGQLRYQNVTMGEIVGNFW  119 (378)
Q Consensus        68 ---~i~iwd-~~~~~~~~~~~~-~------~~~-----~l~-~------~l~s~~~d~~i~iwd~~~~~~~~~~~  119 (378)
                         .|.-+| .+|+.+..+... .      ...     .+. .      .++.++.+|.+...|..+|+.+....
T Consensus       254 ~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~  328 (488)
T cd00216         254 YTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARP  328 (488)
T ss_pred             ceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeE
Confidence               688888 577777765421 1      101     111 1      46777889999999999999887764

The alignment model contains an 8-bladed beta-propeller.

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=96.54  E-value=0.2  Score=45.75  Aligned_cols=38  Identities=16%  Similarity=0.271  Sum_probs=32.8

Q ss_pred             CCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee
Q 046394          151 GPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL  188 (378)
Q Consensus       151 ~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~  188 (378)
                      -.+.+++.+|++++.|+...=|.|.++|+.++..++.+
T Consensus       308 R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmW  345 (415)
T PF14655_consen  308 REGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMW  345 (415)
T ss_pred             ceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhh
Confidence            44788999999998888877889999999998887776

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=96.52  E-value=0.018  Score=53.51  Aligned_cols=86  Identities=20%  Similarity=0.121  Sum_probs=72.1

Q ss_pred             CCceEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEeeccCCC-e-eEEEE-----EEEEEeCCCeEEEEEcCCCcEEEEE
Q 046394           46 LGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTELHCSKEHGE-V-LKLQF-----LLASINKLGQLRYQNVTMGEIVGNF  118 (378)
Q Consensus        46 ~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~-~~l~~-----~l~s~~~d~~i~iwd~~~~~~~~~~  118 (378)
                      ..+.-+.|+|.-..||++..+|.|.++..+-+.+.++..|.. + .+++|     ++|.|-.||+|++.|+.++..+..+
T Consensus        21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~~  100 (665)
T KOG4640|consen   21 INIKRIEWNPKMDLIATRTEKGELLIHRLNWQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVSF  100 (665)
T ss_pred             cceEEEEEcCccchhheeccCCcEEEEEeccceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceecc
Confidence            467899999999999999999999999988889999986665 4 59999     9999999999999999999887774


Q ss_pred             ec-CCCCeeEEEEc
Q 046394          119 WT-GLGRTDVIRVN  131 (378)
Q Consensus       119 ~~-~~~~v~~~~~s  131 (378)
                      .. ....|.++.|+
T Consensus       101 ~~s~e~~is~~~w~  114 (665)
T KOG4640|consen  101 LFSVETDISKGIWD  114 (665)
T ss_pred             ccccccchheeecc
Confidence            22 33566777776

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=96.51  E-value=0.28  Score=40.30  Aligned_cols=126  Identities=11%  Similarity=0.106  Sum_probs=75.6

Q ss_pred             CceEEEEcCCCCEEEEEeC----------CCcEEEEeCCCCeEEeeccCCCe-eEEEE------EEEEEeCCCeEEEEE-
Q 046394           47 GPYTLDFTSSGRYMAAAGC----------KGYPYFYNRDGTELHCSKEHGEV-LKLQF------LLASINKLGQLRYQN-  108 (378)
Q Consensus        47 ~v~~~~~sp~g~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~-~~l~~------~l~s~~~d~~i~iwd-  108 (378)
                      ..+.-..+|+|++.+ |..          .|.++.|-..++. ..+...-++ +.++|      +.++-+.+-+|.-|| 
T Consensus       110 R~NDgkvdP~Gryy~-GtMad~~~~le~~~g~Ly~~~~~h~v-~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dy  187 (310)
T KOG4499|consen  110 RLNDGKVDPDGRYYG-GTMADFGDDLEPIGGELYSWLAGHQV-ELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDY  187 (310)
T ss_pred             ccccCccCCCCceee-eeeccccccccccccEEEEeccCCCc-eeeehhccCCccccccccCcEEEEEccCceEEeeeec
Confidence            344556789999843 322          2344555443332 223333344 77888      666777788887787 


Q ss_pred             -cCCCcE-----EEEEecCCCCeeEEEEcCCCCEEEEEcCCCeeeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCc
Q 046394          109 -VTMGEI-----VGNFWTGLGRTDVIRVNPFNGVVSLGHSGGTMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKY  182 (378)
Q Consensus       109 -~~~~~~-----~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~  182 (378)
                       ..+|..     +..+...         .|.              .+ ...-.+++..+|++.+++-..++|...|..+|
T Consensus       188 d~~tG~~snr~~i~dlrk~---------~~~--------------e~-~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tG  243 (310)
T KOG4499|consen  188 DCPTGDLSNRKVIFDLRKS---------QPF--------------ES-LEPDGMTIDTEGNLYVATFNGGTVQKVDPTTG  243 (310)
T ss_pred             CCCcccccCcceeEEeccC---------CCc--------------CC-CCCCcceEccCCcEEEEEecCcEEEEECCCCC
Confidence             555543     2222110         000              11 11123455668999999988999999999999


Q ss_pred             eeeeee---cCCceEEEEe
Q 046394          183 EVLQTL---PGHAKTLDFS  198 (378)
Q Consensus       183 ~~~~~~---~~~i~~~~~s  198 (378)
                      +.+.++   ...++|++|-
T Consensus       244 K~L~eiklPt~qitsccFg  262 (310)
T KOG4499|consen  244 KILLEIKLPTPQITSCCFG  262 (310)
T ss_pred             cEEEEEEcCCCceEEEEec
Confidence            998877   3567777774

>PRK13616 lipoprotein LpqB; Provisional

Probab=96.46  E-value=0.56  Score=45.31  Aligned_cols=33  Identities=18%  Similarity=0.055  Sum_probs=21.7

Q ss_pred             CCceEEEEcCCCCEEEEEe------CCC--cEEEEeCCCCe
Q 046394           46 LGPYTLDFTSSGRYMAAAG------CKG--YPYFYNRDGTE   78 (378)
Q Consensus        46 ~~v~~~~~sp~g~~l~~~~------~dg--~i~iwd~~~~~   78 (378)
                      ..+.+.++||+|..+|..-      .|+  .|.+++..+..
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~  390 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVA  390 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcc
Confidence            4577999999999877654      233  45555654433

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.44  E-value=0.29  Score=41.41  Aligned_cols=163  Identities=16%  Similarity=0.163  Sum_probs=97.2

Q ss_pred             cceeeeeecccceeeEEeecCCCCce--EEEEcCCCCEEEEEeC-----CCcEEEEeCCC--CeEEeeccCC-CeeEEEE
Q 046394           24 EAIAREVDILSSRNQYDIMLPELGPY--TLDFTSSGRYMAAAGC-----KGYPYFYNRDG--TELHCSKEHG-EVLKLQF   93 (378)
Q Consensus        24 ~~~i~~~d~~~~~~~~~l~~~~~~v~--~~~~sp~g~~l~~~~~-----dg~i~iwd~~~--~~~~~~~~~~-~~~~l~~   93 (378)
                      .-...++|..+.+....+....+.-+  .=.|||||.+|+..-.     -|.|-|||...  ..+-.+..|. ++..+.+
T Consensus        90 Gtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~l  169 (366)
T COG3490          90 GTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTL  169 (366)
T ss_pred             CceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEE
Confidence            44566777777776665543322111  3368999999887643     36899999543  2334455555 3466666


Q ss_pred             -----EEEEEeC------------------CCeEEEEEcCCCcEEEEEe----cCCCCeeEEEEcCCCCEEEEEcCCCe-
Q 046394           94 -----LLASINK------------------LGQLRYQNVTMGEIVGNFW----TGLGRTDVIRVNPFNGVVSLGHSGGT-  145 (378)
Q Consensus        94 -----~l~s~~~------------------d~~i~iwd~~~~~~~~~~~----~~~~~v~~~~~s~~~~~l~~~~~d~~-  145 (378)
                           .++.+..                  .-++.+.|..+|+.+.+..    .+.-.+..++..+||...+.+-..|. 
T Consensus       170 m~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~  249 (366)
T COG3490         170 MADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPR  249 (366)
T ss_pred             ecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCC
Confidence                 3333221                  1234455655666554332    23456888999999988877665554 


Q ss_pred             -----ee--------------------ecCCCEEEEEEecCCCEEE-EEECCCeEEEEEcCCceeee
Q 046394          146 -----ML--------------------CHQGPVSALAFHPNGHLMA-TSGKDCKIKIWDLRKYEVLQ  186 (378)
Q Consensus       146 -----~~--------------------~h~~~v~~~~~sp~g~~l~-t~~~d~~i~iwd~~~~~~~~  186 (378)
                           +.                    .....|-+|+.+.+..+++ |+-..+...+||..+|..+.
T Consensus       250 ~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~  316 (366)
T COG3490         250 NDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVS  316 (366)
T ss_pred             ccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEe
Confidence                 11                    1224466788876444544 44455678899998887644

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=96.42  E-value=0.72  Score=42.13  Aligned_cols=201  Identities=11%  Similarity=0.054  Sum_probs=107.7

Q ss_pred             CceEEEEcCCCCEEEEEeCCCcEEEEeC-----CC---------------------Ce------------------EEee
Q 046394           47 GPYTLDFTSSGRYMAAAGCKGYPYFYNR-----DG---------------------TE------------------LHCS   82 (378)
Q Consensus        47 ~v~~~~~sp~g~~l~~~~~dg~i~iwd~-----~~---------------------~~------------------~~~~   82 (378)
                      .|..+.|+++..-|++|...|.|.||..     .+                     ..                  ...+
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~   82 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL   82 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence            4778899998888999999999888861     11                     00                  0111


Q ss_pred             ccCCCe-eEEEE----EEEEEeCCCeEEEEEcCCCcEEEEEe--c------CCCCeeEEEEc-----CCC---CEEEEEc
Q 046394           83 KEHGEV-LKLQF----LLASINKLGQLRYQNVTMGEIVGNFW--T------GLGRTDVIRVN-----PFN---GVVSLGH  141 (378)
Q Consensus        83 ~~~~~~-~~l~~----~l~s~~~d~~i~iwd~~~~~~~~~~~--~------~~~~v~~~~~s-----~~~---~~l~~~~  141 (378)
                      ....+. ++++.    +++.|..+|.+.|.|++....+..-.  .      ....++++.|+     .|+   -.+++|+
T Consensus        83 ~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGT  162 (395)
T PF08596_consen   83 DAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGT  162 (395)
T ss_dssp             ---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEE
T ss_pred             eccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEe
Confidence            112222 55555    89999999999999998777766522  1      12356677776     233   3788888


Q ss_pred             CCCe---------------------eeecCCCEEEEE-EecC-----------------C---CEEEEEECCCeEEEEEc
Q 046394          142 SGGT---------------------MLCHQGPVSALA-FHPN-----------------G---HLMATSGKDCKIKIWDL  179 (378)
Q Consensus       142 ~d~~---------------------~~~h~~~v~~~~-~sp~-----------------g---~~l~t~~~d~~i~iwd~  179 (378)
                      ..|.                     ...+.++|..+. |+.+                 |   +-++....+..++|+..
T Consensus       163 n~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~  242 (395)
T PF08596_consen  163 NSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKP  242 (395)
T ss_dssp             TTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-T
T ss_pred             CCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeC
Confidence            8887                     223556665554 3221                 1   12344444677999998


Q ss_pred             CCceeeeee-cC--C---------------ceEEEEecCCCccccCCCCCceEEEeecc---CCcceeeeEEcCCCCeEE
Q 046394          180 RKYEVLQTL-PG--H---------------AKTLDFSRKDSGDFSGSHNYNRYMGYSMV---KGYQIGKVSFRPYEDVLG  238 (378)
Q Consensus       180 ~~~~~~~~~-~~--~---------------i~~~~~sp~g~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~sp~g~~l~  238 (378)
                      .+.+..+.. ..  .               ..=+++..+|...++.....+.+.....+   ....+....++++|+.++
T Consensus       243 ~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~Gdi~~  322 (395)
T PF08596_consen  243 PKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNGDIFY  322 (395)
T ss_dssp             T---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TTS-EEE
T ss_pred             CCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECCCCCEEE
Confidence            877665544 11  1               11234455677777777777766665541   123456778889998777


Q ss_pred             EecCCCeEE
Q 046394          239 IGHSMGVSG  247 (378)
Q Consensus       239 ~~~~~g~~~  247 (378)
                      -.+......
T Consensus       323 ~~gpsE~~l  331 (395)
T PF08596_consen  323 WTGPSEIQL  331 (395)
T ss_dssp             E-SSSEEEE
T ss_pred             EeCcccEEE
Confidence            666655433

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.41  E-value=0.46  Score=39.71  Aligned_cols=89  Identities=12%  Similarity=0.067  Sum_probs=64.5

Q ss_pred             CCEEEEEeCCCcEEEEe-CCCCeEEeeccCCCe--eEEEE--EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEc
Q 046394           57 GRYMAAAGCKGYPYFYN-RDGTELHCSKEHGEV--LKLQF--LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVN  131 (378)
Q Consensus        57 g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~--~~l~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s  131 (378)
                      ..+++.|+..+.+.-.| .+|.....--....+  ..+..  +++.|...|.+++.+..+|.....+.....--......
T Consensus        23 kT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~vvgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d  102 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIVVGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCD  102 (354)
T ss_pred             ceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEEECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEc
Confidence            35778888888888888 566665443222222  33434  88899999999999999998777776443333345678


Q ss_pred             CCCCEEEEEcCCCe
Q 046394          132 PFNGVVSLGHSGGT  145 (378)
Q Consensus       132 ~~~~~l~~~~~d~~  145 (378)
                      +++..+..|+.|+.
T Consensus       103 ~~~glIycgshd~~  116 (354)
T KOG4649|consen  103 FDGGLIYCGSHDGN  116 (354)
T ss_pred             CCCceEEEecCCCc
Confidence            99999999999998

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=96.38  E-value=0.32  Score=41.55  Aligned_cols=94  Identities=16%  Similarity=0.098  Sum_probs=51.0

Q ss_pred             CceEEEEcCCCCEEEEEe---CCCcEEEEeCCCCeEEeeccCCCeeEEEE-----EEEEEeCCCeEEEE-EcCCCcEE-E
Q 046394           47 GPYTLDFTSSGRYMAAAG---CKGYPYFYNRDGTELHCSKEHGEVLKLQF-----LLASINKLGQLRYQ-NVTMGEIV-G  116 (378)
Q Consensus        47 ~v~~~~~sp~g~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~l~~-----~l~s~~~d~~i~iw-d~~~~~~~-~  116 (378)
                      .+.+.++|++|..+|...   ....++++...+.....+.+. ......|     +.+....+....++ +..++... .
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g~-~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~  103 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTGG-SLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPV  103 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccCC-ccccccccCCCCEEEEEcCCCceEEEEecCCCcceeE
Confidence            688999999999777655   333566665544443333322 2244555     33333344445555 33333321 1


Q ss_pred             EEecC-C-CCeeEEEEcCCCCEEEEEc
Q 046394          117 NFWTG-L-GRTDVIRVNPFNGVVSLGH  141 (378)
Q Consensus       117 ~~~~~-~-~~v~~~~~s~~~~~l~~~~  141 (378)
                      .+... . ..|..+.+||||..++...
T Consensus       104 ~v~~~~~~~~I~~l~vSpDG~RvA~v~  130 (253)
T PF10647_consen  104 EVDWPGLRGRITALRVSPDGTRVAVVV  130 (253)
T ss_pred             EecccccCCceEEEEECCCCcEEEEEE
Confidence            22211 1 2788888888887666544

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=96.38  E-value=0.0023  Score=59.21  Aligned_cols=155  Identities=15%  Similarity=0.134  Sum_probs=99.6

Q ss_pred             CCceEEEEcCCCC--EEEEEeCCCcEEEEeCCCC--e-EEeeccCCCe-eEEEE------EEEEEe----CCCeEEEEEc
Q 046394           46 LGPYTLDFTSSGR--YMAAAGCKGYPYFYNRDGT--E-LHCSKEHGEV-LKLQF------LLASIN----KLGQLRYQNV  109 (378)
Q Consensus        46 ~~v~~~~~sp~g~--~l~~~~~dg~i~iwd~~~~--~-~~~~~~~~~~-~~l~~------~l~s~~----~d~~i~iwd~  109 (378)
                      ..+.|++++-+.+  .+++|..+|.|-+-.....  . .....++... ++++|      .||.|-    .|..+.|||+
T Consensus        57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi  136 (783)
T KOG1008|consen   57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI  136 (783)
T ss_pred             CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence            4567887765443  6788888999998873221  1 2233445555 88999      455542    3678999999


Q ss_pred             CCC--cEEE--EEec-CCCCeeEEEEcCCCCEEEEEcCCCe-------------eeecCCCEEEEEEec-CCCEEEEEEC
Q 046394          110 TMG--EIVG--NFWT-GLGRTDVIRVNPFNGVVSLGHSGGT-------------MLCHQGPVSALAFHP-NGHLMATSGK  170 (378)
Q Consensus       110 ~~~--~~~~--~~~~-~~~~v~~~~~s~~~~~l~~~~~d~~-------------~~~h~~~v~~~~~sp-~g~~l~t~~~  170 (378)
                      .++  .+..  .|.. .....++++|..+.+++.+|.....             ..-....+..+.++| .++|+++-. 
T Consensus       137 ~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~-  215 (783)
T KOG1008|consen  137 NSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNS-  215 (783)
T ss_pred             ccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceeccc-
Confidence            876  2211  2222 3345668899988888888877654             111123456678888 788888877 


Q ss_pred             CCeEEEEE-cCCce-eeeee-------cCCceEEEEecCC
Q 046394          171 DCKIKIWD-LRKYE-VLQTL-------PGHAKTLDFSRKD  201 (378)
Q Consensus       171 d~~i~iwd-~~~~~-~~~~~-------~~~i~~~~~sp~g  201 (378)
                      ||.|.+|| .++-+ ++..+       ...+..++|+|..
T Consensus       216 dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtr  255 (783)
T KOG1008|consen  216 DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTR  255 (783)
T ss_pred             cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCC
Confidence            99999999 44432 33333       1347888998854

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=96.26  E-value=0.16  Score=43.43  Aligned_cols=120  Identities=13%  Similarity=0.104  Sum_probs=71.5

Q ss_pred             CeeEEEEcCCCCEEEEEc--CCCe------------eeecCCCEEEEEEecCCCEEEEEECCCeEEEEE-cCCceeee-e
Q 046394          124 RTDVIRVNPFNGVVSLGH--SGGT------------MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWD-LRKYEVLQ-T  187 (378)
Q Consensus       124 ~v~~~~~s~~~~~l~~~~--~d~~------------~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd-~~~~~~~~-~  187 (378)
                      .+...+++++++.++...  .++.            ...-...++...|+++|...+....+...+++- ..++.... .
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~  104 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVE  104 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccCCccccccccCCCCEEEEEcCCCceEEEEecCCCcceeEE
Confidence            577888999888766655  3333            111223667788999987666666666666663 33433322 2


Q ss_pred             e----c-CCceEEEEecCCCccccCC----------------CCC------ceEEEeeccCCcceeeeEEcCCCCeEEEe
Q 046394          188 L----P-GHAKTLDFSRKDSGDFSGS----------------HNY------NRYMGYSMVKGYQIGKVSFRPYEDVLGIG  240 (378)
Q Consensus       188 ~----~-~~i~~~~~sp~g~~~~~~~----------------~~~------~~~~~~~~~~~~~v~~~~~sp~g~~l~~~  240 (378)
                      +    . ..|.++.+||||.....-.                ...      .++..... ....+.++.|.+++.+++.+
T Consensus       105 v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~-~~~~v~~v~W~~~~~L~V~~  183 (253)
T PF10647_consen  105 VDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPP-LLSDVTDVAWSDDSTLVVLG  183 (253)
T ss_pred             ecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEeccc-ccCcceeeeecCCCEEEEEe
Confidence            2    1 2799999999998621110                111      11111111 24578899999999887776


Q ss_pred             cCCC
Q 046394          241 HSMG  244 (378)
Q Consensus       241 ~~~g  244 (378)
                      ...+
T Consensus       184 ~~~~  187 (253)
T PF10647_consen  184 RSAG  187 (253)
T ss_pred             CCCC
Confidence            6554

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=96.21  E-value=0.77  Score=40.33  Aligned_cols=129  Identities=14%  Similarity=0.072  Sum_probs=77.3

Q ss_pred             EEEEcCCCCEEEEE-eCCCcEEEEeCCCCeEEeeccCCCe-eEEEE----EEEEEeCCCeEEEEEcCCCcEEEEEec---
Q 046394           50 TLDFTSSGRYMAAA-GCKGYPYFYNRDGTELHCSKEHGEV-LKLQF----LLASINKLGQLRYQNVTMGEIVGNFWT---  120 (378)
Q Consensus        50 ~~~~sp~g~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~-~~l~~----~l~s~~~d~~i~iwd~~~~~~~~~~~~---  120 (378)
                      +..|.++...|+.+ -..+.|.-|+........+...... ..+.+    .|+++..  -+.+++..++..+..+..   
T Consensus        29 gP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~~  106 (307)
T COG3386          29 GPVWDPDRGALLWVDILGGRIHRLDPETGKKRVFPSPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEPED  106 (307)
T ss_pred             CccCcCCCCEEEEEeCCCCeEEEecCCcCceEEEECCCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEeccccC
Confidence            44677877755444 4477888888765555555555554 33333    5555543  356677666655333321   


Q ss_pred             --CCCCeeEEEEcCCCCEEEEEcC---CCe---------------------eeecCCCEEEEEEecCCCEEEEEEC-CCe
Q 046394          121 --GLGRTDVIRVNPFNGVVSLGHS---GGT---------------------MLCHQGPVSALAFHPNGHLMATSGK-DCK  173 (378)
Q Consensus       121 --~~~~v~~~~~s~~~~~l~~~~~---d~~---------------------~~~h~~~v~~~~~sp~g~~l~t~~~-d~~  173 (378)
                        .....+.+...|+|.+.++...   .+.                     +..+-..-+.|+||||++.|..+.. .+.
T Consensus       107 ~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~  186 (307)
T COG3386         107 GLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANR  186 (307)
T ss_pred             CCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCe
Confidence              1245678889999887776555   111                     1112223457999999987766654 477


Q ss_pred             EEEEEcC
Q 046394          174 IKIWDLR  180 (378)
Q Consensus       174 i~iwd~~  180 (378)
                      |.-|++.
T Consensus       187 i~r~~~d  193 (307)
T COG3386         187 IHRYDLD  193 (307)
T ss_pred             EEEEecC
Confidence            8888775

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.11  E-value=0.055  Score=53.57  Aligned_cols=89  Identities=13%  Similarity=0.100  Sum_probs=64.4

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCeE---EeeccCCCeeEEEE-----EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEE
Q 046394           57 GRYMAAAGCKGYPYFYNRDGTEL---HCSKEHGEVLKLQF-----LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVI  128 (378)
Q Consensus        57 g~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~~l~~-----~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~  128 (378)
                      +..++.|++.|.|...|.+|..-   .......++++++|     .++.|-.+|.|.+||+.++..++.+..+..+...+
T Consensus        99 ~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~v  178 (1206)
T KOG2079|consen   99 VVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGV  178 (1206)
T ss_pred             eeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceE
Confidence            55789999999999999776532   11222233499999     77788889999999999999988887766555443


Q ss_pred             ---EEcCCCCEEEEEcCCCe
Q 046394          129 ---RVNPFNGVVSLGHSGGT  145 (378)
Q Consensus       129 ---~~s~~~~~l~~~~~d~~  145 (378)
                         .+..++..++++...|.
T Consensus       179 i~v~~t~~nS~llt~D~~Gs  198 (1206)
T KOG2079|consen  179 IFVGRTSQNSKLLTSDTGGS  198 (1206)
T ss_pred             EEEEEeCCCcEEEEccCCCc
Confidence               45556667777766664

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.08  E-value=0.76  Score=39.05  Aligned_cols=109  Identities=11%  Similarity=0.067  Sum_probs=70.0

Q ss_pred             EEEEeCCCe-EEEEEcCCCcEEEEEecCCCC--eeEEEEcCCCCEEEEEcCCCe--------------------eeecCC
Q 046394           95 LASINKLGQ-LRYQNVTMGEIVGNFWTGLGR--TDVIRVNPFNGVVSLGHSGGT--------------------MLCHQG  151 (378)
Q Consensus        95 l~s~~~d~~-i~iwd~~~~~~~~~~~~~~~~--v~~~~~s~~~~~l~~~~~d~~--------------------~~~h~~  151 (378)
                      ++.+-.-|+ ..++|....+...++....+.  .-.=.|||||.+|+..-.|-.                    +..|.-
T Consensus        83 vafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~Gi  162 (366)
T COG3490          83 VAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGI  162 (366)
T ss_pred             EEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCc
Confidence            333444444 457888877766555443322  223579999999887655433                    455555


Q ss_pred             CEEEEEEecCCCEEEEEEC------C------------CeEEEEEcCCceeeeee-------cCCceEEEEecCCCc
Q 046394          152 PVSALAFHPNGHLMATSGK------D------------CKIKIWDLRKYEVLQTL-------PGHAKTLDFSRKDSG  203 (378)
Q Consensus       152 ~v~~~~~sp~g~~l~t~~~------d------------~~i~iwd~~~~~~~~~~-------~~~i~~~~~sp~g~~  203 (378)
                      ....+.|.+||+.++.+..      |            -++.+.|..+|.++...       +-++..+...+||..
T Consensus       163 GpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtv  239 (366)
T COG3490         163 GPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTV  239 (366)
T ss_pred             CcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcE
Confidence            6678999999999887643      1            14666676777776544       246777888888763

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=96.07  E-value=0.024  Score=46.10  Aligned_cols=62  Identities=18%  Similarity=0.254  Sum_probs=36.2

Q ss_pred             CCEEEEEeCCCcEEEEeCC--CCeEEeeccCCCeeEEEE-------EEEEEeCCCeEEEEEcCCCcEEEEE
Q 046394           57 GRYMAAAGCKGYPYFYNRD--GTELHCSKEHGEVLKLQF-------LLASINKLGQLRYQNVTMGEIVGNF  118 (378)
Q Consensus        57 g~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~l~~-------~l~s~~~d~~i~iwd~~~~~~~~~~  118 (378)
                      +.-+++|+.+|.|++|+..  |.....+........+-+       +..+++.||.|+.|++.-.+.+...
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~  140 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYV  140 (238)
T ss_pred             CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeee
Confidence            4568889999999999854  221111111111111111       5677788899999888665554443

>PRK13616 lipoprotein LpqB; Provisional

Probab=96.06  E-value=0.14  Score=49.27  Aligned_cols=81  Identities=10%  Similarity=0.074  Sum_probs=50.4

Q ss_pred             CCeeEEEEcCCCCEEEEEc------CCCe---ee----e------cCCCEEEEEEecCCCEEEEEECC------------
Q 046394          123 GRTDVIRVNPFNGVVSLGH------SGGT---ML----C------HQGPVSALAFHPNGHLMATSGKD------------  171 (378)
Q Consensus       123 ~~v~~~~~s~~~~~l~~~~------~d~~---~~----~------h~~~v~~~~~sp~g~~l~t~~~d------------  171 (378)
                      ..+...+++|+|..++...      .+..   ..    +      .....+.-.|+|+|..|++.+..            
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~  429 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEGHSLTRPSWSLDADAVWVVVDGNTVVRVIRDPAT  429 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecCCCCCCceECCCCCceEEEecCcceEEEeccCCC
Confidence            4577889999998776654      1222   10    0      11236778999998888777533            


Q ss_pred             CeEEEEEcCCceeeeeecCCceEEEEecCCCc
Q 046394          172 CKIKIWDLRKYEVLQTLPGHAKTLDFSRKDSG  203 (378)
Q Consensus       172 ~~i~iwd~~~~~~~~~~~~~i~~~~~sp~g~~  203 (378)
                      +.+.+.++..+.....+...|..+.|||||..
T Consensus       430 gql~~~~vd~ge~~~~~~g~Issl~wSpDG~R  461 (591)
T PRK13616        430 GQLARTPVDASAVASRVPGPISELQLSRDGVR  461 (591)
T ss_pred             ceEEEEeccCchhhhccCCCcCeEEECCCCCE
Confidence            23333344443332233467999999999996

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.00  E-value=0.86  Score=38.95  Aligned_cols=100  Identities=9%  Similarity=0.038  Sum_probs=65.3

Q ss_pred             cCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeec--cCCCeeEEEE-----EEEEEeCCCeEEEEEcCCCcE
Q 046394           43 LPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSK--EHGEVLKLQF-----LLASINKLGQLRYQNVTMGEI  114 (378)
Q Consensus        43 ~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~--~~~~~~~l~~-----~l~s~~~d~~i~iwd~~~~~~  114 (378)
                      +-...+.++.|+|+.+.|++....+.-.|+= .+|..+.++.  +..++-.+.|     +.++--.+..+.++.+.....
T Consensus        83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~  162 (316)
T COG3204          83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTT  162 (316)
T ss_pred             cccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCcc
Confidence            3345689999999999888877777666654 8888887754  4444566667     444444577777776654422


Q ss_pred             EE-----EEe-----cCCCCeeEEEEcCCCCEEEEEcC
Q 046394          115 VG-----NFW-----TGLGRTDVIRVNPFNGVVSLGHS  142 (378)
Q Consensus       115 ~~-----~~~-----~~~~~v~~~~~s~~~~~l~~~~~  142 (378)
                      +.     .++     ..+.....++|+|....|+++-.
T Consensus       163 ~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKE  200 (316)
T COG3204         163 VISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKE  200 (316)
T ss_pred             EEeccceEEeccccCCCCcCceeeecCCCCceEEEEEc
Confidence            11     111     12456778999998877666543

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=95.99  E-value=1.2  Score=40.65  Aligned_cols=157  Identities=12%  Similarity=0.101  Sum_probs=100.9

Q ss_pred             CCceEEEEcCCCCEEEE-EeCCCcEEEEeC-CCCeEEeeccCCCeeEEEE------EEEEEe--CCCeEEEEEcCCCcEE
Q 046394           46 LGPYTLDFTSSGRYMAA-AGCKGYPYFYNR-DGTELHCSKEHGEVLKLQF------LLASIN--KLGQLRYQNVTMGEIV  115 (378)
Q Consensus        46 ~~v~~~~~sp~g~~l~~-~~~dg~i~iwd~-~~~~~~~~~~~~~~~~l~~------~l~s~~--~d~~i~iwd~~~~~~~  115 (378)
                      ....++++++.+..+++ ...++.|.+.|. .....+...-...+..+++      ..++-.  .++++.+.|..+...+
T Consensus        74 ~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~  153 (381)
T COG3391          74 VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVT  153 (381)
T ss_pred             ccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEE
Confidence            34568889998885444 444688999993 3344444333334455666      333333  4789999999988888


Q ss_pred             EEEecCCCCeeEEEEcCCCCEEEEEcC-CCe----------ee-ec-------CCCEEEEEEecCCCEEEEEE-CC--Ce
Q 046394          116 GNFWTGLGRTDVIRVNPFNGVVSLGHS-GGT----------ML-CH-------QGPVSALAFHPNGHLMATSG-KD--CK  173 (378)
Q Consensus       116 ~~~~~~~~~v~~~~~s~~~~~l~~~~~-d~~----------~~-~h-------~~~v~~~~~sp~g~~l~t~~-~d--~~  173 (378)
                      ........+ ..++++|+|..+++... ++.          +. .+       ......+.++|+|.++.... .+  +.
T Consensus       154 ~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~  232 (381)
T COG3391         154 ATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNN  232 (381)
T ss_pred             EEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCce
Confidence            775544444 88999999997776663 333          11 11       11235678899998655443 33  58


Q ss_pred             EEEEEcCCceeeee-e--cC-CceEEEEecCCCc
Q 046394          174 IKIWDLRKYEVLQT-L--PG-HAKTLDFSRKDSG  203 (378)
Q Consensus       174 i~iwd~~~~~~~~~-~--~~-~i~~~~~sp~g~~  203 (378)
                      +...|..++..... +  .. ....+.++|+|.+
T Consensus       233 v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~  266 (381)
T COG3391         233 VLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKA  266 (381)
T ss_pred             EEEEeCCCceEEEeccccccCCCCceeECCCCCE
Confidence            99999988777665 2  22 4567788888775

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=95.93  E-value=0.15  Score=50.02  Aligned_cols=33  Identities=12%  Similarity=0.344  Sum_probs=28.1

Q ss_pred             cCCCEEEEEEecC---CCEEEEEECCCeEEEEEcCC
Q 046394          149 HQGPVSALAFHPN---GHLMATSGKDCKIKIWDLRK  181 (378)
Q Consensus       149 h~~~v~~~~~sp~---g~~l~t~~~d~~i~iwd~~~  181 (378)
                      +...|..+.|+|.   +..|+.-..|+++|+||+..
T Consensus       145 ~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~  180 (717)
T PF10168_consen  145 SSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISD  180 (717)
T ss_pred             CCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCC
Confidence            3457889999995   57899999999999999975

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.83  E-value=0.11  Score=51.59  Aligned_cols=63  Identities=17%  Similarity=0.230  Sum_probs=47.4

Q ss_pred             CCCceEEEEcCCCCEEEEEeCCCcEEEEeC-CCCeEEeeccCCCe-eEEEE--------EEEEEeCCCeEEEEEc
Q 046394           45 ELGPYTLDFTSSGRYMAAAGCKGYPYFYNR-DGTELHCSKEHGEV-LKLQF--------LLASINKLGQLRYQNV  109 (378)
Q Consensus        45 ~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~-~~l~~--------~l~s~~~d~~i~iwd~  109 (378)
                      .++|.+++|+.+|+.++.|-.+|.|.+||. .+..++.+..|..+ +++-+        .++++...|.  +|.+
T Consensus       130 ~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  130 QGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             CCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence            478999999999999999999999999995 45777777777665 44433        4666655554  4443

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=95.71  E-value=0.16  Score=46.39  Aligned_cols=125  Identities=8%  Similarity=0.044  Sum_probs=76.0

Q ss_pred             ceeeeeecccceeeEEeecCCCCceEEEEcCCCC-------EEEEEeCCCcEEEEe--CCCCeEEeeccC-----CCeeE
Q 046394           25 AIAREVDILSSRNQYDIMLPELGPYTLDFTSSGR-------YMAAAGCKGYPYFYN--RDGTELHCSKEH-----GEVLK   90 (378)
Q Consensus        25 ~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~-------~l~~~~~dg~i~iwd--~~~~~~~~~~~~-----~~~~~   90 (378)
                      ..++-.|+.-|+.+-....|...  -+.|.|+..       .-++|-++..|.-.|  ..|..+......     ...++
T Consensus       490 ~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esKdY~tKn~Fss  567 (776)
T COG5167         490 DKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESKDYKTKNKFSS  567 (776)
T ss_pred             ccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeehhccccccccc
Confidence            34555677778888777777444  566776532       234565666777777  456555443222     11222


Q ss_pred             EEE----EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCeeeecCCCEEEEEEecCCCEEE
Q 046394           91 LQF----LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGTMLCHQGPVSALAFHPNGHLMA  166 (378)
Q Consensus        91 l~~----~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~~~~h~~~v~~~~~sp~g~~l~  166 (378)
                      ..-    ++|.+|.-|-|++||--.-.....++                            +....|..+..+.+|.+++
T Consensus       568 ~~tTesGyIa~as~kGDirLyDRig~rAKtalP----------------------------~lG~aIk~idvta~Gk~il  619 (776)
T COG5167         568 GMTTESGYIAAASRKGDIRLYDRIGKRAKTALP----------------------------GLGDAIKHIDVTANGKHIL  619 (776)
T ss_pred             cccccCceEEEecCCCceeeehhhcchhhhcCc----------------------------ccccceeeeEeecCCcEEE
Confidence            222    99999999999999953222222222                            4455677788888888766


Q ss_pred             EEECCCeEEEEEcC
Q 046394          167 TSGKDCKIKIWDLR  180 (378)
Q Consensus       167 t~~~d~~i~iwd~~  180 (378)
                      +.+ ...|.+-|++
T Consensus       620 aTC-k~yllL~d~~  632 (776)
T COG5167         620 ATC-KNYLLLTDVP  632 (776)
T ss_pred             Eee-cceEEEEecc
Confidence            554 4457777765

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=95.65  E-value=1.4  Score=38.62  Aligned_cols=132  Identities=15%  Similarity=0.132  Sum_probs=66.3

Q ss_pred             CCCceEEEEcCCCCEEEEEeCCCcEEEEeCCC--CeEEeeccCCCeeEEEE----EEEEEeCCCeEEEEEc-CCCcEEEE
Q 046394           45 ELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDG--TELHCSKEHGEVLKLQF----LLASINKLGQLRYQNV-TMGEIVGN  117 (378)
Q Consensus        45 ~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~~l~~----~l~s~~~d~~i~iwd~-~~~~~~~~  117 (378)
                      .+.+..+..++||+++++++.-....-||.-.  -..+.......+..|.|    .+......|.|+.=+. ........
T Consensus       144 ~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~~~~w~~  223 (302)
T PF14870_consen  144 SGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLARGGQIQFSDDPDDGETWSE  223 (302)
T ss_dssp             ---EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TTEEEEE--
T ss_pred             cceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEeCCcEEEEccCCCCcccccc
Confidence            35678888999999988886544445677432  33344444445588888    3333447788887762 12222111


Q ss_pred             --Eec--CCCCeeEEEEcCCCCEEEEEcCCCe---------------eeecCCCEEEEEEecCCCEEEEEECCCeEEEE
Q 046394          118 --FWT--GLGRTDVIRVNPFNGVVSLGHSGGT---------------MLCHQGPVSALAFHPNGHLMATSGKDCKIKIW  177 (378)
Q Consensus       118 --~~~--~~~~v~~~~~s~~~~~l~~~~~d~~---------------~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iw  177 (378)
                        ...  ..-.+..++|.+++...++|+....               ...-...++.|.|.++.+ -...+.+|.|.-|
T Consensus       224 ~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~-gf~lG~~G~ll~~  301 (302)
T PF14870_consen  224 PIIPIKTNGYGILDLAYRPPNEIWAVGGSGTLLVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDK-GFVLGQDGVLLRY  301 (302)
T ss_dssp             -B-TTSS--S-EEEEEESSSS-EEEEESTT-EEEESSTTSS-EE-GGGTTSSS---EEEEEETTE-EEEE-STTEEEEE
T ss_pred             ccCCcccCceeeEEEEecCCCCEEEEeCCccEEEeCCCCccceECccccCCCCceEEEEEcCCCc-eEEECCCcEEEEe
Confidence              111  1223688899999888877766544               111234577888876544 4444567766544

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=95.53  E-value=1.1  Score=43.36  Aligned_cols=88  Identities=10%  Similarity=0.038  Sum_probs=47.5

Q ss_pred             ceeeeeecccceeeEEeecCC-CCceEEEEcCCCCEEEEEeCC-C-----cEEEEeCCCCeEEeecc---CCCeeEEEE-
Q 046394           25 AIAREVDILSSRNQYDIMLPE-LGPYTLDFTSSGRYMAAAGCK-G-----YPYFYNRDGTELHCSKE---HGEVLKLQF-   93 (378)
Q Consensus        25 ~~i~~~d~~~~~~~~~l~~~~-~~v~~~~~sp~g~~l~~~~~d-g-----~i~iwd~~~~~~~~~~~---~~~~~~l~~-   93 (378)
                      ..+..+|..++.......... ....++++. ++...++||.| |     ++..||.....-..+..   .....+++. 
T Consensus       301 ~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l  379 (571)
T KOG4441|consen  301 RSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVL  379 (571)
T ss_pred             ceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEE
Confidence            567788888775443322221 223345544 35677888888 3     67778854443222211   111122222 


Q ss_pred             ---EEEEEeCCCe-----EEEEEcCCCc
Q 046394           94 ---LLASINKLGQ-----LRYQNVTMGE  113 (378)
Q Consensus        94 ---~l~s~~~d~~-----i~iwd~~~~~  113 (378)
                         +.|.||.||.     +-.||..+.+
T Consensus       380 ~g~iYavGG~dg~~~l~svE~YDp~~~~  407 (571)
T KOG4441|consen  380 DGKLYAVGGFDGEKSLNSVECYDPVTNK  407 (571)
T ss_pred             CCEEEEEeccccccccccEEEecCCCCc
Confidence               7888888864     5566665443

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=95.41  E-value=0.071  Score=30.96  Aligned_cols=31  Identities=29%  Similarity=0.477  Sum_probs=25.9

Q ss_pred             CCEEEEEEecCC---CEEEEEECCCeEEEEEcCC
Q 046394          151 GPVSALAFHPNG---HLMATSGKDCKIKIWDLRK  181 (378)
Q Consensus       151 ~~v~~~~~sp~g---~~l~t~~~d~~i~iwd~~~  181 (378)
                      +.|.++.|||++   .+|+.+-.-+.|.|+|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            468899999843   4888888889999999995

It contains a characteristic DLL sequence motif.

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=95.31  E-value=0.84  Score=42.79  Aligned_cols=128  Identities=12%  Similarity=0.136  Sum_probs=71.9

Q ss_pred             CceEEEEcCCCCE-EEEEe--CCCcEEEEeCCCCeEEeeccCCCeeEEEE---------EEEEEeCCCeEEEEEcCC---
Q 046394           47 GPYTLDFTSSGRY-MAAAG--CKGYPYFYNRDGTELHCSKEHGEVLKLQF---------LLASINKLGQLRYQNVTM---  111 (378)
Q Consensus        47 ~v~~~~~sp~g~~-l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~l~~---------~l~s~~~d~~i~iwd~~~---  111 (378)
                      ++.+++|. ||+. +++.-  .+|.+.+=|     -..+.....+..+.|         .+++......|.+|.+..   
T Consensus        21 PvhGlaWT-DGkqVvLT~L~l~~gE~kfGd-----s~viGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~   94 (671)
T PF15390_consen   21 PVHGLAWT-DGKQVVLTDLQLHNGEPKFGD-----SKVIGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTT   94 (671)
T ss_pred             cccceEec-CCCEEEEEeeeeeCCccccCC-----ccEeeccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCcc
Confidence            67788986 4554 44432  133333322     112222233455666         344455667899998752   


Q ss_pred             --CcEEEEEecC---C--CCeeEEEEcCCCCEEEEEcCCCe---------------eeecCCCEEEEEEecCCCEEEEEE
Q 046394          112 --GEIVGNFWTG---L--GRTDVIRVNPFNGVVSLGHSGGT---------------MLCHQGPVSALAFHPNGHLMATSG  169 (378)
Q Consensus       112 --~~~~~~~~~~---~--~~v~~~~~s~~~~~l~~~~~d~~---------------~~~h~~~v~~~~~sp~g~~l~t~~  169 (378)
                        .+.+..-..+   .  --...+.|+|....|++-+....               -....+.|.|.+|.+||+.|+.+-
T Consensus        95 e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAv  174 (671)
T PF15390_consen   95 ERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAV  174 (671)
T ss_pred             ccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEe
Confidence              2222221111   1  12345789998888776555444               123457799999999999877654


Q ss_pred             CCC-eEEEEEcC
Q 046394          170 KDC-KIKIWDLR  180 (378)
Q Consensus       170 ~d~-~i~iwd~~  180 (378)
                      ... .-+|||-.
T Consensus       175 GSsLHSyiWd~~  186 (671)
T PF15390_consen  175 GSSLHSYIWDSA  186 (671)
T ss_pred             CCeEEEEEecCc
Confidence            332 45688753

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=95.26  E-value=2.8  Score=40.09  Aligned_cols=92  Identities=10%  Similarity=0.058  Sum_probs=58.0

Q ss_pred             cceeeeeecccceeeEEeecCC-------------------------------CCce-EEEEcCCCCEEEEEeCC-----
Q 046394           24 EAIAREVDILSSRNQYDIMLPE-------------------------------LGPY-TLDFTSSGRYMAAAGCK-----   66 (378)
Q Consensus        24 ~~~i~~~d~~~~~~~~~l~~~~-------------------------------~~v~-~~~~sp~g~~l~~~~~d-----   66 (378)
                      ++.|..+|..+++.+..+..-.                               ..+. .+++.|...+|+.+..+     
T Consensus       180 ~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~  259 (527)
T TIGR03075       180 RGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWN  259 (527)
T ss_pred             CcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCC
Confidence            5789999999999887754311                               1122 45777766677666533     


Q ss_pred             C-----------cEEEEe-CCCCeEEeeccCC-Ce---------eEEE--E------EEEEEeCCCeEEEEEcCCCcEE
Q 046394           67 G-----------YPYFYN-RDGTELHCSKEHG-EV---------LKLQ--F------LLASINKLGQLRYQNVTMGEIV  115 (378)
Q Consensus        67 g-----------~i~iwd-~~~~~~~~~~~~~-~~---------~~l~--~------~l~s~~~d~~i~iwd~~~~~~~  115 (378)
                      +           .|.-.| .+|+....++... +.         .-+.  .      .++.+..+|.+++.|-.+|+.+
T Consensus       260 ~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i  338 (527)
T TIGR03075       260 SHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL  338 (527)
T ss_pred             CCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence            2           444455 3566665554322 11         1111  1      6778899999999999999886

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=95.14  E-value=1.8  Score=36.76  Aligned_cols=152  Identities=11%  Similarity=0.070  Sum_probs=84.2

Q ss_pred             eeEEEE------EEEEEeCCCeEEEEEcCCCcEEEEEecC-CCCeeEEEEcCCCCEEEEEcCCCe---------------
Q 046394           88 VLKLQF------LLASINKLGQLRYQNVTMGEIVGNFWTG-LGRTDVIRVNPFNGVVSLGHSGGT---------------  145 (378)
Q Consensus        88 ~~~l~~------~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~d~~---------------  145 (378)
                      ++.+.|      ++++....+.|..++. +|+.+..+... .+....|++..++.++++.-.++.               
T Consensus        24 ~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~  102 (248)
T PF06977_consen   24 LSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDR  102 (248)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--E
T ss_pred             ccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccch
Confidence            588888      7888888899988897 58888887654 366888999888877766544444               


Q ss_pred             ----------eeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCC---ceeeeee-----------cCCceEEEEecCC
Q 046394          146 ----------MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRK---YEVLQTL-----------PGHAKTLDFSRKD  201 (378)
Q Consensus       146 ----------~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~---~~~~~~~-----------~~~i~~~~~sp~g  201 (378)
                                ...++..+-.++|+|.++.|+.+-...-..||.+..   ...+...           -..+.+++++|..
T Consensus       103 ~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t  182 (248)
T PF06977_consen  103 ADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRT  182 (248)
T ss_dssp             EEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTT
T ss_pred             hhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCC
Confidence                      112445688999999877777777666666776653   2222111           2356888888865


Q ss_pred             Cc-----------cccCCCCCceEEEeeccC--------CcceeeeEEcCCCCeEEEec
Q 046394          202 SG-----------DFSGSHNYNRYMGYSMVK--------GYQIGKVSFRPYEDVLGIGH  241 (378)
Q Consensus       202 ~~-----------~~~~~~~~~~~~~~~~~~--------~~~v~~~~~sp~g~~l~~~~  241 (378)
                      ..           ...+ ..+.++..+....        -...-.|+|.++|.+.+++-
T Consensus       183 ~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsE  240 (248)
T PF06977_consen  183 GHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSE  240 (248)
T ss_dssp             TEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEET
T ss_pred             CeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcC
Confidence            42           1112 2333433333211        12456788888886555543

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=94.95  E-value=2.2  Score=36.85  Aligned_cols=161  Identities=12%  Similarity=0.035  Sum_probs=87.6

Q ss_pred             ccceeeeeecccceeeEEe-------------e-cCCCCceEEE--EcCCC-CEEEEEeCCCcEEEEeCCC------CeE
Q 046394           23 QEAIAREVDILSSRNQYDI-------------M-LPELGPYTLD--FTSSG-RYMAAAGCKGYPYFYNRDG------TEL   79 (378)
Q Consensus        23 ~~~~i~~~d~~~~~~~~~l-------------~-~~~~~v~~~~--~sp~g-~~l~~~~~dg~i~iwd~~~------~~~   79 (378)
                      .++.+.++++.........             . ....++...+  -.+.+ ..|+++ ....|.+|....      ...
T Consensus        54 sd~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va-~kk~i~i~~~~~~~~~f~~~~  132 (275)
T PF00780_consen   54 SDGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVA-VKKKILIYEWNDPRNSFSKLL  132 (275)
T ss_pred             cCCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEE-ECCEEEEEEEECCccccccee
Confidence            3588888888766554411             0 1123344444  11233 345544 445888887321      345


Q ss_pred             EeeccCCCeeEEEE---EEEEEeCCCeEEEEEcCCCcEEEEEecCCC-----------CeeEEEEcCCCCEEEEEcCCCe
Q 046394           80 HCSKEHGEVLKLQF---LLASINKLGQLRYQNVTMGEIVGNFWTGLG-----------RTDVIRVNPFNGVVSLGHSGGT  145 (378)
Q Consensus        80 ~~~~~~~~~~~l~~---~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-----------~v~~~~~s~~~~~l~~~~~d~~  145 (378)
                      ..+.-...+.++.|   .++.|.. ....+.|+.++.....+.....           ....+.--+++.+|++-..-|.
T Consensus       133 ke~~lp~~~~~i~~~~~~i~v~~~-~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~~~~~g~  211 (275)
T PF00780_consen  133 KEISLPDPPSSIAFLGNKICVGTS-KGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLCYDNIGV  211 (275)
T ss_pred             EEEEcCCCcEEEEEeCCEEEEEeC-CceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCCceEEEEecceEE
Confidence            56666666688888   5666554 4578899987766544422111           1222323334556655443333


Q ss_pred             eeecC------------CCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee
Q 046394          146 MLCHQ------------GPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL  188 (378)
Q Consensus       146 ~~~h~------------~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~  188 (378)
                      +....            ..+.++++.  ..||+..+. +.|-||++.++++++++
T Consensus       212 fv~~~G~~~r~~~i~W~~~p~~~~~~--~pyli~~~~-~~iEV~~~~~~~lvQ~i  263 (275)
T PF00780_consen  212 FVNKNGEPSRKSTIQWSSAPQSVAYS--SPYLIAFSS-NSIEVRSLETGELVQTI  263 (275)
T ss_pred             EEcCCCCcCcccEEEcCCchhEEEEE--CCEEEEECC-CEEEEEECcCCcEEEEE
Confidence            22211            123344443  336666554 55999999999988887

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=94.89  E-value=2.6  Score=37.44  Aligned_cols=98  Identities=18%  Similarity=0.162  Sum_probs=50.4

Q ss_pred             ecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCce-eeeee--cC--CceEEEEecCCCcc------------ccCCCC
Q 046394          148 CHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYE-VLQTL--PG--HAKTLDFSRKDSGD------------FSGSHN  210 (378)
Q Consensus       148 ~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~-~~~~~--~~--~i~~~~~sp~g~~~------------~~~~~~  210 (378)
                      ...++|++++-- +| +|+.+. ++.|.+|++...+ ....-  +.  .+.++...  +.+.            -|+...
T Consensus        86 ~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~  160 (321)
T PF03178_consen   86 EVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEEN  160 (321)
T ss_dssp             EESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTT
T ss_pred             eecCcceEhhhh-CC-EEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEEccC
Confidence            446778887665 34 344433 4778888887766 43322  23  33444333  3221            111111


Q ss_pred             CceEEEeeccCCcceeeeEEcCCCCeEEEecCCCeEEEEE
Q 046394          211 YNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILI  250 (378)
Q Consensus       211 ~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~  250 (378)
                      ......-+......++++.|-++++.+++++.+|.+.++-
T Consensus       161 ~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~  200 (321)
T PF03178_consen  161 NKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLR  200 (321)
T ss_dssp             E-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEE
T ss_pred             CEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEE
Confidence            1111111111345588888887777888888888766554

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=94.88  E-value=2.1  Score=36.35  Aligned_cols=101  Identities=15%  Similarity=0.203  Sum_probs=62.8

Q ss_pred             eeeEEE-eccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeC-CCCeEEeeccCC--C----
Q 046394           16 EKTWRI-KQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNR-DGTELHCSKEHG--E----   87 (378)
Q Consensus        16 ~~~~~~-~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~--~----   87 (378)
                      ++.|.+ |..+..-+||..+.+.+.++... +.-+.++  .||..|+.+..+..++.+|. +-.....+.-..  .    
T Consensus       100 d~l~qLTWk~~~~f~yd~~tl~~~~~~~y~-~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~  176 (264)
T PF05096_consen  100 DKLYQLTWKEGTGFVYDPNTLKKIGTFPYP-GEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSN  176 (264)
T ss_dssp             TEEEEEESSSSEEEEEETTTTEEEEEEE-S-SS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---
T ss_pred             CEEEEEEecCCeEEEEccccceEEEEEecC-CcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCC
Confidence            344444 77899999999999888887664 4556776  55767777666778999995 334444433221  1    


Q ss_pred             eeEEEE----EEEEEeCCCeEEEEEcCCCcEEEEEe
Q 046394           88 VLKLQF----LLASINKLGQLRYQNVTMGEIVGNFW  119 (378)
Q Consensus        88 ~~~l~~----~l~s~~~d~~i~iwd~~~~~~~~~~~  119 (378)
                      .+-+.|    +.|-.-....|...|..+|+.+..+.
T Consensus       177 LNELE~i~G~IyANVW~td~I~~Idp~tG~V~~~iD  212 (264)
T PF05096_consen  177 LNELEYINGKIYANVWQTDRIVRIDPETGKVVGWID  212 (264)
T ss_dssp             EEEEEEETTEEEEEETTSSEEEEEETTT-BEEEEEE
T ss_pred             cEeEEEEcCEEEEEeCCCCeEEEEeCCCCeEEEEEE
Confidence            255666    55555566778888888888877664

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=94.83  E-value=0.53  Score=43.00  Aligned_cols=83  Identities=17%  Similarity=0.174  Sum_probs=58.1

Q ss_pred             eEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeC-CCCeEEeeccCCCe-------------------------eEE
Q 046394           38 QYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNR-DGTELHCSKEHGEV-------------------------LKL   91 (378)
Q Consensus        38 ~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~-------------------------~~l   91 (378)
                      .+.|......+.+|+.+|++++.|+...-|.|.++|. .+..++.+++-.+.                         ...
T Consensus       300 r~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~  379 (415)
T PF14655_consen  300 RFGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFA  379 (415)
T ss_pred             EEeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcce
Confidence            4445555556889999999999999888899999994 44444444433221                         111


Q ss_pred             EEEEEEEeCCCeEEEEEcCCCcEEEEEec
Q 046394           92 QFLLASINKLGQLRYQNVTMGEIVGNFWT  120 (378)
Q Consensus        92 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~  120 (378)
                      -|+++-+-.-|.|.||++++|..+..+..
T Consensus       380 l~LvIyaprRg~lEvW~~~~g~Rv~a~~v  408 (415)
T PF14655_consen  380 LFLVIYAPRRGILEVWSMRQGPRVAAFNV  408 (415)
T ss_pred             EEEEEEeccCCeEEEEecCCCCEEEEEEe
Confidence            22555667789999999999988887764

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=94.81  E-value=2.6  Score=36.96  Aligned_cols=201  Identities=15%  Similarity=0.152  Sum_probs=90.0

Q ss_pred             CCceEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEe---eccCCC--e--eEEEE----EEEEEeCCCeEEEEEcCCCcE
Q 046394           46 LGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTELHC---SKEHGE--V--LKLQF----LLASINKLGQLRYQNVTMGEI  114 (378)
Q Consensus        46 ~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~---~~~~~~--~--~~l~~----~l~s~~~d~~i~iwd~~~~~~  114 (378)
                      ..+..|.|..+.+-+++| ..|.|.. ..+|..-..   ......  .  .++.|    .+++ +..+. .+...+.|+.
T Consensus        17 ~~l~dV~F~d~~~G~~VG-~~g~il~-T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~~g~iv-G~~g~-ll~T~DgG~t   92 (302)
T PF14870_consen   17 KPLLDVAFVDPNHGWAVG-AYGTILK-TTDGGKTWQPVSLDLDNPFDYHLNSISFDGNEGWIV-GEPGL-LLHTTDGGKT   92 (302)
T ss_dssp             S-EEEEEESSSS-EEEEE-TTTEEEE-ESSTTSS-EE-----S-----EEEEEEEETTEEEEE-EETTE-EEEESSTTSS
T ss_pred             CceEEEEEecCCEEEEEe-cCCEEEE-ECCCCccccccccCCCccceeeEEEEEecCCceEEE-cCCce-EEEecCCCCC
Confidence            467899998555556665 4554432 233332211   111111  1  55666    3333 34443 2333334443


Q ss_pred             EEEEe---cCCCCeeEEEEcCCCCEEEEEcCCCe-------------eeecCCCEEEEEEecCCCEEEEEECCCeEEEEE
Q 046394          115 VGNFW---TGLGRTDVIRVNPFNGVVSLGHSGGT-------------MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWD  178 (378)
Q Consensus       115 ~~~~~---~~~~~v~~~~~s~~~~~l~~~~~d~~-------------~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd  178 (378)
                      -..+.   ..++....+....++..++++.....             ...-.+.+..+..+++|+++++++....+.-||
T Consensus        93 W~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~G~iy~T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~  172 (302)
T PF14870_consen   93 WERVPLSSKLPGSPFGITALGDGSAELAGDRGAIYRTTDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWD  172 (302)
T ss_dssp             -EE----TT-SS-EEEEEEEETTEEEEEETT--EEEESSTTSSEEEEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-
T ss_pred             cEEeecCCCCCCCeeEEEEcCCCcEEEEcCCCcEEEeCCCCCCeeEcccCCcceeEeEEECCCCcEEEEECcccEEEEec
Confidence            33322   11233334443334433333322222             333456788888899999998888777777888


Q ss_pred             cCC--ceeeeee-cCCceEEEEecCCCccccCCCCCce--------EEEeec------cCCcceeeeEEcCCCCeEEEec
Q 046394          179 LRK--YEVLQTL-PGHAKTLDFSRKDSGDFSGSHNYNR--------YMGYSM------VKGYQIGKVSFRPYEDVLGIGH  241 (378)
Q Consensus       179 ~~~--~~~~~~~-~~~i~~~~~sp~g~~~~~~~~~~~~--------~~~~~~------~~~~~v~~~~~sp~g~~l~~~~  241 (378)
                      --.  ..+.... ...+.++.|+|++..-+.. +....        ...+..      .....+.+++|.+++...|+|+
T Consensus       173 ~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg  251 (302)
T PF14870_consen  173 PGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG  251 (302)
T ss_dssp             TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEES
T ss_pred             CCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeC
Confidence            642  3333333 6789999999998752221 11111        111111      0223478899999988888777


Q ss_pred             CCCeEEEEEcCCC
Q 046394          242 SMGVSGILIPGSG  254 (378)
Q Consensus       242 ~~g~~~~~~~~s~  254 (378)
                      ..   .+++|..+
T Consensus       252 ~G---~l~~S~Dg  261 (302)
T PF14870_consen  252 SG---TLLVSTDG  261 (302)
T ss_dssp             TT----EEEESST
T ss_pred             Cc---cEEEeCCC
Confidence            76   44555443

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=94.75  E-value=0.96  Score=41.65  Aligned_cols=111  Identities=13%  Similarity=0.139  Sum_probs=68.0

Q ss_pred             EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCC--------EEEEEcCCCee------ee-------cCCC
Q 046394           94 LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNG--------VVSLGHSGGTM------LC-------HQGP  152 (378)
Q Consensus        94 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~--------~l~~~~~d~~~------~~-------h~~~  152 (378)
                      ++..++....++-.|+..|+.+..+..+..-  -+.|.|+..        .|+-.+..+.+      .+       ....
T Consensus       482 i~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esKdY  559 (776)
T COG5167         482 IYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESKDY  559 (776)
T ss_pred             EEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeehhc
Confidence            5667777788888999999999988876544  577777532        34444444431      01       1111


Q ss_pred             EEEEEEec----CCCEEEEEECCCeEEEEEcCC---ceeeeeecCCceEEEEecCCCcccc
Q 046394          153 VSALAFHP----NGHLMATSGKDCKIKIWDLRK---YEVLQTLPGHAKTLDFSRKDSGDFS  206 (378)
Q Consensus       153 v~~~~~sp----~g~~l~t~~~d~~i~iwd~~~---~~~~~~~~~~i~~~~~sp~g~~~~~  206 (378)
                      ++--.||.    ..-|+|.+|..|-|++||--.   ...+-.++..|..+..+.+|.+.+.
T Consensus       560 ~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ila  620 (776)
T COG5167         560 KTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILA  620 (776)
T ss_pred             cccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEE
Confidence            11112222    234899999999999999532   2223333566777777778775333

>PHA02713 hypothetical protein; Provisional

Probab=94.54  E-value=0.99  Score=43.53  Aligned_cols=23  Identities=17%  Similarity=0.193  Sum_probs=15.2

Q ss_pred             CCCEEEEEeCCC-----cEEEEeCCCCe
Q 046394           56 SGRYMAAAGCKG-----YPYFYNRDGTE   78 (378)
Q Consensus        56 ~g~~l~~~~~dg-----~i~iwd~~~~~   78 (378)
                      +|...+.||.++     .+..||.....
T Consensus       351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~  378 (557)
T PHA02713        351 DDTIYAIGGQNGTNVERTIECYTMGDDK  378 (557)
T ss_pred             CCEEEEECCcCCCCCCceEEEEECCCCe
Confidence            566777787654     47888865443

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.44  E-value=1.2  Score=45.65  Aligned_cols=62  Identities=8%  Similarity=0.193  Sum_probs=52.1

Q ss_pred             cCCCCeeEEEEcCCCCEEEEEcCCCe-----------------------------------ee-ecCCCEEEEEEecCCC
Q 046394          120 TGLGRTDVIRVNPFNGVVSLGHSGGT-----------------------------------ML-CHQGPVSALAFHPNGH  163 (378)
Q Consensus       120 ~~~~~v~~~~~s~~~~~l~~~~~d~~-----------------------------------~~-~h~~~v~~~~~sp~g~  163 (378)
                      .....|+|+....+|+.|++|-+++.                                   +. .+..+|..+++...-+
T Consensus       176 ~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR~  255 (1311)
T KOG1900|consen  176 VDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSRN  255 (1311)
T ss_pred             cCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccccc
Confidence            34567899998889999888877765                                   33 5677999999998888


Q ss_pred             EEEEEECCCeEEEEEcCC
Q 046394          164 LMATSGKDCKIKIWDLRK  181 (378)
Q Consensus       164 ~l~t~~~d~~i~iwd~~~  181 (378)
                      .+.+-+..|+|.+||+..
T Consensus       256 IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  256 ILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             eeeeeccCceEEEEEccC
Confidence            999999999999999976

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=94.38  E-value=1.4  Score=40.03  Aligned_cols=81  Identities=9%  Similarity=0.057  Sum_probs=45.8

Q ss_pred             CCeEEEEEcCCCcEEEEEecCCC--CeeEEEEc--CCCCEEEEEcCCCe-------------------------------
Q 046394          101 LGQLRYQNVTMGEIVGNFWTGLG--RTDVIRVN--PFNGVVSLGHSGGT-------------------------------  145 (378)
Q Consensus       101 d~~i~iwd~~~~~~~~~~~~~~~--~v~~~~~s--~~~~~l~~~~~d~~-------------------------------  145 (378)
                      ..++.+||+.+.+.++++.....  .+..+.|.  |+..+-++++.-..                               
T Consensus       221 G~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~l  300 (461)
T PF05694_consen  221 GHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWIL  300 (461)
T ss_dssp             --EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS--
T ss_pred             cCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccc
Confidence            46899999999999999886543  34556665  44555444443322                               


Q ss_pred             ------eeecCCCEEEEEEecCCCEEEEEE-CCCeEEEEEcCC
Q 046394          146 ------MLCHQGPVSALAFHPNGHLMATSG-KDCKIKIWDLRK  181 (378)
Q Consensus       146 ------~~~h~~~v~~~~~sp~g~~l~t~~-~d~~i~iwd~~~  181 (378)
                            +..-..-|+.|.+|.|.++|..+. .+|.|+.||+..
T Consensus       301 p~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISD  343 (461)
T PF05694_consen  301 PEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISD  343 (461)
T ss_dssp             -GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SS
T ss_pred             cccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCC
Confidence                  011135579999999999986655 789999999976

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=94.37  E-value=1.2  Score=43.06  Aligned_cols=120  Identities=9%  Similarity=-0.086  Sum_probs=59.3

Q ss_pred             ceeeeeecccceeeEEeecCCCCce-EEEEcCCCCEEEEEeCCC-----cEEEEeCCCCeEEeeccCCC---e-eEEEE-
Q 046394           25 AIAREVDILSSRNQYDIMLPELGPY-TLDFTSSGRYMAAAGCKG-----YPYFYNRDGTELHCSKEHGE---V-LKLQF-   93 (378)
Q Consensus        25 ~~i~~~d~~~~~~~~~l~~~~~~v~-~~~~sp~g~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~---~-~~l~~-   93 (378)
                      ..+..||..+.+....-........ +++ .-+|...|+||.||     +|-.||.....-........   . ....+ 
T Consensus       349 ~~ve~YD~~~~~W~~~a~M~~~R~~~~v~-~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~  427 (571)
T KOG4441|consen  349 SSVERYDPRTNQWTPVAPMNTKRSDFGVA-VLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLG  427 (571)
T ss_pred             ceEEEecCCCCceeccCCccCccccceeE-EECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEEC
Confidence            4566777777663321111111111 111 12577888998887     57778865544333221211   1 22233 


Q ss_pred             --EEEEEeCC------CeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe
Q 046394           94 --LLASINKL------GQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT  145 (378)
Q Consensus        94 --~l~s~~~d------~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~  145 (378)
                        +.+.||.+      .++..||..+......-+-.......-.-.-++.++++|+.++.
T Consensus       428 g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~  487 (571)
T KOG4441|consen  428 GKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGT  487 (571)
T ss_pred             CEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEECCEEEEECCccCC
Confidence              66677654      35677887776543322211122222233445667777777663

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=94.25  E-value=0.19  Score=41.08  Aligned_cols=80  Identities=10%  Similarity=-0.066  Sum_probs=47.5

Q ss_pred             CCeeecCCceeeEEEeccceeeeeecccceeeEEeecC-CCCceE-EEEcCCCCEEEEEeCCCcEEEEeC-CCCeEEeec
Q 046394            7 GGYLEAEGVEKTWRIKQEAIAREVDILSSRNQYDIMLP-ELGPYT-LDFTSSGRYMAAAGCKGYPYFYNR-DGTELHCSK   83 (378)
Q Consensus         7 ~~~l~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~l~~~-~~~v~~-~~~sp~g~~l~~~~~dg~i~iwd~-~~~~~~~~~   83 (378)
                      .||-......+.+.+..++.|.+|+..-.-....+... ...|.+ +.--.++.+..+++.+|.|+.|+. .+..+....
T Consensus        62 e~~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g  141 (238)
T KOG2444|consen   62 EGQRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVG  141 (238)
T ss_pred             cceeecccCceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeec
Confidence            45666666777888888999999887622222111111 122222 222234457889999999999994 344444444


Q ss_pred             cCC
Q 046394           84 EHG   86 (378)
Q Consensus        84 ~~~   86 (378)
                      .|.
T Consensus       142 ~h~  144 (238)
T KOG2444|consen  142 QHN  144 (238)
T ss_pred             ccc
Confidence            454

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.21  E-value=0.41  Score=48.17  Aligned_cols=121  Identities=12%  Similarity=0.055  Sum_probs=75.9

Q ss_pred             CCceEEEEcCCCCEEEEEeC--CCcEEEEeCCCCe------EEeeccCC-----Ce--eEEEE------EEEEEeCCCeE
Q 046394           46 LGPYTLDFTSSGRYMAAAGC--KGYPYFYNRDGTE------LHCSKEHG-----EV--LKLQF------LLASINKLGQL  104 (378)
Q Consensus        46 ~~v~~~~~sp~g~~l~~~~~--dg~i~iwd~~~~~------~~~~~~~~-----~~--~~l~~------~l~s~~~d~~i  104 (378)
                      ..+..+...+|+...++...  +-.|..||+..-+      -.-|..|.     .+  .++.|      ..+.+..|+.|
T Consensus       101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl  180 (1405)
T KOG3630|consen  101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL  180 (1405)
T ss_pred             ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence            34566777788776554433  3368888842211      11111111     11  55666      66777888989


Q ss_pred             EEEEcCCCcE-EEEEecCCCCeeEEEEcCCCCEEEEEcCCCe-------------e----eecCCCEEEEEEecCCCEEE
Q 046394          105 RYQNVTMGEI-VGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT-------------M----LCHQGPVSALAFHPNGHLMA  166 (378)
Q Consensus       105 ~iwd~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~-------------~----~~h~~~v~~~~~sp~g~~l~  166 (378)
                      .+..+..... +..+ ......++++|+|.|..+++|..+|.             +    ....+.|.+|+|-..-.+++
T Consensus       181 ~V~~~~~~~~~v~s~-p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~Wl~t~eflv  259 (1405)
T KOG3630|consen  181 RVKSTKQLAQNVTSF-PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTWLSTQEFLV  259 (1405)
T ss_pred             hhhhhhhhhhhhccc-CcccceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcCCCcceeEEEEecceeEEE
Confidence            8887654322 2332 23467899999999999999999998             0    01146789999987665655


Q ss_pred             E
Q 046394          167 T  167 (378)
Q Consensus       167 t  167 (378)
                      +
T Consensus       260 v  260 (1405)
T KOG3630|consen  260 V  260 (1405)
T ss_pred             E
Confidence            4

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=94.15  E-value=2.3  Score=41.08  Aligned_cols=115  Identities=10%  Similarity=0.139  Sum_probs=65.1

Q ss_pred             CCceEEEEcCCCCEEEEEeCCCcEEEEeCCCCeE---EeeccCCCeeEEEE-------EEEEEeCCCeEEEEEcCCCcEE
Q 046394           46 LGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTEL---HCSKEHGEVLKLQF-------LLASINKLGQLRYQNVTMGEIV  115 (378)
Q Consensus        46 ~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~~l~~-------~l~s~~~d~~i~iwd~~~~~~~  115 (378)
                      ..+.-+.-|.-++..++-+....+.|||..+..+   ..+..+..+.++.|       .+++.|..+.|.+|.-......
T Consensus        30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~  109 (631)
T PF12234_consen   30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYT  109 (631)
T ss_pred             CCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhh
Confidence            4555566666565555544555799999655443   23433445588998       6777778888888854211100


Q ss_pred             EEEecCCCCeeEEEEcCCCCEEEEEcCCCeeeecC-CCEEEEEEecCCCEEEEEECCCeEEEEEc
Q 046394          116 GNFWTGLGRTDVIRVNPFNGVVSLGHSGGTMLCHQ-GPVSALAFHPNGHLMATSGKDCKIKIWDL  179 (378)
Q Consensus       116 ~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~~~~h~-~~v~~~~~sp~g~~l~t~~~d~~i~iwd~  179 (378)
                      ... ..-..+..+..+                .|. .+|.+..|.++|.+++.+  ++.+.|+|-
T Consensus       110 ~~~-p~w~~i~~i~i~----------------~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk  155 (631)
T PF12234_consen  110 NKG-PSWAPIRKIDIS----------------SHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDK  155 (631)
T ss_pred             cCC-cccceeEEEEee----------------cCCCCCccceeEecCCeEEEEe--CCEEEEECC
Confidence            000 001122223221                232 578889999999655544  355777764

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=93.97  E-value=1.5  Score=41.30  Aligned_cols=121  Identities=12%  Similarity=0.118  Sum_probs=67.6

Q ss_pred             CCeeEEEEcCCCCEEEEEcC--CCe-------eeecCCCEEEEEEecCC----CEEEEEECCCeEEEEEcCC-----cee
Q 046394          123 GRTDVIRVNPFNGVVSLGHS--GGT-------MLCHQGPVSALAFHPNG----HLMATSGKDCKIKIWDLRK-----YEV  184 (378)
Q Consensus       123 ~~v~~~~~s~~~~~l~~~~~--d~~-------~~~h~~~v~~~~~sp~g----~~l~t~~~d~~i~iwd~~~-----~~~  184 (378)
                      .++..++|..-.+.+.+.-.  +|.       ..+.-..|..+.|.|-+    --|++......|.||.+-.     .+.
T Consensus        20 HPvhGlaWTDGkqVvLT~L~l~~gE~kfGds~viGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~   99 (671)
T PF15390_consen   20 HPVHGLAWTDGKQVVLTDLQLHNGEPKFGDSKVIGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKL   99 (671)
T ss_pred             ccccceEecCCCEEEEEeeeeeCCccccCCccEeeccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccc
Confidence            35556666654454444321  111       33445568889998842    2466666677899998752     222


Q ss_pred             eeee--------cCCceEEEEecCCCcc----------ccCCC-CCceE-EEeeccCCcceeeeEEcCCCCeEEEecCCC
Q 046394          185 LQTL--------PGHAKTLDFSRKDSGD----------FSGSH-NYNRY-MGYSMVKGYQIGKVSFRPYEDVLGIGHSMG  244 (378)
Q Consensus       185 ~~~~--------~~~i~~~~~sp~g~~~----------~~~~~-~~~~~-~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g  244 (378)
                      +..-        +--...+.|+|.....          +.+.. +...+ ....  ..+.|.|.+|.+||..|+++-...
T Consensus       100 l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~--~~G~IhCACWT~DG~RLVVAvGSs  177 (671)
T PF15390_consen  100 LMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIK--TSGLIHCACWTKDGQRLVVAVGSS  177 (671)
T ss_pred             eeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEecc--CCceEEEEEecCcCCEEEEEeCCe
Confidence            2211        1123667888877641          11111 11111 1222  356799999999999887776654


Q ss_pred             e
Q 046394          245 V  245 (378)
Q Consensus       245 ~  245 (378)
                      .
T Consensus       178 L  178 (671)
T PF15390_consen  178 L  178 (671)
T ss_pred             E
Confidence            3

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=93.96  E-value=0.5  Score=43.70  Aligned_cols=53  Identities=19%  Similarity=0.347  Sum_probs=37.5

Q ss_pred             EEEEEecCCCEEEEE-ECCC----eEEEEEcCCceeeeee-c-CCceEEEEecCCCcccc
Q 046394          154 SALAFHPNGHLMATS-GKDC----KIKIWDLRKYEVLQTL-P-GHAKTLDFSRKDSGDFS  206 (378)
Q Consensus       154 ~~~~~sp~g~~l~t~-~~d~----~i~iwd~~~~~~~~~~-~-~~i~~~~~sp~g~~~~~  206 (378)
                      ..+.+||+|+++|.+ +..|    .|+++|+.+++.+... . .....+.|.+|+...++
T Consensus       127 ~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y  186 (414)
T PF02897_consen  127 GGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFY  186 (414)
T ss_dssp             EEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEE
T ss_pred             eeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEE
Confidence            357889999987754 4444    6999999999887644 2 33344999999875433

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=93.84  E-value=0.019  Score=53.41  Aligned_cols=134  Identities=13%  Similarity=0.081  Sum_probs=77.5

Q ss_pred             eccceeeeeecccc--e--eeEEeec-CCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEe--e--ccCCCeeEEE
Q 046394           22 KQEAIAREVDILSS--R--NQYDIML-PELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTELHC--S--KEHGEVLKLQ   92 (378)
Q Consensus        22 ~~~~~i~~~d~~~~--~--~~~~l~~-~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~--~--~~~~~~~~l~   92 (378)
                      -.+..+.+||+.++  .  ....+.. ...+..+++|-.+.+++++|.....+.++|........  +  +.|.+.+---
T Consensus       126 rnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp  205 (783)
T KOG1008|consen  126 RNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDP  205 (783)
T ss_pred             cccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecC
Confidence            34566888998877  1  1122222 33566789999888899999988899999954322221  1  1233332222


Q ss_pred             E---EEEEEeCCCeEEEEE-cCCC-cEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCeeeecCCCEEEEEEecCC-CEEE
Q 046394           93 F---LLASINKLGQLRYQN-VTMG-EIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGTMLCHQGPVSALAFHPNG-HLMA  166 (378)
Q Consensus        93 ~---~l~s~~~d~~i~iwd-~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~~~~h~~~v~~~~~sp~g-~~l~  166 (378)
                      |   ++++ ..||.|-+|| ...- .++..+.....                        .....+..++|+|.. -.++
T Consensus       206 ~~~nY~cs-~~dg~iAiwD~~rnienpl~~i~~~~N------------------------~~~~~l~~~aycPtrtglla  260 (783)
T KOG1008|consen  206 FSPNYFCS-NSDGDIAIWDTYRNIENPLQIILRNEN------------------------KKPKQLFALAYCPTRTGLLA  260 (783)
T ss_pred             CCCCceec-cccCceeeccchhhhccHHHHHhhCCC------------------------CcccceeeEEeccCCcchhh
Confidence            2   4544 4599999999 3322 22222221111                        112246778888832 2455


Q ss_pred             EEEC-CCeEEEEEcC
Q 046394          167 TSGK-DCKIKIWDLR  180 (378)
Q Consensus       167 t~~~-d~~i~iwd~~  180 (378)
                      +++. .++|+++|+.
T Consensus       261 ~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  261 VLSRDSITIRLYDIC  275 (783)
T ss_pred             hhccCcceEEEeccc
Confidence            5554 4588899875

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=93.27  E-value=6.8  Score=36.22  Aligned_cols=175  Identities=14%  Similarity=0.054  Sum_probs=95.8

Q ss_pred             eeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEeecc---CCCe-eE----EEE---E
Q 046394           26 IAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTELHCSKE---HGEV-LK----LQF---L   94 (378)
Q Consensus        26 ~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~-~~----l~~---~   94 (378)
                      .|++|+. .|..+..+.-..+.+.++.|+.+.. |++-..||.+++||..|.....+..   ..++ .+    ..+   -
T Consensus        62 ~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~e~-LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~G  139 (410)
T PF04841_consen   62 SIQIYSS-SGKLLSSIPWDSGRIVGMGWTDDEE-LVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKNG  139 (410)
T ss_pred             EEEEECC-CCCEeEEEEECCCCEEEEEECCCCe-EEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCCC
Confidence            5888875 5666777766568999999998654 5566689999999977766111110   1111 11    111   1


Q ss_pred             EEEEeCCCeEEEEEcCCCc-EEEE---EecCC------CCeeE-EEEcCCCCEEEEEcCCCe---eeec-------CCCE
Q 046394           95 LASINKLGQLRYQNVTMGE-IVGN---FWTGL------GRTDV-IRVNPFNGVVSLGHSGGT---MLCH-------QGPV  153 (378)
Q Consensus        95 l~s~~~d~~i~iwd~~~~~-~~~~---~~~~~------~~v~~-~~~s~~~~~l~~~~~d~~---~~~h-------~~~v  153 (378)
                      ++.-..++.+.+.+--... ....   +....      ..... ..++.+....+....++.   +..+       .+++
T Consensus       140 ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~i~~~~~i  219 (410)
T PF04841_consen  140 IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQIDSDGPI  219 (410)
T ss_pred             EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEccccccccCCCCe
Confidence            2222234444433221111 1111   11100      01111 235555554444444333   2122       3679


Q ss_pred             EEEEEecCCCEEEEEECCCeEEEEEcCCce--eeeee--cCCceEEEEecCCC
Q 046394          154 SALAFHPNGHLMATSGKDCKIKIWDLRKYE--VLQTL--PGHAKTLDFSRKDS  202 (378)
Q Consensus       154 ~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~--~~~~~--~~~i~~~~~sp~g~  202 (378)
                      ..|++||+|+++|.-..+|.+.|....-.+  +-...  ...+..+.|.-+..
T Consensus       220 ~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~da  272 (410)
T PF04841_consen  220 IKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDA  272 (410)
T ss_pred             EEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCc
Confidence            999999999999999999998888654322  22333  45556666666544

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=93.20  E-value=0.074  Score=51.79  Aligned_cols=119  Identities=14%  Similarity=0.103  Sum_probs=66.3

Q ss_pred             ecCCCCceEEEEcCC-CCEEEEEeCCCcEEEEe---CCCCeEEeeccC-----C-CeeEEEE--------EEEEEeCCCe
Q 046394           42 MLPELGPYTLDFTSS-GRYMAAAGCKGYPYFYN---RDGTELHCSKEH-----G-EVLKLQF--------LLASINKLGQ  103 (378)
Q Consensus        42 ~~~~~~v~~~~~sp~-g~~l~~~~~dg~i~iwd---~~~~~~~~~~~~-----~-~~~~l~~--------~l~s~~~d~~  103 (378)
                      ++..++|-.+.|-.. ...++  -.-|.+.||+   +.|+....+--|     . .+.-+.|        ++..+-.++.
T Consensus       129 kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~  206 (1283)
T KOG1916|consen  129 KGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGE  206 (1283)
T ss_pred             hcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCc
Confidence            344556666666321 11111  2235788998   455543222111     1 1233444        5555666788


Q ss_pred             EEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCeeeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcC
Q 046394          104 LRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGTMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLR  180 (378)
Q Consensus       104 i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~  180 (378)
                      |++.++.+... ..|..|...+..++|-..|-.++                 -.+||||..|++++.||.++.|.+.
T Consensus       207 i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l-----------------~~lSpDGtv~a~a~~dG~v~f~Qiy  265 (1283)
T KOG1916|consen  207 IRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKL-----------------ASLSPDGTVFAWAISDGSVGFYQIY  265 (1283)
T ss_pred             eeEeeechHHH-HHHHhcCCCcccHHHHhhchhhh-----------------eeeCCCCcEEEEeecCCccceeeee
Confidence            88877654322 23344666666665544432111                 1279999999999999998888763

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=93.17  E-value=5.9  Score=38.85  Aligned_cols=85  Identities=7%  Similarity=0.057  Sum_probs=59.5

Q ss_pred             EEEEEeCCCeEEEEEcCC-------C-------------cEEEEEecCCCCeeEEEEc--CCCCEEEEEcCCCe------
Q 046394           94 LLASINKLGQLRYQNVTM-------G-------------EIVGNFWTGLGRTDVIRVN--PFNGVVSLGHSGGT------  145 (378)
Q Consensus        94 ~l~s~~~d~~i~iwd~~~-------~-------------~~~~~~~~~~~~v~~~~~s--~~~~~l~~~~~d~~------  145 (378)
                      .|+.|.+||.|.+|.+.+       .             ++...+. -...++.++++  ...++||+++....      
T Consensus       116 VLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf  194 (717)
T PF08728_consen  116 VLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAF  194 (717)
T ss_pred             EEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEEEEE
Confidence            888999999999997632       1             0111221 23578899998  77778888777665      


Q ss_pred             -----------eeecCCCEEEEEEecC-----CC-EEEEEECCCeEEEEEc
Q 046394          146 -----------MLCHQGPVSALAFHPN-----GH-LMATSGKDCKIKIWDL  179 (378)
Q Consensus       146 -----------~~~h~~~v~~~~~sp~-----g~-~l~t~~~d~~i~iwd~  179 (378)
                                 -..|...|.+|+|-++     |. ++++++-.|.+.+|++
T Consensus       195 ~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  195 ALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             eccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence                       1124456888999773     32 7888999999988887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=93.12  E-value=0.59  Score=38.87  Aligned_cols=72  Identities=17%  Similarity=0.204  Sum_probs=45.9

Q ss_pred             CCCCCCCeeecCCceeeEEEeccceeeeeecccceeeEEe-------e-------cCCCCceEEEEcCCCCEEEEEeCCC
Q 046394            2 LMPSEGGYLEAEGVEKTWRIKQEAIAREVDILSSRNQYDI-------M-------LPELGPYTLDFTSSGRYMAAAGCKG   67 (378)
Q Consensus         2 ~~~~~~~~l~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~l-------~-------~~~~~v~~~~~sp~g~~l~~~~~dg   67 (378)
                      .+++..-+|...+ ...+.++.+|.+++||+.+++.++.-       .       .....|..+.++.+|.-|++-+ +|
T Consensus        10 ~Lgs~~~~l~~~~-~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng   87 (219)
T PF07569_consen   10 VLGSPVSFLECNG-SYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NG   87 (219)
T ss_pred             ecCCceEEEEeCC-CEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CC
Confidence            4566666666544 44888999999999999998775442       1       1234455666666665544433 45


Q ss_pred             cEEEEeCC
Q 046394           68 YPYFYNRD   75 (378)
Q Consensus        68 ~i~iwd~~   75 (378)
                      ..+.|+.+
T Consensus        88 ~~y~y~~~   95 (219)
T PF07569_consen   88 DSYSYSPD   95 (219)
T ss_pred             CEEEeccc
Confidence            56666643

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=93.07  E-value=6.3  Score=35.25  Aligned_cols=31  Identities=26%  Similarity=0.546  Sum_probs=24.3

Q ss_pred             CceEEEEcCCCCEEEEEeCCCcEEEEeCCCCe
Q 046394           47 GPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTE   78 (378)
Q Consensus        47 ~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~   78 (378)
                      .+++|+|.|||+.++ +...|.|++++.++..
T Consensus         3 ~P~~~a~~pdG~l~v-~e~~G~i~~~~~~g~~   33 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLV-AERSGRIWVVDKDGSL   33 (331)
T ss_dssp             SEEEEEEETTSCEEE-EETTTEEEEEETTTEE
T ss_pred             CceEEEEeCCCcEEE-EeCCceEEEEeCCCcC
Confidence            468999999997655 4569999999955543

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=93.05  E-value=0.0069  Score=54.57  Aligned_cols=128  Identities=16%  Similarity=0.260  Sum_probs=83.5

Q ss_pred             CCceEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEeeccCCCeeEEEE------EEEEEeCCCeEEEEEcCCCcEEEEEe
Q 046394           46 LGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTELHCSKEHGEVLKLQF------LLASINKLGQLRYQNVTMGEIVGNFW  119 (378)
Q Consensus        46 ~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~l~~------~l~s~~~d~~i~iwd~~~~~~~~~~~  119 (378)
                      .++....|-|.+.-++.++.+..+..||..++..-.+.-......++|      .++.+-..+.+.+||+.+... .++.
T Consensus        35 v~pi~~~w~~e~~nlavaca~tiv~~YD~agq~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eyt-qqLE  113 (615)
T KOG2247|consen   35 VGPIIHRWRPEGHNLAVACANTIVIYYDKAGQVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYT-QQLE  113 (615)
T ss_pred             cccceeeEecCCCceehhhhhhHHHhhhhhcceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhH-HHHh
Confidence            455677888988779999999999999976665544433333344444      555666778999999975322 1121


Q ss_pred             -cCCCCeeEEEEcCCCCEEEEEcCCCe-------------eee-cCCCEEEEEEecCCCEEEEEECCCeEE
Q 046394          120 -TGLGRTDVIRVNPFNGVVSLGHSGGT-------------MLC-HQGPVSALAFHPNGHLMATSGKDCKIK  175 (378)
Q Consensus       120 -~~~~~v~~~~~s~~~~~l~~~~~d~~-------------~~~-h~~~v~~~~~sp~g~~l~t~~~d~~i~  175 (378)
                       +....-.-+.|++....++.+...+.             ..| |...++++++.+.+ +.+.++.|..+.
T Consensus       114 ~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd-~vil~dcd~~L~  183 (615)
T KOG2247|consen  114 SGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLED-YVILCDCDNTLS  183 (615)
T ss_pred             ccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccc-eeeecCcHHHHH
Confidence             11222223677777777776655444             334 88899999999987 566666665443

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=92.91  E-value=0.35  Score=28.14  Aligned_cols=30  Identities=13%  Similarity=0.047  Sum_probs=24.6

Q ss_pred             CCceEEEEcCCC---CEEEEEeCCCcEEEEeCC
Q 046394           46 LGPYTLDFTSSG---RYMAAAGCKGYPYFYNRD   75 (378)
Q Consensus        46 ~~v~~~~~sp~g---~~l~~~~~dg~i~iwd~~   75 (378)
                      ++|.++.|||+.   .+|+.+-..|.|.|+|..
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R   33 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTR   33 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcc
Confidence            468899999854   488888888999999954

It contains a characteristic DLL sequence motif.

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=92.76  E-value=3.4  Score=38.40  Aligned_cols=60  Identities=15%  Similarity=0.155  Sum_probs=38.4

Q ss_pred             CCCCeeEEEEcCCCCEEEEEcCCCeeeecCCCEEEEEEecCC---CEEEEEECCCeEEEEEcCCceeeeee
Q 046394          121 GLGRTDVIRVNPFNGVVSLGHSGGTMLCHQGPVSALAFHPNG---HLMATSGKDCKIKIWDLRKYEVLQTL  188 (378)
Q Consensus       121 ~~~~v~~~~~s~~~~~l~~~~~d~~~~~h~~~v~~~~~sp~g---~~l~t~~~d~~i~iwd~~~~~~~~~~  188 (378)
                      ....|+|=.++-+.+++.+.        ..-.+..++|+|+.   ..|+.-+.|++|||||+...+.+...
T Consensus       144 gk~~v~CRt~~i~~~~ftss--------~~ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~telylq  206 (741)
T KOG4460|consen  144 GKSTVNCRTTPVAERFFTSS--------TSLTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTELYLQ  206 (741)
T ss_pred             CCceEEEEeecccceeeccC--------CceeeeeccccCCccCCceEEEEecCcEEEEEecCCcchhhcc
Confidence            33445565555544443321        12245678899964   67888889999999999876655433

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=92.72  E-value=6  Score=34.12  Aligned_cols=58  Identities=22%  Similarity=0.227  Sum_probs=35.6

Q ss_pred             CCCCEEEEEeCCCcEEEEeC-CCCeEEeeccCCCeeEEEE-----EEEEEeCCCeEEEEEcCCCcE
Q 046394           55 SSGRYMAAAGCKGYPYFYNR-DGTELHCSKEHGEVLKLQF-----LLASINKLGQLRYQNVTMGEI  114 (378)
Q Consensus        55 p~g~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~~~l~~-----~l~s~~~d~~i~iwd~~~~~~  114 (378)
                      ..++.|+.|..+| +++++. .......+.....+..+..     .+++- .|+.+.++++..-..
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~~I~ql~vl~~~~~llvL-sd~~l~~~~L~~l~~   68 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILKLSSITQLSVLPELNLLLVL-SDGQLYVYDLDSLEP   68 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCccceeEeecceEEEEEEecccCEEEEE-cCCccEEEEchhhcc
Confidence            3578899998888 999996 3333333333323544444     22222 349999999876443

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=92.66  E-value=0.79  Score=26.30  Aligned_cols=38  Identities=16%  Similarity=0.291  Sum_probs=26.7

Q ss_pred             cCCCEEEEE-ECCCeEEEEEcCCceeeeee--cCCceEEEE
Q 046394          160 PNGHLMATS-GKDCKIKIWDLRKYEVLQTL--PGHAKTLDF  197 (378)
Q Consensus       160 p~g~~l~t~-~~d~~i~iwd~~~~~~~~~~--~~~i~~~~~  197 (378)
                      |++++|.++ ..+++|.++|..+++.+..+  ......++|
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~   41 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV   41 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence            567765554 46889999999988888777  344555554

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.42  E-value=4.4  Score=37.02  Aligned_cols=89  Identities=8%  Similarity=0.128  Sum_probs=54.2

Q ss_pred             cCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee-------cCCceEEEEecCCCccccCCCCCceEE------
Q 046394          149 HQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL-------PGHAKTLDFSRKDSGDFSGSHNYNRYM------  215 (378)
Q Consensus       149 h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~-------~~~i~~~~~sp~g~~~~~~~~~~~~~~------  215 (378)
                      ..++|.++.||+|.+.+|.--.|.+|.+++....+....+       ...|....|+.+....+........+.      
T Consensus        65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s~e~A~i~~~G~e~y~v~pekr  144 (657)
T KOG2377|consen   65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSSTEIAFITDQGIEFYQVLPEKR  144 (657)
T ss_pred             CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecCeeEEEEecCCeEEEEEchhhh
Confidence            4579999999999999999999999999987432222111       234666677665433222211112121      


Q ss_pred             ---EeeccCCcceeeeEEcCCCCeEE
Q 046394          216 ---GYSMVKGYQIGKVSFRPYEDVLG  238 (378)
Q Consensus       216 ---~~~~~~~~~v~~~~~sp~g~~l~  238 (378)
                         .... +...|+-..|+|+...+.
T Consensus       145 slRlVks-~~~nvnWy~yc~et~v~L  169 (657)
T KOG2377|consen  145 SLRLVKS-HNLNVNWYMYCPETAVIL  169 (657)
T ss_pred             hhhhhhh-cccCccEEEEccccceEe
Confidence               1122 445577788888876543

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=92.23  E-value=7.1  Score=33.85  Aligned_cols=155  Identities=14%  Similarity=0.124  Sum_probs=82.7

Q ss_pred             CCeeecCC----ceeeEEEeccceeeeeeccccee-----eEEeec-CCCCce-EEEEcCC--CCEEEEEe-CCCcEEEE
Q 046394            7 GGYLEAEG----VEKTWRIKQEAIAREVDILSSRN-----QYDIML-PELGPY-TLDFTSS--GRYMAAAG-CKGYPYFY   72 (378)
Q Consensus         7 ~~~l~~~~----~~~~~~~~~~~~i~~~d~~~~~~-----~~~l~~-~~~~v~-~~~~sp~--g~~l~~~~-~dg~i~iw   72 (378)
                      .+|.++.+    ....+..+.+++|.-|...-...     ...+.. ....|+ .+++...  +.+|+.+. .++.|-|+
T Consensus        88 ~~F~vt~~g~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVF  167 (336)
T TIGR03118        88 DTFVVSGEGITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVF  167 (336)
T ss_pred             CceEEcCCCcccceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEe
Confidence            44545442    33467778899999998533222     122322 235666 5666543  56666553 48899999


Q ss_pred             eCCCCeEEe---eccC-----CCeeEEEE----EEEE-------------EeCCCeEEEEEcCCCcEEEEEecCCCCeeE
Q 046394           73 NRDGTELHC---SKEH-----GEVLKLQF----LLAS-------------INKLGQLRYQNVTMGEIVGNFWTGLGRTDV  127 (378)
Q Consensus        73 d~~~~~~~~---~~~~-----~~~~~l~~----~l~s-------------~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~  127 (378)
                      |.+-.++..   +...     -.+..+.-    ++++             +..-|.|-++|+ .|+.++.+...      
T Consensus       168 d~~f~~~~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~------  240 (336)
T TIGR03118       168 KGSFRPPPLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASS------  240 (336)
T ss_pred             cCccccccCCCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccC------
Confidence            955444322   1111     11111111    1111             112245666665 45555555321      


Q ss_pred             EEEcCCCCEEEEEcCCCeeeecCCCEEEEEEec------CCCEEEEEECCCeEEEEEcCCceeeeee
Q 046394          128 IRVNPFNGVVSLGHSGGTMLCHQGPVSALAFHP------NGHLMATSGKDCKIKIWDLRKYEVLQTL  188 (378)
Q Consensus       128 ~~~s~~~~~l~~~~~d~~~~~h~~~v~~~~~sp------~g~~l~t~~~d~~i~iwd~~~~~~~~~~  188 (378)
                                          +.-...+.|+..|      .|.+|+---.||+|..||..++..+-.+
T Consensus       241 --------------------g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L  287 (336)
T TIGR03118       241 --------------------GRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQL  287 (336)
T ss_pred             --------------------CcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeee
Confidence                                1122234444443      4666766667999999999988876655

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=92.05  E-value=7  Score=33.32  Aligned_cols=109  Identities=17%  Similarity=0.200  Sum_probs=69.2

Q ss_pred             eEEEEcCCCCEEEEEeCCC--cEEEEeC-CCCeEEeeccCCCe--eEEEE----EEEEEeCCCeEEEEEcCCCcEEEEEe
Q 046394           49 YTLDFTSSGRYMAAAGCKG--YPYFYNR-DGTELHCSKEHGEV--LKLQF----LLASINKLGQLRYQNVTMGEIVGNFW  119 (378)
Q Consensus        49 ~~~~~sp~g~~l~~~~~dg--~i~iwd~-~~~~~~~~~~~~~~--~~l~~----~l~s~~~d~~i~iwd~~~~~~~~~~~  119 (378)
                      .++.|..+|.++-+.|.-|  .|+.+|. +|..+....-....  -.+..    ++.-.-.++...+||..+.+.+.++.
T Consensus        48 QGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f~yd~~tl~~~~~~~  127 (264)
T PF05096_consen   48 QGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGFVYDPNTLKKIGTFP  127 (264)
T ss_dssp             EEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEEE
T ss_pred             ccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEEEEccccceEEEEEe
Confidence            3888877888877877766  6888994 55555444433332  34444    44455678999999999999888876


Q ss_pred             cCCCCeeEEEEcCCCCEEEEEcCCCeeeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee
Q 046394          120 TGLGRTDVIRVNPFNGVVSLGHSGGTMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL  188 (378)
Q Consensus       120 ~~~~~v~~~~~s~~~~~l~~~~~d~~~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~  188 (378)
                      .. +                          .+  ..++  .+|..|+.+.....|.++|..+.+...++
T Consensus       128 y~-~--------------------------EG--WGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i  165 (264)
T PF05096_consen  128 YP-G--------------------------EG--WGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTI  165 (264)
T ss_dssp             -S-S--------------------------S----EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEE
T ss_pred             cC-C--------------------------cc--eEEE--cCCCEEEEECCccceEEECCcccceEEEE
Confidence            32 1                          11  3444  45666666666778888888877766655

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PRK13684 Ycf48-like protein; Provisional

Probab=91.81  E-value=9.2  Score=34.23  Aligned_cols=131  Identities=13%  Similarity=0.057  Sum_probs=67.2

Q ss_pred             CCceEEEEcCCCCEEEEEeCCCcEEE-EeCCCCeEEeeccCC--CeeEEEE----EEEEEeCCCeEEEEEcCCCcEEEEE
Q 046394           46 LGPYTLDFTSSGRYMAAAGCKGYPYF-YNRDGTELHCSKEHG--EVLKLQF----LLASINKLGQLRYQNVTMGEIVGNF  118 (378)
Q Consensus        46 ~~v~~~~~sp~g~~l~~~~~dg~i~i-wd~~~~~~~~~~~~~--~~~~l~~----~l~s~~~d~~i~iwd~~~~~~~~~~  118 (378)
                      ..++++.+.|++.+++++ ..|.+.. ++..+..-..+....  ..+++.+    .++..+..|.+.+=....|......
T Consensus       173 g~~~~i~~~~~g~~v~~g-~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d~G~sW~~~  251 (334)
T PRK13684        173 GVVRNLRRSPDGKYVAVS-SRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLARGGQIRFNDPDDLESWSKP  251 (334)
T ss_pred             ceEEEEEECCCCeEEEEe-CCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEecCCEEEEccCCCCCccccc
Confidence            457789999998777665 4565543 233333222232222  2266666    3333445676643223344432222


Q ss_pred             ecC----CCCeeEEEEcCCCCEEEEEcCCCe------------ee---ecCCCEEEEEEecCCCEEEEEECCCeEEEEE
Q 046394          119 WTG----LGRTDVIRVNPFNGVVSLGHSGGT------------ML---CHQGPVSALAFHPNGHLMATSGKDCKIKIWD  178 (378)
Q Consensus       119 ~~~----~~~v~~~~~s~~~~~l~~~~~d~~------------~~---~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd  178 (378)
                      ...    ...+..+.+.|++..++++.....            ..   .-....+.+.|..+++.++ .+..|.|.-|+
T Consensus       252 ~~~~~~~~~~l~~v~~~~~~~~~~~G~~G~v~~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~G~il~~~  329 (334)
T PRK13684        252 IIPEITNGYGYLDLAYRTPGEIWAGGGNGTLLVSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQRGVLLRYV  329 (334)
T ss_pred             cCCccccccceeeEEEcCCCCEEEEcCCCeEEEeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-ECCCceEEEec
Confidence            211    134677888888776665543322            11   1112356666665555444 55577776664

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=91.62  E-value=11  Score=34.79  Aligned_cols=86  Identities=12%  Similarity=0.030  Sum_probs=47.4

Q ss_pred             ceeeeeecccceeeEEe-ecCCCCceEEEEcCCCCEEEEEeCCC-----------cEEEEeCCCCe---EEeeccCCCe-
Q 046394           25 AIAREVDILSSRNQYDI-MLPELGPYTLDFTSSGRYMAAAGCKG-----------YPYFYNRDGTE---LHCSKEHGEV-   88 (378)
Q Consensus        25 ~~i~~~d~~~~~~~~~l-~~~~~~v~~~~~sp~g~~l~~~~~dg-----------~i~iwd~~~~~---~~~~~~~~~~-   88 (378)
                      ..++++|+.+++.+... ..  ....++.|.++++.|+....+.           .|+.|.+....   ...+...... 
T Consensus       150 ~~l~v~Dl~tg~~l~d~i~~--~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~  227 (414)
T PF02897_consen  150 YTLRVFDLETGKFLPDGIEN--PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPF  227 (414)
T ss_dssp             EEEEEEETTTTEEEEEEEEE--EESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTT
T ss_pred             EEEEEEECCCCcCcCCcccc--cccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCc
Confidence            45999999999765432 22  1222499999988766554433           26777743221   2333333322 


Q ss_pred             --eEEEE------EEEEEeC--C-CeEEEEEcCCC
Q 046394           89 --LKLQF------LLASINK--L-GQLRYQNVTMG  112 (378)
Q Consensus        89 --~~l~~------~l~s~~~--d-~~i~iwd~~~~  112 (378)
                        ..+..      +++....  + ..+.+.|+..+
T Consensus       228 ~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~  262 (414)
T PF02897_consen  228 WFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG  262 (414)
T ss_dssp             SEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred             EEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence              23333      3433333  3 45888888764

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=91.24  E-value=2.7  Score=42.69  Aligned_cols=106  Identities=8%  Similarity=-0.004  Sum_probs=64.5

Q ss_pred             EEEEEeCCCeEEEEEcCCCcE--------EE---EEecCCCCeeEEEEcCCCC-EEEEEcCCCe--------------ee
Q 046394           94 LLASINKLGQLRYQNVTMGEI--------VG---NFWTGLGRTDVIRVNPFNG-VVSLGHSGGT--------------ML  147 (378)
Q Consensus        94 ~l~s~~~d~~i~iwd~~~~~~--------~~---~~~~~~~~v~~~~~s~~~~-~l~~~~~d~~--------------~~  147 (378)
                      .++..+.+-.|..||+.....        +.   +.........++.|+|.-. ..++...|+.              -.
T Consensus       116 ~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~  195 (1405)
T KOG3630|consen  116 VVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSF  195 (1405)
T ss_pred             EEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhhccc
Confidence            334444455788999875321        11   1111234567888888653 3444444544              11


Q ss_pred             ecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee-------cCCceEEEEecC
Q 046394          148 CHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL-------PGHAKTLDFSRK  200 (378)
Q Consensus       148 ~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~-------~~~i~~~~~sp~  200 (378)
                      .....+++++|+|.|+.++.|-..|++.-|-. +++....+       ...|.+|+|-..
T Consensus       196 p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P-~leik~~ip~Pp~~e~yrvl~v~Wl~t  254 (1405)
T KOG3630|consen  196 PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEP-SLEIKSEIPEPPVEENYRVLSVTWLST  254 (1405)
T ss_pred             CcccceeeEEeccccceeeEecCCCeEEEeec-ccceeecccCCCcCCCcceeEEEEecc
Confidence            23456789999999999999999999888754 33333333       256777777543

>PHA03098 kelch-like protein; Provisional

Probab=91.02  E-value=8.8  Score=36.93  Aligned_cols=59  Identities=3%  Similarity=-0.075  Sum_probs=30.5

Q ss_pred             CCCEEEEEeCC-----CcEEEEeCCCCeEEeeccC---CCe-eEEEE---EEEEEeCC------CeEEEEEcCCCcE
Q 046394           56 SGRYMAAAGCK-----GYPYFYNRDGTELHCSKEH---GEV-LKLQF---LLASINKL------GQLRYQNVTMGEI  114 (378)
Q Consensus        56 ~g~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~---~~~-~~l~~---~l~s~~~d------~~i~iwd~~~~~~  114 (378)
                      ++..++.||.+     ..+..||.....-......   ... ....+   +++.||.+      ..+..||+.+.+.
T Consensus       342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W  418 (534)
T PHA03098        342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKW  418 (534)
T ss_pred             CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCee
Confidence            56677777765     2577788544332222211   111 22223   55556532      4578889876543

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.82  E-value=6.8  Score=35.87  Aligned_cols=137  Identities=11%  Similarity=0.095  Sum_probs=80.0

Q ss_pred             CCCCCeeecCCceeeEEEeccceeeeeecccc--eeeEEee-cCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEE
Q 046394            4 PSEGGYLEAEGVEKTWRIKQEAIAREVDILSS--RNQYDIM-LPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTELH   80 (378)
Q Consensus         4 ~~~~~~l~~~~~~~~~~~~~~~~i~~~d~~~~--~~~~~l~-~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~   80 (378)
                      |+-+|.+-.+.....+.+...+..- |-+...  ....++. ...++|.+|.||+|.+.||+--.+.+|.+++..+....
T Consensus        23 pesngvFfDDaNkqlfavrSggatg-vvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~  101 (657)
T KOG2377|consen   23 PESNGVFFDDANKQLFAVRSGGATG-VVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQ  101 (657)
T ss_pred             CcccceeeccCcceEEEEecCCeeE-EEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchh
Confidence            5556666655555566655544322 222111  2222232 23468999999999999999999999999996433221


Q ss_pred             ee---c--cCCC-eeEEEE----EEEEEeCCCeEEEEEcCC-CcEEEEEecCCCCeeEEEEcCCCCEEEEEcC
Q 046394           81 CS---K--EHGE-VLKLQF----LLASINKLGQLRYQNVTM-GEIVGNFWTGLGRTDVIRVNPFNGVVSLGHS  142 (378)
Q Consensus        81 ~~---~--~~~~-~~~l~~----~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  142 (378)
                      ..   .  ..+. +....|    -+|..++.| +-+|.+.. ...++....+...|+...|.++.+.+..++.
T Consensus       102 l~~~~~ck~k~~~IlGF~W~~s~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~  173 (657)
T KOG2377|consen  102 LEYTQECKTKNANILGFCWTSSTEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTT  173 (657)
T ss_pred             hHHHHHhccCcceeEEEEEecCeeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeecc
Confidence            11   1  1111 345555    344443333 55565443 2345555667788999999999886554443

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=90.77  E-value=8.6  Score=31.97  Aligned_cols=175  Identities=10%  Similarity=0.045  Sum_probs=91.8

Q ss_pred             CEEEEEeCCCcEEEEeCCCCeEEeeccCCCe-eEEEE--------EEEEEeCCCeEEEEEcC--CCcEEEEEec-----C
Q 046394           58 RYMAAAGCKGYPYFYNRDGTELHCSKEHGEV-LKLQF--------LLASINKLGQLRYQNVT--MGEIVGNFWT-----G  121 (378)
Q Consensus        58 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~l~~--------~l~s~~~d~~i~iwd~~--~~~~~~~~~~-----~  121 (378)
                      .++.+--..|.|.-||.....+........+ .++.+        +.+.++.--.|--||-.  ......++..     .
T Consensus        28 sLl~VDi~ag~v~r~D~~qn~v~ra~ie~p~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d~k  107 (310)
T KOG4499|consen   28 SLLYVDIEAGEVHRYDIEQNKVYRAKIEGPPSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPDRK  107 (310)
T ss_pred             eEEEEEeccCceehhhhhhhheEEEEEecCcceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCchHH
Confidence            3455555567777788554444332222221 22333        34444444445556632  2223333211     1


Q ss_pred             CCCeeEEEEcCCCCEEEEEcCCCe-------------eeecC--------CCEEEEEEecCCCEE-EEEECCCeEEEEE-
Q 046394          122 LGRTDVIRVNPFNGVVSLGHSGGT-------------MLCHQ--------GPVSALAFHPNGHLM-ATSGKDCKIKIWD-  178 (378)
Q Consensus       122 ~~~v~~~~~s~~~~~l~~~~~d~~-------------~~~h~--------~~v~~~~~sp~g~~l-~t~~~d~~i~iwd-  178 (378)
                      ....+.-..+|+|++++-.-.+-.             +.+|.        +.-+.++|+.+.+.+ ++-+.+-.|.-|| 
T Consensus       108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dy  187 (310)
T KOG4499|consen  108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDY  187 (310)
T ss_pred             hcccccCccCCCCceeeeeeccccccccccccEEEEeccCCCceeeehhccCCccccccccCcEEEEEccCceEEeeeec
Confidence            345667778999998554333332             22332        222467888766654 4556677887787 


Q ss_pred             -cCCceee-----eee-------cCCceEEEEecCCCc----------cccCCCCCceEEEeeccCCcceeeeEEcCC
Q 046394          179 -LRKYEVL-----QTL-------PGHAKTLDFSRKDSG----------DFSGSHNYNRYMGYSMVKGYQIGKVSFRPY  233 (378)
Q Consensus       179 -~~~~~~~-----~~~-------~~~i~~~~~sp~g~~----------~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~  233 (378)
                       ..+|...     ..+       +.....++...+|..          ...+..++..+..+.. ....|++++|---
T Consensus       188 d~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eikl-Pt~qitsccFgGk  264 (310)
T KOG4499|consen  188 DCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKL-PTPQITSCCFGGK  264 (310)
T ss_pred             CCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEc-CCCceEEEEecCC
Confidence             5555442     222       112233344444443          3345567777777777 6777999998643

>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins

Probab=90.66  E-value=7.8  Score=35.98  Aligned_cols=31  Identities=29%  Similarity=0.530  Sum_probs=25.5

Q ss_pred             CCEEEEEEecCCCEEEEEECCCeEEEEEcCC
Q 046394          151 GPVSALAFHPNGHLMATSGKDCKIKIWDLRK  181 (378)
Q Consensus       151 ~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~  181 (378)
                      ..|.+++..+..+.+++.+.+|.|.+||+..
T Consensus       190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~  220 (422)
T PF08801_consen  190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP  220 (422)
T ss_dssp             --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred             hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence            3499999999889999999999999999974

RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=90.65  E-value=13  Score=33.81  Aligned_cols=18  Identities=28%  Similarity=0.447  Sum_probs=14.3

Q ss_pred             CCceEEEEcCCCCEEEEE
Q 046394           46 LGPYTLDFTSSGRYMAAA   63 (378)
Q Consensus        46 ~~v~~~~~sp~g~~l~~~   63 (378)
                      ..+..|+|.++|+++++-
T Consensus        14 ~~P~~ia~d~~G~l~V~e   31 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAE   31 (367)
T ss_pred             CCCceeeECCCCCEEEEe
Confidence            467799999999876664

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=90.07  E-value=23  Score=35.84  Aligned_cols=135  Identities=13%  Similarity=0.127  Sum_probs=77.5

Q ss_pred             cEEEEeCCCCeEEeeccCCCe-eEEEE----EEEEEeCCCeEEEEEcCCCcEEEEE-ecCCCCeeEEEEcCCC---C---
Q 046394           68 YPYFYNRDGTELHCSKEHGEV-LKLQF----LLASINKLGQLRYQNVTMGEIVGNF-WTGLGRTDVIRVNPFN---G---  135 (378)
Q Consensus        68 ~i~iwd~~~~~~~~~~~~~~~-~~l~~----~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~v~~~~~s~~~---~---  135 (378)
                      .|++++..+ .+..+....+. ...++    .++.++.++.+...++..+...... ..-...|.|+.++|-|   +   
T Consensus       471 ~iRl~ss~~-~~~~W~~p~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~  549 (1096)
T KOG1897|consen  471 SIRLVSSAG-LRSEWRPPGKITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSR  549 (1096)
T ss_pred             cEEEEcchh-hhhcccCCCceEEEEEeecceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcce
Confidence            466666442 23334434443 33333    6777777788888888766522211 1234679999999752   2   


Q ss_pred             EEEEEcCCCe-----------eeecC--------CCEEEEEEecCCCEEEEEECCCeEEEE--EcCCceee--e--ee-c
Q 046394          136 VVSLGHSGGT-----------MLCHQ--------GPVSALAFHPNGHLMATSGKDCKIKIW--DLRKYEVL--Q--TL-P  189 (378)
Q Consensus       136 ~l~~~~~d~~-----------~~~h~--------~~v~~~~~sp~g~~l~t~~~d~~i~iw--d~~~~~~~--~--~~-~  189 (378)
                      ++++|..+..           +..|.        ..|.-.+|-.|..+|.++..||.+.-|  |..+|..-  +  .+ .
T Consensus       550 ~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt  629 (1096)
T KOG1897|consen  550 LLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGT  629 (1096)
T ss_pred             EEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCC
Confidence            6777766555           22222        234445566678899999999987755  55555442  1  22 3


Q ss_pred             CCceEEEEecCCCc
Q 046394          190 GHAKTLDFSRKDSG  203 (378)
Q Consensus       190 ~~i~~~~~sp~g~~  203 (378)
                      .|+.--.|+..+..
T Consensus       630 ~P~~Lr~f~sk~~t  643 (1096)
T KOG1897|consen  630 QPISLRTFSSKSRT  643 (1096)
T ss_pred             CCcEEEEEeeCCce
Confidence            45555566655554

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=89.95  E-value=7.4  Score=36.30  Aligned_cols=26  Identities=19%  Similarity=0.215  Sum_probs=17.8

Q ss_pred             CEEEEEEecCCCEEEEEECCCeEEEE
Q 046394          152 PVSALAFHPNGHLMATSGKDCKIKIW  177 (378)
Q Consensus       152 ~v~~~~~sp~g~~l~t~~~d~~i~iw  177 (378)
                      .|..+..+|.|..++.+|.+|.+.++
T Consensus       105 eV~~vl~s~~GS~VaL~G~~Gi~vMe  130 (741)
T KOG4460|consen  105 EVYQVLLSPTGSHVALIGIKGLMVME  130 (741)
T ss_pred             EEEEEEecCCCceEEEecCCeeEEEE
Confidence            45667777888777777777754443

>PHA02790 Kelch-like protein; Provisional

Probab=89.61  E-value=17  Score=34.39  Aligned_cols=60  Identities=3%  Similarity=-0.112  Sum_probs=31.1

Q ss_pred             CCCCEEEEEeCC--CcEEEEeCCCCeEEeeccCCC---e-eEEEE---EEEEEeCC---CeEEEEEcCCCcE
Q 046394           55 SSGRYMAAAGCK--GYPYFYNRDGTELHCSKEHGE---V-LKLQF---LLASINKL---GQLRYQNVTMGEI  114 (378)
Q Consensus        55 p~g~~l~~~~~d--g~i~iwd~~~~~~~~~~~~~~---~-~~l~~---~l~s~~~d---~~i~iwd~~~~~~  114 (378)
                      -+|...++||.+  ..+..||.....-..+..-..   . ....+   +.+.||.+   ..+..||..+.+-
T Consensus       317 ~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W  388 (480)
T PHA02790        317 ANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQW  388 (480)
T ss_pred             ECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEE
Confidence            456666777753  357788854333222221111   1 22233   56666654   3467888776543

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=89.48  E-value=8.5  Score=31.60  Aligned_cols=30  Identities=23%  Similarity=0.469  Sum_probs=20.5

Q ss_pred             CCCEEEEEEec-CCCEEEEEECCCeEEEEEcCC
Q 046394          150 QGPVSALAFHP-NGHLMATSGKDCKIKIWDLRK  181 (378)
Q Consensus       150 ~~~v~~~~~sp-~g~~l~t~~~d~~i~iwd~~~  181 (378)
                      +.++.+++..| .|++++.+  ++.+.||.+..
T Consensus       134 ~~~p~ciaCC~~tG~LlVg~--~~~l~lf~l~~  164 (215)
T PF14761_consen  134 SEPPLCIACCPVTGNLLVGC--GNKLVLFTLKY  164 (215)
T ss_pred             CCCCCEEEecCCCCCEEEEc--CCEEEEEEEEE
Confidence            45677888888 67655433  56788887754

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=88.94  E-value=19  Score=35.06  Aligned_cols=54  Identities=13%  Similarity=0.264  Sum_probs=38.0

Q ss_pred             eCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCeeeecCCCEEEEEEe--cCCCEEEEEECCCeEEE
Q 046394           99 NKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGTMLCHQGPVSALAFH--PNGHLMATSGKDCKIKI  176 (378)
Q Consensus        99 ~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~~~~h~~~v~~~~~s--p~g~~l~t~~~d~~i~i  176 (378)
                      +....+.|||...+.....-.                           ....+.|.++.|.  |+|+.+++.|..+.|.+
T Consensus        48 ~~~~~LtIWD~~~~~lE~~~~---------------------------f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l  100 (631)
T PF12234_consen   48 SSRSELTIWDTRSGVLEYEES---------------------------FSEDDPIRDLDWTSTPDGQSILAVGFPHHVLL  100 (631)
T ss_pred             CCCCEEEEEEcCCcEEEEeee---------------------------ecCCCceeeceeeecCCCCEEEEEEcCcEEEE
Confidence            344579999998776332221                           1235667777775  58999999999999999


Q ss_pred             EEc
Q 046394          177 WDL  179 (378)
Q Consensus       177 wd~  179 (378)
                      |--
T Consensus       101 ~~Q  103 (631)
T PF12234_consen  101 YTQ  103 (631)
T ss_pred             EEc
Confidence            854

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=88.74  E-value=19  Score=33.12  Aligned_cols=89  Identities=16%  Similarity=0.144  Sum_probs=48.6

Q ss_pred             cceeeeeecccceeeEEeecCCCC--ceEEEEcC--CCCEEEEEeC-CCcEEEEeC--CC----CeEEeeccC-------
Q 046394           24 EAIAREVDILSSRNQYDIMLPELG--PYTLDFTS--SGRYMAAAGC-KGYPYFYNR--DG----TELHCSKEH-------   85 (378)
Q Consensus        24 ~~~i~~~d~~~~~~~~~l~~~~~~--v~~~~~sp--~g~~l~~~~~-dg~i~iwd~--~~----~~~~~~~~~-------   85 (378)
                      ...+++||+.+.+.+.++.....+  +..+.|..  +..+-++|+. .++|..|-.  ++    +.+..+...       
T Consensus       221 G~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~l  300 (461)
T PF05694_consen  221 GHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWIL  300 (461)
T ss_dssp             --EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS--
T ss_pred             cCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccc
Confidence            478999999999999999876543  56777754  4555444433 445555542  22    112222111       


Q ss_pred             ----------CCe-eEEEE------EEEEEeCCCeEEEEEcCCC
Q 046394           86 ----------GEV-LKLQF------LLASINKLGQLRYQNVTMG  112 (378)
Q Consensus        86 ----------~~~-~~l~~------~l~s~~~d~~i~iwd~~~~  112 (378)
                                ... +.+..      +.+++-.+|.|+.||+...
T Consensus       301 p~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP  344 (461)
T PF05694_consen  301 PEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDP  344 (461)
T ss_dssp             -GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SST
T ss_pred             cccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCC
Confidence                      122 45444      6677778999999999863

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=88.64  E-value=1.9  Score=24.31  Aligned_cols=28  Identities=14%  Similarity=0.209  Sum_probs=18.8

Q ss_pred             CCCceEEEEcCCCCEEEEEeC-C--CcEEEE
Q 046394           45 ELGPYTLDFTSSGRYMAAAGC-K--GYPYFY   72 (378)
Q Consensus        45 ~~~v~~~~~sp~g~~l~~~~~-d--g~i~iw   72 (378)
                      ...-....|||||++|+.++. +  |...||
T Consensus         8 ~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    8 PGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             SSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             CccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            345668899999998776654 4  555555

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=88.37  E-value=20  Score=36.03  Aligned_cols=63  Identities=10%  Similarity=-0.011  Sum_probs=43.1

Q ss_pred             CCEEEEEeCCCcEEEEe-CCCCeEEeeccCCCe---------eEEE------------------E---EEEEEeCCCeEE
Q 046394           57 GRYMAAAGCKGYPYFYN-RDGTELHCSKEHGEV---------LKLQ------------------F---LLASINKLGQLR  105 (378)
Q Consensus        57 g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~---------~~l~------------------~---~l~s~~~d~~i~  105 (378)
                      +..|++++.++.|+-.| .+|+.+..+......         ..+.                  .   .++.++.|+.|.
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li  273 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI  273 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence            45777788888888888 677777665432211         0011                  1   466677889999


Q ss_pred             EEEcCCCcEEEEEe
Q 046394          106 YQNVTMGEIVGNFW  119 (378)
Q Consensus       106 iwd~~~~~~~~~~~  119 (378)
                      -.|..+|+.+..|.
T Consensus       274 ALDA~TGk~~W~fg  287 (764)
T TIGR03074       274 ALDADTGKLCEDFG  287 (764)
T ss_pred             EEECCCCCEEEEec
Confidence            99999999887774

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=87.85  E-value=3.5  Score=34.28  Aligned_cols=29  Identities=17%  Similarity=0.379  Sum_probs=24.9

Q ss_pred             EecCCCEEEEEECCCeEEEEEcCCceeee
Q 046394          158 FHPNGHLMATSGKDCKIKIWDLRKYEVLQ  186 (378)
Q Consensus       158 ~sp~g~~l~t~~~d~~i~iwd~~~~~~~~  186 (378)
                      +..++++|++.+.+|.+++||+.+++++.
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~   46 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVL   46 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeecc
Confidence            45578899999999999999999987644

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=87.46  E-value=14  Score=30.14  Aligned_cols=89  Identities=16%  Similarity=0.097  Sum_probs=49.2

Q ss_pred             cceeeeeecccceeeEEeecCCCCce--EEEEcCCCCEEEEEeCCCcEEEEeCC-CCeEEeeccCCCeeEEEE---EEEE
Q 046394           24 EAIAREVDILSSRNQYDIMLPELGPY--TLDFTSSGRYMAAAGCKGYPYFYNRD-GTELHCSKEHGEVLKLQF---LLAS   97 (378)
Q Consensus        24 ~~~i~~~d~~~~~~~~~l~~~~~~v~--~~~~sp~g~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~l~~---~l~s   97 (378)
                      ...|++||+.+++.+++-......++  .+.-.-|.-+.++ -.+|.-.++|.+ -+++..+.-......++.   .+..
T Consensus        67 ~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LT-w~egvaf~~d~~t~~~lg~~~y~GeGWgLt~d~~~Lim  145 (262)
T COG3823          67 FSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLT-WKEGVAFKYDADTLEELGRFSYEGEGWGLTSDDKNLIM  145 (262)
T ss_pred             cceeEEEeccCceEEEEeecCCccccccceeeccceEEEEE-eccceeEEEChHHhhhhcccccCCcceeeecCCcceEe
Confidence            36789999999999888766533333  2222222223333 357888888843 333444433333355555   4444


Q ss_pred             EeCCCeEEEEEcCCCc
Q 046394           98 INKLGQLRYQNVTMGE  113 (378)
Q Consensus        98 ~~~d~~i~iwd~~~~~  113 (378)
                      ++...++..-|..+..
T Consensus       146 sdGsatL~frdP~tfa  161 (262)
T COG3823         146 SDGSATLQFRDPKTFA  161 (262)
T ss_pred             eCCceEEEecCHHHhh
Confidence            4444556666655443

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=87.32  E-value=23  Score=32.23  Aligned_cols=105  Identities=12%  Similarity=0.028  Sum_probs=69.8

Q ss_pred             ceeeEEEeccceeeeeecccceeeEEeecCC--CCceEEEEcCCCCEEEEEeCCCcEEEEeC-CCCeEEeeccCC--Ce-
Q 046394           15 VEKTWRIKQEAIAREVDILSSRNQYDIMLPE--LGPYTLDFTSSGRYMAAAGCKGYPYFYNR-DGTELHCSKEHG--EV-   88 (378)
Q Consensus        15 ~~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~--~~v~~~~~sp~g~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~--~~-   88 (378)
                      .++++....++.+..+|..++..++....-.  ..+.+-.+..+|+ |++++.+|.++.+|. +|..+.......  .. 
T Consensus        68 dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~  146 (370)
T COG1520          68 DGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYA  146 (370)
T ss_pred             CCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCeEEe
Confidence            5556666677888889999988766544331  2222223333675 778888999999996 898888877666  11 


Q ss_pred             eEEEE---EEEEEeCCCeEEEEEcCCCcEEEEEec
Q 046394           89 LKLQF---LLASINKLGQLRYQNVTMGEIVGNFWT  120 (378)
Q Consensus        89 ~~l~~---~l~s~~~d~~i~iwd~~~~~~~~~~~~  120 (378)
                      ....+   .+..++.++.+...|..+|........
T Consensus       147 ~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~  181 (370)
T COG1520         147 SPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYET  181 (370)
T ss_pred             cCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEec
Confidence            12222   444444789999999999988776543

>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)

Probab=87.18  E-value=20  Score=31.50  Aligned_cols=128  Identities=15%  Similarity=0.152  Sum_probs=71.7

Q ss_pred             ceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeeccCCCe------eEEEE-----EEEEEeCCCeEEEEEcCCCcEE
Q 046394           48 PYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKEHGEV------LKLQF-----LLASINKLGQLRYQNVTMGEIV  115 (378)
Q Consensus        48 v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~------~~l~~-----~l~s~~~d~~i~iwd~~~~~~~  115 (378)
                      +++|...++|.+|+++-.-..|.+.| .+|..+..+.+....      ...+|     ++-.+..++.|.++|-..... 
T Consensus       146 iNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN~~~~~-  224 (299)
T PF14269_consen  146 INSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDNANSDF-  224 (299)
T ss_pred             eeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcCCCCCC-
Confidence            66888888999999998888999999 788888888776221      11333     444556788999998632111 


Q ss_pred             EEEecCCCCeeEEEEcCCCCEEE--EEcCCCeeeecCCCEEEEEEecCCCEEEEEECCCeEEEEE
Q 046394          116 GNFWTGLGRTDVIRVNPFNGVVS--LGHSGGTMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWD  178 (378)
Q Consensus       116 ~~~~~~~~~v~~~~~s~~~~~l~--~~~~d~~~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd  178 (378)
                        .......-.-+.+.+....+.  ....+.........--++..-|+|+.|++=+..+.+.=++
T Consensus       225 --~~~~~s~~~v~~ld~~~~~~~~~~~~~~~~~~~~s~~~G~~Q~L~nGn~li~~g~~g~~~E~~  287 (299)
T PF14269_consen  225 --NGTEPSRGLVLELDPETMTVTLVREYSDHPDGFYSPSQGSAQRLPNGNVLIGWGNNGRISEFT  287 (299)
T ss_pred             --CCCcCCCceEEEEECCCCEEEEEEEeecCCCcccccCCCcceECCCCCEEEecCCCceEEEEC
Confidence              111112222333334332211  1111000001111112355678888888877777665554

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=86.96  E-value=10  Score=32.66  Aligned_cols=23  Identities=9%  Similarity=0.020  Sum_probs=13.6

Q ss_pred             CCeeEEEEcCCCCEEEEEcCCCe
Q 046394          123 GRTDVIRVNPFNGVVSLGHSGGT  145 (378)
Q Consensus       123 ~~v~~~~~s~~~~~l~~~~~d~~  145 (378)
                      ..+++++|+|+.+.|++..+...
T Consensus        86 ~nvS~LTynp~~rtLFav~n~p~  108 (316)
T COG3204          86 ANVSSLTYNPDTRTLFAVTNKPA  108 (316)
T ss_pred             ccccceeeCCCcceEEEecCCCc
Confidence            44666777776666555544443

>PHA02713 hypothetical protein; Provisional

Probab=86.86  E-value=25  Score=34.11  Aligned_cols=58  Identities=10%  Similarity=-0.018  Sum_probs=30.9

Q ss_pred             CCCEEEEEeCC------CcEEEEeCCCCeEEeeccCCC---e-eEEEE---EEEEEeCCC-----eEEEEEcCCCc
Q 046394           56 SGRYMAAAGCK------GYPYFYNRDGTELHCSKEHGE---V-LKLQF---LLASINKLG-----QLRYQNVTMGE  113 (378)
Q Consensus        56 ~g~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~---~-~~l~~---~l~s~~~d~-----~i~iwd~~~~~  113 (378)
                      ++..+++||.+      ..+..||.....-..+..-..   . ....+   +.+.||.++     ++..||..+.+
T Consensus       303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~  378 (557)
T PHA02713        303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDK  378 (557)
T ss_pred             CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCe
Confidence            56666777753      247788854443222221111   1 22223   666677653     47889987654

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=86.83  E-value=25  Score=32.30  Aligned_cols=127  Identities=13%  Similarity=0.072  Sum_probs=65.9

Q ss_pred             ceEEEEcCCCCEEEEEeCCCcEEE-EeCCCC--eEEeeccCCCeeEEEE----EEEEEeCCCeEEEEEcCCCcE-----E
Q 046394           48 PYTLDFTSSGRYMAAAGCKGYPYF-YNRDGT--ELHCSKEHGEVLKLQF----LLASINKLGQLRYQNVTMGEI-----V  115 (378)
Q Consensus        48 v~~~~~sp~g~~l~~~~~dg~i~i-wd~~~~--~~~~~~~~~~~~~l~~----~l~s~~~d~~i~iwd~~~~~~-----~  115 (378)
                      ...+..+++|.+++++. .|.+.. ||.-+.  ...........+.+.|    -++.++.+|.+. +....++.     .
T Consensus       241 f~~v~~~~dG~~~~vg~-~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~~G~l~-~S~d~G~~~~~~~f  318 (398)
T PLN00033        241 FSTVNRSPDGDYVAVSS-RGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLTRGGGLY-VSKGTGLTEEDFDF  318 (398)
T ss_pred             eeeEEEcCCCCEEEEEC-CccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEeCCceEE-EecCCCCcccccce
Confidence            34456677877776664 344443 442221  2222222333366766    344444666653 33344432     2


Q ss_pred             EEEec--CCCCeeEEEEcCCCCEEEEEcCCCe-----------e----eecCCCEEEEEEecCCCEEEEEECCCeEEEE
Q 046394          116 GNFWT--GLGRTDVIRVNPFNGVVSLGHSGGT-----------M----LCHQGPVSALAFHPNGHLMATSGKDCKIKIW  177 (378)
Q Consensus       116 ~~~~~--~~~~v~~~~~s~~~~~l~~~~~d~~-----------~----~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iw  177 (378)
                      .....  ....+..+.|.+++..+++|.....           .    ..-...++.+.|.++++.+++| .+|.|.-|
T Consensus       319 ~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G~il~~  396 (398)
T PLN00033        319 EEADIKSRGFGILDVGYRSKKEAWAAGGSGILLRSTDGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDGVLLRY  396 (398)
T ss_pred             eecccCCCCcceEEEEEcCCCcEEEEECCCcEEEeCCCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCcEEEEe
Confidence            22221  1234788889988887777655333           1    1113457788887766555544 56665544

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=86.02  E-value=0.73  Score=45.32  Aligned_cols=66  Identities=17%  Similarity=0.183  Sum_probs=43.7

Q ss_pred             CceEEEEcC---CCCEEEEEeCCCcEEEEeCCCCeEEeeccCCCe-eEEEE------EEEEEeCCCeEEEEEcCCC
Q 046394           47 GPYTLDFTS---SGRYMAAAGCKGYPYFYNRDGTELHCSKEHGEV-LKLQF------LLASINKLGQLRYQNVTMG  112 (378)
Q Consensus        47 ~v~~~~~sp---~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~l~~------~l~s~~~d~~i~iwd~~~~  112 (378)
                      .+.-+.|+|   +..++..+-.+|.|++.+.+......+++|... +.++|      .++..+-||++..|-+..|
T Consensus       182 ~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG  257 (1283)
T KOG1916|consen  182 DPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDG  257 (1283)
T ss_pred             CcceeeecccccccceeeeccCCCceeEeeechHHHHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCC
Confidence            345566655   556777777788888877555444566777754 77766      5556666777777766554

>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]

Probab=86.00  E-value=50  Score=34.90  Aligned_cols=20  Identities=15%  Similarity=0.036  Sum_probs=13.4

Q ss_pred             EEEEEeCCCeEEEEEcCCCc
Q 046394           94 LLASINKLGQLRYQNVTMGE  113 (378)
Q Consensus        94 ~l~s~~~d~~i~iwd~~~~~  113 (378)
                      ++|..--||++.+=|..+.+
T Consensus       411 y~AvsPvdgtlyvSdp~s~q  430 (1899)
T KOG4659|consen  411 YIAVSPVDGTLYVSDPLSKQ  430 (1899)
T ss_pred             EEEecCcCceEEecCCCcce
Confidence            67777778887776655444

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=85.79  E-value=20  Score=35.82  Aligned_cols=86  Identities=15%  Similarity=0.263  Sum_probs=46.5

Q ss_pred             CCEEEEEEecCCCEEEEEECCCeEEEEEcCC-ceeeeee---cCCceEEEEecCCCccccCCCCCceEEEeeccCCccee
Q 046394          151 GPVSALAFHPNGHLMATSGKDCKIKIWDLRK-YEVLQTL---PGHAKTLDFSRKDSGDFSGSHNYNRYMGYSMVKGYQIG  226 (378)
Q Consensus       151 ~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~-~~~~~~~---~~~i~~~~~sp~g~~~~~~~~~~~~~~~~~~~~~~~v~  226 (378)
                      ..|..|.++|+|.+++..|..| |.|-.+.. .-.-..+   ...+.|-++.=+.           .++  ...+...|.
T Consensus        85 f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~-----------~~~--~~~~~~~i~  150 (717)
T PF10168_consen   85 FEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDE-----------RFF--TSNSSLEIK  150 (717)
T ss_pred             eeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEech-----------hhc--cCCCCceEE
Confidence            4688899999999999998766 44444432 1101111   1112222211111           111  111445688


Q ss_pred             eeEEcCCC---CeEEEecCCCeEEEEE
Q 046394          227 KVSFRPYE---DVLGIGHSMGVSGILI  250 (378)
Q Consensus       227 ~~~~sp~g---~~l~~~~~~g~~~~~~  250 (378)
                      .+.|+|.+   ..|++=.+|+.+++|.
T Consensus       151 qv~WhP~s~~~~~l~vLtsdn~lR~y~  177 (717)
T PF10168_consen  151 QVRWHPWSESDSHLVVLTSDNTLRLYD  177 (717)
T ss_pred             EEEEcCCCCCCCeEEEEecCCEEEEEe
Confidence            89999874   5666666666555554

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=85.56  E-value=3.4  Score=37.70  Aligned_cols=142  Identities=16%  Similarity=0.124  Sum_probs=79.4

Q ss_pred             eecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEe--e-ccCCC-----ee-EE-----EEEEEEEeCCCeEEE
Q 046394           41 IMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTELHC--S-KEHGE-----VL-KL-----QFLLASINKLGQLRY  106 (378)
Q Consensus        41 l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~--~-~~~~~-----~~-~l-----~~~l~s~~~d~~i~i  106 (378)
                      +......|..+-..|||+.+.+-+. ..+.|++...+.+..  + ....+     ++ .+     .|-+..++.||.|.-
T Consensus       216 L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQ  294 (733)
T COG4590         216 LSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQ  294 (733)
T ss_pred             cCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceee
Confidence            5555567888999999998776654 578888854443322  1 11111     11 11     115667788888876


Q ss_pred             E-EcCC-CcE----EEEEecCCCCeeEEEEcCCCCEEEEEcCCCee-------------eecCCCEEEEEEecCCCEEEE
Q 046394          107 Q-NVTM-GEI----VGNFWTGLGRTDVIRVNPFNGVVSLGHSGGTM-------------LCHQGPVSALAFHPNGHLMAT  167 (378)
Q Consensus       107 w-d~~~-~~~----~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~~-------------~~h~~~v~~~~~sp~g~~l~t  167 (378)
                      | |++. +++    ++.+......+..+.-....+-+++-+.+|.+             ..--..+..+++||.+.++++
T Consensus       295 WFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~~~~~~~~~Sp~~~~Ll~  374 (733)
T COG4590         295 WFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAYQAPQLVAMSPNQAYLLS  374 (733)
T ss_pred             eeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhhhhcCcceeeeCcccchhee
Confidence            6 5543 221    22333222333333322233445555555551             111234567889999988877


Q ss_pred             EECCCeEEEEEcCCcee
Q 046394          168 SGKDCKIKIWDLRKYEV  184 (378)
Q Consensus       168 ~~~d~~i~iwd~~~~~~  184 (378)
                      -. .|.|+++.+.+..+
T Consensus       375 e~-~gki~~~~l~Nr~P  390 (733)
T COG4590         375 ED-QGKIRLAQLENRNP  390 (733)
T ss_pred             ec-CCceEEEEecCCCC
Confidence            54 45688888876443

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=85.54  E-value=2.1  Score=41.34  Aligned_cols=38  Identities=24%  Similarity=0.480  Sum_probs=29.0

Q ss_pred             CCEEEEEEec----CCCEEEEEECCCeEEEEEcCCceeeeee
Q 046394          151 GPVSALAFHP----NGHLMATSGKDCKIKIWDLRKYEVLQTL  188 (378)
Q Consensus       151 ~~v~~~~~sp----~g~~l~t~~~d~~i~iwd~~~~~~~~~~  188 (378)
                      +.+.++++++    +..++++.+.|++||+||+.++.++.+.
T Consensus       215 ~~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~  256 (547)
T PF11715_consen  215 SVAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATI  256 (547)
T ss_dssp             --EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred             CccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence            3455666666    6789999999999999999999997665

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=85.31  E-value=29  Score=31.54  Aligned_cols=29  Identities=28%  Similarity=0.427  Sum_probs=21.9

Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCCeEEeec
Q 046394           55 SSGRYMAAAGCKGYPYFYNRDGTELHCSK   83 (378)
Q Consensus        55 p~g~~l~~~~~dg~i~iwd~~~~~~~~~~   83 (378)
                      |...+|+....++-+.+||++|+.+..+.
T Consensus        66 p~kSlIigTdK~~GL~VYdL~Gk~lq~~~   94 (381)
T PF02333_consen   66 PAKSLIIGTDKKGGLYVYDLDGKELQSLP   94 (381)
T ss_dssp             GGG-EEEEEETTTEEEEEETTS-EEEEE-
T ss_pred             cccceEEEEeCCCCEEEEcCCCcEEEeec
Confidence            34467887788889999999999998875

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=83.74  E-value=13  Score=38.71  Aligned_cols=30  Identities=23%  Similarity=0.377  Sum_probs=25.9

Q ss_pred             CceEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 046394           47 GPYTLDFTSSGRYMAAAGCKGYPYFYNRDG   76 (378)
Q Consensus        47 ~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~   76 (378)
                      ....++|+|.-.++|.|...|.|.+|...+
T Consensus        37 ~~~~~afD~~q~llai~t~tg~i~~yg~~~   66 (993)
T KOG1983|consen   37 TPSALAFDPTQGLLAIGTRTGAIKIYGQPG   66 (993)
T ss_pred             CCcceeeccccceEEEEEecccEEEecccc
Confidence            456889999999999999999999998543

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=82.97  E-value=23  Score=30.74  Aligned_cols=61  Identities=8%  Similarity=-0.143  Sum_probs=41.8

Q ss_pred             cceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEe------CCCcEEEEeCCCCeEEeecc
Q 046394           24 EAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAG------CKGYPYFYNRDGTELHCSKE   84 (378)
Q Consensus        24 ~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~------~dg~i~iwd~~~~~~~~~~~   84 (378)
                      -.-+++||..+.+-..--.+=.+.|+.|.|..+...++.|.      ....+..||........+..
T Consensus        15 C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~   81 (281)
T PF12768_consen   15 CPGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGG   81 (281)
T ss_pred             CCEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCC
Confidence            34578899877776544444456799999986666666663      34568889977766656655

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=82.75  E-value=20  Score=28.56  Aligned_cols=32  Identities=19%  Similarity=0.207  Sum_probs=24.3

Q ss_pred             cceeeeEEcCCC------CeEEEecCCCeEEEEEcCCC
Q 046394          223 YQIGKVSFRPYE------DVLGIGHSMGVSGILIPGSG  254 (378)
Q Consensus       223 ~~v~~~~~sp~g------~~l~~~~~~g~~~~~~~~s~  254 (378)
                      ..|.+++|||-|      -+||+-+.+|.+.+|.....
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~  123 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGN  123 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCC
Confidence            368899999965      36788888888777776543

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=81.63  E-value=5.3  Score=22.41  Aligned_cols=19  Identities=21%  Similarity=0.440  Sum_probs=11.1

Q ss_pred             CCEEEEEEecCCCEEEEEE
Q 046394          151 GPVSALAFHPNGHLMATSG  169 (378)
Q Consensus       151 ~~v~~~~~sp~g~~l~t~~  169 (378)
                      +.-....|||||++|+-++
T Consensus         9 ~~~~~p~~SpDGk~i~f~s   27 (39)
T PF07676_consen    9 GDDGSPAWSPDGKYIYFTS   27 (39)
T ss_dssp             SSEEEEEE-TTSSEEEEEE
T ss_pred             ccccCEEEecCCCEEEEEe
Confidence            3445667777777765444

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=81.31  E-value=11  Score=29.90  Aligned_cols=30  Identities=20%  Similarity=0.405  Sum_probs=21.3

Q ss_pred             CEEEEEEecCC------CEEEEEECCCeEEEEEcCC
Q 046394          152 PVSALAFHPNG------HLMATSGKDCKIKIWDLRK  181 (378)
Q Consensus       152 ~v~~~~~sp~g------~~l~t~~~d~~i~iwd~~~  181 (378)
                      .|.+++|||.|      -+|++.+.++.|.||....
T Consensus        87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            55666666632      2578888999999997653

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=81.27  E-value=42  Score=34.41  Aligned_cols=138  Identities=18%  Similarity=0.207  Sum_probs=70.9

Q ss_pred             eeeeeecccceeeEEeecCCC----CceEEEEcCCCC--EEEEEeC-----------CCcEEEEe--CCCCeEEeeccCC
Q 046394           26 IAREVDILSSRNQYDIMLPEL----GPYTLDFTSSGR--YMAAAGC-----------KGYPYFYN--RDGTELHCSKEHG   86 (378)
Q Consensus        26 ~i~~~d~~~~~~~~~l~~~~~----~v~~~~~sp~g~--~l~~~~~-----------dg~i~iwd--~~~~~~~~~~~~~   86 (378)
                      .+++.|..++..+.-+....+    .+..+.|+....  ++++|+.           +|.++.|+  ..|..+.-+....
T Consensus       854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~  933 (1205)
T KOG1898|consen  854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTE  933 (1205)
T ss_pred             eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccC
Confidence            477788877776655554332    455667765433  3444432           34567777  3455433332221


Q ss_pred             --C-eeEEE-E-EEEEEeCCCeEEEEEcCCCcEEEEEecC--CCCeeEEEEcCCCCEEEEEcCCCeeeecCCCEEEEEEe
Q 046394           87 --E-VLKLQ-F-LLASINKLGQLRYQNVTMGEIVGNFWTG--LGRTDVIRVNPFNGVVSLGHSGGTMLCHQGPVSALAFH  159 (378)
Q Consensus        87 --~-~~~l~-~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~d~~~~~h~~~v~~~~~s  159 (378)
                        + +.+++ | -.+-++....+++||+...+.++.....  +..|+.+++  .+..+++|.       -...|.-+.|.
T Consensus       934 ~~~~v~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt--~~~RI~VgD-------~qeSV~~~~y~ 1004 (1205)
T KOG1898|consen  934 IPGPVGAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQT--YGARIVVGD-------IQESVHFVRYR 1004 (1205)
T ss_pred             CCccceEEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEee--cceEEEEee-------ccceEEEEEEe
Confidence              1 23332 3 2233344578999999876655543322  233333333  234444442       23456666666


Q ss_pred             cCCCEEEEEECCC
Q 046394          160 PNGHLMATSGKDC  172 (378)
Q Consensus       160 p~g~~l~t~~~d~  172 (378)
                      |+++.|..-..|.
T Consensus      1005 ~~~n~l~~fadD~ 1017 (1205)
T KOG1898|consen 1005 REDNQLIVFADDP 1017 (1205)
T ss_pred             cCCCeEEEEeCCC
Confidence            7666665555443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	378
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		4e-05
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		8e-05

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/108 (25%), Positives = 50/108 (46%), Gaps = 10/108 (9%)
Query: 149 HQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHAKTL-DFSRKDSGDFSG 207
           H+ PV+ + FHP   +M ++ +D  IK+WD    +  +TL GH  ++ D S   SG    
Sbjct: 107 HRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLA 166
Query: 208 SHNYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILIPGSGE 255
           S + +  +     +G++  +            GH   VS + I  +G+
Sbjct: 167 SCSADMTIKLWDFQGFECIRTMH---------GHDHNVSSVSIMPNGD 205

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 145 TMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHAKTL 195
           T+  H   V+ +AF P+G  +A++  D  +K+W+ R  ++LQTL GH+ ++
Sbjct: 257 TLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSV 306

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	378
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.98
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.98
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.97
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.97
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.97
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.97
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.97
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.97
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.97
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.97
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.97
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.97
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.97
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.97
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.97
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.97
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.97
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.97
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.97
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.97
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.97
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.97
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.97
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.97
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.97
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.97
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.97
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.97
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.97
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.96
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.96
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.96
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.96
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.96
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.96
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.96
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.96
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.96
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.96
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.96
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.96
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.96
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.96
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.96
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.96
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.95
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.95
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.95
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.95
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.95
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.95
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.95
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.95
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.95
3jro_A	753	Fusion protein of protein transport protein SEC13	99.95
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.95
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.95
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.95
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.95
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.95
2pm7_B	297	Protein transport protein SEC13, protein transport	99.95
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.95
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.94
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.94
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.94
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.94
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.94
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.93
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.93
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.93
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.93
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.93
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.93
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.93
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.93
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.93
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.93
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.93
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.92
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.92
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.92
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.92
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.92
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.92
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.92
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.91
3jro_A	753	Fusion protein of protein transport protein SEC13	99.91
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.9
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.89
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.89
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.87
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.87
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.86
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.86
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.86
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.84
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.84
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.82
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.8
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.79
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.79
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.79
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.77
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.77
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.76
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.76
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.76
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.75
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.75
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.74
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.73
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.73
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.73
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.72
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.72
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.7
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.7
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.69
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.69
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.69
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.69
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.67
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.67
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.66
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.61
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.6
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.6
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.6
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.6
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.57
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.57
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.54
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.53
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.52
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.51
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.5
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.48
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.47
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.45
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.45
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.45
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.45
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.44
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.44
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.41
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.39
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.38
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.37
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.36
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.31
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.3
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.29
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.25
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.24
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.24
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.24
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.23
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.22
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.22
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.2
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.2
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.18
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.18
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.16
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.16
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.16
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.15
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.13
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.11
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.11
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.1
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.1
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.08
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.03
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.0
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.99
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.97
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.95
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	98.94
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.94
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	98.92
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.89
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.86
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.83
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.79
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.79
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.78
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	98.77
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.77
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.76
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.71
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.7
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.69
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.65
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.65
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.65
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.63
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.63
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	98.62
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.6
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.6
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.58
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.53
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.52
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.52
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.49
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.44
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.42
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.41
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.37
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.37
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.37
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.29
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.29
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.27
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.24
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.16
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.15
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.15
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.15
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.11
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.98
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	97.95
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	97.94
3v65_B	386	Low-density lipoprotein receptor-related protein;	97.91
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	97.91
4a2l_A	795	BT_4663, two-component system sensor histidine kin	97.9
4a2l_A	795	BT_4663, two-component system sensor histidine kin	97.8
2p4o_A	306	Hypothetical protein; putative lactonase, structur	97.78
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.78
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	97.77
3v9f_A	781	Two-component system sensor histidine kinase/RESP	97.72
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.72
3v9f_A	781	Two-component system sensor histidine kinase/RESP	97.7
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.69
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.66
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.6
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	97.58
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	97.56
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	97.54
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.49
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.27
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.24
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.2
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.14
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.11
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.11
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.09
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.08
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.06
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.0
3kya_A	496	Putative phosphatase; structural genomics, joint c	96.97
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	96.89
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	96.84
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.8
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.8
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	96.79
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	96.76
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	96.7
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	96.65
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	96.44
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	96.21
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	96.09
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	96.03
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	96.0
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	95.69
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	95.61
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	95.59
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	95.51
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	95.35
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	95.27
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	95.13
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	94.94
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	94.9
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	94.88
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	94.43
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	94.41
3kya_A	496	Putative phosphatase; structural genomics, joint c	94.36
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	94.34
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	94.19
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	94.18
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	93.62
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	93.6
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	93.55
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	93.02
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	92.49
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	92.48
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	92.45
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	92.42
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	92.34
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	92.27
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	92.11
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	91.26
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	91.01
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	90.22
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	90.18
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	90.11
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	89.04
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	88.46
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	87.93
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	87.59
2zux_A	591	YESW protein; beta-propeller, lyase, rhamnose comp	87.54
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	86.96
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	84.33
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	84.28
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	81.98
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	81.34
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	80.36
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	80.04

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=1e-35  Score=266.05  Aligned_cols=234  Identities=16%  Similarity=0.165  Sum_probs=209.5

Q ss_pred             ceeeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCC-----CeEEeeccCCCe-
Q 046394           15 VEKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDG-----TELHCSKEHGEV-   88 (378)
Q Consensus        15 ~~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~-----~~~~~~~~~~~~-   88 (378)
                      ....+..+.|+.|++||+.++..+..+..|...|.+++|+|+|++|++|+.|+.|++|+...     .....+.+|.+. 
T Consensus        67 ~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v  146 (340)
T 1got_B           67 SRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYL  146 (340)
T ss_dssp             SSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCE
T ss_pred             CCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccE
Confidence            34567778899999999999999999999999999999999999999999999999999543     245667888876 


Q ss_pred             eEEEE----EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe--------------eeecC
Q 046394           89 LKLQF----LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT--------------MLCHQ  150 (378)
Q Consensus        89 ~~l~~----~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~--------------~~~h~  150 (378)
                      .++.|    .+++++.|++|++||+.+++.+..+..|.+.|.+++|+|++.+|++|+.|+.              +.+|.
T Consensus       147 ~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~  226 (340)
T 1got_B          147 SCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHE  226 (340)
T ss_dssp             EEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCS
T ss_pred             EEEEECCCCcEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCc
Confidence            88888    8999999999999999999999999999999999999999999999999987              56799


Q ss_pred             CCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee-c----CCceEEEEecCCCc----------cccCCCCCceEE
Q 046394          151 GPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL-P----GHAKTLDFSRKDSG----------DFSGSHNYNRYM  215 (378)
Q Consensus       151 ~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~-~----~~i~~~~~sp~g~~----------~~~~~~~~~~~~  215 (378)
                      ..|.+++|+|++++|++++.|++|++||+++++.+..+ +    ..+.+++|+|+|.+          .+|+......+.
T Consensus       227 ~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~  306 (340)
T 1got_B          227 SDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAG  306 (340)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred             CCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEee
Confidence            99999999999999999999999999999999888777 2    36899999999875          678877778888


Q ss_pred             EeeccCCcceeeeEEcCCCCeEEEecCCCeEEEE
Q 046394          216 GYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGIL  249 (378)
Q Consensus       216 ~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~  249 (378)
                      .+.+ |..+|++++|+|+|.+|++|+.||.+.+|
T Consensus       307 ~~~~-h~~~v~~~~~s~dg~~l~s~s~D~~i~iW  339 (340)
T 1got_B          307 VLAG-HDNRVSCLGVTDDGMAVATGSWDSFLKIW  339 (340)
T ss_dssp             EEEC-CSSCEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred             Eeec-CCCcEEEEEEcCCCCEEEEEcCCccEEec
Confidence            8888 89999999999999988888888866655

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=1.2e-35  Score=272.26  Aligned_cols=233  Identities=13%  Similarity=0.135  Sum_probs=211.4

Q ss_pred             eeeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeC-CCCeEEeeccCCCe-eEEEE
Q 046394           16 EKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNR-DGTELHCSKEHGEV-LKLQF   93 (378)
Q Consensus        16 ~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~-~~l~~   93 (378)
                      ...+..+.|+.|++||+.+++....+.+|...|.+++|+|+|.+|++|+.||.|++||. .+..+..+.+|... .+++|
T Consensus       121 ~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~  200 (410)
T 1vyh_C          121 SVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSI  200 (410)
T ss_dssp             SEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEE
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEE
Confidence            45667778999999999999999999999999999999999999999999999999995 55778889999876 99999


Q ss_pred             -----EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe--------------eeecCCCEE
Q 046394           94 -----LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT--------------MLCHQGPVS  154 (378)
Q Consensus        94 -----~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~--------------~~~h~~~v~  154 (378)
                           ++++|+.|++|++||+.++.++..+.+|...+.++.|+|++.+|++++.|+.              +.+|...|.
T Consensus       201 ~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~  280 (410)
T 1vyh_C          201 MPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVE  280 (410)
T ss_dssp             CSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEE
T ss_pred             eCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEE
Confidence                 8999999999999999999999999999999999999999999999999987              567999999


Q ss_pred             EEEEecC--------------------CCEEEEEECCCeEEEEEcCCceeeeee--c-CCceEEEEecCCCc--------
Q 046394          155 ALAFHPN--------------------GHLMATSGKDCKIKIWDLRKYEVLQTL--P-GHAKTLDFSRKDSG--------  203 (378)
Q Consensus       155 ~~~~sp~--------------------g~~l~t~~~d~~i~iwd~~~~~~~~~~--~-~~i~~~~~sp~g~~--------  203 (378)
                      +++|+|+                    |.+|++|+.|++|++||++++.++.++  | ..|++++|+|+|.+        
T Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~  360 (410)
T 1vyh_C          281 CISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDK  360 (410)
T ss_dssp             EEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTT
T ss_pred             EEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCC
Confidence            9999996                    678999999999999999999999888  3 67999999998875        


Q ss_pred             --cccCCCCCceEEEeeccCCcceeeeEEcCCCCeEEEecCCCeEEEE
Q 046394          204 --DFSGSHNYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGIL  249 (378)
Q Consensus       204 --~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~  249 (378)
                        .+|+.....++..+.+ |...|++++|+|++.+|++|+.||.+.+|
T Consensus       361 ~i~vwd~~~~~~~~~~~~-h~~~v~~l~~~~~~~~l~sgs~D~~i~vW  407 (410)
T 1vyh_C          361 TLRVWDYKNKRCMKTLNA-HEHFVTSLDFHKTAPYVVTGSVDQTVKVW  407 (410)
T ss_dssp             EEEEECCTTSCCCEEEEC-CSSCEEEEEECSSSSCEEEEETTSEEEEE
T ss_pred             eEEEEECCCCceEEEEcC-CCCcEEEEEEcCCCCEEEEEeCCCcEEEE
Confidence              7788888888888888 88999999999999888888877766555

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.2e-34  Score=256.94  Aligned_cols=234  Identities=17%  Similarity=0.160  Sum_probs=207.9

Q ss_pred             eeeEEEeccceeeeeeccccee--eEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeeccCCCe-eEE
Q 046394           16 EKTWRIKQEAIAREVDILSSRN--QYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKEHGEV-LKL   91 (378)
Q Consensus        16 ~~~~~~~~~~~i~~~d~~~~~~--~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~-~~l   91 (378)
                      ...+..+.|+.+++||+.++..  ...+.+|...|.+++|+|++.++++|+.|+.|++|| .++..+..+..|... .++
T Consensus        49 ~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~  128 (321)
T 3ow8_A           49 ETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTL  128 (321)
T ss_dssp             CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCE
T ss_pred             CEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEE
Confidence            3567778899999999977653  457889999999999999999999999999999999 567777888887765 889


Q ss_pred             EE-----EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe--------------eeecCCC
Q 046394           92 QF-----LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT--------------MLCHQGP  152 (378)
Q Consensus        92 ~~-----~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~--------------~~~h~~~  152 (378)
                      +|     +|++++.|+.|++||+.+++....+..+...+.+++|+|++++|++++.|+.              +.+|..+
T Consensus       129 ~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~  208 (321)
T 3ow8_A          129 AFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMP  208 (321)
T ss_dssp             EECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC
T ss_pred             EECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCc
Confidence            99     9999999999999999999999999989899999999999999999999987              5679999


Q ss_pred             EEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee--c-CCceEEEEecCCCc----------cccCCCCCceEEEeec
Q 046394          153 VSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL--P-GHAKTLDFSRKDSG----------DFSGSHNYNRYMGYSM  219 (378)
Q Consensus       153 v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~--~-~~i~~~~~sp~g~~----------~~~~~~~~~~~~~~~~  219 (378)
                      |.+++|+|++++|++++.|++|+|||++++.++..+  + ..|.+++|+|+|.+          .+|+..+..++..+.+
T Consensus       209 v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~  288 (321)
T 3ow8_A          209 IRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFD  288 (321)
T ss_dssp             CCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred             eeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcC
Confidence            999999999999999999999999999999988888  3 67999999998764          7888888888888887


Q ss_pred             cCCcceeeeEEcCCCCeEEEecCCCeEEEEE
Q 046394          220 VKGYQIGKVSFRPYEDVLGIGHSMGVSGILI  250 (378)
Q Consensus       220 ~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~  250 (378)
                       |...|++++|+|+|.+|++++.||.+.+|.
T Consensus       289 -h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd  318 (321)
T 3ow8_A          289 -HQDQVWGVKYNGNGSKIVSVGDDQEIHIYD  318 (321)
T ss_dssp             -CSSCEEEEEECTTSSEEEEEETTCCEEEEE
T ss_pred             -CCCcEEEEEECCCCCEEEEEeCCCeEEEEe
Confidence             888999999999998888887777655553

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=5.4e-34  Score=252.59  Aligned_cols=235  Identities=13%  Similarity=0.133  Sum_probs=196.8

Q ss_pred             ceeeEEEeccceeeeeeccc-----ceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeeccCCCe
Q 046394           15 VEKTWRIKQEAIAREVDILS-----SRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKEHGEV   88 (378)
Q Consensus        15 ~~~~~~~~~~~~i~~~d~~~-----~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~   88 (378)
                      ....+..+.|+.|++||+.+     +..+..+.+|...|.+++|+|+|.+|++|+.|++|++|| .++..+..+.+|...
T Consensus        30 ~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~  109 (319)
T 3frx_A           30 PNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSD  109 (319)
T ss_dssp             TTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSC
T ss_pred             ccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCc
Confidence            34567778889999999864     345678899999999999999999999999999999999 567778889999876


Q ss_pred             -eEEEE-----EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCC------CCEEEEEcCCCe-----------
Q 046394           89 -LKLQF-----LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPF------NGVVSLGHSGGT-----------  145 (378)
Q Consensus        89 -~~l~~-----~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~------~~~l~~~~~d~~-----------  145 (378)
                       .+++|     ++++++.|++|++||+. +.++..+.+|...+.+++|+|.      +..|++++.|+.           
T Consensus       110 v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~  188 (319)
T 3frx_A          110 VMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI  188 (319)
T ss_dssp             EEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEE
T ss_pred             EEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchh
Confidence             99999     89999999999999995 6677888899999999999995      448999999987           


Q ss_pred             ---eeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee--cCCceEEEEecCCCcc---------ccCCCCC
Q 046394          146 ---MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL--PGHAKTLDFSRKDSGD---------FSGSHNY  211 (378)
Q Consensus       146 ---~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~--~~~i~~~~~sp~g~~~---------~~~~~~~  211 (378)
                         +.+|...|.+++|+|+|++|++++.|++|+|||+.+++++..+  +..+.+++|+|+|.+.         +|+....
T Consensus       189 ~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~i~v~~~~~~  268 (319)
T 3frx_A          189 EADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQ  268 (319)
T ss_dssp             EEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECCSCEEEEEECSSSSEEEEEETTEEEEEEETTE
T ss_pred             heeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEcCCCCEEEEEcCCCcEEEEeCcC
Confidence               5679999999999999999999999999999999999999888  6889999999999863         3333333


Q ss_pred             ceEEEeec-------cCCcceeeeEEcCCCCeEEEecCCCeEEEEE
Q 046394          212 NRYMGYSM-------VKGYQIGKVSFRPYEDVLGIGHSMGVSGILI  250 (378)
Q Consensus       212 ~~~~~~~~-------~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~  250 (378)
                      ..+..+..       .+...+.+++|+|||++|++|+.||.+.+|-
T Consensus       269 ~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd  314 (319)
T 3frx_A          269 YLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQ  314 (319)
T ss_dssp             EEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             eeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEE
Confidence            22322221       1345688999999998888888887665553

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=8.5e-34  Score=254.96  Aligned_cols=234  Identities=14%  Similarity=0.146  Sum_probs=207.1

Q ss_pred             ceeeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCC-------CeEEeeccCCC
Q 046394           15 VEKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDG-------TELHCSKEHGE   87 (378)
Q Consensus        15 ~~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~-------~~~~~~~~~~~   87 (378)
                      ....+..+.|+.|++||..++.....+..|...|.+++|+|+|.+|++|+.|+.+++|+...       .....+.+|..
T Consensus        76 ~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~  155 (354)
T 2pbi_B           76 KRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTN  155 (354)
T ss_dssp             SSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSS
T ss_pred             CCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCC
Confidence            35677788899999999999999999999999999999999999999999999999999532       23466778887


Q ss_pred             e-eEEEE-----EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcC--CCCEEEEEcCCCe--------------
Q 046394           88 V-LKLQF-----LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNP--FNGVVSLGHSGGT--------------  145 (378)
Q Consensus        88 ~-~~l~~-----~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~d~~--------------  145 (378)
                      . .++.|     .|++++.|++|++||+.+++++..+.+|...|.+++|+|  ++.+|++|+.|+.              
T Consensus       156 ~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~  235 (354)
T 2pbi_B          156 YLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQA  235 (354)
T ss_dssp             CEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEE
T ss_pred             cEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEE
Confidence            6 89999     899999999999999999999999999999999999988  4689999999987              


Q ss_pred             eeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee--c---CCceEEEEecCCCc----------cccCCCC
Q 046394          146 MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL--P---GHAKTLDFSRKDSG----------DFSGSHN  210 (378)
Q Consensus       146 ~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~--~---~~i~~~~~sp~g~~----------~~~~~~~  210 (378)
                      +.+|...|.+++|+|++.+|++++.|++|++||++++..+..+  +   ..+.+++|+|+|.+          .+|+...
T Consensus       236 ~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~  315 (354)
T 2pbi_B          236 FETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLK  315 (354)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             ecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCC
Confidence            5679999999999999999999999999999999998887766  2   36789999998764          6788777


Q ss_pred             CceEEEeeccCCcceeeeEEcCCCCeEEEecCCCeEEEE
Q 046394          211 YNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGIL  249 (378)
Q Consensus       211 ~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~  249 (378)
                      ...+..+.+ |...|++++|+|+|.+|++|+.||.+.+|
T Consensus       316 ~~~~~~l~~-h~~~v~~l~~spdg~~l~sgs~D~~v~vW  353 (354)
T 2pbi_B          316 GSRVSILFG-HENRVSTLRVSPDGTAFCSGSWDHTLRVW  353 (354)
T ss_dssp             CSEEEEECC-CSSCEEEEEECTTSSCEEEEETTSEEEEE
T ss_pred             CceEEEEEC-CCCcEEEEEECCCCCEEEEEcCCCCEEec
Confidence            777878877 89999999999999999999888877666

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=2.3e-34  Score=263.78  Aligned_cols=213  Identities=13%  Similarity=0.077  Sum_probs=193.6

Q ss_pred             eEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeeccCCCe-eEEEE-----EEEEEeCCCeEEEEEcC
Q 046394           38 QYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKEHGEV-LKLQF-----LLASINKLGQLRYQNVT  110 (378)
Q Consensus        38 ~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~-~~l~~-----~l~s~~~d~~i~iwd~~  110 (378)
                      ...+.+|...|++++|+|++.+|++|+.||.|+||| .++.....+.+|.+. .+++|     +|++|+.|++|++||+.
T Consensus       101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~  180 (410)
T 1vyh_C          101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ  180 (410)
T ss_dssp             SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETT
T ss_pred             eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Confidence            567889999999999999999999999999999999 567778899999876 99999     99999999999999999


Q ss_pred             CCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe--------------eeecCCCEEEEEEecCCCEEEEEECCCeEEE
Q 046394          111 MGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT--------------MLCHQGPVSALAFHPNGHLMATSGKDCKIKI  176 (378)
Q Consensus       111 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~--------------~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~i  176 (378)
                      +++++..+.+|...|.+++|+|++.+|++|+.|+.              +.+|...|.+++|+|+|.+|++++.|++|++
T Consensus       181 ~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~v  260 (410)
T 1vyh_C          181 GFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRV  260 (410)
T ss_dssp             SSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             CCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEE
Confidence            99999999999999999999999999999999997              6689999999999999999999999999999


Q ss_pred             EEcCCceeeeee---cCCceEEEEecCC--------------------C----------ccccCCCCCceEEEeeccCCc
Q 046394          177 WDLRKYEVLQTL---PGHAKTLDFSRKD--------------------S----------GDFSGSHNYNRYMGYSMVKGY  223 (378)
Q Consensus       177 wd~~~~~~~~~~---~~~i~~~~~sp~g--------------------~----------~~~~~~~~~~~~~~~~~~~~~  223 (378)
                      ||+.++.+...+   ...+.+++|+|++                    .          ..+|+.....++..+.+ |..
T Consensus       261 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~-h~~  339 (410)
T 1vyh_C          261 WVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVG-HDN  339 (410)
T ss_dssp             EETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEEC-CSS
T ss_pred             EECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEEC-CCC
Confidence            999999988888   3678999999862                    2          36788888888888888 889


Q ss_pred             ceeeeEEcCCCCeEEEecCCCeEEEEEc
Q 046394          224 QIGKVSFRPYEDVLGIGHSMGVSGILIP  251 (378)
Q Consensus       224 ~v~~~~~sp~g~~l~~~~~~g~~~~~~~  251 (378)
                      .|+++.|+|+|.+|++|+.||.+.+|..
T Consensus       340 ~v~~v~~~~~g~~l~s~s~D~~i~vwd~  367 (410)
T 1vyh_C          340 WVRGVLFHSGGKFILSCADDKTLRVWDY  367 (410)
T ss_dssp             CEEEEEECSSSSCEEEEETTTEEEEECC
T ss_pred             cEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence            9999999999999999999987776643

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=1.8e-34  Score=261.91  Aligned_cols=236  Identities=16%  Similarity=0.114  Sum_probs=201.8

Q ss_pred             ceeeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCC--------CeEEeeccCC
Q 046394           15 VEKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDG--------TELHCSKEHG   86 (378)
Q Consensus        15 ~~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~--------~~~~~~~~~~   86 (378)
                      ....+..+.|+.|++||+.+++....+..|...|.+++|+|+|++|++|+.|+.|++||+..        .....+.+|.
T Consensus        78 ~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~  157 (380)
T 3iz6_a           78 KNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHK  157 (380)
T ss_dssp             SSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCS
T ss_pred             CCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCC
Confidence            34577788899999999999999999999999999999999999999999999999999542        1235677888


Q ss_pred             Ce-eEEEE------EEEEEeCCCeEEEEEcCCCcEEEEE-----ecCCCCeeEEEEcC-CCCEEEEEcCCCe--------
Q 046394           87 EV-LKLQF------LLASINKLGQLRYQNVTMGEIVGNF-----WTGLGRTDVIRVNP-FNGVVSLGHSGGT--------  145 (378)
Q Consensus        87 ~~-~~l~~------~l~s~~~d~~i~iwd~~~~~~~~~~-----~~~~~~v~~~~~s~-~~~~l~~~~~d~~--------  145 (378)
                      +. .++.|      .|++|+.|++|++||+.+++.+..+     .+|...|.+++|+| ++.+|++|+.|+.        
T Consensus       158 ~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~  237 (380)
T 3iz6_a          158 GYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRI  237 (380)
T ss_dssp             SCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTT
T ss_pred             cceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCC
Confidence            75 77777      6999999999999999999998887     56788999999987 7899999999987        


Q ss_pred             -------eeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee--c--------CCceEEEEecCCCc-----
Q 046394          146 -------MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL--P--------GHAKTLDFSRKDSG-----  203 (378)
Q Consensus       146 -------~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~--~--------~~i~~~~~sp~g~~-----  203 (378)
                             +.+|.+.|.+++|+|+|++|++++.|++|+|||++++.++..+  +        ..+++++|+|+|.+     
T Consensus       238 ~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~  317 (380)
T 3iz6_a          238 TSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGY  317 (380)
T ss_dssp             TCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEEC
T ss_pred             CCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEE
Confidence                   5679999999999999999999999999999999999988777  1        13799999998875     


Q ss_pred             -----cccCCCCCceEEEe----eccCCcceeeeEEcCCCCeEEEecCCCeEEEEEc
Q 046394          204 -----DFSGSHNYNRYMGY----SMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILIP  251 (378)
Q Consensus       204 -----~~~~~~~~~~~~~~----~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~~  251 (378)
                           .+|+......+..+    .+ |...|++++|+|+|.+|++|+.||.+.+|..
T Consensus       318 ~dg~i~vwd~~~~~~~~~~~~~~~~-h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~  373 (380)
T 3iz6_a          318 SNGDCYVWDTLLAEMVLNLGTLQNS-HEGRISCLGLSSDGSALCTGSWDKNLKIWAF  373 (380)
T ss_dssp             TTSCEEEEETTTCCEEEEECCSCSS-CCCCCCEEEECSSSSEEEEECTTSCEEEEEC
T ss_pred             CCCCEEEEECCCCceEEEEecccCC-CCCceEEEEECCCCCEEEEeeCCCCEEEEec
Confidence                 56776666655554    34 8889999999999988888887776666643

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=5e-33  Score=244.65  Aligned_cols=231  Identities=13%  Similarity=0.077  Sum_probs=204.4

Q ss_pred             eeeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeeccCCCe-eEEEE
Q 046394           16 EKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKEHGEV-LKLQF   93 (378)
Q Consensus        16 ~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~-~~l~~   93 (378)
                      ...+....|+.+++||+.++..+..+..|...|.+++|+|++++|++|+.|+.|++|| .++..+..+.+|.+. .+++|
T Consensus        26 ~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~  105 (304)
T 2ynn_A           26 PWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAV  105 (304)
T ss_dssp             SEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE
T ss_pred             CEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEE
Confidence            4456677899999999999999999999999999999999999999999999999999 567888999999886 99999


Q ss_pred             -----EEEEEeCCCeEEEEEcCCC-cEEEEEecCCCCeeEEEEcC-CCCEEEEEcCCCe---------------eeecCC
Q 046394           94 -----LLASINKLGQLRYQNVTMG-EIVGNFWTGLGRTDVIRVNP-FNGVVSLGHSGGT---------------MLCHQG  151 (378)
Q Consensus        94 -----~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~---------------~~~h~~  151 (378)
                           +|++|+.|++|++||+.++ .....+.+|...|.+++|+| ++..|++|+.|+.               ..+|..
T Consensus       106 ~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~  185 (304)
T 2ynn_A          106 HPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQER  185 (304)
T ss_dssp             CSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTT
T ss_pred             cCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcC
Confidence                 9999999999999999887 45677888999999999999 6789999999998               234667


Q ss_pred             CEEEEEEec--CCCEEEEEECCCeEEEEEcCCceeeeee--c-CCceEEEEecCCCc----------cccCCCCCceEEE
Q 046394          152 PVSALAFHP--NGHLMATSGKDCKIKIWDLRKYEVLQTL--P-GHAKTLDFSRKDSG----------DFSGSHNYNRYMG  216 (378)
Q Consensus       152 ~v~~~~~sp--~g~~l~t~~~d~~i~iwd~~~~~~~~~~--~-~~i~~~~~sp~g~~----------~~~~~~~~~~~~~  216 (378)
                      .+..++|+|  ++.+|++++.|++|+|||+++++++.++  | ..+.+++|+|++.+          .+|+..+......
T Consensus       186 ~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~  265 (304)
T 2ynn_A          186 GVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKT  265 (304)
T ss_dssp             CEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEE
T ss_pred             cEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeee
Confidence            899999987  7789999999999999999999999988  3 78999999997753          7888888888888


Q ss_pred             eeccCCcceeeeEEcCCCC--eEEEecCCCeEE
Q 046394          217 YSMVKGYQIGKVSFRPYED--VLGIGHSMGVSG  247 (378)
Q Consensus       217 ~~~~~~~~v~~~~~sp~g~--~l~~~~~~g~~~  247 (378)
                      +.. +...+.+++|+|++.  ++++|+++|.+.
T Consensus       266 ~~~-~~~~~~~~~~~~~~~~~~~asg~~~g~~~  297 (304)
T 2ynn_A          266 LNV-GLERSWCIATHPTGRKNYIASGFDNGFTV  297 (304)
T ss_dssp             ECC-SSSSEEEEEECTTCGGGCEEEEETTEEEE
T ss_pred             ccC-CCccEEEEEECCCCCceEEEEecCCceEE
Confidence            877 778899999999985  689999888543

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.3e-33  Score=250.27  Aligned_cols=214  Identities=14%  Similarity=0.138  Sum_probs=186.7

Q ss_pred             eEEeecCCCCceEEEEcCC----CCEEEEEeCCCcEEEEeCCCC---eEEeeccCCCe-eEEEE-----EEEEEeCCCeE
Q 046394           38 QYDIMLPELGPYTLDFTSS----GRYMAAAGCKGYPYFYNRDGT---ELHCSKEHGEV-LKLQF-----LLASINKLGQL  104 (378)
Q Consensus        38 ~~~l~~~~~~v~~~~~sp~----g~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~-~~l~~-----~l~s~~~d~~i  104 (378)
                      ...+.+|.+.|++++|+|+    +.+|++|+.|+.|+||+....   ....+.+|... .+++|     ++++++.|++|
T Consensus        25 ~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i  104 (321)
T 3ow8_A           25 FKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHI  104 (321)
T ss_dssp             EEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEE
T ss_pred             eeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcE
Confidence            4456789999999999985    568999999999999995433   23568889875 99999     89999999999


Q ss_pred             EEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe--------------eeecCCCEEEEEEecCCCEEEEEEC
Q 046394          105 RYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT--------------MLCHQGPVSALAFHPNGHLMATSGK  170 (378)
Q Consensus       105 ~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~--------------~~~h~~~v~~~~~sp~g~~l~t~~~  170 (378)
                      ++||+.+++.+..+..+...+.+++|+|++.+|++++.++.              +..|...|.+++|+|+|++|++++.
T Consensus       105 ~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~  184 (321)
T 3ow8_A          105 RLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAI  184 (321)
T ss_dssp             EEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEET
T ss_pred             EEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcC
Confidence            99999999999999999999999999999999999999987              4567889999999999999999999


Q ss_pred             CCeEEEEEcCCceeeeee---cCCceEEEEecCCCc----------cccCCCCCceEEEeeccCCcceeeeEEcCCCCeE
Q 046394          171 DCKIKIWDLRKYEVLQTL---PGHAKTLDFSRKDSG----------DFSGSHNYNRYMGYSMVKGYQIGKVSFRPYEDVL  237 (378)
Q Consensus       171 d~~i~iwd~~~~~~~~~~---~~~i~~~~~sp~g~~----------~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l  237 (378)
                      |+.|++||+++++++..+   ..+|.+++|+|+|.+          .+|+.........+.+ |...|.+++|+|+|.+|
T Consensus       185 dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-h~~~v~~~~~sp~~~~l  263 (321)
T 3ow8_A          185 DGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSG-HASWVLNVAFCPDDTHF  263 (321)
T ss_dssp             TSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECC-CSSCEEEEEECTTSSEE
T ss_pred             CCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcC-CCCceEEEEECCCCCEE
Confidence            999999999999999888   368999999998874          6777777777888887 88899999999999999


Q ss_pred             EEecCCCeEEEEEcC
Q 046394          238 GIGHSMGVSGILIPG  252 (378)
Q Consensus       238 ~~~~~~g~~~~~~~~  252 (378)
                      ++++.||.+.+|...
T Consensus       264 ~s~s~D~~v~iwd~~  278 (321)
T 3ow8_A          264 VSSSSDKSVKVWDVG  278 (321)
T ss_dssp             EEEETTSCEEEEETT
T ss_pred             EEEeCCCcEEEEeCC
Confidence            999999877766543

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=3.8e-33  Score=245.46  Aligned_cols=214  Identities=17%  Similarity=0.128  Sum_probs=188.5

Q ss_pred             eeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeC-CCCeEEeeccCCCe-eEEEE-----EEEEEeCCCeEEEEEc
Q 046394           37 NQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNR-DGTELHCSKEHGEV-LKLQF-----LLASINKLGQLRYQNV  109 (378)
Q Consensus        37 ~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~-~~l~~-----~l~s~~~d~~i~iwd~  109 (378)
                      ....+.+|...|.+++|+|++.+|++|+.||.|++||. ++..+..+..|... .++.|     +|++|+.|++|++||+
T Consensus         5 ~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~   84 (304)
T 2ynn_A            5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNY   84 (304)
T ss_dssp             CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEET
T ss_pred             eEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEEC
Confidence            45678899999999999999999999999999999994 56778888888876 89999     9999999999999999


Q ss_pred             CCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe---------------eeecCCCEEEEEEec-CCCEEEEEECCCe
Q 046394          110 TMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT---------------MLCHQGPVSALAFHP-NGHLMATSGKDCK  173 (378)
Q Consensus       110 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~---------------~~~h~~~v~~~~~sp-~g~~l~t~~~d~~  173 (378)
                      .+++.+..+..|...|.+++|+|++.+|++|+.|+.               +.+|...|.+++|+| ++.+|++|+.|++
T Consensus        85 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~  164 (304)
T 2ynn_A           85 NTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRT  164 (304)
T ss_dssp             TTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSE
T ss_pred             CCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCe
Confidence            999999999999999999999999999999999997               567999999999999 6789999999999


Q ss_pred             EEEEEcCCceeeeee----cCCceEEEEec--CC----------CccccCCCCCceEEEeeccCCcceeeeEEcCCCCeE
Q 046394          174 IKIWDLRKYEVLQTL----PGHAKTLDFSR--KD----------SGDFSGSHNYNRYMGYSMVKGYQIGKVSFRPYEDVL  237 (378)
Q Consensus       174 i~iwd~~~~~~~~~~----~~~i~~~~~sp--~g----------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l  237 (378)
                      |++||++++.+...+    ...+..+.|+|  ++          ...+|+.....++..+.+ |...|.++.|+|++.+|
T Consensus       165 v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~-h~~~v~~~~~~p~~~~l  243 (304)
T 2ynn_A          165 VKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEG-HMSNVSFAVFHPTLPII  243 (304)
T ss_dssp             EEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEEC-CSSCEEEEEECSSSSEE
T ss_pred             EEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCC-CCCCEEEEEECCCCCEE
Confidence            999999987776655    25677888876  33          347899888888889988 88999999999999888


Q ss_pred             EEecCCCeEEEEEc
Q 046394          238 GIGHSMGVSGILIP  251 (378)
Q Consensus       238 ~~~~~~g~~~~~~~  251 (378)
                      ++|+.||.+.+|..
T Consensus       244 ~s~s~Dg~i~iWd~  257 (304)
T 2ynn_A          244 ISGSEDGTLKIWNS  257 (304)
T ss_dssp             EEEETTSCEEEEET
T ss_pred             EEEcCCCeEEEEEC
Confidence            88877776666543

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=1.5e-32  Score=245.84  Aligned_cols=234  Identities=15%  Similarity=0.128  Sum_probs=191.9

Q ss_pred             ceeeEEEeccceeeeeeccc-------ceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeeccCC
Q 046394           15 VEKTWRIKQEAIAREVDILS-------SRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKEHG   86 (378)
Q Consensus        15 ~~~~~~~~~~~~i~~~d~~~-------~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~   86 (378)
                      ....+..+.|+.|++||+.+       +.....+.+|...|.+++|+|++.+|++|+.|+.|++|| .++..+..+.+|.
T Consensus        39 ~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~  118 (343)
T 2xzm_R           39 SPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQ  118 (343)
T ss_dssp             CCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCC
T ss_pred             CCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCC
Confidence            44566777889999999874       345677899999999999999999999999999999999 5677888999998


Q ss_pred             Ce-eEEEE-----EEEEEeCCCeEEEEEcCCCcEEEEEe---cCCCCeeEEEEcCCC----------CEEEEEcCCCe--
Q 046394           87 EV-LKLQF-----LLASINKLGQLRYQNVTMGEIVGNFW---TGLGRTDVIRVNPFN----------GVVSLGHSGGT--  145 (378)
Q Consensus        87 ~~-~~l~~-----~l~s~~~d~~i~iwd~~~~~~~~~~~---~~~~~v~~~~~s~~~----------~~l~~~~~d~~--  145 (378)
                      .. .+++|     +|++++.|++|++||+.. .......   .|...+.+++|+|++          .+|++++.|+.  
T Consensus       119 ~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~  197 (343)
T 2xzm_R          119 SEVYSVAFSPDNRQILSAGAEREIKLWNILG-ECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLK  197 (343)
T ss_dssp             SCEEEEEECSSTTEEEEEETTSCEEEEESSS-CEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEE
T ss_pred             CcEEEEEECCCCCEEEEEcCCCEEEEEeccC-CceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEE
Confidence            76 99999     899999999999999974 4443433   577889999999987          78999999987  


Q ss_pred             -----------eeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCC-ceeeeee--cCCceEEEEecCCCc--------
Q 046394          146 -----------MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRK-YEVLQTL--PGHAKTLDFSRKDSG--------  203 (378)
Q Consensus       146 -----------~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~-~~~~~~~--~~~i~~~~~sp~g~~--------  203 (378)
                                 +.+|...|.+++|+|+|++|++++.|+.|+|||+.. ..+...+  ...+.+++|+|++.+        
T Consensus       198 iwd~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~~la~~~d~~  277 (343)
T 2xzm_R          198 VWNTNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVAVGTDQG  277 (343)
T ss_dssp             EEETTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEECSSCEEEEEECSSSCEEEEEESSC
T ss_pred             EEcCCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeecCCCcEEEEEECCCCCEEEEECCCC
Confidence                       567999999999999999999999999999999954 4445555  467999999998875        


Q ss_pred             -cccCCCCCceEE--Eee-----------ccCCcceeeeEEcCCCCeEEEecCCCeEEEEE
Q 046394          204 -DFSGSHNYNRYM--GYS-----------MVKGYQIGKVSFRPYEDVLGIGHSMGVSGILI  250 (378)
Q Consensus       204 -~~~~~~~~~~~~--~~~-----------~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~  250 (378)
                       .+|+..+.....  .+.           + |...|++++|+|+|.+|++|+.||.+.+|.
T Consensus       278 v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~  337 (343)
T 2xzm_R          278 VKIFNLMTQSKAPVCTIEAEPITKAEGQKG-KNPQCTSLAWNALGKKLFAGFTDGVIRTFS  337 (343)
T ss_dssp             EEEEESSSCCSCSEEECCCCSGGGBTTBCC-SCCCEEEEEECSSSCCEEEEETTSEEEEEE
T ss_pred             EEEEEeCCCCCCceEEeecCcchhhhhhcC-CCCceEEEEECCCCCeEEEecCCceEEEEE
Confidence             455544333221  222           3 667799999999999999998888777664

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=3.3e-32  Score=243.78  Aligned_cols=234  Identities=13%  Similarity=0.140  Sum_probs=185.2

Q ss_pred             ceeeEEEeccceeeeeecccceeeE---EeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCC---CeEEeeccCCCe
Q 046394           15 VEKTWRIKQEAIAREVDILSSRNQY---DIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDG---TELHCSKEHGEV   88 (378)
Q Consensus        15 ~~~~~~~~~~~~i~~~d~~~~~~~~---~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~---~~~~~~~~~~~~   88 (378)
                      ....+..+.|+.|++||+.++....   ...+|...|.+++|+|+|++|++|+.|+.|++||...   ..+..+.+|...
T Consensus        28 g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~  107 (345)
T 3fm0_A           28 GTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENE  107 (345)
T ss_dssp             SSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSC
T ss_pred             CCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCC
Confidence            3456667789999999998875432   2367999999999999999999999999999999543   346778899876


Q ss_pred             -eEEEE-----EEEEEeCCCeEEEEEcCCCc---EEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe--------------
Q 046394           89 -LKLQF-----LLASINKLGQLRYQNVTMGE---IVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT--------------  145 (378)
Q Consensus        89 -~~l~~-----~l~s~~~d~~i~iwd~~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~--------------  145 (378)
                       .+++|     +|++++.|++|++||+.++.   ++..+..|...|.+++|+|++.+|++++.|+.              
T Consensus       108 v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~  187 (345)
T 3fm0_A          108 VKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCC  187 (345)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEE
T ss_pred             ceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEE
Confidence             99999     99999999999999998763   46677789999999999999999999999987              


Q ss_pred             --eeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCC---------------ceeeeee----cCCceEEEEecCCCc-
Q 046394          146 --MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRK---------------YEVLQTL----PGHAKTLDFSRKDSG-  203 (378)
Q Consensus       146 --~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~---------------~~~~~~~----~~~i~~~~~sp~g~~-  203 (378)
                        +.+|...|.+++|+|+|++|++++.|++|+|||+..               ..++.++    ...|.+++|+|++.. 
T Consensus       188 ~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l  267 (345)
T 3fm0_A          188 ATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGAL  267 (345)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCE
T ss_pred             EEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEE
Confidence              457999999999999999999999999999999742               1234444    257899999998775 


Q ss_pred             ---------cccCCCCC----ce-----EEEeeccCCcceeeeEEcCCCC-eEEEecCCCeEEEE
Q 046394          204 ---------DFSGSHNY----NR-----YMGYSMVKGYQIGKVSFRPYED-VLGIGHSMGVSGIL  249 (378)
Q Consensus       204 ---------~~~~~~~~----~~-----~~~~~~~~~~~v~~~~~sp~g~-~l~~~~~~g~~~~~  249 (378)
                               .+|+....    .+     ...+.+ |...|++++|+|++. +||+|+.||.+.+|
T Consensus       268 ~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W  331 (345)
T 3fm0_A          268 ATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQA-HSQDVNCVAWNPKEPGLLASCSDDGEVAFW  331 (345)
T ss_dssp             EEEETTSCEEEEEECTTSCTTSCCEEEEEEETTS-SSSCEEEEEECSSSTTEEEEEETTSCEEEE
T ss_pred             EEEeCCCeEEEEEeCCCCCcceeeEEEEeeeccc-ccCcEeEeEEeCCCceEEEEcCCCCcEEEE
Confidence                     34432211    11     111234 788999999999984 67766666644443

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=4.8e-32  Score=242.25  Aligned_cols=217  Identities=16%  Similarity=0.159  Sum_probs=186.5

Q ss_pred             ceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeeccCCCe-eEEEE-----EEEEEeCCCeEEEE
Q 046394           35 SRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKEHGEV-LKLQF-----LLASINKLGQLRYQ  107 (378)
Q Consensus        35 ~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~-~~l~~-----~l~s~~~d~~i~iw  107 (378)
                      ......+.+|...|++++|+|++++|++|+.||.|+||| .++..+..+..|... .+++|     ++++++.|+.|++|
T Consensus        45 ~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw  124 (340)
T 1got_B           45 MRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIY  124 (340)
T ss_dssp             CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEE
T ss_pred             chhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEE
Confidence            345678999999999999999999999999999999999 677888888888876 89999     99999999999999


Q ss_pred             EcCCC----cEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe--------------eeecCCCEEEEEEecCCCEEEEEE
Q 046394          108 NVTMG----EIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT--------------MLCHQGPVSALAFHPNGHLMATSG  169 (378)
Q Consensus       108 d~~~~----~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~--------------~~~h~~~v~~~~~sp~g~~l~t~~  169 (378)
                      |+.++    .....+.+|.+.+.++.|++++. +++++.|+.              +.+|.+.|.+++|+|++++|++++
T Consensus       125 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~  203 (340)
T 1got_B          125 NLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGA  203 (340)
T ss_dssp             ETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             ECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEe
Confidence            99875    35677888999999999999876 777777776              567999999999999999999999


Q ss_pred             CCCeEEEEEcCCceeeeee---cCCceEEEEecCCCc----------cccCCCCCceEEEeec-cCCcceeeeEEcCCCC
Q 046394          170 KDCKIKIWDLRKYEVLQTL---PGHAKTLDFSRKDSG----------DFSGSHNYNRYMGYSM-VKGYQIGKVSFRPYED  235 (378)
Q Consensus       170 ~d~~i~iwd~~~~~~~~~~---~~~i~~~~~sp~g~~----------~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~g~  235 (378)
                      .|++|++||++++.++.++   ...|++++|+|+|.+          .+|+......+..+.. .+...|++++|+|+|.
T Consensus       204 ~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~  283 (340)
T 1got_B          204 CDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGR  283 (340)
T ss_dssp             TTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSS
T ss_pred             CCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCC
Confidence            9999999999999998888   368999999998774          6777766666555532 1234799999999999


Q ss_pred             eEEEecCCCeEEEEEcC
Q 046394          236 VLGIGHSMGVSGILIPG  252 (378)
Q Consensus       236 ~l~~~~~~g~~~~~~~~  252 (378)
                      +|++|+.||.+.+|...
T Consensus       284 ~l~~g~~d~~i~vwd~~  300 (340)
T 1got_B          284 LLLAGYDDFNCNVWDAL  300 (340)
T ss_dssp             EEEEEETTSEEEEEETT
T ss_pred             EEEEECCCCeEEEEEcc
Confidence            99999999987777543

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=2.2e-31  Score=244.91  Aligned_cols=231  Identities=14%  Similarity=0.152  Sum_probs=198.0

Q ss_pred             eeEEEeccceeeeeecccceeeEEee--cCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeeccCCCe-eEEE
Q 046394           17 KTWRIKQEAIAREVDILSSRNQYDIM--LPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKEHGEV-LKLQ   92 (378)
Q Consensus        17 ~~~~~~~~~~i~~~d~~~~~~~~~l~--~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~-~~l~   92 (378)
                      ..+.+.-|+.|++||+.+++....+.  .|...|++++|+|+|++||+|+.||.|+||| .++..+..+.+|... .++.
T Consensus       117 n~lAvgld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s  196 (420)
T 4gga_A          117 NVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLS  196 (420)
T ss_dssp             SEEEEEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEE
T ss_pred             CEEEEEeCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEe
Confidence            46677779999999999998776655  5677899999999999999999999999999 567788899999876 8888


Q ss_pred             E---EEEEEeCCCeEEEEEcCCC-cEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe------------------eeecC
Q 046394           93 F---LLASINKLGQLRYQNVTMG-EIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT------------------MLCHQ  150 (378)
Q Consensus        93 ~---~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~------------------~~~h~  150 (378)
                      +   ++++|+.|+.+.+||.... ..+..+..|...+..+.|+|++.++++++.|+.                  ...|.
T Consensus       197 ~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~  276 (420)
T 4gga_A          197 WNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQ  276 (420)
T ss_dssp             EETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCS
T ss_pred             eCCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccC
Confidence            8   9999999999999999864 567788899999999999999999999999987                  45688


Q ss_pred             CCEEEEEEecCC-CEEEEE--ECCCeEEEEEcCCceeeeee--cCCceEEEEecCCC------------ccccCCCCCce
Q 046394          151 GPVSALAFHPNG-HLMATS--GKDCKIKIWDLRKYEVLQTL--PGHAKTLDFSRKDS------------GDFSGSHNYNR  213 (378)
Q Consensus       151 ~~v~~~~~sp~g-~~l~t~--~~d~~i~iwd~~~~~~~~~~--~~~i~~~~~sp~g~------------~~~~~~~~~~~  213 (378)
                      ..|.+++|+|.+ .+++++  +.|++|++||+.++.++..+  +..+.++.|+|++.            ..+|+..+..+
T Consensus       277 ~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~  356 (420)
T 4gga_A          277 GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAK  356 (420)
T ss_dssp             SCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCE
T ss_pred             CceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcE
Confidence            899999999954 556654  47999999999999998888  67889999988665            46788888889


Q ss_pred             EEEeeccCCcceeeeEEcCCCCeEEEecCCCeEEE
Q 046394          214 YMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGI  248 (378)
Q Consensus       214 ~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~  248 (378)
                      +..+.+ |..+|++++|+|||.+|++|+.||.+.+
T Consensus       357 v~~l~g-H~~~V~~l~~spdg~~l~S~s~D~tvri  390 (420)
T 4gga_A          357 VAELKG-HTSRVLSLTMSPDGATVASAAADETLRL  390 (420)
T ss_dssp             EEEECC-CSSCEEEEEECTTSSCEEEEETTTEEEE
T ss_pred             EEEEcC-CCCCEEEEEEcCCCCEEEEEecCCeEEE
Confidence            999988 9999999999999977776666664333

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=6e-32  Score=241.56  Aligned_cols=203  Identities=12%  Similarity=0.074  Sum_probs=158.6

Q ss_pred             eeeEEEeccceeeeeecccceeeEE----eecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeeccCCCe-e
Q 046394           16 EKTWRIKQEAIAREVDILSSRNQYD----IMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKEHGEV-L   89 (378)
Q Consensus        16 ~~~~~~~~~~~i~~~d~~~~~~~~~----l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~-~   89 (378)
                      ...+....++.|++||+.+++....    +.+|...|++++|+|+|++|++|+.||.|++|| .++..+..+.+|... .
T Consensus        94 ~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~  173 (344)
T 4gqb_B           94 RGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVT  173 (344)
T ss_dssp             TEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE
T ss_pred             CeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceE
Confidence            4567778899999999999876544    458999999999999999999999999999999 567788999999876 9


Q ss_pred             EEEE------EEEEEeCCCeEEEEEcCCCcEEEEEec--CCCCeeEEEEcCCC-CEEEEEcCCCe--------------e
Q 046394           90 KLQF------LLASINKLGQLRYQNVTMGEIVGNFWT--GLGRTDVIRVNPFN-GVVSLGHSGGT--------------M  146 (378)
Q Consensus        90 ~l~~------~l~s~~~d~~i~iwd~~~~~~~~~~~~--~~~~v~~~~~s~~~-~~l~~~~~d~~--------------~  146 (378)
                      +++|      +|++++.|++|++||++++++...+..  +...+.+++|+|++ .+|++|+.|+.              +
T Consensus       174 ~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~  253 (344)
T 4gqb_B          174 CVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSS  253 (344)
T ss_dssp             EEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEE
T ss_pred             EEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEE
Confidence            9999      789999999999999999998877643  34457777777744 56777777775              5


Q ss_pred             eecCCCEEEEEEecCC-CEEEEEECCCeEEEEEcCCceeeeeecCCceEEEEecCCCccccCCCCCceEEEeeccCCcce
Q 046394          147 LCHQGPVSALAFHPNG-HLMATSGKDCKIKIWDLRKYEVLQTLPGHAKTLDFSRKDSGDFSGSHNYNRYMGYSMVKGYQI  225 (378)
Q Consensus       147 ~~h~~~v~~~~~sp~g-~~l~t~~~d~~i~iwd~~~~~~~~~~~~~i~~~~~sp~g~~~~~~~~~~~~~~~~~~~~~~~v  225 (378)
                      .+|...|++++|+|+| ++|++++.|++|+|||+.++++                              ..+.+ |...|
T Consensus       254 ~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~------------------------------~~~~~-H~~~V  302 (344)
T 4gqb_B          254 AVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSEL------------------------------FRSQA-HRDFV  302 (344)
T ss_dssp             ECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEE------------------------------EEECC-CSSCE
T ss_pred             cCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcE------------------------------EEEcC-CCCCE
Confidence            6677777777777776 4677777777777777765432                              23445 88899


Q ss_pred             eeeEEcCCCC-eEEEecCCCeEEEE
Q 046394          226 GKVSFRPYED-VLGIGHSMGVSGIL  249 (378)
Q Consensus       226 ~~~~~sp~g~-~l~~~~~~g~~~~~  249 (378)
                      ++++|+|++. +|++|+.||.+.+|
T Consensus       303 ~~v~~sp~~~~llas~s~D~~v~~w  327 (344)
T 4gqb_B          303 RDATWSPLNHSLLTTVGWDHQVVHH  327 (344)
T ss_dssp             EEEEECSSSTTEEEEEETTSCEEEE
T ss_pred             EEEEEeCCCCeEEEEEcCCCeEEEE
Confidence            9999999986 34455555544333

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=7.2e-32  Score=259.70  Aligned_cols=232  Identities=16%  Similarity=0.100  Sum_probs=195.3

Q ss_pred             eEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCC-CC--eEEe-------------
Q 046394           18 TWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRD-GT--ELHC-------------   81 (378)
Q Consensus        18 ~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~-~~--~~~~-------------   81 (378)
                      .+....++.+.+||+.++.....+.+|...|++++|||+|++||+|+.||+|+|||.. +.  ....             
T Consensus        32 ~l~~~~~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~f  111 (611)
T 1nr0_A           32 KIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISW  111 (611)
T ss_dssp             EEEEEETTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEE
T ss_pred             EEEeCCCCEEEEecCCCcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEE
Confidence            3344456799999999999999999999999999999999999999999999999952 21  1112             


Q ss_pred             -------------------------------eccCCCe-eEEEE------EEEEEeCCCeEEEEEcCCCcEEEEEecCCC
Q 046394           82 -------------------------------SKEHGEV-LKLQF------LLASINKLGQLRYQNVTMGEIVGNFWTGLG  123 (378)
Q Consensus        82 -------------------------------~~~~~~~-~~l~~------~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~  123 (378)
                                                     +.+|... .+++|      .|++++.|++|++||..++++...+.+|..
T Consensus       112 s~dg~~l~~~~~~~~~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~  191 (611)
T 1nr0_A          112 DSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTK  191 (611)
T ss_dssp             CTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSS
T ss_pred             CCCCCEEEEEECCCCceeEEEEeeCCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccC
Confidence                                           2344444 77777      599999999999999999999999999999


Q ss_pred             CeeEEEEcCCCCEEEEEcCCCe--------------e-e------ecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCc
Q 046394          124 RTDVIRVNPFNGVVSLGHSGGT--------------M-L------CHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKY  182 (378)
Q Consensus       124 ~v~~~~~s~~~~~l~~~~~d~~--------------~-~------~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~  182 (378)
                      .|.+++|+|++.+|++++.|+.              + .      +|.+.|.+++|+|+|++|++++.|++|+|||+.++
T Consensus       192 ~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~  271 (611)
T 1nr0_A          192 FVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATL  271 (611)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred             ceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCC
Confidence            9999999999999999999997              2 2      79999999999999999999999999999999999


Q ss_pred             eeeeee--c----CCceEE--------EEecCCCccccCCCCCceEEEeeccCCcceeeeEEcCCCCeEEEecCCCeEEE
Q 046394          183 EVLQTL--P----GHAKTL--------DFSRKDSGDFSGSHNYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGI  248 (378)
Q Consensus       183 ~~~~~~--~----~~i~~~--------~~sp~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~  248 (378)
                      +++.++  +    .....+        +.+.+|...+|+.....+...+.+ |...|++++|+|+|++|++++.||.+.+
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~g-h~~~v~~l~~spdg~~l~s~s~D~~v~~  350 (611)
T 1nr0_A          272 KVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYG-HNKAITALSSSADGKTLFSADAEGHINS  350 (611)
T ss_dssp             EEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECC-CSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             ceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcC-CCCCEEEEEEeCCCCEEEEEeCCCcEEE
Confidence            988777  1    122233        344566678888777777777777 8899999999999999999999998887


Q ss_pred             EE
Q 046394          249 LI  250 (378)
Q Consensus       249 ~~  250 (378)
                      |.
T Consensus       351 Wd  352 (611)
T 1nr0_A          351 WD  352 (611)
T ss_dssp             EE
T ss_pred             EE
Confidence            75

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=4.4e-31  Score=233.00  Aligned_cols=234  Identities=15%  Similarity=0.161  Sum_probs=200.8

Q ss_pred             ceeeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeeccCCCe-eEEE
Q 046394           15 VEKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKEHGEV-LKLQ   92 (378)
Q Consensus        15 ~~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~-~~l~   92 (378)
                      ....+....++.+++|++.+++....+.+|...|.+++|+|++++|++|+.||.|++|| .++..+..+.+|... .++.
T Consensus        35 ~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~  114 (312)
T 4ery_A           35 GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCN  114 (312)
T ss_dssp             SSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEE
T ss_pred             CCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEE
Confidence            34566677899999999999999999999999999999999999999999999999999 567788889999876 8999


Q ss_pred             E-----EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe---------------eeecCCC
Q 046394           93 F-----LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT---------------MLCHQGP  152 (378)
Q Consensus        93 ~-----~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~---------------~~~h~~~  152 (378)
                      |     ++++++.|+.|++||+.+++.+..+..|...+.+++|+|++.+|++++.|+.               ...+...
T Consensus       115 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~  194 (312)
T 4ery_A          115 FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP  194 (312)
T ss_dssp             ECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCC
T ss_pred             EcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCc
Confidence            9     9999999999999999999999999999999999999999999999999987               2345678


Q ss_pred             EEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee--c-CC--ceEEEEe-----------cCCCccccCCCCCceEEE
Q 046394          153 VSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL--P-GH--AKTLDFS-----------RKDSGDFSGSHNYNRYMG  216 (378)
Q Consensus       153 v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~--~-~~--i~~~~~s-----------p~g~~~~~~~~~~~~~~~  216 (378)
                      +.+++|+|++++|++++.|+.|++||+++++++..+  + ..  .....|+           .||...+|+......+..
T Consensus       195 ~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~  274 (312)
T 4ery_A          195 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK  274 (312)
T ss_dssp             EEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEE
T ss_pred             eEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhh
Confidence            999999999999999999999999999999988877  2 11  1222232           345568899888888888


Q ss_pred             eeccCCcceeeeEEcCCCCeEEEec--CCCeEEEE
Q 046394          217 YSMVKGYQIGKVSFRPYEDVLGIGH--SMGVSGIL  249 (378)
Q Consensus       217 ~~~~~~~~v~~~~~sp~g~~l~~~~--~~g~~~~~  249 (378)
                      +.+ |...|.+++|+|++.+|++++  .||.+.+|
T Consensus       275 ~~~-h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W  308 (312)
T 4ery_A          275 LQG-HTDVVISTACHPTENIIASAALENDKTIKLW  308 (312)
T ss_dssp             ECC-CSSCEEEEEECSSSSEEEEEECTTTCCEEEE
T ss_pred             hhc-cCCcEEEEeecCcCCceEEEEccCCccEEEe
Confidence            888 889999999999998888775  34444443

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=2e-31  Score=254.85  Aligned_cols=230  Identities=15%  Similarity=0.223  Sum_probs=203.2

Q ss_pred             eeeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEeeccCCCe-eEEEE-
Q 046394           16 EKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTELHCSKEHGEV-LKLQF-   93 (378)
Q Consensus        16 ~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~l~~-   93 (378)
                      ...+....++.+++||. +++....+.+|...|.+++|+|++.+|++++.||.|++||.++..+..+.+|... .+++| 
T Consensus       275 ~~l~~~~~d~~i~~w~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s  353 (577)
T 2ymu_A          275 QTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFS  353 (577)
T ss_dssp             SEEEEEETTSCEEEEET-TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEEC
T ss_pred             CEEEEEeCCCEEEEEeC-CCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeEEEeCCCCCEEEEEEC
Confidence            34556677899999996 4667788899999999999999999999999999999999999888899998876 89999 


Q ss_pred             ----EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe-------------eeecCCCEEEE
Q 046394           94 ----LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT-------------MLCHQGPVSAL  156 (378)
Q Consensus        94 ----~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~-------------~~~h~~~v~~~  156 (378)
                          .+++++.|+.|++||. +++.+..+..|...|.+++|+|++++|++++.|+.             +.+|...|+++
T Consensus       354 ~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~v~~~  432 (577)
T 2ymu_A          354 PDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGV  432 (577)
T ss_dssp             TTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTCCEEEEEECCSSCEEEE
T ss_pred             CCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCEEEEecCCCCCeEEE
Confidence                9999999999999995 67888899999999999999999999999999987             56799999999


Q ss_pred             EEecCCCEEEEEECCCeEEEEEcCCceeeeee---cCCceEEEEecCCCc----------cccCCCCCceEEEeeccCCc
Q 046394          157 AFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL---PGHAKTLDFSRKDSG----------DFSGSHNYNRYMGYSMVKGY  223 (378)
Q Consensus       157 ~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~~sp~g~~----------~~~~~~~~~~~~~~~~~~~~  223 (378)
                      +|+|++++|++++.|++|++||+ +++.+..+   ...+.+++|+|+|.+          .+|+. +...+..+.+ |..
T Consensus       433 ~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~-h~~  509 (577)
T 2ymu_A          433 AFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTG-HSS  509 (577)
T ss_dssp             EECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEEC-CSS
T ss_pred             EECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeC-CCC
Confidence            99999999999999999999996 56666666   478999999999875          56663 4567777878 889


Q ss_pred             ceeeeEEcCCCCeEEEecCCCeEEEEE
Q 046394          224 QIGKVSFRPYEDVLGIGHSMGVSGILI  250 (378)
Q Consensus       224 ~v~~~~~sp~g~~l~~~~~~g~~~~~~  250 (378)
                      .|++++|+|+|++|++++.||.+.+|.
T Consensus       510 ~v~~l~~s~dg~~l~s~~~dg~v~lwd  536 (577)
T 2ymu_A          510 SVRGVAFSPDGQTIASASDDKTVKLWN  536 (577)
T ss_dssp             CEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             CEEEEEEcCCCCEEEEEECcCEEEEEe
Confidence            999999999999999999999877764

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=1e-31  Score=237.90  Aligned_cols=207  Identities=16%  Similarity=0.159  Sum_probs=183.1

Q ss_pred             eeeEEeecCCCCceEEEEcCCC-CEEEEEeCCCcEEEEeCC------CCeEEeeccCCCe-eEEEE-----EEEEEeCCC
Q 046394           36 RNQYDIMLPELGPYTLDFTSSG-RYMAAAGCKGYPYFYNRD------GTELHCSKEHGEV-LKLQF-----LLASINKLG  102 (378)
Q Consensus        36 ~~~~~l~~~~~~v~~~~~sp~g-~~l~~~~~dg~i~iwd~~------~~~~~~~~~~~~~-~~l~~-----~l~s~~~d~  102 (378)
                      .....+.+|.+.|.+++|+|++ ++|++|+.|++|++|+..      +.++..+.+|... .+++|     ++++++.|+
T Consensus         8 ~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~   87 (319)
T 3frx_A            8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDK   87 (319)
T ss_dssp             EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             EEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCC
Confidence            3456789999999999999965 899999999999999953      3456788999886 99999     999999999


Q ss_pred             eEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe-------------eeecCCCEEEEEEecC------CC
Q 046394          103 QLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT-------------MLCHQGPVSALAFHPN------GH  163 (378)
Q Consensus       103 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~-------------~~~h~~~v~~~~~sp~------g~  163 (378)
                      +|++||+.+++.+..+.+|...|.+++|+|++.+|++++.|+.             +.+|...|.+++|+|.      +.
T Consensus        88 ~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~  167 (319)
T 3frx_A           88 TLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSV  167 (319)
T ss_dssp             EEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECCC------CC
T ss_pred             EEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeccCCcEEEEEEccCCCCCCCcc
Confidence            9999999999999999999999999999999999999999997             5679999999999984      45


Q ss_pred             EEEEEECCCeEEEEEcCCceeeeee---cCCceEEEEecCCCc----------cccCCCCCceEEEeeccCCcceeeeEE
Q 046394          164 LMATSGKDCKIKIWDLRKYEVLQTL---PGHAKTLDFSRKDSG----------DFSGSHNYNRYMGYSMVKGYQIGKVSF  230 (378)
Q Consensus       164 ~l~t~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~~sp~g~~----------~~~~~~~~~~~~~~~~~~~~~v~~~~~  230 (378)
                      +|++++.|++|++||+++++....+   ...+.+++|+|+|.+          .+|+.....++..+..  ...|.+++|
T Consensus       168 ~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~v~~~~~  245 (319)
T 3frx_A          168 TIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA--QDEVFSLAF  245 (319)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC--CSCEEEEEE
T ss_pred             EEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecC--CCcEEEEEE
Confidence            8999999999999999999988877   378999999999875          6788888777777765  457999999


Q ss_pred             cCCCCeEEEecCCC
Q 046394          231 RPYEDVLGIGHSMG  244 (378)
Q Consensus       231 sp~g~~l~~~~~~g  244 (378)
                      +|++.+|+++..++
T Consensus       246 sp~~~~la~~~~~~  259 (319)
T 3frx_A          246 SPNRYWLAAATATG  259 (319)
T ss_dssp             CSSSSEEEEEETTE
T ss_pred             cCCCCEEEEEcCCC
Confidence            99999999887765

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.5e-31  Score=236.53  Aligned_cols=233  Identities=10%  Similarity=0.076  Sum_probs=180.5

Q ss_pred             eeEEEeccceeeeeecccc--eeeEEe-ec-CCCCceEEEEcCCCCEEEEEeCCCcEEEEeCC--------CCeEEeecc
Q 046394           17 KTWRIKQEAIAREVDILSS--RNQYDI-ML-PELGPYTLDFTSSGRYMAAAGCKGYPYFYNRD--------GTELHCSKE   84 (378)
Q Consensus        17 ~~~~~~~~~~i~~~d~~~~--~~~~~l-~~-~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~--------~~~~~~~~~   84 (378)
                      ..+....|+.|++||+.++  .....+ .. |...|.+++|+|++++|++|+.|+.|+|||..        ...+..+.+
T Consensus        26 ~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~  105 (330)
T 2hes_X           26 ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEG  105 (330)
T ss_dssp             EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC-
T ss_pred             EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcC
Confidence            5666778999999999875  344445 34 98999999999999999999999999999963        245677888


Q ss_pred             CCCe-eEEEE-----EEEEEeCCCeEEEEEcCC----CcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe---------
Q 046394           85 HGEV-LKLQF-----LLASINKLGQLRYQNVTM----GEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT---------  145 (378)
Q Consensus        85 ~~~~-~~l~~-----~l~s~~~d~~i~iwd~~~----~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~---------  145 (378)
                      |... .+++|     +|++|+.|++|++||+..    .+++..+..|...|.+++|+|++.+|++++.|+.         
T Consensus       106 h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~  185 (330)
T 2hes_X          106 HENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDD  185 (330)
T ss_dssp             ---CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETT
T ss_pred             CCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCC
Confidence            9876 99999     999999999999999943    2567788899999999999999999999999987         


Q ss_pred             -------eeecCCCEEEEEEecC--CCEEEEEECCCeEEEEEcCCc--------eeeeee----cCCceEEEEecCCC--
Q 046394          146 -------MLCHQGPVSALAFHPN--GHLMATSGKDCKIKIWDLRKY--------EVLQTL----PGHAKTLDFSRKDS--  202 (378)
Q Consensus       146 -------~~~h~~~v~~~~~sp~--g~~l~t~~~d~~i~iwd~~~~--------~~~~~~----~~~i~~~~~sp~g~--  202 (378)
                             +.+|.+.|.+++|+|+  +.+|++++.|++|+|||+..+        .+...+    ...|.+++|++++.  
T Consensus       186 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~l~  265 (330)
T 2hes_X          186 DWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNGLIA  265 (330)
T ss_dssp             EEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTSCEE
T ss_pred             CeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCCEEE
Confidence                   4579999999999998  778999999999999999765        334444    25789999987653  


Q ss_pred             -------ccccCCCCCc--eEEEe-eccCCc-ceeeeEEcC--CCCeEEEecCCCeEEEEE
Q 046394          203 -------GDFSGSHNYN--RYMGY-SMVKGY-QIGKVSFRP--YEDVLGIGHSMGVSGILI  250 (378)
Q Consensus       203 -------~~~~~~~~~~--~~~~~-~~~~~~-~v~~~~~sp--~g~~l~~~~~~g~~~~~~  250 (378)
                             ..+|+.....  .+... .+ |.. .|++++|+|  ++.+||+|+.||.+.+|-
T Consensus       266 s~~~dg~v~iw~~~~~~~~~~~~~~~~-h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~  325 (330)
T 2hes_X          266 SVGADGVLAVYEEVDGEWKVFAKRALC-HGVYEINVVKWLELNGKTILATGGDDGIVNFWS  325 (330)
T ss_dssp             EEETTSCEEEEEEETTEEEEEEEESCT-TTTSCEEEEEEC-----CCEEEEETTSEEEEEE
T ss_pred             EEeCCCEEEEEEcCCCceEEEeccccc-cccceEEEEEEecCCCceEEEEecCCCcEEEEE
Confidence                   3666654442  22222 34 555 899999999  687888777777655553

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=3.6e-31  Score=254.81  Aligned_cols=234  Identities=15%  Similarity=0.167  Sum_probs=190.4

Q ss_pred             eeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeec-------cCCCe
Q 046394           17 KTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSK-------EHGEV   88 (378)
Q Consensus        17 ~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~-------~~~~~   88 (378)
                      ..+..+.|+.+++||..+++....+.+|...|.+++|+|+|++||+|+.|+.|++|| .++..+..+.       +|.+.
T Consensus       162 ~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~  241 (611)
T 1nr0_A          162 RIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGS  241 (611)
T ss_dssp             EEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSC
T ss_pred             EEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCC
Confidence            467778899999999999999999999999999999999999999999999999999 5677777774       68765


Q ss_pred             -eEEEE-----EEEEEeCCCeEEEEEcCCCcEEEEE-------------------------------------------e
Q 046394           89 -LKLQF-----LLASINKLGQLRYQNVTMGEIVGNF-------------------------------------------W  119 (378)
Q Consensus        89 -~~l~~-----~l~s~~~d~~i~iwd~~~~~~~~~~-------------------------------------------~  119 (378)
                       .+++|     +|++++.|++|++||+.+++++..+                                           .
T Consensus       242 V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~  321 (611)
T 1nr0_A          242 VFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRY  321 (611)
T ss_dssp             EEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEEC
T ss_pred             EEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEc
Confidence             99999     9999999999999999887665433                                           4


Q ss_pred             cCCCCeeEEEEcCCCCEEEEEcCCCe--------------e-eec-----------------------------------
Q 046394          120 TGLGRTDVIRVNPFNGVVSLGHSGGT--------------M-LCH-----------------------------------  149 (378)
Q Consensus       120 ~~~~~v~~~~~s~~~~~l~~~~~d~~--------------~-~~h-----------------------------------  149 (378)
                      +|...|.+++|+|++.+|++++.|+.              + .+|                                   
T Consensus       322 gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~  401 (611)
T 1nr0_A          322 GHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVD  401 (611)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSC
T ss_pred             CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCcccc
Confidence            67788999999999999999998876              0 111                                   


Q ss_pred             ----------------------------------------------CCCEEEEEEecCCCEEEEEECCCeEEEEEcCCce
Q 046394          150 ----------------------------------------------QGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYE  183 (378)
Q Consensus       150 ----------------------------------------------~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~  183 (378)
                                                                    ...+.+++|+|+|++|++++.|++|+|||+.++.
T Consensus       402 ~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~  481 (611)
T 1nr0_A          402 SSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGAS  481 (611)
T ss_dssp             TTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTE
T ss_pred             ccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCc
Confidence                                                          2346788999999999999999999999998765


Q ss_pred             e--eeee--cCCceEEEEecCCCc----------cccCCCC-CceEEE--eeccCCcceeeeEEcCCCCeEEEecCCCeE
Q 046394          184 V--LQTL--PGHAKTLDFSRKDSG----------DFSGSHN-YNRYMG--YSMVKGYQIGKVSFRPYEDVLGIGHSMGVS  246 (378)
Q Consensus       184 ~--~~~~--~~~i~~~~~sp~g~~----------~~~~~~~-~~~~~~--~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~  246 (378)
                      .  +...  ...|++++|||||.+          .+|+... ..++..  +.+ |...|++++|+|||++||+|+.|+.+
T Consensus       482 ~~~~~~~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~-H~~~V~~v~fspdg~~lasgs~D~~v  560 (611)
T 1nr0_A          482 VSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTF-HTAKVACVSWSPDNVRLATGSLDNSV  560 (611)
T ss_dssp             EEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCC-CSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             eeeeeccCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeee-cccceeEEEECCCCCEEEEEECCCcE
Confidence            4  2333  478999999999986          4455443 333222  233 78899999999999888888877766


Q ss_pred             EEEEc
Q 046394          247 GILIP  251 (378)
Q Consensus       247 ~~~~~  251 (378)
                      .+|..
T Consensus       561 ~lW~~  565 (611)
T 1nr0_A          561 IVWNM  565 (611)
T ss_dssp             EEEET
T ss_pred             EEEEC
Confidence            66543

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=4.7e-31  Score=252.34  Aligned_cols=229  Identities=16%  Similarity=0.229  Sum_probs=202.5

Q ss_pred             eeeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEeeccCCCe-eEEEE-
Q 046394           16 EKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTELHCSKEHGEV-LKLQF-   93 (378)
Q Consensus        16 ~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~l~~-   93 (378)
                      ...+....++.+++||+.. ..+..+.+|...|.+++|+|+|.+|++|+.||.|++||.++..+..+.+|... .+++| 
T Consensus       316 ~~l~t~~~d~~i~~w~~~~-~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~~~~~~~~~~~~v~~~~~s  394 (577)
T 2ymu_A          316 QTIASASDDKTVKLWNRNG-QHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFS  394 (577)
T ss_dssp             SEEEEEETTSCEEEEETTS-CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTCCEEEEEECCSSCEEEEEEC
T ss_pred             CEEEEEeCCCeEEEEeCCC-CeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCCCEEEEecCCCCCeEEEEEC
Confidence            4455667789999999754 45677889999999999999999999999999999999999999999999876 99999 


Q ss_pred             ----EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe-------------eeecCCCEEEE
Q 046394           94 ----LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT-------------MLCHQGPVSAL  156 (378)
Q Consensus        94 ----~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~-------------~~~h~~~v~~~  156 (378)
                          +|++++.|+.|++||. +++.+..+..|...|.+++|+|++.+|++++.|+.             +.+|...|.++
T Consensus       395 ~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~v~~~  473 (577)
T 2ymu_A          395 PDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGV  473 (577)
T ss_dssp             TTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCEEEEEECCSSCEEEE
T ss_pred             CCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCCCEEEEEcCCCCCEEEE
Confidence                8999999999999995 67888899999999999999999999999999987             67899999999


Q ss_pred             EEecCCCEEEEEECCCeEEEEEcCCceeeeee---cCCceEEEEecCCCc----------cccCCCCCceEEEeeccCCc
Q 046394          157 AFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL---PGHAKTLDFSRKDSG----------DFSGSHNYNRYMGYSMVKGY  223 (378)
Q Consensus       157 ~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~~sp~g~~----------~~~~~~~~~~~~~~~~~~~~  223 (378)
                      +|+|++++|++++.|++|+|||. +++++..+   ...|++++|+|+|.+          .+|+. +..++..+.+ |..
T Consensus       474 ~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~-h~~  550 (577)
T 2ymu_A          474 AFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTG-HSS  550 (577)
T ss_dssp             EECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEEC-CSS
T ss_pred             EEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEcC-CCC
Confidence            99999999999999999999995 67888887   378999999999985          66774 5667778888 999


Q ss_pred             ceeeeEEcCCCCeEEEecCCCeEEEE
Q 046394          224 QIGKVSFRPYEDVLGIGHSMGVSGIL  249 (378)
Q Consensus       224 ~v~~~~~sp~g~~l~~~~~~g~~~~~  249 (378)
                      +|++++|+|||++|++++.||.+.+|
T Consensus       551 ~v~~~~fs~dg~~l~s~~~D~~i~~W  576 (577)
T 2ymu_A          551 SVWGVAFSPDGQTIASASSDKTVKLW  576 (577)
T ss_dssp             CEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred             CEEEEEEcCCCCEEEEEeCCCEEEEe
Confidence            99999999999888888877765554

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=1.1e-30  Score=238.08  Aligned_cols=227  Identities=12%  Similarity=0.120  Sum_probs=185.2

Q ss_pred             eEEEeccceeeeeecccceeeEEeecCCC------------------CceEEEEcCCCCEEEEEeCCCcEEEEeC-CCCe
Q 046394           18 TWRIKQEAIAREVDILSSRNQYDIMLPEL------------------GPYTLDFTSSGRYMAAAGCKGYPYFYNR-DGTE   78 (378)
Q Consensus        18 ~~~~~~~~~i~~~d~~~~~~~~~l~~~~~------------------~v~~~~~sp~g~~l~~~~~dg~i~iwd~-~~~~   78 (378)
                      .+....++.+++|++.++..+..+..|..                  .|.+++|+|+|++|++|+.||.|+|||. ++..
T Consensus        78 ~la~g~~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~  157 (393)
T 1erj_A           78 YLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKI  157 (393)
T ss_dssp             EEEEECBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEE
T ss_pred             EEEEEcCCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcE
Confidence            33444578899999999998888766532                  3889999999999999999999999995 5667


Q ss_pred             EEeeccCCCe-eEEEE-----EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcC-CCCEEEEEcCCCe------
Q 046394           79 LHCSKEHGEV-LKLQF-----LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNP-FNGVVSLGHSGGT------  145 (378)
Q Consensus        79 ~~~~~~~~~~-~~l~~-----~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~------  145 (378)
                      +..+.+|... .+++|     .|++++.|++|++||+.++++...+. +...+.+++|+| ++.+|++++.|+.      
T Consensus       158 ~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~  236 (393)
T 1erj_A          158 VMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDS  236 (393)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEET
T ss_pred             EEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEEC
Confidence            7889999876 99999     99999999999999999999888776 457799999999 8999999999987      


Q ss_pred             --------e-------eecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCc------------eeeeee--c-CCceEE
Q 046394          146 --------M-------LCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKY------------EVLQTL--P-GHAKTL  195 (378)
Q Consensus       146 --------~-------~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~------------~~~~~~--~-~~i~~~  195 (378)
                              +       .+|...|.+++|+|+|++|++++.|++|++||+++.            .+...+  | ..+.++
T Consensus       237 ~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~  316 (393)
T 1erj_A          237 ETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSV  316 (393)
T ss_dssp             TTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEE
T ss_pred             CCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEE
Confidence                    1       468899999999999999999999999999999763            233444  3 578999


Q ss_pred             EEecCCCc----------cccCCCCCceEEEeeccCCcceeeeEEcC------CCCeEEEecCCCeE
Q 046394          196 DFSRKDSG----------DFSGSHNYNRYMGYSMVKGYQIGKVSFRP------YEDVLGIGHSMGVS  246 (378)
Q Consensus       196 ~~sp~g~~----------~~~~~~~~~~~~~~~~~~~~~v~~~~~sp------~g~~l~~~~~~g~~  246 (378)
                      +|+|++.+          .+|+.....++..+.+ |...|.+++|+|      ++.+|++|+.||.+
T Consensus       317 ~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~-h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i  382 (393)
T 1erj_A          317 ATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQG-HRNSVISVAVANGSSLGPEYNVFATGSGDCKA  382 (393)
T ss_dssp             EECGGGCEEEEEETTSEEEEEETTTCCEEEEEEC-CSSCEEEEEECSSCTTCTTCEEEEEEETTSEE
T ss_pred             EECCCCCEEEEEeCCCeEEEEECCCCeEEEEECC-CCCCEEEEEecCCcCcCCCCCEEEEECCCCcE
Confidence            99998764          7788888888888888 889999999986      56445444444433

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=1.4e-31  Score=239.62  Aligned_cols=215  Identities=13%  Similarity=0.132  Sum_probs=175.8

Q ss_pred             eeeEEeecCCC-CceEEEEcCCCCEEEEEeCCCcEEEEeCCCCe-E---EeeccCCCe-eEEEE-----EEEEEeCCCeE
Q 046394           36 RNQYDIMLPEL-GPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTE-L---HCSKEHGEV-LKLQF-----LLASINKLGQL  104 (378)
Q Consensus        36 ~~~~~l~~~~~-~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~-~---~~~~~~~~~-~~l~~-----~l~s~~~d~~i  104 (378)
                      ..+..+.+|.. .|++++|+|+|++||+|+.|+.|+|||..+.. .   ....+|... .+++|     +|++++.|++|
T Consensus         6 ~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v   85 (345)
T 3fm0_A            6 VLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATT   85 (345)
T ss_dssp             EEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             EEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcE
Confidence            45677889987 89999999999999999999999999965432 2   223678765 99999     99999999999


Q ss_pred             EEEEcCCC--cEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe-----------------eeecCCCEEEEEEecCCCEE
Q 046394          105 RYQNVTMG--EIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT-----------------MLCHQGPVSALAFHPNGHLM  165 (378)
Q Consensus       105 ~iwd~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~-----------------~~~h~~~v~~~~~sp~g~~l  165 (378)
                      ++||+.++  .++..+.+|...|.+++|+|++.+|++++.|+.                 +.+|...|.+++|+|++.+|
T Consensus        86 ~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l  165 (345)
T 3fm0_A           86 CIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELL  165 (345)
T ss_dssp             EEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCE
T ss_pred             EEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEE
Confidence            99999876  457788899999999999999999999999987                 45688999999999999999


Q ss_pred             EEEECCCeEEEEEcCCcee--eeee---cCCceEEEEecCCCc----------cccCCCC---------------CceEE
Q 046394          166 ATSGKDCKIKIWDLRKYEV--LQTL---PGHAKTLDFSRKDSG----------DFSGSHN---------------YNRYM  215 (378)
Q Consensus       166 ~t~~~d~~i~iwd~~~~~~--~~~~---~~~i~~~~~sp~g~~----------~~~~~~~---------------~~~~~  215 (378)
                      ++++.|++|++||+.++..  ..++   ...|.+++|+|+|.+          .+|+...               ...+.
T Consensus       166 ~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~  245 (345)
T 3fm0_A          166 ASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCIC  245 (345)
T ss_dssp             EEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEE
T ss_pred             EEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeE
Confidence            9999999999999988754  4455   378999999999875          3443210               01122


Q ss_pred             EeeccCCcceeeeEEcCCCCeEEEecCCCeEEEEE
Q 046394          216 GYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILI  250 (378)
Q Consensus       216 ~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~  250 (378)
                      .+.+.|...|++++|+|++..|++++.|+.+.+|.
T Consensus       246 ~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~  280 (345)
T 3fm0_A          246 TLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQ  280 (345)
T ss_dssp             EECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEE
T ss_pred             EecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEE
Confidence            33333677899999999999999998888766654

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=3.1e-31  Score=259.14  Aligned_cols=236  Identities=16%  Similarity=0.123  Sum_probs=195.5

Q ss_pred             ceeeEEEeccceeeeeecccc-----eeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeeccCCCe
Q 046394           15 VEKTWRIKQEAIAREVDILSS-----RNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKEHGEV   88 (378)
Q Consensus        15 ~~~~~~~~~~~~i~~~d~~~~-----~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~   88 (378)
                      .+..+..+.|+.|++||+.+.     .....+.+|...|.+++|+|+|++|++|+.||.|+||| .++..+..+.+|...
T Consensus       395 ~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~  474 (694)
T 3dm0_A          395 ADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKD  474 (694)
T ss_dssp             CSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSC
T ss_pred             CCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCC
Confidence            445677888999999998764     34567899999999999999999999999999999999 566778889999876


Q ss_pred             -eEEEE-----EEEEEeCCCeEEEEEcCCCcEEEEE---ecCCCCeeEEEEcCCC--CEEEEEcCCCe------------
Q 046394           89 -LKLQF-----LLASINKLGQLRYQNVTMGEIVGNF---WTGLGRTDVIRVNPFN--GVVSLGHSGGT------------  145 (378)
Q Consensus        89 -~~l~~-----~l~s~~~d~~i~iwd~~~~~~~~~~---~~~~~~v~~~~~s~~~--~~l~~~~~d~~------------  145 (378)
                       .+++|     +|++++.|++|++||+.........   ..|...|.+++|+|++  ..|++++.|+.            
T Consensus       475 v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~  554 (694)
T 3dm0_A          475 VLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLR  554 (694)
T ss_dssp             EEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEE
T ss_pred             EEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEE
Confidence             99999     8999999999999998654433322   2467889999999987  58999999987            


Q ss_pred             --eeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee--cCCceEEEEecCCCc---------cccCCCCCc
Q 046394          146 --MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL--PGHAKTLDFSRKDSG---------DFSGSHNYN  212 (378)
Q Consensus       146 --~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~--~~~i~~~~~sp~g~~---------~~~~~~~~~  212 (378)
                        +.+|.+.|++++|+|+|++|++++.|++|+|||+++++++..+  +..+.+++|+|++.+         .+|+.....
T Consensus       555 ~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~i~iwd~~~~~  634 (694)
T 3dm0_A          555 STLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSPNRYWLCAATEHGIKIWDLESKS  634 (694)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBCSSCEEEEEECSSSSEEEEEETTEEEEEETTTTE
T ss_pred             EEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEEcCCCEEEEECCCCC
Confidence              5679999999999999999999999999999999999998888  578999999999874         667776666


Q ss_pred             eEEEeecc------------------CCcceeeeEEcCCCCeEEEecCCCeEEEEE
Q 046394          213 RYMGYSMV------------------KGYQIGKVSFRPYEDVLGIGHSMGVSGILI  250 (378)
Q Consensus       213 ~~~~~~~~------------------~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~  250 (378)
                      .+..+...                  +...+++++|+|+|.+|++|+.||.+++|-
T Consensus       635 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~  690 (694)
T 3dm0_A          635 IVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWG  690 (694)
T ss_dssp             EEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             ChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEe
Confidence            65544320                  112378899999998888888777665553

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=6.2e-32  Score=241.47  Aligned_cols=217  Identities=13%  Similarity=0.119  Sum_probs=168.3

Q ss_pred             eeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCC-------------CCeEEeeccCCCeeEEEE
Q 046394           27 AREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRD-------------GTELHCSKEHGEVLKLQF   93 (378)
Q Consensus        27 i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~-------------~~~~~~~~~~~~~~~l~~   93 (378)
                      .+.|++.....    ..|...|.+++|+|||++|++++ |+++++||..             +.....+.....+.+++|
T Consensus        16 ~r~w~~~~~~~----~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~   90 (344)
T 4gqb_B           16 AREWNLPPNAP----ACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTW   90 (344)
T ss_dssp             -------CCSC----SSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEE
T ss_pred             ccccCCCCCCc----ccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEE
Confidence            34566544332    34566799999999999998887 6778888721             111122233344689999


Q ss_pred             ----EEEEEeCCCeEEEEEcCCCcEEEE----EecCCCCeeEEEEcCCCCEEEEEcCCCe--------------eeecCC
Q 046394           94 ----LLASINKLGQLRYQNVTMGEIVGN----FWTGLGRTDVIRVNPFNGVVSLGHSGGT--------------MLCHQG  151 (378)
Q Consensus        94 ----~l~s~~~d~~i~iwd~~~~~~~~~----~~~~~~~v~~~~~s~~~~~l~~~~~d~~--------------~~~h~~  151 (378)
                          .+++|+.||+|+|||+.+++.+..    +.+|.+.|.+++|+|++++|++|+.|+.              +.+|.+
T Consensus        91 s~d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~  170 (344)
T 4gqb_B           91 VGERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAA  170 (344)
T ss_dssp             ETTTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSS
T ss_pred             eCCCeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCC
Confidence                899999999999999998875433    3478999999999999999999999997              678999


Q ss_pred             CEEEEEEecCC-CEEEEEECCCeEEEEEcCCceeeeee-----cCCceEEEEecCCC-----------ccccCCCCCceE
Q 046394          152 PVSALAFHPNG-HLMATSGKDCKIKIWDLRKYEVLQTL-----PGHAKTLDFSRKDS-----------GDFSGSHNYNRY  214 (378)
Q Consensus       152 ~v~~~~~sp~g-~~l~t~~~d~~i~iwd~~~~~~~~~~-----~~~i~~~~~sp~g~-----------~~~~~~~~~~~~  214 (378)
                      .|.+++|+|++ .+|++++.|++|+|||+++++++..+     ...+.+++|+|++.           ..+|+.....++
T Consensus       171 ~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~  250 (344)
T 4gqb_B          171 QVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCV  250 (344)
T ss_dssp             CEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CC
T ss_pred             ceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEE
Confidence            99999999987 47899999999999999999988877     24578999998654           267888888888


Q ss_pred             EEeeccCCcceeeeEEcCCC-CeEEEecCCCeEEEE
Q 046394          215 MGYSMVKGYQIGKVSFRPYE-DVLGIGHSMGVSGIL  249 (378)
Q Consensus       215 ~~~~~~~~~~v~~~~~sp~g-~~l~~~~~~g~~~~~  249 (378)
                      ..+.+ |...|++++|+|+| .+|++|+.||.+.+|
T Consensus       251 ~~~~~-h~~~v~~v~fsp~g~~~lasgs~D~~i~vw  285 (344)
T 4gqb_B          251 LSSAV-HSQCVTGLVFSPHSVPFLASLSEDCSLAVL  285 (344)
T ss_dssp             EEEEC-CSSCEEEEEECSSSSCCEEEEETTSCEEEE
T ss_pred             EEEcC-CCCCEEEEEEccCCCeEEEEEeCCCeEEEE
Confidence            88888 89999999999998 578889888876654

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.7e-30  Score=237.51  Aligned_cols=234  Identities=14%  Similarity=0.118  Sum_probs=199.1

Q ss_pred             eeeEEEeccceeeeeecccceeeEEeec-CCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeeccCCCe-eEEE
Q 046394           16 EKTWRIKQEAIAREVDILSSRNQYDIML-PELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKEHGEV-LKLQ   92 (378)
Q Consensus        16 ~~~~~~~~~~~i~~~d~~~~~~~~~l~~-~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~-~~l~   92 (378)
                      ...+.+..++.|++||+.+++....+.. |...|.+++|+|++.+|++|+.||.|++|| .++..+..+.+|... .++.
T Consensus       104 ~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~  183 (401)
T 4aez_A          104 LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLS  183 (401)
T ss_dssp             TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEE
T ss_pred             CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEE
Confidence            4577788899999999999998887776 788999999999999999999999999999 567788889888876 9999


Q ss_pred             E---EEEEEeCCCeEEEEEcC-CCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe--------------eeecCCCEE
Q 046394           93 F---LLASINKLGQLRYQNVT-MGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT--------------MLCHQGPVS  154 (378)
Q Consensus        93 ~---~l~s~~~d~~i~iwd~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~--------------~~~h~~~v~  154 (378)
                      |   .+++++.|+.|++||+. .+..+..+..|.+.|.+++|+|++.+|++++.|+.              +..|...|.
T Consensus       184 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~  263 (401)
T 4aez_A          184 WNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVK  263 (401)
T ss_dssp             EETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCC
T ss_pred             ECCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEE
Confidence            9   99999999999999998 46778888899999999999999999999999987              557899999


Q ss_pred             EEEEecCC-CEEEEEE--CCCeEEEEEcCCceeeeee--cCCceEEEEecCCCcc------------ccCCCCCceE--E
Q 046394          155 ALAFHPNG-HLMATSG--KDCKIKIWDLRKYEVLQTL--PGHAKTLDFSRKDSGD------------FSGSHNYNRY--M  215 (378)
Q Consensus       155 ~~~~sp~g-~~l~t~~--~d~~i~iwd~~~~~~~~~~--~~~i~~~~~sp~g~~~------------~~~~~~~~~~--~  215 (378)
                      +++|+|++ .++++++  .|+.|++||+.+++++..+  +..+.+++|+|+|.+.            +|+.......  .
T Consensus       264 ~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~  343 (401)
T 4aez_A          264 AVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQV  343 (401)
T ss_dssp             EEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEE
T ss_pred             EEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEE
Confidence            99999966 5566655  7999999999999999888  5789999999988764            3443332222  2


Q ss_pred             EeeccCCcceeeeEEcCCCCeEEEecCCCeEEEEE
Q 046394          216 GYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILI  250 (378)
Q Consensus       216 ~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~  250 (378)
                      .+.+ |...|.+++|+|+|.+|++++.||.+.+|-
T Consensus       344 ~~~~-h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~  377 (401)
T 4aez_A          344 DIPA-HDTRVLYSALSPDGRILSTAASDENLKFWR  377 (401)
T ss_dssp             EEEC-CSSCCCEEEECTTSSEEEEECTTSEEEEEE
T ss_pred             EecC-CCCCEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence            3445 788999999999998888887777655554

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=1.5e-30  Score=229.56  Aligned_cols=216  Identities=17%  Similarity=0.191  Sum_probs=183.4

Q ss_pred             ceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeeccCCCe-eEEEE-----EEEEEeCCCeEEEE
Q 046394           35 SRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKEHGEV-LKLQF-----LLASINKLGQLRYQ  107 (378)
Q Consensus        35 ~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~-~~l~~-----~l~s~~~d~~i~iw  107 (378)
                      ....+.+.+|...|.+++|+|+|++|++|+.||.|++|+ .++.....+.+|... .+++|     +|++++.|+.|++|
T Consensus        13 ~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vw   92 (312)
T 4ery_A           13 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW   92 (312)
T ss_dssp             CEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             ceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEE
Confidence            345678899999999999999999999999999999999 567778888888876 99999     99999999999999


Q ss_pred             EcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe--------------eeecCCCEEEEEEecCCCEEEEEECCCe
Q 046394          108 NVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT--------------MLCHQGPVSALAFHPNGHLMATSGKDCK  173 (378)
Q Consensus       108 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~--------------~~~h~~~v~~~~~sp~g~~l~t~~~d~~  173 (378)
                      |+.+++.+..+..|...|.+++|+|++.+|++++.|+.              +..|..+|.+++|+|++++|++++.|+.
T Consensus        93 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~  172 (312)
T 4ery_A           93 DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL  172 (312)
T ss_dssp             ETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             ECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCc
Confidence            99999999999999999999999999999999999987              5678899999999999999999999999


Q ss_pred             EEEEEcCCceeeeee----cCCceEEEEecCCCc----------cccCCCCCceEEEeeccCCcceee--eEEc-CCCCe
Q 046394          174 IKIWDLRKYEVLQTL----PGHAKTLDFSRKDSG----------DFSGSHNYNRYMGYSMVKGYQIGK--VSFR-PYEDV  236 (378)
Q Consensus       174 i~iwd~~~~~~~~~~----~~~i~~~~~sp~g~~----------~~~~~~~~~~~~~~~~~~~~~v~~--~~~s-p~g~~  236 (378)
                      |++||+++++.+..+    ...+..++|+|+|.+          .+|+......+..+.+ |...+..  ..|+ +++.+
T Consensus       173 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  251 (312)
T 4ery_A          173 CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG-HKNEKYCIFANFSVTGGKW  251 (312)
T ss_dssp             EEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECS-SCCSSSCCCEEEECSSSCE
T ss_pred             EEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEe-cCCceEEEEEEEEeCCCcE
Confidence            999999999888776    357899999998875          5677777777776666 4443322  2333 56777


Q ss_pred             EEEecCCCeEEEEEc
Q 046394          237 LGIGHSMGVSGILIP  251 (378)
Q Consensus       237 l~~~~~~g~~~~~~~  251 (378)
                      |++|+.||.+.+|..
T Consensus       252 l~sg~~dg~i~vwd~  266 (312)
T 4ery_A          252 IVSGSEDNLVYIWNL  266 (312)
T ss_dssp             EEECCTTSCEEEEET
T ss_pred             EEEECCCCEEEEEEC
Confidence            777777776665543

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=1.7e-30  Score=233.37  Aligned_cols=218  Identities=12%  Similarity=0.103  Sum_probs=185.6

Q ss_pred             eeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeeccCCCe-eEEEE-----EEEEEeCCCeEEEEE
Q 046394           36 RNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKEHGEV-LKLQF-----LLASINKLGQLRYQN  108 (378)
Q Consensus        36 ~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~-~~l~~-----~l~s~~~d~~i~iwd  108 (378)
                      .....+.+|...|++++|+|++++|++|+.||.|+||| .++.....+..|... .+++|     .+++++.|+.+++|+
T Consensus        55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~  134 (354)
T 2pbi_B           55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYP  134 (354)
T ss_dssp             CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEE
T ss_pred             EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEE
Confidence            45678999999999999999999999999999999999 667778888888765 89999     999999999999999


Q ss_pred             cCCC------cEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe--------------eeecCCCEEEEEEec--CCCEEE
Q 046394          109 VTMG------EIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT--------------MLCHQGPVSALAFHP--NGHLMA  166 (378)
Q Consensus       109 ~~~~------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~--------------~~~h~~~v~~~~~sp--~g~~l~  166 (378)
                      +...      .....+..|...|.+++|+|++..|++++.|+.              +.+|...|.+++|+|  +|++|+
T Consensus       135 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~  214 (354)
T 2pbi_B          135 LTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFV  214 (354)
T ss_dssp             CCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEE
T ss_pred             EeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEE
Confidence            8643      245567789999999999999999999999997              678999999999988  578999


Q ss_pred             EEECCCeEEEEEcCCceeeeee---cCCceEEEEecCCCc----------cccCCCCCceEEEeec-cCCcceeeeEEcC
Q 046394          167 TSGKDCKIKIWDLRKYEVLQTL---PGHAKTLDFSRKDSG----------DFSGSHNYNRYMGYSM-VKGYQIGKVSFRP  232 (378)
Q Consensus       167 t~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~~sp~g~~----------~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp  232 (378)
                      +++.|++|++||+++++++..+   ...|++++|+|+|.+          .+|+......+..+.. .+...+.+++|+|
T Consensus       215 sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~  294 (354)
T 2pbi_B          215 SGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSL  294 (354)
T ss_dssp             EEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECT
T ss_pred             EEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeC
Confidence            9999999999999999998888   368999999998764          6677666655554433 1234688999999


Q ss_pred             CCCeEEEecCCCeEEEEEcCC
Q 046394          233 YEDVLGIGHSMGVSGILIPGS  253 (378)
Q Consensus       233 ~g~~l~~~~~~g~~~~~~~~s  253 (378)
                      +|.+|++|+.||.+.+|....
T Consensus       295 ~g~~l~~g~~d~~i~vwd~~~  315 (354)
T 2pbi_B          295 SGRLLFAGYNDYTINVWDVLK  315 (354)
T ss_dssp             TSSEEEEEETTSCEEEEETTT
T ss_pred             CCCEEEEEECCCcEEEEECCC
Confidence            999999999998887776433

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=3.2e-30  Score=229.75  Aligned_cols=220  Identities=15%  Similarity=0.098  Sum_probs=176.7

Q ss_pred             ecccceeeEEeecCCCCceEEEEcCC-CCEEEEEeCCCcEEEEeCCC------CeEEeeccCCCe-eEEEE-----EEEE
Q 046394           31 DILSSRNQYDIMLPELGPYTLDFTSS-GRYMAAAGCKGYPYFYNRDG------TELHCSKEHGEV-LKLQF-----LLAS   97 (378)
Q Consensus        31 d~~~~~~~~~l~~~~~~v~~~~~sp~-g~~l~~~~~dg~i~iwd~~~------~~~~~~~~~~~~-~~l~~-----~l~s   97 (378)
                      ..++.....+|.+|.+.|++|+|+|+ +++||||+.||+|+|||+..      .+...+.+|... .+++|     +|++
T Consensus        24 ~~~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s  103 (340)
T 4aow_A           24 MTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALS  103 (340)
T ss_dssp             --CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred             cCCceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEE
Confidence            34445566789999999999999997 68999999999999999432      346778899876 99999     9999


Q ss_pred             EeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe--------------------------------
Q 046394           98 INKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT--------------------------------  145 (378)
Q Consensus        98 ~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~--------------------------------  145 (378)
                      ++.|+.|++|+............+...+..+.+++++.+|++++.|+.                                
T Consensus       104 ~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~  183 (340)
T 4aow_A          104 GSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNS  183 (340)
T ss_dssp             EETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCS
T ss_pred             EcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCC
Confidence            999999999999887776666666666666666666666666665554                                


Q ss_pred             ---------------------------eeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee--cCCceEEE
Q 046394          146 ---------------------------MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL--PGHAKTLD  196 (378)
Q Consensus       146 ---------------------------~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~--~~~i~~~~  196 (378)
                                                 +.+|.++|++++|+|++++|++++.|+.|++||+++.+++..+  +..+.++.
T Consensus       184 ~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~  263 (340)
T 4aow_A          184 SNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALC  263 (340)
T ss_dssp             SSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSSCEEEEE
T ss_pred             CCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCceEEeee
Confidence                                       5678999999999999999999999999999999999999888  67899999


Q ss_pred             EecCCCc---------cccCCCCCceEEEeec--------cCCcceeeeEEcCCCCeEEEecCCCeEEEEE
Q 046394          197 FSRKDSG---------DFSGSHNYNRYMGYSM--------VKGYQIGKVSFRPYEDVLGIGHSMGVSGILI  250 (378)
Q Consensus       197 ~sp~g~~---------~~~~~~~~~~~~~~~~--------~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~  250 (378)
                      |+|++.+         .+|+......+..+..        .|...|++++|+|+|++|++|+.||.+.+|-
T Consensus       264 ~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~  334 (340)
T 4aow_A          264 FSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQ  334 (340)
T ss_dssp             ECSSSSEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             cCCCCceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEe
Confidence            9998764         5666655544433321        2678899999999999988888888776664

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=4.3e-31  Score=237.56  Aligned_cols=223  Identities=10%  Similarity=0.076  Sum_probs=177.0

Q ss_pred             cceeeeeecccceee----EEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeC-CCCeE----EeeccCCCe-eEEEE
Q 046394           24 EAIAREVDILSSRNQ----YDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNR-DGTEL----HCSKEHGEV-LKLQF   93 (378)
Q Consensus        24 ~~~i~~~d~~~~~~~----~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~-~~~~~----~~~~~~~~~-~~l~~   93 (378)
                      |+.+++|+..++...    .....|..+|.+++|+|++. +++++.||.|+|||+ ++..+    ....+|... ++++|
T Consensus        69 d~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~  147 (357)
T 4g56_B           69 GGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSV  147 (357)
T ss_dssp             CEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEE
T ss_pred             cCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEE
Confidence            577888988776543    34457888999999999985 556788999999995 33332    234567765 99999


Q ss_pred             -----EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCC-EEEEEcCCCe----------------eeecCC
Q 046394           94 -----LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNG-VVSLGHSGGT----------------MLCHQG  151 (378)
Q Consensus        94 -----~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~d~~----------------~~~h~~  151 (378)
                           +|++++.|++|++||+.+++++..+..|...|.+++|+|++. ++++++.|+.                ...|..
T Consensus       148 spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~  227 (357)
T 4g56_B          148 FSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDT  227 (357)
T ss_dssp             CSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCS
T ss_pred             CCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccc
Confidence                 999999999999999999999999999999999999999985 7888988886                234667


Q ss_pred             CEEEEEEecC-CCEEEEEECCCeEEEEEcCCceeeeee---cCCceEEEEecCCCc-----------cccCCCCCceEEE
Q 046394          152 PVSALAFHPN-GHLMATSGKDCKIKIWDLRKYEVLQTL---PGHAKTLDFSRKDSG-----------DFSGSHNYNRYMG  216 (378)
Q Consensus       152 ~v~~~~~sp~-g~~l~t~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~~sp~g~~-----------~~~~~~~~~~~~~  216 (378)
                      .+.+++|+|+ +.+|++++.|+.|++||+++++++.++   ...|++++|+|++..           .+|+....+++..
T Consensus       228 ~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~  307 (357)
T 4g56_B          228 IPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRD  307 (357)
T ss_dssp             CEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEE
T ss_pred             cccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEE
Confidence            8999999996 578999999999999999999998888   478999999998742           6788777776654


Q ss_pred             eeccCCcceeeeEEcC-CCCeEEEecCCCeEEEE
Q 046394          217 YSMVKGYQIGKVSFRP-YEDVLGIGHSMGVSGIL  249 (378)
Q Consensus       217 ~~~~~~~~v~~~~~sp-~g~~l~~~~~~g~~~~~  249 (378)
                      . + |...|++|+|+| ++.+|++|+.||.+.+|
T Consensus       308 ~-~-H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW  339 (357)
T 4g56_B          308 L-S-HRDFVTGVAWSPLDHSKFTTVGWDHKVLHH  339 (357)
T ss_dssp             C-C-CSSCEEEEEECSSSTTEEEEEETTSCEEEE
T ss_pred             C-C-CCCCEEEEEEeCCCCCEEEEEcCCCeEEEE
Confidence            4 5 888999999999 78777777666644444

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=1.6e-31  Score=242.50  Aligned_cols=227  Identities=16%  Similarity=0.156  Sum_probs=190.5

Q ss_pred             cceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeeccCCCe-eEEEE-----EEE
Q 046394           24 EAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKEHGEV-LKLQF-----LLA   96 (378)
Q Consensus        24 ~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~-~~l~~-----~l~   96 (378)
                      ...+..|+..+......+.+|.+.|++++|+|++++|++|+.||+|+||| .++..+..+..|... .+++|     +++
T Consensus        45 ~~~~~~~~~~~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~la  124 (380)
T 3iz6_a           45 GRTAVSFNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVA  124 (380)
T ss_dssp             GGGCCCCCCCCCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEE
T ss_pred             cccccccccceeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEE
Confidence            44556688888888899999999999999999999999999999999999 567788889999876 88999     999


Q ss_pred             EEeCCCeEEEEEcCCCc-------EEEEEecCCCCeeEEEEcCCC-CEEEEEcCCCe--------------e-----eec
Q 046394           97 SINKLGQLRYQNVTMGE-------IVGNFWTGLGRTDVIRVNPFN-GVVSLGHSGGT--------------M-----LCH  149 (378)
Q Consensus        97 s~~~d~~i~iwd~~~~~-------~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~d~~--------------~-----~~h  149 (378)
                      +|+.|+.+++||+.+..       ....+.+|.+.+.++.|+|++ ..|++|+.|+.              +     .+|
T Consensus       125 s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h  204 (380)
T 3iz6_a          125 CGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGH  204 (380)
T ss_dssp             ECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSC
T ss_pred             EeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCC
Confidence            99999999999987532       344567889999999999975 57999999987              1     568


Q ss_pred             CCCEEEEEEec-CCCEEEEEECCCeEEEEEcCC-ceeeeee--c-CCceEEEEecCCCc----------cccCCCCCceE
Q 046394          150 QGPVSALAFHP-NGHLMATSGKDCKIKIWDLRK-YEVLQTL--P-GHAKTLDFSRKDSG----------DFSGSHNYNRY  214 (378)
Q Consensus       150 ~~~v~~~~~sp-~g~~l~t~~~d~~i~iwd~~~-~~~~~~~--~-~~i~~~~~sp~g~~----------~~~~~~~~~~~  214 (378)
                      ...|.+++|+| ++++|++|+.|++|++||++. +.++..+  | ..|++++|+|+|.+          .+|+......+
T Consensus       205 ~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~  284 (380)
T 3iz6_a          205 TADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQL  284 (380)
T ss_dssp             CSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEE
T ss_pred             ccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEE
Confidence            89999999987 889999999999999999984 5667777  3 78999999998874          67777777776


Q ss_pred             EEeecc------CCcceeeeEEcCCCCeEEEecCCCeEEEEE
Q 046394          215 MGYSMV------KGYQIGKVSFRPYEDVLGIGHSMGVSGILI  250 (378)
Q Consensus       215 ~~~~~~------~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~  250 (378)
                      ..+...      +...|++++|+|+|.+|++|+.+|.+.+|.
T Consensus       285 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd  326 (380)
T 3iz6_a          285 QVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWD  326 (380)
T ss_dssp             EEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEE
T ss_pred             EEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEE
Confidence            665441      112489999999999999999998776554

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=1.1e-30  Score=229.00  Aligned_cols=212  Identities=14%  Similarity=0.109  Sum_probs=174.7

Q ss_pred             EEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCC---CCeEEeeccCCCe-eEEEE-------EEEEEeCCCeEEEE
Q 046394           39 YDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRD---GTELHCSKEHGEV-LKLQF-------LLASINKLGQLRYQ  107 (378)
Q Consensus        39 ~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~---~~~~~~~~~~~~~-~~l~~-------~l~s~~~d~~i~iw  107 (378)
                      ..+.+|...|.+++|+|+|++||+|+.|+.|+|||..   ...+..+.+|.+. .+++|       +|++|+.|++|++|
T Consensus         3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW   82 (297)
T 2pm7_B            3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW   82 (297)
T ss_dssp             EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred             eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence            4567899999999999999999999999999999964   3567889999986 99998       89999999999999


Q ss_pred             EcCCCc--EEEEEecCCCCeeEEEEcCC--CCEEEEEcCCCe----------------eeecCCCEEEEEEecC------
Q 046394          108 NVTMGE--IVGNFWTGLGRTDVIRVNPF--NGVVSLGHSGGT----------------MLCHQGPVSALAFHPN------  161 (378)
Q Consensus       108 d~~~~~--~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~d~~----------------~~~h~~~v~~~~~sp~------  161 (378)
                      |+.+++  .+..+..|...|.+++|+|+  +.+|++++.|+.                +.+|...|.+++|+|+      
T Consensus        83 d~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~  162 (297)
T 2pm7_B           83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG  162 (297)
T ss_dssp             EBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC-----
T ss_pred             EcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccc
Confidence            998874  56677788999999999998  889999999986                3568889999999997      


Q ss_pred             -------CCEEEEEECCCeEEEEEcCCce----eeeee--c-CCceEEEEecCC---Cc----------cccCCCCCc--
Q 046394          162 -------GHLMATSGKDCKIKIWDLRKYE----VLQTL--P-GHAKTLDFSRKD---SG----------DFSGSHNYN--  212 (378)
Q Consensus       162 -------g~~l~t~~~d~~i~iwd~~~~~----~~~~~--~-~~i~~~~~sp~g---~~----------~~~~~~~~~--  212 (378)
                             +++|++++.|++|+|||++++.    +..++  | ..|.+++|+|++   .+          .+|+.....  
T Consensus       163 ~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~  242 (297)
T 2pm7_B          163 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGP  242 (297)
T ss_dssp             -------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSC
T ss_pred             cCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCc
Confidence                   5799999999999999998765    45556  3 679999999985   32          566544321  


Q ss_pred             -eEEEe--eccCCcceeeeEEcCCCCeEEEecCCCeEEEEEc
Q 046394          213 -RYMGY--SMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILIP  251 (378)
Q Consensus       213 -~~~~~--~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~~  251 (378)
                       .....  .. |...|.+++|+|+|.+||+++.||.+.+|-.
T Consensus       243 ~~~~~~~~~~-~~~~v~~~~~s~~g~~las~~~D~~v~lw~~  283 (297)
T 2pm7_B          243 WKKTLLKEEK-FPDVLWRASWSLSGNVLALSGGDNKVTLWKE  283 (297)
T ss_dssp             CEEEESSSSC-CSSCEEEEEECSSSCCEEEEETTSCEEEEEE
T ss_pred             cceeeeeccc-CCCcEEEEEECCCCCEEEEEcCCCcEEEEEE
Confidence             11112  23 6678999999999999998888887777653

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.3e-30  Score=230.14  Aligned_cols=235  Identities=14%  Similarity=0.114  Sum_probs=198.8

Q ss_pred             ceeeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeeccCCCeeEEEE
Q 046394           15 VEKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKEHGEVLKLQF   93 (378)
Q Consensus        15 ~~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~~~l~~   93 (378)
                      ....+....++.|++||+.+++.+..+.+|...|.+++|+|++++|++++.||.|++|| .++..+..+.....+.++.|
T Consensus        44 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~  123 (369)
T 3zwl_B           44 GDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEF  123 (369)
T ss_dssp             SCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSCEEEEEE
T ss_pred             CCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCeEEEEE
Confidence            34456667789999999999999999999999999999999999999999999999999 45677777774444599999


Q ss_pred             -----EEEEEeCC-----CeEEEEEcCCCc-----------EEEEEecCCC--CeeEEEEcCCCCEEEEEcCCCe-----
Q 046394           94 -----LLASINKL-----GQLRYQNVTMGE-----------IVGNFWTGLG--RTDVIRVNPFNGVVSLGHSGGT-----  145 (378)
Q Consensus        94 -----~l~s~~~d-----~~i~iwd~~~~~-----------~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~d~~-----  145 (378)
                           ++++++.+     +.|.+||+..+.           .+..+..+..  .+.+++|+|++.+|++++.++.     
T Consensus       124 ~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d  203 (369)
T 3zwl_B          124 SPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYD  203 (369)
T ss_dssp             CTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEE
T ss_pred             ccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEE
Confidence                 88888888     999999997653           3344445555  8999999999999999999987     


Q ss_pred             ----------eeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee--cCCceEEEEecCCCc----------
Q 046394          146 ----------MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL--PGHAKTLDFSRKDSG----------  203 (378)
Q Consensus       146 ----------~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~--~~~i~~~~~sp~g~~----------  203 (378)
                                +..|...|.+++|+|++++|++++.|+.|++||+++++.+..+  ...+.+++|+|++.+          
T Consensus       204 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  283 (369)
T 3zwl_B          204 VSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETDCPLNTAVITPLKEFIILGGGQEAK  283 (369)
T ss_dssp             TTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECCC--
T ss_pred             CCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeecCCCCceeEEecCCCceEEEeecCCCc
Confidence                      5678999999999999999999999999999999999998888  578999999998875          


Q ss_pred             --------------cccCCCCCceEEEeeccCCcceeeeEEcCCCCeEEEecCCCeEEEEE
Q 046394          204 --------------DFSGSHNYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILI  250 (378)
Q Consensus       204 --------------~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~  250 (378)
                                    .+|+.....++..+.+ |...|++++|+|+|.+|++++.||.+.+|.
T Consensus       284 ~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~  343 (369)
T 3zwl_B          284 DVTTTSANEGKFEARFYHKIFEEEIGRVQG-HFGPLNTVAISPQGTSYASGGEDGFIRLHH  343 (369)
T ss_dssp             -----------CEEEEEETTTCCEEEEEEC-CSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEecCCCcceeEEEecCCCcchhheec-ccCcEEEEEECCCCCEEEEEcCCCeEEEEE
Confidence                          3455556666777777 888999999999998888887777554443

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=9.6e-32  Score=241.80  Aligned_cols=225  Identities=12%  Similarity=0.128  Sum_probs=163.3

Q ss_pred             EEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeC------CCcEEEEe-CCCCeE----EeeccCCC-
Q 046394           20 RIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGC------KGYPYFYN-RDGTEL----HCSKEHGE-   87 (378)
Q Consensus        20 ~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~------dg~i~iwd-~~~~~~----~~~~~~~~-   87 (378)
                      ....+.....|++...    ...+|...|.+++|||||++||+|+.      |+.|++|+ .++...    .....|.. 
T Consensus        21 ~~~g~~~~~~w~~p~~----~p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~   96 (357)
T 4g56_B           21 QSNGSSKGSAWGRPVT----APACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAG   96 (357)
T ss_dssp             -----------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSC
T ss_pred             ecCCCccccccCCCCC----CcccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCC
Confidence            3334455677876433    33579999999999999999999997      67899998 343322    22334544 


Q ss_pred             eeEEEE----EEEEEeCCCeEEEEEcCCCcEEE----EEecCCCCeeEEEEcCCCCEEEEEcCCCe--------------
Q 046394           88 VLKLQF----LLASINKLGQLRYQNVTMGEIVG----NFWTGLGRTDVIRVNPFNGVVSLGHSGGT--------------  145 (378)
Q Consensus        88 ~~~l~~----~l~s~~~d~~i~iwd~~~~~~~~----~~~~~~~~v~~~~~s~~~~~l~~~~~d~~--------------  145 (378)
                      +.+++|    .+++++.||+|+|||+.+++...    ....|...|.+++|+|++++|++++.|+.              
T Consensus        97 V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~  176 (357)
T 4g56_B           97 VTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKS  176 (357)
T ss_dssp             EEEEEEETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred             EEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEE
Confidence            599999    77788999999999998876543    33468899999999999999999999997              


Q ss_pred             eeecCCCEEEEEEecCCC-EEEEEECCCeEEEEEcCCceeeeee-----cCCceEEEEecCCCc-----------cccCC
Q 046394          146 MLCHQGPVSALAFHPNGH-LMATSGKDCKIKIWDLRKYEVLQTL-----PGHAKTLDFSRKDSG-----------DFSGS  208 (378)
Q Consensus       146 ~~~h~~~v~~~~~sp~g~-~l~t~~~d~~i~iwd~~~~~~~~~~-----~~~i~~~~~sp~g~~-----------~~~~~  208 (378)
                      +.+|...|++++|+|++. ++++++.|++|+|||+++++++..+     ...+.+++|+|++..           .+|+.
T Consensus       177 ~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~  256 (357)
T 4g56_B          177 YNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNI  256 (357)
T ss_dssp             ECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEES
T ss_pred             EcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEEC
Confidence            668999999999999874 7899999999999999998887655     356899999997542           66777


Q ss_pred             CCCceEEEeeccCCcceeeeEEcCCC-CeEEEecCCCeEEEE
Q 046394          209 HNYNRYMGYSMVKGYQIGKVSFRPYE-DVLGIGHSMGVSGIL  249 (378)
Q Consensus       209 ~~~~~~~~~~~~~~~~v~~~~~sp~g-~~l~~~~~~g~~~~~  249 (378)
                      ....++..+.+ |...|++++|+|++ .+||+|+.||.+.+|
T Consensus       257 ~~~~~~~~~~~-~~~~v~~l~~sp~~~~~lasgs~D~~i~iw  297 (357)
T 4g56_B          257 KNPDSAQTSAV-HSQNITGLAYSYHSSPFLASISEDCTVAVL  297 (357)
T ss_dssp             SCGGGCEEECC-CSSCEEEEEECSSSSCCEEEEETTSCEEEE
T ss_pred             CCCcEeEEEec-cceeEEEEEEcCCCCCEEEEEeCCCEEEEE
Confidence            77777888877 88899999999998 578888888866655

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.98  E-value=9.1e-31  Score=241.89  Aligned_cols=223  Identities=14%  Similarity=0.135  Sum_probs=176.0

Q ss_pred             eEEEeccceeeeeeccccee--eEEeecCCCCceEEEEcC-CCCEEEEEeCCCcEEEEeCCCCeEEeeccCCC----eeE
Q 046394           18 TWRIKQEAIAREVDILSSRN--QYDIMLPELGPYTLDFTS-SGRYMAAAGCKGYPYFYNRDGTELHCSKEHGE----VLK   90 (378)
Q Consensus        18 ~~~~~~~~~i~~~d~~~~~~--~~~l~~~~~~v~~~~~sp-~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~~~   90 (378)
                      .+....|+.|++||+.++..  ...+.+|.+.|++|+|+| ++.+|++|+.||+|++||+.+..+..+..+..    +.+
T Consensus       135 lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~  214 (435)
T 4e54_B          135 VAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCS  214 (435)
T ss_dssp             EEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCC
T ss_pred             EEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEE
Confidence            44566789999999987754  345568999999999998 68999999999999999988777766554432    267


Q ss_pred             EEE-----EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCC-EEEEEcCCCe-----------------ee
Q 046394           91 LQF-----LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNG-VVSLGHSGGT-----------------ML  147 (378)
Q Consensus        91 l~~-----~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~d~~-----------------~~  147 (378)
                      ++|     +|++|+.||.|++||+. ++.+..+..|...|.+++|+|++. +|++++.|+.                 ..
T Consensus       215 ~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~  293 (435)
T 4e54_B          215 LDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSL  293 (435)
T ss_dssp             EEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCC
T ss_pred             EEECCCCCEEEEEeCCCcEeeeccC-cceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEee
Confidence            888     99999999999999985 556677888999999999999986 7888998887                 35


Q ss_pred             ecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee--c-------CCc-----------eEEEEecCCCc----
Q 046394          148 CHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL--P-------GHA-----------KTLDFSRKDSG----  203 (378)
Q Consensus       148 ~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~--~-------~~i-----------~~~~~sp~g~~----  203 (378)
                      +|...|++++|+|+|++|++++.|++|+|||+.++.+...+  +       ..+           ..+.+++++..    
T Consensus       294 ~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  373 (435)
T 4e54_B          294 PHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCT  373 (435)
T ss_dssp             BCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSS
T ss_pred             eccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEE
Confidence            78999999999999999999999999999999988776554  1       112           23334444432    


Q ss_pred             -------cccCCCCCceEEEeeccCCcceeee-EEcCCCCeEEEec
Q 046394          204 -------DFSGSHNYNRYMGYSMVKGYQIGKV-SFRPYEDVLGIGH  241 (378)
Q Consensus       204 -------~~~~~~~~~~~~~~~~~~~~~v~~~-~~sp~g~~l~~~~  241 (378)
                             .+|+..++..+..+..+|...|.++ +|+|+|.+|++|+
T Consensus       374 ~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~  419 (435)
T 4e54_B          374 PYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM  419 (435)
T ss_dssp             TTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC
T ss_pred             ecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc
Confidence                   4566666666666554477888887 6999998777664

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.98  E-value=8.4e-30  Score=227.96  Aligned_cols=212  Identities=13%  Similarity=0.112  Sum_probs=175.2

Q ss_pred             eeeEEeecCCCCceEEEE-----cC-CCCEEEEEeCCCcEEEEeCC--------CCeEEeeccCCCe-eEEEE-----EE
Q 046394           36 RNQYDIMLPELGPYTLDF-----TS-SGRYMAAAGCKGYPYFYNRD--------GTELHCSKEHGEV-LKLQF-----LL   95 (378)
Q Consensus        36 ~~~~~l~~~~~~v~~~~~-----sp-~g~~l~~~~~dg~i~iwd~~--------~~~~~~~~~~~~~-~~l~~-----~l   95 (378)
                      .....+.+|...|++++|     +| ++.+|++|+.|++|++||..        +.+...+.+|... .+++|     ++
T Consensus        12 ~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l   91 (343)
T 2xzm_R           12 VKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFA   91 (343)
T ss_dssp             EEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEE
T ss_pred             eeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEE
Confidence            446678999999999999     77 89999999999999999953        2356778899876 99999     89


Q ss_pred             EEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe----------------eeecCCCEEEEEEe
Q 046394           96 ASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT----------------MLCHQGPVSALAFH  159 (378)
Q Consensus        96 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~----------------~~~h~~~v~~~~~s  159 (378)
                      ++++.|++|++||+.+++.+..+..|...|.+++|+|++.+|++++.|+.                ..+|...|.+++|+
T Consensus        92 ~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~  171 (343)
T 2xzm_R           92 ISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYS  171 (343)
T ss_dssp             EEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEEC
T ss_pred             EEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeec
Confidence            99999999999999999999999999999999999999999999999987                11688899999999


Q ss_pred             cCC----------CEEEEEECCCeEEEEEcCCceeeeee---cCCceEEEEecCCCc----------cccCCC-CCceEE
Q 046394          160 PNG----------HLMATSGKDCKIKIWDLRKYEVLQTL---PGHAKTLDFSRKDSG----------DFSGSH-NYNRYM  215 (378)
Q Consensus       160 p~g----------~~l~t~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~~sp~g~~----------~~~~~~-~~~~~~  215 (378)
                      |++          .+|++++.|++|++||. .+.....+   ...|.+++|+|+|.+          .+|+.. ...+..
T Consensus       172 ~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~  250 (343)
T 2xzm_R          172 PIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQR  250 (343)
T ss_dssp             CCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSE
T ss_pred             cccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccce
Confidence            987          79999999999999994 45666666   478999999999885          556652 222333


Q ss_pred             EeeccCCcceeeeEEcCCCCeEEEecCCCeEEEEEc
Q 046394          216 GYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILIP  251 (378)
Q Consensus       216 ~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~~  251 (378)
                      .+.  +...|.+++|+|++.+|+++.++ .+.+|..
T Consensus       251 ~~~--~~~~v~~v~~sp~~~~la~~~d~-~v~iw~~  283 (343)
T 2xzm_R          251 EFD--AGSTINQIAFNPKLQWVAVGTDQ-GVKIFNL  283 (343)
T ss_dssp             EEE--CSSCEEEEEECSSSCEEEEEESS-CEEEEES
T ss_pred             eec--CCCcEEEEEECCCCCEEEEECCC-CEEEEEe
Confidence            332  45569999999999888776544 4566654

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.97  E-value=5.1e-29  Score=219.27  Aligned_cols=229  Identities=15%  Similarity=0.037  Sum_probs=198.1

Q ss_pred             ceeeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCC----CCeEEeeccCCCe-e
Q 046394           15 VEKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRD----GTELHCSKEHGEV-L   89 (378)
Q Consensus        15 ~~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~----~~~~~~~~~~~~~-~   89 (378)
                      ....+....++.|++||+.++.....+..|...|.+++|+|++.+|++|+.||.|++|++.    +..+..+.+|... .
T Consensus        29 ~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~  108 (313)
T 3odt_A           29 DSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVC  108 (313)
T ss_dssp             TTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEE
T ss_pred             CCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEE
Confidence            3456777889999999999999999999999999999999999999999999999999942    3456778888876 9


Q ss_pred             EEEE---EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcC-CCCEEEEEcCCCe------------eee-cCCC
Q 046394           90 KLQF---LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNP-FNGVVSLGHSGGT------------MLC-HQGP  152 (378)
Q Consensus        90 ~l~~---~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~------------~~~-h~~~  152 (378)
                      ++.|   ++++++.|+.|++||  .+..+..+..|...+.+++|+| ++..+++++.++.            +.. |...
T Consensus       109 ~~~~~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~  186 (313)
T 3odt_A          109 SLSFQDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDKVIKTFSGIHNDV  186 (313)
T ss_dssp             EEEEETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTEEEEEECSSCSSC
T ss_pred             EEEecCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecCceEEEEeccCccc
Confidence            9999   999999999999999  7788888999999999999998 8999999999987            334 8899


Q ss_pred             EEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee---cCCceEEEEecCCCc---------cccCCCCCceEEEeecc
Q 046394          153 VSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL---PGHAKTLDFSRKDSG---------DFSGSHNYNRYMGYSMV  220 (378)
Q Consensus       153 v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~~sp~g~~---------~~~~~~~~~~~~~~~~~  220 (378)
                      |.+++|+|++. +++++.|+.|++||+++++++..+   ...+++++|+|+|.+         .+|+.....++..+.. 
T Consensus       187 i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~-  264 (313)
T 3odt_A          187 VRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNGDIVSCGEDRTVRIWSKENGSLKQVITL-  264 (313)
T ss_dssp             EEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSCEEEEETTSEEEEECTTTCCEEEEEEC-
T ss_pred             EEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCCCEEEEecCCEEEEEECCCCceeEEEec-
Confidence            99999999998 999999999999999999998888   478999999998753         7888888888888887 


Q ss_pred             CCcceeeeEEcCCCCeEEEecCCCeEEE
Q 046394          221 KGYQIGKVSFRPYEDVLGIGHSMGVSGI  248 (378)
Q Consensus       221 ~~~~v~~~~~sp~g~~l~~~~~~g~~~~  248 (378)
                      |..+|.+++|+|++. +++++.||.+.+
T Consensus       265 ~~~~i~~~~~~~~~~-~~~~~~dg~i~i  291 (313)
T 3odt_A          265 PAISIWSVDCMSNGD-IIVGSSDNLVRI  291 (313)
T ss_dssp             SSSCEEEEEECTTSC-EEEEETTSCEEE
T ss_pred             cCceEEEEEEccCCC-EEEEeCCCcEEE
Confidence            888999999999996 334555553333

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.97  E-value=8e-29  Score=220.20  Aligned_cols=230  Identities=10%  Similarity=0.037  Sum_probs=192.6

Q ss_pred             eEEEeccceeeeeeccccee---eEEee--cCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCC-C--eEEeeccCCCe-
Q 046394           18 TWRIKQEAIAREVDILSSRN---QYDIM--LPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDG-T--ELHCSKEHGEV-   88 (378)
Q Consensus        18 ~~~~~~~~~i~~~d~~~~~~---~~~l~--~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~-~--~~~~~~~~~~~-   88 (378)
                      .+....++.+++||+.++..   ...+.  .|...|.+++|+|++++|++++.||.|++||... .  ....+..|... 
T Consensus        65 ~l~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i  144 (337)
T 1gxr_A           65 HVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPAC  144 (337)
T ss_dssp             EEEEECBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCE
T ss_pred             EEEEcCCCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCce
Confidence            33344489999999987753   33333  7888999999999999999999999999999544 3  45667777765 


Q ss_pred             eEEEE-----EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe-------------eeecC
Q 046394           89 LKLQF-----LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT-------------MLCHQ  150 (378)
Q Consensus        89 ~~l~~-----~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~-------------~~~h~  150 (378)
                      .+++|     ++++++.|+.|++||+.+++.+..+..|...+.+++|+|++.+|++++.++.             ...|.
T Consensus       145 ~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~  224 (337)
T 1gxr_A          145 YALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFT  224 (337)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECS
T ss_pred             EEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecCC
Confidence            89999     8999999999999999999999999999999999999999999999999988             34578


Q ss_pred             CCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee--cCCceEEEEecCCCc----------cccCCCCCceEEEee
Q 046394          151 GPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL--PGHAKTLDFSRKDSG----------DFSGSHNYNRYMGYS  218 (378)
Q Consensus       151 ~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~--~~~i~~~~~sp~g~~----------~~~~~~~~~~~~~~~  218 (378)
                      ..+.+++|+|++++|++++.|+.|++||+.++......  ...+.+++|+|+|.+          .+|+......+... 
T Consensus       225 ~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~-  303 (337)
T 1gxr_A          225 SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-  303 (337)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-
T ss_pred             CceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEe-
Confidence            89999999999999999999999999999988765444  478999999998875          56666666665433 


Q ss_pred             ccCCcceeeeEEcCCCCeEEEecCCCeEEEE
Q 046394          219 MVKGYQIGKVSFRPYEDVLGIGHSMGVSGIL  249 (378)
Q Consensus       219 ~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~  249 (378)
                      . |...|.++.|+|++.+|++++.||.+.+|
T Consensus       304 ~-~~~~v~~~~~s~~~~~l~~~~~dg~i~iw  333 (337)
T 1gxr_A          304 K-ESSSVLSCDISVDDKYIVTGSGDKKATVY  333 (337)
T ss_dssp             E-CSSCEEEEEECTTSCEEEEEETTSCEEEE
T ss_pred             c-CCCcEEEEEECCCCCEEEEecCCCeEEEE
Confidence            2 67889999999999888888888766555

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.97  E-value=3.1e-29  Score=227.54  Aligned_cols=233  Identities=13%  Similarity=0.058  Sum_probs=193.4

Q ss_pred             eeeEEEeccceeeeeecccceeeEEee--cCCCCceEEEEcC-CCCEEEEEeCCCcEEEEeCCCCeEEeeccCC---C-e
Q 046394           16 EKTWRIKQEAIAREVDILSSRNQYDIM--LPELGPYTLDFTS-SGRYMAAAGCKGYPYFYNRDGTELHCSKEHG---E-V   88 (378)
Q Consensus        16 ~~~~~~~~~~~i~~~d~~~~~~~~~l~--~~~~~v~~~~~sp-~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~-~   88 (378)
                      ...+....++.|++||+.++.....+.  +|...|.+++|+| ++.+|++++.||.|++||..+..+..+..+.   . +
T Consensus        87 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v  166 (383)
T 3ei3_B           87 TTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTDSWDYWY  166 (383)
T ss_dssp             TEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCEEEEEECCCCSSCCE
T ss_pred             CEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCceEEEeccCCCCCCe
Confidence            456677788999999999888777665  6999999999999 7799999999999999998888887776654   3 4


Q ss_pred             eEEEE-----EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCC-EEEEEcCCCe-----------------
Q 046394           89 LKLQF-----LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNG-VVSLGHSGGT-----------------  145 (378)
Q Consensus        89 ~~l~~-----~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~d~~-----------------  145 (378)
                      .+++|     +|++++.|+.|++||+ +++.+..+..|...|.+++|+|++. +|++++.|+.                 
T Consensus       167 ~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~  245 (383)
T 3ei3_B          167 CCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIA  245 (383)
T ss_dssp             EEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEE
T ss_pred             EEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEE
Confidence            88999     9999999999999999 6888899999999999999999998 9999999987                 


Q ss_pred             eeecCCCEEEEEEec-CCCEEEEEECCCeEEEEEcCCceeeeee--c------------------CCceEEEEecC----
Q 046394          146 MLCHQGPVSALAFHP-NGHLMATSGKDCKIKIWDLRKYEVLQTL--P------------------GHAKTLDFSRK----  200 (378)
Q Consensus       146 ~~~h~~~v~~~~~sp-~g~~l~t~~~d~~i~iwd~~~~~~~~~~--~------------------~~i~~~~~sp~----  200 (378)
                      ..+|...|.+++|+| +|.+|++++.|+.|++||++++..+..+  +                  ..+..++|+|+    
T Consensus       246 ~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~s  325 (383)
T 3ei3_B          246 EMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQLL  325 (383)
T ss_dssp             EEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTTC
T ss_pred             EecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCcccc
Confidence            347899999999999 9999999999999999999987775554  1                  22344667664    


Q ss_pred             ----CCccccCCCCCceEEEeecc-CCcceeeeEEcCCCCeEEEecCCCeEEEEE
Q 046394          201 ----DSGDFSGSHNYNRYMGYSMV-KGYQIGKVSFRPYEDVLGIGHSMGVSGILI  250 (378)
Q Consensus       201 ----g~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~  250 (378)
                          |...+|+..+...+..+.++ +...+..++|+|+|.+|++|+ ||.+.+|-
T Consensus       326 ~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~  379 (383)
T 3ei3_B          326 LNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWN  379 (383)
T ss_dssp             TTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEE
T ss_pred             cCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEe
Confidence                44578888788887777652 356677779999998888775 66555543

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.97  E-value=2.2e-29  Score=229.51  Aligned_cols=207  Identities=15%  Similarity=0.163  Sum_probs=172.9

Q ss_pred             cCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeeccCCC-------------------eeEEEE-----EEEE
Q 046394           43 LPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKEHGE-------------------VLKLQF-----LLAS   97 (378)
Q Consensus        43 ~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~-------------------~~~l~~-----~l~s   97 (378)
                      .|...|.+++|||+|++||+|+ ++.+++|+ .++..+..+..+..                   +.+++|     +|++
T Consensus        62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s  140 (393)
T 1erj_A           62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT  140 (393)
T ss_dssp             ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred             CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence            6899999999999999999986 68999999 56677666655431                   478889     9999


Q ss_pred             EeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe-------------eeecCCCEEEEEEec-CCC
Q 046394           98 INKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT-------------MLCHQGPVSALAFHP-NGH  163 (378)
Q Consensus        98 ~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~-------------~~~h~~~v~~~~~sp-~g~  163 (378)
                      |+.|++|++||+.+++.+..+.+|...|.+++|+|++.+|++++.|+.             ...+...+.+++|+| +++
T Consensus       141 ~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~  220 (393)
T 1erj_A          141 GAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGK  220 (393)
T ss_dssp             EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCC
T ss_pred             EcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEEEECCCCC
Confidence            999999999999999999999999999999999999999999999998             234677899999999 899


Q ss_pred             EEEEEECCCeEEEEEcCCceeeeee----------cCCceEEEEecCCCc----------cccCCCC------------C
Q 046394          164 LMATSGKDCKIKIWDLRKYEVLQTL----------PGHAKTLDFSRKDSG----------DFSGSHN------------Y  211 (378)
Q Consensus       164 ~l~t~~~d~~i~iwd~~~~~~~~~~----------~~~i~~~~~sp~g~~----------~~~~~~~------------~  211 (378)
                      +|++++.|+.|++||++++.++..+          ...|.+++|+|+|.+          .+|+...            .
T Consensus       221 ~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~  300 (393)
T 1erj_A          221 YIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSG  300 (393)
T ss_dssp             EEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------
T ss_pred             EEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCC
Confidence            9999999999999999998877655          256899999999875          4555432            2


Q ss_pred             ceEEEeeccCCcceeeeEEcCCCCeEEEecCCCeEEEEEc
Q 046394          212 NRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILIP  251 (378)
Q Consensus       212 ~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~~  251 (378)
                      .....+.+ |...|.+++|+|++.+|++|+.||.+.+|..
T Consensus       301 ~~~~~~~~-h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~  339 (393)
T 1erj_A          301 TCEVTYIG-HKDFVLSVATTQNDEYILSGSKDRGVLFWDK  339 (393)
T ss_dssp             CEEEEEEC-CSSCEEEEEECGGGCEEEEEETTSEEEEEET
T ss_pred             cceEEEec-ccCcEEEEEECCCCCEEEEEeCCCeEEEEEC
Confidence            23445556 8888999999999999999999997765543

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.97  E-value=5.8e-31  Score=238.31  Aligned_cols=210  Identities=10%  Similarity=0.121  Sum_probs=173.8

Q ss_pred             eecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCC-C--CeEEeeccCCCe-eEEEE-----EEEEEeCCCeEEEEEcCC
Q 046394           41 IMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRD-G--TELHCSKEHGEV-LKLQF-----LLASINKLGQLRYQNVTM  111 (378)
Q Consensus        41 l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~-~--~~~~~~~~~~~~-~~l~~-----~l~s~~~d~~i~iwd~~~  111 (378)
                      +..+...|++++|+|+|++|++|+.||.|+|||.. +  ..+..+.+|... .+++|     +|++++.|++|++||+.+
T Consensus         7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~   86 (377)
T 3dwl_C            7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRP   86 (377)
T ss_dssp             EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC----
T ss_pred             EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCC
Confidence            44566799999999999999999999999999954 4  566778888876 99999     899999999999999998


Q ss_pred             Cc---EEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe-----------------eee-cCCCEEEEEEecCCCEEEEEEC
Q 046394          112 GE---IVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT-----------------MLC-HQGPVSALAFHPNGHLMATSGK  170 (378)
Q Consensus       112 ~~---~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~-----------------~~~-h~~~v~~~~~sp~g~~l~t~~~  170 (378)
                      +.   ....+..|...|.+++|+|++.+|++++.|+.                 +.. |...|.+++|+|++++|++++.
T Consensus        87 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~  166 (377)
T 3dwl_C           87 DGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCA  166 (377)
T ss_dssp             --CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEES
T ss_pred             CCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeC
Confidence            77   67777789999999999999999999999887                 334 8999999999999999999999


Q ss_pred             CCeEEEEEcC------------------Cceeeeee--cCCceEEEEecCCCc----------cccCCCCCce----EEE
Q 046394          171 DCKIKIWDLR------------------KYEVLQTL--PGHAKTLDFSRKDSG----------DFSGSHNYNR----YMG  216 (378)
Q Consensus       171 d~~i~iwd~~------------------~~~~~~~~--~~~i~~~~~sp~g~~----------~~~~~~~~~~----~~~  216 (378)
                      |++|++||+.                  .++++..+  ...+.+++|+|+|.+          .+|+......    +..
T Consensus       167 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~  246 (377)
T 3dwl_C          167 DRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALIT  246 (377)
T ss_dssp             SSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCC
T ss_pred             CCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEe
Confidence            9999999995                  34555555  467999999999875          6777666665    666


Q ss_pred             eeccCCcceeeeEEcCCCCeEEEecCCCeEEEEEc
Q 046394          217 YSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILIP  251 (378)
Q Consensus       217 ~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~~  251 (378)
                      +.+ |..+|.+++|+|+|.+|++|+.++.+.++..
T Consensus       247 ~~~-~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~  280 (377)
T 3dwl_C          247 VKL-SQLPLRSLLWANESAIVAAGYNYSPILLQGN  280 (377)
T ss_dssp             EEC-SSSCEEEEEEEETTEEEEEESSSSEEEECCC
T ss_pred             ecC-CCCceEEEEEcCCCCEEEEEcCCcEEEEEeC
Confidence            777 8889999999999999999998887754443

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.97  E-value=1.1e-28  Score=217.67  Aligned_cols=232  Identities=13%  Similarity=0.134  Sum_probs=195.0

Q ss_pred             eeEEEeccceeeeeecccceeeEEee--cCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeeccCCCe-eEEE
Q 046394           17 KTWRIKQEAIAREVDILSSRNQYDIM--LPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKEHGEV-LKLQ   92 (378)
Q Consensus        17 ~~~~~~~~~~i~~~d~~~~~~~~~l~--~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~-~~l~   92 (378)
                      ..+.+..|+.|++||+.+++.+..+.  .|...|.+++|+|+|++|++|+.||.|++|| .++..+..+.+|... .++.
T Consensus        37 ~~lAvg~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~  116 (318)
T 4ggc_A           37 NVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLS  116 (318)
T ss_dssp             SEEEEEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEE
T ss_pred             CEEEEEeCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEee
Confidence            35667779999999999998877665  5677899999999999999999999999999 567788889999876 7777


Q ss_pred             E---EEEEEeCCCeEEEEEcCCC-cEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe------------------eeecC
Q 046394           93 F---LLASINKLGQLRYQNVTMG-EIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT------------------MLCHQ  150 (378)
Q Consensus        93 ~---~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~------------------~~~h~  150 (378)
                      +   .+++++.++.+.+|+.... ..+..+..|...+..+.+++++.+|++++.|+.                  ...|.
T Consensus       117 ~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~  196 (318)
T 4ggc_A          117 WNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQ  196 (318)
T ss_dssp             EETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCC
T ss_pred             cCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccC
Confidence            7   9999999999999999875 466778889999999999999999999999987                  34567


Q ss_pred             CCEEEEEEecCCCE-E--EEEECCCeEEEEEcCCceeeeee--cCCceEEEEecCCC------------ccccCCCCCce
Q 046394          151 GPVSALAFHPNGHL-M--ATSGKDCKIKIWDLRKYEVLQTL--PGHAKTLDFSRKDS------------GDFSGSHNYNR  213 (378)
Q Consensus       151 ~~v~~~~~sp~g~~-l--~t~~~d~~i~iwd~~~~~~~~~~--~~~i~~~~~sp~g~------------~~~~~~~~~~~  213 (378)
                      +.|.+++++|++.. +  ++++.+++|++||..........  ...+..+.|+|++.            ..+|+..+..+
T Consensus       197 ~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~  276 (318)
T 4ggc_A          197 GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAK  276 (318)
T ss_dssp             SCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCE
T ss_pred             CceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcE
Confidence            88999999996543 3  35667899999999988877666  56778888877654            47788888889


Q ss_pred             EEEeeccCCcceeeeEEcCCCCeEEEecCCCeEEEE
Q 046394          214 YMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGIL  249 (378)
Q Consensus       214 ~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~  249 (378)
                      +..+.+ |..+|++++|+|+|.+|++|+.||.+.+|
T Consensus       277 ~~~l~g-H~~~V~~l~~spdg~~l~S~s~D~~v~iW  311 (318)
T 4ggc_A          277 VAELKG-HTSRVLSLTMSPDGATVASAAADETLRLW  311 (318)
T ss_dssp             EEEECC-CSSCEEEEEECTTSSCEEEEETTTEEEEE
T ss_pred             EEEEcC-CCCCEEEEEEcCCCCEEEEEecCCeEEEE
Confidence            999988 99999999999999888777777654444

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2.8e-29  Score=230.29  Aligned_cols=232  Identities=13%  Similarity=0.135  Sum_probs=194.7

Q ss_pred             eeEEEeccceeeeeec----ccce------eeEEeec----------CCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 046394           17 KTWRIKQEAIAREVDI----LSSR------NQYDIML----------PELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDG   76 (378)
Q Consensus        17 ~~~~~~~~~~i~~~d~----~~~~------~~~~l~~----------~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~   76 (378)
                      ..+....++.+++||+    .+++      ....+..          |...|.+++|+|++++|++|+.||.|++||.++
T Consensus        60 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~~~  139 (425)
T 1r5m_A           60 ILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWNKTG  139 (425)
T ss_dssp             EEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEEEEETTSCEEEEETTS
T ss_pred             EEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Confidence            5566677899999999    8887      4555555          677999999999999999999999999999989


Q ss_pred             CeEEeeccCCCe-eEEEE-----EEEEEeCCCeEEEEEcCCCcEEEEEecCCCC---------------eeEEEEcCCCC
Q 046394           77 TELHCSKEHGEV-LKLQF-----LLASINKLGQLRYQNVTMGEIVGNFWTGLGR---------------TDVIRVNPFNG  135 (378)
Q Consensus        77 ~~~~~~~~~~~~-~~l~~-----~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~---------------v~~~~~s~~~~  135 (378)
                      ..+..+..|... .+++|     +|++++.|+.|++||+.+++.+..+..+...               +.+++|+|++.
T Consensus       140 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (425)
T 1r5m_A          140 ALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDK  219 (425)
T ss_dssp             CEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTE
T ss_pred             CeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCE
Confidence            999999999876 99999     8999999999999999999999988877766               99999999865


Q ss_pred             EEEEEcCCCe--------------eeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee---cCCceEEEEe
Q 046394          136 VVSLGHSGGT--------------MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL---PGHAKTLDFS  198 (378)
Q Consensus       136 ~l~~~~~d~~--------------~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~~s  198 (378)
                       +++++.++.              +..|...|.+++|+|++++|++++.|+.|++||+++++++..+   ...+.+++|+
T Consensus       220 -~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~  298 (425)
T 1r5m_A          220 -FVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWV  298 (425)
T ss_dssp             -EEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEE
T ss_pred             -EEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEEC
Confidence             667776665              5578999999999999999999999999999999999888887   4789999999


Q ss_pred             cCCC---------ccccCCCCCceEEEeeccCCcceeeeEEcCCCCeEEEecCCCeEEEEE
Q 046394          199 RKDS---------GDFSGSHNYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILI  250 (378)
Q Consensus       199 p~g~---------~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~  250 (378)
                      |++.         ..+|+......+..+.. |..+|.+++|+|++.+|++++.+|.+.+|.
T Consensus       299 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~  358 (425)
T 1r5m_A          299 GDDKVISCSMDGSVRLWSLKQNTLLALSIV-DGVPIFAGRISQDGQKYAVAFMDGQVNVYD  358 (425)
T ss_dssp             TTTEEEEEETTSEEEEEETTTTEEEEEEEC-TTCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             CCCEEEEEeCCCcEEEEECCCCcEeEeccc-CCccEEEEEEcCCCCEEEEEECCCeEEEEE
Confidence            9873         26777777778877777 888999999999999988888887666654

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.3e-28  Score=221.50  Aligned_cols=227  Identities=11%  Similarity=0.186  Sum_probs=186.4

Q ss_pred             ceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeeccCCCe-eEEEE-----EEEEEeCCCeEEEE
Q 046394           35 SRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKEHGEV-LKLQF-----LLASINKLGQLRYQ  107 (378)
Q Consensus        35 ~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~-~~l~~-----~l~s~~~d~~i~iw  107 (378)
                      ......+.+|...|.+++|+|+|++|++|+.||.|++|| .++..+..+.+|... .+++|     +|++++.|+.|++|
T Consensus        22 ~~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw  101 (369)
T 3zwl_B           22 HMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLW  101 (369)
T ss_dssp             SEEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEE
T ss_pred             ccccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence            345677899999999999999999999999999999999 577888899999876 99999     99999999999999


Q ss_pred             EcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCC-----Ce-------------------------eeecCC--CEEE
Q 046394          108 NVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSG-----GT-------------------------MLCHQG--PVSA  155 (378)
Q Consensus       108 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----~~-------------------------~~~h~~--~v~~  155 (378)
                      |+.+++.+..+. +...+.+++|+|++.++++++.+     +.                         +..|.+  .+.+
T Consensus       102 d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (369)
T 3zwl_B          102 DVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATV  180 (369)
T ss_dssp             ETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEE
T ss_pred             ECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeE
Confidence            999999998887 78899999999999999999888     55                         333444  8999


Q ss_pred             EEEecCCCEEEEEECCCeEEEEEcCC-ceeeeee---cCCceEEEEecCCCc----------cccCCCCCceEEEeeccC
Q 046394          156 LAFHPNGHLMATSGKDCKIKIWDLRK-YEVLQTL---PGHAKTLDFSRKDSG----------DFSGSHNYNRYMGYSMVK  221 (378)
Q Consensus       156 ~~~sp~g~~l~t~~~d~~i~iwd~~~-~~~~~~~---~~~i~~~~~sp~g~~----------~~~~~~~~~~~~~~~~~~  221 (378)
                      ++|+|++++|++++.||.|++||+++ +..+..+   ...+.+++|+|++.+          .+|+......+..+.  +
T Consensus       181 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~--~  258 (369)
T 3zwl_B          181 AGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE--T  258 (369)
T ss_dssp             EEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE--C
T ss_pred             EEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec--C
Confidence            99999999999999999999999998 7777777   478999999998875          567777777666665  4


Q ss_pred             CcceeeeEEcCCCCeEEEecCCCeEEEEEcCCCCc--ccccccCC
Q 046394          222 GYQIGKVSFRPYEDVLGIGHSMGVSGILIPGSGEP--NFDSWVAN  264 (378)
Q Consensus       222 ~~~v~~~~~sp~g~~l~~~~~~g~~~~~~~~s~d~--~i~~w~~~  264 (378)
                      ...+..+.|+|++.++++++.++...++.....++  .+++|+..
T Consensus       259 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~  303 (369)
T 3zwl_B          259 DCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKI  303 (369)
T ss_dssp             SSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETT
T ss_pred             CCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecC
Confidence            67799999999999999999887544444333322  45566543

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.97  E-value=1.9e-29  Score=226.84  Aligned_cols=234  Identities=17%  Similarity=0.108  Sum_probs=193.6

Q ss_pred             CceeeEEEeccceeeeeecccceeeEEeec-----CCCCceEEEEcCC----CCEEEEEeCCCcEEEEe-CCCCeEEeec
Q 046394           14 GVEKTWRIKQEAIAREVDILSSRNQYDIML-----PELGPYTLDFTSS----GRYMAAAGCKGYPYFYN-RDGTELHCSK   83 (378)
Q Consensus        14 ~~~~~~~~~~~~~i~~~d~~~~~~~~~l~~-----~~~~v~~~~~sp~----g~~l~~~~~dg~i~iwd-~~~~~~~~~~   83 (378)
                      +....+....++.|++||+.++..+..+..     |...|++++|+|+    |.+|++|+.||.|++|| .++..+..+.
T Consensus        33 ~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~  112 (366)
T 3k26_A           33 GDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYV  112 (366)
T ss_dssp             TSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEE
T ss_pred             CCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeec
Confidence            344466666678999999998887766664     5577999999999    67999999999999999 5677888899


Q ss_pred             cCCCe-eEEEE------EEEEEeCCCeEEEEEcCCCcEEEEE---ecCCCCeeEEEEcCCCCEEEEEcCCCe--------
Q 046394           84 EHGEV-LKLQF------LLASINKLGQLRYQNVTMGEIVGNF---WTGLGRTDVIRVNPFNGVVSLGHSGGT--------  145 (378)
Q Consensus        84 ~~~~~-~~l~~------~l~s~~~d~~i~iwd~~~~~~~~~~---~~~~~~v~~~~~s~~~~~l~~~~~d~~--------  145 (378)
                      +|... .+++|      +|++++.|+.|++||+.+++.+..+   ..|...|.+++|+|++.+|++++.|+.        
T Consensus       113 ~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~  192 (366)
T 3k26_A          113 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINS  192 (366)
T ss_dssp             SCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCS
T ss_pred             CCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCC
Confidence            88876 99999      8999999999999999999998888   678899999999999999999999987        


Q ss_pred             ------eee----------------------------cCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCcee-------
Q 046394          146 ------MLC----------------------------HQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEV-------  184 (378)
Q Consensus       146 ------~~~----------------------------h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~-------  184 (378)
                            +..                            |...|.+++|+  +++|++++.|+.|++||+.++..       
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~  270 (366)
T 3k26_A          193 KRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKP  270 (366)
T ss_dssp             HHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCT
T ss_pred             CccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCcccccccccc
Confidence                  111                            89999999999  77999999999999999987643       


Q ss_pred             -------eeee---cCCceEEEEecC--CCc----------cccCCCCCc----eEEEeeccC--CcceeeeEEcCCCCe
Q 046394          185 -------LQTL---PGHAKTLDFSRK--DSG----------DFSGSHNYN----RYMGYSMVK--GYQIGKVSFRPYEDV  236 (378)
Q Consensus       185 -------~~~~---~~~i~~~~~sp~--g~~----------~~~~~~~~~----~~~~~~~~~--~~~v~~~~~sp~g~~  236 (378)
                             +..+   ...+++++|+|+  |.+          .+|+.....    ....+.. |  ...|++++|+|++.+
T Consensus       271 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~  349 (366)
T 3k26_A          271 SESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTH-HKCGAAIRQTSFSRDSSI  349 (366)
T ss_dssp             TCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECC-TTCCSCEEEEEECTTSSE
T ss_pred             CCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcc-cccCCceEEEEeCCCCCe
Confidence                   4555   367899999998  664          566665543    2334555 4  688999999999998


Q ss_pred             EEEecCCCeEEEEE
Q 046394          237 LGIGHSMGVSGILI  250 (378)
Q Consensus       237 l~~~~~~g~~~~~~  250 (378)
                      |++++.||.+.+|.
T Consensus       350 l~s~~~dg~i~iwd  363 (366)
T 3k26_A          350 LIAVCDDASIWRWD  363 (366)
T ss_dssp             EEEEETTSEEEEEE
T ss_pred             EEEEeCCCEEEEEE
Confidence            88888888665553

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.97  E-value=3.2e-29  Score=229.85  Aligned_cols=232  Identities=11%  Similarity=0.137  Sum_probs=198.4

Q ss_pred             ceeeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeC-CCCeEEeeccCCC------
Q 046394           15 VEKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNR-DGTELHCSKEHGE------   87 (378)
Q Consensus        15 ~~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~------   87 (378)
                      ....+....++.|++|| .++..+..+..|...|.+++|+|++++|++++.||.|++||. ++..+..+..+..      
T Consensus       120 ~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  198 (425)
T 1r5m_A          120 GNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSIN  198 (425)
T ss_dssp             SSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC--------
T ss_pred             CCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCcccee
Confidence            34456667789999999 678888899999999999999999999999999999999995 5666677666553      


Q ss_pred             ----------eeEEEE----EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe--------
Q 046394           88 ----------VLKLQF----LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT--------  145 (378)
Q Consensus        88 ----------~~~l~~----~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~--------  145 (378)
                                +.++.|    .+++++.|+.|++||+.+++.+..+..|...+.+++|+|++.+|++++.++.        
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~  278 (425)
T 1r5m_A          199 AENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGN  278 (425)
T ss_dssp             -------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSS
T ss_pred             eccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCC
Confidence                      566777    8999999999999999999998899899999999999999999999999887        


Q ss_pred             ------eeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee---cCCceEEEEecCCCc----------ccc
Q 046394          146 ------MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL---PGHAKTLDFSRKDSG----------DFS  206 (378)
Q Consensus       146 ------~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~~sp~g~~----------~~~  206 (378)
                            +..|...|.+++|+|++ ++++++.|+.|++||+.+++++..+   ...+.+++|+|+|.+          .+|
T Consensus       279 ~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~  357 (425)
T 1r5m_A          279 GNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVY  357 (425)
T ss_dssp             BSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             CccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEE
Confidence                  55689999999999999 9999999999999999999998887   468999999998874          566


Q ss_pred             CCCCCc--------------------eEEEeeccCCc--ceeeeEEcCCCCeEEEecCCCeEEEE
Q 046394          207 GSHNYN--------------------RYMGYSMVKGY--QIGKVSFRPYEDVLGIGHSMGVSGIL  249 (378)
Q Consensus       207 ~~~~~~--------------------~~~~~~~~~~~--~v~~~~~sp~g~~l~~~~~~g~~~~~  249 (378)
                      +.....                    ++..+.. |..  .|++++|+|++.+|++++.||.+.+|
T Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw  421 (425)
T 1r5m_A          358 DLKKLNSKSRSLYGNRDGILNPLPIPLYASYQS-SQDNDYIFDLSWNCAGNKISVAYSLQEGSVV  421 (425)
T ss_dssp             ECHHHHC--------------CEECCEEEEECC-TTCCCCEEEEEECTTSSEEEEEESSSCCEEE
T ss_pred             ECCCCccceeeeecccccccCcccchhhhhhcC-cccCCceEEEEccCCCceEEEEecCceEEEE
Confidence            665555                    6777777 644  89999999999888888877755554

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.97  E-value=2.5e-28  Score=220.23  Aligned_cols=233  Identities=11%  Similarity=0.025  Sum_probs=186.4

Q ss_pred             eeeEEEeccceeeeeecccce--eeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCCCe-E--EeeccCCCe-e
Q 046394           16 EKTWRIKQEAIAREVDILSSR--NQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTE-L--HCSKEHGEV-L   89 (378)
Q Consensus        16 ~~~~~~~~~~~i~~~d~~~~~--~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~-~--~~~~~~~~~-~   89 (378)
                      ...+....++.|++||+.+++  .+..+.+|...|.+++|+|++++|++++.||.|++||..... .  ..+..|... .
T Consensus        21 ~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~  100 (372)
T 1k8k_C           21 TQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAAR  100 (372)
T ss_dssp             SEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEE
T ss_pred             CEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCcee
Confidence            344555578999999999987  888999999999999999999999999999999999954433 2  334566655 9


Q ss_pred             EEEE-----EEEEEeCCCeEEEEEcCCCcE---EEEE-ecCCCCeeEEEEcCCCCEEEEEcCCCe---------------
Q 046394           90 KLQF-----LLASINKLGQLRYQNVTMGEI---VGNF-WTGLGRTDVIRVNPFNGVVSLGHSGGT---------------  145 (378)
Q Consensus        90 ~l~~-----~l~s~~~d~~i~iwd~~~~~~---~~~~-~~~~~~v~~~~~s~~~~~l~~~~~d~~---------------  145 (378)
                      +++|     +|++++.|+.|++||+..+..   ...+ ..|...|.+++|+|++.+|++++.++.               
T Consensus       101 ~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~  180 (372)
T 1k8k_C          101 CVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERP  180 (372)
T ss_dssp             EEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCC
T ss_pred             EEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccc
Confidence            9999     999999999999999998762   3333 457889999999999999999998876               


Q ss_pred             -----------------eeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee--c-CCceEEEEecCCCc--
Q 046394          146 -----------------MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL--P-GHAKTLDFSRKDSG--  203 (378)
Q Consensus       146 -----------------~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~--~-~~i~~~~~sp~g~~--  203 (378)
                                       +.+|...|.+++|+|++++|++++.|+.|++||+++++++..+  + ..+.+++|+|+|.+  
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  260 (372)
T 1k8k_C          181 APTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVA  260 (372)
T ss_dssp             CCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEE
T ss_pred             cccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEE
Confidence                             2257788999999999999999999999999999999998888  3 68999999998875  


Q ss_pred             -------cccCCCC--Cc--------------------------------eE------EEe-eccCCcceeeeEEc-CCC
Q 046394          204 -------DFSGSHN--YN--------------------------------RY------MGY-SMVKGYQIGKVSFR-PYE  234 (378)
Q Consensus       204 -------~~~~~~~--~~--------------------------------~~------~~~-~~~~~~~v~~~~~s-p~g  234 (378)
                             .+|+...  +.                                ..      ... .+ |..+|++++|+ ++|
T Consensus       261 ~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~g  339 (372)
T 1k8k_C          261 AGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSL-HKNSVSQISVLSGGK  339 (372)
T ss_dssp             EETTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSS-SSSCEEEEEEEESTT
T ss_pred             EEeCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCcccccccccc-ccCCcceeEEecCCC
Confidence                   3444333  10                                00      112 24 88899999976 666


Q ss_pred             ---CeEEEecCCCeEEEE
Q 046394          235 ---DVLGIGHSMGVSGIL  249 (378)
Q Consensus       235 ---~~l~~~~~~g~~~~~  249 (378)
                         .+|++|+.||.+.+|
T Consensus       340 ~~~~~l~s~~~Dg~i~~W  357 (372)
T 1k8k_C          340 AKCSQFCTTGMDGGMSIW  357 (372)
T ss_dssp             TSCSEEEEEETTSEEEEE
T ss_pred             cceeeEEEecCCCceEEE
Confidence               788877777755444

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.97  E-value=7.9e-29  Score=220.26  Aligned_cols=228  Identities=13%  Similarity=0.115  Sum_probs=187.0

Q ss_pred             cceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCC-C---eEEeec--cCCCe-eEEEE---
Q 046394           24 EAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDG-T---ELHCSK--EHGEV-LKLQF---   93 (378)
Q Consensus        24 ~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~-~---~~~~~~--~~~~~-~~l~~---   93 (378)
                      ++.+..|+............|...|.+++|+|++++|++++ ||.|++||... .   .+..+.  .|... .+++|   
T Consensus        30 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  108 (337)
T 1gxr_A           30 PDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPD  108 (337)
T ss_dssp             TTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTT
T ss_pred             CCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCC
Confidence            33445555555555566668999999999999999999998 99999999533 2   233333  56665 99999   


Q ss_pred             --EEEEEeCCCeEEEEEcCCCc--EEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe--------------eeecCCCEEE
Q 046394           94 --LLASINKLGQLRYQNVTMGE--IVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT--------------MLCHQGPVSA  155 (378)
Q Consensus        94 --~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~--------------~~~h~~~v~~  155 (378)
                        ++++++.|+.|++||+.+++  ....+..+...+.+++|+|++.+|++++.++.              +..|...|.+
T Consensus       109 ~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~  188 (337)
T 1gxr_A          109 GCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASC  188 (337)
T ss_dssp             SSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEE
T ss_pred             CCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEE
Confidence              89999999999999999887  66777888899999999999999999999887              5678999999


Q ss_pred             EEEecCCCEEEEEECCCeEEEEEcCCceeeeee--cCCceEEEEecCCCc----------cccCCCCCceEEEeeccCCc
Q 046394          156 LAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL--PGHAKTLDFSRKDSG----------DFSGSHNYNRYMGYSMVKGY  223 (378)
Q Consensus       156 ~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~--~~~i~~~~~sp~g~~----------~~~~~~~~~~~~~~~~~~~~  223 (378)
                      ++|+|++++|++++.|+.|++||+++++.+..+  ...+.+++|+|+|.+          .+|+....... .... |..
T Consensus       189 ~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~-~~~~-~~~  266 (337)
T 1gxr_A          189 IDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHL-HES  266 (337)
T ss_dssp             EEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECC-CSS
T ss_pred             EEECCCCCEEEEEecCCcEEEEECCCCceEeeecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE-EEcC-Ccc
Confidence            999999999999999999999999999988887  578999999998875          45555554443 3444 788


Q ss_pred             ceeeeEEcCCCCeEEEecCCCeEEEEEcCCC
Q 046394          224 QIGKVSFRPYEDVLGIGHSMGVSGILIPGSG  254 (378)
Q Consensus       224 ~v~~~~~sp~g~~l~~~~~~g~~~~~~~~s~  254 (378)
                      +|.++.|+|++.+|++++.+|.+.+|....+
T Consensus       267 ~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~  297 (337)
T 1gxr_A          267 CVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG  297 (337)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred             ceeEEEECCCCCEEEEecCCCcEEEEECCCC
Confidence            8999999999999999999998877765443

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.97  E-value=3.3e-30  Score=227.89  Aligned_cols=211  Identities=14%  Similarity=0.070  Sum_probs=168.1

Q ss_pred             EeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCC-CC--eEEeeccCCCe-eEEEE-------EEEEEeCCCeEEEEE
Q 046394           40 DIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRD-GT--ELHCSKEHGEV-LKLQF-------LLASINKLGQLRYQN  108 (378)
Q Consensus        40 ~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~-~~--~~~~~~~~~~~-~~l~~-------~l~s~~~d~~i~iwd  108 (378)
                      .+.+|...|++++|+|+|++||+|+.|++|+|||.. +.  .+..+.+|.+. .+++|       +|++|+.|++|++||
T Consensus         8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd   87 (316)
T 3bg1_A            8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR   87 (316)
T ss_dssp             ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred             ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence            456899999999999999999999999999999954 32  45778999876 99998       799999999999999


Q ss_pred             cCCC--cEEEEEecCCCCeeEEEEcCC--CCEEEEEcCCCe-----------------eeecCCCEEEEEEecC------
Q 046394          109 VTMG--EIVGNFWTGLGRTDVIRVNPF--NGVVSLGHSGGT-----------------MLCHQGPVSALAFHPN------  161 (378)
Q Consensus       109 ~~~~--~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~d~~-----------------~~~h~~~v~~~~~sp~------  161 (378)
                      +.++  ..+..+..|...|.+++|+|+  +.+|++++.|+.                 +.+|...|.+++|+|+      
T Consensus        88 ~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~  167 (316)
T 3bg1_A           88 EENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSL  167 (316)
T ss_dssp             CSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC---
T ss_pred             CCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccc
Confidence            9887  466778889999999999998  789999999986                 2357788999999997      


Q ss_pred             -----------CCEEEEEECCCeEEEEEcCCc---eeeeee--c-CCceEEEEecCC----C----------ccccCCCC
Q 046394          162 -----------GHLMATSGKDCKIKIWDLRKY---EVLQTL--P-GHAKTLDFSRKD----S----------GDFSGSHN  210 (378)
Q Consensus       162 -----------g~~l~t~~~d~~i~iwd~~~~---~~~~~~--~-~~i~~~~~sp~g----~----------~~~~~~~~  210 (378)
                                 +.+|++++.|++|+|||++..   .++..+  | ..|.+++|+|++    .          ..+|+...
T Consensus       168 ~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~  247 (316)
T 3bg1_A          168 IDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDD  247 (316)
T ss_dssp             ---CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSS
T ss_pred             cccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccC
Confidence                       478999999999999999764   455566  3 679999999986    2          25665543


Q ss_pred             C---c-eEEEeeccCCcceeeeEEcCCCCeEEEecCCCeEEEEEc
Q 046394          211 Y---N-RYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILIP  251 (378)
Q Consensus       211 ~---~-~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~~  251 (378)
                      .   . ....+.. |...|++++|+|+|.+||+++.||.+.+|-.
T Consensus       248 ~~~~~~~~~~~~~-~~~~v~~v~~sp~g~~las~~~D~~v~lw~~  291 (316)
T 3bg1_A          248 ASSNTWSPKLLHK-FNDVVWHVSWSITANILAVSGGDNKVTLWKE  291 (316)
T ss_dssp             TTCCCCBCCEEEE-CSSCEEEEEECTTTCCEEEEESSSCEEEEEE
T ss_pred             ccccchhhhhhhc-CCCcEEEEEEcCCCCEEEEEcCCCeEEEEEE
Confidence            1   1 1122334 6778999999999999998888887776653

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.97  E-value=4.4e-29  Score=243.92  Aligned_cols=205  Identities=16%  Similarity=0.120  Sum_probs=178.6

Q ss_pred             eEEeecCCCCceEEEEcCCC-CEEEEEeCCCcEEEEeCC------CCeEEeeccCCCe-eEEEE-----EEEEEeCCCeE
Q 046394           38 QYDIMLPELGPYTLDFTSSG-RYMAAAGCKGYPYFYNRD------GTELHCSKEHGEV-LKLQF-----LLASINKLGQL  104 (378)
Q Consensus        38 ~~~l~~~~~~v~~~~~sp~g-~~l~~~~~dg~i~iwd~~------~~~~~~~~~~~~~-~~l~~-----~l~s~~~d~~i  104 (378)
                      ...+.+|...|++++|+|++ ++|++|+.||+|++||..      +.....+.+|... .+++|     +|++|+.|++|
T Consensus       375 ~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v  454 (694)
T 3dm0_A          375 KGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGEL  454 (694)
T ss_dssp             EEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             hhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcE
Confidence            45688999999999999875 799999999999999953      2345678899876 99999     99999999999


Q ss_pred             EEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe-----------------eeecCCCEEEEEEecCC--CEE
Q 046394          105 RYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT-----------------MLCHQGPVSALAFHPNG--HLM  165 (378)
Q Consensus       105 ~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~-----------------~~~h~~~v~~~~~sp~g--~~l  165 (378)
                      ++||+.++..+..+..|...|.+++|+|++.+|++++.|+.                 ..+|...|.+++|+|++  ..|
T Consensus       455 ~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l  534 (694)
T 3dm0_A          455 RLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTI  534 (694)
T ss_dssp             EEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEE
T ss_pred             EEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceE
Confidence            99999999999999999999999999999999999999987                 13588899999999986  689


Q ss_pred             EEEECCCeEEEEEcCCceeeeee--c-CCceEEEEecCCCc----------cccCCCCCceEEEeeccCCcceeeeEEcC
Q 046394          166 ATSGKDCKIKIWDLRKYEVLQTL--P-GHAKTLDFSRKDSG----------DFSGSHNYNRYMGYSMVKGYQIGKVSFRP  232 (378)
Q Consensus       166 ~t~~~d~~i~iwd~~~~~~~~~~--~-~~i~~~~~sp~g~~----------~~~~~~~~~~~~~~~~~~~~~v~~~~~sp  232 (378)
                      ++++.|++|+|||++++++...+  | ..|++++|+|+|.+          .+|+......+..+..  ...|.+++|+|
T Consensus       535 ~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~--~~~v~~~~~sp  612 (694)
T 3dm0_A          535 VSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEA--NSVIHALCFSP  612 (694)
T ss_dssp             EEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBC--SSCEEEEEECS
T ss_pred             EEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecC--CCcEEEEEEcC
Confidence            99999999999999999988888  3 68999999998875          6777777777666543  56799999999


Q ss_pred             CCCeEEEecCCC
Q 046394          233 YEDVLGIGHSMG  244 (378)
Q Consensus       233 ~g~~l~~~~~~g  244 (378)
                      ++.+|+++++++
T Consensus       613 ~~~~l~~~~~~~  624 (694)
T 3dm0_A          613 NRYWLCAATEHG  624 (694)
T ss_dssp             SSSEEEEEETTE
T ss_pred             CCcEEEEEcCCC
Confidence            999888876654

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.97  E-value=7.8e-29  Score=220.44  Aligned_cols=215  Identities=14%  Similarity=0.080  Sum_probs=167.2

Q ss_pred             cceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCC---CeEEee-cc-CCCe-eEEEE-----EEEEEeCCC
Q 046394           34 SSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDG---TELHCS-KE-HGEV-LKLQF-----LLASINKLG  102 (378)
Q Consensus        34 ~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~---~~~~~~-~~-~~~~-~~l~~-----~l~s~~~d~  102 (378)
                      +.+.+..+.+|...|++++|+|+  +||+|+.|+.|++||...   ..+..+ .+ |... .+++|     +|++++.|+
T Consensus         3 ~~~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~   80 (330)
T 2hes_X            3 SINLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDS   80 (330)
T ss_dssp             CCEEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTS
T ss_pred             ccccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCC
Confidence            34567789999999999999987  999999999999999654   334455 34 7765 99999     999999999


Q ss_pred             eEEEEEcCC-------CcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe------------------eeecCCCEEEEE
Q 046394          103 QLRYQNVTM-------GEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT------------------MLCHQGPVSALA  157 (378)
Q Consensus       103 ~i~iwd~~~-------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~------------------~~~h~~~v~~~~  157 (378)
                      +|++||+..       .+.+..+.+|...|.+++|+|++.+|++++.|+.                  +.+|...|.+++
T Consensus        81 ~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~  160 (330)
T 2hes_X           81 TVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVI  160 (330)
T ss_dssp             CEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEE
T ss_pred             cEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEE
Confidence            999999853       3567788899999999999999999999999887                  346889999999


Q ss_pred             EecCCCEEEEEECCCeEEEEEcCCc--eeeeee--c-CCceEEEEecC--CCc----------cccCCCCC--------c
Q 046394          158 FHPNGHLMATSGKDCKIKIWDLRKY--EVLQTL--P-GHAKTLDFSRK--DSG----------DFSGSHNY--------N  212 (378)
Q Consensus       158 ~sp~g~~l~t~~~d~~i~iwd~~~~--~~~~~~--~-~~i~~~~~sp~--g~~----------~~~~~~~~--------~  212 (378)
                      |+|++.+|++++.|++|+|||+.++  .++..+  | ..|.+++|+|+  +.+          .+|+....        .
T Consensus       161 ~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~  240 (330)
T 2hes_X          161 WHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWV  240 (330)
T ss_dssp             ECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEE
T ss_pred             ECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeE
Confidence            9999999999999999999999876  566777  3 68999999998  432          44543221        1


Q ss_pred             eEEEeeccCCcceeeeEEcCCCCeEEEecCCCeEEEEEc
Q 046394          213 RYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILIP  251 (378)
Q Consensus       213 ~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~~  251 (378)
                      ....+...|...|++++|++++ +|++++.||.+.+|..
T Consensus       241 ~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~  278 (330)
T 2hes_X          241 CEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEE  278 (330)
T ss_dssp             EEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEE
T ss_pred             EeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEc
Confidence            2222222377889999999765 7777777777666653

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.97  E-value=3.2e-29  Score=235.21  Aligned_cols=185  Identities=12%  Similarity=-0.004  Sum_probs=152.6

Q ss_pred             EEEeccceeeeeecccceee----EEeecCCCCceEEEEcCC------CCEEEEEeCCCcEEEEeCCCC-----------
Q 046394           19 WRIKQEAIAREVDILSSRNQ----YDIMLPELGPYTLDFTSS------GRYMAAAGCKGYPYFYNRDGT-----------   77 (378)
Q Consensus        19 ~~~~~~~~i~~~d~~~~~~~----~~l~~~~~~v~~~~~sp~------g~~l~~~~~dg~i~iwd~~~~-----------   77 (378)
                      ...+.|+.|++||+.+++..    ..+..|.+.|.+++|+|+      +.+||+|+.||+|+|||+...           
T Consensus       177 aS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~  256 (524)
T 2j04_B          177 DKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCE  256 (524)
T ss_dssp             -----CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCC
T ss_pred             ccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeec
Confidence            44567899999999887643    446778889999999997      579999999999999996432           


Q ss_pred             -eEEeeccCCCe-eEEEE----EEEEEeCCCeEEEEEcCCCc-EEEEEecCCCCeeEE--EEcCCC-CEEEEEcCCCe--
Q 046394           78 -ELHCSKEHGEV-LKLQF----LLASINKLGQLRYQNVTMGE-IVGNFWTGLGRTDVI--RVNPFN-GVVSLGHSGGT--  145 (378)
Q Consensus        78 -~~~~~~~~~~~-~~l~~----~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~v~~~--~~s~~~-~~l~~~~~d~~--  145 (378)
                       +...+.+|... ++++|    .|++|+.||+|++||+.++. +...+..|...|.++  +|+|++ .+|++++.|+.  
T Consensus       257 ~p~~~l~~h~~~v~sv~~s~~~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvk  336 (524)
T 2j04_B          257 KPSLTLSLADSLITTFDFLSPTTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFY  336 (524)
T ss_dssp             SCSEEECCTTTCEEEEEESSSSEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEE
T ss_pred             CceEEEEcCCCCEEEEEecCCCeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEE
Confidence             12467778775 99999    99999999999999998764 456688899999999  678888 89999999998  


Q ss_pred             ------------eeecCC--CEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee--c-CCceEEEEecCCCc
Q 046394          146 ------------MLCHQG--PVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL--P-GHAKTLDFSRKDSG  203 (378)
Q Consensus       146 ------------~~~h~~--~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~--~-~~i~~~~~sp~g~~  203 (378)
                                  +.+|..  .|.+++|+|++..|++++.|++|+|||++++.++.++  | ..|++++|||+|.+
T Consensus       337 lWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~  411 (524)
T 2j04_B          337 IFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPM  411 (524)
T ss_dssp             EECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCB
T ss_pred             EEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCe
Confidence                        345653  5889999999999999999999999999999887777  3 78999999998874

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.97  E-value=4.4e-30  Score=232.52  Aligned_cols=187  Identities=11%  Similarity=0.072  Sum_probs=156.6

Q ss_pred             eeEEEeccceeeeeecccc--eeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCC-C---eEEeeccCCCe-e
Q 046394           17 KTWRIKQEAIAREVDILSS--RNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDG-T---ELHCSKEHGEV-L   89 (378)
Q Consensus        17 ~~~~~~~~~~i~~~d~~~~--~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~-~---~~~~~~~~~~~-~   89 (378)
                      ..+....++.|++||+.++  +....+.+|...|.+++|+|++++|++|+.||.|++||... .   ....+..|... .
T Consensus        25 ~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~  104 (377)
T 3dwl_C           25 EFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAAT  104 (377)
T ss_dssp             EEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEE
T ss_pred             EEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceE
Confidence            3444457899999999988  78888999999999999999999999999999999999544 3   46677788775 9


Q ss_pred             EEEE-----EEEEEeCCCeEEEEEcCCCc---EEEEEec-CCCCeeEEEEcCCCCEEEEEcCCCe-----ee--------
Q 046394           90 KLQF-----LLASINKLGQLRYQNVTMGE---IVGNFWT-GLGRTDVIRVNPFNGVVSLGHSGGT-----ML--------  147 (378)
Q Consensus        90 ~l~~-----~l~s~~~d~~i~iwd~~~~~---~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~d~~-----~~--------  147 (378)
                      +++|     +|++++.|+.|++||+.+++   ....+.. |...|.+++|+|++.+|++++.|+.     +.        
T Consensus       105 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~  184 (377)
T 3dwl_C          105 FVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKP  184 (377)
T ss_dssp             EEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CC
T ss_pred             EEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCc
Confidence            9999     89999999999999999877   3677777 8999999999999999999999986     11        


Q ss_pred             ------------------ecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCcee----eeee---cCCceEEEEecCCC
Q 046394          148 ------------------CHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEV----LQTL---PGHAKTLDFSRKDS  202 (378)
Q Consensus       148 ------------------~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~----~~~~---~~~i~~~~~sp~g~  202 (378)
                                        +|...|.+++|+|+|++|++++.|+.|++||+.++..    +..+   ...+.+++|+|+|.
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  264 (377)
T 3dwl_C          185 EASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESA  264 (377)
T ss_dssp             CSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTE
T ss_pred             cccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCC
Confidence                              6888999999999999999999999999999999877    5666   36799999999987


Q ss_pred             c
Q 046394          203 G  203 (378)
Q Consensus       203 ~  203 (378)
                      +
T Consensus       265 ~  265 (377)
T 3dwl_C          265 I  265 (377)
T ss_dssp             E
T ss_pred             E
Confidence            5

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.97  E-value=1.3e-28  Score=224.71  Aligned_cols=238  Identities=10%  Similarity=0.050  Sum_probs=195.8

Q ss_pred             ceeeEEEeccceeeeeecccceeeEEee-------------cCCCCceEEEEcC-CCCEEEEEeCCCcEEEEeCC-CCeE
Q 046394           15 VEKTWRIKQEAIAREVDILSSRNQYDIM-------------LPELGPYTLDFTS-SGRYMAAAGCKGYPYFYNRD-GTEL   79 (378)
Q Consensus        15 ~~~~~~~~~~~~i~~~d~~~~~~~~~l~-------------~~~~~v~~~~~sp-~g~~l~~~~~dg~i~iwd~~-~~~~   79 (378)
                      ....+....++.|++||+.++.....+.             +|...|.+++|+| ++.+|++++.||.|++||.. +..+
T Consensus        56 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~  135 (408)
T 4a11_B           56 GRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTA  135 (408)
T ss_dssp             CCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEE
T ss_pred             CCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccc
Confidence            4456667779999999999887665554             5889999999999 77899999999999999954 5555


Q ss_pred             EeeccCCCeeEEEE--------EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCC-EEEEEcCCCe-----
Q 046394           80 HCSKEHGEVLKLQF--------LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNG-VVSLGHSGGT-----  145 (378)
Q Consensus        80 ~~~~~~~~~~~l~~--------~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~d~~-----  145 (378)
                      ..+.....+.++.|        ++++++.|+.|++||+.+++.+..+..|...|.+++|+|++. +|++++.|+.     
T Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d  215 (408)
T 4a11_B          136 DVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWD  215 (408)
T ss_dssp             EEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEE
T ss_pred             eeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEE
Confidence            55654444577777        799999999999999999999999999999999999999998 6889999887     


Q ss_pred             ----------e---------------eecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee--c---------
Q 046394          146 ----------M---------------LCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL--P---------  189 (378)
Q Consensus       146 ----------~---------------~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~--~---------  189 (378)
                                +               ..|...|.+++|+|++++|++++.|+.|++||+.+++....+  +         
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~  295 (408)
T 4a11_B          216 VRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGL  295 (408)
T ss_dssp             TTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCC
T ss_pred             CCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccc
Confidence                      1               468899999999999999999999999999999987765433  0         


Q ss_pred             -------CCceEEEEecCCCccccCCCCCceEEEeeccCCcceeeeEEcCCCCeEEEecCCCeEEEEEcCC
Q 046394          190 -------GHAKTLDFSRKDSGDFSGSHNYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILIPGS  253 (378)
Q Consensus       190 -------~~i~~~~~sp~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~~~s  253 (378)
                             ....-+..+.++...+|+.....++..+.+ |...|++++|+|++.+|++|+.||.+.+|....
T Consensus       296 ~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~  365 (408)
T 4a11_B          296 KFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKG-HYKTVDCCVFQSNFQELYSGSRDCNILAWVPSL  365 (408)
T ss_dssp             CCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECC-CSSCEEEEEEETTTTEEEEEETTSCEEEEEECC
T ss_pred             eeEEecCCCceEEEEecCCEEEEEECcCCcceeeecc-CCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCC
Confidence                   011222334466678999989999998888 889999999999999999888888777665443

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.97  E-value=7.1e-29  Score=226.04  Aligned_cols=232  Identities=14%  Similarity=0.129  Sum_probs=194.7

Q ss_pred             eeeEEEeccceeeeeecccce------eeEEeecCCCCceEEEEcCC----C---CEEEEEeCCCcEEEEeC-CCCe---
Q 046394           16 EKTWRIKQEAIAREVDILSSR------NQYDIMLPELGPYTLDFTSS----G---RYMAAAGCKGYPYFYNR-DGTE---   78 (378)
Q Consensus        16 ~~~~~~~~~~~i~~~d~~~~~------~~~~l~~~~~~v~~~~~sp~----g---~~l~~~~~dg~i~iwd~-~~~~---   78 (378)
                      ...+....++.|++||+.++.      ....+.+|...|.+++|+|+    |   .+|++++.||.|++||. .+..   
T Consensus        27 ~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~  106 (397)
T 1sq9_A           27 SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKK  106 (397)
T ss_dssp             SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCC
T ss_pred             CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCccccc
Confidence            566677789999999999988      78899999999999999999    9   99999999999999994 3444   


Q ss_pred             --EEeeccC------CCeeEEEE---------E-EEEEeCCCeEEEEEcCC------CcEEE-----EE-------ecCC
Q 046394           79 --LHCSKEH------GEVLKLQF---------L-LASINKLGQLRYQNVTM------GEIVG-----NF-------WTGL  122 (378)
Q Consensus        79 --~~~~~~~------~~~~~l~~---------~-l~s~~~d~~i~iwd~~~------~~~~~-----~~-------~~~~  122 (378)
                        +..+..|      ..+.+++|         + |++++.|+.|++||+.+      +..+.     .+       ..|.
T Consensus       107 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (397)
T 1sq9_A          107 VIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPS  186 (397)
T ss_dssp             EEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSC
T ss_pred             ccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCC
Confidence              7788888      33477766         4 99999999999999988      66555     66       3478


Q ss_pred             CCeeEEEEcCCCCEEEEEcCCCe--------------eee---c---CCCEEEEEEecCCCEEEEEECC---CeEEEEEc
Q 046394          123 GRTDVIRVNPFNGVVSLGHSGGT--------------MLC---H---QGPVSALAFHPNGHLMATSGKD---CKIKIWDL  179 (378)
Q Consensus       123 ~~v~~~~~s~~~~~l~~~~~d~~--------------~~~---h---~~~v~~~~~sp~g~~l~t~~~d---~~i~iwd~  179 (378)
                      ..+.+++|+|++ +|++++.++.              +..   |   ...|.+++|+|++++|++++.|   +.|++||+
T Consensus       187 ~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~  265 (397)
T 1sq9_A          187 QFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYET  265 (397)
T ss_dssp             CCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEET
T ss_pred             CCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEEC
Confidence            899999999999 9999999997              555   8   9999999999999999999999   99999999


Q ss_pred             CCceeeeee-c---------------CCceEEEEecCCCc----------cccCCCCCceEEEee------ccC------
Q 046394          180 RKYEVLQTL-P---------------GHAKTLDFSRKDSG----------DFSGSHNYNRYMGYS------MVK------  221 (378)
Q Consensus       180 ~~~~~~~~~-~---------------~~i~~~~~sp~g~~----------~~~~~~~~~~~~~~~------~~~------  221 (378)
                      ++++++..+ .               ..+.+++|+|++.+          .+|+.....++..+.      . |      
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~  344 (397)
T 1sq9_A          266 EFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIE-IEEDILA  344 (397)
T ss_dssp             TTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCS-SGGGCCC
T ss_pred             CCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCccc-chhhhhc
Confidence            999887776 2               46899999998874          678888888888887      6 6      


Q ss_pred             ---------CcceeeeEEcCCC----------CeEEEecCCCeEEEE
Q 046394          222 ---------GYQIGKVSFRPYE----------DVLGIGHSMGVSGIL  249 (378)
Q Consensus       222 ---------~~~v~~~~~sp~g----------~~l~~~~~~g~~~~~  249 (378)
                               ..+|++++|+|+|          .+|++++.||.+.+|
T Consensus       345 g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw  391 (397)
T 1sq9_A          345 VDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWF  391 (397)
T ss_dssp             BCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEE
T ss_pred             cccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEE
Confidence                     8899999999999          455555555554444

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.97  E-value=9e-29  Score=226.69  Aligned_cols=235  Identities=12%  Similarity=0.104  Sum_probs=189.9

Q ss_pred             eeEEEeccceeeeeeccc----ceeeEEeecCCCCceEEEEcCC-CCEEEEEeCCCcEEEEeCCC-C------eEE---e
Q 046394           17 KTWRIKQEAIAREVDILS----SRNQYDIMLPELGPYTLDFTSS-GRYMAAAGCKGYPYFYNRDG-T------ELH---C   81 (378)
Q Consensus        17 ~~~~~~~~~~i~~~d~~~----~~~~~~l~~~~~~v~~~~~sp~-g~~l~~~~~dg~i~iwd~~~-~------~~~---~   81 (378)
                      ..+....++.|++||+.+    ......+.+|...|.+++|+|+ +.+|++++.||.|++||... .      ...   .
T Consensus        81 ~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~  160 (416)
T 2pm9_A           81 IIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQ  160 (416)
T ss_dssp             CEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCC
T ss_pred             eEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccccccccccccc
Confidence            455566789999999988    4578888999999999999998 89999999999999999543 3      222   2


Q ss_pred             eccCCCe-eEEEE------EEEEEeCCCeEEEEEcCCCcEEEEEecC------CCCeeEEEEcCCC-CEEEEEcCCC---
Q 046394           82 SKEHGEV-LKLQF------LLASINKLGQLRYQNVTMGEIVGNFWTG------LGRTDVIRVNPFN-GVVSLGHSGG---  144 (378)
Q Consensus        82 ~~~~~~~-~~l~~------~l~s~~~d~~i~iwd~~~~~~~~~~~~~------~~~v~~~~~s~~~-~~l~~~~~d~---  144 (378)
                      +..|... .+++|      ++++++.|+.|++||+.+++.+..+..+      ...+.+++|+|++ .++++++.++   
T Consensus       161 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~  240 (416)
T 2pm9_A          161 SMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDP  240 (416)
T ss_dssp             SCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSC
T ss_pred             ccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCc
Confidence            3566665 99999      8999999999999999999999888876      7889999999998 6899999887   


Q ss_pred             e---------------ee-ecCCCEEEEEEec-CCCEEEEEECCCeEEEEEcCCceeeeee---cCCceEEEEecCC-Cc
Q 046394          145 T---------------ML-CHQGPVSALAFHP-NGHLMATSGKDCKIKIWDLRKYEVLQTL---PGHAKTLDFSRKD-SG  203 (378)
Q Consensus       145 ~---------------~~-~h~~~v~~~~~sp-~g~~l~t~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~~sp~g-~~  203 (378)
                      .               +. +|...|.+++|+| ++++|++++.|+.|++||+.+++++..+   ...+.+++|+|++ .+
T Consensus       241 ~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~  320 (416)
T 2pm9_A          241 SILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDL  320 (416)
T ss_dssp             CCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTE
T ss_pred             eEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCE
Confidence            4               45 7999999999999 9999999999999999999999998888   3789999999998 43


Q ss_pred             ----------cccCCCCCceEEEe-----------------------------------eccCCcceeeeEEcCCCCeEE
Q 046394          204 ----------DFSGSHNYNRYMGY-----------------------------------SMVKGYQIGKVSFRPYEDVLG  238 (378)
Q Consensus       204 ----------~~~~~~~~~~~~~~-----------------------------------~~~~~~~v~~~~~sp~g~~l~  238 (378)
                                .+|+..........                                   .. +..++++++|+|+|    
T Consensus       321 l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~dg----  395 (416)
T 2pm9_A          321 FACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTW-YGEPSPAAHWAFGG----  395 (416)
T ss_dssp             EEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCST-TCCCSCCCEEETTT----
T ss_pred             EEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCcc-ccCCccceEEeeCC----
Confidence                      34433222211000                                   00 45677899999999    


Q ss_pred             EecCCCeEEEEEcCCCCcccccccCC
Q 046394          239 IGHSMGVSGILIPGSGEPNFDSWVAN  264 (378)
Q Consensus       239 ~~~~~g~~~~~~~~s~d~~i~~w~~~  264 (378)
                              .++++++.|+.|++|++.
T Consensus       396 --------~~la~~~~d~~v~~w~~~  413 (416)
T 2pm9_A          396 --------KLVQITPDGKGVSITNPK  413 (416)
T ss_dssp             --------EEECBCTTSSCBCCBCCC
T ss_pred             --------eEEEEeCCCCeEEEEEec
Confidence                    556666677788999864

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.97  E-value=1e-28  Score=220.13  Aligned_cols=236  Identities=13%  Similarity=0.130  Sum_probs=178.9

Q ss_pred             ceeeEEEeccceeeeeecccc----eeeEEeecCCCCceEEEEcC--CCCEEEEEeCCCcEEEEeCCC----------Ce
Q 046394           15 VEKTWRIKQEAIAREVDILSS----RNQYDIMLPELGPYTLDFTS--SGRYMAAAGCKGYPYFYNRDG----------TE   78 (378)
Q Consensus        15 ~~~~~~~~~~~~i~~~d~~~~----~~~~~l~~~~~~v~~~~~sp--~g~~l~~~~~dg~i~iwd~~~----------~~   78 (378)
                      ....+....++.|++||+.++    +....+.+|...|.+++|+|  ++.+|++|+.||.|++||...          ..
T Consensus        23 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~  102 (351)
T 3f3f_A           23 GRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNK  102 (351)
T ss_dssp             SSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEE
T ss_pred             CCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcce
Confidence            345666777899999999877    45677789999999999999  699999999999999999543          44


Q ss_pred             EEeeccCCCe-eEEEE-------EEEEEeCCCeEEEEEcCCCcEEEEEe-------------cCCCCeeEEEEcCC---C
Q 046394           79 LHCSKEHGEV-LKLQF-------LLASINKLGQLRYQNVTMGEIVGNFW-------------TGLGRTDVIRVNPF---N  134 (378)
Q Consensus        79 ~~~~~~~~~~-~~l~~-------~l~s~~~d~~i~iwd~~~~~~~~~~~-------------~~~~~v~~~~~s~~---~  134 (378)
                      +..+..|... .+++|       ++++++.|+.|++||+.+++.+..+.             .+...+.+++|+|+   +
T Consensus       103 ~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  182 (351)
T 3f3f_A          103 LCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSP  182 (351)
T ss_dssp             EEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSC
T ss_pred             eeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCC
Confidence            6778888876 99999       79999999999999998876543322             46678999999997   8


Q ss_pred             CEEEEEcCCCe----------------eeecCCCEEEEEEecCC----CEEEEEECCCeEEEEEcCCceeeeee---cCC
Q 046394          135 GVVSLGHSGGT----------------MLCHQGPVSALAFHPNG----HLMATSGKDCKIKIWDLRKYEVLQTL---PGH  191 (378)
Q Consensus       135 ~~l~~~~~d~~----------------~~~h~~~v~~~~~sp~g----~~l~t~~~d~~i~iwd~~~~~~~~~~---~~~  191 (378)
                      ..+++++.++.                +.+|...|++++|+|++    ++|++++.||.|++||++++......   ...
T Consensus       183 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  262 (351)
T 3f3f_A          183 EKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTN  262 (351)
T ss_dssp             CEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC-----------
T ss_pred             cEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccc
Confidence            89999998877                45789999999999998    89999999999999999876544333   111


Q ss_pred             ceEEEEecCCC--------------ccccCCCCCceEEEeeccCCcceeeeEEcCCCCeEEEecCCCeEEEEEc
Q 046394          192 AKTLDFSRKDS--------------GDFSGSHNYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILIP  251 (378)
Q Consensus       192 i~~~~~sp~g~--------------~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~~  251 (378)
                      .....+++...              ..+|.......+..+.+ |...|++++|+|+|.+|++|+.||.+.+|..
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~  335 (351)
T 3f3f_A          263 SNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDD-HNGEVWSVSWNLTGTILSSAGDDGKVRLWKA  335 (351)
T ss_dssp             ----------------------------CCSEEEEEEEEECT-TSSCEEEEEECSSSCCEEEEETTSCEEEEEE
T ss_pred             eeccCCCcccccccccccccccceeeeecccccccEEEEEec-ccccEEEEEEcCCCCEEEEecCCCcEEEEec
Confidence            22222222211              24455555567777777 8889999999999988888888876666643

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=5.8e-29  Score=224.79  Aligned_cols=214  Identities=13%  Similarity=0.108  Sum_probs=176.7

Q ss_pred             eeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeC---CCCeEEeeccCCCe-eEEEE-------EEEEEeCCCeE
Q 046394           36 RNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNR---DGTELHCSKEHGEV-LKLQF-------LLASINKLGQL  104 (378)
Q Consensus        36 ~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~---~~~~~~~~~~~~~~-~~l~~-------~l~s~~~d~~i  104 (378)
                      +.+..+.+|...|++++|+|++++||+|+.||.|+|||.   ++..+..+.+|... ++++|       +|++++.|+.|
T Consensus         2 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v   81 (379)
T 3jrp_A            2 SMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV   81 (379)
T ss_dssp             ---CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred             CccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEE
Confidence            445678899999999999999999999999999999995   34556778889876 99999       89999999999


Q ss_pred             EEEEcCCCc--EEEEEecCCCCeeEEEEcCC--CCEEEEEcCCCe----------------eeecCCCEEEEEEec----
Q 046394          105 RYQNVTMGE--IVGNFWTGLGRTDVIRVNPF--NGVVSLGHSGGT----------------MLCHQGPVSALAFHP----  160 (378)
Q Consensus       105 ~iwd~~~~~--~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~d~~----------------~~~h~~~v~~~~~sp----  160 (378)
                      ++||+.+++  .+..+..|...|.+++|+|+  +.+|++++.|+.                +..|...|.+++|+|    
T Consensus        82 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  161 (379)
T 3jrp_A           82 LIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIE  161 (379)
T ss_dssp             EEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC--
T ss_pred             EEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcccc
Confidence            999999987  67778889999999999999  999999999987                557889999999999    


Q ss_pred             ---------CCCEEEEEECCCeEEEEEcCCce----eeeee---cCCceEEEEecC---CCc----------cccCCCCC
Q 046394          161 ---------NGHLMATSGKDCKIKIWDLRKYE----VLQTL---PGHAKTLDFSRK---DSG----------DFSGSHNY  211 (378)
Q Consensus       161 ---------~g~~l~t~~~d~~i~iwd~~~~~----~~~~~---~~~i~~~~~sp~---g~~----------~~~~~~~~  211 (378)
                               ++.+|++++.|+.|++||++++.    ++..+   ...+.+++|+|+   +.+          .+|+....
T Consensus       162 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~  241 (379)
T 3jrp_A          162 EDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNE  241 (379)
T ss_dssp             --------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESST
T ss_pred             ccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCC
Confidence                     69999999999999999998754    33444   367999999999   554          55554443


Q ss_pred             c-----eEEEeeccCCcceeeeEEcCCCCeEEEecCCCeEEEEE
Q 046394          212 N-----RYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILI  250 (378)
Q Consensus       212 ~-----~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~  250 (378)
                      .     .+..... |...|++++|+|+|.+|++++.||.+.+|.
T Consensus       242 ~~~~~~~~~~~~~-~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~  284 (379)
T 3jrp_A          242 QGPWKKTLLKEEK-FPDVLWRASWSLSGNVLALSGGDNKVTLWK  284 (379)
T ss_dssp             TSCCEEEESSSSC-CSSCEEEEEECSSSCCEEEEESSSSEEEEE
T ss_pred             Cccceeeeecccc-CCCcEEEEEEcCCCCEEEEecCCCcEEEEe
Confidence            2     1111122 667899999999999998888888776664

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.97  E-value=1.5e-28  Score=225.68  Aligned_cols=234  Identities=11%  Similarity=0.082  Sum_probs=187.1

Q ss_pred             ceeeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeeccCCCe-eEEE
Q 046394           15 VEKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKEHGEV-LKLQ   92 (378)
Q Consensus        15 ~~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~-~~l~   92 (378)
                      ....+....++.|++||+.++.....+.+|...|.+++|+|++++|++|+.||.|++|| .++..+..+.+|... .+++
T Consensus       109 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~  188 (420)
T 3vl1_A          109 MRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIA  188 (420)
T ss_dssp             SCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEE
T ss_pred             CCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEE
Confidence            44566677889999999999999888889999999999999999999999999999999 467778889999876 9999


Q ss_pred             E-----EEEEEeCCCeEEEEEcCCCcEEEEEecC---C---------------------CCeeEEEEcCCCCEEEEEcCC
Q 046394           93 F-----LLASINKLGQLRYQNVTMGEIVGNFWTG---L---------------------GRTDVIRVNPFNGVVSLGHSG  143 (378)
Q Consensus        93 ~-----~l~s~~~d~~i~iwd~~~~~~~~~~~~~---~---------------------~~v~~~~~s~~~~~l~~~~~d  143 (378)
                      |     +|++++.|++|++||+.+++.+..+..+   .                     ..+.+++|+|++.+|++++.+
T Consensus       189 ~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d  268 (420)
T 3vl1_A          189 IIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVS  268 (420)
T ss_dssp             EETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETT
T ss_pred             EcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCC
Confidence            9     8999999999999999999999888753   2                     444555668999999999999


Q ss_pred             Ce---------------eeecCCCEEEEEEecCCC-EEEEEECCCeEEEEEcCCcee-eeee---c-CCceEEEEecCCC
Q 046394          144 GT---------------MLCHQGPVSALAFHPNGH-LMATSGKDCKIKIWDLRKYEV-LQTL---P-GHAKTLDFSRKDS  202 (378)
Q Consensus       144 ~~---------------~~~h~~~v~~~~~sp~g~-~l~t~~~d~~i~iwd~~~~~~-~~~~---~-~~i~~~~~sp~g~  202 (378)
                      +.               ...|...|.+++|+|++. +|++++.||.|++||++++.. +..+   + ..++++.| |++.
T Consensus       269 g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~  347 (420)
T 3vl1_A          269 GVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGA  347 (420)
T ss_dssp             SCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTE
T ss_pred             CeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCC
Confidence            87               235788999999999998 999999999999999998754 5555   2 55677755 4544


Q ss_pred             c----------cccCCCCC---------ceEEEeeccCCcceeeeEEcCCCC---eEEEecCCCeEEEEE
Q 046394          203 G----------DFSGSHNY---------NRYMGYSMVKGYQIGKVSFRPYED---VLGIGHSMGVSGILI  250 (378)
Q Consensus       203 ~----------~~~~~~~~---------~~~~~~~~~~~~~v~~~~~sp~g~---~l~~~~~~g~~~~~~  250 (378)
                      +          .+|+....         ........ +...|.+++|+|++.   .|++++.+|.+.+|-
T Consensus       348 ~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~  416 (420)
T 3vl1_A          348 LFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVS-NDDAVSQFCYVSDDESNGEVLEVGKNNFCALYN  416 (420)
T ss_dssp             EEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECC-SSCCCCEEEEECCSSSSCEEEEEETTTEEEEEE
T ss_pred             EEEEecCCccEEEEeccCCCCCccceeccCccEEcc-CCcceEEEEEccCCCCcceEEEEcCCceEEEEe
Confidence            3          55554331         11112333 667899999999998   566666677666554

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.97  E-value=2.1e-28  Score=219.38  Aligned_cols=226  Identities=13%  Similarity=0.109  Sum_probs=184.5

Q ss_pred             cceeeeeecccceeeEEe-ecCCCCceEEEEcCC---CCEEEEEeCCCcEEEEeC-CCC-eEEeeccCCCe-eEEEE---
Q 046394           24 EAIAREVDILSSRNQYDI-MLPELGPYTLDFTSS---GRYMAAAGCKGYPYFYNR-DGT-ELHCSKEHGEV-LKLQF---   93 (378)
Q Consensus        24 ~~~i~~~d~~~~~~~~~l-~~~~~~v~~~~~sp~---g~~l~~~~~dg~i~iwd~-~~~-~~~~~~~~~~~-~~l~~---   93 (378)
                      ++.|++||+.+++..... ..|...|.+++|+|+   |.+|++|+.||.|++||. .+. .+..+.+|... .++.|   
T Consensus        43 d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~  122 (357)
T 3i2n_A           43 TGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGG  122 (357)
T ss_dssp             CEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESG
T ss_pred             CcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccc
Confidence            899999999988765443 368899999999998   699999999999999995 444 67888899876 88854   


Q ss_pred             --------EEEEEeCCCeEEEEEcCCCc-EEEEEecCCC----CeeEEE----EcCCCCEEEEEcCCCe-----------
Q 046394           94 --------LLASINKLGQLRYQNVTMGE-IVGNFWTGLG----RTDVIR----VNPFNGVVSLGHSGGT-----------  145 (378)
Q Consensus        94 --------~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~----~v~~~~----~s~~~~~l~~~~~d~~-----------  145 (378)
                              +|++++.|+.|++||+.++. .+..+..+.+    .+.+++    |+|++.+|++++.++.           
T Consensus       123 ~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~  202 (357)
T 3i2n_A          123 LGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMAL  202 (357)
T ss_dssp             GGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEE
T ss_pred             cccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCce
Confidence                    89999999999999999887 6777766544    788888    7899999999999987           


Q ss_pred             --eeecCCCEEEEEEec---CCCEEEEEECCCeEEEEEcCCceeeeee--------cCCceEEEEecCCC-c--------
Q 046394          146 --MLCHQGPVSALAFHP---NGHLMATSGKDCKIKIWDLRKYEVLQTL--------PGHAKTLDFSRKDS-G--------  203 (378)
Q Consensus       146 --~~~h~~~v~~~~~sp---~g~~l~t~~~d~~i~iwd~~~~~~~~~~--------~~~i~~~~~sp~g~-~--------  203 (378)
                        ...|...|.+++|+|   ++.+|++++.||.|++||++++.++..+        ...+++++|+|++. +        
T Consensus       203 ~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg  282 (357)
T 3i2n_A          203 RWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAG  282 (357)
T ss_dssp             EEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTS
T ss_pred             eeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCC
Confidence              556889999999999   9999999999999999999987664332        36899999999887 2        


Q ss_pred             --cccCCCCC-------------------ceEEEeeccCCcceeeeEEcCCCCeEE-EecCCCeEEEEE
Q 046394          204 --DFSGSHNY-------------------NRYMGYSMVKGYQIGKVSFRPYEDVLG-IGHSMGVSGILI  250 (378)
Q Consensus       204 --~~~~~~~~-------------------~~~~~~~~~~~~~v~~~~~sp~g~~l~-~~~~~g~~~~~~  250 (378)
                        .+|+....                   ..+..+.+ |..+|++++|+|+|.+|+ +++.||.+.+|.
T Consensus       283 ~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~  350 (357)
T 3i2n_A          283 GLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTL-STQPISSLDWSPDKRGLCVCSSFDQTVRVLI  350 (357)
T ss_dssp             EEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEEC-CSSCEEEEEECSSSTTEEEEEETTSEEEEEE
T ss_pred             cEEEeecCCCcccccccCCCCccccccccceeecccc-CCCCeeEEEEcCCCCeEEEEecCCCcEEEEE
Confidence              44544321                   34555666 888999999999998887 677777665554

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.97  E-value=2.1e-28  Score=253.88  Aligned_cols=234  Identities=15%  Similarity=0.137  Sum_probs=206.1

Q ss_pred             ceeeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeeccCCCe-eEEE
Q 046394           15 VEKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKEHGEV-LKLQ   92 (378)
Q Consensus        15 ~~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~-~~l~   92 (378)
                      ....+....++.|++||+.+++.+..+.+|...|.+++|+|+|++|++|+.||.|+||| .++..+..+.+|... .+++
T Consensus       627 ~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~  706 (1249)
T 3sfz_A          627 GQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCH  706 (1249)
T ss_dssp             SSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEE
T ss_pred             CCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEE
Confidence            34556667889999999999999999999999999999999999999999999999999 577888999999876 9999


Q ss_pred             E-------EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe--------------e-----
Q 046394           93 F-------LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT--------------M-----  146 (378)
Q Consensus        93 ~-------~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~--------------~-----  146 (378)
                      |       ++++++.|+.|++||+.+++++..+.+|.+.|.+++|+|++.++++++.|+.              +     
T Consensus       707 ~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~  786 (1249)
T 3sfz_A          707 FTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRF  786 (1249)
T ss_dssp             ECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCC
T ss_pred             EecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceeccccc
Confidence            9       7999999999999999999999999999999999999999999999999998              0     


Q ss_pred             --------eecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee----cCCceEEEEecCCCc----------c
Q 046394          147 --------LCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL----PGHAKTLDFSRKDSG----------D  204 (378)
Q Consensus       147 --------~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~----~~~i~~~~~sp~g~~----------~  204 (378)
                              ..+...+.+++|+|+|.++++++ ++.|.+||+.++..+..+    ...+.+++|+|++.+          .
T Consensus       787 ~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~  865 (1249)
T 3sfz_A          787 FLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVE  865 (1249)
T ss_dssp             C--------CCCCCBCCCCBCTTSSEEEEEE-TTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEE
T ss_pred             ccccCCccccccceEEEEEECCCCCEEEEEc-CCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEE
Confidence                    01123678899999999998887 688999999998887776    378899999998774          6


Q ss_pred             ccCCCCCceEEEeeccCCcceeeeEEcCCCCeEEEecCCCeEEEEE
Q 046394          205 FSGSHNYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILI  250 (378)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~  250 (378)
                      +|+..+...+..+.+ |...|++++|+|+|.+|++++.||.+.+|.
T Consensus       866 vwd~~~~~~~~~~~~-h~~~v~~v~~spdg~~l~s~s~dg~v~vw~  910 (1249)
T 3sfz_A          866 LWNIDSRLKVADCRG-HLSWVHGVMFSPDGSSFLTASDDQTIRVWE  910 (1249)
T ss_dssp             EEETTTTEEEEEECC-CSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             EEEcCCCceeeecCC-CccceEEEEECCCCCEEEEEeCCCeEEEEE
Confidence            677777777777777 888999999999999999999999877663

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.7e-28  Score=224.86  Aligned_cols=230  Identities=17%  Similarity=0.181  Sum_probs=191.5

Q ss_pred             eccceeeeeeccccee--eEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCC-----CeEEeeccCCCe-eEEEE
Q 046394           22 KQEAIAREVDILSSRN--QYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDG-----TELHCSKEHGEV-LKLQF   93 (378)
Q Consensus        22 ~~~~~i~~~d~~~~~~--~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~-----~~~~~~~~~~~~-~~l~~   93 (378)
                      ..++.|++||+.++..  ......|...|.+++|+|++.+|++|+.||.|++||...     ..+..+.+|... .+++|
T Consensus        42 ~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~  121 (416)
T 2pm9_A           42 STDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKF  121 (416)
T ss_dssp             CCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEE
T ss_pred             CCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEE
Confidence            5688999999998862  222335788999999999999999999999999999654     477888889876 99999


Q ss_pred             ------EEEEEeCCCeEEEEEcCCCc------EEEE---EecCCCCeeEEEEcCC-CCEEEEEcCCCe------------
Q 046394           94 ------LLASINKLGQLRYQNVTMGE------IVGN---FWTGLGRTDVIRVNPF-NGVVSLGHSGGT------------  145 (378)
Q Consensus        94 ------~l~s~~~d~~i~iwd~~~~~------~~~~---~~~~~~~v~~~~~s~~-~~~l~~~~~d~~------------  145 (378)
                            +|++++.|+.|++||+.++.      ....   +..|...+.+++|+|+ +.+|++++.++.            
T Consensus       122 ~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~  201 (416)
T 2pm9_A          122 NAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEV  201 (416)
T ss_dssp             CSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEE
T ss_pred             cCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcc
Confidence                  89999999999999999876      3322   3567889999999999 689999999987            


Q ss_pred             --eeec------CCCEEEEEEecCC-CEEEEEECCC---eEEEEEcCCc-eeeeee----cCCceEEEEec-CCCc----
Q 046394          146 --MLCH------QGPVSALAFHPNG-HLMATSGKDC---KIKIWDLRKY-EVLQTL----PGHAKTLDFSR-KDSG----  203 (378)
Q Consensus       146 --~~~h------~~~v~~~~~sp~g-~~l~t~~~d~---~i~iwd~~~~-~~~~~~----~~~i~~~~~sp-~g~~----  203 (378)
                        +..|      ...|.+++|+|++ .+|++++.|+   .|++||++++ .++..+    ...+.+++|+| ++.+    
T Consensus       202 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~  281 (416)
T 2pm9_A          202 IHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSS  281 (416)
T ss_dssp             EEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEE
T ss_pred             eEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEE
Confidence              2333      7889999999987 6899999998   9999999986 455544    36799999999 6654    


Q ss_pred             ------cccCCCCCceEEEeeccCCcceeeeEEcCCC-CeEEEecCCCeEEEEEcC
Q 046394          204 ------DFSGSHNYNRYMGYSMVKGYQIGKVSFRPYE-DVLGIGHSMGVSGILIPG  252 (378)
Q Consensus       204 ------~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g-~~l~~~~~~g~~~~~~~~  252 (378)
                            .+|+.....++..+.. |...|++++|+|++ .+|++++.||.+.+|...
T Consensus       282 ~~dg~v~~wd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~  336 (416)
T 2pm9_A          282 GRDNTVLLWNPESAEQLSQFPA-RGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQ  336 (416)
T ss_dssp             ESSSEEEEECSSSCCEEEEEEC-SSSCCCCEEECTTCTTEEEECCSSSEEEEEESC
T ss_pred             eCCCCEEEeeCCCCccceeecC-CCCceEEEEECCCCCCEEEEEecCCcEEEEEcc
Confidence                  7888888888888888 88999999999999 788888888877666543

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.97  E-value=1.7e-27  Score=221.69  Aligned_cols=233  Identities=15%  Similarity=0.205  Sum_probs=195.9

Q ss_pred             ceeeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeeccCCCe-eEEE
Q 046394           15 VEKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKEHGEV-LKLQ   92 (378)
Q Consensus        15 ~~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~-~~l~   92 (378)
                      ....+....|+.|++||+.+++.+..+.+|...|.+++|+|++ +|++|+.||.|++|| .++..+..+.+|... .+++
T Consensus       132 ~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~  210 (464)
T 3v7d_B          132 DNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLD  210 (464)
T ss_dssp             TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEE
T ss_pred             CCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEE
Confidence            3466777889999999999999999999999999999999988 999999999999999 567788889989876 8888


Q ss_pred             E-------EEEEEeCCCeEEEEEcCCCcE-----------------------EEEEecCCCCeeEEEEcCCCCEEEEEcC
Q 046394           93 F-------LLASINKLGQLRYQNVTMGEI-----------------------VGNFWTGLGRTDVIRVNPFNGVVSLGHS  142 (378)
Q Consensus        93 ~-------~l~s~~~d~~i~iwd~~~~~~-----------------------~~~~~~~~~~v~~~~~s~~~~~l~~~~~  142 (378)
                      |       ++++++.|++|++||+.++..                       +..+.+|...+.++  ++++.++++++.
T Consensus       211 ~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~  288 (464)
T 3v7d_B          211 IVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSY  288 (464)
T ss_dssp             EEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEET
T ss_pred             EecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeC
Confidence            8       799999999999999987652                       44566677777766  688999999999


Q ss_pred             CCe--------------eeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee---cCCceEEEEec------
Q 046394          143 GGT--------------MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL---PGHAKTLDFSR------  199 (378)
Q Consensus       143 d~~--------------~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~~sp------  199 (378)
                      |+.              +.+|...|.+++|+|++++|++++.|+.|++||+++++++.++   ...+.++.|++      
T Consensus       289 d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~  368 (464)
T 3v7d_B          289 DNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSA  368 (464)
T ss_dssp             TSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSEEEEE
T ss_pred             CCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEcCCEEEEE
Confidence            987              5679999999999999999999999999999999999999888   36788888875      


Q ss_pred             --CCCccccCCCCCceEEEeeccCCcceeeeEEcCCCCeEEEecCCCeEEEEEcCC
Q 046394          200 --KDSGDFSGSHNYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILIPGS  253 (378)
Q Consensus       200 --~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~~~s  253 (378)
                        ||...+|+...........  +...+..++|+|++.+|++|+ +|.+.+|...+
T Consensus       369 s~dg~v~vwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~  421 (464)
T 3v7d_B          369 AADGSIRGWDANDYSRKFSYH--HTNLSAITTFYVSDNILVSGS-ENQFNIYNLRS  421 (464)
T ss_dssp             ETTSEEEEEETTTCCEEEEEE--CTTCCCEEEEEECSSEEEEEE-TTEEEEEETTT
T ss_pred             eCCCcEEEEECCCCceeeeec--CCCCccEEEEEeCCCEEEEec-CCeEEEEECCC
Confidence              4555788877666554443  566788899999999888887 66666665433

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.96  E-value=9.3e-29  Score=256.55  Aligned_cols=234  Identities=18%  Similarity=0.208  Sum_probs=206.6

Q ss_pred             ceeeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEeeccCCCe-eEEEE
Q 046394           15 VEKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTELHCSKEHGEV-LKLQF   93 (378)
Q Consensus        15 ~~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~l~~   93 (378)
                      ....+....++.+++||+.++.....+.+|...|.+++|+|+|++|++++.||.|++||........+..|... .++.|
T Consensus       973 g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~ 1052 (1249)
T 3sfz_A          973 LEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRL 1052 (1249)
T ss_dssp             SSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECCBCCSSCEEEEEE
T ss_pred             CCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEEecCCCcEEEEEE
Confidence            34456667789999999999999999999999999999999999999999999999999766666666777765 88888


Q ss_pred             ----EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe--------------eeecCCCEEE
Q 046394           94 ----LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT--------------MLCHQGPVSA  155 (378)
Q Consensus        94 ----~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~--------------~~~h~~~v~~  155 (378)
                          .+++++.|+.|++||+.+++.+..+..|.+.|.+++|+|++.++++++.|+.              +.+|.+.|++
T Consensus      1053 ~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~ 1132 (1249)
T 3sfz_A         1053 LQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRC 1132 (1249)
T ss_dssp             CSSSEEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCCCCCSSCEEE
T ss_pred             cCCCcEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeeeeccCCCcEEE
Confidence                8999999999999999999999999999999999999999999999999987              6679999999


Q ss_pred             EEEecCCCEEEEEECCCeEEEEEcCCceeeeee------------cCCceEEEEecCCCc--------cccCCCCCceEE
Q 046394          156 LAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL------------PGHAKTLDFSRKDSG--------DFSGSHNYNRYM  215 (378)
Q Consensus       156 ~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~------------~~~i~~~~~sp~g~~--------~~~~~~~~~~~~  215 (378)
                      ++|+|+|++|++++.||.|++||+.+++++..+            ...|++++|+|||.+        .+|+..++..+.
T Consensus      1133 ~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~g~v~vwd~~~g~~~~ 1212 (1249)
T 3sfz_A         1133 SAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAGGYLKWWNVATGDSSQ 1212 (1249)
T ss_dssp             EEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEESSSEEEBCSSSCBCCC
T ss_pred             EEECCCCCEEEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEECCCeEEEEECCCCceee
Confidence            999999999999999999999999998876543            367999999999876        667777777777


Q ss_pred             EeeccCCcceeeeEEcCCCCeEEEecCCCeEEEE
Q 046394          216 GYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGIL  249 (378)
Q Consensus       216 ~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~  249 (378)
                      .+.. |...|++++|+|+|.+|++++.+|.+.+|
T Consensus      1213 ~~~~-~~~~i~~~~~s~dg~~l~~~~~dg~v~vw 1245 (1249)
T 3sfz_A         1213 TFYT-NGTNLKKIHVSPDFRTYVTVDNLGILYIL 1245 (1249)
T ss_dssp             CCCC-SSCCCCCCEECSSSCCEEEECTTCCEEEE
T ss_pred             eeec-cCCcccEEEECCCCCEEEEecCCcEEEEE
Confidence            7766 78889999999999888888888766555

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.96  E-value=1.1e-27  Score=238.21  Aligned_cols=216  Identities=17%  Similarity=0.131  Sum_probs=194.3

Q ss_pred             eeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeeccCCCe-eEEEE-----EEEEEeCCCeEEEEEc
Q 046394           37 NQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKEHGEV-LKLQF-----LLASINKLGQLRYQNV  109 (378)
Q Consensus        37 ~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~-~~l~~-----~l~s~~~d~~i~iwd~  109 (378)
                      ....+.+|...|.+++|+|+|.+||+|+.||.|+||| .++..+..+.+|... .+++|     +|++++.||.|++||+
T Consensus         5 ~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~   84 (814)
T 3mkq_A            5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNY   84 (814)
T ss_dssp             CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEET
T ss_pred             cceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEEC
Confidence            4567889999999999999999999999999999999 567788889989876 99999     8999999999999999


Q ss_pred             CCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe---------------eeecCCCEEEEEEec-CCCEEEEEECCCe
Q 046394          110 TMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT---------------MLCHQGPVSALAFHP-NGHLMATSGKDCK  173 (378)
Q Consensus       110 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~---------------~~~h~~~v~~~~~sp-~g~~l~t~~~d~~  173 (378)
                      .+++.+..+..|.+.|.+++|+|++.+|++++.|+.               +.+|...|.+++|+| ++++|++++.||+
T Consensus        85 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~  164 (814)
T 3mkq_A           85 NTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRT  164 (814)
T ss_dssp             TTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSE
T ss_pred             CCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCe
Confidence            999999999999999999999999999999999987               567899999999999 8899999999999


Q ss_pred             EEEEEcCCceeeeee---c-CCceEEEEec--CCCc----------cccCCCCCceEEEeeccCCcceeeeEEcCCCCeE
Q 046394          174 IKIWDLRKYEVLQTL---P-GHAKTLDFSR--KDSG----------DFSGSHNYNRYMGYSMVKGYQIGKVSFRPYEDVL  237 (378)
Q Consensus       174 i~iwd~~~~~~~~~~---~-~~i~~~~~sp--~g~~----------~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l  237 (378)
                      |++||+.++.....+   + ..+.+++|+|  ++.+          .+|+......+..+.+ |...|.+++|+|+|.+|
T Consensus       165 v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l  243 (814)
T 3mkq_A          165 VKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEG-HMSNVSFAVFHPTLPII  243 (814)
T ss_dssp             EEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEEC-CSSCEEEEEECSSSSEE
T ss_pred             EEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcC-CCCCEEEEEEcCCCCEE
Confidence            999999988877766   3 7899999999  7654          6777777777888877 88899999999999999


Q ss_pred             EEecCCCeEEEEEcCC
Q 046394          238 GIGHSMGVSGILIPGS  253 (378)
Q Consensus       238 ~~~~~~g~~~~~~~~s  253 (378)
                      ++++.||.+.+|...+
T Consensus       244 ~~~~~dg~v~vwd~~~  259 (814)
T 3mkq_A          244 ISGSEDGTLKIWNSST  259 (814)
T ss_dssp             EEEETTSCEEEEETTT
T ss_pred             EEEeCCCeEEEEECCC
Confidence            9999999888886544

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.96  E-value=8.1e-28  Score=220.77  Aligned_cols=234  Identities=12%  Similarity=0.025  Sum_probs=188.5

Q ss_pred             eeeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCC-CCeEEeeccCCCe-eEEEE
Q 046394           16 EKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRD-GTELHCSKEHGEV-LKLQF   93 (378)
Q Consensus        16 ~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~-~~l~~   93 (378)
                      ...+....++.+++||+.++.....+..| ..+....|+|++++|++|+.||.|++||.. +.....+.+|... .+++|
T Consensus        69 ~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~  147 (420)
T 3vl1_A           69 SHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKF  147 (420)
T ss_dssp             TTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEE
T ss_pred             CeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEE
Confidence            34667777999999999998887777776 445566889999999999999999999954 5555666788876 99999


Q ss_pred             -----EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe--------------ee---ecCC
Q 046394           94 -----LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT--------------ML---CHQG  151 (378)
Q Consensus        94 -----~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~--------------~~---~h~~  151 (378)
                           +|++++.|+.|++||+.+++.+..+..|...|.+++|+|++.+|++++.|+.              +.   .|..
T Consensus       148 ~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~  227 (420)
T 3vl1_A          148 FPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHD  227 (420)
T ss_dssp             CTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTC
T ss_pred             CCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCC
Confidence                 9999999999999999999999999999999999999999999999999997              22   2444


Q ss_pred             CEEEE---------------------EEecCCCEEEEEECCCeEEEEEcCCceeeeee----cCCceEEEEecCCC-c--
Q 046394          152 PVSAL---------------------AFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL----PGHAKTLDFSRKDS-G--  203 (378)
Q Consensus       152 ~v~~~---------------------~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~----~~~i~~~~~sp~g~-~--  203 (378)
                      .|.++                     +|+|+|++|++++.||.|++||+++++.+..+    ...+.+++|+|++. +  
T Consensus       228 ~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  307 (420)
T 3vl1_A          228 GVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIY  307 (420)
T ss_dssp             CEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEE
T ss_pred             CccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEE
Confidence            45444                     45789999999999999999999999887777    36799999999987 3  


Q ss_pred             --------cccCCCCCc-eEEEeeccCCcceeeeEEcCCCCeEEEecCCCeEEEEEc
Q 046394          204 --------DFSGSHNYN-RYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILIP  251 (378)
Q Consensus       204 --------~~~~~~~~~-~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~~  251 (378)
                              .+|+..... ++..+..+|..+|+++.| |++.+|++++.||.+.+|..
T Consensus       308 ~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~  363 (420)
T 3vl1_A          308 AGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDII  363 (420)
T ss_dssp             EEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEE
T ss_pred             EEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEec
Confidence                    667766543 355555546777888855 57767777776666655543

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.96  E-value=1.2e-27  Score=217.01  Aligned_cols=232  Identities=16%  Similarity=0.183  Sum_probs=184.4

Q ss_pred             eeecccceeeEEeecCCCCceEEEEcCCC-CEEEEEeCCCcEEEEeCC-CCeEEeec--cCCCe-eEEEE------EEEE
Q 046394           29 EVDILSSRNQYDIMLPELGPYTLDFTSSG-RYMAAAGCKGYPYFYNRD-GTELHCSK--EHGEV-LKLQF------LLAS   97 (378)
Q Consensus        29 ~~d~~~~~~~~~l~~~~~~v~~~~~sp~g-~~l~~~~~dg~i~iwd~~-~~~~~~~~--~~~~~-~~l~~------~l~s   97 (378)
                      ++++.+......+.+|...|.+++|+|++ ++|++|+.||.|+|||.. +.....+.  +|... .+++|      +|++
T Consensus        57 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s  136 (383)
T 3ei3_B           57 IRSLKSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFV  136 (383)
T ss_dssp             HHHHTTCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEE
T ss_pred             cccccccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEE
Confidence            44556667778899999999999999999 999999999999999954 45555544  57765 99999      8999


Q ss_pred             EeCCCeEEEEEcCCCcEEEEEecCC---CCeeEEEEcCCCCEEEEEcCCCe-------------eeecCCCEEEEEEecC
Q 046394           98 INKLGQLRYQNVTMGEIVGNFWTGL---GRTDVIRVNPFNGVVSLGHSGGT-------------MLCHQGPVSALAFHPN  161 (378)
Q Consensus        98 ~~~d~~i~iwd~~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~~~~~d~~-------------~~~h~~~v~~~~~sp~  161 (378)
                      ++.|+.|++||+.. ..+..+..+.   ..+.+++|+|++.+|++++.|+.             +.+|...|.+++|+|+
T Consensus       137 ~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~h~~~v~~~~~~~~  215 (383)
T 3ei3_B          137 SSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDGHEIFKEKLHKAKVTHAEFNPR  215 (383)
T ss_dssp             EETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTSCEEEEEECSSSCEEEEEECSS
T ss_pred             EeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCCCEEEEeccCCCcEEEEEECCC
Confidence            99999999999985 5555665443   78999999999999999999987             5679999999999999


Q ss_pred             CC-EEEEEECCCeEEEEEcCC----ceeeeee--cCCceEEEEec-CCCc----------cccCCCCCceEEEeec----
Q 046394          162 GH-LMATSGKDCKIKIWDLRK----YEVLQTL--PGHAKTLDFSR-KDSG----------DFSGSHNYNRYMGYSM----  219 (378)
Q Consensus       162 g~-~l~t~~~d~~i~iwd~~~----~~~~~~~--~~~i~~~~~sp-~g~~----------~~~~~~~~~~~~~~~~----  219 (378)
                      +. +|++++.|+.|++||+++    +.++..+  ...+.+++|+| +|.+          .+|+.........+.+    
T Consensus       216 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~  295 (383)
T 3ei3_B          216 CDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHR  295 (383)
T ss_dssp             CTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBC
T ss_pred             CCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccccccccc
Confidence            98 999999999999999998    6666666  47899999999 8875          5565555444444332    


Q ss_pred             --cCCcceeeeEEcCCCCeEEEe-cCCCeEEEEEcCCCCcccccccCCCc
Q 046394          220 --VKGYQIGKVSFRPYEDVLGIG-HSMGVSGILIPGSGEPNFDSWVANPF  266 (378)
Q Consensus       220 --~~~~~v~~~~~sp~g~~l~~~-~~~g~~~~~~~~s~d~~i~~w~~~~~  266 (378)
                        .|...+. +.|+|++..++++ +.+|..    +++.|+.|++|+....
T Consensus       296 ~~~~~~~~~-~~~~p~~~~~~~~~s~dg~~----s~s~d~~i~iwd~~~~  340 (383)
T 3ei3_B          296 QFQHLTPIK-ATWHPMYDLIVAGRYPDDQL----LLNDKRTIDIYDANSG  340 (383)
T ss_dssp             CCTTSCCCC-CEECSSSSEEEEECBCCTTT----CTTCCCCEEEEETTTC
T ss_pred             ccccccceE-EeccCCCCceEEEecCCccc----ccCCCCeEEEEecCCC
Confidence              1234444 5889988877655 345532    8888999999987543

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.96  E-value=1.3e-27  Score=215.61  Aligned_cols=211  Identities=14%  Similarity=0.102  Sum_probs=180.2

Q ss_pred             eecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCCC---eEEeeccCCCe-eEEEE-----EEEEEeCCCeEEEEEcCC
Q 046394           41 IMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGT---ELHCSKEHGEV-LKLQF-----LLASINKLGQLRYQNVTM  111 (378)
Q Consensus        41 l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~-~~l~~-----~l~s~~~d~~i~iwd~~~  111 (378)
                      +..|...|.+++|+|++++|++|+.||.|++||..+.   .+..+.+|... .+++|     +|++++.|+.|++||+.+
T Consensus         4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~   83 (372)
T 1k8k_C            4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKG   83 (372)
T ss_dssp             EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEET
T ss_pred             ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCC
Confidence            4558899999999999999999999999999996544   77888888876 99999     899999999999999998


Q ss_pred             CcEEEEE--ecCCCCeeEEEEcCCCCEEEEEcCCCe------------------eeecCCCEEEEEEecCCCEEEEEECC
Q 046394          112 GEIVGNF--WTGLGRTDVIRVNPFNGVVSLGHSGGT------------------MLCHQGPVSALAFHPNGHLMATSGKD  171 (378)
Q Consensus       112 ~~~~~~~--~~~~~~v~~~~~s~~~~~l~~~~~d~~------------------~~~h~~~v~~~~~sp~g~~l~t~~~d  171 (378)
                      ++....+  ..|...+.+++|+|++.+|++++.++.                  ...|...|.+++|+|++++|++++.|
T Consensus        84 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  163 (372)
T 1k8k_C           84 RTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCD  163 (372)
T ss_dssp             TEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETT
T ss_pred             CeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCC
Confidence            8755444  567889999999999999999999887                  24578899999999999999999999


Q ss_pred             CeEEEEEcC------------------Cceeeeee---cCCceEEEEecCCCc----------cccCCCCCceEEEeecc
Q 046394          172 CKIKIWDLR------------------KYEVLQTL---PGHAKTLDFSRKDSG----------DFSGSHNYNRYMGYSMV  220 (378)
Q Consensus       172 ~~i~iwd~~------------------~~~~~~~~---~~~i~~~~~sp~g~~----------~~~~~~~~~~~~~~~~~  220 (378)
                      +.|++||++                  .+.++..+   ...+.+++|+|++.+          .+|+.....++..+.. 
T Consensus       164 g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-  242 (372)
T 1k8k_C          164 FKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLAS-  242 (372)
T ss_dssp             SCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEEC-
T ss_pred             CCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEcc-
Confidence            999999954                  57777777   367999999998864          6777777788888887 


Q ss_pred             CCcceeeeEEcCCCCeEEEecCCCeEEEEEcCC
Q 046394          221 KGYQIGKVSFRPYEDVLGIGHSMGVSGILIPGS  253 (378)
Q Consensus       221 ~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~~~s  253 (378)
                      |..+|.+++|+|++.+|++| .+|.+.+|....
T Consensus       243 ~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~  274 (372)
T 1k8k_C          243 ETLPLLAVTFITESSLVAAG-HDCFPVLFTYDS  274 (372)
T ss_dssp             SSCCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred             CCCCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence            88899999999999888877 667666665433

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.96  E-value=2.7e-27  Score=235.27  Aligned_cols=230  Identities=13%  Similarity=0.085  Sum_probs=202.0

Q ss_pred             eeeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeeccCCCe-eEEEE
Q 046394           16 EKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKEHGEV-LKLQF   93 (378)
Q Consensus        16 ~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~-~~l~~   93 (378)
                      ...+....++.|++||+.++..+..+.+|...|.+++|+|++++|++|+.||.|++|| .++..+..+.+|.+. .+++|
T Consensus        26 ~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~  105 (814)
T 3mkq_A           26 PWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAV  105 (814)
T ss_dssp             SEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE
T ss_pred             CEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEE
Confidence            3455566789999999999999999999999999999999999999999999999999 567888889989876 99999


Q ss_pred             -----EEEEEeCCCeEEEEEcCCC-cEEEEEecCCCCeeEEEEcC-CCCEEEEEcCCCe--------------ee-ecCC
Q 046394           94 -----LLASINKLGQLRYQNVTMG-EIVGNFWTGLGRTDVIRVNP-FNGVVSLGHSGGT--------------ML-CHQG  151 (378)
Q Consensus        94 -----~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~--------------~~-~h~~  151 (378)
                           .+++++.||.|++||+.++ .....+..|...|.+++|+| ++..|++++.|+.              +. .|..
T Consensus       106 s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~  185 (814)
T 3mkq_A          106 HPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQER  185 (814)
T ss_dssp             CSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTT
T ss_pred             eCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCC
Confidence                 8999999999999999987 67788888999999999999 8899999999987              22 3448


Q ss_pred             CEEEEEEec--CCCEEEEEECCCeEEEEEcCCceeeeee---cCCceEEEEecCCCc----------cccCCCCCceEEE
Q 046394          152 PVSALAFHP--NGHLMATSGKDCKIKIWDLRKYEVLQTL---PGHAKTLDFSRKDSG----------DFSGSHNYNRYMG  216 (378)
Q Consensus       152 ~v~~~~~sp--~g~~l~t~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~~sp~g~~----------~~~~~~~~~~~~~  216 (378)
                      .+.+++|+|  ++.+|++++.||.|++||+.++.++..+   ...+.+++|+|+|.+          .+|+..+......
T Consensus       186 ~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~  265 (814)
T 3mkq_A          186 GVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKT  265 (814)
T ss_dssp             CCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEE
T ss_pred             CEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEE
Confidence            899999999  9999999999999999999999998888   368999999998764          6777777777777


Q ss_pred             eeccCCcceeeeEEcCCCC--eEEEecCCCeE
Q 046394          217 YSMVKGYQIGKVSFRPYED--VLGIGHSMGVS  246 (378)
Q Consensus       217 ~~~~~~~~v~~~~~sp~g~--~l~~~~~~g~~  246 (378)
                      +.. +...|.+++|+|+|.  +++++.+++..
T Consensus       266 ~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~  296 (814)
T 3mkq_A          266 LNV-GLERSWCIATHPTGRKNYIASGFDNGFT  296 (814)
T ss_dssp             ECC-SSSSEEEEEECTTCGGGEEEEEETTEEE
T ss_pred             eec-CCCcEEEEEEccCCCceEEEEEeCCCEE
Confidence            777 778899999999997  57777776643

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.96  E-value=6.9e-28  Score=220.23  Aligned_cols=233  Identities=10%  Similarity=0.044  Sum_probs=185.1

Q ss_pred             CCeeecCCceeeEE--Eeccceeeeeecccce----eeEEeecCCCCceEEEEcC-CCCEEEEEeCCCcEEEEeCC-C--
Q 046394            7 GGYLEAEGVEKTWR--IKQEAIAREVDILSSR----NQYDIMLPELGPYTLDFTS-SGRYMAAAGCKGYPYFYNRD-G--   76 (378)
Q Consensus         7 ~~~l~~~~~~~~~~--~~~~~~i~~~d~~~~~----~~~~l~~~~~~v~~~~~sp-~g~~l~~~~~dg~i~iwd~~-~--   76 (378)
                      ..++........+.  ...++.|.+|++....    ....+.+|...|.+++|+| ++.+|++|+.||.|+|||.. +  
T Consensus        37 ~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~  116 (402)
T 2aq5_A           37 SGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGL  116 (402)
T ss_dssp             SCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCC
T ss_pred             CCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCC
Confidence            33444444333333  3568999999986542    3445788999999999999 99999999999999999953 3  


Q ss_pred             -----CeEEeeccCCCe-eEEEE------EEEEEeCCCeEEEEEcCCCcEEEEE--ecCCCCeeEEEEcCCCCEEEEEcC
Q 046394           77 -----TELHCSKEHGEV-LKLQF------LLASINKLGQLRYQNVTMGEIVGNF--WTGLGRTDVIRVNPFNGVVSLGHS  142 (378)
Q Consensus        77 -----~~~~~~~~~~~~-~~l~~------~l~s~~~d~~i~iwd~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~~~~  142 (378)
                           ..+..+.+|... .+++|      +|++++.|+.|++||+.+++.+..+  ..|...|.+++|+|++.+|++++.
T Consensus       117 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  196 (402)
T 2aq5_A          117 VLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCR  196 (402)
T ss_dssp             SSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEET
T ss_pred             ccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEec
Confidence                 467788889876 99999      8999999999999999999999999  789999999999999999999999


Q ss_pred             CCe--------------e-eecCCC-EEEEEEecCCCEEEEE---ECCCeEEEEEcCCcee-ee--ee--cCCceEEEEe
Q 046394          143 GGT--------------M-LCHQGP-VSALAFHPNGHLMATS---GKDCKIKIWDLRKYEV-LQ--TL--PGHAKTLDFS  198 (378)
Q Consensus       143 d~~--------------~-~~h~~~-v~~~~~sp~g~~l~t~---~~d~~i~iwd~~~~~~-~~--~~--~~~i~~~~~s  198 (378)
                      |+.              + .+|.+. +.+++|+|++.+|+++   +.|+.|++||++++.. +.  .+  ...+.+++|+
T Consensus       197 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s  276 (402)
T 2aq5_A          197 DKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFD  276 (402)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEE
T ss_pred             CCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEc
Confidence            987              3 567765 8999999999999999   7899999999998664 32  22  4678999999


Q ss_pred             cCCCc-----------cccCCCCCce-EEEeec-cCCcceeeeEEcCCCCeEEE
Q 046394          199 RKDSG-----------DFSGSHNYNR-YMGYSM-VKGYQIGKVSFRPYEDVLGI  239 (378)
Q Consensus       199 p~g~~-----------~~~~~~~~~~-~~~~~~-~~~~~v~~~~~sp~g~~l~~  239 (378)
                      |+|.+           .+|+.....+ +..+.. .+..+|.+++|+|++.++++
T Consensus       277 ~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s  330 (402)
T 2aq5_A          277 PDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN  330 (402)
T ss_dssp             TTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG
T ss_pred             CCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee
Confidence            98875           4444444442 222222 14578999999999977654

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.96  E-value=2.1e-27  Score=214.05  Aligned_cols=196  Identities=14%  Similarity=0.134  Sum_probs=149.4

Q ss_pred             ccceeeeeecccceeeEE----e-----ecCCCCceEEEEcCCCCEEEEEe--CCCcEEEEe-CCCCeEEeeccCCCeeE
Q 046394           23 QEAIAREVDILSSRNQYD----I-----MLPELGPYTLDFTSSGRYMAAAG--CKGYPYFYN-RDGTELHCSKEHGEVLK   90 (378)
Q Consensus        23 ~~~~i~~~d~~~~~~~~~----l-----~~~~~~v~~~~~sp~g~~l~~~~--~dg~i~iwd-~~~~~~~~~~~~~~~~~   90 (378)
                      .++.+++|++.+......    .     ..+...+.+++|||||++|++++  .|++|+||| .++.++..+..+..+.+
T Consensus       102 ~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~~~~V~~  181 (365)
T 4h5i_A          102 GNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIETRGEVKD  181 (365)
T ss_dssp             CCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEECSSCCCE
T ss_pred             CCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeCCCCceEE
Confidence            467788888866533221    1     12334578999999999887654  689999999 55666777765555699


Q ss_pred             EEE-----EEEEEeCCCeEEEEEcCCCcEEEE--EecCCCCeeEEEEcCCCCEEEEEcCCCe------------------
Q 046394           91 LQF-----LLASINKLGQLRYQNVTMGEIVGN--FWTGLGRTDVIRVNPFNGVVSLGHSGGT------------------  145 (378)
Q Consensus        91 l~~-----~l~s~~~d~~i~iwd~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~d~~------------------  145 (378)
                      ++|     ++++++. +.+.+|+..++..+..  ...|...+.+++|+|++.++++++.++.                  
T Consensus       182 v~fspdg~~l~s~s~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~  260 (365)
T 4h5i_A          182 LHFSTDGKVVAYITG-SSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVL  260 (365)
T ss_dssp             EEECTTSSEEEEECS-SCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEE
T ss_pred             EEEccCCceEEeccc-eeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecce
Confidence            999     7888775 5577777777776543  3356778999999999999999987763                  


Q ss_pred             ----eeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeeecCCceEEEEecCCCccccCCCCCceEEEeeccC
Q 046394          146 ----MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHAKTLDFSRKDSGDFSGSHNYNRYMGYSMVK  221 (378)
Q Consensus       146 ----~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~~~~i~~~~~sp~g~~~~~~~~~~~~~~~~~~~~  221 (378)
                          +.+|...|++++|+|+|++||+|+.|++|+|||+.+++++.++                            ..+ |
T Consensus       261 ~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~----------------------------~~g-H  311 (365)
T 4h5i_A          261 RSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIF----------------------------KQA-H  311 (365)
T ss_dssp             EEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEE----------------------------TTS-S
T ss_pred             eeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEe----------------------------cCc-c
Confidence                4578899999999999999999999999999999887654321                            234 8


Q ss_pred             CcceeeeEEcCCCCeEEEecCCCeEEE
Q 046394          222 GYQIGKVSFRPYEDVLGIGHSMGVSGI  248 (378)
Q Consensus       222 ~~~v~~~~~sp~g~~l~~~~~~g~~~~  248 (378)
                      ..+|++|+|+|||++||+|+.|+.+++
T Consensus       312 ~~~V~~v~fSpdg~~laS~S~D~tvrv  338 (365)
T 4h5i_A          312 SFAITEVTISPDSTYVASVSAANTIHI  338 (365)
T ss_dssp             SSCEEEEEECTTSCEEEEEETTSEEEE
T ss_pred             cCCEEEEEECCCCCEEEEEeCCCeEEE
Confidence            889999999999977766666654333

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1.6e-27  Score=220.17  Aligned_cols=233  Identities=12%  Similarity=0.114  Sum_probs=179.8

Q ss_pred             ceeeEEEeccceeeeeeccc---ce---eeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeC----CCCeEEeecc
Q 046394           15 VEKTWRIKQEAIAREVDILS---SR---NQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNR----DGTELHCSKE   84 (378)
Q Consensus        15 ~~~~~~~~~~~~i~~~d~~~---~~---~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~----~~~~~~~~~~   84 (378)
                      ....+..+.|+.|++||+.+   +.   ....+ .|...|.+++|+|++.+|++|+.||.|++||+    .+..+..+..
T Consensus        76 ~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~  154 (437)
T 3gre_A           76 TPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNC  154 (437)
T ss_dssp             SCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEE
T ss_pred             CCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeecccc
Confidence            44566777899999999987   33   23333 48899999999999999999999999999996    4444332221


Q ss_pred             ------------CCC-eeEEEE-------EEEEEeCCCeEEEEEcCCCcEEEEEec--CCCCeeEEEEcCCCCEEEEEcC
Q 046394           85 ------------HGE-VLKLQF-------LLASINKLGQLRYQNVTMGEIVGNFWT--GLGRTDVIRVNPFNGVVSLGHS  142 (378)
Q Consensus        85 ------------~~~-~~~l~~-------~l~s~~~d~~i~iwd~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~  142 (378)
                                  +.. +.++.+       ++++++.|+.|++||+.+++++..+..  |...|.+++|+|++.+|++|+.
T Consensus       155 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~  234 (437)
T 3gre_A          155 ECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTT  234 (437)
T ss_dssp             EEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEET
T ss_pred             ceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcC
Confidence                        222 366664       899999999999999999999999988  7899999999999999999999


Q ss_pred             CCe--------------ee-ecCCCEEEEEEec----CCCEEEEEECCCeEEEEEcCCceeeeee--c------------
Q 046394          143 GGT--------------ML-CHQGPVSALAFHP----NGHLMATSGKDCKIKIWDLRKYEVLQTL--P------------  189 (378)
Q Consensus       143 d~~--------------~~-~h~~~v~~~~~sp----~g~~l~t~~~d~~i~iwd~~~~~~~~~~--~------------  189 (378)
                      |+.              +. .|..+|.+++|+|    ++.+|++++.|+.|+|||+++++++..+  +            
T Consensus       235 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  314 (437)
T 3gre_A          235 RGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPI  314 (437)
T ss_dssp             TSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCB
T ss_pred             CCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceeccc
Confidence            997              22 6777899996664    6789999999999999999999887766  1            


Q ss_pred             ---------------CCceEEEEecCCC----------ccccCCCCCceEEEeecc------------------------
Q 046394          190 ---------------GHAKTLDFSRKDS----------GDFSGSHNYNRYMGYSMV------------------------  220 (378)
Q Consensus       190 ---------------~~i~~~~~sp~g~----------~~~~~~~~~~~~~~~~~~------------------------  220 (378)
                                     ..|++++|+ ++.          ..+|+.........+.++                        
T Consensus       315 ~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (437)
T 3gre_A          315 EKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMK  393 (437)
T ss_dssp             CSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC
T ss_pred             ccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecc
Confidence                           126677777 333          367776666555444431                        


Q ss_pred             ------------CCcceeeeEEcCC--CCeEEEecCCCeEEEE
Q 046394          221 ------------KGYQIGKVSFRPY--EDVLGIGHSMGVSGIL  249 (378)
Q Consensus       221 ------------~~~~v~~~~~sp~--g~~l~~~~~~g~~~~~  249 (378)
                                  |...|++++|+++  +.+|++|+.||.+.+|
T Consensus       394 ~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw  436 (437)
T 3gre_A          394 RTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIF  436 (437)
T ss_dssp             -------------CCCEEEEEEEESSSSEEEEEEETTSCEEEE
T ss_pred             cccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEe
Confidence                        6778999999988  6677777777766555

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.96  E-value=3.3e-27  Score=218.00  Aligned_cols=222  Identities=12%  Similarity=0.111  Sum_probs=186.5

Q ss_pred             ceeeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeeccCCCe-eEEE
Q 046394           15 VEKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKEHGEV-LKLQ   92 (378)
Q Consensus        15 ~~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~-~~l~   92 (378)
                      ....+....++.|++||+.+++....+.+|...|.+++|  ++++|++|+.||.|++|| .++..+..+.+|... .++.
T Consensus       143 ~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~  220 (435)
T 1p22_A          143 DQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLR  220 (435)
T ss_dssp             SSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEE
T ss_pred             CCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEE
Confidence            455677788999999999999999999999999999998  688999999999999999 567888899999876 9999


Q ss_pred             E---EEEEEeCCCeEEEEEcCCCcEE---EEEecCCCCeeEEEEcCCCCEEEEEcCCCe--------------eeecCCC
Q 046394           93 F---LLASINKLGQLRYQNVTMGEIV---GNFWTGLGRTDVIRVNPFNGVVSLGHSGGT--------------MLCHQGP  152 (378)
Q Consensus        93 ~---~l~s~~~d~~i~iwd~~~~~~~---~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~--------------~~~h~~~  152 (378)
                      |   .+++|+.|+.|++||+.++...   ..+..|...|.+++|  ++.++++|+.|+.              +.+|...
T Consensus       221 ~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~  298 (435)
T 1p22_A          221 FNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRG  298 (435)
T ss_dssp             CCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSC
T ss_pred             EcCCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCc
Confidence            9   9999999999999999987654   667788999999999  7899999999997              6679999


Q ss_pred             EEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee---cCCceEEEEec--------CCCccccCCCCCc---------
Q 046394          153 VSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL---PGHAKTLDFSR--------KDSGDFSGSHNYN---------  212 (378)
Q Consensus       153 v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~~sp--------~g~~~~~~~~~~~---------  212 (378)
                      |.+++|+  ++++++|+.||.|++||+++++++..+   ...+.+++|++        ||...+|+.....         
T Consensus       299 v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~  376 (435)
T 1p22_A          299 IACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTL  376 (435)
T ss_dssp             EEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTT
T ss_pred             EEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEecCCEEEEEeCCCcEEEEECCCCCCccccccch
Confidence            9999995  679999999999999999999999888   36788887733        4555677654333         


Q ss_pred             eEEEeeccCCcceeeeEEcCCCCeEEEecCCCe
Q 046394          213 RYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGV  245 (378)
Q Consensus       213 ~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~  245 (378)
                      .+..+.+ |..+|++++|  ++.+|++|+.||.
T Consensus       377 ~~~~~~~-h~~~v~~l~~--~~~~l~s~s~Dg~  406 (435)
T 1p22_A          377 CLRTLVE-HSGRVFRLQF--DEFQIVSSSHDDT  406 (435)
T ss_dssp             EEEEECC-CSSCCCCEEE--CSSCEEECCSSSE
T ss_pred             heeeccC-CCCCeEEEEe--CCCEEEEEeCCCE
Confidence            5666767 8889999999  6655555554443

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.96  E-value=2.8e-26  Score=213.39  Aligned_cols=230  Identities=12%  Similarity=0.014  Sum_probs=193.9

Q ss_pred             eeEEEeccceeeeeecccceeeEEeecCCCCceEEEEc--CCCCEEEEEeCCCcEEEEeCCCC-----------------
Q 046394           17 KTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFT--SSGRYMAAAGCKGYPYFYNRDGT-----------------   77 (378)
Q Consensus        17 ~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~s--p~g~~l~~~~~dg~i~iwd~~~~-----------------   77 (378)
                      ..+....|+.|++||+.+++.+..+.+|...|.+++|+  +++.+|++|+.||.|++||....                 
T Consensus       175 ~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~  254 (464)
T 3v7d_B          175 ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFH  254 (464)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEES
T ss_pred             EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEee
Confidence            66777889999999999999999999999999999998  57789999999999999995432                 


Q ss_pred             -------eEEeeccCCCe-eEEEE---EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe-
Q 046394           78 -------ELHCSKEHGEV-LKLQF---LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT-  145 (378)
Q Consensus        78 -------~~~~~~~~~~~-~~l~~---~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~-  145 (378)
                             .+..+.+|... .++..   ++++++.|+.|++||+.+++++..+..|...|.+++|+|++.++++++.|+. 
T Consensus       255 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i  334 (464)
T 3v7d_B          255 TPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTI  334 (464)
T ss_dssp             CGGGCTTEEEEECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCE
T ss_pred             ccCCCeEEEEEccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcE
Confidence                   14566777765 77766   9999999999999999999999999999999999999999999999999997 


Q ss_pred             -------------eeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee--cCCceEEEEecCCCc-------
Q 046394          146 -------------MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL--PGHAKTLDFSRKDSG-------  203 (378)
Q Consensus       146 -------------~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~--~~~i~~~~~sp~g~~-------  203 (378)
                                   +.+|...|.+++|+  +.+|++++.||+|++||+.++.....+  ...+..++|+|++.+       
T Consensus       335 ~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~dg  412 (464)
T 3v7d_B          335 RIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSEN  412 (464)
T ss_dssp             EEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEECTTCCCEEEEEECSSEEEEEETT
T ss_pred             EEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeecCCCCccEEEEEeCCCEEEEecCC
Confidence                         66899999999997  579999999999999999998877666  456778888887764       


Q ss_pred             --cccCCCCCceEEEeeccCCcceeeeEEcCCCCeEEEecCCCeEEEE
Q 046394          204 --DFSGSHNYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGIL  249 (378)
Q Consensus       204 --~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~  249 (378)
                        .+|+..++..+......|...|.+++|+ .+.++++++.+|...++
T Consensus       413 ~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~  459 (464)
T 3v7d_B          413 QFNIYNLRSGKLVHANILKDADQIWSVNFK-GKTLVAAVEKDGQSFLE  459 (464)
T ss_dssp             EEEEEETTTCCEEESCTTTTCSEEEEEEEE-TTEEEEEEEETTEEEEE
T ss_pred             eEEEEECCCCcEEehhhccCCCcEEEEEec-CCEEEEEEEeCCeEEEE
Confidence              7788878877765333378899999997 34555666667755444

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.96  E-value=7.1e-27  Score=216.17  Aligned_cols=229  Identities=10%  Similarity=0.045  Sum_probs=177.2

Q ss_pred             ceeeEEEeccceeeeeecccce-----------eeEEeecCC------------CCceEEEEcCCC--CEEEEEeCCCcE
Q 046394           15 VEKTWRIKQEAIAREVDILSSR-----------NQYDIMLPE------------LGPYTLDFTSSG--RYMAAAGCKGYP   69 (378)
Q Consensus        15 ~~~~~~~~~~~~i~~~d~~~~~-----------~~~~l~~~~------------~~v~~~~~sp~g--~~l~~~~~dg~i   69 (378)
                      ....+....++.|++||+.++.           ....+.+|.            ..|.+++|+|++  .+|++++.||.|
T Consensus        40 g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i  119 (447)
T 3dw8_B           40 GELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTI  119 (447)
T ss_dssp             SSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCE
T ss_pred             CCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeE
Confidence            3445666778999999999887           477889998            889999999998  799999999999


Q ss_pred             EEEeCCCCeE----------------------------------------Ee-eccCCCe-eEEEE-----EEEEEeCCC
Q 046394           70 YFYNRDGTEL----------------------------------------HC-SKEHGEV-LKLQF-----LLASINKLG  102 (378)
Q Consensus        70 ~iwd~~~~~~----------------------------------------~~-~~~~~~~-~~l~~-----~l~s~~~d~  102 (378)
                      ++||......                                        .. ..+|... .+++|     +|++| .|+
T Consensus       120 ~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~  198 (447)
T 3dw8_B          120 KLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLSA-DDL  198 (447)
T ss_dssp             EEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEEEEE-CSS
T ss_pred             EEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCCCEEEEe-CCC
Confidence            9999543111                                        12 3567765 99999     88888 799


Q ss_pred             eEEEEEcCC-CcEEEE-------EecCCCCeeEEEEcCCC-CEEEEEcCCCe------------------eeecCC----
Q 046394          103 QLRYQNVTM-GEIVGN-------FWTGLGRTDVIRVNPFN-GVVSLGHSGGT------------------MLCHQG----  151 (378)
Q Consensus       103 ~i~iwd~~~-~~~~~~-------~~~~~~~v~~~~~s~~~-~~l~~~~~d~~------------------~~~h~~----  151 (378)
                      .|++||+.+ ++.+..       +..|...|.+++|+|++ .+|++++.|+.                  +..|..    
T Consensus       199 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  278 (447)
T 3dw8_B          199 RINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNR  278 (447)
T ss_dssp             EEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----C
T ss_pred             eEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCcccc
Confidence            999999984 444442       45788899999999999 99999999987                  334444    


Q ss_pred             --------CEEEEEEecCCCEEEEEECCCeEEEEEcCC-ceeeeee--cCC----------------ceEEEEecCCCc-
Q 046394          152 --------PVSALAFHPNGHLMATSGKDCKIKIWDLRK-YEVLQTL--PGH----------------AKTLDFSRKDSG-  203 (378)
Q Consensus       152 --------~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~-~~~~~~~--~~~----------------i~~~~~sp~g~~-  203 (378)
                              .|.+++|+|+|++|++++. +.|+|||+++ ++++..+  +..                +..++|+|+|.+ 
T Consensus       279 ~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l  357 (447)
T 3dw8_B          279 SFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVV  357 (447)
T ss_dssp             CHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEE
T ss_pred             ccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEE
Confidence                    8999999999999999999 9999999997 8887777  333                223999999875 


Q ss_pred             ---------cccCCCCCceEEEee-------------------------------ccCCcceeeeEEcCCCCeEEEecCC
Q 046394          204 ---------DFSGSHNYNRYMGYS-------------------------------MVKGYQIGKVSFRPYEDVLGIGHSM  243 (378)
Q Consensus       204 ---------~~~~~~~~~~~~~~~-------------------------------~~~~~~v~~~~~sp~g~~l~~~~~~  243 (378)
                               .+|+......+....                               ......|..++|+|+|.+||+++.+
T Consensus       358 ~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~  437 (447)
T 3dw8_B          358 MTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTN  437 (447)
T ss_dssp             EEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSS
T ss_pred             EEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEecc
Confidence                     566665554432110                               0123568899999999999999998


Q ss_pred             Ce
Q 046394          244 GV  245 (378)
Q Consensus       244 g~  245 (378)
                      +.
T Consensus       438 ~~  439 (447)
T 3dw8_B          438 NL  439 (447)
T ss_dssp             CE
T ss_pred             ee
Confidence            74

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.96  E-value=5.9e-26  Score=210.20  Aligned_cols=232  Identities=11%  Similarity=0.133  Sum_probs=199.3

Q ss_pred             ceeeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeeccCCCe-eEEE
Q 046394           15 VEKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKEHGEV-LKLQ   92 (378)
Q Consensus        15 ~~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~-~~l~   92 (378)
                      ....+....++.|++||+.+++.+..+.+|...|.+++|+  +.+|++|+.||.|++|| .++..+..+.+|... .++.
T Consensus       129 g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~  206 (445)
T 2ovr_B          129 GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMH  206 (445)
T ss_dssp             TTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEE
T ss_pred             CCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEE
Confidence            3456777889999999999999999999999999999998  56999999999999999 567778889999876 9999


Q ss_pred             E---EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe--------------eeecCCCEEE
Q 046394           93 F---LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT--------------MLCHQGPVSA  155 (378)
Q Consensus        93 ~---~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~--------------~~~h~~~v~~  155 (378)
                      |   .+++++.|++|++||+.+++.+..+..|...+.+++|  ++.++++++.|+.              +.+|...|.+
T Consensus       207 ~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~  284 (445)
T 2ovr_B          207 LHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYS  284 (445)
T ss_dssp             EETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEE
T ss_pred             ecCCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEE
Confidence            9   9999999999999999999999999999999999999  7889999999987              5678999999


Q ss_pred             EEEecCCCEEEEEECCCeEEEEEcCCceeeeee---cCCceEEEEec--------CCCccccCCCCCceEEEeec--cCC
Q 046394          156 LAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL---PGHAKTLDFSR--------KDSGDFSGSHNYNRYMGYSM--VKG  222 (378)
Q Consensus       156 ~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~~sp--------~g~~~~~~~~~~~~~~~~~~--~~~  222 (378)
                      ++|  ++.++++++.|+.|++||+++++++..+   ...+.++.+++        ||...+|+..+..++..+..  .|.
T Consensus       285 ~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~  362 (445)
T 2ovr_B          285 LQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQ  362 (445)
T ss_dssp             EEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCS
T ss_pred             EEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEeCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCC
Confidence            999  7889999999999999999999998888   35566666543        56678898888887777754  266


Q ss_pred             cceeeeEEcCCCCeEEEecCCCeEEEEEcCCC
Q 046394          223 YQIGKVSFRPYEDVLGIGHSMGVSGILIPGSG  254 (378)
Q Consensus       223 ~~v~~~~~sp~g~~l~~~~~~g~~~~~~~~s~  254 (378)
                      .+|+++.|+  +.+|++|+.||.+.+|...++
T Consensus       363 ~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~  392 (445)
T 2ovr_B          363 SAVTCLQFN--KNFVITSSDDGTVKLWDLKTG  392 (445)
T ss_dssp             SCEEEEEEC--SSEEEEEETTSEEEEEETTTC
T ss_pred             CCEEEEEEC--CCEEEEEeCCCeEEEEECCCC
Confidence            789999995  578888888887777654433

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.96  E-value=1.1e-27  Score=221.15  Aligned_cols=227  Identities=15%  Similarity=0.126  Sum_probs=174.5

Q ss_pred             eEEeecCCCCceEEEEcC-CCCEEEEEeCCCcEEEEeCC-C--CeEEeeccCCCe-eEEEE------EEEEEeCCCeEEE
Q 046394           38 QYDIMLPELGPYTLDFTS-SGRYMAAAGCKGYPYFYNRD-G--TELHCSKEHGEV-LKLQF------LLASINKLGQLRY  106 (378)
Q Consensus        38 ~~~l~~~~~~v~~~~~sp-~g~~l~~~~~dg~i~iwd~~-~--~~~~~~~~~~~~-~~l~~------~l~s~~~d~~i~i  106 (378)
                      ......|...|+||+|+| ++++||+|+.||.|+|||.. +  .....+.+|.+. ++++|      +|++|+.|++|++
T Consensus       112 ~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~i  191 (435)
T 4e54_B          112 LQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRL  191 (435)
T ss_dssp             CCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEE
T ss_pred             cccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEE
Confidence            445677888999999999 56799999999999999953 3  234556788876 99999      8999999999999


Q ss_pred             EEcCCCcEEEEEec--CCCCeeEEEEcCCCCEEEEEcCCCe-------------eeecCCCEEEEEEecCCC-EEEEEEC
Q 046394          107 QNVTMGEIVGNFWT--GLGRTDVIRVNPFNGVVSLGHSGGT-------------MLCHQGPVSALAFHPNGH-LMATSGK  170 (378)
Q Consensus       107 wd~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~d~~-------------~~~h~~~v~~~~~sp~g~-~l~t~~~  170 (378)
                      ||+.++........  +...+.+++|+|++.+|++|+.++.             +.+|...|++++|+|++. +|++++.
T Consensus       192 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~  271 (435)
T 4e54_B          192 QDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASV  271 (435)
T ss_dssp             EETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCBCCCSBCCSSCEEEEEECTTCSSEEEEEET
T ss_pred             eeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcceeEEEecccceEEeeeecCCCceEEEEecC
Confidence            99977654333332  2345788999999999999999987             678999999999999875 7889999


Q ss_pred             CCeEEEEEcCCceeeeee------cCCceEEEEecCCCc----------cccCCCCCceEEEeeccCC------cceeee
Q 046394          171 DCKIKIWDLRKYEVLQTL------PGHAKTLDFSRKDSG----------DFSGSHNYNRYMGYSMVKG------YQIGKV  228 (378)
Q Consensus       171 d~~i~iwd~~~~~~~~~~------~~~i~~~~~sp~g~~----------~~~~~~~~~~~~~~~~~~~------~~v~~~  228 (378)
                      |++|+|||++++.....+      ...|++++|+|+|.+          .+|+............ |.      ..+..+
T Consensus       272 d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~  350 (435)
T 4e54_B          272 DQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIP-HPHRHFQHLTPIKA  350 (435)
T ss_dssp             TSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECC-CCCCCCSSSCCCBC
T ss_pred             cceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEec-ccccccccceeEEE
Confidence            999999999987654433      367999999998875          5666655554444433 22      124567


Q ss_pred             EEcCCCCeEEEecCCCeEEEEEcCCCCcccccccCCC
Q 046394          229 SFRPYEDVLGIGHSMGVSGILIPGSGEPNFDSWVANP  265 (378)
Q Consensus       229 ~~sp~g~~l~~~~~~g~~~~~~~~s~d~~i~~w~~~~  265 (378)
                      .|+|++.+++++..+....++..+..++.|++|+...
T Consensus       351 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~  387 (435)
T 4e54_B          351 AWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNS  387 (435)
T ss_dssp             EECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSS
T ss_pred             EEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCC
Confidence            8999999888876533223445566677899998754

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.96  E-value=2.1e-26  Score=202.56  Aligned_cols=209  Identities=12%  Similarity=0.041  Sum_probs=178.8

Q ss_pred             eeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeC-CCCeEEeeccCCCe-eEEEE-----EEEEEeCCCeEEEEE
Q 046394           36 RNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNR-DGTELHCSKEHGEV-LKLQF-----LLASINKLGQLRYQN  108 (378)
Q Consensus        36 ~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~-~~l~~-----~l~s~~~d~~i~iwd  108 (378)
                      +....+.+|...|.+++| |++.+|++|+.||.|++||. ++.....+..|... .+++|     ++++++.|+.|++|+
T Consensus         9 ~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~   87 (313)
T 3odt_A            9 QLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVP   87 (313)
T ss_dssp             EEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred             HHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEE
Confidence            667889999999999999 99999999999999999994 55566778888775 99999     999999999999999


Q ss_pred             cCCC---cEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe------------eeecCCCEEEEEEec-CCCEEEEEECCC
Q 046394          109 VTMG---EIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT------------MLCHQGPVSALAFHP-NGHLMATSGKDC  172 (378)
Q Consensus       109 ~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~------------~~~h~~~v~~~~~sp-~g~~l~t~~~d~  172 (378)
                      +...   +.+..+..|...+.++.|  ++.++++++.++.            +..|...|.+++|+| +++++++++.|+
T Consensus        88 ~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~  165 (313)
T 3odt_A           88 LFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWKEGSLVYNLQAHNASVWDAKVVSFSENKFLTASADK  165 (313)
T ss_dssp             TTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTS
T ss_pred             eeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEcCCcEEEecccCCCceeEEEEccCCCCEEEEEECCC
Confidence            8764   567788889999999999  6789999999987            567999999999999 999999999999


Q ss_pred             eEEEEEcCCceeeeee----cCCceEEEEecCCCc---------cccCCCCCceEEEeeccCCcceeeeEEcCCCCeEEE
Q 046394          173 KIKIWDLRKYEVLQTL----PGHAKTLDFSRKDSG---------DFSGSHNYNRYMGYSMVKGYQIGKVSFRPYEDVLGI  239 (378)
Q Consensus       173 ~i~iwd~~~~~~~~~~----~~~i~~~~~sp~g~~---------~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~  239 (378)
                      .|++||.  ...+..+    ...+.+++|+|++.+         .+|+.....++..+.+ |..+|++++|+|++ .|++
T Consensus       166 ~i~i~d~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~i~~~~~~~~~-~l~~  241 (313)
T 3odt_A          166 TIKLWQN--DKVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDMHTGDVLRTYEG-HESFVYCIKLLPNG-DIVS  241 (313)
T ss_dssp             CEEEEET--TEEEEEECSSCSSCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEEC-CSSCEEEEEECTTS-CEEE
T ss_pred             CEEEEec--CceEEEEeccCcccEEEEEEcCCCeEEEccCCCeEEEEECCchhhhhhhhc-CCceEEEEEEecCC-CEEE
Confidence            9999994  4444444    467899999998763         6788888888888888 88999999999999 6888


Q ss_pred             ecCCCeEEEEEc
Q 046394          240 GHSMGVSGILIP  251 (378)
Q Consensus       240 ~~~~g~~~~~~~  251 (378)
                      ++.||.+.+|..
T Consensus       242 ~~~dg~v~iwd~  253 (313)
T 3odt_A          242 CGEDRTVRIWSK  253 (313)
T ss_dssp             EETTSEEEEECT
T ss_pred             EecCCEEEEEEC
Confidence            888887776643

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.96  E-value=4.2e-27  Score=209.82  Aligned_cols=224  Identities=8%  Similarity=-0.017  Sum_probs=191.0

Q ss_pred             eeeEEEeccceeeeeecccce---eeEEeecCCCCceEEEEcCCCC-EEEEEeCCCcEEEEeC-CCCeEEeecc--CCCe
Q 046394           16 EKTWRIKQEAIAREVDILSSR---NQYDIMLPELGPYTLDFTSSGR-YMAAAGCKGYPYFYNR-DGTELHCSKE--HGEV   88 (378)
Q Consensus        16 ~~~~~~~~~~~i~~~d~~~~~---~~~~l~~~~~~v~~~~~sp~g~-~l~~~~~dg~i~iwd~-~~~~~~~~~~--~~~~   88 (378)
                      ...+....++.|++||+.++.   ....+..|...|.+++|+|++. +|++|+.||.|++||. .......+.+  |...
T Consensus        24 ~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~  103 (342)
T 1yfq_A           24 SLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLG  103 (342)
T ss_dssp             TEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSC
T ss_pred             CEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCceEeccccCCCCc
Confidence            445666788999999998887   3456668999999999999999 9999999999999998 8888888888  8876


Q ss_pred             -eEEEE----EEEEEeCCCeEEEEEcCC---------CcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe---------
Q 046394           89 -LKLQF----LLASINKLGQLRYQNVTM---------GEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT---------  145 (378)
Q Consensus        89 -~~l~~----~l~s~~~d~~i~iwd~~~---------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~---------  145 (378)
                       .+++|    .+++++.|+.|++||+.+         ++++..+. +...+.+++|+|++  +++++.++.         
T Consensus       104 v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~  180 (342)
T 1yfq_A          104 ICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLC  180 (342)
T ss_dssp             EEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE--EEEEESTTEEEEEESSCC
T ss_pred             eEEEEeCCCCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecCCc--EEEEeCCCeEEEEECCcc
Confidence             99999    899999999999999987         66666665 77899999999988  888887765         


Q ss_pred             --------eeecCCCEEEEEEec-CCCEEEEEECCCeEEEEEcCCc------eeeeee--c-C---------CceEEEEe
Q 046394          146 --------MLCHQGPVSALAFHP-NGHLMATSGKDCKIKIWDLRKY------EVLQTL--P-G---------HAKTLDFS  198 (378)
Q Consensus       146 --------~~~h~~~v~~~~~sp-~g~~l~t~~~d~~i~iwd~~~~------~~~~~~--~-~---------~i~~~~~s  198 (378)
                              ...|...|.+++|+| ++++|++++.||.|++||+...      .....+  + .         .+.+++|+
T Consensus       181 ~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s  260 (342)
T 1yfq_A          181 EDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFS  260 (342)
T ss_dssp             TTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEEC
T ss_pred             ccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEc
Confidence                    224677899999999 9999999999999999999876      666666  2 2         89999999


Q ss_pred             cCCCc----------cccCCCCCceEEEeeccC-CcceeeeEEcCCCCeEEEecCCCe
Q 046394          199 RKDSG----------DFSGSHNYNRYMGYSMVK-GYQIGKVSFRPYEDVLGIGHSMGV  245 (378)
Q Consensus       199 p~g~~----------~~~~~~~~~~~~~~~~~~-~~~v~~~~~sp~g~~l~~~~~~g~  245 (378)
                      |+|.+          .+|+..+...+..+.. | ..+|++++  |+|.+|++++.||.
T Consensus       261 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-~h~~~v~~~~--~~~~~l~s~s~Dg~  315 (342)
T 1yfq_A          261 PRHKFLYTAGSDGIISCWNLQTRKKIKNFAK-FNEDSVVKIA--CSDNILCLATSDDT  315 (342)
T ss_dssp             TTTCCEEEEETTSCEEEEETTTTEEEEECCC-CSSSEEEEEE--ECSSEEEEEEECTH
T ss_pred             CCCCEEEEecCCceEEEEcCccHhHhhhhhc-ccCCCceEec--CCCCeEEEEecCCc
Confidence            98874          6788888888888877 6 89999999  99988888888773

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.95  E-value=5.4e-27  Score=216.95  Aligned_cols=209  Identities=13%  Similarity=0.119  Sum_probs=167.6

Q ss_pred             CCCCceEEEEcCCCCEEEEEeCCCcEEEEeCC-CC-----------eEEeeccCC------------Ce-eEEEE-----
Q 046394           44 PELGPYTLDFTSSGRYMAAAGCKGYPYFYNRD-GT-----------ELHCSKEHG------------EV-LKLQF-----   93 (378)
Q Consensus        44 ~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~-~~-----------~~~~~~~~~------------~~-~~l~~-----   93 (378)
                      +.+.|.+++|+|+|++||+|+.||.|+|||.. +.           ....+.+|.            +. ++++|     
T Consensus        27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~  106 (447)
T 3dw8_B           27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKN  106 (447)
T ss_dssp             GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCS
T ss_pred             ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCC
Confidence            45789999999999999999999999999944 33           367788896            54 99999     


Q ss_pred             --EEEEEeCCCeEEEEEcCCCcEE---------------------------------------EE-EecCCCCeeEEEEc
Q 046394           94 --LLASINKLGQLRYQNVTMGEIV---------------------------------------GN-FWTGLGRTDVIRVN  131 (378)
Q Consensus        94 --~l~s~~~d~~i~iwd~~~~~~~---------------------------------------~~-~~~~~~~v~~~~~s  131 (378)
                        .|++++.|++|++||+.++...                                       .. ...|...|.+++|+
T Consensus       107 ~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~  186 (447)
T 3dw8_B          107 AAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISIN  186 (447)
T ss_dssp             SSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEEC
T ss_pred             cceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEc
Confidence              6999999999999999764432                                       12 35688999999999


Q ss_pred             CCCCEEEEEcCCCe------------e----------eecCCCEEEEEEecCC-CEEEEEECCCeEEEEEcCCcee----
Q 046394          132 PFNGVVSLGHSGGT------------M----------LCHQGPVSALAFHPNG-HLMATSGKDCKIKIWDLRKYEV----  184 (378)
Q Consensus       132 ~~~~~l~~~~~d~~------------~----------~~h~~~v~~~~~sp~g-~~l~t~~~d~~i~iwd~~~~~~----  184 (378)
                      |++.+|++| .|+.            +          .+|...|.+++|+|++ ++|++++.||.|++||++++..    
T Consensus       187 ~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  265 (447)
T 3dw8_B          187 SDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRH  265 (447)
T ss_dssp             TTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTT
T ss_pred             CCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccce
Confidence            999999998 6776            1          2688999999999998 9999999999999999999886    


Q ss_pred             eeee--c-C------------CceEEEEecCCCc---------cccCCCC-CceEEEeeccCCcc---------------
Q 046394          185 LQTL--P-G------------HAKTLDFSRKDSG---------DFSGSHN-YNRYMGYSMVKGYQ---------------  224 (378)
Q Consensus       185 ~~~~--~-~------------~i~~~~~sp~g~~---------~~~~~~~-~~~~~~~~~~~~~~---------------  224 (378)
                      +..+  + .            .+.+++|+|+|.+         .+|+... ..++..+.+ |...               
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~iwd~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~i~~  344 (447)
T 3dw8_B          266 SKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPVETYQV-HEYLRSKLCSLYENDCIFD  344 (447)
T ss_dssp             CEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEESSEEEEEETTCCSSCSCCEES-CGGGTTTHHHHHHTSGGGC
T ss_pred             eeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeCCeEEEEeCCCCccccceeec-ccccccccccccccccccc
Confidence            5666  3 2            8999999999886         4566554 555555555 4321               


Q ss_pred             eeeeEEcCCCCeEEEecCCCeEEEEEcCCC
Q 046394          225 IGKVSFRPYEDVLGIGHSMGVSGILIPGSG  254 (378)
Q Consensus       225 v~~~~~sp~g~~l~~~~~~g~~~~~~~~s~  254 (378)
                      +..++|+|+|.+|++|+.||.+.+|...++
T Consensus       345 ~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~  374 (447)
T 3dw8_B          345 KFECCWNGSDSVVMTGSYNNFFRMFDRNTK  374 (447)
T ss_dssp             CCCEEECTTSSEEEEECSTTEEEEEETTTC
T ss_pred             ceEEEECCCCCEEEEeccCCEEEEEEcCCC
Confidence            234899999999999998888777765443

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.95  E-value=5.2e-26  Score=210.55  Aligned_cols=224  Identities=12%  Similarity=0.096  Sum_probs=195.1

Q ss_pred             eeeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeeccCCCe-eEEEE
Q 046394           16 EKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKEHGEV-LKLQF   93 (378)
Q Consensus        16 ~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~-~~l~~   93 (378)
                      ...+....|+.|++||+.+++.+..+.+|...|.+++|+  +.+|++|+.||.|++|| .++..+..+.+|... .++.|
T Consensus       170 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~  247 (445)
T 2ovr_B          170 NIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY  247 (445)
T ss_dssp             TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE
T ss_pred             CEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE
Confidence            345666778999999999999999999999999999996  56899999999999999 567788889999876 99999


Q ss_pred             ---EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe--------------eeecCCCEEEE
Q 046394           94 ---LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT--------------MLCHQGPVSAL  156 (378)
Q Consensus        94 ---~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~--------------~~~h~~~v~~~  156 (378)
                         .+++++.|+.|++||+.+++++..+..|...+.++.|  ++.++++++.|+.              +.+|...+.++
T Consensus       248 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~  325 (445)
T 2ovr_B          248 DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGM  325 (445)
T ss_dssp             CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEE
T ss_pred             CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEE
Confidence               9999999999999999999999999999999999999  8899999999987              56788888888


Q ss_pred             EEecCCCEEEEEECCCeEEEEEcCCceeeeee------cCCceEEEEec--------CCCccccCCCCCceEEEee----
Q 046394          157 AFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL------PGHAKTLDFSR--------KDSGDFSGSHNYNRYMGYS----  218 (378)
Q Consensus       157 ~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~------~~~i~~~~~sp--------~g~~~~~~~~~~~~~~~~~----  218 (378)
                      .++  +++|++++.||.|++||+++++++..+      ...+.+++|++        ||...+|+..++..+..+.    
T Consensus       326 ~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~  403 (445)
T 2ovr_B          326 ELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLES  403 (445)
T ss_dssp             EEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEEECTT
T ss_pred             EEe--CCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEECCCEEEEEeCCCeEEEEECCCCceeeeeecccc
Confidence            775  669999999999999999999988887      24688888865        5566889888888777662    


Q ss_pred             ccCCcceeeeEEcCCCCeEEEecCCCe
Q 046394          219 MVKGYQIGKVSFRPYEDVLGIGHSMGV  245 (378)
Q Consensus       219 ~~~~~~v~~~~~sp~g~~l~~~~~~g~  245 (378)
                      ..+...|++++|+|+|.+|++|+.||.
T Consensus       404 ~~~~~~v~~~~~s~~~~~la~~~~dg~  430 (445)
T 2ovr_B          404 GGSGGVVWRIRASNTKLVCAVGSRNGT  430 (445)
T ss_dssp             GGGTCEEEEEEECSSEEEEEEECSSSS
T ss_pred             CCCCceEEEEEecCCEEEEEEcccCCC
Confidence            127788999999999988888888874

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.95  E-value=3.8e-26  Score=205.34  Aligned_cols=225  Identities=8%  Similarity=0.014  Sum_probs=181.6

Q ss_pred             eeeEEEeccceeeeeeccc-ceee-EEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEeeccCCCe-eEEE
Q 046394           16 EKTWRIKQEAIAREVDILS-SRNQ-YDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTELHCSKEHGEV-LKLQ   92 (378)
Q Consensus        16 ~~~~~~~~~~~i~~~d~~~-~~~~-~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~l~   92 (378)
                      ...+....++.|++||+.+ +... ..+.+|...|.+++|+|++++|++|+.||.|++||........+..|... .+++
T Consensus        55 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~  134 (368)
T 3mmy_A           55 NFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIH  134 (368)
T ss_dssp             EEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEE
T ss_pred             eEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCceeeccccCceEEEE
Confidence            5667777899999999997 5444 77889999999999999999999999999999999766666667777765 8888


Q ss_pred             E-------EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe----------------eeec
Q 046394           93 F-------LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT----------------MLCH  149 (378)
Q Consensus        93 ~-------~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~----------------~~~h  149 (378)
                      |       +|++++.|+.|++||+.+++.+..+..+ ..+.++.+.+  ..+++++.++.                ...+
T Consensus       135 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  211 (368)
T 3mmy_A          135 WIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLP-ERCYCADVIY--PMAVVATAERGLIVYQLENQPSEFRRIESPL  211 (368)
T ss_dssp             EEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECS-SCEEEEEEET--TEEEEEEGGGCEEEEECSSSCEEEEECCCSC
T ss_pred             EEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecC-CCceEEEecC--CeeEEEeCCCcEEEEEeccccchhhhccccc
Confidence            7       7999999999999999999988888765 3555665554  46666666655                1123


Q ss_pred             CCCEEEEEEecCCCE----EEEEECCCeEEEEEcCCc---eeeeee--cC-------------CceEEEEecCCCc----
Q 046394          150 QGPVSALAFHPNGHL----MATSGKDCKIKIWDLRKY---EVLQTL--PG-------------HAKTLDFSRKDSG----  203 (378)
Q Consensus       150 ~~~v~~~~~sp~g~~----l~t~~~d~~i~iwd~~~~---~~~~~~--~~-------------~i~~~~~sp~g~~----  203 (378)
                      ...+.++++.+++..    +++++.|+.|++||++..   ..+..+  +.             .+++++|+|+|.+    
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~  291 (368)
T 3mmy_A          212 KHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATV  291 (368)
T ss_dssp             SSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEE
T ss_pred             cCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEE
Confidence            455677777765554    999999999999999986   445555  22             6999999998865    


Q ss_pred             ------cccCCCCCceEEEeeccCCcceeeeEEcCCCCeEEEecCCC
Q 046394          204 ------DFSGSHNYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMG  244 (378)
Q Consensus       204 ------~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g  244 (378)
                            .+|+.....++..+.. |..+|++++|+|+|.+|++++.++
T Consensus       292 ~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~s~~g~~l~~~s~d~  337 (368)
T 3mmy_A          292 GSDGRFSFWDKDARTKLKTSEQ-LDQPISACCFNHNGNIFAYASSYD  337 (368)
T ss_dssp             ETTSCEEEEETTTTEEEEECCC-CSSCEEEEEECTTSSCEEEEECCC
T ss_pred             ccCCeEEEEECCCCcEEEEecC-CCCCceEEEECCCCCeEEEEeccc
Confidence                  7788888888888877 889999999999999999998876

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.95  E-value=4.2e-26  Score=210.25  Aligned_cols=218  Identities=13%  Similarity=0.183  Sum_probs=171.9

Q ss_pred             eeeEEEeccceeeeeeccc----------ceeeEEeecCCCCceEEEEcCCCC-EEEEEeCCCcEEEEeCCC-----Ce-
Q 046394           16 EKTWRIKQEAIAREVDILS----------SRNQYDIMLPELGPYTLDFTSSGR-YMAAAGCKGYPYFYNRDG-----TE-   78 (378)
Q Consensus        16 ~~~~~~~~~~~i~~~d~~~----------~~~~~~l~~~~~~v~~~~~sp~g~-~l~~~~~dg~i~iwd~~~-----~~-   78 (378)
                      ...+....++.|++||+.+          ......+.+|...|++++|+|++. +|++|+.||.|++||+..     .. 
T Consensus       142 ~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~  221 (430)
T 2xyi_A          142 CVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVI  221 (430)
T ss_dssp             EEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEE
T ss_pred             cEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCcee
Confidence            3455556789999999987          678889999999999999999998 999999999999999643     11 


Q ss_pred             --EEeeccCCCe-eEEEE------EEEEEeCCCeEEEEEcCCC---cEEEEEecCCCCeeEEEEcCCCC-EEEEEcCCCe
Q 046394           79 --LHCSKEHGEV-LKLQF------LLASINKLGQLRYQNVTMG---EIVGNFWTGLGRTDVIRVNPFNG-VVSLGHSGGT  145 (378)
Q Consensus        79 --~~~~~~~~~~-~~l~~------~l~s~~~d~~i~iwd~~~~---~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~d~~  145 (378)
                        ...+.+|... .+++|      +|++++.|+.|++||++++   ..+..+..|...|++++|+|++. +|++|+.++.
T Consensus       222 ~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~  301 (430)
T 2xyi_A          222 DAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKT  301 (430)
T ss_dssp             ECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSE
T ss_pred             ccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCe
Confidence              3556678765 99999      8999999999999999987   56777888889999999999886 7889988887


Q ss_pred             ---------------eeecCCCEEEEEEecCCC-EEEEEECCCeEEEEEcCCceeeeeecCCceEEEEecCCCccccCCC
Q 046394          146 ---------------MLCHQGPVSALAFHPNGH-LMATSGKDCKIKIWDLRKYEVLQTLPGHAKTLDFSRKDSGDFSGSH  209 (378)
Q Consensus       146 ---------------~~~h~~~v~~~~~sp~g~-~l~t~~~d~~i~iwd~~~~~~~~~~~~~i~~~~~sp~g~~~~~~~~  209 (378)
                                     +..|...|.+++|+|++. +|++++.|+.|+|||+...........               ....
T Consensus       302 v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~---------------~~~~  366 (430)
T 2xyi_A          302 VALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTED---------------AEDG  366 (430)
T ss_dssp             EEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHH---------------HHHC
T ss_pred             EEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccc---------------cccC
Confidence                           567889999999999884 689999999999999976321110000               0001


Q ss_pred             CCceEEEeeccCCcceeeeEEcCCCC-eEEEecCCCeEEEE
Q 046394          210 NYNRYMGYSMVKGYQIGKVSFRPYED-VLGIGHSMGVSGIL  249 (378)
Q Consensus       210 ~~~~~~~~~~~~~~~v~~~~~sp~g~-~l~~~~~~g~~~~~  249 (378)
                      ....+..+.+ |...|++++|+|++. +|++++.||.+.+|
T Consensus       367 ~~~~~~~~~~-h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw  406 (430)
T 2xyi_A          367 PPELLFIHGG-HTAKISDFSWNPNEPWIICSVSEDNIMQVW  406 (430)
T ss_dssp             CTTEEEECCC-CSSCEEEEEECSSSTTEEEEEETTSEEEEE
T ss_pred             CcceEEEcCC-CCCCceEEEECCCCCCEEEEEECCCCEEEe
Confidence            2345666666 888899999999998 67777666655444

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.95  E-value=2.5e-26  Score=213.01  Aligned_cols=237  Identities=11%  Similarity=-0.008  Sum_probs=183.3

Q ss_pred             eEEEeccceeeeeecccce---eeEEeecC--------------------------------------------------
Q 046394           18 TWRIKQEAIAREVDILSSR---NQYDIMLP--------------------------------------------------   44 (378)
Q Consensus        18 ~~~~~~~~~i~~~d~~~~~---~~~~l~~~--------------------------------------------------   44 (378)
                      .+....++.|++||+.+++   .+..+..+                                                  
T Consensus        18 ~l~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (450)
T 2vdu_B           18 LVFAIIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDSIKRTAAKVPSPGLG   97 (450)
T ss_dssp             EEEEEETTEEEEEEEETTTEEEEEEEEECCC-------------------------------------------------
T ss_pred             EEEEEeCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCccccccCccccCCCCC
Confidence            5566678899999999998   55555433                                                  


Q ss_pred             ----CCCceEEEEcCCCCEE-EEEeCCCcEEEEeC---CCCeEEeec--cCCC-eeEEEE-----EEEEEeCCCeEEEEE
Q 046394           45 ----ELGPYTLDFTSSGRYM-AAAGCKGYPYFYNR---DGTELHCSK--EHGE-VLKLQF-----LLASINKLGQLRYQN  108 (378)
Q Consensus        45 ----~~~v~~~~~sp~g~~l-~~~~~dg~i~iwd~---~~~~~~~~~--~~~~-~~~l~~-----~l~s~~~d~~i~iwd  108 (378)
                          ...|.+++|+|+|++| ++|+.||.|+|||.   .+..+..+.  .|.. +.+++|     +|++++.|+.|++|+
T Consensus        98 ~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~  177 (450)
T 2vdu_B           98 APPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSID  177 (450)
T ss_dssp             --CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             CCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEe
Confidence                3369999999999996 88999999999994   567777775  4444 489999     899999999999999


Q ss_pred             cCCCcEEE----EEecCCCCeeEEEEcCC---CCEEEEEcCCCe---------------eeecCCCEEEEEEecCCCEEE
Q 046394          109 VTMGEIVG----NFWTGLGRTDVIRVNPF---NGVVSLGHSGGT---------------MLCHQGPVSALAFHPNGHLMA  166 (378)
Q Consensus       109 ~~~~~~~~----~~~~~~~~v~~~~~s~~---~~~l~~~~~d~~---------------~~~h~~~v~~~~~sp~g~~l~  166 (378)
                      +.++....    .+..|...|.+++|+|+   +.+|++++.|+.               +.+|...|.+++|+ ++++|+
T Consensus       178 ~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~  256 (450)
T 2vdu_B          178 INSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLL  256 (450)
T ss_dssp             TTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEE
T ss_pred             cCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEE
Confidence            98876543    67788899999999999   999999999987               33799999999999 999999


Q ss_pred             EEECCCeEEEEEcCCceeeeee--c--------------------------CCceEEEEecCCCc-----------cccC
Q 046394          167 TSGKDCKIKIWDLRKYEVLQTL--P--------------------------GHAKTLDFSRKDSG-----------DFSG  207 (378)
Q Consensus       167 t~~~d~~i~iwd~~~~~~~~~~--~--------------------------~~i~~~~~sp~g~~-----------~~~~  207 (378)
                      +++.|++|+|||+.+++++..+  +                          ..+.+++|+|++.+           .+|+
T Consensus       257 s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~  336 (450)
T 2vdu_B          257 SAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILE  336 (450)
T ss_dssp             EEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEE
T ss_pred             EEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEE
Confidence            9999999999999999887766  1                          24678999998875           4455


Q ss_pred             C--CCC---ceEEEeeccCCcceeeeEEcCCCCeEEEecCCCeEEEEEcCCCCcccccccC
Q 046394          208 S--HNY---NRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILIPGSGEPNFDSWVA  263 (378)
Q Consensus       208 ~--~~~---~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~~~s~d~~i~~w~~  263 (378)
                      .  ...   ..+..+.. + ..|.+++|+|++.++++++.+.      +++.+..+.+|..
T Consensus       337 ~~~~~~~~l~~~~~~~~-~-~~v~~~~~~~~~~~v~~~~~~~------~~~~~~~i~v~~~  389 (450)
T 2vdu_B          337 MSEKQKGDLALKQIITF-P-YNVISLSAHNDEFQVTLDNKES------SGVQKNFAKFIEY  389 (450)
T ss_dssp             ECSSSTTCEEEEEEEEC-S-SCEEEEEEETTEEEEEECCTTC------CSSCCCSEEEEEE
T ss_pred             eccCCCCceeeccEecc-C-CceEEEEecCCcEEEEEecccC------CCCCCcceEEEEE
Confidence            4  333   44555555 4 6799999999654444444332      1233445555543

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.95  E-value=3e-27  Score=221.84  Aligned_cols=213  Identities=11%  Similarity=0.054  Sum_probs=165.3

Q ss_pred             ceeeEEeecCCCCceEEEEcCCC---------CEEEEE-------------------eCCCcEEEEeCCC-Ce----EEe
Q 046394           35 SRNQYDIMLPELGPYTLDFTSSG---------RYMAAA-------------------GCKGYPYFYNRDG-TE----LHC   81 (378)
Q Consensus        35 ~~~~~~l~~~~~~v~~~~~sp~g---------~~l~~~-------------------~~dg~i~iwd~~~-~~----~~~   81 (378)
                      +...+.+. +.+.|.+|+|+|++         ++||+|                   +.|++|+|||..+ ..    ...
T Consensus       124 ~r~~~~~~-~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~  202 (524)
T 2j04_B          124 KRRGFIYN-VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQT  202 (524)
T ss_dssp             CSCEEEEE-CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEE
T ss_pred             CcceEEEE-CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEE
Confidence            33444454 46889999999986         577664                   4678999999543 22    234


Q ss_pred             eccCCC-eeEEEE-----------EEEEEeCCCeEEEEEcCCCcE-----------EEEEecCCCCeeEEEEcCCCCEEE
Q 046394           82 SKEHGE-VLKLQF-----------LLASINKLGQLRYQNVTMGEI-----------VGNFWTGLGRTDVIRVNPFNGVVS  138 (378)
Q Consensus        82 ~~~~~~-~~~l~~-----------~l~s~~~d~~i~iwd~~~~~~-----------~~~~~~~~~~v~~~~~s~~~~~l~  138 (378)
                      +.+|.+ +.+++|           +||+++.||+|++||+.++..           ...+.+|...|.+++|+|++ .|+
T Consensus       203 l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~la  281 (524)
T 2j04_B          203 IVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TVV  281 (524)
T ss_dssp             EEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-EEE
T ss_pred             EEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-eEE
Confidence            566655 488888           689999999999999986632           24677888999999999864 899


Q ss_pred             EEcCCCe---------------eeecCCCEEEE--EEecCC-CEEEEEECCCeEEEEEcCCceeeeee--c---CCceEE
Q 046394          139 LGHSGGT---------------MLCHQGPVSAL--AFHPNG-HLMATSGKDCKIKIWDLRKYEVLQTL--P---GHAKTL  195 (378)
Q Consensus       139 ~~~~d~~---------------~~~h~~~v~~~--~~sp~g-~~l~t~~~d~~i~iwd~~~~~~~~~~--~---~~i~~~  195 (378)
                      +|+.||.               +.+|...|.+|  +|+|+| ++|+|+|.|++|+|||+++++++.++  +   ..+.++
T Consensus       282 sgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v  361 (524)
T 2j04_B          282 CGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPV  361 (524)
T ss_dssp             EEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCE
T ss_pred             EEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccce
Confidence            9999998               56799999999  578888 89999999999999999998876666  3   247899


Q ss_pred             EEecCCCc----------cccCCCCCceEEEeeccCCcceeeeEEcCCCCeEEEecCCCeEEEEE
Q 046394          196 DFSRKDSG----------DFSGSHNYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILI  250 (378)
Q Consensus       196 ~~sp~g~~----------~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~  250 (378)
                      +|+|++..          .+|+......+..+.+ |...|++|+|+|+|++|++|+.||.+.+|.
T Consensus       362 ~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~g-H~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd  425 (524)
T 2j04_B          362 VYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVS-RETTITAIGVSRLHPMVLAGSADGSLIITN  425 (524)
T ss_dssp             EEETTTTEEEEECSSSEEEEEETTCTTCCEEEEE-CSSCEEEEECCSSCCBCEEEETTTEEECCB
T ss_pred             EeCCCcCeEEEeCCCCcEEEEECcccccceeeec-CCCceEEEEeCCCCCeEEEEECCCEEEEEe
Confidence            99998864          5677666666666777 889999999999999988888888766654

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.95  E-value=4.3e-26  Score=219.32  Aligned_cols=242  Identities=13%  Similarity=0.041  Sum_probs=205.6

Q ss_pred             eeeEEEeccceeeeeecccc--------eeeEEeecCCCCceEEEEcCCCCEEEEEeCC----CcEEEEeCCCCeEEeec
Q 046394           16 EKTWRIKQEAIAREVDILSS--------RNQYDIMLPELGPYTLDFTSSGRYMAAAGCK----GYPYFYNRDGTELHCSK   83 (378)
Q Consensus        16 ~~~~~~~~~~~i~~~d~~~~--------~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~d----g~i~iwd~~~~~~~~~~   83 (378)
                      ...+....++.|++||+.++        .....+..|...|.+++|+|++++|++++.+    +.|++|| .+..+..+.
T Consensus        79 ~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d-~~~~~~~~~  157 (615)
T 1pgu_A           79 QYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD-SGNSLGEVS  157 (615)
T ss_dssp             CEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT-TCCEEEECC
T ss_pred             CEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE-CCCcceeee
Confidence            44556677899999999855        6777888999999999999999999999987    7999999 667888899


Q ss_pred             cCCCe-eEEEE------EEEEEeCCCeEEEEEcCCCcEEEEEecCCC---CeeEEEEcCC-CCEEEEEcCCCe-------
Q 046394           84 EHGEV-LKLQF------LLASINKLGQLRYQNVTMGEIVGNFWTGLG---RTDVIRVNPF-NGVVSLGHSGGT-------  145 (378)
Q Consensus        84 ~~~~~-~~l~~------~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~---~v~~~~~s~~-~~~l~~~~~d~~-------  145 (378)
                      +|... .+++|      ++++++.|+.|++||+.+++.+..+..|..   .|.+++|+|+ +.+|++++.++.       
T Consensus       158 ~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~  237 (615)
T 1pgu_A          158 GHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGK  237 (615)
T ss_dssp             SCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETT
T ss_pred             cCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECC
Confidence            99876 99999      799999999999999999999999999988   9999999999 999999999887       


Q ss_pred             -------e-e---ecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee--c-----CCceEEEEe---------
Q 046394          146 -------M-L---CHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL--P-----GHAKTLDFS---------  198 (378)
Q Consensus       146 -------~-~---~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~--~-----~~i~~~~~s---------  198 (378)
                             + .   .|...|.+++|+ ++.+|++++.|+.|++||+.+++++..+  +     ..+.++.|+         
T Consensus       238 ~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  316 (615)
T 1pgu_A          238 SGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLS  316 (615)
T ss_dssp             TCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEE
T ss_pred             CCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEE
Confidence                   3 4   899999999999 9999999999999999999999988877  3     345666664         


Q ss_pred             cCCCccccCCCCCceEEEeeccCCcceeeeEEcCCCCeEEEecCCCeEEEE------------------------EcCCC
Q 046394          199 RKDSGDFSGSHNYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGIL------------------------IPGSG  254 (378)
Q Consensus       199 p~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~------------------------~~~s~  254 (378)
                      .+|...+|+.....++..+.+ |...|+++.| |+   |++++.||.+.+|                        ++++.
T Consensus       317 ~~g~i~~~d~~~~~~~~~~~~-~~~~v~~~~~-~~---l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~  391 (615)
T 1pgu_A          317 LDGTLNFYELGHDEVLKTISG-HNKGITALTV-NP---LISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISW  391 (615)
T ss_dssp             TTSCEEEEETTEEEEEEEECC-CSSCEEEEET-TT---TEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEET
T ss_pred             CCCCEEEEECCCCcEEEEEeC-CCCCEEEEEe-cC---cEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeC
Confidence            244457788777777778877 8888999999 87   7888877766544                        35567


Q ss_pred             CcccccccCC
Q 046394          255 EPNFDSWVAN  264 (378)
Q Consensus       255 d~~i~~w~~~  264 (378)
                      |+.+++|+..
T Consensus       392 d~~i~~~~~~  401 (615)
T 1pgu_A          392 DDTLKVNGIT  401 (615)
T ss_dssp             TTEEEETTEE
T ss_pred             CCCEEEEEcc
Confidence            7888888764

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.95  E-value=4.2e-26  Score=219.38  Aligned_cols=243  Identities=14%  Similarity=0.100  Sum_probs=205.8

Q ss_pred             eeEEEeccceeeeeecccc----eeeEEeecCCCC-ceEEEEcC--CCCEEEEEeCCCcEEEEeC-C--------CCeEE
Q 046394           17 KTWRIKQEAIAREVDILSS----RNQYDIMLPELG-PYTLDFTS--SGRYMAAAGCKGYPYFYNR-D--------GTELH   80 (378)
Q Consensus        17 ~~~~~~~~~~i~~~d~~~~----~~~~~l~~~~~~-v~~~~~sp--~g~~l~~~~~dg~i~iwd~-~--------~~~~~   80 (378)
                      +.+.+..++.+.+||+.++    +....+.+|... |.+++|+|  ++++|++|+.||.|++||. +        ...+.
T Consensus        31 ~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~  110 (615)
T 1pgu_A           31 NAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKS  110 (615)
T ss_dssp             TEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEE
T ss_pred             CEEEEecCCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccc
Confidence            3444455889999999999    899999999999 99999999  9999999999999999996 3        35667


Q ss_pred             eeccCCCe-eEEEE-----EEEEEeCC----CeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCC-EEEEEcCCCe----
Q 046394           81 CSKEHGEV-LKLQF-----LLASINKL----GQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNG-VVSLGHSGGT----  145 (378)
Q Consensus        81 ~~~~~~~~-~~l~~-----~l~s~~~d----~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~d~~----  145 (378)
                      .+..|... .+++|     ++++++.+    +.|.+||  +++.+..+..|...|.+++|+|++. .+++++.|+.    
T Consensus       111 ~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vw  188 (615)
T 1pgu_A          111 EFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFY  188 (615)
T ss_dssp             EEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEE
T ss_pred             hhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEE
Confidence            78878776 99999     88888877    6888887  6778889999999999999999998 8999999987    


Q ss_pred             ----------eeecCC---CEEEEEEecC-CCEEEEEECCCeEEEEEcCCceeeeee-------cCCceEEEEecCCCc-
Q 046394          146 ----------MLCHQG---PVSALAFHPN-GHLMATSGKDCKIKIWDLRKYEVLQTL-------PGHAKTLDFSRKDSG-  203 (378)
Q Consensus       146 ----------~~~h~~---~v~~~~~sp~-g~~l~t~~~d~~i~iwd~~~~~~~~~~-------~~~i~~~~~sp~g~~-  203 (378)
                                +.+|..   .|.+++|+|+ +++|++++.|+.|++||+.+++.+..+       ...+.+++|+ ++.+ 
T Consensus       189 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l  267 (615)
T 1pgu_A          189 QGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKF  267 (615)
T ss_dssp             ETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEE
T ss_pred             eCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEE
Confidence                      556888   9999999999 999999999999999999999887766       2578999998 7764 


Q ss_pred             ---------cccCCCCCceEEEeeccC----CcceeeeEEcCCCCeEEEecCCCeEEEE---------------------
Q 046394          204 ---------DFSGSHNYNRYMGYSMVK----GYQIGKVSFRPYEDVLGIGHSMGVSGIL---------------------  249 (378)
Q Consensus       204 ---------~~~~~~~~~~~~~~~~~~----~~~v~~~~~sp~g~~l~~~~~~g~~~~~---------------------  249 (378)
                               .+|+......+..+.. +    ...+.++.|+ ++.+|++++.+|.+.+|                     
T Consensus       268 ~~~~~d~~i~~wd~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~  345 (615)
T 1pgu_A          268 ATVGADATIRVWDVTTSKCVQKWTL-DKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITAL  345 (615)
T ss_dssp             EEEETTSEEEEEETTTTEEEEEEEC-CTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEE
T ss_pred             EEEcCCCcEEEEECCCCcEEEEEcC-CCCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEE
Confidence                     6777777777777665 3    3567888886 88999999999977654                     


Q ss_pred             -----EcCCCCcccccccCC
Q 046394          250 -----IPGSGEPNFDSWVAN  264 (378)
Q Consensus       250 -----~~~s~d~~i~~w~~~  264 (378)
                           ++++.|+.+++|+..
T Consensus       346 ~~~~l~~~~~dg~i~~w~~~  365 (615)
T 1pgu_A          346 TVNPLISGSYDGRIMEWSSS  365 (615)
T ss_dssp             ETTTTEEEETTSCEEETTTT
T ss_pred             EecCcEEECCCCeEEEEEch
Confidence                 456778999999875

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.95  E-value=6.4e-26  Score=207.15  Aligned_cols=205  Identities=19%  Similarity=0.212  Sum_probs=167.8

Q ss_pred             eEEeecCCCCce--EEEEcCCCCEEEEEeCCCcEEEEeC-CCCeEEeecc-CCCe-eEEEE-----EEEEEeCCCeEEEE
Q 046394           38 QYDIMLPELGPY--TLDFTSSGRYMAAAGCKGYPYFYNR-DGTELHCSKE-HGEV-LKLQF-----LLASINKLGQLRYQ  107 (378)
Q Consensus        38 ~~~l~~~~~~v~--~~~~sp~g~~l~~~~~dg~i~iwd~-~~~~~~~~~~-~~~~-~~l~~-----~l~s~~~d~~i~iw  107 (378)
                      ++...+|...++  +++|++  ..+++++.||.|++||. ++.....+.. |... .+++|     +|++++.||.|++|
T Consensus        84 ~~~~~~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw  161 (401)
T 4aez_A           84 VLDAPGIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIY  161 (401)
T ss_dssp             EEECTTCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             eeeCCCCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEE
Confidence            444456655544  566665  45788889999999994 5666666555 5554 99999     99999999999999


Q ss_pred             EcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe---------------eeecCCCEEEEEEecCCCEEEEEECCC
Q 046394          108 NVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT---------------MLCHQGPVSALAFHPNGHLMATSGKDC  172 (378)
Q Consensus       108 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~---------------~~~h~~~v~~~~~sp~g~~l~t~~~d~  172 (378)
                      |+.+++.+..+..|...|.+++|  ++.+|++++.++.               +.+|.+.|.+++|+|++++|++++.|+
T Consensus       162 d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~  239 (401)
T 4aez_A          162 DVESQTKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDN  239 (401)
T ss_dssp             ETTTCCEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             ECcCCeEEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCC
Confidence            99999999999999999999999  5679999999987               667999999999999999999999999


Q ss_pred             eEEEEEcCCceeeeee---cCCceEEEEecCCCc-------------cccCCCCCceEEEeeccCCcceeeeEEcCCCCe
Q 046394          173 KIKIWDLRKYEVLQTL---PGHAKTLDFSRKDSG-------------DFSGSHNYNRYMGYSMVKGYQIGKVSFRPYEDV  236 (378)
Q Consensus       173 ~i~iwd~~~~~~~~~~---~~~i~~~~~sp~g~~-------------~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~  236 (378)
                      .|++||++++.++..+   ...+.+++|+|++..             .+|+.....++..+.  +...|.+++|+|++.+
T Consensus       240 ~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~--~~~~v~~~~~s~~~~~  317 (401)
T 4aez_A          240 VVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD--AGSQVTSLIWSPHSKE  317 (401)
T ss_dssp             CEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE--CSSCEEEEEECSSSSE
T ss_pred             eEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe--CCCcEEEEEECCCCCe
Confidence            9999999999988877   478999999997654             455556666666664  4567999999999999


Q ss_pred             EEE--ecCCCeEEE
Q 046394          237 LGI--GHSMGVSGI  248 (378)
Q Consensus       237 l~~--~~~~g~~~~  248 (378)
                      |++  |+.+|.+.+
T Consensus       318 l~~~~g~~dg~i~v  331 (401)
T 4aez_A          318 IMSTHGFPDNNLSI  331 (401)
T ss_dssp             EEEEECTTTCEEEE
T ss_pred             EEEEeecCCCcEEE
Confidence            988  557876553

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.95  E-value=3.9e-27  Score=231.80  Aligned_cols=213  Identities=13%  Similarity=0.111  Sum_probs=175.6

Q ss_pred             EEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeC---CCCeEEeeccCCCe-eEEEE-------EEEEEeCCCeEEEE
Q 046394           39 YDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNR---DGTELHCSKEHGEV-LKLQF-------LLASINKLGQLRYQ  107 (378)
Q Consensus        39 ~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~---~~~~~~~~~~~~~~-~~l~~-------~l~s~~~d~~i~iw  107 (378)
                      ..+.+|.+.|++++|+|+|++|++|+.||.|+|||.   ++..+..+.+|.+. .+++|       ++++|+.||.|++|
T Consensus         3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vw   82 (753)
T 3jro_A            3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW   82 (753)
T ss_dssp             -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEE
T ss_pred             eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEE
Confidence            457899999999999999999999999999999995   34566788899876 99999       89999999999999


Q ss_pred             EcCCCc--EEEEEecCCCCeeEEEEcCC--CCEEEEEcCCCe----------------eeecCCCEEEEEEec-------
Q 046394          108 NVTMGE--IVGNFWTGLGRTDVIRVNPF--NGVVSLGHSGGT----------------MLCHQGPVSALAFHP-------  160 (378)
Q Consensus       108 d~~~~~--~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~d~~----------------~~~h~~~v~~~~~sp-------  160 (378)
                      |+.+++  .+..+..|...|.+++|+|+  +..+++|+.||.                +.+|...|.+++|+|       
T Consensus        83 d~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~  162 (753)
T 3jro_A           83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG  162 (753)
T ss_dssp             EEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC-----
T ss_pred             ECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccccc
Confidence            999987  67788889999999999999  999999999987                557889999999999       


Q ss_pred             ------CCCEEEEEECCCeEEEEEcCCc----eeeeee---cCCceEEEEecC---CCc----------cccCCCCCc--
Q 046394          161 ------NGHLMATSGKDCKIKIWDLRKY----EVLQTL---PGHAKTLDFSRK---DSG----------DFSGSHNYN--  212 (378)
Q Consensus       161 ------~g~~l~t~~~d~~i~iwd~~~~----~~~~~~---~~~i~~~~~sp~---g~~----------~~~~~~~~~--  212 (378)
                            ++.+|++|+.||.|++||++++    .+...+   ...|++++|+|+   |.+          .+|+.....  
T Consensus       163 ~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~  242 (753)
T 3jro_A          163 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGP  242 (753)
T ss_dssp             ----CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSC
T ss_pred             ccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCc
Confidence                  5899999999999999999886    444555   378999999999   554          455544332  


Q ss_pred             ---eEEEeeccCCcceeeeEEcCCCCeEEEecCCCeEEEEEcC
Q 046394          213 ---RYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILIPG  252 (378)
Q Consensus       213 ---~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~~~  252 (378)
                         ....... |...|++++|+|+|.+|++|+.||.+.+|-..
T Consensus       243 ~~~~~~~~~~-~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~  284 (753)
T 3jro_A          243 WKKTLLKEEK-FPDVLWRASWSLSGNVLALSGGDNKVTLWKEN  284 (753)
T ss_dssp             CBCCBSSSSC-CSSCCCCEEECTTTCCEEEECSSSCEECCBCC
T ss_pred             ceeEEeccCC-CCCceEEEEEcCCCCEEEEEcCCCEEEEEecC
Confidence               2222223 67789999999999999999999988777543

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.95  E-value=1.8e-26  Score=207.46  Aligned_cols=213  Identities=11%  Similarity=0.129  Sum_probs=171.7

Q ss_pred             eecCCCCceEEEEcCC----CCEEEEEeCCCcEEEEeC-CCCeEEeecc-----CCC-eeEEEE---------EEEEEeC
Q 046394           41 IMLPELGPYTLDFTSS----GRYMAAAGCKGYPYFYNR-DGTELHCSKE-----HGE-VLKLQF---------LLASINK  100 (378)
Q Consensus        41 l~~~~~~v~~~~~sp~----g~~l~~~~~dg~i~iwd~-~~~~~~~~~~-----~~~-~~~l~~---------~l~s~~~  100 (378)
                      ..+|...|++++|+|+    ...+++++.++.|++||. ++..+..+..     |.. +.+++|         +|++++.
T Consensus        14 ~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~   93 (366)
T 3k26_A           14 KEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGS   93 (366)
T ss_dssp             ECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEET
T ss_pred             ecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecC
Confidence            4489999999999984    456777777789999994 4666655543     333 488888         5999999


Q ss_pred             CCeEEEEEcCCCcEEEEEecCCCCeeEEEEcC-CCCEEEEEcCCCe--------------e---eecCCCEEEEEEecCC
Q 046394          101 LGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNP-FNGVVSLGHSGGT--------------M---LCHQGPVSALAFHPNG  162 (378)
Q Consensus       101 d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~--------------~---~~h~~~v~~~~~sp~g  162 (378)
                      ||.|++||+.+++.+..+..|...|.+++|+| ++.+|++++.|+.              +   .+|...|.+++|+|++
T Consensus        94 dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  173 (366)
T 3k26_A           94 RGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLG  173 (366)
T ss_dssp             TCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTS
T ss_pred             CCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCC
Confidence            99999999999999999999999999999999 8999999999987              3   5799999999999999


Q ss_pred             CEEEEEECCCeEEEEEcCCceeeeee-------------------------------cCCceEEEEec--------CCCc
Q 046394          163 HLMATSGKDCKIKIWDLRKYEVLQTL-------------------------------PGHAKTLDFSR--------KDSG  203 (378)
Q Consensus       163 ~~l~t~~~d~~i~iwd~~~~~~~~~~-------------------------------~~~i~~~~~sp--------~g~~  203 (378)
                      ++|++++.|+.|++||+++++.+..+                               ...+.+++|++        +|..
T Consensus       174 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i  253 (366)
T 3k26_A          174 EKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWLGDLILSKSCENAI  253 (366)
T ss_dssp             SEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEETTEEEEECSSSEE
T ss_pred             CEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEcCCEEEEEecCCEE
Confidence            99999999999999999987554221                               35678888873        3334


Q ss_pred             cccCCCCCc--------------eEEEeeccCCcceeeeEEcCC--CCeEEEecCCCeEEEEEcCCC
Q 046394          204 DFSGSHNYN--------------RYMGYSMVKGYQIGKVSFRPY--EDVLGIGHSMGVSGILIPGSG  254 (378)
Q Consensus       204 ~~~~~~~~~--------------~~~~~~~~~~~~v~~~~~sp~--g~~l~~~~~~g~~~~~~~~s~  254 (378)
                      .+|+.....              .+..+.. |...|++++|+|+  |.+|++|+.+|.+.+|....+
T Consensus       254 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~  319 (366)
T 3k26_A          254 VCWKPGKMEDDIDKIKPSESNVTILGRFDY-SQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVE  319 (366)
T ss_dssp             EEEEESSTTCCGGGCCTTCCCEEEEEEEEC-SSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSS
T ss_pred             EEEeCCCccccccccccCCcchheeccccc-cCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCC
Confidence            566654432              3556666 7888999999999  999999999888777765443

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.95  E-value=4.4e-26  Score=201.38  Aligned_cols=197  Identities=12%  Similarity=0.084  Sum_probs=160.9

Q ss_pred             ceeeEEEeccceeeeeecccce--eeEEeecCCCCceEEEEcC--CCCEEEEEeCCCcEEEEeCCC---CeEEeeccCCC
Q 046394           15 VEKTWRIKQEAIAREVDILSSR--NQYDIMLPELGPYTLDFTS--SGRYMAAAGCKGYPYFYNRDG---TELHCSKEHGE   87 (378)
Q Consensus        15 ~~~~~~~~~~~~i~~~d~~~~~--~~~~l~~~~~~v~~~~~sp--~g~~l~~~~~dg~i~iwd~~~---~~~~~~~~~~~   87 (378)
                      ....+..+.|+.|++||+.++.  .+..+.+|...|.+++|+|  ++++|++|+.|++|++||...   ..+..+.+|..
T Consensus        25 g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~  104 (316)
T 3bg1_A           25 GTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDS  104 (316)
T ss_dssp             GCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSS
T ss_pred             CCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCC
Confidence            3456677889999999998774  4678899999999999986  489999999999999999543   35667888887


Q ss_pred             e-eEEEE-------EEEEEeCCCeEEEEEcCCCcE---EEEEecCCCCeeEEEEcCC-----------------CCEEEE
Q 046394           88 V-LKLQF-------LLASINKLGQLRYQNVTMGEI---VGNFWTGLGRTDVIRVNPF-----------------NGVVSL  139 (378)
Q Consensus        88 ~-~~l~~-------~l~s~~~d~~i~iwd~~~~~~---~~~~~~~~~~v~~~~~s~~-----------------~~~l~~  139 (378)
                      . .+++|       +|++++.|++|++||+..+..   ...+..|...+.+++|+|+                 +.+|++
T Consensus       105 ~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s  184 (316)
T 3bg1_A          105 SVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFAS  184 (316)
T ss_dssp             CCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEEC
T ss_pred             ceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEE
Confidence            6 99999       799999999999999987632   2345567888999999998                 468999


Q ss_pred             EcCCCe-----------------eeecCCCEEEEEEecCC----CEEEEEECCCeEEEEEcCCc---e----eeeeecCC
Q 046394          140 GHSGGT-----------------MLCHQGPVSALAFHPNG----HLMATSGKDCKIKIWDLRKY---E----VLQTLPGH  191 (378)
Q Consensus       140 ~~~d~~-----------------~~~h~~~v~~~~~sp~g----~~l~t~~~d~~i~iwd~~~~---~----~~~~~~~~  191 (378)
                      |+.|+.                 +.+|...|.+++|+|++    .+|++++.|++|+|||+.+.   .    .+..+...
T Consensus       185 gs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~  264 (316)
T 3bg1_A          185 GGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDV  264 (316)
T ss_dssp             CBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSC
T ss_pred             ecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCc
Confidence            998876                 45689999999999986    89999999999999999762   1    12222578


Q ss_pred             ceEEEEecCCCccccCCCCC
Q 046394          192 AKTLDFSRKDSGDFSGSHNY  211 (378)
Q Consensus       192 i~~~~~sp~g~~~~~~~~~~  211 (378)
                      +.+++|+|+|.+.+....++
T Consensus       265 v~~v~~sp~g~~las~~~D~  284 (316)
T 3bg1_A          265 VWHVSWSITANILAVSGGDN  284 (316)
T ss_dssp             EEEEEECTTTCCEEEEESSS
T ss_pred             EEEEEEcCCCCEEEEEcCCC
Confidence            99999999998766554443

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.95  E-value=3.2e-27  Score=215.11  Aligned_cols=226  Identities=10%  Similarity=-0.026  Sum_probs=156.8

Q ss_pred             eeEEEeccceeeeeecccceee-----EEeecCCCCceEEEEcC--------CCCEEEEEeCCCcEEEEeC-CCCeEEee
Q 046394           17 KTWRIKQEAIAREVDILSSRNQ-----YDIMLPELGPYTLDFTS--------SGRYMAAAGCKGYPYFYNR-DGTELHCS   82 (378)
Q Consensus        17 ~~~~~~~~~~i~~~d~~~~~~~-----~~l~~~~~~v~~~~~sp--------~g~~l~~~~~dg~i~iwd~-~~~~~~~~   82 (378)
                      .......|++|++||+.++...     ..+.+|.+.|++++|+|        ||++||+|+.|++|+|||+ ++.++..+
T Consensus       103 ~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~  182 (393)
T 4gq1_A          103 FLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAG  182 (393)
T ss_dssp             EEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEE
T ss_pred             EEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeee
Confidence            3556677999999999888653     23678999999999998        8899999999999999994 56666666


Q ss_pred             ccCCCe-eEEEE------EEEEEeCCCeEEEEEcCCCcEEEEEecCCCC----eeEEEEcCCCCEEEEEcCCCeeeecCC
Q 046394           83 KEHGEV-LKLQF------LLASINKLGQLRYQNVTMGEIVGNFWTGLGR----TDVIRVNPFNGVVSLGHSGGTMLCHQG  151 (378)
Q Consensus        83 ~~~~~~-~~l~~------~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~----v~~~~~s~~~~~l~~~~~d~~~~~h~~  151 (378)
                      ..|... .+++|      +|++++.|++|++||+.+++.......+...    +....+.+......       ..+|..
T Consensus       183 ~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~-------~~~~~~  255 (393)
T 4gq1_A          183 YPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCH-------SSGIAS  255 (393)
T ss_dssp             EECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC-------------CCSS
T ss_pred             cCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeee-------cccccc
Confidence            666654 99999      7999999999999999998876655433222    22222222221111       247888


Q ss_pred             CEEEEEEe-cCCCEEEEEECCCeEEEEEcCCceeeeee---cCCc------------------eEEEE------------
Q 046394          152 PVSALAFH-PNGHLMATSGKDCKIKIWDLRKYEVLQTL---PGHA------------------KTLDF------------  197 (378)
Q Consensus       152 ~v~~~~~s-p~g~~l~t~~~d~~i~iwd~~~~~~~~~~---~~~i------------------~~~~~------------  197 (378)
                      .|.++.|+ |+|..|++++.|+++++||+.++.....+   ...+                  ....|            
T Consensus       256 ~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg  335 (393)
T 4gq1_A          256 SLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAH  335 (393)
T ss_dssp             SCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEE
T ss_pred             cceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEE
Confidence            99999997 69999999999999999999876654443   0111                  11122            


Q ss_pred             ecCCCccccCCCCCceEEEeeccCCcceeeeEEcCCCCeEEEecCCCeEEEEE
Q 046394          198 SRKDSGDFSGSHNYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILI  250 (378)
Q Consensus       198 sp~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~  250 (378)
                      +.||...+|+...+........ |..+|.+|+|+|||++||+++++|+..+-+
T Consensus       336 s~Dg~V~lwd~~~~~~~~~~~~-~~~~V~svafspdG~~LA~as~~Gv~lvrL  387 (393)
T 4gq1_A          336 SQHGLIQLINTYEKDSNSIPIQ-LGMPIVDFCWHQDGSHLAIATEGSVLLTRL  387 (393)
T ss_dssp             TTTTEEEEEETTCTTCCEEEEE-CSSCEEEEEECTTSSEEEEEESSEEEEEEE
T ss_pred             CCCCEEEEEECCCCcEEEEecC-CCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence            3355568888887777777666 788999999999999999999998655444

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.95  E-value=2.4e-26  Score=205.97  Aligned_cols=213  Identities=15%  Similarity=0.106  Sum_probs=166.2

Q ss_pred             EEeecCCCCceEEEEcCCCCEE-EEEeC---CCcEEEEeCC-CCeEEe-eccCCCe-eEEEE--------EEEEEeCCCe
Q 046394           39 YDIMLPELGPYTLDFTSSGRYM-AAAGC---KGYPYFYNRD-GTELHC-SKEHGEV-LKLQF--------LLASINKLGQ  103 (378)
Q Consensus        39 ~~l~~~~~~v~~~~~sp~g~~l-~~~~~---dg~i~iwd~~-~~~~~~-~~~~~~~-~~l~~--------~l~s~~~d~~  103 (378)
                      ..+.+|...|.+++|+|++..+ ++|+.   ||.|++||.. +..... ..+|... .+++|        ++++++.|+.
T Consensus        12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~   91 (357)
T 3i2n_A           12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGN   91 (357)
T ss_dssp             EEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSC
T ss_pred             hhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCe
Confidence            3457799999999999999655 55655   8999999954 443322 2356554 89988        5999999999


Q ss_pred             EEEEEcCCCc-EEEEEecCCCCeeEEE------EcCCCCEEEEEcCCCe---------------eeecCC----CEEEEE
Q 046394          104 LRYQNVTMGE-IVGNFWTGLGRTDVIR------VNPFNGVVSLGHSGGT---------------MLCHQG----PVSALA  157 (378)
Q Consensus       104 i~iwd~~~~~-~~~~~~~~~~~v~~~~------~s~~~~~l~~~~~d~~---------------~~~h~~----~v~~~~  157 (378)
                      |++||+.+++ .+..+..|...|.++.      |+|++.+|++++.|+.               +..|.+    .|.+++
T Consensus        92 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~  171 (357)
T 3i2n_A           92 LHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVA  171 (357)
T ss_dssp             EEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEE
T ss_pred             EEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEE
Confidence            9999999988 8888999999999995      5789999999999987               223333    788888


Q ss_pred             ----EecCCCEEEEEECCCeEEEEEcCCceeeeee--cCCceEEEEec---CCCc----------cccCCCCCceEEEe-
Q 046394          158 ----FHPNGHLMATSGKDCKIKIWDLRKYEVLQTL--PGHAKTLDFSR---KDSG----------DFSGSHNYNRYMGY-  217 (378)
Q Consensus       158 ----~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~--~~~i~~~~~sp---~g~~----------~~~~~~~~~~~~~~-  217 (378)
                          |+|++++|++++.|+.|++||+++++.....  ...+.+++|+|   ++.+          .+|+.....+...+ 
T Consensus       172 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  251 (357)
T 3i2n_A          172 FGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFA  251 (357)
T ss_dssp             EECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEE
T ss_pred             EEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCccccee
Confidence                7889999999999999999999999886666  57899999999   7765          44544333332222 


Q ss_pred             ----eccCCcceeeeEEcCCCC-eEEEecCCCeEEEEEcC
Q 046394          218 ----SMVKGYQIGKVSFRPYED-VLGIGHSMGVSGILIPG  252 (378)
Q Consensus       218 ----~~~~~~~v~~~~~sp~g~-~l~~~~~~g~~~~~~~~  252 (378)
                          .+ |...|++++|+|++. +|++++.||.+.+|...
T Consensus       252 ~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~  290 (357)
T 3i2n_A          252 SVSEKA-HKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYE  290 (357)
T ss_dssp             EEEEEC-CSSCEEEEEEETTEEEEEEEEETTSEEEEEEEE
T ss_pred             eeccCC-CcCCEEEEEECCCCCcEEEEEeCCCcEEEeecC
Confidence                25 888999999999998 78888888887777543

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.95  E-value=7.1e-26  Score=202.44  Aligned_cols=235  Identities=11%  Similarity=0.028  Sum_probs=179.0

Q ss_pred             eeeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCC----------CeEEeec-c
Q 046394           16 EKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDG----------TELHCSK-E   84 (378)
Q Consensus        16 ~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~----------~~~~~~~-~   84 (378)
                      ...+....|+.|++||+.+++.+..+.  ...|.++.|+|+   +++|+.|+.|++|+..+          ..+..+. .
T Consensus        49 ~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~  123 (343)
T 3lrv_A           49 WVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVD  123 (343)
T ss_dssp             EEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECC
T ss_pred             CEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEeecC
Confidence            446677889999999999999888877  367888999998   99999999999997543          2233333 4


Q ss_pred             CCC-eeEEEE-------EEEEEeCCCeEEEEEcCCCcEEEEEec-CCCCeeEEEEcCCCCEEEEEcCCCe----------
Q 046394           85 HGE-VLKLQF-------LLASINKLGQLRYQNVTMGEIVGNFWT-GLGRTDVIRVNPFNGVVSLGHSGGT----------  145 (378)
Q Consensus        85 ~~~-~~~l~~-------~l~s~~~d~~i~iwd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~d~~----------  145 (378)
                      |.+ +.+++|       ++++++.|++|++||+.+++.+..+.. +...+.+++|+|++.+|++|+.|+.          
T Consensus       124 ~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~  203 (343)
T 3lrv_A          124 SANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPD  203 (343)
T ss_dssp             CSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTT
T ss_pred             CCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCC
Confidence            444 488887       799999999999999999998776643 4557999999999999999999987          


Q ss_pred             -----eee-cCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee-c-----CCc--eEEEEecCCCccccCCCCC
Q 046394          146 -----MLC-HQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL-P-----GHA--KTLDFSRKDSGDFSGSHNY  211 (378)
Q Consensus       146 -----~~~-h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~-~-----~~i--~~~~~sp~g~~~~~~~~~~  211 (378)
                           +.. |.++|++++|+|+|.+|++++ |+.|++||++++..+..+ .     ..+  .+++|+|+|.+.+......
T Consensus       204 ~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d  282 (343)
T 3lrv_A          204 QASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNES  282 (343)
T ss_dssp             SCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTT
T ss_pred             CCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCC
Confidence                 445 899999999999999999999 559999999998776554 1     233  3699999999877633312


Q ss_pred             ceEEEeeccCC------cceeeeEEcC---CCCeEEEecCCCeEEEEEcCCCCc
Q 046394          212 NRYMGYSMVKG------YQIGKVSFRP---YEDVLGIGHSMGVSGILIPGSGEP  256 (378)
Q Consensus       212 ~~~~~~~~~~~------~~v~~~~~sp---~g~~l~~~~~~g~~~~~~~~s~d~  256 (378)
                      ..+..+.....      .++..+.|+|   ++..|++++.+|.+.+++..+.+.
T Consensus       283 ~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~  336 (343)
T 3lrv_A          283 NSLTIYKFDKKTKNWTKDEESALCLQSDTADFTDMDVVCGDGGIAAILKTNDSF  336 (343)
T ss_dssp             TEEEEEEECTTTCSEEEEEEEECCC----CCCCEEEEEEETTEEEEEEECSSEE
T ss_pred             CcEEEEEEcccccceEecCceeEecCccccccceeEEEecCCceEEEEecCCeE
Confidence            22333321011      3456789999   889999999999888777554443

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.95  E-value=2.2e-25  Score=195.13  Aligned_cols=196  Identities=12%  Similarity=0.104  Sum_probs=161.1

Q ss_pred             ceeeEEEeccceeeeeeccc--ceeeEEeecCCCCceEEEEcCC--CCEEEEEeCCCcEEEEeCCC---CeEEeeccCCC
Q 046394           15 VEKTWRIKQEAIAREVDILS--SRNQYDIMLPELGPYTLDFTSS--GRYMAAAGCKGYPYFYNRDG---TELHCSKEHGE   87 (378)
Q Consensus        15 ~~~~~~~~~~~~i~~~d~~~--~~~~~~l~~~~~~v~~~~~sp~--g~~l~~~~~dg~i~iwd~~~---~~~~~~~~~~~   87 (378)
                      ....+..+.|+.|++||+.+  .+.+..+.+|...|.+++|+|+  +++|++|+.||+|+|||...   ..+..+.+|..
T Consensus        21 g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~  100 (297)
T 2pm7_B           21 GKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSA  100 (297)
T ss_dssp             SSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSS
T ss_pred             CCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCC
Confidence            45667778899999999974  4677889999999999999864  89999999999999999543   24566777876


Q ss_pred             e-eEEEE-------EEEEEeCCCeEEEEEcCCCc--EEEEEecCCCCeeEEEEcCC-------------CCEEEEEcCCC
Q 046394           88 V-LKLQF-------LLASINKLGQLRYQNVTMGE--IVGNFWTGLGRTDVIRVNPF-------------NGVVSLGHSGG  144 (378)
Q Consensus        88 ~-~~l~~-------~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~v~~~~~s~~-------------~~~l~~~~~d~  144 (378)
                      . .+++|       +|++++.|++|++||+.++.  ....+..|...|.+++|+|+             +.+|++|+.|+
T Consensus       101 ~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~  180 (297)
T 2pm7_B          101 SVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADN  180 (297)
T ss_dssp             CEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTS
T ss_pred             ceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCC
Confidence            5 99999       79999999999999998763  24567789999999999997             57999999998


Q ss_pred             e------------------eeecCCCEEEEEEecCC---CEEEEEECCCeEEEEEcCCce--e-eeee-----cCCceEE
Q 046394          145 T------------------MLCHQGPVSALAFHPNG---HLMATSGKDCKIKIWDLRKYE--V-LQTL-----PGHAKTL  195 (378)
Q Consensus       145 ~------------------~~~h~~~v~~~~~sp~g---~~l~t~~~d~~i~iwd~~~~~--~-~~~~-----~~~i~~~  195 (378)
                      .                  +.+|...|.+++|+|++   .+|++++.|++|+|||+.+..  . ...+     ...+.++
T Consensus       181 ~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~  260 (297)
T 2pm7_B          181 LVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRA  260 (297)
T ss_dssp             CEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEE
T ss_pred             cEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEE
Confidence            6                  45799999999999984   899999999999999998742  1 1111     4678999


Q ss_pred             EEecCCCccccCCCC
Q 046394          196 DFSRKDSGDFSGSHN  210 (378)
Q Consensus       196 ~~sp~g~~~~~~~~~  210 (378)
                      +|+|+|.+.+....+
T Consensus       261 ~~s~~g~~las~~~D  275 (297)
T 2pm7_B          261 SWSLSGNVLALSGGD  275 (297)
T ss_dssp             EECSSSCCEEEEETT
T ss_pred             EECCCCCEEEEEcCC
Confidence            999999876554433

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.95  E-value=5.6e-25  Score=203.09  Aligned_cols=199  Identities=14%  Similarity=0.183  Sum_probs=174.2

Q ss_pred             ecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeeccCCCe-eEEEE---EEEEEeCCCeEEEEEcCCCcEEE
Q 046394           42 MLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKEHGEV-LKLQF---LLASINKLGQLRYQNVTMGEIVG  116 (378)
Q Consensus        42 ~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~-~~l~~---~l~s~~~d~~i~iwd~~~~~~~~  116 (378)
                      ..|...|+++.|  ++++|++|+.||.|++|| .++..+..+.+|.+. .+++|   ++++|+.||+|++||+.+++.+.
T Consensus       130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~  207 (435)
T 1p22_A          130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLN  207 (435)
T ss_dssp             CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEESSSCCEEE
T ss_pred             cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEECCCEEEEEcCCCeEEEEECCCCcEEE
Confidence            345567888876  789999999999999999 567888889999876 99999   99999999999999999999999


Q ss_pred             EEecCCCCeeEEEEcCCCCEEEEEcCCCe-----------------eeecCCCEEEEEEecCCCEEEEEECCCeEEEEEc
Q 046394          117 NFWTGLGRTDVIRVNPFNGVVSLGHSGGT-----------------MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDL  179 (378)
Q Consensus       117 ~~~~~~~~v~~~~~s~~~~~l~~~~~d~~-----------------~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~  179 (378)
                      .+..|...|.+++|++  ..+++++.|+.                 +.+|...|.+++|  ++++|++++.||.|++||+
T Consensus       208 ~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~  283 (435)
T 1p22_A          208 TLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNT  283 (435)
T ss_dssp             EECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEET
T ss_pred             EEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEEC
Confidence            9999999999999974  59999999887                 4578899999999  6789999999999999999


Q ss_pred             CCceeeeee---cCCceEEEEec--------CCCccccCCCCCceEEEeeccCCcceeeeEEcCCCCeEEEecCCCeEEE
Q 046394          180 RKYEVLQTL---PGHAKTLDFSR--------KDSGDFSGSHNYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGI  248 (378)
Q Consensus       180 ~~~~~~~~~---~~~i~~~~~sp--------~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~  248 (378)
                      ++++++..+   ...+.++.|++        ||...+|+..+..++..+.+ |...|.++.|  ++.+|++|+.||.+.+
T Consensus       284 ~~~~~~~~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~-h~~~v~~~~~--~~~~l~sg~~dg~i~v  360 (435)
T 1p22_A          284 STCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEG-HEELVRCIRF--DNKRIVSGAYDGKIKV  360 (435)
T ss_dssp             TTCCEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECC-CSSCEEEEEC--CSSEEEEEETTSCEEE
T ss_pred             CcCcEEEEEcCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCCCCEEEEEeC-CcCcEEEEEe--cCCEEEEEeCCCcEEE
Confidence            999998888   36788887754        56678999988888888888 8899999999  7889999999987765


Q ss_pred             E
Q 046394          249 L  249 (378)
Q Consensus       249 ~  249 (378)
                      |
T Consensus       361 w  361 (435)
T 1p22_A          361 W  361 (435)
T ss_dssp             E
T ss_pred             E
Confidence            4

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.94  E-value=6.5e-26  Score=209.31  Aligned_cols=203  Identities=13%  Similarity=0.085  Sum_probs=158.0

Q ss_pred             eeecccceeeEEe-ecCCCCceEEEEcC-CCCEEEEEeCCCcEEEEeCC----CC---eEEeeccCCCe-eEEEE-----
Q 046394           29 EVDILSSRNQYDI-MLPELGPYTLDFTS-SGRYMAAAGCKGYPYFYNRD----GT---ELHCSKEHGEV-LKLQF-----   93 (378)
Q Consensus        29 ~~d~~~~~~~~~l-~~~~~~v~~~~~sp-~g~~l~~~~~dg~i~iwd~~----~~---~~~~~~~~~~~-~~l~~-----   93 (378)
                      .|+ .+++.+..+ .+|...|++++|+| ++.+|++|+.||.|+|||..    +.   ....+ .|... .+++|     
T Consensus        47 ~w~-~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~  124 (437)
T 3gre_A           47 MGN-LRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFD  124 (437)
T ss_dssp             GGG-CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSS
T ss_pred             ccc-ccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCC
Confidence            477 467778888 88999999999999 99999999999999999942    22   12333 46654 99999     


Q ss_pred             EEEEEeCCCeEEEEEcC---CCcEEEEEec------------CCCCeeEEE--EcCCCCEEEEEcCCCe-----------
Q 046394           94 LLASINKLGQLRYQNVT---MGEIVGNFWT------------GLGRTDVIR--VNPFNGVVSLGHSGGT-----------  145 (378)
Q Consensus        94 ~l~s~~~d~~i~iwd~~---~~~~~~~~~~------------~~~~v~~~~--~s~~~~~l~~~~~d~~-----------  145 (378)
                      +|++++.|++|++||+.   +++.+..+..            +...+.++.  +++++.+|++++.|+.           
T Consensus       125 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~  204 (437)
T 3gre_A          125 AFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLER  204 (437)
T ss_dssp             EEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCE
T ss_pred             EEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCee
Confidence            89999999999999995   5554443321            345566666  6688999999999998           


Q ss_pred             ---eee--cCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee----cCCceEEEEecC----CC----------
Q 046394          146 ---MLC--HQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL----PGHAKTLDFSRK----DS----------  202 (378)
Q Consensus       146 ---~~~--h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~----~~~i~~~~~sp~----g~----------  202 (378)
                         +.+  |.+.|++++|+|++++|++++.||+|++||+++++++.++    +..|.+++|+|.    +.          
T Consensus       205 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~  284 (437)
T 3gre_A          205 LQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTF  284 (437)
T ss_dssp             EEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEE
T ss_pred             eEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCc
Confidence               445  8899999999999999999999999999999999998876    357889977653    32          


Q ss_pred             ccccCCCCCceEEEeeccCCcceeeeEEcCCC
Q 046394          203 GDFSGSHNYNRYMGYSMVKGYQIGKVSFRPYE  234 (378)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g  234 (378)
                      ..+|+......+..+.+ |...+..+.|+|++
T Consensus       285 i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~  315 (437)
T 3gre_A          285 LTIWNFVKGHCQYAFIN-SDEQPSMEHFLPIE  315 (437)
T ss_dssp             EEEEETTTTEEEEEEES-SSSCCCGGGGSCBC
T ss_pred             EEEEEcCCCcEEEEEEc-CCCCCccceecccc
Confidence            47788877777777765 44444444454443

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.94  E-value=4.3e-25  Score=220.55  Aligned_cols=232  Identities=10%  Similarity=0.078  Sum_probs=166.8

Q ss_pred             eeeEEEeccceeeeeecccceeeEEeecC------------------CCCceEEEEcCCCCEEEEEeCCCcEEEEeC-CC
Q 046394           16 EKTWRIKQEAIAREVDILSSRNQYDIMLP------------------ELGPYTLDFTSSGRYMAAAGCKGYPYFYNR-DG   76 (378)
Q Consensus        16 ~~~~~~~~~~~i~~~d~~~~~~~~~l~~~------------------~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~-~~   76 (378)
                      ...+....++.+ +||+.+++....+..|                  ...|.+++|+|+|.+|++|+.||.|++||. ++
T Consensus       165 ~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g  243 (902)
T 2oaj_A          165 GTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSG  243 (902)
T ss_dssp             EEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTC
T ss_pred             CEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC
Confidence            455666778999 9999999988888766                  467999999999999999999999999995 55


Q ss_pred             CeEEe--ec---cC-------------CC-eeEEEE----------EEEEEeC---------------------------
Q 046394           77 TELHC--SK---EH-------------GE-VLKLQF----------LLASINK---------------------------  100 (378)
Q Consensus        77 ~~~~~--~~---~~-------------~~-~~~l~~----------~l~s~~~---------------------------  100 (378)
                      .++..  +.   .|             .. +.+++|          ++++|+.                           
T Consensus       244 ~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~  323 (902)
T 2oaj_A          244 HMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEG  323 (902)
T ss_dssp             CEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHH
T ss_pred             cEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhh
Confidence            55442  21   12             22 255555          3444433                           


Q ss_pred             -------------------------------------------------CCeEEEEEcCCCcEEEE--------------
Q 046394          101 -------------------------------------------------LGQLRYQNVTMGEIVGN--------------  117 (378)
Q Consensus       101 -------------------------------------------------d~~i~iwd~~~~~~~~~--------------  117 (378)
                                                                       |+.|++||+.++.....              
T Consensus       324 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~  403 (902)
T 2oaj_A          324 MKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPL  403 (902)
T ss_dssp             HHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTB
T ss_pred             hhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCC
Confidence                                                             34445555444322111              


Q ss_pred             ---------------------------EecCCCCeeEEEEcCCCCEEEEEcCCCe----------e--------------
Q 046394          118 ---------------------------FWTGLGRTDVIRVNPFNGVVSLGHSGGT----------M--------------  146 (378)
Q Consensus       118 ---------------------------~~~~~~~v~~~~~s~~~~~l~~~~~d~~----------~--------------  146 (378)
                                                 +.+|...+..++|+|++++|++|+.|+.          +              
T Consensus       404 v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~  483 (902)
T 2oaj_A          404 ATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTL  483 (902)
T ss_dssp             EEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHT
T ss_pred             eeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhc
Confidence                                       1112223344566899999999999998          1              


Q ss_pred             -eecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCce------------------------------------------
Q 046394          147 -LCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYE------------------------------------------  183 (378)
Q Consensus       147 -~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~------------------------------------------  183 (378)
                       .+|...|.+++|+|+|++||+|+.||+|+|||+.+++                                          
T Consensus       484 ~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  563 (902)
T 2oaj_A          484 NKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQ  563 (902)
T ss_dssp             TCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSE
T ss_pred             CCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCC
Confidence             0688899999999999999999999999999997652                                          


Q ss_pred             ---eeeee---cCCceEEEEecCCCc----------cccCCCCCceEE-----Eee-ccCCcceeeeEEc-----CCC--
Q 046394          184 ---VLQTL---PGHAKTLDFSRKDSG----------DFSGSHNYNRYM-----GYS-MVKGYQIGKVSFR-----PYE--  234 (378)
Q Consensus       184 ---~~~~~---~~~i~~~~~sp~g~~----------~~~~~~~~~~~~-----~~~-~~~~~~v~~~~~s-----p~g--  234 (378)
                         ++..+   .+.|++++||||| +          .+|+......+.     .+. + |...|++|+|+     |||  
T Consensus       564 g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~g-h~~~V~sv~Fs~~~~~~Dg~~  641 (902)
T 2oaj_A          564 GFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGA-QSACVTCIEFVIMEYGDDGYS  641 (902)
T ss_dssp             EEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSS-CCCCEEEEEEEEEECTTSSSE
T ss_pred             ccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccc-cccceEEEEEEEEecCCCCCc
Confidence               34555   4789999999999 5          567765555443     222 5 78889999999     885  


Q ss_pred             -CeEEEecCCCeEEEEE
Q 046394          235 -DVLGIGHSMGVSGILI  250 (378)
Q Consensus       235 -~~l~~~~~~g~~~~~~  250 (378)
                       .+|++|+.||.+.+|.
T Consensus       642 ~~~l~sgs~D~tv~~wd  658 (902)
T 2oaj_A          642 SILMVCGTDMGEVITYK  658 (902)
T ss_dssp             EEEEEEEETTSEEEEEE
T ss_pred             ceEEEEEecCCcEEEEE
Confidence             6777777777666664

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.94  E-value=1.1e-23  Score=191.26  Aligned_cols=230  Identities=9%  Similarity=0.070  Sum_probs=181.7

Q ss_pred             EEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEE-EEEeCCCcEEEEeC-CCCeEEeeccCCCeeEEEE----
Q 046394           20 RIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYM-AAAGCKGYPYFYNR-DGTELHCSKEHGEVLKLQF----   93 (378)
Q Consensus        20 ~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l-~~~~~dg~i~iwd~-~~~~~~~~~~~~~~~~l~~----   93 (378)
                      ....++.|++||+.+++....+..| ..+.+++|+|+|++| ++++.|+.|++||. ++..+..+..+..+.+++|    
T Consensus         7 s~~~d~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~spdg   85 (391)
T 1l0q_A            7 ANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDG   85 (391)
T ss_dssp             EETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEECTTS
T ss_pred             EcCCCCEEEEEECCCCeEEEEeecC-CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCCCccceEECCCC
Confidence            3456789999999999999888887 568999999999977 56668999999995 6777777877777799999    


Q ss_pred             --EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEE-EEEcCCCe-------------eeecCCCEEEEE
Q 046394           94 --LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVV-SLGHSGGT-------------MLCHQGPVSALA  157 (378)
Q Consensus        94 --~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~d~~-------------~~~h~~~v~~~~  157 (378)
                        ++++++.++.|++||+.+++.+..+..+ ..+.+++|+|+++.+ ++++.++.             ...+...+.+++
T Consensus        86 ~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~  164 (391)
T 1l0q_A           86 KQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIA  164 (391)
T ss_dssp             SEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEE
T ss_pred             CEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCCCcceEE
Confidence              4456667899999999999988887654 578999999999977 67776776             222345679999


Q ss_pred             EecCCCEE-EEEECCCeEEEEEcCCceeeeee--cCCceEEEEecCCCc-------------cccCCCCCceEEEeeccC
Q 046394          158 FHPNGHLM-ATSGKDCKIKIWDLRKYEVLQTL--PGHAKTLDFSRKDSG-------------DFSGSHNYNRYMGYSMVK  221 (378)
Q Consensus       158 ~sp~g~~l-~t~~~d~~i~iwd~~~~~~~~~~--~~~i~~~~~sp~g~~-------------~~~~~~~~~~~~~~~~~~  221 (378)
                      |+|+|+++ ++++.|+.|++||+++++++..+  +..+.+++|+|+|.+             .+|+......+..+.. +
T Consensus       165 ~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~  243 (391)
T 1l0q_A          165 VTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPV-G  243 (391)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEEC-C
T ss_pred             ECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEec-C
Confidence            99999887 57778999999999999988877  567899999999875             3444455555555554 3


Q ss_pred             CcceeeeEEcCCCCeE-EEecCCCeEEEEEcCC
Q 046394          222 GYQIGKVSFRPYEDVL-GIGHSMGVSGILIPGS  253 (378)
Q Consensus       222 ~~~v~~~~~sp~g~~l-~~~~~~g~~~~~~~~s  253 (378)
                       ..+.++.|+|+|++| ++++.++.+.+|...+
T Consensus       244 -~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~  275 (391)
T 1l0q_A          244 -PDPAGIAVTPDGKKVYVALSFXNTVSVIDTAT  275 (391)
T ss_dssp             -SSEEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred             -CCccEEEEccCCCEEEEEcCCCCEEEEEECCC
Confidence             347899999999876 5667777777665443

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.94  E-value=2.9e-24  Score=195.50  Aligned_cols=213  Identities=12%  Similarity=0.081  Sum_probs=173.8

Q ss_pred             eeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCC-C------eEEeeccCCCe-eEEEE--E----------EE
Q 046394           37 NQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDG-T------ELHCSKEHGEV-LKLQF--L----------LA   96 (378)
Q Consensus        37 ~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~-~------~~~~~~~~~~~-~~l~~--~----------l~   96 (378)
                      ....+.+|...|++++|+|  ++|++|+.||.|++||... .      .+..+.+|... .+++|  -          |+
T Consensus         8 ~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~   85 (397)
T 1sq9_A            8 TANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVA   85 (397)
T ss_dssp             EEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEE
T ss_pred             hhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEE
Confidence            3456788999999999999  7999999999999999544 3      47888888865 77766  3          78


Q ss_pred             EEeCCCeEEEEEcCCCcE-----EEEEecC-----CCCeeEEEEc----CCCCE-EEEEcCCCe-----e----------
Q 046394           97 SINKLGQLRYQNVTMGEI-----VGNFWTG-----LGRTDVIRVN----PFNGV-VSLGHSGGT-----M----------  146 (378)
Q Consensus        97 s~~~d~~i~iwd~~~~~~-----~~~~~~~-----~~~v~~~~~s----~~~~~-l~~~~~d~~-----~----------  146 (378)
                      +++.|+.|++||+.+++.     +..+..+     ...|.+++|+    |++.+ |++++.++.     +          
T Consensus        86 s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  165 (397)
T 1sq9_A           86 TTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSL  165 (397)
T ss_dssp             EEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHT
T ss_pred             EEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccc
Confidence            899999999999998886     8888888     4899999999    99999 999998886     1          


Q ss_pred             -----------------eecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee-c--------CCceEEEEecC
Q 046394          147 -----------------LCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL-P--------GHAKTLDFSRK  200 (378)
Q Consensus       147 -----------------~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~-~--------~~i~~~~~sp~  200 (378)
                                       ..|...|.+++|+|++ +|++++.|+.|++||+++++++..+ .        ..+.+++|+|+
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~  244 (397)
T 1sq9_A          166 TLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQ  244 (397)
T ss_dssp             TTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSS
T ss_pred             eeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCC
Confidence                             1267789999999999 9999999999999999999888776 2        35899999998


Q ss_pred             CCc-------------cccCCCCCceEEEeecc------------CCcceeeeEEcCCCCeEEEecCCCeEEEEEcC
Q 046394          201 DSG-------------DFSGSHNYNRYMGYSMV------------KGYQIGKVSFRPYEDVLGIGHSMGVSGILIPG  252 (378)
Q Consensus       201 g~~-------------~~~~~~~~~~~~~~~~~------------~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~~~  252 (378)
                      +.+             .+|+.....++..+...            |...|.+++|+|++.+|++++.||.+.+|...
T Consensus       245 ~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  321 (397)
T 1sq9_A          245 GSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVK  321 (397)
T ss_dssp             TTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETT
T ss_pred             CCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcC
Confidence            764             45666666666666542            67789999999999999998888877777543

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.94  E-value=8.8e-25  Score=199.29  Aligned_cols=215  Identities=18%  Similarity=0.234  Sum_probs=167.7

Q ss_pred             ccceeeeeecccceeeEEeecCCCCceEEEEcC-CCCEEEEEeCCCcEEEEeCCC-CeEEee-------------ccCCC
Q 046394           23 QEAIAREVDILSSRNQYDIMLPELGPYTLDFTS-SGRYMAAAGCKGYPYFYNRDG-TELHCS-------------KEHGE   87 (378)
Q Consensus        23 ~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp-~g~~l~~~~~dg~i~iwd~~~-~~~~~~-------------~~~~~   87 (378)
                      .+..+++|++.++.....+.+|...|.+++|+| ++++|++|+.||.|++||... .....+             .+|..
T Consensus        21 ~~~~~~v~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (408)
T 4a11_B           21 AESTRRVLGLELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRY  100 (408)
T ss_dssp             HHHHHHHHTEEECTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSS
T ss_pred             ccCcceeeccccCcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCC
Confidence            456788999999998899999999999999999 999999999999999999543 222222             24665


Q ss_pred             e-eEEEE------EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCC---CEEEEEcCCCe------------
Q 046394           88 V-LKLQF------LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFN---GVVSLGHSGGT------------  145 (378)
Q Consensus        88 ~-~~l~~------~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~---~~l~~~~~d~~------------  145 (378)
                      . .+++|      +|++++.|+.|++||+.+++.+..+. +...+.++.|+|.+   .++++++.++.            
T Consensus       101 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~  179 (408)
T 4a11_B          101 SVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCS  179 (408)
T ss_dssp             CEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCC
T ss_pred             cEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCccee
Confidence            5 99999      89999999999999999999888876 67889999999955   49999998887            


Q ss_pred             --eeecCCCEEEEEEecCCC-EEEEEECCCeEEEEEcCCce-eeeeecCCceEEEEecCCCccccCCCCCceEEEeeccC
Q 046394          146 --MLCHQGPVSALAFHPNGH-LMATSGKDCKIKIWDLRKYE-VLQTLPGHAKTLDFSRKDSGDFSGSHNYNRYMGYSMVK  221 (378)
Q Consensus       146 --~~~h~~~v~~~~~sp~g~-~l~t~~~d~~i~iwd~~~~~-~~~~~~~~i~~~~~sp~g~~~~~~~~~~~~~~~~~~~~  221 (378)
                        +.+|...|.+++|+|++. +|++++.||.|++||++++. ++..+...        .+      ............ |
T Consensus       180 ~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~--------~~------~~~~~~~~~~~~-~  244 (408)
T 4a11_B          180 HILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQH--------NG------KKSQAVESANTA-H  244 (408)
T ss_dssp             EEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTT--------TT------CSCCCTTTSSCS-C
T ss_pred             eeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCccccccccc--------cc------ccceeecccccc-c
Confidence              667999999999999998 58999999999999998865 33332100        00      000111112223 6


Q ss_pred             CcceeeeEEcCCCCeEEEecCCCeEEEEEcCC
Q 046394          222 GYQIGKVSFRPYEDVLGIGHSMGVSGILIPGS  253 (378)
Q Consensus       222 ~~~v~~~~~sp~g~~l~~~~~~g~~~~~~~~s  253 (378)
                      ...|++++|+|+|.+|++++.||.+.+|....
T Consensus       245 ~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~  276 (408)
T 4a11_B          245 NGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSN  276 (408)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             cCceeEEEEcCCCCEEEEecCCCeEEEEECCC
Confidence            67788888998888888888888887776443

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.93  E-value=5e-24  Score=194.60  Aligned_cols=194  Identities=11%  Similarity=0.133  Sum_probs=164.7

Q ss_pred             CceeeEEEeccceeeeeecccc-------eeeEEeecCCCCceEEEEcCCC-CEEEEEeCCCcEEEEe-CCCCeEEee--
Q 046394           14 GVEKTWRIKQEAIAREVDILSS-------RNQYDIMLPELGPYTLDFTSSG-RYMAAAGCKGYPYFYN-RDGTELHCS--   82 (378)
Q Consensus        14 ~~~~~~~~~~~~~i~~~d~~~~-------~~~~~l~~~~~~v~~~~~sp~g-~~l~~~~~dg~i~iwd-~~~~~~~~~--   82 (378)
                      +....+....|+.|++||+.++       ..+..+.+|...|.+++|+|++ ++|++|+.||.|++|| .++..+..+  
T Consensus        93 ~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  172 (402)
T 2aq5_A           93 NDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGP  172 (402)
T ss_dssp             CTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECT
T ss_pred             CCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEec
Confidence            3445666777899999999988       6688899999999999999998 6999999999999999 566777788  


Q ss_pred             ccCCCe-eEEEE-----EEEEEeCCCeEEEEEcCCCcEEEEE-ecCCCC-eeEEEEcCCCCEEEEE---cCCCe------
Q 046394           83 KEHGEV-LKLQF-----LLASINKLGQLRYQNVTMGEIVGNF-WTGLGR-TDVIRVNPFNGVVSLG---HSGGT------  145 (378)
Q Consensus        83 ~~~~~~-~~l~~-----~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~-v~~~~~s~~~~~l~~~---~~d~~------  145 (378)
                      ..|... .+++|     +|++++.|+.|++||+++++.+..+ ..|.+. +.++.|+|++.+|++|   +.++.      
T Consensus       173 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~  252 (402)
T 2aq5_A          173 DVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDT  252 (402)
T ss_dssp             TTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEET
T ss_pred             CCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcC
Confidence            778776 99999     8999999999999999999999888 677665 8999999999999999   66766      


Q ss_pred             ----------eeecCCCEEEEEEecCCCEEEEE-ECCCeEEEEEcCCcee-eeee-----cCCceEEEEecCCCccccC
Q 046394          146 ----------MLCHQGPVSALAFHPNGHLMATS-GKDCKIKIWDLRKYEV-LQTL-----PGHAKTLDFSRKDSGDFSG  207 (378)
Q Consensus       146 ----------~~~h~~~v~~~~~sp~g~~l~t~-~~d~~i~iwd~~~~~~-~~~~-----~~~i~~~~~sp~g~~~~~~  207 (378)
                                ...|...|.+++|+|++++|+++ +.|+.|++||+.+++. +..+     ...+.+++|+|++.+.+..
T Consensus       253 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s~  331 (402)
T 2aq5_A          253 KHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVNK  331 (402)
T ss_dssp             TBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGGG
T ss_pred             ccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEecccccceec
Confidence                      12467789999999999998755 4799999999998874 4333     3789999999999886654

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.93  E-value=1.6e-24  Score=193.13  Aligned_cols=207  Identities=9%  Similarity=0.025  Sum_probs=167.2

Q ss_pred             eecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCC-C---eEEeeccCCCe-eEEEE------EEEEEeCCCeEEEEEc
Q 046394           41 IMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDG-T---ELHCSKEHGEV-LKLQF------LLASINKLGQLRYQNV  109 (378)
Q Consensus        41 l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~-~---~~~~~~~~~~~-~~l~~------~l~s~~~d~~i~iwd~  109 (378)
                      ..+|...|++++|+|++.+|++|+.||.|++||... .   ....+..|... .+++|      +|++++.|+.|++||+
T Consensus         7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~   86 (342)
T 1yfq_A            7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDL   86 (342)
T ss_dssp             SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECS
T ss_pred             ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEe
Confidence            357889999999999999999999999999999543 3   25556677765 99999      4899999999999999


Q ss_pred             -CCCcEEEEEec--CCCCeeEEEEcCCCCEEEEEcCCCe-------e---------------eecCCCEEEEEEecCCCE
Q 046394          110 -TMGEIVGNFWT--GLGRTDVIRVNPFNGVVSLGHSGGT-------M---------------LCHQGPVSALAFHPNGHL  164 (378)
Q Consensus       110 -~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~d~~-------~---------------~~h~~~v~~~~~sp~g~~  164 (378)
                       .+++. ..+..  |...|.+++|+| +.+|++++.|+.       .               ..|...|.+++|+|++  
T Consensus        87 ~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--  162 (342)
T 1yfq_A           87 IGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSR--  162 (342)
T ss_dssp             SSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSE--
T ss_pred             ccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEecCCc--
Confidence             87765 67777  999999999999 999999999987       1               1267889999999987  


Q ss_pred             EEEEECCCeEEEEEcCC-ceee-eee----cCCceEEEEec-CCCc----------cccCCCCC------ceEEEeeccC
Q 046394          165 MATSGKDCKIKIWDLRK-YEVL-QTL----PGHAKTLDFSR-KDSG----------DFSGSHNY------NRYMGYSMVK  221 (378)
Q Consensus       165 l~t~~~d~~i~iwd~~~-~~~~-~~~----~~~i~~~~~sp-~g~~----------~~~~~~~~------~~~~~~~~~~  221 (378)
                      +++++.|+.|++||+++ +... ...    ...+.+++|+| ++.+          .+|+....      .....+.. |
T Consensus       163 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~-~  241 (342)
T 1yfq_A          163 LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRC-H  241 (342)
T ss_dssp             EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEEC-C
T ss_pred             EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeec-c
Confidence            99999999999999998 5542 212    46899999999 8764          45544443      55556665 5


Q ss_pred             Cc---------ceeeeEEcCCCCeEEEecCCCeEEEEEcC
Q 046394          222 GY---------QIGKVSFRPYEDVLGIGHSMGVSGILIPG  252 (378)
Q Consensus       222 ~~---------~v~~~~~sp~g~~l~~~~~~g~~~~~~~~  252 (378)
                      ..         +|++++|+|++.+|++++.+|.+.+|...
T Consensus       242 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~  281 (342)
T 1yfq_A          242 RLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQ  281 (342)
T ss_dssp             CCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETT
T ss_pred             cccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCc
Confidence            43         89999999999999988888877666543

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.93  E-value=5.4e-24  Score=184.52  Aligned_cols=218  Identities=10%  Similarity=-0.028  Sum_probs=153.7

Q ss_pred             ceeeEEEeccceeeeeecccc---eeeEEeecCCCC-------------------------ceEEEEcCC----CCEEEE
Q 046394           15 VEKTWRIKQEAIAREVDILSS---RNQYDIMLPELG-------------------------PYTLDFTSS----GRYMAA   62 (378)
Q Consensus        15 ~~~~~~~~~~~~i~~~d~~~~---~~~~~l~~~~~~-------------------------v~~~~~sp~----g~~l~~   62 (378)
                      .+-.+..-....|++|+..++   ++++++.+|..+                         |.+++|+||    +.++++
T Consensus        53 ~~~~~~~~~~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s  132 (356)
T 2w18_A           53 KEPCIITACEDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLK  132 (356)
T ss_dssp             CEEEEEEEESSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEEE
T ss_pred             CccEEEEeccceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEEEe
Confidence            344455556788999999999   888888888653                         456777778    777776


Q ss_pred             EeC--------------------CCcEEEEeC--CCCeEEeeccCCCe-eEEEE--------EEEEEeCCCeEEEEEcCC
Q 046394           63 AGC--------------------KGYPYFYNR--DGTELHCSKEHGEV-LKLQF--------LLASINKLGQLRYQNVTM  111 (378)
Q Consensus        63 ~~~--------------------dg~i~iwd~--~~~~~~~~~~~~~~-~~l~~--------~l~s~~~d~~i~iwd~~~  111 (378)
                      ++.                    |+.|++|++  +|+.+..+.+|... ..++|        +|++++.|++|+|||+.+
T Consensus       133 ~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~T  212 (356)
T 2w18_A          133 SGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKT  212 (356)
T ss_dssp             EEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTT
T ss_pred             CCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCC
Confidence            553                    888999993  46777778888765 66677        699999999999999999


Q ss_pred             CcEEEEEecCC---CCeeEEEEcCCCCEEEEEcCCCeeeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee
Q 046394          112 GEIVGNFWTGL---GRTDVIRVNPFNGVVSLGHSGGTMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL  188 (378)
Q Consensus       112 ~~~~~~~~~~~---~~v~~~~~s~~~~~l~~~~~d~~~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~  188 (378)
                      |+++.++..|.   ..+.+++|+|+|.++++++.+.                ....+++|+.|++|++||..+++++..+
T Consensus       213 Gk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~----------------~~w~laSGs~D~tIklWd~~tgk~l~v~  276 (356)
T 2w18_A          213 GQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPC----------------AKESESLRSPVFQLIVINPKTTLSVGVM  276 (356)
T ss_dssp             CCEEEEEECCC---CCCEEEEEEETTEEEEEEC----------------------------CCEEEEEEETTTTEEEEEE
T ss_pred             CcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCC----------------CcceeeccCCCcEEEEEECCCCEEEEEE
Confidence            99999987643   3566677888877766543211                0114688999999999999999876554


Q ss_pred             ----c-CC---c--------eEEEEecCCCccccCCCCCceEEEeeccCCccee-eeEEcCCCCeEEEecCCCeEEEE
Q 046394          189 ----P-GH---A--------KTLDFSRKDSGDFSGSHNYNRYMGYSMVKGYQIG-KVSFRPYEDVLGIGHSMGVSGIL  249 (378)
Q Consensus       189 ----~-~~---i--------~~~~~sp~g~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~sp~g~~l~~~~~~g~~~~~  249 (378)
                          + +.   +        ..++.+.|+...+|+..+++.+..+.+ |...+. .++|+|||++|++|+.|+.+++|
T Consensus       277 ~~~~p~Gh~~~~lsg~~sg~~lASgS~DgTIkIWDl~tGk~l~tL~g-H~~~vvs~vafSPDG~~LaSGS~D~TIklW  353 (356)
T 2w18_A          277 LYCLPPGQAGRFLEGDVKDHCAAAILTSGTIAIWDLLLGQCTALLPP-VSDQHWSFVKWSGTDSHLLAGQKDGNIFVY  353 (356)
T ss_dssp             EECCCTTCCCCEEEEEEETTEEEEEETTSCEEEEETTTCSEEEEECC-C--CCCCEEEECSSSSEEEEECTTSCEEEE
T ss_pred             EeeccCCCcceeEccccCCCEEEEEcCCCcEEEEECCCCcEEEEecC-CCCCeEEEEEECCCCCEEEEEECCCcEEEe
Confidence                1 11   1        356777899999999999999999887 655444 58999999887777777655554

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.93  E-value=5e-24  Score=192.33  Aligned_cols=195  Identities=12%  Similarity=0.118  Sum_probs=164.0

Q ss_pred             eeeEEEeccceeeeeecc--cceeeEEeecCCCCceEEEEcCC--CCEEEEEeCCCcEEEEeCC-CC--eEEeeccCCCe
Q 046394           16 EKTWRIKQEAIAREVDIL--SSRNQYDIMLPELGPYTLDFTSS--GRYMAAAGCKGYPYFYNRD-GT--ELHCSKEHGEV   88 (378)
Q Consensus        16 ~~~~~~~~~~~i~~~d~~--~~~~~~~l~~~~~~v~~~~~sp~--g~~l~~~~~dg~i~iwd~~-~~--~~~~~~~~~~~   88 (378)
                      ...+....++.|++||+.  ++.....+.+|...|.+++|+|+  +.+|++|+.||.|++||.. +.  .+..+..|...
T Consensus        24 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~  103 (379)
T 3jrp_A           24 KRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSAS  103 (379)
T ss_dssp             SEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSC
T ss_pred             CEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcc
Confidence            445566678999999998  67778889999999999999987  8999999999999999954 43  56777778765


Q ss_pred             -eEEEE-------EEEEEeCCCeEEEEEcCCCc--EEEEEecCCCCeeEEEEcC-------------CCCEEEEEcCCCe
Q 046394           89 -LKLQF-------LLASINKLGQLRYQNVTMGE--IVGNFWTGLGRTDVIRVNP-------------FNGVVSLGHSGGT  145 (378)
Q Consensus        89 -~~l~~-------~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~v~~~~~s~-------------~~~~l~~~~~d~~  145 (378)
                       .+++|       ++++++.|+.|++||+.++.  ....+..|...|.+++|+|             ++.+|++++.|+.
T Consensus       104 v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~  183 (379)
T 3jrp_A          104 VNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNL  183 (379)
T ss_dssp             EEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSC
T ss_pred             eEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCe
Confidence             99999       79999999999999998873  4556778899999999999             6899999999987


Q ss_pred             ------------------eeecCCCEEEEEEecC---CCEEEEEECCCeEEEEEcCCcee---eeee-----cCCceEEE
Q 046394          146 ------------------MLCHQGPVSALAFHPN---GHLMATSGKDCKIKIWDLRKYEV---LQTL-----PGHAKTLD  196 (378)
Q Consensus       146 ------------------~~~h~~~v~~~~~sp~---g~~l~t~~~d~~i~iwd~~~~~~---~~~~-----~~~i~~~~  196 (378)
                                        +.+|...|.+++|+|+   +.+|++++.||.|+|||++++..   ...+     ...+++++
T Consensus       184 i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~  263 (379)
T 3jrp_A          184 VKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRAS  263 (379)
T ss_dssp             EEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEE
T ss_pred             EEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEE
Confidence                              4568999999999999   89999999999999999998631   1111     36789999


Q ss_pred             EecCCCccccCCCC
Q 046394          197 FSRKDSGDFSGSHN  210 (378)
Q Consensus       197 ~sp~g~~~~~~~~~  210 (378)
                      |+|+|.+.+....+
T Consensus       264 ~s~~g~~l~~~~~d  277 (379)
T 3jrp_A          264 WSLSGNVLALSGGD  277 (379)
T ss_dssp             ECSSSCCEEEEESS
T ss_pred             EcCCCCEEEEecCC
Confidence            99999876654443

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.93  E-value=8.2e-24  Score=186.40  Aligned_cols=195  Identities=18%  Similarity=0.212  Sum_probs=153.9

Q ss_pred             CceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeec--cCCCe-eEEEE-----EEEEEeCCCeEEEEEcCCCcEEEE
Q 046394           47 GPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSK--EHGEV-LKLQF-----LLASINKLGQLRYQNVTMGEIVGN  117 (378)
Q Consensus        47 ~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~--~~~~~-~~l~~-----~l~s~~~d~~i~iwd~~~~~~~~~  117 (378)
                      ..++|+||+++ +||+| .|++|+||| .++..+..+.  +|... ++++|     ++++|+.|++|++||+.+++.+..
T Consensus        27 y~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~  104 (318)
T 4ggc_A           27 YLNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRN  104 (318)
T ss_dssp             TCBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE
T ss_pred             cceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEE
Confidence            35789999986 77776 489999999 5677777665  45554 99999     999999999999999999999999


Q ss_pred             EecCCCCeeEEEEcCCCCEEEEEcCCCe---------------eeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCc
Q 046394          118 FWTGLGRTDVIRVNPFNGVVSLGHSGGT---------------MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKY  182 (378)
Q Consensus       118 ~~~~~~~v~~~~~s~~~~~l~~~~~d~~---------------~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~  182 (378)
                      +..|...+.++  ++++..+++++.++.               +.+|...+..+.+++++++|++++.|++|+|||++++
T Consensus       105 ~~~h~~~~~~~--~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~  182 (318)
T 4ggc_A          105 MTSHSARVGSL--SWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPG  182 (318)
T ss_dssp             EECCSSCEEEE--EEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCB
T ss_pred             ecCccceEEEe--ecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCC
Confidence            99988877665  456679999999887               6689999999999999999999999999999999987


Q ss_pred             eeeeee-------cCCceEEEEecCCCc-------------cccCCCCCceEEEeeccCCcceeeeEEcCCCCeEEEec-
Q 046394          183 EVLQTL-------PGHAKTLDFSRKDSG-------------DFSGSHNYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGH-  241 (378)
Q Consensus       183 ~~~~~~-------~~~i~~~~~sp~g~~-------------~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~-  241 (378)
                      +.....       ...+.++.++|++..             .+|+...........  +...+..+.|+|++..+++++ 
T Consensus       183 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~sg  260 (318)
T 4ggc_A          183 EGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD--AHSQVCSILWSPHYKELISGHG  260 (318)
T ss_dssp             TTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE--CSSCEEEEEEETTTTEEEEEEC
T ss_pred             cccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc--ceeeeeeeeecccccceEEEEE
Confidence            643222       367888999887653             455555555544433  566799999999998876543 


Q ss_pred             -CCCeEE
Q 046394          242 -SMGVSG  247 (378)
Q Consensus       242 -~~g~~~  247 (378)
                       .||.+.
T Consensus       261 ~~d~~i~  267 (318)
T 4ggc_A          261 FAQNQLV  267 (318)
T ss_dssp             TTTCCEE
T ss_pred             cCCCEEE
Confidence             455443

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.93  E-value=7.1e-24  Score=194.78  Aligned_cols=213  Identities=19%  Similarity=0.255  Sum_probs=171.4

Q ss_pred             CceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeec--cCCC-eeEEEE-----EEEEEeCCCeEEEEEcCCCcEEEE
Q 046394           47 GPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSK--EHGE-VLKLQF-----LLASINKLGQLRYQNVTMGEIVGN  117 (378)
Q Consensus        47 ~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~--~~~~-~~~l~~-----~l~s~~~d~~i~iwd~~~~~~~~~  117 (378)
                      .++.|+||++ ++||+|. |++|+||| .+|..+..+.  +|.. +++++|     +|++|+.|++|++||+.+++.+..
T Consensus       107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~  184 (420)
T 4gga_A          107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRN  184 (420)
T ss_dssp             TCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred             cceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEE
Confidence            4678999985 5788775 89999999 5666666554  5555 499999     999999999999999999999999


Q ss_pred             EecCCCCeeEEEEcCCCCEEEEEcCCCe---------------eeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCc
Q 046394          118 FWTGLGRTDVIRVNPFNGVVSLGHSGGT---------------MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKY  182 (378)
Q Consensus       118 ~~~~~~~v~~~~~s~~~~~l~~~~~d~~---------------~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~  182 (378)
                      +..|...+.++.++  +.+|++|+.++.               +.+|...+..+.|+|+|.++++++.|+.|+|||+.++
T Consensus       185 ~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~  262 (420)
T 4gga_A          185 MTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPG  262 (420)
T ss_dssp             ECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCC
T ss_pred             EeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccc
Confidence            99999999888774  679999999987               6789999999999999999999999999999999876


Q ss_pred             ee----eeee---cCCceEEEEecCCC-------------ccccCCCCCceEEEeeccCCcceeeeEEcCCCCeEEEec-
Q 046394          183 EV----LQTL---PGHAKTLDFSRKDS-------------GDFSGSHNYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGH-  241 (378)
Q Consensus       183 ~~----~~~~---~~~i~~~~~sp~g~-------------~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~-  241 (378)
                      +.    +...   ...|.+++|+|++.             ..+|+..++.+...+..  ...+.++.|+|++..|++++ 
T Consensus       263 ~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~--~~~v~~~~~~~~~~~lv~~sg  340 (420)
T 4gga_A          263 EGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDA--HSQVCSILWSPHYKELISGHG  340 (420)
T ss_dssp             SSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEEC--SSCEEEEEEETTTTEEEEEEC
T ss_pred             cccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeecc--ccceeeeeecCCCCeEEEEEe
Confidence            54    2333   46789999998654             36777777777776654  45689999999999887654 


Q ss_pred             -CCCeEE------------------------------EEEcCCCCcccccccCCC
Q 046394          242 -SMGVSG------------------------------ILIPGSGEPNFDSWVANP  265 (378)
Q Consensus       242 -~~g~~~------------------------------~~~~~s~d~~i~~w~~~~  265 (378)
                       .||.+.                              ++++++.|++|++|++..
T Consensus       341 ~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~  395 (420)
T 4gga_A          341 FAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE  395 (420)
T ss_dssp             TTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred             cCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence             566443                              356677777777777543

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.93  E-value=4.1e-24  Score=191.86  Aligned_cols=220  Identities=10%  Similarity=0.060  Sum_probs=146.6

Q ss_pred             eeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEeeccCCCeeEEEE------EEEEEeCCC
Q 046394           29 EVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTELHCSKEHGEVLKLQF------LLASINKLG  102 (378)
Q Consensus        29 ~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~l~~------~l~s~~~d~  102 (378)
                      +|++.+...+..+..|...|.+++|+|||++|++|+.+| ++|||...........+.++..+.+      ++++++.|+
T Consensus         3 i~s~~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~   81 (355)
T 3vu4_A            3 LGSMITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMRHLSKVRMLHRTNYVAFVTGVKE   81 (355)
T ss_dssp             ----------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECSCCCEEEECTTSSEEEEECSSTT
T ss_pred             cccccccCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecCCeEEEEEcCCCCEEEEEECCcc
Confidence            456667777777889999999999999999999998775 7899954333222222234445555      456778889


Q ss_pred             eEEEEEcCCCcEEEEEecCCCCeeEEEEcCCC-----------------------------------CEEEE--EcCCCe
Q 046394          103 QLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFN-----------------------------------GVVSL--GHSGGT  145 (378)
Q Consensus       103 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~-----------------------------------~~l~~--~~~d~~  145 (378)
                      +|++||+.+++++..+. +...|.+++|+++.                                   .++++  |+.+|.
T Consensus        82 ~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~~~la~~sg~~~g~  160 (355)
T 3vu4_A           82 VVHIWDDVKKQDVSRIK-VDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSNGLLVYSNEFNLGQ  160 (355)
T ss_dssp             EEEEEETTTTEEEEEEE-CSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEEEEEEETTEEEEEESSCTTC
T ss_pred             EEEEEECCCCcEEEEEE-CCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCceEEEEccEEEEeCCCcCcE
Confidence            99999999999988886 55688888888753                                   23333  344443


Q ss_pred             ------------------------------eeecCCCEEEEEEecCCCEEEEEECCCe-EEEEEcCCceeeeee-----c
Q 046394          146 ------------------------------MLCHQGPVSALAFHPNGHLMATSGKDCK-IKIWDLRKYEVLQTL-----P  189 (378)
Q Consensus       146 ------------------------------~~~h~~~v~~~~~sp~g~~l~t~~~d~~-i~iwd~~~~~~~~~~-----~  189 (378)
                                                    +.+|.+.|++++|+|+|++|++++.|++ |+|||+++++++.++     .
T Consensus       161 v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~  240 (355)
T 3vu4_A          161 IHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDR  240 (355)
T ss_dssp             EEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCC
T ss_pred             EEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCC
Confidence                                          3468899999999999999999999998 999999999998877     2


Q ss_pred             CCceEEEEecCCCc----------cccCCCCCceEE--E--------------------eeccCCcceeeeEEcCCCCeE
Q 046394          190 GHAKTLDFSRKDSG----------DFSGSHNYNRYM--G--------------------YSMVKGYQIGKVSFRPYEDVL  237 (378)
Q Consensus       190 ~~i~~~~~sp~g~~----------~~~~~~~~~~~~--~--------------------~~~~~~~~v~~~~~sp~g~~l  237 (378)
                      ..|.+++|+|+|.+          .+|+........  .                    +......+...++|+|+|..|
T Consensus       241 ~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l  320 (355)
T 3vu4_A          241 ADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLV  320 (355)
T ss_dssp             SCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEE
T ss_pred             CcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEE
Confidence            57999999999886          444433221000  0                    000011223668899999888


Q ss_pred             EEecCCCeEEEEE
Q 046394          238 GIGHSMGVSGILI  250 (378)
Q Consensus       238 ~~~~~~g~~~~~~  250 (378)
                      ++++.||.+.+|.
T Consensus       321 ~~~~~dg~~~~~~  333 (355)
T 3vu4_A          321 VVWPHTRMIETFK  333 (355)
T ss_dssp             EEETTTTEEEEEE
T ss_pred             EEEeCCCeEEEEE
Confidence            8887777665553

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.93  E-value=6.5e-24  Score=191.27  Aligned_cols=159  Identities=15%  Similarity=0.175  Sum_probs=133.4

Q ss_pred             eccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEe--eccCCCe-eEEEE-----
Q 046394           22 KQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTELHC--SKEHGEV-LKLQF-----   93 (378)
Q Consensus        22 ~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~-~~l~~-----   93 (378)
                      ..|++|++||+.+++.+..+. |...|.+++|+|||++|++++.++.+.+|..++..+..  ...|... .+++|     
T Consensus       154 ~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~  232 (365)
T 4h5i_A          154 KVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDT  232 (365)
T ss_dssp             CSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTE
T ss_pred             CCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEeccceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCC
Confidence            357899999999999998886 56889999999999999999866544444477766543  4556665 88999     


Q ss_pred             EEEEEeCCC----eEEEEEcCCCcE----EEEEecCCCCeeEEEEcCCCCEEEEEcCCCe---------------eeecC
Q 046394           94 LLASINKLG----QLRYQNVTMGEI----VGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT---------------MLCHQ  150 (378)
Q Consensus        94 ~l~s~~~d~----~i~iwd~~~~~~----~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~---------------~~~h~  150 (378)
                      .+++++.|+    .+.+||+.....    ...+..|...|++++|+|+|++||+|+.|+.               +.+|.
T Consensus       233 ~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~  312 (365)
T 4h5i_A          233 VLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHS  312 (365)
T ss_dssp             EEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSS
T ss_pred             EEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCccc
Confidence            788888776    688999877653    3456788899999999999999999999997               35799


Q ss_pred             CCEEEEEEecCCCEEEEEECCCeEEEEEcCC
Q 046394          151 GPVSALAFHPNGHLMATSGKDCKIKIWDLRK  181 (378)
Q Consensus       151 ~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~  181 (378)
                      .+|++++|+|||++|||+|.|++|+|||+..
T Consensus       313 ~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~  343 (365)
T 4h5i_A          313 FAITEVTISPDSTYVASVSAANTIHIIKLPL  343 (365)
T ss_dssp             SCEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred             CCEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence            9999999999999999999999999999964

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.93  E-value=1.8e-23  Score=192.55  Aligned_cols=225  Identities=10%  Similarity=0.001  Sum_probs=176.8

Q ss_pred             eccceeeeeecccceeeE-----EeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeC-CCCeEEeeccCCCe-eEEEE-
Q 046394           22 KQEAIAREVDILSSRNQY-----DIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNR-DGTELHCSKEHGEV-LKLQF-   93 (378)
Q Consensus        22 ~~~~~i~~~d~~~~~~~~-----~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~-~~l~~-   93 (378)
                      ..++.|++||+.+++...     .+.+|...|.+++|+|++.++++++.|+.|++||. ++..+..+..|... .+++| 
T Consensus       141 ~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~  220 (433)
T 3bws_A          141 LEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYD  220 (433)
T ss_dssp             TTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEE
T ss_pred             CCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEc
Confidence            446789999999998876     45578889999999999999999999999999994 56777788777765 88999 


Q ss_pred             -----EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcC--------CCe-------------ee
Q 046394           94 -----LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHS--------GGT-------------ML  147 (378)
Q Consensus        94 -----~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--------d~~-------------~~  147 (378)
                           ++++++.|+.|.+||+.+++.+..+.. ...+.+++|+|++..+++++.        ++.             ..
T Consensus       221 ~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~  299 (433)
T 3bws_A          221 PIRDLVYCSNWISEDISVIDRKTKLEIRKTDK-IGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI  299 (433)
T ss_dssp             TTTTEEEEEETTTTEEEEEETTTTEEEEECCC-CSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE
T ss_pred             CCCCEEEEEecCCCcEEEEECCCCcEEEEecC-CCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec
Confidence                 446666899999999999998887765 456899999999999888873        444             33


Q ss_pred             ecCCCEEEEEEecCCCEE-EEEECCCeEEEEEcCCceeeeee--cCCceEEEEecCCCcc--------------------
Q 046394          148 CHQGPVSALAFHPNGHLM-ATSGKDCKIKIWDLRKYEVLQTL--PGHAKTLDFSRKDSGD--------------------  204 (378)
Q Consensus       148 ~h~~~v~~~~~sp~g~~l-~t~~~d~~i~iwd~~~~~~~~~~--~~~i~~~~~sp~g~~~--------------------  204 (378)
                      .|...+.+++|+|+++.+ ++++.|+.|++||+.+++.+..+  ...+.+++|+|+|.+.                    
T Consensus       300 ~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~  379 (433)
T 3bws_A          300 GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLV  379 (433)
T ss_dssp             EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSS
T ss_pred             cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecCCCCCCeEEEcCCCCEEEEEecCCCcccccccccccc
Confidence            456688999999999754 66689999999999999988887  5778999999998742                    


Q ss_pred             -----ccCCCCCceEEEeeccCCcceeeeEEcCCCCeEEEecC-CCeEEEE
Q 046394          205 -----FSGSHNYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHS-MGVSGIL  249 (378)
Q Consensus       205 -----~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~-~g~~~~~  249 (378)
                           +|+..+...+..+..  ...+.+++|+|+|++|++++. ++.+.+|
T Consensus       380 dg~v~~~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~~d~~i~v~  428 (433)
T 3bws_A          380 LGKVYVIDTTTDTVKEFWEA--GNQPTGLDVSPDNRYLVISDFLDHQIRVY  428 (433)
T ss_dssp             CCEEEEEETTTTEEEEEEEC--SSSEEEEEECTTSCEEEEEETTTTEEEEE
T ss_pred             ceEEEEEECCCCcEEEEecC--CCCCceEEEcCCCCEEEEEECCCCeEEEE
Confidence                 233334444444443  456899999999988776553 6654444

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.93  E-value=5.5e-23  Score=182.87  Aligned_cols=195  Identities=17%  Similarity=0.212  Sum_probs=156.4

Q ss_pred             ceeeEEEeccceeeeeecccce-----eeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCCCe-----------
Q 046394           15 VEKTWRIKQEAIAREVDILSSR-----NQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTE-----------   78 (378)
Q Consensus        15 ~~~~~~~~~~~~i~~~d~~~~~-----~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~-----------   78 (378)
                      ....+..+.|+.|++||+.+.+     ....+.+|...|.+++|+|+|++|++|+.|+.|++|+.....           
T Consensus        51 ~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~  130 (340)
T 4aow_A           51 PDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKD  130 (340)
T ss_dssp             TTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSC
T ss_pred             CCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCc
Confidence            3456677888999999987653     456788999999999999999999999999999888842110           


Q ss_pred             ---------------------------------EEeeccCCCe-eEEEE-------EEEEEeCCCeEEEEEcCCCcEEEE
Q 046394           79 ---------------------------------LHCSKEHGEV-LKLQF-------LLASINKLGQLRYQNVTMGEIVGN  117 (378)
Q Consensus        79 ---------------------------------~~~~~~~~~~-~~l~~-------~l~s~~~d~~i~iwd~~~~~~~~~  117 (378)
                                                       ...+.+|... ..++|       ++++++.|+.|++||+.+++.+..
T Consensus       131 ~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~  210 (340)
T 4aow_A          131 VLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTN  210 (340)
T ss_dssp             EEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEE
T ss_pred             eeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeE
Confidence                                             0112234433 56666       788999999999999999999999


Q ss_pred             EecCCCCeeEEEEcCCCCEEEEEcCCCe-------------eeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCcee
Q 046394          118 FWTGLGRTDVIRVNPFNGVVSLGHSGGT-------------MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEV  184 (378)
Q Consensus       118 ~~~~~~~v~~~~~s~~~~~l~~~~~d~~-------------~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~  184 (378)
                      +..|.+.|.+++|+|++.+|++++.|+.             ...+...|.+++|+|++. +++++.|+.|+|||++++..
T Consensus       211 ~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~  289 (340)
T 4aow_A          211 HIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRY-WLCAATGPSIKIWDLEGKII  289 (340)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSSCEEEEEECSSSS-EEEEEETTEEEEEETTTTEE
T ss_pred             ecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCceEEeeecCCCCc-eeeccCCCEEEEEECCCCeE
Confidence            9999999999999999999999999998             334567899999999886 45566799999999998877


Q ss_pred             eeee------------cCCceEEEEecCCCccccCCCC
Q 046394          185 LQTL------------PGHAKTLDFSRKDSGDFSGSHN  210 (378)
Q Consensus       185 ~~~~------------~~~i~~~~~sp~g~~~~~~~~~  210 (378)
                      +..+            ...|++++|+|+|.+.+....+
T Consensus       290 ~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D  327 (340)
T 4aow_A          290 VDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTD  327 (340)
T ss_dssp             EEEECCC-------CCCCCEEEEEECTTSSEEEEEETT
T ss_pred             EEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCC
Confidence            6654            2568999999999876654433

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.93  E-value=2e-23  Score=193.55  Aligned_cols=204  Identities=12%  Similarity=0.033  Sum_probs=166.0

Q ss_pred             CCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCC---eEEeeccCC-----------------------------------
Q 046394           46 LGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGT---ELHCSKEHG-----------------------------------   86 (378)
Q Consensus        46 ~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~---~~~~~~~~~-----------------------------------   86 (378)
                      .++.+++|+|+|++|+++ .++.|++|| .+|.   .+..+..+.                                   
T Consensus         5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (450)
T 2vdu_B            5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS   83 (450)
T ss_dssp             CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred             ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence            478899999999966665 578999999 5666   555544322                                   


Q ss_pred             --------------------CeeEEEE-----E-EEEEeCCCeEEEEEcC--CCcEEEEEe--cCCCCeeEEEEcCCCCE
Q 046394           87 --------------------EVLKLQF-----L-LASINKLGQLRYQNVT--MGEIVGNFW--TGLGRTDVIRVNPFNGV  136 (378)
Q Consensus        87 --------------------~~~~l~~-----~-l~s~~~d~~i~iwd~~--~~~~~~~~~--~~~~~v~~~~~s~~~~~  136 (378)
                                          .+.+++|     + +++++.|+.|++||+.  ++..+..+.  .+...|.+++|+|++.+
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~  163 (450)
T 2vdu_B           84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTT  163 (450)
T ss_dssp             ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSE
T ss_pred             ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCE
Confidence                                2488888     5 5899999999999999  888888776  56788999999999999


Q ss_pred             EEEEcCCCe------------------eeecCCCEEEEEEecC---CCEEEEEECCCeEEEEEcCCceeeeee----cCC
Q 046394          137 VSLGHSGGT------------------MLCHQGPVSALAFHPN---GHLMATSGKDCKIKIWDLRKYEVLQTL----PGH  191 (378)
Q Consensus       137 l~~~~~d~~------------------~~~h~~~v~~~~~sp~---g~~l~t~~~d~~i~iwd~~~~~~~~~~----~~~  191 (378)
                      |++++.++.                  +.+|...|++++|+|+   +++|++++.|++|++||+.++.++..+    ...
T Consensus       164 l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~  243 (450)
T 2vdu_B          164 VIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHF  243 (450)
T ss_dssp             EEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSC
T ss_pred             EEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCc
Confidence            999998776                  3568899999999999   999999999999999999999888774    368


Q ss_pred             ceEEEEecCCCc----------cccCCCCCceEEEeec------------------------cCCcceeeeEEcCCCCeE
Q 046394          192 AKTLDFSRKDSG----------DFSGSHNYNRYMGYSM------------------------VKGYQIGKVSFRPYEDVL  237 (378)
Q Consensus       192 i~~~~~sp~g~~----------~~~~~~~~~~~~~~~~------------------------~~~~~v~~~~~sp~g~~l  237 (378)
                      |.+++|+ +|.+          .+|+..++.++..+..                        .....|.++.|+|++.+|
T Consensus       244 v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l  322 (450)
T 2vdu_B          244 VSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFV  322 (450)
T ss_dssp             EEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEE
T ss_pred             eEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEE
Confidence            9999999 8775          6777777776666542                        123568899999999999


Q ss_pred             EEec-CCCeEEEEEc
Q 046394          238 GIGH-SMGVSGILIP  251 (378)
Q Consensus       238 ~~~~-~~g~~~~~~~  251 (378)
                      ++++ .++.+.+|..
T Consensus       323 ~~~~~~d~~i~iw~~  337 (450)
T 2vdu_B          323 AFFVEATKCIIILEM  337 (450)
T ss_dssp             EEEETTCSEEEEEEE
T ss_pred             EEEECCCCeEEEEEe
Confidence            8887 7787777765

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.92  E-value=1.7e-23  Score=209.04  Aligned_cols=201  Identities=15%  Similarity=0.189  Sum_probs=163.9

Q ss_pred             eecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEeeccCCC-eeEEEE----EEEEEeCCCeEEEEEcCCCcEE
Q 046394           41 IMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTELHCSKEHGE-VLKLQF----LLASINKLGQLRYQNVTMGEIV  115 (378)
Q Consensus        41 l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~l~~----~l~s~~~d~~i~iwd~~~~~~~  115 (378)
                      ..+|...|++++|+|++++||+|+.||.|+||+..+........|.. +.+++|    +|++++.|++|++||+.+++++
T Consensus        13 ~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fspg~~L~S~s~D~~v~lWd~~~~~~~   92 (902)
T 2oaj_A           13 KYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVKGIYLVVINAKDTVYVLSLYSQKVL   92 (902)
T ss_dssp             EEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECSSCCCEEEEEEETTTEEEEEETTCEEEEEETTTCSEE
T ss_pred             ccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcCCCCCEEEEEEcCCCEEEEEECcCeEEEEECCCCcEE
Confidence            45788999999999999999999999999999966554433334554 599999    7999999999999999999999


Q ss_pred             EEEecCCCCeeEEEEcCCCCEEEEEcCCCe----------e---------------eecCCCEEEEEEecC-CCEEEEEE
Q 046394          116 GNFWTGLGRTDVIRVNPFNGVVSLGHSGGT----------M---------------LCHQGPVSALAFHPN-GHLMATSG  169 (378)
Q Consensus       116 ~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~----------~---------------~~h~~~v~~~~~sp~-g~~l~t~~  169 (378)
                      ..+. +...|++++|+|++.+|++|+.||.          +               .+|.++|++++|+|+ +..|++++
T Consensus        93 ~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~  171 (902)
T 2oaj_A           93 TTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISY  171 (902)
T ss_dssp             EEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEEC
T ss_pred             EEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEe
Confidence            8886 6688999999999999999999987          1               247889999999995 57899999


Q ss_pred             CCCeEEEEEcCCceeeeee--c-------------------CCceEEEEecCCCc----------cccCCCCCceEEE--
Q 046394          170 KDCKIKIWDLRKYEVLQTL--P-------------------GHAKTLDFSRKDSG----------DFSGSHNYNRYMG--  216 (378)
Q Consensus       170 ~d~~i~iwd~~~~~~~~~~--~-------------------~~i~~~~~sp~g~~----------~~~~~~~~~~~~~--  216 (378)
                      .|+.| +||+++++++..+  +                   ..|++++|+|+|.+          .+|+..++.++..  
T Consensus       172 ~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~  250 (902)
T 2oaj_A          172 EYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMART  250 (902)
T ss_dssp             SSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEEC
T ss_pred             CCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEe
Confidence            99999 9999999988777  3                   45999999998874          7788777666543  


Q ss_pred             e---ec------------cCCcceeeeEEc----CCC-CeEEEecCC
Q 046394          217 Y---SM------------VKGYQIGKVSFR----PYE-DVLGIGHSM  243 (378)
Q Consensus       217 ~---~~------------~~~~~v~~~~~s----p~g-~~l~~~~~~  243 (378)
                      +   ..            .+..+|++++|+    |++ .+|++|+.+
T Consensus       251 l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~  297 (902)
T 2oaj_A          251 VFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSI  297 (902)
T ss_dssp             SSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECS
T ss_pred             ecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCC
Confidence            1   11            024479999995    444 467777554

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.92  E-value=1.5e-23  Score=193.17  Aligned_cols=212  Identities=9%  Similarity=0.054  Sum_probs=148.1

Q ss_pred             EeccceeeeeecccceeeEEee-cCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEeeccCCC------eeEEEE
Q 046394           21 IKQEAIAREVDILSSRNQYDIM-LPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTELHCSKEHGE------VLKLQF   93 (378)
Q Consensus        21 ~~~~~~i~~~d~~~~~~~~~l~-~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------~~~l~~   93 (378)
                      ...++....|++.+++....+. .|...|.+++|||+|.+||+++.||.|++||..+ .+..+. |..      +.+++|
T Consensus        60 FsPdg~~~~~~~~~~~~~~~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~-~l~~l~-~~~~~~~~sv~svaf  137 (588)
T 2j04_A           60 EFPLEFENKLDFELAQQNGLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK-MLTNLD-SKGNLSSRTYHCFEW  137 (588)
T ss_dssp             EECCCCCCTTTTSCCCSSCSSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE-EEEECC-CSSCSTTTCEEEEEE
T ss_pred             ECCCCCcceEEEEeCCCceEeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc-eeeecc-CCCccccccEEEEEE
Confidence            3455666677777665433333 4567889999999999999999999999998655 556666 552      588888


Q ss_pred             -----EEEEEeCCCeEEEEEcCCCc-------EEEEEecCCCCeeEEEEcCCCCEEEEEcCCCeeeecCCCEEEEEEecC
Q 046394           94 -----LLASINKLGQLRYQNVTMGE-------IVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGTMLCHQGPVSALAFHPN  161 (378)
Q Consensus        94 -----~l~s~~~d~~i~iwd~~~~~-------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~~~~h~~~v~~~~~sp~  161 (378)
                           +|++|+.||+|++||+.++.       .+.++..+.                        .+|...|.+++|+|+
T Consensus       138 SPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~------------------------~gh~~~V~sVawSPd  193 (588)
T 2j04_A          138 NPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSD------------------------AGSKDWVTHIVWYED  193 (588)
T ss_dssp             CSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSC------------------------TTCCCCEEEEEEETT
T ss_pred             cCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeeccc------------------------ccccccEEEEEEcCC
Confidence                 89999999999999988775       255654332                        256778888888888


Q ss_pred             CCEEEEEECCCeEEEEEcCCcee---eeee---c-CCceEEEEecC--------CCccccCCCCCceEEEeeccCCccee
Q 046394          162 GHLMATSGKDCKIKIWDLRKYEV---LQTL---P-GHAKTLDFSRK--------DSGDFSGSHNYNRYMGYSMVKGYQIG  226 (378)
Q Consensus       162 g~~l~t~~~d~~i~iwd~~~~~~---~~~~---~-~~i~~~~~sp~--------g~~~~~~~~~~~~~~~~~~~~~~~v~  226 (378)
                      |  +++++.|++|++||+..+..   ..++   + ..|.+++|+ +        +...+|+...........+ |...|.
T Consensus       194 g--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs-g~~LASa~~~tIkLWd~~~~~~~~~~~g-h~~~V~  269 (588)
T 2j04_A          194 V--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV-DYKVVLTCPGYVHKIDLKNYSISSLKTG-SLENFH  269 (588)
T ss_dssp             E--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE-TTEEEEECSSEEEEEETTTTEEEEEECS-CCSCCC
T ss_pred             c--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE-CCEEEEEeCCeEEEEECCCCeEEEEEcC-CCceEE
Confidence            7  77777788888888876653   2333   2 467777777 2        1125666555544222225 888899


Q ss_pred             eeEE--cCCCCeEEEecCCCeEEEEEcC------------CCCcccccccC
Q 046394          227 KVSF--RPYEDVLGIGHSMGVSGILIPG------------SGEPNFDSWVA  263 (378)
Q Consensus       227 ~~~~--sp~g~~l~~~~~~g~~~~~~~~------------s~d~~i~~w~~  263 (378)
                      ++.|  +|++..|++++.+|. .+|...            +.|+++.+|+.
T Consensus       270 ~va~~~s~d~~~La~a~edG~-klw~~d~~~~spd~~l~a~~d~~v~lW~~  319 (588)
T 2j04_A          270 IIPLNHEKESTILLMSNKTSY-KVLLEDELHVTADNIIAPYLEKKFKKWST  319 (588)
T ss_dssp             EEEETTCSSCEEEEECSSCEE-EEEESSSEEEECCCSSHHHHHHHHHHTTT
T ss_pred             EEEeeeCCCCCEEEEEcCCCC-EEEeeccEEECCCceEEEEcCCEEEEEEC
Confidence            9999  999989999998887 666521            12667777765

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.92  E-value=5.2e-23  Score=183.06  Aligned_cols=186  Identities=12%  Similarity=0.040  Sum_probs=145.3

Q ss_pred             EEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCC-----CeEEeeccCCCe-eEEEE-------EEEEEeCCCeEE
Q 046394           39 YDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDG-----TELHCSKEHGEV-LKLQF-------LLASINKLGQLR  105 (378)
Q Consensus        39 ~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~-----~~~~~~~~~~~~-~~l~~-------~l~s~~~d~~i~  105 (378)
                      ..+.+|...|++++|+|++++|++|+.||.|++||...     ..+..+.+|... .+++|       +|++++.|+.|+
T Consensus         5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~   84 (351)
T 3f3f_A            5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK   84 (351)
T ss_dssp             CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred             ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence            34678999999999999999999999999999999543     356677888876 99999       899999999999


Q ss_pred             EEEcCCC---------cEEEEEecCCCCeeEEEEcCC--CCEEEEEcCCCe---------------------------ee
Q 046394          106 YQNVTMG---------EIVGNFWTGLGRTDVIRVNPF--NGVVSLGHSGGT---------------------------ML  147 (378)
Q Consensus       106 iwd~~~~---------~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~d~~---------------------------~~  147 (378)
                      +||+.++         +.+..+..|...|.+++|+|+  +.+|++++.|+.                           ..
T Consensus        85 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~  164 (351)
T 3f3f_A           85 LWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPA  164 (351)
T ss_dssp             EEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCS
T ss_pred             EEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccC
Confidence            9999887         557777777777788888877  777777777776                           01


Q ss_pred             ecCCCEEEEEEecC---CCEEEEEECCCeEEEEEcCCceeeeeecCCceEEEEecCCCccccCCCCCceEEEeeccCCcc
Q 046394          148 CHQGPVSALAFHPN---GHLMATSGKDCKIKIWDLRKYEVLQTLPGHAKTLDFSRKDSGDFSGSHNYNRYMGYSMVKGYQ  224 (378)
Q Consensus       148 ~h~~~v~~~~~sp~---g~~l~t~~~d~~i~iwd~~~~~~~~~~~~~i~~~~~sp~g~~~~~~~~~~~~~~~~~~~~~~~  224 (378)
                      .|...+.+++|+|+   +.+|++++.|+.+.+|+...+..                           ..+..+.+ |...
T Consensus       165 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~-h~~~  216 (351)
T 3f3f_A          165 NHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKL---------------------------HVAAKLPG-HKSL  216 (351)
T ss_dssp             SCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCE---------------------------EEEEECCC-CCSC
T ss_pred             CcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCce---------------------------eeeeecCC-CCcc
Confidence            46667777777775   77777777777776666544321                           22445555 7888


Q ss_pred             eeeeEEcCCC----CeEEEecCCCeEEEEEcC
Q 046394          225 IGKVSFRPYE----DVLGIGHSMGVSGILIPG  252 (378)
Q Consensus       225 v~~~~~sp~g----~~l~~~~~~g~~~~~~~~  252 (378)
                      |++++|+|++    .+|++|+.||.+.+|...
T Consensus       217 i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~  248 (351)
T 3f3f_A          217 IRSISWAPSIGRWYQLIATGCKDGRIRIFKIT  248 (351)
T ss_dssp             EEEEEECCCSSCSSEEEEEEETTSCEEEEEEE
T ss_pred             eeEEEECCCCCCcceEEEEEcCCCeEEEEeCC
Confidence            9999999998    788888888877777543

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.92  E-value=1.7e-22  Score=185.98  Aligned_cols=237  Identities=10%  Similarity=0.044  Sum_probs=181.1

Q ss_pred             eeeeeecccc--eeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeC-CCCeEE-----eeccCCCe-eEEEE---
Q 046394           26 IAREVDILSS--RNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNR-DGTELH-----CSKEHGEV-LKLQF---   93 (378)
Q Consensus        26 ~i~~~d~~~~--~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~-~~~~~~-----~~~~~~~~-~~l~~---   93 (378)
                      .+..+|..++  +.+..+..+ ..+.+++|+|++.++++++.++.|++||. ++..+.     .+.+|.+. .+++|   
T Consensus       102 ~l~~~d~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~  180 (433)
T 3bws_A          102 KLIALDKEGITHRFISRFKTG-FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEH  180 (433)
T ss_dssp             CEEECCBTTCSEEEEEEEECS-SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGG
T ss_pred             EEEEECCCCCcceEEEEEcCC-CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCC
Confidence            4455555434  555666665 56779999997777888888999999995 456555     34567665 88999   


Q ss_pred             --EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEE-EcCCCe-------------eeecCCCEEEEE
Q 046394           94 --LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSL-GHSGGT-------------MLCHQGPVSALA  157 (378)
Q Consensus        94 --~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~d~~-------------~~~h~~~v~~~~  157 (378)
                        ++++++.|+.|++||+.+++.+..+..+...+.+++|+|++..+++ ++.++.             ...+...+.+++
T Consensus       181 ~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~  260 (433)
T 3bws_A          181 NELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLL  260 (433)
T ss_dssp             TEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEE
T ss_pred             CEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEE
Confidence              8899999999999999999999999888899999999999998754 446666             122345689999


Q ss_pred             EecCCCEEEEEE--------CCCeEEEEEcCCceeeeee--cCCceEEEEecCCCc-----------cccCCCCCceEEE
Q 046394          158 FHPNGHLMATSG--------KDCKIKIWDLRKYEVLQTL--PGHAKTLDFSRKDSG-----------DFSGSHNYNRYMG  216 (378)
Q Consensus       158 ~sp~g~~l~t~~--------~d~~i~iwd~~~~~~~~~~--~~~i~~~~~sp~g~~-----------~~~~~~~~~~~~~  216 (378)
                      |+|+|+++++++        .|+.|++||+.+++.+..+  ...+.+++|+|+|..           .+|+..+......
T Consensus       261 ~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~  340 (433)
T 3bws_A          261 LSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKS  340 (433)
T ss_dssp             ECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             EcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEE
Confidence            999999999888        4889999999999888777  467889999999864           4555555555555


Q ss_pred             eeccCCcceeeeEEcCCCCeEEEecCCCe---EEEEEcCCCCcccccccCCC
Q 046394          217 YSMVKGYQIGKVSFRPYEDVLGIGHSMGV---SGILIPGSGEPNFDSWVANP  265 (378)
Q Consensus       217 ~~~~~~~~v~~~~~sp~g~~l~~~~~~g~---~~~~~~~s~d~~i~~w~~~~  265 (378)
                      +.  +...+.+++|+|+|.+|++++.+..   ..++++|+.|+.+.+|+...
T Consensus       341 ~~--~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~  390 (433)
T 3bws_A          341 IP--VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTT  390 (433)
T ss_dssp             EE--CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTT
T ss_pred             ec--CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCC
Confidence            43  4567899999999998888776421   12345666777788887644

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.92  E-value=1.3e-22  Score=182.19  Aligned_cols=219  Identities=9%  Similarity=0.061  Sum_probs=168.5

Q ss_pred             eeecccceeeEEeecCCCCceEEEEcCC---CCEEEEEeCCCcEEEEeCC--CCeE-EeeccCCCe-eEEEE-----EEE
Q 046394           29 EVDILSSRNQYDIMLPELGPYTLDFTSS---GRYMAAAGCKGYPYFYNRD--GTEL-HCSKEHGEV-LKLQF-----LLA   96 (378)
Q Consensus        29 ~~d~~~~~~~~~l~~~~~~v~~~~~sp~---g~~l~~~~~dg~i~iwd~~--~~~~-~~~~~~~~~-~~l~~-----~l~   96 (378)
                      .++......+..+.+|...|++++|+|+   |.+|++|+.||.|++||..  +..+ ..+.+|... .+++|     +|+
T Consensus        23 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~  102 (368)
T 3mmy_A           23 TDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVF  102 (368)
T ss_dssp             CCSSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEE
T ss_pred             cCCCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEE
Confidence            4556666777888999999999999999   6999999999999999954  4554 678888876 99999     899


Q ss_pred             EEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEE--cCCCCEEEEEcCCCe-------------eeecCCCEEEEEEecC
Q 046394           97 SINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRV--NPFNGVVSLGHSGGT-------------MLCHQGPVSALAFHPN  161 (378)
Q Consensus        97 s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~--s~~~~~l~~~~~d~~-------------~~~h~~~v~~~~~sp~  161 (378)
                      +++.|+.|++||+.+++.+. +..|...|.+++|  +|++.+|++++.|+.             .......+.++.+.+ 
T Consensus       103 s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~-  180 (368)
T 3mmy_A          103 TASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIY-  180 (368)
T ss_dssp             EEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEET-
T ss_pred             EEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecC-
Confidence            99999999999999988776 4568899999999  999999999999997             122334566666654 


Q ss_pred             CCEEEEEECCCeEEEEEcCCceeeeee-----cCCceEEEEec--------------CCCccccCCCCC---ceEEEeec
Q 046394          162 GHLMATSGKDCKIKIWDLRKYEVLQTL-----PGHAKTLDFSR--------------KDSGDFSGSHNY---NRYMGYSM  219 (378)
Q Consensus       162 g~~l~t~~~d~~i~iwd~~~~~~~~~~-----~~~i~~~~~sp--------------~g~~~~~~~~~~---~~~~~~~~  219 (378)
                       ..+++++.++.+.+||+.........     .....++.+.+              +|...+|+....   ..+..+..
T Consensus       181 -~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~  259 (368)
T 3mmy_A          181 -PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKC  259 (368)
T ss_dssp             -TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEEC
T ss_pred             -CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeee
Confidence             48899999999999999875443222     23344444433              444567766554   44455555


Q ss_pred             cCCc------------ceeeeEEcCCCCeEEEecCCCeEEEEEc
Q 046394          220 VKGY------------QIGKVSFRPYEDVLGIGHSMGVSGILIP  251 (378)
Q Consensus       220 ~~~~------------~v~~~~~sp~g~~l~~~~~~g~~~~~~~  251 (378)
                       |..            +|++++|+|++.+|++|+.||.+.+|..
T Consensus       260 -~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~  302 (368)
T 3mmy_A          260 -HRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDK  302 (368)
T ss_dssp             -SEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEET
T ss_pred             -eecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEEC
Confidence             443            6999999999999988888887666654

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.92  E-value=5e-23  Score=183.91  Aligned_cols=174  Identities=11%  Similarity=0.040  Sum_probs=135.3

Q ss_pred             eecCCceeeEEEec-cceeeeeecccceeeEEee-cCCCCceEEEEcC--CCCEEEEEeCCCcEEEEeC-CCCeEEeecc
Q 046394           10 LEAEGVEKTWRIKQ-EAIAREVDILSSRNQYDIM-LPELGPYTLDFTS--SGRYMAAAGCKGYPYFYNR-DGTELHCSKE   84 (378)
Q Consensus        10 l~~~~~~~~~~~~~-~~~i~~~d~~~~~~~~~l~-~~~~~v~~~~~sp--~g~~l~~~~~dg~i~iwd~-~~~~~~~~~~   84 (378)
                      +.+.+.+.++++|. ++.+.+||+.+++.+..+. .|...|.+++|+|  ++++|++|+.||.|++||. ++..+..+..
T Consensus        88 ~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~  167 (343)
T 3lrv_A           88 IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSA  167 (343)
T ss_dssp             EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECC
T ss_pred             eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEec
Confidence            44555666666654 4566667777877666665 6778899999999  9999999999999999995 4555555544


Q ss_pred             CCC--eeEEEE-----EEEEEeCCCeEEEEEcCCCcEE-EEEec-CCCCeeEEEEcCCCCEEEEEcCCCe----------
Q 046394           85 HGE--VLKLQF-----LLASINKLGQLRYQNVTMGEIV-GNFWT-GLGRTDVIRVNPFNGVVSLGHSGGT----------  145 (378)
Q Consensus        85 ~~~--~~~l~~-----~l~s~~~d~~i~iwd~~~~~~~-~~~~~-~~~~v~~~~~s~~~~~l~~~~~d~~----------  145 (378)
                      +..  +.+++|     +|++|+.|+.|++||+++++.+ ..+.. |.+.|.+++|+|++.+|++++.+..          
T Consensus       168 ~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd~~~~~~  247 (343)
T 3lrv_A          168 KSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECDQTVVCFDLRKDVG  247 (343)
T ss_dssp             CSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEESSBEEEEETTSSTT
T ss_pred             CCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeCCeEEEEEcCCCCc
Confidence            433  489999     9999999999999999999887 78887 8999999999999999999996533          


Q ss_pred             ---ee---ecCCCEE--EEEEecCCCEEEEEEC-CCeEEEEEcCCce
Q 046394          146 ---ML---CHQGPVS--ALAFHPNGHLMATSGK-DCKIKIWDLRKYE  183 (378)
Q Consensus       146 ---~~---~h~~~v~--~~~~sp~g~~l~t~~~-d~~i~iwd~~~~~  183 (378)
                         +.   .|...+.  +++|+|+|++|++++. |+.|+||++....
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~  294 (343)
T 3lrv_A          248 TLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKT  294 (343)
T ss_dssp             CBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTT
T ss_pred             ceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccc
Confidence               11   1333343  5999999999999998 9999999996643

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.92  E-value=2.7e-23  Score=191.50  Aligned_cols=225  Identities=12%  Similarity=0.099  Sum_probs=166.5

Q ss_pred             EEeecCCCCceEEEEcCC-CCEEEEEeCCCcEEEEeCC-----------CCeEEeeccCCCe-eEEEE------EEEEEe
Q 046394           39 YDIMLPELGPYTLDFTSS-GRYMAAAGCKGYPYFYNRD-----------GTELHCSKEHGEV-LKLQF------LLASIN   99 (378)
Q Consensus        39 ~~l~~~~~~v~~~~~sp~-g~~l~~~~~dg~i~iwd~~-----------~~~~~~~~~~~~~-~~l~~------~l~s~~   99 (378)
                      .....|.+.|++++|+|+ +.+||+++.+|.|++||..           ...+..+.+|... .+++|      +|++|+
T Consensus       122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~  201 (430)
T 2xyi_A          122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS  201 (430)
T ss_dssp             EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred             EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence            455678899999999997 6799999999999999953           4667788889876 99999      899999


Q ss_pred             CCCeEEEEEcCCCcE-------EEEEecCCCCeeEEEEcC-CCCEEEEEcCCCe-----------------eeecCCCEE
Q 046394          100 KLGQLRYQNVTMGEI-------VGNFWTGLGRTDVIRVNP-FNGVVSLGHSGGT-----------------MLCHQGPVS  154 (378)
Q Consensus       100 ~d~~i~iwd~~~~~~-------~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~-----------------~~~h~~~v~  154 (378)
                      .||.|++||+.++..       ...+..|...|.+++|+| ++.+|++++.++.                 +..|...|+
T Consensus       202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~  281 (430)
T 2xyi_A          202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVN  281 (430)
T ss_dssp             TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEE
T ss_pred             CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeE
Confidence            999999999987321       456668889999999999 6789999998887                 457889999


Q ss_pred             EEEEecCCC-EEEEEECCCeEEEEEcCC-ceeeeee---cCCceEEEEecCCCccccCCCCCceEEEeeccCCcce----
Q 046394          155 ALAFHPNGH-LMATSGKDCKIKIWDLRK-YEVLQTL---PGHAKTLDFSRKDSGDFSGSHNYNRYMGYSMVKGYQI----  225 (378)
Q Consensus       155 ~~~~sp~g~-~l~t~~~d~~i~iwd~~~-~~~~~~~---~~~i~~~~~sp~g~~~~~~~~~~~~~~~~~~~~~~~v----  225 (378)
                      +++|+|++. +|++++.||.|++||+++ ..++..+   ...+.+++|+|++...+........+..|........    
T Consensus       282 ~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~  361 (430)
T 2xyi_A          282 CLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTE  361 (430)
T ss_dssp             EEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHH
T ss_pred             EEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCcc
Confidence            999999887 689999999999999998 5566666   4789999999998753333322233444433110000    


Q ss_pred             ------eeeEEcC---CCCeEE-EecCCCeEEEEEcCCCCcccccccCC
Q 046394          226 ------GKVSFRP---YEDVLG-IGHSMGVSGILIPGSGEPNFDSWVAN  264 (378)
Q Consensus       226 ------~~~~~sp---~g~~l~-~~~~~g~~~~~~~~s~d~~i~~w~~~  264 (378)
                            ..+.+..   .+.... .-+.++. .++++++.|+.|++|++.
T Consensus       362 ~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~-~~l~s~s~dg~i~iw~~~  409 (430)
T 2xyi_A          362 DAEDGPPELLFIHGGHTAKISDFSWNPNEP-WIICSVSEDNIMQVWQMA  409 (430)
T ss_dssp             HHHHCCTTEEEECCCCSSCEEEEEECSSST-TEEEEEETTSEEEEEEEC
T ss_pred             ccccCCcceEEEcCCCCCCceEEEECCCCC-CEEEEEECCCCEEEeEcc
Confidence                  0122211   112222 2223331 267788899999999864

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.91  E-value=9.2e-22  Score=178.67  Aligned_cols=243  Identities=10%  Similarity=0.051  Sum_probs=181.1

Q ss_pred             EEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEe-CCCcEEEEeC-CCCeEEeeccCCCeeEEEE---
Q 046394           19 WRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAG-CKGYPYFYNR-DGTELHCSKEHGEVLKLQF---   93 (378)
Q Consensus        19 ~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~-~dg~i~iwd~-~~~~~~~~~~~~~~~~l~~---   93 (378)
                      +....++.|++||+.+++....+..+. .+.+++|+|+|++|++++ .++.|++||. ++..+..+..+..+.+++|   
T Consensus        48 ~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~d  126 (391)
T 1l0q_A           48 VANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPD  126 (391)
T ss_dssp             EEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTT
T ss_pred             EECCCCCeEEEEECCCCeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCC
Confidence            344468999999999999998888774 899999999999886555 5799999995 4566677777777788999   


Q ss_pred             ---EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEE-EEEcCCCe-------------eeecCCCEEEE
Q 046394           94 ---LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVV-SLGHSGGT-------------MLCHQGPVSAL  156 (378)
Q Consensus        94 ---~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~d~~-------------~~~h~~~v~~~  156 (378)
                         ++++++.|+.|++||+.+++.+..+..+ ..+.+++|+|++..+ ++++.++.             ...+...+.++
T Consensus       127 g~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~  205 (391)
T 1l0q_A          127 GKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGI  205 (391)
T ss_dssp             SSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEE
T ss_pred             CCEEEEEeCCCCEEEEEECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecCCCccce
Confidence               4478888999999999999998888765 567999999999877 56666666             33456788999


Q ss_pred             EEecCCCEEEEEE---CCCeEEEEEcCCceeeeee--cCCceEEEEecCCCc-----------cccCCCCCceEEEeecc
Q 046394          157 AFHPNGHLMATSG---KDCKIKIWDLRKYEVLQTL--PGHAKTLDFSRKDSG-----------DFSGSHNYNRYMGYSMV  220 (378)
Q Consensus       157 ~~sp~g~~l~t~~---~d~~i~iwd~~~~~~~~~~--~~~i~~~~~sp~g~~-----------~~~~~~~~~~~~~~~~~  220 (378)
                      +|+|+|++|++++   .++.|++||+.+++.+..+  +..+.+++|+|+|.+           .+|+..+...+..+.. 
T Consensus       206 ~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~-  284 (391)
T 1l0q_A          206 AVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAV-  284 (391)
T ss_dssp             EECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-
T ss_pred             EECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCCCccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEEC-
Confidence            9999999998888   6899999999999988888  567889999999975           3445555555555544 


Q ss_pred             CCcce---eeeEEcCCCCeEEEec-----CCCeE-----EEEEcCCCCcccccccCC
Q 046394          221 KGYQI---GKVSFRPYEDVLGIGH-----SMGVS-----GILIPGSGEPNFDSWVAN  264 (378)
Q Consensus       221 ~~~~v---~~~~~sp~g~~l~~~~-----~~g~~-----~~~~~~s~d~~i~~w~~~  264 (378)
                      +..+.   ..+.+.|++..+.++.     ..+..     ..+...+.|...++|+..
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~  341 (391)
T 1l0q_A          285 GKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFG  341 (391)
T ss_dssp             SSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECS
T ss_pred             CcCCCccceeeecccccccccccccccccccccccccceEEEEeCCCCceEEEEECC
Confidence            33322   1245566554332111     11111     234566677888889863

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.91  E-value=4.8e-23  Score=202.73  Aligned_cols=189  Identities=12%  Similarity=0.114  Sum_probs=161.3

Q ss_pred             ceeeEEEeccceeeeeecc--cceeeEEeecCCCCceEEEEcCC--CCEEEEEeCCCcEEEEeCCCC---eEEeeccCCC
Q 046394           15 VEKTWRIKQEAIAREVDIL--SSRNQYDIMLPELGPYTLDFTSS--GRYMAAAGCKGYPYFYNRDGT---ELHCSKEHGE   87 (378)
Q Consensus        15 ~~~~~~~~~~~~i~~~d~~--~~~~~~~l~~~~~~v~~~~~sp~--g~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~   87 (378)
                      ....+....++.|++||+.  ++.....+.+|...|++++|+|+  +++|++|+.||.|++||..+.   .+..+.+|..
T Consensus        21 g~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~  100 (753)
T 3jro_A           21 GKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSA  100 (753)
T ss_dssp             SCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSS
T ss_pred             CCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCC
Confidence            3456667789999999998  66778889999999999999998  999999999999999995443   5677788877


Q ss_pred             e-eEEEE-------EEEEEeCCCeEEEEEcCCCc--EEEEEecCCCCeeEEEEcC-------------CCCEEEEEcCCC
Q 046394           88 V-LKLQF-------LLASINKLGQLRYQNVTMGE--IVGNFWTGLGRTDVIRVNP-------------FNGVVSLGHSGG  144 (378)
Q Consensus        88 ~-~~l~~-------~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~v~~~~~s~-------------~~~~l~~~~~d~  144 (378)
                      . .+++|       .+++|+.||.|++||+.++.  ....+..|...|.+++|+|             ++.+|++|+.||
T Consensus       101 ~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg  180 (753)
T 3jro_A          101 SVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADN  180 (753)
T ss_dssp             CEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTS
T ss_pred             CeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCC
Confidence            6 99999       79999999999999998873  4456678899999999999             589999999998


Q ss_pred             e------------------eeecCCCEEEEEEecC---CCEEEEEECCCeEEEEEcCCcee-----eeee---cCCceEE
Q 046394          145 T------------------MLCHQGPVSALAFHPN---GHLMATSGKDCKIKIWDLRKYEV-----LQTL---PGHAKTL  195 (378)
Q Consensus       145 ~------------------~~~h~~~v~~~~~sp~---g~~l~t~~~d~~i~iwd~~~~~~-----~~~~---~~~i~~~  195 (378)
                      .                  +.+|.+.|++++|+|+   +.+|++++.||.|++||++++..     +...   ...++++
T Consensus       181 ~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l  260 (753)
T 3jro_A          181 LVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRA  260 (753)
T ss_dssp             CEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCE
T ss_pred             eEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEE
Confidence            7                  4578999999999999   89999999999999999998642     2222   4678999


Q ss_pred             EEecCCCc
Q 046394          196 DFSRKDSG  203 (378)
Q Consensus       196 ~~sp~g~~  203 (378)
                      +|+|+|.+
T Consensus       261 ~~spdg~~  268 (753)
T 3jro_A          261 SWSLSGNV  268 (753)
T ss_dssp             EECTTTCC
T ss_pred             EEcCCCCE
Confidence            99998875

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.90  E-value=1.8e-22  Score=186.02  Aligned_cols=205  Identities=8%  Similarity=-0.002  Sum_probs=161.3

Q ss_pred             ceeeEEEeccceeeeeecccceeeEEeecCCC-----CceEEEEcCCCCEEEEEeCCCcEEEEeCCCC--------eEEe
Q 046394           15 VEKTWRIKQEAIAREVDILSSRNQYDIMLPEL-----GPYTLDFTSSGRYMAAAGCKGYPYFYNRDGT--------ELHC   81 (378)
Q Consensus        15 ~~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~-----~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~--------~~~~   81 (378)
                      .......+.++.+++||...  .+..+. |..     .|.+++|||||++||+|+.||+|+|||..+.        .+.+
T Consensus        97 G~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~t  173 (588)
T 2j04_A           97 DDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESS  173 (588)
T ss_dssp             SSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEE
T ss_pred             CCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeee
Confidence            33455677889999999655  555566 655     5999999999999999999999999996554        2566


Q ss_pred             e----ccCCCe-eEEEE---EEEEEeCCCeEEEEEcCCCcE---EEEEe-cCCCCeeEEEEcCCCCEEEEEcCCCe----
Q 046394           82 S----KEHGEV-LKLQF---LLASINKLGQLRYQNVTMGEI---VGNFW-TGLGRTDVIRVNPFNGVVSLGHSGGT----  145 (378)
Q Consensus        82 ~----~~~~~~-~~l~~---~l~s~~~d~~i~iwd~~~~~~---~~~~~-~~~~~v~~~~~s~~~~~l~~~~~d~~----  145 (378)
                      +    .+|... .+++|   -+++++.|++|++||+..+..   ..++. .|...|.+++|+  ++.||+++. +.    
T Consensus       174 i~~~~~gh~~~V~sVawSPdgLaass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~~-~tIkLW  250 (588)
T 2j04_A          174 IRLSDAGSKDWVTHIVWYEDVLVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTCP-GYVHKI  250 (588)
T ss_dssp             EECSCTTCCCCEEEEEEETTEEEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEECS-SEEEEE
T ss_pred             eecccccccccEEEEEEcCCcEEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCEEEEEeC-CeEEEE
Confidence            6    455554 99999   888889999999999988773   45663 677899999999  689999885 55    


Q ss_pred             ----------eeecCCCEEEEEE--ecCCCEEEEEECCCeEEEEEcCCceeeeeecCCceEEEEecCCCc--------cc
Q 046394          146 ----------MLCHQGPVSALAF--HPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHAKTLDFSRKDSG--------DF  205 (378)
Q Consensus       146 ----------~~~h~~~v~~~~~--sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~~~~i~~~~~sp~g~~--------~~  205 (378)
                                ..+|...|.+++|  +|++..+++++.||+ ++|....             ++++||+..        .+
T Consensus       251 d~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d~-------------~~~spd~~l~a~~d~~v~l  316 (588)
T 2j04_A          251 DLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLEDE-------------LHVTADNIIAPYLEKKFKK  316 (588)
T ss_dssp             ETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESSS-------------EEEECCCSSHHHHHHHHHH
T ss_pred             ECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeecc-------------EEECCCceEEEEcCCEEEE
Confidence                      2389999999999  999999999999999 9999872             568888874        66


Q ss_pred             cCCCCCceEEEeeccCCcceeeeEEcCCCCeEEEecC
Q 046394          206 SGSHNYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHS  242 (378)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~  242 (378)
                      |+..... +..+.  +...|++++|||||..+|+++.
T Consensus       317 W~~~g~~-l~~~~--~~~~I~~va~SPdG~~lA~~~~  350 (588)
T 2j04_A          317 WSTIWNE-FNNYE--TTLVIHGISLSPDGYSIAIVYD  350 (588)
T ss_dssp             TTTTTTS-SSSSC--CEEEEEEEEECTTSSEEEEEEE
T ss_pred             EECCCCc-eeeec--cceEEEEEEECCCCCEEEEEEe
Confidence            7653333 22222  2456999999999999998764

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.89  E-value=1.7e-21  Score=178.47  Aligned_cols=215  Identities=10%  Similarity=-0.015  Sum_probs=164.7

Q ss_pred             eeeeeec--ccceee--EEeecCCCCceEEEEcC--------------CCCEEEEEeCC------CcEEEEeCCCCeEEe
Q 046394           26 IAREVDI--LSSRNQ--YDIMLPELGPYTLDFTS--------------SGRYMAAAGCK------GYPYFYNRDGTELHC   81 (378)
Q Consensus        26 ~i~~~d~--~~~~~~--~~l~~~~~~v~~~~~sp--------------~g~~l~~~~~d------g~i~iwd~~~~~~~~   81 (378)
                      .+++||+  .+++.+  ..+.+|...+..+++++              .+..++.++.+      +.|++||.++.....
T Consensus        94 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~  173 (415)
T 2hqs_A           94 AYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYNQFV  173 (415)
T ss_dssp             EEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCSCEE
T ss_pred             EEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCCCEE
Confidence            8999999  999877  45888888888887775              15566666554      799999988888888


Q ss_pred             eccCCCe-eEEEE-----EEEEEeCCC---eEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEE-EEcCCCe------
Q 046394           82 SKEHGEV-LKLQF-----LLASINKLG---QLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVS-LGHSGGT------  145 (378)
Q Consensus        82 ~~~~~~~-~~l~~-----~l~s~~~d~---~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~d~~------  145 (378)
                      +..|... .+++|     .|++++.++   .|++||+.+++.. .+..+...+.+++|+|||+.|+ +++.++.      
T Consensus       174 l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~  252 (415)
T 2hqs_A          174 VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVM  252 (415)
T ss_dssp             EEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEE
T ss_pred             EeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEE
Confidence            8888765 99999     888888775   9999999998875 4566778899999999999777 5655553      


Q ss_pred             ---------eeecCCCEEEEEEecCCCEEEEEEC-CC--eEEEEEcCCceeeeee--cCCceEEEEecCCCcccc-----
Q 046394          146 ---------MLCHQGPVSALAFHPNGHLMATSGK-DC--KIKIWDLRKYEVLQTL--PGHAKTLDFSRKDSGDFS-----  206 (378)
Q Consensus       146 ---------~~~h~~~v~~~~~sp~g~~l~t~~~-d~--~i~iwd~~~~~~~~~~--~~~i~~~~~sp~g~~~~~-----  206 (378)
                               +..|...+.+++|+|+|++|++++. ++  .|.+||+.+++.....  ...+.+++|||||.+.++     
T Consensus       253 d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~  332 (415)
T 2hqs_A          253 DLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNG  332 (415)
T ss_dssp             ETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECS
T ss_pred             ECCCCCEEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEEEecCCCcccCeEECCCCCEEEEEECcC
Confidence                     5567788999999999999998886 44  6888899887654322  356789999999986433     


Q ss_pred             --------CCCCCceEEEeeccCCcceeeeEEcCCCCeEEEecCCC
Q 046394          207 --------GSHNYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMG  244 (378)
Q Consensus       207 --------~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g  244 (378)
                              +..+.... .+.. + ..+.+++|+|+|++|++++.++
T Consensus       333 g~~~i~~~d~~~~~~~-~l~~-~-~~~~~~~~spdg~~l~~~s~~~  375 (415)
T 2hqs_A          333 GQQHIAKQDLATGGVQ-VLSS-T-FLDETPSLAPNGTMVIYSSSQG  375 (415)
T ss_dssp             SCEEEEEEETTTCCEE-ECCC-S-SSCEEEEECTTSSEEEEEEEET
T ss_pred             CceEEEEEECCCCCEE-EecC-C-CCcCCeEEcCCCCEEEEEEcCC
Confidence                    33333322 2222 3 2689999999999888877654

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.89  E-value=1.2e-20  Score=172.88  Aligned_cols=207  Identities=14%  Similarity=0.065  Sum_probs=158.9

Q ss_pred             ceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCC---cEEEEeCCCCeEEeeccCCCe-eEEEE-----EE
Q 046394           25 AIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKG---YPYFYNRDGTELHCSKEHGEV-LKLQF-----LL   95 (378)
Q Consensus        25 ~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~-~~l~~-----~l   95 (378)
                      ..|++||+. +.....+..|...+.+++|||||++|++++.++   .|++||..+.....+..|.+. .+++|     .|
T Consensus       159 ~~i~i~d~~-g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~spdg~~l  237 (415)
T 2hqs_A          159 YELRVSDYD-GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKL  237 (415)
T ss_dssp             EEEEEEETT-SCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEE
T ss_pred             ceEEEEcCC-CCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecCCCcccCEEEcCCCCEE
Confidence            799999997 455678888989999999999999999999875   999999655455566666655 88999     45


Q ss_pred             E-EEeCCCe--EEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcC-CCe---------------eeecCCCEEEE
Q 046394           96 A-SINKLGQ--LRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHS-GGT---------------MLCHQGPVSAL  156 (378)
Q Consensus        96 ~-s~~~d~~--i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d~~---------------~~~h~~~v~~~  156 (378)
                      + +++.++.  |++||+.+++. ..+..+...+.+++|+|+|+.|++++. ++.               +..|...+.++
T Consensus       238 a~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~  316 (415)
T 2hqs_A          238 AFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDA  316 (415)
T ss_dssp             EEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEE
T ss_pred             EEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEEEecCCCcccCe
Confidence            5 6666554  99999988876 466677788999999999998888775 342               34466778899


Q ss_pred             EEecCCCEEEEEECC---CeEEEEEcCCceeeeee-cCCceEEEEecCCCccccCCCC------------CceEEEeecc
Q 046394          157 AFHPNGHLMATSGKD---CKIKIWDLRKYEVLQTL-PGHAKTLDFSRKDSGDFSGSHN------------YNRYMGYSMV  220 (378)
Q Consensus       157 ~~sp~g~~l~t~~~d---~~i~iwd~~~~~~~~~~-~~~i~~~~~sp~g~~~~~~~~~------------~~~~~~~~~~  220 (378)
                      +|+|+|++|++++.+   ..|.+||+.+++..... +..+.+++|+|||.+.++....            ......+.. 
T Consensus       317 ~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~~~~l~~-  395 (415)
T 2hqs_A          317 DVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPA-  395 (415)
T ss_dssp             EECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECCC-
T ss_pred             EECCCCCEEEEEECcCCceEEEEEECCCCCEEEecCCCCcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCcEEEeeC-
Confidence            999999999988864   58999999988774322 4578999999999864332211            222333444 


Q ss_pred             CCcceeeeEEcCCC
Q 046394          221 KGYQIGKVSFRPYE  234 (378)
Q Consensus       221 ~~~~v~~~~~sp~g  234 (378)
                      +...|.+++|+|.-
T Consensus       396 ~~~~v~~~~~~~~~  409 (415)
T 2hqs_A          396 TDGQVKFPAWSPYL  409 (415)
T ss_dssp             SSSEEEEEEECCCC
T ss_pred             CCCCCcCCcccccc
Confidence            66778999999875

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.87  E-value=1e-19  Score=161.33  Aligned_cols=230  Identities=10%  Similarity=-0.014  Sum_probs=160.9

Q ss_pred             eEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeC-CCcEEEEeC-CCCe-EEeeccCCCeeE-EEE
Q 046394           18 TWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGC-KGYPYFYNR-DGTE-LHCSKEHGEVLK-LQF   93 (378)
Q Consensus        18 ~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~-dg~i~iwd~-~~~~-~~~~~~~~~~~~-l~~   93 (378)
                      .+.-..++.|.+||+.+++....+..+...+ +++|+|+|++|++++. ++.|.+||. ++.. ...+..+..+.. ++|
T Consensus        13 ~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~   91 (331)
T 3u4y_A           13 IVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDI   91 (331)
T ss_dssp             EEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEE
T ss_pred             EEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEE
Confidence            4445568899999999999888888776667 9999999997777666 889999995 4554 666777767755 888


Q ss_pred             -----EEEEEeCC-C--eEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEE-cCCCe-ee----------------
Q 046394           94 -----LLASINKL-G--QLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLG-HSGGT-ML----------------  147 (378)
Q Consensus        94 -----~l~s~~~d-~--~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~d~~-~~----------------  147 (378)
                           +++++..+ +  .|.+||+.+++.+..+..+ ..+.+++|+|+|++++++ ..++. +.                
T Consensus        92 s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~  170 (331)
T 3u4y_A           92 TPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQE  170 (331)
T ss_dssp             CTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEE
T ss_pred             CCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCc
Confidence                 56654444 3  9999999999988887654 557899999999855554 33232 11                


Q ss_pred             --ecCCCEEEEEEecCCCEEEEE-ECCCeEEEEEcCCcee---eeee--cCCceEEEEecCCCcc-----------ccCC
Q 046394          148 --CHQGPVSALAFHPNGHLMATS-GKDCKIKIWDLRKYEV---LQTL--PGHAKTLDFSRKDSGD-----------FSGS  208 (378)
Q Consensus       148 --~h~~~v~~~~~sp~g~~l~t~-~~d~~i~iwd~~~~~~---~~~~--~~~i~~~~~sp~g~~~-----------~~~~  208 (378)
                        .....+.+++|+|+|++++.+ ..++.|.+||+.+++.   +..+  ...+..++|+|||.+.           +|+.
T Consensus       171 ~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~  250 (331)
T 3u4y_A          171 FISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQ  250 (331)
T ss_dssp             EECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSCCCCEEECTTSSEEEEECSSEEEEEEEET
T ss_pred             cccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCCCCceEEECCCCCEEEEEEcCCCEEEEEEC
Confidence              123457899999999966554 4688999999999888   7777  5678899999999952           3333


Q ss_pred             CCCce--EEEeecc---CCcc---eeeeEEcCCCCeEEEecC-CCeEEEE
Q 046394          209 HNYNR--YMGYSMV---KGYQ---IGKVSFRPYEDVLGIGHS-MGVSGIL  249 (378)
Q Consensus       209 ~~~~~--~~~~~~~---~~~~---v~~~~~sp~g~~l~~~~~-~g~~~~~  249 (378)
                      .+...  +..+...   +..+   +..++|+|||++|++++. ++.+.+|
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~  300 (331)
T 3u4y_A          251 LSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVF  300 (331)
T ss_dssp             TTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEE
T ss_pred             CCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEE
Confidence            33333  1111110   1112   234799999987654433 3344444

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.87  E-value=4.2e-20  Score=165.71  Aligned_cols=163  Identities=12%  Similarity=0.121  Sum_probs=126.5

Q ss_pred             eEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEE-EEEeCCCcEEEEe-CCCCeEEeeccCCCeeEEEE--
Q 046394           18 TWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYM-AAAGCKGYPYFYN-RDGTELHCSKEHGEVLKLQF--   93 (378)
Q Consensus        18 ~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l-~~~~~dg~i~iwd-~~~~~~~~~~~~~~~~~l~~--   93 (378)
                      .+....+..+++||+.++........+  ++..++++++++.+ ++|+.|+.|++|| .++..+..+..+..+.++.|  
T Consensus        33 ~la~g~~~~~~iw~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~~~~~v~~v~~~~  110 (355)
T 3vu4_A           33 CLILSTLKSFEIYNVHPVAHIMSQEMR--HLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIKVDAPVKDLFLSR  110 (355)
T ss_dssp             EEEEECSSEEEEEEETTEEEEEEEECS--CCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEECSSCEEEEEECS
T ss_pred             EEEEEcCCEEEEEecCCcceeeeeecC--CeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEECCCceEEEEEcC
Confidence            444444555789999988877665543  58888999988877 4677789999999 56666666654443454444  


Q ss_pred             --------------------------------------EEEE--EeCCCeEEEEEcCCCc---------------E-EEE
Q 046394           94 --------------------------------------LLAS--INKLGQLRYQNVTMGE---------------I-VGN  117 (378)
Q Consensus        94 --------------------------------------~l~s--~~~d~~i~iwd~~~~~---------------~-~~~  117 (378)
                                                            +++.  ++.||.|++||+.++.               + +..
T Consensus       111 ~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~  190 (355)
T 3vu4_A          111 EFIVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVL  190 (355)
T ss_dssp             SEEEEEETTEEEEEESSTTCCBSSCCEEEEEEEEEETTEEEEEESSCTTCEEEEECCC------------------CCEE
T ss_pred             CEEEEEEcCEEEEEECCCCceeeEEeccCCceEEEEccEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEE
Confidence                                                  1222  4678889999988765               2 677


Q ss_pred             EecCCCCeeEEEEcCCCCEEEEEcCCCe---------------ee-e-cCCCEEEEEEecCCCEEEEEECCCeEEEEEcC
Q 046394          118 FWTGLGRTDVIRVNPFNGVVSLGHSGGT---------------ML-C-HQGPVSALAFHPNGHLMATSGKDCKIKIWDLR  180 (378)
Q Consensus       118 ~~~~~~~v~~~~~s~~~~~l~~~~~d~~---------------~~-~-h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~  180 (378)
                      +..|.+.|.+++|+|++.+|++++.|+.               +. + |...|.+++|+|+|++|++++.|++|+|||+.
T Consensus       191 ~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~  270 (355)
T 3vu4_A          191 IKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIF  270 (355)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESS
T ss_pred             EEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEcc
Confidence            8899999999999999999999999983               44 4 99999999999999999999999999999997


Q ss_pred             Cc
Q 046394          181 KY  182 (378)
Q Consensus       181 ~~  182 (378)
                      .+
T Consensus       271 ~~  272 (355)
T 3vu4_A          271 ND  272 (355)
T ss_dssp             CC
T ss_pred             CC
Confidence            64

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.86  E-value=1.7e-20  Score=162.66  Aligned_cols=154  Identities=14%  Similarity=0.054  Sum_probs=116.9

Q ss_pred             cceeeeeec-ccceeeEEeecCCCCceEEEEcC---CCCEEEEEeCCCcEEEEe-CCCCeEEeeccCCC----eeEEEE-
Q 046394           24 EAIAREVDI-LSSRNQYDIMLPELGPYTLDFTS---SGRYMAAAGCKGYPYFYN-RDGTELHCSKEHGE----VLKLQF-   93 (378)
Q Consensus        24 ~~~i~~~d~-~~~~~~~~l~~~~~~v~~~~~sp---~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~----~~~l~~-   93 (378)
                      ++.|++|++ .+++.+..+.+|...+..++|+|   ++.+|++|+.|++|+||| .+|+.++++.+|..    +.+++| 
T Consensus       156 d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafS  235 (356)
T 2w18_A          156 DQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYS  235 (356)
T ss_dssp             TCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEE
T ss_pred             CCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEEC
Confidence            888999999 45888888889999999999999   779999999999999999 56888999986542    245566 


Q ss_pred             ----E------------EEEEeCCCeEEEEEcCCCcEEEEEe-----cCCCCeeEEEEcCCCCEEEEEcCCCe-------
Q 046394           94 ----L------------LASINKLGQLRYQNVTMGEIVGNFW-----TGLGRTDVIRVNPFNGVVSLGHSGGT-------  145 (378)
Q Consensus        94 ----~------------l~s~~~d~~i~iwd~~~~~~~~~~~-----~~~~~v~~~~~s~~~~~l~~~~~d~~-------  145 (378)
                          +            +++|+.|++|++||..+++.+..+.     +|...+.+..+  ++.++++++.|+.       
T Consensus       236 pdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~DgTIkIWDl~  313 (356)
T 2w18_A          236 EMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV--KDHCAAAILTSGTIAIWDLL  313 (356)
T ss_dssp             ETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEE--ETTEEEEEETTSCEEEEETT
T ss_pred             CCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcccc--CCCEEEEEcCCCcEEEEECC
Confidence                2            4778899999999999999876652     34444433333  3778888888887       


Q ss_pred             -------eeecCCCEE-EEEEecCCCEEEEEECCCeEEEEEc
Q 046394          146 -------MLCHQGPVS-ALAFHPNGHLMATSGKDCKIKIWDL  179 (378)
Q Consensus       146 -------~~~h~~~v~-~~~~sp~g~~l~t~~~d~~i~iwd~  179 (378)
                             +.+|...+. +++|+|+|++|++|+.|++|+|||+
T Consensus       314 tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          314 LGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             TCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             CCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence                   556766555 5889999999999999999999985

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.86  E-value=7.9e-20  Score=158.69  Aligned_cols=216  Identities=11%  Similarity=0.077  Sum_probs=154.9

Q ss_pred             ccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCC--CeEEeeccCC-C-eeEEEE-----
Q 046394           23 QEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDG--TELHCSKEHG-E-VLKLQF-----   93 (378)
Q Consensus        23 ~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~-~-~~~l~~-----   93 (378)
                      .++.|.+||+.+++.. .+..|...|.+++|+|+|++|++++ ++.|++||..+  ........+. . +.+++|     
T Consensus        20 ~~~~i~~~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~   97 (297)
T 2ojh_A           20 MRSSIEIFNIRTRKMR-VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGA   97 (297)
T ss_dssp             CCEEEEEEETTTTEEE-EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSS
T ss_pred             cceeEEEEeCCCCcee-eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCC
Confidence            4688999999988765 5556788999999999999999986 78999999654  4555555553 3 378888     


Q ss_pred             EEEEEe--CCC--eEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEE-EEcCCCe---------------eeecCCCE
Q 046394           94 LLASIN--KLG--QLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVS-LGHSGGT---------------MLCHQGPV  153 (378)
Q Consensus        94 ~l~s~~--~d~--~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~d~~---------------~~~h~~~v  153 (378)
                      .+++++  .++  .|.+|++.++. ...+..+ ..+..++|+|+++.|+ +++.++.               +..|...+
T Consensus        98 ~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  175 (297)
T 2ojh_A           98 LYAISDKVEFGKSAIYLLPSTGGT-PRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRN  175 (297)
T ss_dssp             EEEEEECTTTSSCEEEEEETTCCC-CEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCE
T ss_pred             EEEEEEeCCCCcceEEEEECCCCc-eEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCcc
Confidence            777777  334  44555555554 3344333 4588999999999777 5666664               44567789


Q ss_pred             EEEEEecCCCEEEEEE-CCCeEEEEEcC-Cceeeeee---cCCceEEEEecCCCcccc---------------------C
Q 046394          154 SALAFHPNGHLMATSG-KDCKIKIWDLR-KYEVLQTL---PGHAKTLDFSRKDSGDFS---------------------G  207 (378)
Q Consensus       154 ~~~~~sp~g~~l~t~~-~d~~i~iwd~~-~~~~~~~~---~~~i~~~~~sp~g~~~~~---------------------~  207 (378)
                      .+++|+|+|++|+.++ .++.+.||++. .+..+..+   ...+.+++|+|+|.+.++                     +
T Consensus       176 ~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d  255 (297)
T 2ojh_A          176 DGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMD  255 (297)
T ss_dssp             EEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEE
T ss_pred             ccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEe
Confidence            9999999999888766 58999999986 45555555   356788999999985332                     2


Q ss_pred             CCCCce--EEEeeccCCcceeeeEEcCCCCeEEEecCC
Q 046394          208 SHNYNR--YMGYSMVKGYQIGKVSFRPYEDVLGIGHSM  243 (378)
Q Consensus       208 ~~~~~~--~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~  243 (378)
                      ......  +..... |...+.++.|+|+|+.|++++.+
T Consensus       256 ~~~~~~~~~~~~~~-~~~~~~~~~~spdg~~l~~~~~~  292 (297)
T 2ojh_A          256 MDGGNVETLFDLFG-GQGTMNSPNWSPDGDEFAYVRYF  292 (297)
T ss_dssp             TTSCSCEEEEEEEE-STTTSCSCCBCTTSSEEEEEEEC
T ss_pred             cCCCCceeeeccCC-CCcccccceECCCCCEEEEEEec
Confidence            222222  222224 56678999999999988877654

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.86  E-value=8.5e-19  Score=165.60  Aligned_cols=222  Identities=12%  Similarity=0.003  Sum_probs=167.3

Q ss_pred             eEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeC---CCCeEEeeccCCCeeEEEE-
Q 046394           18 TWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNR---DGTELHCSKEHGEVLKLQF-   93 (378)
Q Consensus        18 ~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~---~~~~~~~~~~~~~~~~l~~-   93 (378)
                      .+....++.|.+||..+++.+..+..+.. +.+++|+|||++|++++.|+.|.+||.   ++..+..+..+..+..++| 
T Consensus       152 ~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~~p~~va~s  230 (543)
T 1nir_A          152 SVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESS  230 (543)
T ss_dssp             EEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEEC
T ss_pred             EEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecCCCcceEEeC
Confidence            44445688999999999999999985433 899999999999999999999999997   5566777776555677766 


Q ss_pred             --------EEEEEe-CCCeEEEEEcCCCcEEEEEecC-----------CCCeeEEEEcCCCCEE-EEEcCCCe-------
Q 046394           94 --------LLASIN-KLGQLRYQNVTMGEIVGNFWTG-----------LGRTDVIRVNPFNGVV-SLGHSGGT-------  145 (378)
Q Consensus        94 --------~l~s~~-~d~~i~iwd~~~~~~~~~~~~~-----------~~~v~~~~~s~~~~~l-~~~~~d~~-------  145 (378)
                              ++++++ .+++|.+||..+++++..+..+           ...+..+.++|++..+ ++...++.       
T Consensus       231 p~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~  310 (543)
T 1nir_A          231 KFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYK  310 (543)
T ss_dssp             CSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECT
T ss_pred             CCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEec
Confidence                    466665 5899999999999998888652           2368899999988654 44445554       


Q ss_pred             --------eeecCCCEEEEEEecCCCEEEEEE-CCCeEEEEEcCCceeeeeec-----CCceEEE-EecC-C--------
Q 046394          146 --------MLCHQGPVSALAFHPNGHLMATSG-KDCKIKIWDLRKYEVLQTLP-----GHAKTLD-FSRK-D--------  201 (378)
Q Consensus       146 --------~~~h~~~v~~~~~sp~g~~l~t~~-~d~~i~iwd~~~~~~~~~~~-----~~i~~~~-~sp~-g--------  201 (378)
                              ...+...+.+++|+|+|++|++++ .+++|.+||+.+++++.++.     .+...+. ++|+ |        
T Consensus       311 ~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~  390 (543)
T 1nir_A          311 DIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHL  390 (543)
T ss_dssp             TSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEEEETTTEEEEEEEBS
T ss_pred             CCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCcccCCCCCccEEEeccC
Confidence                    112445567899999999876555 68899999999999988771     1111222 3555 2        


Q ss_pred             ---CccccCCCC-------CceEEEeeccCCcceeeeEEcCCCCeEEEec
Q 046394          202 ---SGDFSGSHN-------YNRYMGYSMVKGYQIGKVSFRPYEDVLGIGH  241 (378)
Q Consensus       202 ---~~~~~~~~~-------~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~  241 (378)
                         ...+|+..+       ...+..+.+ ++..+..+.|+|+|++|.+++
T Consensus       391 ~d~~V~v~d~~~~~~~~~~~~~v~~l~~-~g~~~~~v~~~pdg~~l~v~~  439 (543)
T 1nir_A          391 GDGSISLIGTDPKNHPQYAWKKVAELQG-QGGGSLFIKTHPKSSHLYVDT  439 (543)
T ss_dssp             SSSEEEEEECCTTTCTTTBTSEEEEEEC-SCSCCCCEECCTTCCEEEECC
T ss_pred             CCceEEEEEeCCCCCchhcCeEEEEEEc-CCCCceEEEcCCCCCcEEEec
Confidence               235666655       677888887 777788999999999887776

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.84  E-value=2.7e-20  Score=169.29  Aligned_cols=191  Identities=7%  Similarity=-0.037  Sum_probs=129.2

Q ss_pred             eeeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCC-CEEEEEeCCCcEEEEeCC-CCeEEe------------
Q 046394           16 EKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSG-RYMAAAGCKGYPYFYNRD-GTELHC------------   81 (378)
Q Consensus        16 ~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g-~~l~~~~~dg~i~iwd~~-~~~~~~------------   81 (378)
                      ...+..+.|+++++||+.++..+..+..|...|.+++|+|++ .+|++|+.||.|++||.. +.....            
T Consensus       157 ~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~  236 (393)
T 4gq1_A          157 QVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWL  236 (393)
T ss_dssp             EEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCS
T ss_pred             CEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceE
Confidence            345667789999999999999888899999999999999987 489999999999999943 322111            


Q ss_pred             -------------eccCCCe-eEEEE------EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEc
Q 046394           82 -------------SKEHGEV-LKLQF------LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGH  141 (378)
Q Consensus        82 -------------~~~~~~~-~~l~~------~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  141 (378)
                                   ..+|... .++.|      .+++++.|+++++||+.++.....+..+...+..+.+.|+...+.   
T Consensus       237 ~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~---  313 (393)
T 4gq1_A          237 LTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGIS---  313 (393)
T ss_dssp             EEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEEC---
T ss_pred             EecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEcccccccc---
Confidence                         1234443 67777      899999999999999999888888888888888888888865432   


Q ss_pred             CCCeeeecCCCEEEEEEec--CCCEEEEEECCCeEEEEEcCCceeeeee---cCCceEEEEecCCCccccCCCCCceEEE
Q 046394          142 SGGTMLCHQGPVSALAFHP--NGHLMATSGKDCKIKIWDLRKYEVLQTL---PGHAKTLDFSRKDSGDFSGSHNYNRYMG  216 (378)
Q Consensus       142 ~d~~~~~h~~~v~~~~~sp--~g~~l~t~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~~sp~g~~~~~~~~~~~~~~~  216 (378)
                            .+...+ ...|+|  ++.++++++.||+|+|||+.++.++..+   +.+|.+++|||||++.+.....+..+..
T Consensus       314 ------~~~~~~-~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~Gv~lvr  386 (393)
T 4gq1_A          314 ------LFPSLL-GACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGSVLLTR  386 (393)
T ss_dssp             ------SSCCSS-CCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSEEEEEE
T ss_pred             ------ccCcce-eEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence                  222233 334444  4456777889999999999998887666   5789999999999987666554444333

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.84  E-value=5.8e-18  Score=151.17  Aligned_cols=218  Identities=6%  Similarity=-0.002  Sum_probs=165.5

Q ss_pred             cceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEE-eCCCcEEEEeC-CCCeEEeeccCCC----------eeEE
Q 046394           24 EAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAA-GCKGYPYFYNR-DGTELHCSKEHGE----------VLKL   91 (378)
Q Consensus        24 ~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~-~~dg~i~iwd~-~~~~~~~~~~~~~----------~~~l   91 (378)
                      ++.|.+||..+++....+... ..+.+++|+|+|++++++ ..++.|.+||. ++..+..+..+..          +.++
T Consensus        68 ~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (353)
T 3vgz_A           68 GGVVYRLDPVTLEVTQAIHND-LKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPREL  146 (353)
T ss_dssp             SEEEEEECTTTCCEEEEEEES-SCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEE
T ss_pred             CccEEEEcCCCCeEEEEEecC-CCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceE
Confidence            568999999999988888764 558899999999966655 44789999995 5666666655431          4667


Q ss_pred             EE-----EEEEE--eCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe--------------ee---
Q 046394           92 QF-----LLASI--NKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT--------------ML---  147 (378)
Q Consensus        92 ~~-----~l~s~--~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~--------------~~---  147 (378)
                      .|     .++++  +.++.|.+||+.+++.+..+..+...+.+++|+|+++.+++++.++.              +.   
T Consensus       147 ~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~  226 (353)
T 3vgz_A          147 VADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLD  226 (353)
T ss_dssp             EEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCC
T ss_pred             EECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCC
Confidence            77     34443  35889999999999998888756666889999999999999888776              11   


Q ss_pred             -ecCCCEEEEEEecCCCEEEEEEC-CCeEEEEEcCCceeeeee-cCCceEEEEecCCCc-----------cccCCCCCce
Q 046394          148 -CHQGPVSALAFHPNGHLMATSGK-DCKIKIWDLRKYEVLQTL-PGHAKTLDFSRKDSG-----------DFSGSHNYNR  213 (378)
Q Consensus       148 -~h~~~v~~~~~sp~g~~l~t~~~-d~~i~iwd~~~~~~~~~~-~~~i~~~~~sp~g~~-----------~~~~~~~~~~  213 (378)
                       ++...+.+++|+|+|+++++++. ++.|.+||+.+++.+..+ ......++|+|+|.+           .+|+..+...
T Consensus       227 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~  306 (353)
T 3vgz_A          227 DGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPESLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKV  306 (353)
T ss_dssp             SSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSSCCCEEEETTTTEEEEEETTTTEEEEEETTTTEE
T ss_pred             CCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCceEEECCCCCEEEEEECCCCeEEEEECCCCeE
Confidence             24556788999999998766664 589999999999988887 333467999999984           3445555555


Q ss_pred             EEEeeccCCcceeeeEEcCCCCeEEEecCCC
Q 046394          214 YMGYSMVKGYQIGKVSFRPYEDVLGIGHSMG  244 (378)
Q Consensus       214 ~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g  244 (378)
                      +..+..  ...+.+++|+|+|++|+++..++
T Consensus       307 ~~~~~~--~~~~~~~~~s~dg~~l~v~~~~~  335 (353)
T 3vgz_A          307 VKTFDT--PTHPNSLALSADGKTLYVSVKQK  335 (353)
T ss_dssp             EEEEEC--CSEEEEEEECTTSCEEEEEEECC
T ss_pred             EEEEec--CCCCCeEEEcCCCCEEEEEEccc
Confidence            555543  34688999999998776665553

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.82  E-value=1.6e-17  Score=147.57  Aligned_cols=225  Identities=11%  Similarity=0.078  Sum_probs=149.5

Q ss_pred             eccceeeeeecc-cce-eeEEeecCCCCceEEEEcCCCCEEEEEeCC-CcEEEEeCC---CC--eEEeeccCCCeeEEEE
Q 046394           22 KQEAIAREVDIL-SSR-NQYDIMLPELGPYTLDFTSSGRYMAAAGCK-GYPYFYNRD---GT--ELHCSKEHGEVLKLQF   93 (378)
Q Consensus        22 ~~~~~i~~~d~~-~~~-~~~~l~~~~~~v~~~~~sp~g~~l~~~~~d-g~i~iwd~~---~~--~~~~~~~~~~~~~l~~   93 (378)
                      ..++.|++||+. ++. .......|...+.+++|+|+|++|++++.+ +.|.+|+++   +.  .+..+..+..+..++|
T Consensus        12 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (343)
T 1ri6_A           12 PESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHIST   91 (343)
T ss_dssp             GGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEE
T ss_pred             CCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCCCCcEEEE
Confidence            457899999985 332 222233466789999999999999988886 899999954   33  2334554555688888


Q ss_pred             -----EE-EEEeCCCeEEEEEcC---CCcEEEEEecCCCCeeEEEEcCCCCEEEEEc-CCCe-----------e------
Q 046394           94 -----LL-ASINKLGQLRYQNVT---MGEIVGNFWTGLGRTDVIRVNPFNGVVSLGH-SGGT-----------M------  146 (378)
Q Consensus        94 -----~l-~s~~~d~~i~iwd~~---~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~-----------~------  146 (378)
                           .+ +++..++.|.+||+.   +...+..+.. ...+.+++|+|+++++++++ .++.           +      
T Consensus        92 s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~  170 (343)
T 1ri6_A           92 DHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG-LDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPA  170 (343)
T ss_dssp             CTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECC-CTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE
T ss_pred             cCCCCEEEEEecCCCeEEEEECCCCccccccccccC-CCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeeccc
Confidence                 45 444558999999994   3344555443 35688999999999887776 5555           1      


Q ss_pred             e--e-cCCCEEEEEEecCCCEEEEEE-CCCeEEEEEcCC--cee--eeee---c------CCceEEEEecCCCccc----
Q 046394          147 L--C-HQGPVSALAFHPNGHLMATSG-KDCKIKIWDLRK--YEV--LQTL---P------GHAKTLDFSRKDSGDF----  205 (378)
Q Consensus       147 ~--~-h~~~v~~~~~sp~g~~l~t~~-~d~~i~iwd~~~--~~~--~~~~---~------~~i~~~~~sp~g~~~~----  205 (378)
                      .  . ....+.+++|+|+|+++++++ .++.|.+||+..  +..  ...+   .      ..+..++|+|+|.+.+    
T Consensus       171 ~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~  250 (343)
T 1ri6_A          171 EVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDR  250 (343)
T ss_dssp             EEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEET
T ss_pred             ccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEec
Confidence            0  0 223677899999999776555 789999999953  433  2222   1      1345799999997532    


Q ss_pred             -------cCCC----CCceEEEeeccCCcceeeeEEcCCCCeEEEec-CCCeEEEE
Q 046394          206 -------SGSH----NYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGH-SMGVSGIL  249 (378)
Q Consensus       206 -------~~~~----~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~-~~g~~~~~  249 (378)
                             |+..    ....+..... +. .+.+++|+|+|++|++++ .++.+.+|
T Consensus       251 ~~~~i~v~d~~~~~~~~~~~~~~~~-~~-~~~~~~~s~dg~~l~~~~~~~~~v~v~  304 (343)
T 1ri6_A          251 TASLITVFSVSEDGSVLSKEGFQPT-ET-QPRGFNVDHSGKYLIAAGQKSHHISVY  304 (343)
T ss_dssp             TTTEEEEEEECTTSCCEEEEEEEEC-SS-SCCCEEECTTSSEEEEECTTTCEEEEE
T ss_pred             CCCEEEEEEEcCCCCceEEeeeecC-CC-ccceEEECCCCCEEEEecCCCCeEEEE
Confidence                   2222    1122222322 23 388999999998776665 45555555

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.80  E-value=5.2e-17  Score=153.39  Aligned_cols=241  Identities=11%  Similarity=0.070  Sum_probs=171.2

Q ss_pred             ceeeEEEeccceeeeeec--ccceeeEEeecCCCCceEEEEcC----CCCEEEEEeC-CCcEEEEe-CCCCeEEeeccC-
Q 046394           15 VEKTWRIKQEAIAREVDI--LSSRNQYDIMLPELGPYTLDFTS----SGRYMAAAGC-KGYPYFYN-RDGTELHCSKEH-   85 (378)
Q Consensus        15 ~~~~~~~~~~~~i~~~d~--~~~~~~~~l~~~~~~v~~~~~sp----~g~~l~~~~~-dg~i~iwd-~~~~~~~~~~~~-   85 (378)
                      ....|....++.|.+||+  .+++.+..+.. ...+.+++|||    ||++|++++. +++|.||| .++.++..+..+ 
T Consensus       190 g~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~-g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g  268 (543)
T 1nir_A          190 GRYLLVIGRDARIDMIDLWAKEPTKVAEIKI-GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRG  268 (543)
T ss_dssp             SCEEEEEETTSEEEEEETTSSSCEEEEEEEC-CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCE
T ss_pred             CCEEEEECCCCeEEEEECcCCCCcEEEEEec-CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccC
Confidence            445666677899999999  88888888885 46789999999    9999999885 89999999 566777766542 


Q ss_pred             ---------CC--eeEEEE------EEEEEeCCCeEEEEEcCCCcEEE--EEecCCCCeeEEEEcCCCCEEEEEcC-CCe
Q 046394           86 ---------GE--VLKLQF------LLASINKLGQLRYQNVTMGEIVG--NFWTGLGRTDVIRVNPFNGVVSLGHS-GGT  145 (378)
Q Consensus        86 ---------~~--~~~l~~------~l~s~~~d~~i~iwd~~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~~~~~-d~~  145 (378)
                               .+  +.++.+      ++++...++.|.+||+.+.+.+.  .+. +...+..++|+|+|++|++++. ++.
T Consensus       269 ~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~-~~~~~~~~~~spdg~~l~va~~~~~~  347 (543)
T 1nir_A          269 MTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG-AAPFLHDGGWDSSHRYFMTAANNSNK  347 (543)
T ss_dssp             ECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE-CCSSCCCEEECTTSCEEEEEEGGGTE
T ss_pred             cccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec-cCcCccCceECCCCCEEEEEecCCCe
Confidence                     22  366766      78888899999999998765433  443 4567888999999998776553 444


Q ss_pred             --------------ee----ecCCCEEEEEEecC-CCEEEEEE-CCCeEEEEEcCC-------ceeeeee--c-CCceEE
Q 046394          146 --------------ML----CHQGPVSALAFHPN-GHLMATSG-KDCKIKIWDLRK-------YEVLQTL--P-GHAKTL  195 (378)
Q Consensus       146 --------------~~----~h~~~v~~~~~sp~-g~~l~t~~-~d~~i~iwd~~~-------~~~~~~~--~-~~i~~~  195 (378)
                                    +.    .|.+....+ ++|+ |..+++++ .|++|.|||+.+       ++++.++  + ..+..+
T Consensus       348 v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v  426 (543)
T 1nir_A          348 VAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFI  426 (543)
T ss_dssp             EEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCE
T ss_pred             EEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEE
Confidence                          22    255444443 5787 66677775 689999999998       8888888  3 567889


Q ss_pred             EEecCCCccc-----------------cCCCCCceE-EEe--------eccCCcceeeeEEcCCCCeEEEecCCCeEEEE
Q 046394          196 DFSRKDSGDF-----------------SGSHNYNRY-MGY--------SMVKGYQIGKVSFRPYEDVLGIGHSMGVSGIL  249 (378)
Q Consensus       196 ~~sp~g~~~~-----------------~~~~~~~~~-~~~--------~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~  249 (378)
                      .|+|+|++..                 |+..+.... ..+        .. +...+..+.|+|+|+.|.++...+     
T Consensus       427 ~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~g~~~~~s~~~~-----  500 (543)
T 1nir_A          427 KTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGE-GAKRVVQPEYNKRGDEVWFSVWNG-----  500 (543)
T ss_dssp             ECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCS-SCCEEEEEEECSSSSEEEEEEECC-----
T ss_pred             EcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCC-CCCceEeccCCCCCCEEEEEeecC-----
Confidence            9999987633                 333333333 222        12 467789999999998775442110     


Q ss_pred             EcCCCCcccccccCCCc
Q 046394          250 IPGSGEPNFDSWVANPF  266 (378)
Q Consensus       250 ~~~s~d~~i~~w~~~~~  266 (378)
                        .+.|+.|.+||....
T Consensus       501 --~~~~~~i~v~D~~t~  515 (543)
T 1nir_A          501 --KNDSSALVVVDDKTL  515 (543)
T ss_dssp             --TTSCCEEEEEETTTT
T ss_pred             --CCCCCeEEEEECCCc
Confidence              124566777765443

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.79  E-value=5.9e-17  Score=143.48  Aligned_cols=229  Identities=8%  Similarity=-0.072  Sum_probs=160.1

Q ss_pred             eEEEeccceeeeeecccceeeEEeecCCC--CceEEEEcCCCCEEEE-EeCCCcEEEEeC-CCCeEEeeccCC------C
Q 046394           18 TWRIKQEAIAREVDILSSRNQYDIMLPEL--GPYTLDFTSSGRYMAA-AGCKGYPYFYNR-DGTELHCSKEHG------E   87 (378)
Q Consensus        18 ~~~~~~~~~i~~~d~~~~~~~~~l~~~~~--~v~~~~~sp~g~~l~~-~~~dg~i~iwd~-~~~~~~~~~~~~------~   87 (378)
                      .+....++.|.+||+.+++.+..+.....  .+.+++|+|+|+++++ ++.++.|.+||. ++..+..+....      .
T Consensus         4 ~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~   83 (337)
T 1pby_B            4 ILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKS   83 (337)
T ss_dssp             EEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEEC
T ss_pred             EEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccccc
Confidence            44556789999999999998888775432  5889999999987654 455789999995 566666555322      3


Q ss_pred             eeEEEE-----EEEEEe------------CCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe-----
Q 046394           88 VLKLQF-----LLASIN------------KLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT-----  145 (378)
Q Consensus        88 ~~~l~~-----~l~s~~------------~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~-----  145 (378)
                      +..++|     .+++++            .++.|.+||+.+++.+..+.. ...+.+++|+|++++|++++..-.     
T Consensus        84 ~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~i~~~d~~  162 (337)
T 1pby_B           84 LFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGLGRDLHVMDPE  162 (337)
T ss_dssp             TTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEESSSEEEEETT
T ss_pred             ccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEeCCeEEEEECC
Confidence            467788     565554            579999999999988877765 456788999999998887732111     


Q ss_pred             -------eeecCCCEEEEEEecCCCEEEEEECC-C-----------------------eEEEEEcCCceeeeee-----c
Q 046394          146 -------MLCHQGPVSALAFHPNGHLMATSGKD-C-----------------------KIKIWDLRKYEVLQTL-----P  189 (378)
Q Consensus       146 -------~~~h~~~v~~~~~sp~g~~l~t~~~d-~-----------------------~i~iwd~~~~~~~~~~-----~  189 (378)
                             +..+. ....+.|+|+|.+++.++.+ +                       .|.+||+.+++.. .+     .
T Consensus       163 ~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~~~~~  240 (337)
T 1pby_B          163 AGTLVEDKPIQS-WEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-MREVRIMD  240 (337)
T ss_dssp             TTEEEEEECSTT-TTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EEEEEECS
T ss_pred             CCcEeeeeeccc-cCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce-EeecCCCC
Confidence                   11111 01123688888866554432 2                       4689999998875 33     2


Q ss_pred             CCceEEEEecCCCc--------cccCCCCCceEEEeeccCCcceeeeEEcCCCCeEEEecCCCeEEEEEc
Q 046394          190 GHAKTLDFSRKDSG--------DFSGSHNYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILIP  251 (378)
Q Consensus       190 ~~i~~~~~sp~g~~--------~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~~  251 (378)
                      ..+.+++|+|+|.+        .+|+..+...+..+..  ...+.+++|+|+|++|++++.++.+.+|..
T Consensus       241 ~~~~~~~~s~dg~~l~~~~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~  308 (337)
T 1pby_B          241 VFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRVPL--PHSYYSVNVSTDGSTVWLGGALGDLAAYDA  308 (337)
T ss_dssp             SCEEEEEECTTSSEEEEEESEEEEEETTTTEEEEEEEC--SSCCCEEEECTTSCEEEEESBSSEEEEEET
T ss_pred             CceeeEEECCCCCEEEEeCCeEEEEECCCCcCcceecC--CCceeeEEECCCCCEEEEEcCCCcEEEEEC
Confidence            46788999999975        4556556655555543  345789999999988877766665555543

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.79  E-value=6.5e-18  Score=165.68  Aligned_cols=228  Identities=9%  Similarity=0.011  Sum_probs=156.7

Q ss_pred             eccceeeeeecccceeeEEeecCCC---CceEEEEcCCCCEEEEEeCC---------CcEEEEeCCCCeEEeecc---CC
Q 046394           22 KQEAIAREVDILSSRNQYDIMLPEL---GPYTLDFTSSGRYMAAAGCK---------GYPYFYNRDGTELHCSKE---HG   86 (378)
Q Consensus        22 ~~~~~i~~~d~~~~~~~~~l~~~~~---~v~~~~~sp~g~~l~~~~~d---------g~i~iwd~~~~~~~~~~~---~~   86 (378)
                      ..++.+++||+.+++....+..|..   .|.+++|||||++|++++.+         +.|++||..+.....+..   |.
T Consensus        34 ~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~  113 (723)
T 1xfd_A           34 EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSN  113 (723)
T ss_dssp             CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCS
T ss_pred             eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCcccc
Confidence            5678999999999998888877764   49999999999999999774         778899965544444443   32


Q ss_pred             C-eeEEEE-----EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCe------------------eEEEEcCCCCEEEEEcC
Q 046394           87 E-VLKLQF-----LLASINKLGQLRYQNVTMGEIVGNFWTGLGRT------------------DVIRVNPFNGVVSLGHS  142 (378)
Q Consensus        87 ~-~~~l~~-----~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v------------------~~~~~s~~~~~l~~~~~  142 (378)
                      . +..++|     .|+.++. +.|++||+.+++.......+...+                  .+++|||||+.|++++.
T Consensus       114 ~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~  192 (723)
T 1xfd_A          114 AKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAI  192 (723)
T ss_dssp             CCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEE
T ss_pred             ccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEE
Confidence            2 366778     6676665 799999999888766655443333                  78999999999988764


Q ss_pred             CC----------------------------------e--------------eeec------CCCEEEEEEecCCCEEEEE
Q 046394          143 GG----------------------------------T--------------MLCH------QGPVSALAFHPNGHLMATS  168 (378)
Q Consensus       143 d~----------------------------------~--------------~~~h------~~~v~~~~~sp~g~~l~t~  168 (378)
                      ++                                  .              +..+      ...+.+++|+|||++|++.
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~  272 (723)
T 1xfd_A          193 NDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTW  272 (723)
T ss_dssp             ECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEE
T ss_pred             CCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEE
Confidence            42                                  1              1111      4567889999999988776


Q ss_pred             ECC----CeEEEEEcCCceeeeee--c--CCc----eEEEEecCCCccccC-C-CCC-----ceEEEee---cc------
Q 046394          169 GKD----CKIKIWDLRKYEVLQTL--P--GHA----KTLDFSRKDSGDFSG-S-HNY-----NRYMGYS---MV------  220 (378)
Q Consensus       169 ~~d----~~i~iwd~~~~~~~~~~--~--~~i----~~~~~sp~g~~~~~~-~-~~~-----~~~~~~~---~~------  220 (378)
                      +..    ..|++||+.++++...+  +  ..+    ..++|||||+..++. . ...     ..+..+.   ..      
T Consensus       273 ~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~  352 (723)
T 1xfd_A          273 LNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQ  352 (723)
T ss_dssp             EETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCC
T ss_pred             EcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCcccee
Confidence            533    57999999998876654  2  233    389999999975542 1 111     1122221   00      


Q ss_pred             ----CCcceee-eEEcCCCCeEEEecCC---CeEEEEE
Q 046394          221 ----KGYQIGK-VSFRPYEDVLGIGHSM---GVSGILI  250 (378)
Q Consensus       221 ----~~~~v~~-~~~sp~g~~l~~~~~~---g~~~~~~  250 (378)
                          +...+.. ++|+|||+.|++.+.+   +...+|.
T Consensus       353 ~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~  390 (723)
T 1xfd_A          353 SITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYS  390 (723)
T ss_dssp             BSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEE
T ss_pred             EeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEE
Confidence                1122333 6899999988765544   4455554

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.79  E-value=1.2e-17  Score=164.34  Aligned_cols=231  Identities=8%  Similarity=0.017  Sum_probs=161.3

Q ss_pred             eeeEEEec-cc-----eeeeeecccceeeEEeecCCCC------------------------ceEEEEcCCCCEEEEEeC
Q 046394           16 EKTWRIKQ-EA-----IAREVDILSSRNQYDIMLPELG------------------------PYTLDFTSSGRYMAAAGC   65 (378)
Q Consensus        16 ~~~~~~~~-~~-----~i~~~d~~~~~~~~~l~~~~~~------------------------v~~~~~sp~g~~l~~~~~   65 (378)
                      ...+.... ++     .|.+||+.+++....+..+...                        +.+++|||||++|++++.
T Consensus        49 ~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~  128 (741)
T 2ecf_A           49 SRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSPDAQRLLFPLG  128 (741)
T ss_dssp             SEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEECTTSSEEEEEET
T ss_pred             CEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECCCCCEEEEEeC
Confidence            34444554 66     8999999999877666654333                        789999999999999986


Q ss_pred             CCcEEEEeCCCC---eEEeeccCCCe-eEEEE-----EEEEEeCCCeEEEEEcCCCcEEEEEecCCCC------------
Q 046394           66 KGYPYFYNRDGT---ELHCSKEHGEV-LKLQF-----LLASINKLGQLRYQNVTMGEIVGNFWTGLGR------------  124 (378)
Q Consensus        66 dg~i~iwd~~~~---~~~~~~~~~~~-~~l~~-----~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~------------  124 (378)
                       +.|++||..+.   .+..+..+... ..++|     .|++++ ++.|++||+.+++.......+...            
T Consensus       129 -~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~  206 (741)
T 2ecf_A          129 -GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADE  206 (741)
T ss_dssp             -TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHH
T ss_pred             -CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCCccceeccccceeeee
Confidence             89999997665   66667777554 88999     677766 468999999988776544433322            


Q ss_pred             ----eeEEEEcCCCCEEEEEcCCC---------------------------------e-----ee------------ecC
Q 046394          125 ----TDVIRVNPFNGVVSLGHSGG---------------------------------T-----ML------------CHQ  150 (378)
Q Consensus       125 ----v~~~~~s~~~~~l~~~~~d~---------------------------------~-----~~------------~h~  150 (378)
                          +..++|||||+.|++++.++                                 .     +.            .|.
T Consensus       207 ~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~  286 (741)
T 2ecf_A          207 EMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQD  286 (741)
T ss_dssp             HSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSS
T ss_pred             ccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcc
Confidence                47899999999888876543                                 1     00            245


Q ss_pred             CCEEEEEEecCCCEEEEEEC-----CCeEEEEEcCCceeeeee--cC-----CceEEEEecCCCccccCCCCC-ce----
Q 046394          151 GPVSALAFHPNGHLMATSGK-----DCKIKIWDLRKYEVLQTL--PG-----HAKTLDFSRKDSGDFSGSHNY-NR----  213 (378)
Q Consensus       151 ~~v~~~~~sp~g~~l~t~~~-----d~~i~iwd~~~~~~~~~~--~~-----~i~~~~~sp~g~~~~~~~~~~-~~----  213 (378)
                      ..+.+++| |||++|++++.     +..|++||+.++++...+  +.     .+..++|+|||++.+.....+ ..    
T Consensus       287 ~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~  365 (741)
T 2ecf_A          287 IYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRI  365 (741)
T ss_dssp             EEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEE
T ss_pred             eEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEE
Confidence            56889999 99999987764     568999999998876665  22     457899999998422211111 01    


Q ss_pred             -----EEEeeccCCcceeee-EEcCCCCeEEE-ecCCC--eEEEEE
Q 046394          214 -----YMGYSMVKGYQIGKV-SFRPYEDVLGI-GHSMG--VSGILI  250 (378)
Q Consensus       214 -----~~~~~~~~~~~v~~~-~~sp~g~~l~~-~~~~g--~~~~~~  250 (378)
                           ...+.. +...|..+ .|+|+|+.|++ ++.++  .+.+|.
T Consensus       366 ~~~~~~~~l~~-~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~  410 (741)
T 2ecf_A          366 DSKGKAAALTH-GNWSVDELLAVDEKAGLAYFRAGIESARESQIYA  410 (741)
T ss_dssp             CSSSCEEESCC-SSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEE
T ss_pred             cCCCCeeeeee-cceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEE
Confidence                 223333 45567776 59999987754 44443  444553

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.77  E-value=2.8e-16  Score=140.19  Aligned_cols=224  Identities=12%  Similarity=0.101  Sum_probs=141.5

Q ss_pred             ceeeeeec--ccceeeE-EeecCCCCceEEEEcCCCCEEEEEeC---CCcEEEEeCCCCe---EEeeccCCC-eeEEEE-
Q 046394           25 AIAREVDI--LSSRNQY-DIMLPELGPYTLDFTSSGRYMAAAGC---KGYPYFYNRDGTE---LHCSKEHGE-VLKLQF-   93 (378)
Q Consensus        25 ~~i~~~d~--~~~~~~~-~l~~~~~~v~~~~~sp~g~~l~~~~~---dg~i~iwd~~~~~---~~~~~~~~~-~~~l~~-   93 (378)
                      ..+.+|++  .+++... ....+...+..++|+|+|+ |++++.   ++.|.+|++.+..   +..+..+.. +..++| 
T Consensus        16 ~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~s   94 (347)
T 3hfq_A           16 QGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVD   94 (347)
T ss_dssp             CEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEE
T ss_pred             CCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEEC
Confidence            34555554  4454332 3344557788999999999 555544   6899999964433   333333443 488888 


Q ss_pred             ----EEEEEe-CCCeEEEEEcC-CCc--EEEEEecC---------CCCeeEEEEcCCCCEEEEEcCCCe-----e-----
Q 046394           94 ----LLASIN-KLGQLRYQNVT-MGE--IVGNFWTG---------LGRTDVIRVNPFNGVVSLGHSGGT-----M-----  146 (378)
Q Consensus        94 ----~l~s~~-~d~~i~iwd~~-~~~--~~~~~~~~---------~~~v~~~~~s~~~~~l~~~~~d~~-----~-----  146 (378)
                          ++++++ .++.|.+|++. ++.  .+..+...         ...+.+++|+|+|+++++...++.     +     
T Consensus        95 pdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~  174 (347)
T 3hfq_A           95 EARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQ  174 (347)
T ss_dssp             TTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSC
T ss_pred             CCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCc
Confidence                566665 78999999996 333  33333321         124788999999996665555554     0     


Q ss_pred             -------eec-CCCEEEEEEecCCCEEEE-EECCCeEEEEEcCC--cee--eeee---c------CCceEEEEecCCCcc
Q 046394          147 -------LCH-QGPVSALAFHPNGHLMAT-SGKDCKIKIWDLRK--YEV--LQTL---P------GHAKTLDFSRKDSGD  204 (378)
Q Consensus       147 -------~~h-~~~v~~~~~sp~g~~l~t-~~~d~~i~iwd~~~--~~~--~~~~---~------~~i~~~~~sp~g~~~  204 (378)
                             ..+ ...+..++|+|+|+++++ +..++.|.+|++..  ++.  +..+   .      ..+..++|+|||++.
T Consensus       175 ~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l  254 (347)
T 3hfq_A          175 LSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFL  254 (347)
T ss_dssp             EEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEE
T ss_pred             EEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEE
Confidence                   111 225678999999997655 55688999999874  543  2233   1      347889999999853


Q ss_pred             -----------ccCCC---CCceEEEeeccCCcceeeeEEcCCCCeEEEecCC-CeEEEEE
Q 046394          205 -----------FSGSH---NYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSM-GVSGILI  250 (378)
Q Consensus       205 -----------~~~~~---~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~-g~~~~~~  250 (378)
                                 +|+..   ....+..... ++..+..++|+|||++|++++.+ +.+.+|.
T Consensus       255 ~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~  314 (347)
T 3hfq_A          255 YVSNRGYNTLAVFAVTADGHLTLIQQIST-EGDFPRDFDLDPTEAFVVVVNQNTDNATLYA  314 (347)
T ss_dssp             EEEEETTTEEEEEEECGGGCEEEEEEEEC-SSSCCCEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             EEEeCCCCEEEEEEECCCCcEEEeEEEec-CCCCcCeEEECCCCCEEEEEEcCCCcEEEEE
Confidence                       22221   1122233333 45568899999999987776543 5555553

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.77  E-value=3.6e-16  Score=139.44  Aligned_cols=202  Identities=12%  Similarity=0.099  Sum_probs=148.5

Q ss_pred             CCceEEEEcCCCCEEEEEeC-------CCcEEEEeC-CCCeEEeeccCCCeeEEEE------EEEEEeCCCeEEEEEcCC
Q 046394           46 LGPYTLDFTSSGRYMAAAGC-------KGYPYFYNR-DGTELHCSKEHGEVLKLQF------LLASINKLGQLRYQNVTM  111 (378)
Q Consensus        46 ~~v~~~~~sp~g~~l~~~~~-------dg~i~iwd~-~~~~~~~~~~~~~~~~l~~------~l~s~~~d~~i~iwd~~~  111 (378)
                      ..+..++|+|+|++|++++.       ++.|.+||. ++..+..+.....+..+.|      ++++...++.|.+||+.+
T Consensus        41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~  120 (353)
T 3vgz_A           41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDAKT  120 (353)
T ss_dssp             SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEETTTTEEEEEETTT
T ss_pred             cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcceEEECCCCCEEEEEecCCCEEEEEeCCC
Confidence            57889999999999888874       468999994 5666777766555677777      566667789999999999


Q ss_pred             CcEEEEEecCCCC---------eeEEEEcCCCCEEEEEc--CCCe--------------eeecCCCEEEEEEecCCCEEE
Q 046394          112 GEIVGNFWTGLGR---------TDVIRVNPFNGVVSLGH--SGGT--------------MLCHQGPVSALAFHPNGHLMA  166 (378)
Q Consensus       112 ~~~~~~~~~~~~~---------v~~~~~s~~~~~l~~~~--~d~~--------------~~~h~~~v~~~~~sp~g~~l~  166 (378)
                      ++.+..+..+...         +.+++|+|+++.+++++  .++.              +..+...+.+++|+|+|++++
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~  200 (353)
T 3vgz_A          121 GEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLY  200 (353)
T ss_dssp             CCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEE
T ss_pred             CeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEE
Confidence            9998888765422         68899999999877766  3443              222445578899999999999


Q ss_pred             EEECCCeEEEEEcCCceeeeee-c------CCceEEEEecCCCc-----------cccCCCCCceEEEeeccCCcceeee
Q 046394          167 TSGKDCKIKIWDLRKYEVLQTL-P------GHAKTLDFSRKDSG-----------DFSGSHNYNRYMGYSMVKGYQIGKV  228 (378)
Q Consensus       167 t~~~d~~i~iwd~~~~~~~~~~-~------~~i~~~~~sp~g~~-----------~~~~~~~~~~~~~~~~~~~~~v~~~  228 (378)
                      +++.++.|.+||+.+++.+..+ .      ..+..++|+|+|.+           .+|+..+...+..+.. . . ...+
T Consensus       201 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~-~-~-~~~~  277 (353)
T 3vgz_A          201 TTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAA-P-E-SLAV  277 (353)
T ss_dssp             EECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEEC-S-S-CCCE
T ss_pred             EEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEc-C-C-CceE
Confidence            9999999999999999988776 1      23567999999985           3344444555444443 1 2 3578


Q ss_pred             EEcCCCCeEEEec-CCCeEEEEE
Q 046394          229 SFRPYEDVLGIGH-SMGVSGILI  250 (378)
Q Consensus       229 ~~sp~g~~l~~~~-~~g~~~~~~  250 (378)
                      .|+|+|+.|++++ .++.+.+|.
T Consensus       278 ~~s~dg~~l~v~~~~~~~v~~~d  300 (353)
T 3vgz_A          278 LFNPARNEAYVTHRQAGKVSVID  300 (353)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEE
T ss_pred             EECCCCCEEEEEECCCCeEEEEE
Confidence            9999998554433 455544443

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.76  E-value=2.2e-17  Score=151.80  Aligned_cols=131  Identities=11%  Similarity=0.120  Sum_probs=97.7

Q ss_pred             CCCCceEEEEcCCCCEEE----EEeCCCcEEEEeCCC---------C---eEEeeccCCCe-eEEEE------EEEEEeC
Q 046394           44 PELGPYTLDFTSSGRYMA----AAGCKGYPYFYNRDG---------T---ELHCSKEHGEV-LKLQF------LLASINK  100 (378)
Q Consensus        44 ~~~~v~~~~~sp~g~~l~----~~~~dg~i~iwd~~~---------~---~~~~~~~~~~~-~~l~~------~l~s~~~  100 (378)
                      +...|.+++|+|+|++|+    +|+.|+.|+|||...         .   .+..+.+|... .+++|      +|++++.
T Consensus        91 ~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~  170 (434)
T 2oit_A           91 MKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLA  170 (434)
T ss_dssp             CSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEET
T ss_pred             CCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEEC
Confidence            456799999999999999    778899999999421         1   14556677765 99999      8999999


Q ss_pred             CCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCeeeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcC
Q 046394          101 LGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGTMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLR  180 (378)
Q Consensus       101 d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~  180 (378)
                      ||+|++||++++..+....                            +|...|.+++|+|+|++|++|+.||+|++||++
T Consensus       171 Dg~v~iwD~~~~~~~~~~~----------------------------~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~  222 (434)
T 2oit_A          171 DGSIAVLQVTETVKVCATL----------------------------PSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT  222 (434)
T ss_dssp             TSCEEEEEESSSEEEEEEE----------------------------CGGGCEEEEEECTTSSCEEEEETTSCEEEECTT
T ss_pred             CCeEEEEEcCCCcceeecc----------------------------CCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC
Confidence            9999999999886554443                            456677777777777777777778888888776


Q ss_pred             Cceeeeee--c----C----CceEEEEecCCCc
Q 046394          181 KYEVLQTL--P----G----HAKTLDFSRKDSG  203 (378)
Q Consensus       181 ~~~~~~~~--~----~----~i~~~~~sp~g~~  203 (378)
                       +.....+  +    .    .+.+++|++++.+
T Consensus       223 -~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~  254 (434)
T 2oit_A          223 -LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVF  254 (434)
T ss_dssp             -CCEEEEECCCTTCCTTSCEEEEEEEEEETTEE
T ss_pred             -CcccccccCCcccCCCCceeEEEEEEecCceE
Confidence             4444333  1    1    5677777776554

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.76  E-value=6.1e-17  Score=158.37  Aligned_cols=221  Identities=9%  Similarity=0.067  Sum_probs=146.2

Q ss_pred             eeEEEeccceeeeeecccceee-EEeecCC-----------------CCceEEEEcCCCCEEEEEeCCCcEEEEeCCCCe
Q 046394           17 KTWRIKQEAIAREVDILSSRNQ-YDIMLPE-----------------LGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTE   78 (378)
Q Consensus        17 ~~~~~~~~~~i~~~d~~~~~~~-~~l~~~~-----------------~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~   78 (378)
                      ..+....++ | +||+.+++.+ ..+..|.                 ..|.+++|||| ..++.+. ++.|++||..+..
T Consensus        37 ~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~  112 (706)
T 2z3z_A           37 NYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFT-QGGLVGFDMLARK  112 (706)
T ss_dssp             EEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEEE-TTEEEEEETTTTE
T ss_pred             eEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEEE-CCEEEEEECCCCc
Confidence            444445556 7 9999999873 3333332                 56999999999 6666654 5899999976666


Q ss_pred             EEeeccCCC-eeEEEE-----EEEEEeCCCeEEEEEcCC-----CcEEEEEecCCCC--------------eeEEEEcCC
Q 046394           79 LHCSKEHGE-VLKLQF-----LLASINKLGQLRYQNVTM-----GEIVGNFWTGLGR--------------TDVIRVNPF  133 (378)
Q Consensus        79 ~~~~~~~~~-~~~l~~-----~l~s~~~d~~i~iwd~~~-----~~~~~~~~~~~~~--------------v~~~~~s~~  133 (378)
                      ...+..+.. +.+++|     .|+++ .|+.|++||+.+     ++.......+...              +.+++||||
T Consensus       113 ~~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpD  191 (706)
T 2z3z_A          113 VTYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPK  191 (706)
T ss_dssp             EEEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTT
T ss_pred             eEEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCC
Confidence            666655554 477888     66664 679999999998     7766544333332              488999999


Q ss_pred             CCEEEEEcCC-------------------------------Ce---------------e---eecCCCEEEEEEecCCCE
Q 046394          134 NGVVSLGHSG-------------------------------GT---------------M---LCHQGPVSALAFHPNGHL  164 (378)
Q Consensus       134 ~~~l~~~~~d-------------------------------~~---------------~---~~h~~~v~~~~~sp~g~~  164 (378)
                      |++|++++.|                               +.               +   ..|...+.+++|+|||++
T Consensus       192 g~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~  271 (706)
T 2z3z_A          192 GSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENI  271 (706)
T ss_dssp             SSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSE
T ss_pred             CCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCE
Confidence            9999988721                               11               1   135567899999999999


Q ss_pred             EEEEECCC-----eEEEEEcCCceeeeee----c-C---CceEEEEec--CCCccccCCC-----------CCceEEEee
Q 046394          165 MATSGKDC-----KIKIWDLRKYEVLQTL----P-G---HAKTLDFSR--KDSGDFSGSH-----------NYNRYMGYS  218 (378)
Q Consensus       165 l~t~~~d~-----~i~iwd~~~~~~~~~~----~-~---~i~~~~~sp--~g~~~~~~~~-----------~~~~~~~~~  218 (378)
                      |++++.++     .|.+||+.+++....+    . .   .+.+++|+|  ||.+.+....           .......+.
T Consensus       272 l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~  351 (706)
T 2z3z_A          272 LYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVT  351 (706)
T ss_dssp             EEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECC
T ss_pred             EEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecC
Confidence            99988775     8999999998433333    1 1   246789999  9875322211           222223333


Q ss_pred             ccCCcceee-eEEcCCCCeEEEecCC
Q 046394          219 MVKGYQIGK-VSFRPYEDVLGIGHSM  243 (378)
Q Consensus       219 ~~~~~~v~~-~~~sp~g~~l~~~~~~  243 (378)
                      . +...+.+ +.|+|+|+.|++++.+
T Consensus       352 ~-~~~~v~~~~~~spdg~~l~~~~~~  376 (706)
T 2z3z_A          352 K-GEWEVTNFAGFDPKGTRLYFESTE  376 (706)
T ss_dssp             C-SSSCEEEEEEECTTSSEEEEEESS
T ss_pred             C-CCeEEEeeeEEcCCCCEEEEEecC
Confidence            3 4455666 7999999877655443

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.76  E-value=3.2e-17  Score=161.20  Aligned_cols=203  Identities=11%  Similarity=0.031  Sum_probs=146.6

Q ss_pred             CCCceEEEEcCCCCEEEEEeC-CC-----cEEEEeCC-CCeEEeeccCC-------------------------CeeEEE
Q 046394           45 ELGPYTLDFTSSGRYMAAAGC-KG-----YPYFYNRD-GTELHCSKEHG-------------------------EVLKLQ   92 (378)
Q Consensus        45 ~~~v~~~~~sp~g~~l~~~~~-dg-----~i~iwd~~-~~~~~~~~~~~-------------------------~~~~l~   92 (378)
                      ...+.+++|||||++|++++. |+     .|++||.. +.....+..+.                         .+.+++
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  115 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ  115 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence            457899999999999999998 88     89999964 44444443321                         136778


Q ss_pred             E-----EEEEEeCCCeEEEEEcCCCc--EEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe-------------eeecCCC
Q 046394           93 F-----LLASINKLGQLRYQNVTMGE--IVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT-------------MLCHQGP  152 (378)
Q Consensus        93 ~-----~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~-------------~~~h~~~  152 (378)
                      |     .|++++. +.|.+||+.++.  .+..+..+...+.+++|||||++|++++.+..             ...+...
T Consensus       116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~~~i~~~d~~~g~~~~~~~~~~~~  194 (741)
T 2ecf_A          116 WSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRGRNLWVIDLASGRQMQLTADGSTT  194 (741)
T ss_dssp             ECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEETTEEEEEETTTTEEEECCCCCCSS
T ss_pred             ECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeCCcEEEEecCCCCEEEeccCCccc
Confidence            8     6777765 999999998872  33455567788999999999999998875433             1112221


Q ss_pred             ----------------EEEEEEecCCCEEEEEECCC---------------------------------eEEEEEcCC-c
Q 046394          153 ----------------VSALAFHPNGHLMATSGKDC---------------------------------KIKIWDLRK-Y  182 (378)
Q Consensus       153 ----------------v~~~~~sp~g~~l~t~~~d~---------------------------------~i~iwd~~~-~  182 (378)
                                      +.+++|||||++|++++.|+                                 .|.+||+.+ +
T Consensus       195 ~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~  274 (741)
T 2ecf_A          195 IGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQA  274 (741)
T ss_dssp             EEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTC
T ss_pred             eeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCC
Confidence                            47799999999999988765                                 889999988 7


Q ss_pred             eeeeee-----cCCceEEEEecCCCccc---------------cCCCCCceEEEeeccCCc----ceeeeEEcCCCCeEE
Q 046394          183 EVLQTL-----PGHAKTLDFSRKDSGDF---------------SGSHNYNRYMGYSMVKGY----QIGKVSFRPYEDVLG  238 (378)
Q Consensus       183 ~~~~~~-----~~~i~~~~~sp~g~~~~---------------~~~~~~~~~~~~~~~~~~----~v~~~~~sp~g~~l~  238 (378)
                      +.....     ...+.+++| |||.+.+               |+..++........ +..    .+.++.|+|||++++
T Consensus       275 ~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~-~~~~~~~~~~~~~~spdg~~~~  352 (741)
T 2ecf_A          275 QTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHE-TSPTWVPLHNSLRFLDDGSILW  352 (741)
T ss_dssp             CCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEE-ECSSCCCCCSCCEECTTSCEEE
T ss_pred             ceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEc-CCCCcCCcCCceEECCCCeEEE
Confidence            765433     245789999 9998533               33334444433333 222    456899999999988


Q ss_pred             EecCCCeEEEEE
Q 046394          239 IGHSMGVSGILI  250 (378)
Q Consensus       239 ~~~~~g~~~~~~  250 (378)
                      +++.+|...+|.
T Consensus       353 ~~~~~g~~~l~~  364 (741)
T 2ecf_A          353 SSERTGFQHLYR  364 (741)
T ss_dssp             EECTTSSCEEEE
T ss_pred             EecCCCccEEEE
Confidence            888888666654

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.75  E-value=1.7e-16  Score=155.23  Aligned_cols=224  Identities=11%  Similarity=0.093  Sum_probs=156.3

Q ss_pred             eeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCC------CCeEEeeccCCC---
Q 046394           17 KTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRD------GTELHCSKEHGE---   87 (378)
Q Consensus        17 ~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~------~~~~~~~~~~~~---   87 (378)
                      +.+.+..++.+.+||+.+++.. .+..+...+.+++|||||++|+++ .++.|++||..      +........+..   
T Consensus        93 ~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~  170 (706)
T 2z3z_A           93 GLVVLFTQGGLVGFDMLARKVT-YLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLV  170 (706)
T ss_dssp             TEEEEEETTEEEEEETTTTEEE-EEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEE
T ss_pred             CeEEEEECCEEEEEECCCCceE-EccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeE
Confidence            4555666799999999888654 455566788999999999999985 67899999965      444443333322   


Q ss_pred             ------------eeEEEE-----EEEEEe---------------------------------CCCeEEEEEcCCCcEEEE
Q 046394           88 ------------VLKLQF-----LLASIN---------------------------------KLGQLRYQNVTMGEIVGN  117 (378)
Q Consensus        88 ------------~~~l~~-----~l~s~~---------------------------------~d~~i~iwd~~~~~~~~~  117 (378)
                                  +.++.|     .|++++                                 .+..|.+||+.+++....
T Consensus       171 ~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~  250 (706)
T 2z3z_A          171 YGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYL  250 (706)
T ss_dssp             ESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEEC
T ss_pred             cccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEee
Confidence                        367888     677766                                 457899999998876544


Q ss_pred             Ee--cCCCCeeEEEEcCCCCEEEEEcCCC-----e--------------ee--ecCC---CEEEEEEec--CCCEEEEEE
Q 046394          118 FW--TGLGRTDVIRVNPFNGVVSLGHSGG-----T--------------ML--CHQG---PVSALAFHP--NGHLMATSG  169 (378)
Q Consensus       118 ~~--~~~~~v~~~~~s~~~~~l~~~~~d~-----~--------------~~--~h~~---~v~~~~~sp--~g~~l~t~~  169 (378)
                      ..  .+...+.+++|+|||+.|++++.++     .              +.  .+..   .+.+++|+|  +|+++++++
T Consensus       251 ~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~  330 (706)
T 2z3z_A          251 QTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSR  330 (706)
T ss_dssp             CCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEEC
T ss_pred             ccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEc
Confidence            32  3456789999999999888876554     1              11  1111   235679999  999999999


Q ss_pred             CCCeEEEEEcC-Cceeeeee--c-CCceE-EEEecCCCccccCCCCC----ceEEEeec--------cCCcceeeeEEcC
Q 046394          170 KDCKIKIWDLR-KYEVLQTL--P-GHAKT-LDFSRKDSGDFSGSHNY----NRYMGYSM--------VKGYQIGKVSFRP  232 (378)
Q Consensus       170 ~d~~i~iwd~~-~~~~~~~~--~-~~i~~-~~~sp~g~~~~~~~~~~----~~~~~~~~--------~~~~~v~~~~~sp  232 (378)
                      .|+.++||++. ++..+..+  + ..+.+ ++|+|+|...+......    ..+..+..        .+...+.+++|+|
T Consensus       331 ~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~sp  410 (706)
T 2z3z_A          331 RDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKTKDLTPESGMHRTQLSP  410 (706)
T ss_dssp             TTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCCEESCCSSSEEEEEECT
T ss_pred             cCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCceeccCCCceEEEEECC
Confidence            99999999886 56666666  2 34555 79999998643322111    12222211        1345688999999


Q ss_pred             CCCeEEEecC
Q 046394          233 YEDVLGIGHS  242 (378)
Q Consensus       233 ~g~~l~~~~~  242 (378)
                      ||++|+++..
T Consensus       411 dg~~l~~~~~  420 (706)
T 2z3z_A          411 DGSAIIDIFQ  420 (706)
T ss_dssp             TSSEEEEEEE
T ss_pred             CCCEEEEEec
Confidence            9998876643

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.75  E-value=9.3e-17  Score=139.17  Aligned_cols=189  Identities=12%  Similarity=0.055  Sum_probs=140.6

Q ss_pred             eEEEeccceeeeeeccc-ceeeEEeecCC-CCceEEEEcCCCCEEEEEeC--CCcEEEE--eCCCCeEEeeccCCCeeEE
Q 046394           18 TWRIKQEAIAREVDILS-SRNQYDIMLPE-LGPYTLDFTSSGRYMAAAGC--KGYPYFY--NRDGTELHCSKEHGEVLKL   91 (378)
Q Consensus        18 ~~~~~~~~~i~~~d~~~-~~~~~~l~~~~-~~v~~~~~sp~g~~l~~~~~--dg~i~iw--d~~~~~~~~~~~~~~~~~l   91 (378)
                      .+....++.|.+||+.+ ++.......|. ..+.+++|+|+|++|++++.  ++.+.||  +..+.....+..+..+..+
T Consensus        55 ~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  134 (297)
T 2ojh_A           55 YLLLNSEGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPRLMTKNLPSYWH  134 (297)
T ss_dssp             EEEEEETTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCEECCSSSSEEEE
T ss_pred             EEEEEcCCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCceEEeecCCCccce
Confidence            34445578999999999 77766665653 67889999999999999983  3445555  5555556666666666778


Q ss_pred             EE------EEEEEeCCCeEEEEEcCC-CcEEEEEecCCCCeeEEEEcCCCCEEEEEcC-CCe---------------eee
Q 046394           92 QF------LLASINKLGQLRYQNVTM-GEIVGNFWTGLGRTDVIRVNPFNGVVSLGHS-GGT---------------MLC  148 (378)
Q Consensus        92 ~~------~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d~~---------------~~~  148 (378)
                      .|      ++++++.++.+.+|++.. +.....+..+...+.+++|+|++..|++++. ++.               +..
T Consensus       135 ~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~  214 (297)
T 2ojh_A          135 GWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITD  214 (297)
T ss_dssp             EECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCC
T ss_pred             EECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEec
Confidence            88      444788899999998642 2334556667788999999999998776653 444               445


Q ss_pred             cCCCEEEEEEecCCCEEEEEECC-----------CeEEEEEcCCcee--eeee---cCCceEEEEecCCCcccc
Q 046394          149 HQGPVSALAFHPNGHLMATSGKD-----------CKIKIWDLRKYEV--LQTL---PGHAKTLDFSRKDSGDFS  206 (378)
Q Consensus       149 h~~~v~~~~~sp~g~~l~t~~~d-----------~~i~iwd~~~~~~--~~~~---~~~i~~~~~sp~g~~~~~  206 (378)
                      |...+.+++|+|+|++|++++.+           +.|.+||+.+++.  +..+   ...+.+++|+|+|.+.++
T Consensus       215 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~  288 (297)
T 2ojh_A          215 SAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAY  288 (297)
T ss_dssp             CSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEE
T ss_pred             CCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEE
Confidence            66678899999999999888866           5699999988765  3333   357899999999986544

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.74  E-value=2e-15  Score=135.46  Aligned_cols=226  Identities=10%  Similarity=0.055  Sum_probs=142.1

Q ss_pred             cceeeeeec--ccceeeEEeecCCCCceEEEEcCCCCEEEEEeCC----CcEEEEeCCC--CeE---EeeccCC-CeeEE
Q 046394           24 EAIAREVDI--LSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCK----GYPYFYNRDG--TEL---HCSKEHG-EVLKL   91 (378)
Q Consensus        24 ~~~i~~~d~--~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~d----g~i~iwd~~~--~~~---~~~~~~~-~~~~l   91 (378)
                      ++.|.+|.+  .+++.......+...+..++|+|+|++|++++.+    +.|.+|+++.  ..+   .....+. .+..+
T Consensus        26 ~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~  105 (361)
T 3scy_A           26 SKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYL  105 (361)
T ss_dssp             CCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEE
T ss_pred             CCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEE
Confidence            456777766  4454332222266788899999999999999885    7999998432  222   2333333 34667


Q ss_pred             EE----EEEEEeCCCeEEEEEcCCCcEEE----EEe--c--------CCCCeeEEEEcCCCCEEEEEcC-CCe-----ee
Q 046394           92 QF----LLASINKLGQLRYQNVTMGEIVG----NFW--T--------GLGRTDVIRVNPFNGVVSLGHS-GGT-----ML  147 (378)
Q Consensus        92 ~~----~l~s~~~d~~i~iwd~~~~~~~~----~~~--~--------~~~~v~~~~~s~~~~~l~~~~~-d~~-----~~  147 (378)
                      ++    ++++...++.|.+|++.....+.    .+.  +        +...+.+++|+|+|+++++++. ++.     +.
T Consensus       106 ~~dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~  185 (361)
T 3scy_A          106 TTNGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNIN  185 (361)
T ss_dssp             EECSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             EECCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEc
Confidence            77    44444568999999997533221    111  1        1123578999999997666543 333     11


Q ss_pred             ----------------------ecCCCEEEEEEecCCCEEEEEE-CCCeEEEEEcCCcee--eeee------cCCceEEE
Q 046394          148 ----------------------CHQGPVSALAFHPNGHLMATSG-KDCKIKIWDLRKYEV--LQTL------PGHAKTLD  196 (378)
Q Consensus       148 ----------------------~h~~~v~~~~~sp~g~~l~t~~-~d~~i~iwd~~~~~~--~~~~------~~~i~~~~  196 (378)
                                            .+...+.+++|+|+|+++++++ .++.|.+||+.++.+  +..+      ...+..++
T Consensus       186 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~  265 (361)
T 3scy_A          186 PNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIH  265 (361)
T ss_dssp             TTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEE
T ss_pred             CCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEE
Confidence                                  1123467899999999887777 689999999987755  3333      13357999


Q ss_pred             EecCCCccccCCCC-CceEEEeec-------------cCCcceeeeEEcCCCCeEEEec-CCCeEEEE
Q 046394          197 FSRKDSGDFSGSHN-YNRYMGYSM-------------VKGYQIGKVSFRPYEDVLGIGH-SMGVSGIL  249 (378)
Q Consensus       197 ~sp~g~~~~~~~~~-~~~~~~~~~-------------~~~~~v~~~~~sp~g~~l~~~~-~~g~~~~~  249 (378)
                      |+|||++.+..... ...+..+..             ..+..+.+++|+|+|++|++++ .++.+.+|
T Consensus       266 ~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~~~~~~~v~v~  333 (361)
T 3scy_A          266 LSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLTGIHPRNFIITPNGKYLLVACRDTNVIQIF  333 (361)
T ss_dssp             ECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEECSSCCCEEEECTTSCEEEEEETTTTEEEEE
T ss_pred             ECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecCCCCCceEEECCCCCEEEEEECCCCCEEEE
Confidence            99999864322111 111111111             0133578899999999887776 45655554

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.73  E-value=3.5e-15  Score=132.34  Aligned_cols=190  Identities=9%  Similarity=0.039  Sum_probs=132.4

Q ss_pred             eeEEEecc-ceeeeeecc--cce--eeEEeecCCCCceEEEEcCCCCEEEEEeC-CCcEEEEeC-CC---CeEEeeccCC
Q 046394           17 KTWRIKQE-AIAREVDIL--SSR--NQYDIMLPELGPYTLDFTSSGRYMAAAGC-KGYPYFYNR-DG---TELHCSKEHG   86 (378)
Q Consensus        17 ~~~~~~~~-~~i~~~d~~--~~~--~~~~l~~~~~~v~~~~~sp~g~~l~~~~~-dg~i~iwd~-~~---~~~~~~~~~~   86 (378)
                      ..+....+ +.+.+|++.  ++.  .+..+..+ ..+.+++|+|+|++|++++. ++.|.+||. ++   ..+..+..+.
T Consensus        51 ~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~  129 (343)
T 1ri6_A           51 YLYVGVRPEFRVLAYRIAPDDGALTFAAESALP-GSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLD  129 (343)
T ss_dssp             EEEEEETTTTEEEEEEECTTTCCEEEEEEEECS-SCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCT
T ss_pred             EEEEeecCCCeEEEEEecCCCCceeeccccccC-CCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCC
Confidence            34444444 899999997  444  34455555 48899999999998877765 888999996 22   3344555555


Q ss_pred             CeeEEEE-----EEEEEe-CCCeEEEEEcCC-CcEEE----EEec-CCCCeeEEEEcCCCCEEEEEc-CCCe-----e--
Q 046394           87 EVLKLQF-----LLASIN-KLGQLRYQNVTM-GEIVG----NFWT-GLGRTDVIRVNPFNGVVSLGH-SGGT-----M--  146 (378)
Q Consensus        87 ~~~~l~~-----~l~s~~-~d~~i~iwd~~~-~~~~~----~~~~-~~~~v~~~~~s~~~~~l~~~~-~d~~-----~--  146 (378)
                      .+.+++|     .+++++ .++.|.+||+.+ ++...    .+.. ....+.+++|+|++.++++++ .++.     +  
T Consensus       130 ~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~  209 (343)
T 1ri6_A          130 GCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKD  209 (343)
T ss_dssp             TBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSC
T ss_pred             CceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecC
Confidence            6688888     555555 899999999987 65432    2232 335788999999999776554 5554     1  


Q ss_pred             -----------e----ec--CCCEEEEEEecCCCEEEE-EECCCeEEEEEcC--C--ceeeeee--cCCceEEEEecCCC
Q 046394          147 -----------L----CH--QGPVSALAFHPNGHLMAT-SGKDCKIKIWDLR--K--YEVLQTL--PGHAKTLDFSRKDS  202 (378)
Q Consensus       147 -----------~----~h--~~~v~~~~~sp~g~~l~t-~~~d~~i~iwd~~--~--~~~~~~~--~~~i~~~~~sp~g~  202 (378)
                                 .    ++  ...+.+++|+|+|++|++ +..++.|.+||+.  +  .+.+..+  ...+..++|+|+|.
T Consensus       210 ~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~  289 (343)
T 1ri6_A          210 PHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGK  289 (343)
T ss_dssp             TTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSS
T ss_pred             CCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCccceEEECCCCC
Confidence                       0    00  124557999999988774 4478999999998  2  3445555  45589999999998


Q ss_pred             ccccC
Q 046394          203 GDFSG  207 (378)
Q Consensus       203 ~~~~~  207 (378)
                      +.+..
T Consensus       290 ~l~~~  294 (343)
T 1ri6_A          290 YLIAA  294 (343)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            64443

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.73  E-value=7.4e-16  Score=137.12  Aligned_cols=196  Identities=10%  Similarity=-0.035  Sum_probs=140.0

Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEeC-CCCeEEeeccCC--CeeEEEE------EEEEEeCCCeEEEEEcCCCcEEEEEec
Q 046394           50 TLDFTSSGRYMAAAGCKGYPYFYNR-DGTELHCSKEHG--EVLKLQF------LLASINKLGQLRYQNVTMGEIVGNFWT  120 (378)
Q Consensus        50 ~~~~sp~g~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~--~~~~l~~------~l~s~~~d~~i~iwd~~~~~~~~~~~~  120 (378)
                      ++++++++.++++++.++.|.+||. ++..+..+..+.  .+..++|      +++++..++.|.+||+.+++.+..+..
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~   83 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL   83 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc
Confidence            4578888899999999999999995 556666676555  4577888      456667789999999999998877764


Q ss_pred             CC------CCeeEEEEcCCCCEEEEEcCC------------Ce----------------eeecCCCEEEEEEecCCCEEE
Q 046394          121 GL------GRTDVIRVNPFNGVVSLGHSG------------GT----------------MLCHQGPVSALAFHPNGHLMA  166 (378)
Q Consensus       121 ~~------~~v~~~~~s~~~~~l~~~~~d------------~~----------------~~~h~~~v~~~~~sp~g~~l~  166 (378)
                      ..      ..+..++|+|+|+++++++.+            +.                ...+...+.+++|+|+|+ ++
T Consensus        84 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-l~  162 (349)
T 1jmx_B           84 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS-LY  162 (349)
T ss_dssp             CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC-EE
T ss_pred             ccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCc-EE
Confidence            32      237889999999999988854            33                122444678899999999 55


Q ss_pred             EEECCCeEEEEEcCCceeeeee--cC------------------------------------------------------
Q 046394          167 TSGKDCKIKIWDLRKYEVLQTL--PG------------------------------------------------------  190 (378)
Q Consensus       167 t~~~d~~i~iwd~~~~~~~~~~--~~------------------------------------------------------  190 (378)
                      +++.  .|.+||+.+++.+..+  ..                                                      
T Consensus       163 ~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  240 (349)
T 1jmx_B          163 VAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDL  240 (349)
T ss_dssp             EESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEET
T ss_pred             EccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEec
Confidence            5543  4999999988876655  21                                                      


Q ss_pred             ---------------CceEEEEec-CCCc--------cccCCCCCceEEEeeccCCcceeeeEEcCCCCeEEEecCCCeE
Q 046394          191 ---------------HAKTLDFSR-KDSG--------DFSGSHNYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVS  246 (378)
Q Consensus       191 ---------------~i~~~~~sp-~g~~--------~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~  246 (378)
                                     .+..++|+| +|.+        .+|+..+...+..+..  ...+.+++|+|+|++|++++.++.+
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~~~~v  318 (349)
T 1jmx_B          241 KTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANL--DHTYYCVAFDKKGDKLYLGGTFNDL  318 (349)
T ss_dssp             TTCCEEEEEEEECSSCEEEEEECSSCTTEEEEEESEEEEEETTTTEEEEEEEC--SSCCCEEEECSSSSCEEEESBSSEE
T ss_pred             cCCcEEecccccCCCcceeeEecCCCCCEEEEEcCeEEEEECccCeEEEEEcC--CCCccceEECCCCCEEEEecCCCeE
Confidence                           223556678 7753        4455555555555443  3347789999999877766655655


Q ss_pred             EEEE
Q 046394          247 GILI  250 (378)
Q Consensus       247 ~~~~  250 (378)
                      .+|.
T Consensus       319 ~v~d  322 (349)
T 1jmx_B          319 AVFN  322 (349)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            5444

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.73  E-value=4.4e-17  Score=159.80  Aligned_cols=196  Identities=8%  Similarity=0.015  Sum_probs=137.5

Q ss_pred             CceEEEEcCCCCEEEEEeCCCcEEEEeC-CCCeEEeeccCCC----eeEEEE-----EEEEEeCC---------CeEEEE
Q 046394           47 GPYTLDFTSSGRYMAAAGCKGYPYFYNR-DGTELHCSKEHGE----VLKLQF-----LLASINKL---------GQLRYQ  107 (378)
Q Consensus        47 ~v~~~~~sp~g~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~----~~~l~~-----~l~s~~~d---------~~i~iw  107 (378)
                      .+.+++|+|||+++++ +.||.|++||. ++.....+..|..    +.+++|     .|++++.+         +.|.+|
T Consensus        18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~   96 (723)
T 1xfd_A           18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS   96 (723)
T ss_dssp             CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred             cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEE
Confidence            4678999999997776 68999999994 5566666666653    688889     77777664         789999


Q ss_pred             EcCCCcEEEEEec---CCCCeeEEEEcCCCCEEEEEcCCCe-------------eeecCCC------------------E
Q 046394          108 NVTMGEIVGNFWT---GLGRTDVIRVNPFNGVVSLGHSGGT-------------MLCHQGP------------------V  153 (378)
Q Consensus       108 d~~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~~~~~d~~-------------~~~h~~~------------------v  153 (378)
                      |+.+++. ..+..   +...+..++|||||+.|+.++....             ...+...                  +
T Consensus        97 d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~  175 (723)
T 1xfd_A           97 KIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTH  175 (723)
T ss_dssp             ESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSS
T ss_pred             ECCCCce-EeccCCccccccccccEECCCCCEEEEEECCeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCc
Confidence            9998876 33332   3334889999999999888876332             1222222                  2


Q ss_pred             EEEEEecCCCEEEEEECCC----------------------------------eEEEEEcCCceeeeee--c-------C
Q 046394          154 SALAFHPNGHLMATSGKDC----------------------------------KIKIWDLRKYEVLQTL--P-------G  190 (378)
Q Consensus       154 ~~~~~sp~g~~l~t~~~d~----------------------------------~i~iwd~~~~~~~~~~--~-------~  190 (378)
                      .+++|||||++|++++.|+                                  .|++||+.+++....+  +       .
T Consensus       176 ~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~  255 (723)
T 1xfd_A          176 IAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREY  255 (723)
T ss_dssp             EEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSE
T ss_pred             ceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccc
Confidence            7899999999999987653                                  7999999988765555  1       2


Q ss_pred             CceEEEEecCCCcc--------------ccCCCCCceEEEeeccCCcce----eeeEEcCCCCeEEE--ecCCC
Q 046394          191 HAKTLDFSRKDSGD--------------FSGSHNYNRYMGYSMVKGYQI----GKVSFRPYEDVLGI--GHSMG  244 (378)
Q Consensus       191 ~i~~~~~sp~g~~~--------------~~~~~~~~~~~~~~~~~~~~v----~~~~~sp~g~~l~~--~~~~g  244 (378)
                      .+.+++|||||++.              +|+..++.........+...+    ..+.|+|||+.|+.  +..+|
T Consensus       256 ~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~  329 (723)
T 1xfd_A          256 YITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQG  329 (723)
T ss_dssp             EEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCS
T ss_pred             eeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccC
Confidence            46889999999753              233333333333322122333    37899999997775  44566

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.72  E-value=3.3e-16  Score=159.57  Aligned_cols=179  Identities=12%  Similarity=0.118  Sum_probs=139.9

Q ss_pred             EeccceeeeeecccceeeEEeec-----------CCCCceEEEEc-CCCCEEEEEeCCCcEEEEeCCCCeEEeeccCCC-
Q 046394           21 IKQEAIAREVDILSSRNQYDIML-----------PELGPYTLDFT-SSGRYMAAAGCKGYPYFYNRDGTELHCSKEHGE-   87 (378)
Q Consensus        21 ~~~~~~i~~~d~~~~~~~~~l~~-----------~~~~v~~~~~s-p~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-   87 (378)
                      +..++.+.+||+... .+..+..           |...+.+++|| |||++|++++ ++.|.+|+..+.....+..|.. 
T Consensus       261 ~~~~~~i~~~d~~~~-~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~~~~~~~~  338 (1045)
T 1k32_A          261 FSKGGSIYIFNPDTE-KIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKVPEPLRI  338 (1045)
T ss_dssp             EEETTEEEEECTTTC-CEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEECSCCSCE
T ss_pred             EEeCCEEEEecCCce-EeeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEEccCCCcc
Confidence            345778899998443 3345544           23368999999 9999999887 7899999976666666766665 


Q ss_pred             e-eEEEE----EEEEEeCCCeEE-EEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe--------------ee
Q 046394           88 V-LKLQF----LLASINKLGQLR-YQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT--------------ML  147 (378)
Q Consensus        88 ~-~~l~~----~l~s~~~d~~i~-iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~--------------~~  147 (378)
                      . ..+.|    .+++++.++.+. +||+.+++... +..+...+..++|+|||++|++++.++.              +.
T Consensus       339 ~~~~~~~sdg~~l~~~s~~~~l~~~~d~~~~~~~~-l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~  417 (1045)
T 1k32_A          339 RYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEK-FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIER  417 (1045)
T ss_dssp             EEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEE-CCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             eEEeeeEcCCCeEEEEECCCceEEEEECCCCCceE-ecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEecc
Confidence            3 66666    677777788888 99998776544 4467788999999999999999988876              33


Q ss_pred             ecCCCEEEEEEecCCCEEEEEECCC----------eEEEEEcCCceeeeee---cCCceEEEEecCCCc
Q 046394          148 CHQGPVSALAFHPNGHLMATSGKDC----------KIKIWDLRKYEVLQTL---PGHAKTLDFSRKDSG  203 (378)
Q Consensus       148 ~h~~~v~~~~~sp~g~~l~t~~~d~----------~i~iwd~~~~~~~~~~---~~~i~~~~~sp~g~~  203 (378)
                      +|.+.+.+++|+|||++|++++.++          .|++||+.+++ +..+   ...+.+++|+|||.+
T Consensus       418 ~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~  485 (1045)
T 1k32_A          418 SREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKN  485 (1045)
T ss_dssp             CSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCE
T ss_pred             CCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCE
Confidence            7888899999999999999887654          89999999887 4444   356788999999985

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.72  E-value=6.5e-16  Score=147.71  Aligned_cols=218  Identities=9%  Similarity=-0.026  Sum_probs=146.7

Q ss_pred             eEEEec-cceeeeeecccceeeEEeecCC-CCceEEEEcCCCCEEEEEeC---CCcEEEEe--C--CCCeEEeeccCCCe
Q 046394           18 TWRIKQ-EAIAREVDILSSRNQYDIMLPE-LGPYTLDFTSSGRYMAAAGC---KGYPYFYN--R--DGTELHCSKEHGEV   88 (378)
Q Consensus        18 ~~~~~~-~~~i~~~d~~~~~~~~~l~~~~-~~v~~~~~sp~g~~l~~~~~---dg~i~iwd--~--~~~~~~~~~~~~~~   88 (378)
                      .+..+. ++.+++|++.++.. ..+..|. ..+.+++|||| +.+++++.   +....+|.  .  .+... .+....+.
T Consensus        36 la~~s~~~g~~~lw~~~~g~~-~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~-~l~~~~~~  112 (582)
T 3o4h_A           36 LLVVGFSEGSVNAYLYDGGET-VKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEEQ-RLEAVKPM  112 (582)
T ss_dssp             EEEEEEETTEEEEEEEETTEE-EECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCCE-ECTTSCSB
T ss_pred             EEEEEccCCceeEEEEcCCCc-EeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCccc-cccCCCCc
Confidence            333444 88999999966655 4555554 58899999999 77777765   44455654  5  55554 44444443


Q ss_pred             eEEEE-------EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCC----Ce------------
Q 046394           89 LKLQF-------LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSG----GT------------  145 (378)
Q Consensus        89 ~~l~~-------~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----~~------------  145 (378)
                      ...+|       .+++++.++ +.+||+.+++.......+ .  .+++|||||++|++++.+    ..            
T Consensus       113 ~~~~~s~dg~~~~~~s~~~~~-~~l~d~~~g~~~~l~~~~-~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~  188 (582)
T 3o4h_A          113 RILSGVDTGEAVVFTGATEDR-VALYALDGGGLRELARLP-G--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR  188 (582)
T ss_dssp             EEEEEEECSSCEEEEEECSSC-EEEEEEETTEEEEEEEES-S--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE
T ss_pred             eeeeeCCCCCeEEEEecCCCC-ceEEEccCCcEEEeecCC-C--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce
Confidence            33344       444554444 559999998766555433 2  889999999999977655    22            


Q ss_pred             -eeecCCCEEEEEEecCCCEEEEEECCC--eEEEEEcCCceeeeee---cCCceEEE--------EecCCCccccCCCCC
Q 046394          146 -MLCHQGPVSALAFHPNGHLMATSGKDC--KIKIWDLRKYEVLQTL---PGHAKTLD--------FSRKDSGDFSGSHNY  211 (378)
Q Consensus       146 -~~~h~~~v~~~~~sp~g~~l~t~~~d~--~i~iwd~~~~~~~~~~---~~~i~~~~--------~sp~g~~~~~~~~~~  211 (378)
                       +..|.+.+.+++|||||++|+++..++  .|++||+.+++.. .+   ...+..++        |||||.+.+......
T Consensus       189 ~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g  267 (582)
T 3o4h_A          189 VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREG  267 (582)
T ss_dssp             EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETT
T ss_pred             EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCC
Confidence             566778899999999999999888888  8999999998877 44   24455666        999995322111111


Q ss_pred             ceEEEee-c----cCCcceeeeEEcCCCCeEEEecCCCe
Q 046394          212 NRYMGYS-M----VKGYQIGKVSFRPYEDVLGIGHSMGV  245 (378)
Q Consensus       212 ~~~~~~~-~----~~~~~v~~~~~sp~g~~l~~~~~~g~  245 (378)
                       ....+. +    .....|.+++|+ +|.++++++.+..
T Consensus       268 -~~~l~~~g~~~~~~~~~v~~~~~s-dg~~l~~~s~~~~  304 (582)
T 3o4h_A          268 -RSAVFIDGERVEAPQGNHGRVVLW-RGKLVTSHTSLST  304 (582)
T ss_dssp             -EEEEEETTEEECCCSSEEEEEEEE-TTEEEEEEEETTE
T ss_pred             -cEEEEEECCeeccCCCceEEEEec-CCEEEEEEcCCCC
Confidence             111110 0    134568899999 9988888776654

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.70  E-value=8.9e-15  Score=129.33  Aligned_cols=202  Identities=8%  Similarity=0.073  Sum_probs=139.5

Q ss_pred             eEEEec-cceeeeeeccccee-eEEeecCCCCceEEEEcCCCCEEEEEeCCC---cEEEEeC-CCCeEEeeccCCCeeEE
Q 046394           18 TWRIKQ-EAIAREVDILSSRN-QYDIMLPELGPYTLDFTSSGRYMAAAGCKG---YPYFYNR-DGTELHCSKEHGEVLKL   91 (378)
Q Consensus        18 ~~~~~~-~~~i~~~d~~~~~~-~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg---~i~iwd~-~~~~~~~~~~~~~~~~l   91 (378)
                      .+.... ++.|.+||+.+++. ...+..+.....+++|+|+|++|+++..++   .|.+||. ++..+..+..+..+.++
T Consensus        54 l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~  133 (331)
T 3u4y_A           54 VVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGI  133 (331)
T ss_dssp             EEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEE
T ss_pred             EEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCccce
Confidence            444433 67999999999987 777777755555599999999999555553   8999995 55666667666667889


Q ss_pred             EE------EEEEEeCCCe-EEEEEcCCCcEE----EEEecCCCCeeEEEEcCCCCEEEEEc-CCCe----------e---
Q 046394           92 QF------LLASINKLGQ-LRYQNVTMGEIV----GNFWTGLGRTDVIRVNPFNGVVSLGH-SGGT----------M---  146 (378)
Q Consensus        92 ~~------~l~s~~~d~~-i~iwd~~~~~~~----~~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~----------~---  146 (378)
                      +|      ++++...++. |.+|++.....+    .........+..++|+|+|+++++++ .++.          .   
T Consensus       134 ~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~  213 (331)
T 3u4y_A          134 AISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITL  213 (331)
T ss_dssp             EECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEE
T ss_pred             EECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccce
Confidence            99      5566666678 999998754332    12223345688999999999665554 4554          1   


Q ss_pred             ---eecCCCEEEEEEecCCCEEEEEE-CCCeEEEEEcCCcee--eeee-------c---CCceEEEEecCCCccccCCCC
Q 046394          147 ---LCHQGPVSALAFHPNGHLMATSG-KDCKIKIWDLRKYEV--LQTL-------P---GHAKTLDFSRKDSGDFSGSHN  210 (378)
Q Consensus       147 ---~~h~~~v~~~~~sp~g~~l~t~~-~d~~i~iwd~~~~~~--~~~~-------~---~~i~~~~~sp~g~~~~~~~~~  210 (378)
                         ..+...+.+++|+|+|+++++++ .++.|.+||+.+++.  +..+       .   .....++|+|||.+.+.....
T Consensus       214 ~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~  293 (331)
T 3u4y_A          214 LNAVGTNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANI  293 (331)
T ss_dssp             EEEEECSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETT
T ss_pred             eeeccCCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCC
Confidence               11234567899999999776554 577899999999887  3333       1   123568999999875444334


Q ss_pred             CceEEEeec
Q 046394          211 YNRYMGYSM  219 (378)
Q Consensus       211 ~~~~~~~~~  219 (378)
                      ...+..+..
T Consensus       294 ~~~v~v~d~  302 (331)
T 3u4y_A          294 SRELKVFTI  302 (331)
T ss_dssp             TTEEEEEET
T ss_pred             CCcEEEEEe
Confidence            444444443

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.70  E-value=4e-14  Score=126.10  Aligned_cols=189  Identities=10%  Similarity=0.098  Sum_probs=130.4

Q ss_pred             eEEEec---cceeeeeecccce--eeEEeecCCCCceEEEEcCCCCEEEEEe-CCCcEEEEeCC--CCe--EEeeccC--
Q 046394           18 TWRIKQ---EAIAREVDILSSR--NQYDIMLPELGPYTLDFTSSGRYMAAAG-CKGYPYFYNRD--GTE--LHCSKEH--   85 (378)
Q Consensus        18 ~~~~~~---~~~i~~~d~~~~~--~~~~l~~~~~~v~~~~~sp~g~~l~~~~-~dg~i~iwd~~--~~~--~~~~~~~--   85 (378)
                      .|....   ++.|.+||+.++.  .+..+..+...+..++|+|+|++|++++ .++.|.+|+..  +..  +..+...  
T Consensus        53 l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~  132 (347)
T 3hfq_A           53 LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGH  132 (347)
T ss_dssp             EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCC
T ss_pred             EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCC
Confidence            555544   5899999997765  3444455677899999999999998888 67899999953  222  2222211  


Q ss_pred             --------CCeeEEEE-----EEEEEeCCCeEEEEEcC-CCcEE--EEEecC-CCCeeEEEEcCCCCEEEEEc-CCCe--
Q 046394           86 --------GEVLKLQF-----LLASINKLGQLRYQNVT-MGEIV--GNFWTG-LGRTDVIRVNPFNGVVSLGH-SGGT--  145 (378)
Q Consensus        86 --------~~~~~l~~-----~l~s~~~d~~i~iwd~~-~~~~~--~~~~~~-~~~v~~~~~s~~~~~l~~~~-~d~~--  145 (378)
                              ..+.+++|     ++++...++.|.+||+. ++...  ..+... ...+..++|+|+|+++++++ .++.  
T Consensus       133 ~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~  212 (347)
T 3hfq_A          133 GPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIA  212 (347)
T ss_dssp             CSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEE
T ss_pred             CCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEE
Confidence                    11366888     77777788999999998 55433  222332 23678899999999766654 3433  


Q ss_pred             ---ee-------------ecC------CCEEEEEEecCCCEE-EEEECCCeEEEEEcCC-c--eeeeee---cCCceEEE
Q 046394          146 ---ML-------------CHQ------GPVSALAFHPNGHLM-ATSGKDCKIKIWDLRK-Y--EVLQTL---PGHAKTLD  196 (378)
Q Consensus       146 ---~~-------------~h~------~~v~~~~~sp~g~~l-~t~~~d~~i~iwd~~~-~--~~~~~~---~~~i~~~~  196 (378)
                         +.             ...      ..+..++|+|+|++| ++...++.|.+||+.. +  ..+..+   ...+..++
T Consensus       213 v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~  292 (347)
T 3hfq_A          213 SLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFD  292 (347)
T ss_dssp             EEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEE
T ss_pred             EEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEE
Confidence               11             111      347789999999987 5566789999999973 2  444444   24588999


Q ss_pred             EecCCCcccc
Q 046394          197 FSRKDSGDFS  206 (378)
Q Consensus       197 ~sp~g~~~~~  206 (378)
                      |+|||++.+.
T Consensus       293 ~spdg~~l~v  302 (347)
T 3hfq_A          293 LDPTEAFVVV  302 (347)
T ss_dssp             ECTTSSEEEE
T ss_pred             ECCCCCEEEE
Confidence            9999986443

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.69  E-value=3.4e-15  Score=152.19  Aligned_cols=229  Identities=9%  Similarity=-0.026  Sum_probs=168.2

Q ss_pred             ccceeeeeecccceeeEEeecCCC-CceEEEEcCCCCEEEEEeCCCcEE-EEeCCCCeEEeeccCCC-eeEEEE-----E
Q 046394           23 QEAIAREVDILSSRNQYDIMLPEL-GPYTLDFTSSGRYMAAAGCKGYPY-FYNRDGTELHCSKEHGE-VLKLQF-----L   94 (378)
Q Consensus        23 ~~~~i~~~d~~~~~~~~~l~~~~~-~v~~~~~sp~g~~l~~~~~dg~i~-iwd~~~~~~~~~~~~~~-~~~l~~-----~   94 (378)
                      .++.+.+|++.++... .+..|.. .+.+++|+ ||+.|++++.++.+. +||..+.....+..|.. +..++|     .
T Consensus       315 ~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~  392 (1045)
T 1k32_A          315 SRGQAFIQDVSGTYVL-KVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKF  392 (1045)
T ss_dssp             ETTEEEEECTTSSBEE-ECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSE
T ss_pred             EcCEEEEEcCCCCceE-EccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceEecCCccceeeeEECCCCCE
Confidence            3678899998877643 4667767 78999999 999999998888888 88977666666666654 488899     8


Q ss_pred             EEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCC----------e-------------eeecCC
Q 046394           95 LASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGG----------T-------------MLCHQG  151 (378)
Q Consensus        95 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~----------~-------------~~~h~~  151 (378)
                      |++++.++.|++||+.+++....+..+...+.+++|+|||++|++++.++          .             +..|..
T Consensus       393 la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~~~~~  472 (1045)
T 1k32_A          393 AVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENS  472 (1045)
T ss_dssp             EEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSS
T ss_pred             EEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEEEeeCCCc
Confidence            89999999999999999998888778888999999999999998877643          1             445677


Q ss_pred             CEEEEEEecCCCEEEEEECCCeEEEEEcCCcee-------------------------------------------eeee
Q 046394          152 PVSALAFHPNGHLMATSGKDCKIKIWDLRKYEV-------------------------------------------LQTL  188 (378)
Q Consensus       152 ~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~-------------------------------------------~~~~  188 (378)
                      .+.+++|+|+|++|++++.++...+|+......                                           +..+
T Consensus       473 ~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l  552 (1045)
T 1k32_A          473 HDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPI  552 (1045)
T ss_dssp             BEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEEC
T ss_pred             ccCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEc
Confidence            788999999999999999888777776433211                                           1112


Q ss_pred             --c-CCceEEEEecCCCcccc------------CCCCCceEEEeecc------CCcceeeeEEcCCCCeEEEecCCCeEE
Q 046394          189 --P-GHAKTLDFSRKDSGDFS------------GSHNYNRYMGYSMV------KGYQIGKVSFRPYEDVLGIGHSMGVSG  247 (378)
Q Consensus       189 --~-~~i~~~~~sp~g~~~~~------------~~~~~~~~~~~~~~------~~~~v~~~~~sp~g~~l~~~~~~g~~~  247 (378)
                        + ..+..++++|||.+.+.            .......+..+...      -...+..++|||||+.|++++.++ +.
T Consensus       553 ~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~v~~~~~S~DG~~l~~~~~~~-i~  631 (1045)
T 1k32_A          553 NVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKNNLTDLRLSADRKTVMVRKDDG-KI  631 (1045)
T ss_dssp             SCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEEEEEEEEEECTTSCEEEEEETTS-CE
T ss_pred             CCCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCCcEEEeecCcceEEECCCCCEEEEEcCCc-EE
Confidence              2 45678999999975442            11111122222110      013578899999999999998875 45


Q ss_pred             EEEcCCC
Q 046394          248 ILIPGSG  254 (378)
Q Consensus       248 ~~~~~s~  254 (378)
                      +|....+
T Consensus       632 ~~d~~~~  638 (1045)
T 1k32_A          632 YTFPLEK  638 (1045)
T ss_dssp             EEEESSC
T ss_pred             EEeCccC
Confidence            5554443

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.69  E-value=5.9e-16  Score=148.00  Aligned_cols=201  Identities=14%  Similarity=0.098  Sum_probs=141.1

Q ss_pred             CCCceEEEEcCCCCEEEEEeC-CCcEEEEeCCCCeEEeeccCC-C-eeEEEE----EEEEEeC---CCeEEEEEcCC---
Q 046394           45 ELGPYTLDFTSSGRYMAAAGC-KGYPYFYNRDGTELHCSKEHG-E-VLKLQF----LLASINK---LGQLRYQNVTM---  111 (378)
Q Consensus        45 ~~~v~~~~~sp~g~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~-~-~~~l~~----~l~s~~~---d~~i~iwd~~~---  111 (378)
                      ...|++++|+|||++||+++. ||++.||++++.....+..+. . +..+.|    ++++++.   +....+|.+..   
T Consensus        21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd~~l~~~~~~~g~~~~~l~~~~~~~~  100 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRP  100 (582)
T ss_dssp             HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCSEEEEEEECSTTSCCEEEEEEETTST
T ss_pred             ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCCeEEEEeccCCCCcceEEEEEeccCC
Confidence            357999999999999999887 999999998777777776665 3 377777    5565554   45556655433   


Q ss_pred             CcEEEEEecCCCCeeEEEEcCCCC--EEEEEcCCCe------------eeecCCCEEEEEEecCCCEEEEEECC----Ce
Q 046394          112 GEIVGNFWTGLGRTDVIRVNPFNG--VVSLGHSGGT------------MLCHQGPVSALAFHPNGHLMATSGKD----CK  173 (378)
Q Consensus       112 ~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~d~~------------~~~h~~~v~~~~~sp~g~~l~t~~~d----~~  173 (378)
                      +... .+.. ...+...+|+|+++  .+++++.++.            +..+..  .+++|||||++|++++.+    +.
T Consensus       101 g~~~-~l~~-~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~--~~~~~spDG~~la~~~~~~~~~~~  176 (582)
T 3o4h_A          101 GEEQ-RLEA-VKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG--FGFVSDIRGDLIAGLGFFGGGRVS  176 (582)
T ss_dssp             TCCE-ECTT-SCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS--CEEEEEEETTEEEEEEEEETTEEE
T ss_pred             Cccc-cccC-CCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC--ceEEECCCCCEEEEEEEcCCCCeE
Confidence            3322 3322 23455678888885  4455555544            223333  789999999999988877    78


Q ss_pred             EEEEEcCCceeeeee--cCCceEEEEecCCCcc------------ccCCCCCceEEEeeccCCcceeeeE--------Ec
Q 046394          174 IKIWDLRKYEVLQTL--PGHAKTLDFSRKDSGD------------FSGSHNYNRYMGYSMVKGYQIGKVS--------FR  231 (378)
Q Consensus       174 i~iwd~~~~~~~~~~--~~~i~~~~~sp~g~~~------------~~~~~~~~~~~~~~~~~~~~v~~~~--------~s  231 (378)
                      |++||+.+++.....  ...+..++|||||+..            +|+..+.... .... +...+..+.        |+
T Consensus       177 i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~s  254 (582)
T 3o4h_A          177 LFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLEL-PSKDFSSYRPTAITWLGYL  254 (582)
T ss_dssp             EEEEETTTCCCEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCC-SCSHHHHHCCSEEEEEEEC
T ss_pred             EEEEcCCCCCceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccC-CCcChhhhhhccccceeEc
Confidence            999999988765333  3668999999999863            3343333333 3333 555677778        99


Q ss_pred             CCCCeEEEecCCCeEEEEEc
Q 046394          232 PYEDVLGIGHSMGVSGILIP  251 (378)
Q Consensus       232 p~g~~l~~~~~~g~~~~~~~  251 (378)
                      |||.++++++.+|.+.+|..
T Consensus       255 pdg~~~~~~~~~g~~~l~~~  274 (582)
T 3o4h_A          255 PDGRLAVVARREGRSAVFID  274 (582)
T ss_dssp             TTSCEEEEEEETTEEEEEET
T ss_pred             CCCcEEEEEEcCCcEEEEEE
Confidence            99988888988998887765

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.69  E-value=6.2e-16  Score=142.12  Aligned_cols=181  Identities=12%  Similarity=0.024  Sum_probs=126.4

Q ss_pred             ceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCC-----------CeE------EeeccCCC
Q 046394           25 AIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDG-----------TEL------HCSKEHGE   87 (378)
Q Consensus        25 ~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~-----------~~~------~~~~~~~~   87 (378)
                      ..+++|+...       ..+...+..+++++++.++++++.+| ++||+...           ..+      ..+.....
T Consensus        23 ~~vri~~~~~-------~~~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (434)
T 2oit_A           23 KKVRIFDSPE-------ELPKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFP   94 (434)
T ss_dssp             CEEECSCCCS-------SCCCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSC
T ss_pred             eeEEecCCcc-------ccCCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCc
Confidence            4677776421       12345688999999999999999888 88887210           111      11221223


Q ss_pred             eeEEEE-----EEE----EEeCCCeEEEEEcCCC--------cEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCeeeecC
Q 046394           88 VLKLQF-----LLA----SINKLGQLRYQNVTMG--------EIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGTMLCHQ  150 (378)
Q Consensus        88 ~~~l~~-----~l~----s~~~d~~i~iwd~~~~--------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~~~~h~  150 (378)
                      +.+++|     +|+    +++.|+.|++||+.++        +++..+..                         +.+|.
T Consensus        95 v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~-------------------------~~~h~  149 (434)
T 2oit_A           95 IHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKL-------------------------LKDAG  149 (434)
T ss_dssp             EEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEEC-------------------------CCSGG
T ss_pred             ccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeec-------------------------cCCCC
Confidence            588999     666    7888999999998754        11111111                         23688


Q ss_pred             CCEEEEEEecC-CCEEEEEECCCeEEEEEcCCceeeeee---cCCceEEEEecCCCc----------cccCCCCCceEEE
Q 046394          151 GPVSALAFHPN-GHLMATSGKDCKIKIWDLRKYEVLQTL---PGHAKTLDFSRKDSG----------DFSGSHNYNRYMG  216 (378)
Q Consensus       151 ~~v~~~~~sp~-g~~l~t~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~~sp~g~~----------~~~~~~~~~~~~~  216 (378)
                      ..|.+++|+|+ +++|++++.||+|++||++++..+...   ...+++++|+|+|.+          .+|+.. ......
T Consensus       150 ~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~  228 (434)
T 2oit_A          150 GMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKV  228 (434)
T ss_dssp             GSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEE
T ss_pred             CceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Cccccc
Confidence            99999999997 899999999999999999998766544   368999999999875          456654 233333


Q ss_pred             eec------cCCcceeeeEEcCCCCeEEE
Q 046394          217 YSM------VKGYQIGKVSFRPYEDVLGI  239 (378)
Q Consensus       217 ~~~------~~~~~v~~~~~sp~g~~l~~  239 (378)
                      +..      .|...|.++.|++++.++++
T Consensus       229 ~~~~~~~~~~~~~~v~~v~w~~~~~~l~~  257 (434)
T 2oit_A          229 IPCPPFYESDHPVRVLDVLWIGTYVFAIV  257 (434)
T ss_dssp             ECCCTTCCTTSCEEEEEEEEEETTEEEEE
T ss_pred             ccCCcccCCCCceeEEEEEEecCceEEEE
Confidence            322      02237999999999877754

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.69  E-value=7e-15  Score=133.01  Aligned_cols=215  Identities=11%  Similarity=-0.046  Sum_probs=139.5

Q ss_pred             eeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCC-CCeEEeeccCCCe-eEEEE-------EEE
Q 046394           26 IAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRD-GTELHCSKEHGEV-LKLQF-------LLA   96 (378)
Q Consensus        26 ~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~-~~l~~-------~l~   96 (378)
                      .|.+||+.+++......++...+.+++|||||+.|++++.++.|++||.. +.....+..+... ....|       +++
T Consensus        61 ~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~  140 (388)
T 3pe7_A           61 NYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLV  140 (388)
T ss_dssp             EEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEE
T ss_pred             eEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeec
Confidence            48888999888776666665666678999999999999999999999954 4444444444443 22333       333


Q ss_pred             E----------------------EeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcC-CCCEEEEEcCCC------e--
Q 046394           97 S----------------------INKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNP-FNGVVSLGHSGG------T--  145 (378)
Q Consensus        97 s----------------------~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~------~--  145 (378)
                      .                      .+.+..|.+||+.+++..... .+...+..++|+| +|+.|+.....+      .  
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~  219 (388)
T 3pe7_A          141 GIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVIL-QENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMW  219 (388)
T ss_dssp             EEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEE
T ss_pred             cccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEee-cCCccccccEECCCCCCEEEEEEecCCCCCcceEE
Confidence            2                      224478999999998765443 4556789999999 999887766432      1  


Q ss_pred             -----------eeecC--CCEEEEEEecCCCEEEEEEC-CC----eEEEEEcCCceee--eeecC------CceEEEEec
Q 046394          146 -----------MLCHQ--GPVSALAFHPNGHLMATSGK-DC----KIKIWDLRKYEVL--QTLPG------HAKTLDFSR  199 (378)
Q Consensus       146 -----------~~~h~--~~v~~~~~sp~g~~l~t~~~-d~----~i~iwd~~~~~~~--~~~~~------~i~~~~~sp  199 (378)
                                 +..+.  ..+..++|+|||+.|+..+. ++    .|.+||+.+++..  ..+..      ....+.|+|
T Consensus       220 ~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~sp  299 (388)
T 3pe7_A          220 LINEDGTNMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVG  299 (388)
T ss_dssp             EEETTSCCCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEE
T ss_pred             EEeCCCCceEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEcc
Confidence                       22233  24778899999998765543 22    3999999988743  23222      133457999


Q ss_pred             CCCccccCC--------CCCceEE----------EeeccCCc-----------ceeeeEEcCCCCeEEEecC
Q 046394          200 KDSGDFSGS--------HNYNRYM----------GYSMVKGY-----------QIGKVSFRPYEDVLGIGHS  242 (378)
Q Consensus       200 ~g~~~~~~~--------~~~~~~~----------~~~~~~~~-----------~v~~~~~sp~g~~l~~~~~  242 (378)
                      ||...++..        .....+.          .+.. +..           .+.+++|+|||+.|+.++.
T Consensus       300 dg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~  370 (388)
T 3pe7_A          300 DGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVAR-HDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSD  370 (388)
T ss_dssp             EECCC------------CCCCEEEEEETTTTEEEEEEE-CCCCCCCBTTBSSTTCCCCEECTTSSEEEEEEC
T ss_pred             CCCcceeEeeeccccccCCCCEEEEEeccCCceEEecc-ccCcccccccccccCCCCccCCCCCCEEEEEec
Confidence            998655321        1111121          2222 222           4778899999987776553

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.67  E-value=1.3e-15  Score=149.35  Aligned_cols=193  Identities=10%  Similarity=0.028  Sum_probs=136.2

Q ss_pred             CCeeecCCceeeEEEeccceeeeeecccceeeEEeecCCC---CceEEEEcCCCCEEEEEeC---------CCcEEEEeC
Q 046394            7 GGYLEAEGVEKTWRIKQEAIAREVDILSSRNQYDIMLPEL---GPYTLDFTSSGRYMAAAGC---------KGYPYFYNR   74 (378)
Q Consensus         7 ~~~l~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~---~v~~~~~sp~g~~l~~~~~---------dg~i~iwd~   74 (378)
                      ...+.+++  +.+....++.|.+||+.+++....+..|..   .+.+++|||||++|++++.         ++.|++||.
T Consensus        20 ~~~~s~dg--~~~~~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~   97 (719)
T 1z68_A           20 FPNWISGQ--EYLHQSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDL   97 (719)
T ss_dssp             CCEESSSS--EEEEECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred             ccEECCCC--eEEEEcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEEC
Confidence            34455555  344455688999999999988777766543   4899999999999998876         689999997


Q ss_pred             CCCeE---EeeccCCCeeEEEE-----EEEEEeCCCeEEEEEcCCCcEEEEEe-cCCCC-----------------eeEE
Q 046394           75 DGTEL---HCSKEHGEVLKLQF-----LLASINKLGQLRYQNVTMGEIVGNFW-TGLGR-----------------TDVI  128 (378)
Q Consensus        75 ~~~~~---~~~~~~~~~~~l~~-----~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~-----------------v~~~  128 (378)
                      .+...   ..+.  ..+..++|     .|+.+. ++.|++||+.+++...... ++...                 ..++
T Consensus        98 ~~g~~~~~~~l~--~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~  174 (719)
T 1z68_A           98 SNGEFVRGNELP--RPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYAL  174 (719)
T ss_dssp             TTTEECCSSCCC--SSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCE
T ss_pred             CCCccccceecC--cccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccE
Confidence            66554   3332  33577888     666664 7899999998887654322 22121                 2489


Q ss_pred             EEcCCCCEEEEEcCCC----------------------------------e----------e------------eecCCC
Q 046394          129 RVNPFNGVVSLGHSGG----------------------------------T----------M------------LCHQGP  152 (378)
Q Consensus       129 ~~s~~~~~l~~~~~d~----------------------------------~----------~------------~~h~~~  152 (378)
                      +|||||+.|++++.+.                                  .          .            .+|...
T Consensus       175 ~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~  254 (719)
T 1z68_A          175 WWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYY  254 (719)
T ss_dssp             EECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEE
T ss_pred             EECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcce
Confidence            9999999999887541                                  1          1            135667


Q ss_pred             EEEEEEecCCCEEEEEECC----CeEEEEE----cCCceeeeee-------cCCce-----EEEEecCCCcc
Q 046394          153 VSALAFHPNGHLMATSGKD----CKIKIWD----LRKYEVLQTL-------PGHAK-----TLDFSRKDSGD  204 (378)
Q Consensus       153 v~~~~~sp~g~~l~t~~~d----~~i~iwd----~~~~~~~~~~-------~~~i~-----~~~~sp~g~~~  204 (378)
                      +.+++|+||++++++....    ..|.+||    +.++++...+       ...+.     .+.|+|||...
T Consensus       255 ~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l  326 (719)
T 1z68_A          255 FSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISY  326 (719)
T ss_dssp             EEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCE
T ss_pred             EEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeE
Confidence            8999999998877775432    2588999    8777654322       23455     88999999853

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.67  E-value=1.9e-14  Score=127.21  Aligned_cols=182  Identities=12%  Similarity=0.082  Sum_probs=135.4

Q ss_pred             EEeccceeeeeecccceeeEEeecCC-----CCceEEEEcCCCCEEEEEe------------CCCcEEEEeCC-CCeEEe
Q 046394           20 RIKQEAIAREVDILSSRNQYDIMLPE-----LGPYTLDFTSSGRYMAAAG------------CKGYPYFYNRD-GTELHC   81 (378)
Q Consensus        20 ~~~~~~~i~~~d~~~~~~~~~l~~~~-----~~v~~~~~sp~g~~l~~~~------------~dg~i~iwd~~-~~~~~~   81 (378)
                      ....++.|.+||+.+++.+..+....     ..+.+++|+|+|++|++++            .++.|.+||.. +..+..
T Consensus        51 ~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~  130 (337)
T 1pby_B           51 TVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKA  130 (337)
T ss_dssp             EETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEE
T ss_pred             EeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEE
Confidence            33446899999999998877776431     2678999999999998886            57999999964 455556


Q ss_pred             eccCCCeeEEEE-----EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe-----------
Q 046394           82 SKEHGEVLKLQF-----LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT-----------  145 (378)
Q Consensus        82 ~~~~~~~~~l~~-----~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~-----------  145 (378)
                      +.....+.+++|     .++++  ++.|.+||+.+++.+..+..+.. ...+.|+|++..+++++..+.           
T Consensus       131 ~~~~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~  207 (337)
T 1pby_B          131 FEAPRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARK  207 (337)
T ss_dssp             EECCSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBT
T ss_pred             EeCCCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeecccc-CCCceeCCCccEEeeeccCCCceeeeeecccc
Confidence            655445577888     45555  68899999999998877765431 113378888876544432211           


Q ss_pred             ----------------------------eeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee--cCCceEE
Q 046394          146 ----------------------------MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL--PGHAKTL  195 (378)
Q Consensus       146 ----------------------------~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~--~~~i~~~  195 (378)
                                                  +..+...+.+++|+|+|++++++  ++.|.+||+.+++.+..+  ...+.++
T Consensus       208 ~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~  285 (337)
T 1pby_B          208 DIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPHSYYSV  285 (337)
T ss_dssp             TSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEE
T ss_pred             ccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCCCceeeE
Confidence                                        22344567889999999998888  799999999999988877  5678999


Q ss_pred             EEecCCCcccc
Q 046394          196 DFSRKDSGDFS  206 (378)
Q Consensus       196 ~~sp~g~~~~~  206 (378)
                      +|+|+|.+.+.
T Consensus       286 ~~s~dg~~l~~  296 (337)
T 1pby_B          286 NVSTDGSTVWL  296 (337)
T ss_dssp             EECTTSCEEEE
T ss_pred             EECCCCCEEEE
Confidence            99999985443

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.66  E-value=6.6e-14  Score=124.43  Aligned_cols=196  Identities=13%  Similarity=0.074  Sum_probs=139.2

Q ss_pred             CeeecCCceeeEEEeccceeeeeecccceeeEEeecCC-CCceEEEEcCCCCEEEEE-eCCCcEEEEeCC-CCeEEeecc
Q 046394            8 GYLEAEGVEKTWRIKQEAIAREVDILSSRNQYDIMLPE-LGPYTLDFTSSGRYMAAA-GCKGYPYFYNRD-GTELHCSKE   84 (378)
Q Consensus         8 ~~l~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~-~~v~~~~~sp~g~~l~~~-~~dg~i~iwd~~-~~~~~~~~~   84 (378)
                      |.-...+....+....++.|.+||+.+++....+..+. ..+..++|+|+|++++++ ..++.|.+||.. +..+..+..
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~   83 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL   83 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc
Confidence            33333344455556678999999999999888887653 268899999999876544 568899999954 555555553


Q ss_pred             CCC-------eeEEEE-----EEEEEeCC------------CeEEEEEcCCCc---EEEEEecCCCCeeEEEEcCCCCEE
Q 046394           85 HGE-------VLKLQF-----LLASINKL------------GQLRYQNVTMGE---IVGNFWTGLGRTDVIRVNPFNGVV  137 (378)
Q Consensus        85 ~~~-------~~~l~~-----~l~s~~~d------------~~i~iwd~~~~~---~~~~~~~~~~~v~~~~~s~~~~~l  137 (378)
                      +..       +..++|     .+++++.+            +.|.+||+.+++   .+..+. +...+.+++|+|+|+ +
T Consensus        84 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~-l  161 (349)
T 1jmx_B           84 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGS-L  161 (349)
T ss_dssp             CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSC-E
T ss_pred             ccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECCCCc-E
Confidence            321       467788     66666654            899999998844   333443 334688999999999 5


Q ss_pred             EEEcCCCe------------eeecC-------------------------------------------------------
Q 046394          138 SLGHSGGT------------MLCHQ-------------------------------------------------------  150 (378)
Q Consensus       138 ~~~~~d~~------------~~~h~-------------------------------------------------------  150 (378)
                      ++++.+-.            +..+.                                                       
T Consensus       162 ~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  241 (349)
T 1jmx_B          162 YVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLK  241 (349)
T ss_dssp             EEESSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETT
T ss_pred             EEccCcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEecc
Confidence            55443311            11110                                                       


Q ss_pred             -------------CCEEEEEEec-CCCEEEEEECCCeEEEEEcCCceeeeee--cCCceEEEEecCCCccccC
Q 046394          151 -------------GPVSALAFHP-NGHLMATSGKDCKIKIWDLRKYEVLQTL--PGHAKTLDFSRKDSGDFSG  207 (378)
Q Consensus       151 -------------~~v~~~~~sp-~g~~l~t~~~d~~i~iwd~~~~~~~~~~--~~~i~~~~~sp~g~~~~~~  207 (378)
                                   ..+.+++|+| +|++++++  ++.|.+||+.+++.+..+  ...+.+++|+|+|.+.+..
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~  312 (349)
T 1jmx_B          242 TGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLG  312 (349)
T ss_dssp             TCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEE
T ss_pred             CCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCCCCccceEECCCCCEEEEe
Confidence                         1345677889 99998888  889999999999988877  5668899999999765443

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.61  E-value=2.2e-15  Score=147.73  Aligned_cols=198  Identities=12%  Similarity=0.069  Sum_probs=130.4

Q ss_pred             eEEEEcCCCCEEEEEeCCCcEEEEeCC-CCeEEeeccCCC----eeEEEE-----EEEEEeC---------CCeEEEEEc
Q 046394           49 YTLDFTSSGRYMAAAGCKGYPYFYNRD-GTELHCSKEHGE----VLKLQF-----LLASINK---------LGQLRYQNV  109 (378)
Q Consensus        49 ~~~~~sp~g~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~----~~~l~~-----~l~s~~~---------d~~i~iwd~  109 (378)
                      .+++|+|+|.+++ .+.|+.|++||.. +.....+..+..    +.+++|     .|++++.         ++.|++||+
T Consensus        19 ~~~~~s~dg~~~~-~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~   97 (719)
T 1z68_A           19 FFPNWISGQEYLH-QSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDL   97 (719)
T ss_dssp             CCCEESSSSEEEE-ECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred             CccEECCCCeEEE-EcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEEC
Confidence            3789999996555 4569999999964 455555554433    578888     6776665         789999999


Q ss_pred             CCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe--------------eeecCCCE-----------------EEEEE
Q 046394          110 TMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT--------------MLCHQGPV-----------------SALAF  158 (378)
Q Consensus       110 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~--------------~~~h~~~v-----------------~~~~~  158 (378)
                      .+++.+.... ....+..++|||||+.|+.+..+..              ..++...|                 .+++|
T Consensus        98 ~~g~~~~~~~-l~~~~~~~~~SPDG~~la~~~~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~w  176 (719)
T 1z68_A           98 SNGEFVRGNE-LPRPIQYLCWSPVGSKLAYVYQNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWW  176 (719)
T ss_dssp             TTTEECCSSC-CCSSBCCEEECSSTTCEEEEETTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEE
T ss_pred             CCCcccccee-cCcccccceECCCCCEEEEEECCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEE
Confidence            9887621111 1256889999999999988764322              11222222                 48999


Q ss_pred             ecCCCEEEEEECCC----------------------------------eEEEEEcCCceee---e-----ee---cCCce
Q 046394          159 HPNGHLMATSGKDC----------------------------------KIKIWDLRKYEVL---Q-----TL---PGHAK  193 (378)
Q Consensus       159 sp~g~~l~t~~~d~----------------------------------~i~iwd~~~~~~~---~-----~~---~~~i~  193 (378)
                      ||||++|++++.|.                                  .|++||+.+++..   .     .+   ...+.
T Consensus       177 SPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (719)
T 1z68_A          177 SPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFS  256 (719)
T ss_dssp             CTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEE
T ss_pred             CCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEE
Confidence            99999999988652                                  7889999987653   1     12   23578


Q ss_pred             EEEEecCCCcccc--------------C----CCCCceEEEe----eccCCccee-----eeEEcCCCCeEEE--ecCCC
Q 046394          194 TLDFSRKDSGDFS--------------G----SHNYNRYMGY----SMVKGYQIG-----KVSFRPYEDVLGI--GHSMG  244 (378)
Q Consensus       194 ~~~~sp~g~~~~~--------------~----~~~~~~~~~~----~~~~~~~v~-----~~~~sp~g~~l~~--~~~~g  244 (378)
                      +++|||||.+.+.              +    ..++......    .. +...+.     .+.|+|||+.|+.  +..+|
T Consensus       257 ~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g  335 (719)
T 1z68_A          257 WLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEES-RTGWAGGFFVSTPVFSYDAISYYKIFSDKDG  335 (719)
T ss_dssp             EEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEEC-SSSCSSSSSCCCCEECTTSSCEEEEEECTTS
T ss_pred             EeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEeccccc-CCceEccccCCccEECCCCCeEEEEEEccCC
Confidence            9999999864222              2    2122221111    12 444565     7899999996543  55566


Q ss_pred             eEEEE
Q 046394          245 VSGIL  249 (378)
Q Consensus       245 ~~~~~  249 (378)
                      ...++
T Consensus       336 ~~~l~  340 (719)
T 1z68_A          336 YKHIH  340 (719)
T ss_dssp             CEEEE
T ss_pred             ceEEE
Confidence            55444

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.60  E-value=6.2e-13  Score=115.69  Aligned_cols=209  Identities=14%  Similarity=0.060  Sum_probs=146.5

Q ss_pred             ceeeEEeecCCCCceEEEEcCCCC-EEEEEeCCCcEEEEeCCCCeEEeeccCCCe-eEEEE-----EEEEEeCCCeEEEE
Q 046394           35 SRNQYDIMLPELGPYTLDFTSSGR-YMAAAGCKGYPYFYNRDGTELHCSKEHGEV-LKLQF-----LLASINKLGQLRYQ  107 (378)
Q Consensus        35 ~~~~~~l~~~~~~v~~~~~sp~g~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~l~~-----~l~s~~~d~~i~iw  107 (378)
                      +..+..+..+...+.+++|+|+|+ +++++..++.|.+||..+. ...+..+... .+++|     ++++...++.|.+|
T Consensus        17 ~~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~   95 (296)
T 3e5z_A           17 GAEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQ   95 (296)
T ss_dssp             TCCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEE
T ss_pred             CCcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEE
Confidence            344455656666788999999998 6777888999999997776 6666666554 88888     66666667899999


Q ss_pred             EcCCCcEEEEEecC----CCCeeEEEEcCCCCEEEE----EcC-------------CCe------------eeecCCCEE
Q 046394          108 NVTMGEIVGNFWTG----LGRTDVIRVNPFNGVVSL----GHS-------------GGT------------MLCHQGPVS  154 (378)
Q Consensus       108 d~~~~~~~~~~~~~----~~~v~~~~~s~~~~~l~~----~~~-------------d~~------------~~~h~~~v~  154 (378)
                      |..+++........    ...++.++++|+|.++++    |+.             .+.            +..+.....
T Consensus        96 d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~  175 (296)
T 3e5z_A           96 REPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDGTLSAPIRDRVKPN  175 (296)
T ss_dssp             CSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTTSCEEEEECCCSSEE
T ss_pred             cCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCCCCEEEeecCCCCCc
Confidence            99888765433221    235678999999998887    321             112            233445678


Q ss_pred             EEEEecCCCEEEEEECCCeEEEEEcC-Ccee---eeee---cCCceEEEEecCCCcc--------ccCCCCCceEEEeec
Q 046394          155 ALAFHPNGHLMATSGKDCKIKIWDLR-KYEV---LQTL---PGHAKTLDFSRKDSGD--------FSGSHNYNRYMGYSM  219 (378)
Q Consensus       155 ~~~~sp~g~~l~t~~~d~~i~iwd~~-~~~~---~~~~---~~~i~~~~~sp~g~~~--------~~~~~~~~~~~~~~~  219 (378)
                      .++|+|+|+.+++.+.++.|.+||+. ++.+   ...+   ...+..++++++|.+.        +|+.. +..+..+..
T Consensus       176 gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~v~~~~~~-g~~~~~~~~  254 (296)
T 3e5z_A          176 GLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASAGDGVHVLTPD-GDELGRVLT  254 (296)
T ss_dssp             EEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEETTEEEEECTT-SCEEEEEEC
T ss_pred             cEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEcCCeEEEECCC-CCEEEEEEC
Confidence            99999999999777788999999997 4544   2222   3456789999998752        33332 344445544


Q ss_pred             cCCcceeeeEE-cCCCCeEEEecCCCeEE
Q 046394          220 VKGYQIGKVSF-RPYEDVLGIGHSMGVSG  247 (378)
Q Consensus       220 ~~~~~v~~~~~-sp~g~~l~~~~~~g~~~  247 (378)
                       +.. +++++| +|++..|.+++.+++..
T Consensus       255 -~~~-~~~~~f~~~d~~~L~v~t~~~l~~  281 (296)
T 3e5z_A          255 -PQT-TSNLCFGGPEGRTLYMTVSTEFWS  281 (296)
T ss_dssp             -SSC-CCEEEEESTTSCEEEEEETTEEEE
T ss_pred             -CCC-ceeEEEECCCCCEEEEEcCCeEEE
Confidence             444 888999 58888887777776443

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.60  E-value=9.4e-13  Score=113.87  Aligned_cols=162  Identities=9%  Similarity=0.085  Sum_probs=121.3

Q ss_pred             CCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEeecc------CC-CeeEEEE------EEEEEeC-CCeEEEEEc
Q 046394           44 PELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTELHCSKE------HG-EVLKLQF------LLASINK-LGQLRYQNV  109 (378)
Q Consensus        44 ~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~~~------~~-~~~~l~~------~l~s~~~-d~~i~iwd~  109 (378)
                      +-..+.+++++|+|+++++...++.|.+||.++..+..+..      +. .+..+++      ++++... ++.|.+|| 
T Consensus        28 ~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-  106 (286)
T 1q7f_A           28 QFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-  106 (286)
T ss_dssp             CBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-
T ss_pred             ccCCCceEEECCCCCEEEEECCCCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-
Confidence            34578999999999988888889999999988887776643      11 3467776      4444433 78999999 


Q ss_pred             CCCcEEEEEec-CCCCeeEEEEcCCCCEEEEEcCCCe-------------ee--ecCCCEEEEEEecCCCEEEEEECCCe
Q 046394          110 TMGEIVGNFWT-GLGRTDVIRVNPFNGVVSLGHSGGT-------------ML--CHQGPVSALAFHPNGHLMATSGKDCK  173 (378)
Q Consensus       110 ~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~d~~-------------~~--~h~~~v~~~~~sp~g~~l~t~~~d~~  173 (378)
                      .+++.+..+.. +...+..++++|+|.++++...++.             +.  .+...+.+++++|+|+++++.+.++.
T Consensus       107 ~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~  186 (286)
T 1q7f_A          107 QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHC  186 (286)
T ss_dssp             TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTE
T ss_pred             CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCE
Confidence            57777777643 3357899999999998777766554             11  23356899999999998888888999


Q ss_pred             EEEEEcCCceeeeee--c---CCceEEEEecCCCccccC
Q 046394          174 IKIWDLRKYEVLQTL--P---GHAKTLDFSRKDSGDFSG  207 (378)
Q Consensus       174 i~iwd~~~~~~~~~~--~---~~i~~~~~sp~g~~~~~~  207 (378)
                      |.+||. ++..+..+  .   ..+..++++|+|.+.+.+
T Consensus       187 i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~  224 (286)
T 1q7f_A          187 VKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIAD  224 (286)
T ss_dssp             EEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEE
T ss_pred             EEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEe
Confidence            999997 45666666  2   467899999999764444

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.60  E-value=1.4e-12  Score=115.34  Aligned_cols=198  Identities=9%  Similarity=-0.042  Sum_probs=139.5

Q ss_pred             CCceEEEEcCCCCEEEEEeCC------------------------CcEEEEeC-CCCeEEeecc-C-CCeeEEEE-----
Q 046394           46 LGPYTLDFTSSGRYMAAAGCK------------------------GYPYFYNR-DGTELHCSKE-H-GEVLKLQF-----   93 (378)
Q Consensus        46 ~~v~~~~~sp~g~~l~~~~~d------------------------g~i~iwd~-~~~~~~~~~~-~-~~~~~l~~-----   93 (378)
                      +.|.+++++|+|+++++.+.+                        +.|.+||. ++..+..+.. + ..+..+++     
T Consensus        24 ~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~  103 (329)
T 3fvz_A           24 GQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGN  103 (329)
T ss_dssp             SCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSC
T ss_pred             CCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCCC
Confidence            578999999999988887776                        47999996 4776655542 2 23588888     


Q ss_pred             EEEEEeCCCeEEEEEcCCCc-EEEEEe---------cCCCCeeEEEEcC-CCCEEEEEc-CCCe-------------eee
Q 046394           94 LLASINKLGQLRYQNVTMGE-IVGNFW---------TGLGRTDVIRVNP-FNGVVSLGH-SGGT-------------MLC  148 (378)
Q Consensus        94 ~l~s~~~d~~i~iwd~~~~~-~~~~~~---------~~~~~v~~~~~s~-~~~~l~~~~-~d~~-------------~~~  148 (378)
                      ++++...++.|.+||..... .+..+.         .+...+..++++| ++.++++.+ .++.             +..
T Consensus       104 l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g~~~~~~~~  183 (329)
T 3fvz_A          104 YWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSGKFVTQWGE  183 (329)
T ss_dssp             EEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTSCEEEEECE
T ss_pred             EEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCEEEEecc
Confidence            77888888999999985432 455552         2334688999999 778777775 4554             111


Q ss_pred             ----------cCCCEEEEEEecC-CCEEEEEECCCeEEEEEcCCceeeeee-----cCCceEEEEec------CCCcc--
Q 046394          149 ----------HQGPVSALAFHPN-GHLMATSGKDCKIKIWDLRKYEVLQTL-----PGHAKTLDFSR------KDSGD--  204 (378)
Q Consensus       149 ----------h~~~v~~~~~sp~-g~~l~t~~~d~~i~iwd~~~~~~~~~~-----~~~i~~~~~sp------~g~~~--  204 (378)
                                +-.....|+++|+ |+++++...++.|++||..+++.+..+     ...+..++|+|      +|...  
T Consensus       184 ~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~  263 (329)
T 3fvz_A          184 ESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFG  263 (329)
T ss_dssp             ECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECCCCTT
T ss_pred             CCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCCEEec
Confidence                      1123789999998 777888888999999999989988887     24677888988      55433  


Q ss_pred             --------ccCCCCCceEEEee---ccCCcceeeeEEcCCCCeEEEecCCC
Q 046394          205 --------FSGSHNYNRYMGYS---MVKGYQIGKVSFRPYEDVLGIGHSMG  244 (378)
Q Consensus       205 --------~~~~~~~~~~~~~~---~~~~~~v~~~~~sp~g~~l~~~~~~g  244 (378)
                              +|+..++..+..+.   . +...+..++++|+|.++++...++
T Consensus       264 ~~~~~~v~~~~~~~g~~~~~~~~~~~-~~~~p~~ia~~~dG~lyvad~~~~  313 (329)
T 3fvz_A          264 DQEPVQGFVMNFSSGEIIDVFKPVRK-HFDMPHDIVASEDGTVYIGDAHTN  313 (329)
T ss_dssp             CSCCCCEEEEETTTCCEEEEECCSSS-CCSSEEEEEECTTSEEEEEESSSC
T ss_pred             cCCCcEEEEEEcCCCeEEEEEcCCCC-ccCCeeEEEECCCCCEEEEECCCC
Confidence                    33334445554442   2 455688899999994444444443

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.60  E-value=2.1e-13  Score=123.24  Aligned_cols=181  Identities=9%  Similarity=-0.006  Sum_probs=128.1

Q ss_pred             eeeeeecccceeeEEeecCCCCceE-----EEEcCCCCEEEEEeC-CC--cEEEEeCCCCeEEeec-cCCCe-eEEEE--
Q 046394           26 IAREVDILSSRNQYDIMLPELGPYT-----LDFTSSGRYMAAAGC-KG--YPYFYNRDGTELHCSK-EHGEV-LKLQF--   93 (378)
Q Consensus        26 ~i~~~d~~~~~~~~~l~~~~~~v~~-----~~~sp~g~~l~~~~~-dg--~i~iwd~~~~~~~~~~-~~~~~-~~l~~--   93 (378)
                      ....+|..++..+..+..|...+..     .+|||||++|++++. +|  .|.+||..+.....+. ++... ..+.|  
T Consensus        11 ~~~~~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~sp   90 (388)
T 3pe7_A           11 FDTYQDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSP   90 (388)
T ss_dssp             CEEEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECT
T ss_pred             ceEEecCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcC
Confidence            3344677888888888888666655     889999999998887 66  3888897655554444 44433 46778  


Q ss_pred             ---EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEE--EcCCCCEEEEEc----------------------CCCe-
Q 046394           94 ---LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIR--VNPFNGVVSLGH----------------------SGGT-  145 (378)
Q Consensus        94 ---~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~--~s~~~~~l~~~~----------------------~d~~-  145 (378)
                         .|+.++.++.|++||+.+++....+..+...+....  ++|++..++...                      .+.. 
T Consensus        91 dg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  170 (388)
T 3pe7_A           91 DDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRL  170 (388)
T ss_dssp             TSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEE
T ss_pred             CCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceE
Confidence               888888889999999999987776665555554443  489998876421                      1111 


Q ss_pred             ------------eeecCCCEEEEEEec-CCCEEEEEECC------CeEEEEEcCCceeeeee--c--CCceEEEEecCCC
Q 046394          146 ------------MLCHQGPVSALAFHP-NGHLMATSGKD------CKIKIWDLRKYEVLQTL--P--GHAKTLDFSRKDS  202 (378)
Q Consensus       146 ------------~~~h~~~v~~~~~sp-~g~~l~t~~~d------~~i~iwd~~~~~~~~~~--~--~~i~~~~~sp~g~  202 (378)
                                  +..+...+..++|+| +|+.|+.++.+      ..|.++|+..+......  .  ..+..+.|||||.
T Consensus       171 ~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~  250 (388)
T 3pe7_A          171 MRVDLKTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGS  250 (388)
T ss_dssp             EEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTSS
T ss_pred             EEEECCCCceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceECCCCC
Confidence                        445667789999999 99999887754      36888887655433222  2  2477889999998


Q ss_pred             cccc
Q 046394          203 GDFS  206 (378)
Q Consensus       203 ~~~~  206 (378)
                      ..++
T Consensus       251 ~l~~  254 (388)
T 3pe7_A          251 ALVY  254 (388)
T ss_dssp             CEEE
T ss_pred             EEEE
Confidence            6433

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.57  E-value=1.1e-12  Score=117.76  Aligned_cols=204  Identities=14%  Similarity=0.099  Sum_probs=129.2

Q ss_pred             eEEEeccceeeeeecc-cceeeEEeecC-CCCceEEEEcCCCCE--EEEEe-------------CCCcEEEEeC--CCCe
Q 046394           18 TWRIKQEAIAREVDIL-SSRNQYDIMLP-ELGPYTLDFTSSGRY--MAAAG-------------CKGYPYFYNR--DGTE   78 (378)
Q Consensus        18 ~~~~~~~~~i~~~d~~-~~~~~~~l~~~-~~~v~~~~~sp~g~~--l~~~~-------------~dg~i~iwd~--~~~~   78 (378)
                      .|....+ .+.+|++. +++........ .+.+.+++|+|+|++  +++++             .+|.+.+|++  ++..
T Consensus        54 l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~  132 (365)
T 1jof_A           54 IYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKL  132 (365)
T ss_dssp             EEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCE
T ss_pred             EEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcC
Confidence            4444444 89999997 77654333211 134677999999994  45553             6889999995  4554


Q ss_pred             EEeecc----C-CCeeEEEE-----EEEEEe-CCCeEEEEEcC-CCcEE--EEEec--CCCCeeEEEEcCCCCEEEEEcC
Q 046394           79 LHCSKE----H-GEVLKLQF-----LLASIN-KLGQLRYQNVT-MGEIV--GNFWT--GLGRTDVIRVNPFNGVVSLGHS  142 (378)
Q Consensus        79 ~~~~~~----~-~~~~~l~~-----~l~s~~-~d~~i~iwd~~-~~~~~--~~~~~--~~~~v~~~~~s~~~~~l~~~~~  142 (378)
                      ...+..    + ..+.+++|     ++++++ .++.|.+||+. +++..  ..+..  +...+..++|+|+|+++++++.
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~  212 (365)
T 1jof_A          133 EKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALME  212 (365)
T ss_dssp             EEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEET
T ss_pred             cceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEEC
Confidence            433331    2 23588888     555544 46899999998 77653  33432  3566899999999998887764


Q ss_pred             -CCe---e--e---------------------ecCC------CEEEEE-EecCCCEEEEEECC-C-----eEEEEEcC-C
Q 046394          143 -GGT---M--L---------------------CHQG------PVSALA-FHPNGHLMATSGKD-C-----KIKIWDLR-K  181 (378)
Q Consensus       143 -d~~---~--~---------------------~h~~------~v~~~~-~sp~g~~l~t~~~d-~-----~i~iwd~~-~  181 (378)
                       ++.   +  .                     +|..      .+..++ |+|||++|++++.+ +     +|.+|++. +
T Consensus       213 ~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~  292 (365)
T 1jof_A          213 AGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDC  292 (365)
T ss_dssp             TTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTT
T ss_pred             CCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCC
Confidence             333   0  0                     0111      377899 99999988776543 2     89999986 4


Q ss_pred             ceeeeeecCCceEEEEecCCCccccCCCCCceEEEeeccCCcceeeeEEcC---CCCeEEEecCC-CeEEEE
Q 046394          182 YEVLQTLPGHAKTLDFSRKDSGDFSGSHNYNRYMGYSMVKGYQIGKVSFRP---YEDVLGIGHSM-GVSGIL  249 (378)
Q Consensus       182 ~~~~~~~~~~i~~~~~sp~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp---~g~~l~~~~~~-g~~~~~  249 (378)
                      +++...                          ...... +...+..++|+|   ||++|++++.+ +.+.+|
T Consensus       293 g~~~~~--------------------------~~~~~~-~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~  337 (365)
T 1jof_A          293 GSIEKQ--------------------------LFLSPT-PTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIY  337 (365)
T ss_dssp             SCEEEE--------------------------EEEEEC-SSCCTTCCCEEECTTCTTEEEEECSSSCEEEEE
T ss_pred             CCEEEe--------------------------eeeeec-CCCCcccceecCCCcCCCEEEEEEcCCCeEEEE
Confidence            432110                          001111 233467789999   89888777654 444444

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.57  E-value=5.8e-12  Score=112.75  Aligned_cols=188  Identities=12%  Similarity=0.064  Sum_probs=122.0

Q ss_pred             eeEEEecc----ceeeeeeccc--ce--eeEEeecCCCCceEEEEcCCCCEEEEEe-CCCcEEEEeCC-CCeEEe-----
Q 046394           17 KTWRIKQE----AIAREVDILS--SR--NQYDIMLPELGPYTLDFTSSGRYMAAAG-CKGYPYFYNRD-GTELHC-----   81 (378)
Q Consensus        17 ~~~~~~~~----~~i~~~d~~~--~~--~~~~l~~~~~~v~~~~~sp~g~~l~~~~-~dg~i~iwd~~-~~~~~~-----   81 (378)
                      ..|....+    +.+.+|++..  +.  .+.....+...+..+++  ++++|++++ .++.|.+|++. ...+..     
T Consensus        63 ~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~  140 (361)
T 3scy_A           63 FVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVI  140 (361)
T ss_dssp             EEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEE
T ss_pred             EEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeE
Confidence            34554443    6899998865  33  33344445567778888  788888776 47899999953 222211     


Q ss_pred             -eccC---------CCeeEEEE------EEEEEeCCCeEEEEEcCCCc-------EE-----EE-EecCCCCeeEEEEcC
Q 046394           82 -SKEH---------GEVLKLQF------LLASINKLGQLRYQNVTMGE-------IV-----GN-FWTGLGRTDVIRVNP  132 (378)
Q Consensus        82 -~~~~---------~~~~~l~~------~l~s~~~d~~i~iwd~~~~~-------~~-----~~-~~~~~~~v~~~~~s~  132 (378)
                       ..+.         ..+.+++|      +++++..++.|.+|++....       ..     .. .......+..++|+|
T Consensus       141 ~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~sp  220 (361)
T 3scy_A          141 EFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNS  220 (361)
T ss_dssp             ECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECT
T ss_pred             EccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcC
Confidence             1111         11256888      44555568999999987543       11     11 223345678999999


Q ss_pred             CCCEEEEEcC-CCe-------------------eeecCCCEEEEEEecCCCEEEEEEC--CCeEEEEEcC--Cce--eee
Q 046394          133 FNGVVSLGHS-GGT-------------------MLCHQGPVSALAFHPNGHLMATSGK--DCKIKIWDLR--KYE--VLQ  186 (378)
Q Consensus       133 ~~~~l~~~~~-d~~-------------------~~~h~~~v~~~~~sp~g~~l~t~~~--d~~i~iwd~~--~~~--~~~  186 (378)
                      +|+++++++. ++.                   ...+...+.+++|+|+|++|+++..  ++.|.+|++.  ++.  .+.
T Consensus       221 dg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~  300 (361)
T 3scy_A          221 DGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVG  300 (361)
T ss_dssp             TSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEE
T ss_pred             CCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEee
Confidence            9998877764 444                   1112234679999999999877665  4899999996  444  344


Q ss_pred             ee--cCCceEEEEecCCCcccc
Q 046394          187 TL--PGHAKTLDFSRKDSGDFS  206 (378)
Q Consensus       187 ~~--~~~i~~~~~sp~g~~~~~  206 (378)
                      .+  ...+..++|+|||++.+.
T Consensus       301 ~~~~g~~~~~~~~spdg~~l~~  322 (361)
T 3scy_A          301 YQLTGIHPRNFIITPNGKYLLV  322 (361)
T ss_dssp             EEECSSCCCEEEECTTSCEEEE
T ss_pred             EecCCCCCceEEECCCCCEEEE
Confidence            44  347889999999986433

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.54  E-value=2.8e-12  Score=114.87  Aligned_cols=92  Identities=9%  Similarity=-0.029  Sum_probs=70.7

Q ss_pred             cceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeC----------CCcEEEEeC-CCCeEEeeccC-------
Q 046394           24 EAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGC----------KGYPYFYNR-DGTELHCSKEH-------   85 (378)
Q Consensus        24 ~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~----------dg~i~iwd~-~~~~~~~~~~~-------   85 (378)
                      ++.+.+||..+++.+..+..+.. . .++|+|||++|++++.          ++.|.+||. ++..+..+...       
T Consensus        30 d~~v~v~D~~t~~~~~~i~~g~~-p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g  107 (361)
T 2oiz_A           30 ESRVHVYDYTNGKFLGMVPTAFN-G-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGL  107 (361)
T ss_dssp             GCEEEEEETTTCCEEEEEECCEE-E-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBC
T ss_pred             cCeEEEEECCCCeEEEEecCCCC-C-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccC
Confidence            56899999999998888887643 4 9999999999998863          567999995 55666666532       


Q ss_pred             CCeeEEEE-----EEEEEe-C-CCeEEEEEcCCCcEEEE
Q 046394           86 GEVLKLQF-----LLASIN-K-LGQLRYQNVTMGEIVGN  117 (378)
Q Consensus        86 ~~~~~l~~-----~l~s~~-~-d~~i~iwd~~~~~~~~~  117 (378)
                      ..+..++|     +++++. . +++|.+||+.+++.+..
T Consensus       108 ~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~  146 (361)
T 2oiz_A          108 NYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVED  146 (361)
T ss_dssp             CCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEE
T ss_pred             CCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEE
Confidence            23467778     555554 3 68999999999988877

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.53  E-value=1e-11  Score=109.85  Aligned_cols=219  Identities=12%  Similarity=0.073  Sum_probs=145.6

Q ss_pred             EeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEeec-cCC-CeeEEEE-----
Q 046394           21 IKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTELHCSK-EHG-EVLKLQF-----   93 (378)
Q Consensus        21 ~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~-~~~~l~~-----   93 (378)
                      +..+..++.|   .+.....+..+...+.+++|+|+|++++++..++.|.+||..+..+..+. .+. .+.+++|     
T Consensus        23 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~   99 (333)
T 2dg1_A           23 IISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGR   99 (333)
T ss_dssp             CCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSC
T ss_pred             EeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCc
Confidence            3456666777   34556677777778899999999997778888899999997654444332 333 3588888     


Q ss_pred             EEEEEeCC----CeEEEEEcCCCcEEEEEe--cCCCCeeEEEEcCCCCEEEEEcCC------Ce-------------eee
Q 046394           94 LLASINKL----GQLRYQNVTMGEIVGNFW--TGLGRTDVIRVNPFNGVVSLGHSG------GT-------------MLC  148 (378)
Q Consensus        94 ~l~s~~~d----~~i~iwd~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~d------~~-------------~~~  148 (378)
                      ++++...+    +.|.+||..++.....+.  .....+..++++|+|.++++...+      +.             +..
T Consensus       100 l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  179 (333)
T 2dg1_A          100 LFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQ  179 (333)
T ss_dssp             EEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEE
T ss_pred             EEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeec
Confidence            56665555    689999998877553333  234578999999999887776531      11             112


Q ss_pred             cCCCEEEEEEecCCCEEE-EEECCCeEEEEEcCC-ceeee--------eec--CCceEEEEecCCCccc----------c
Q 046394          149 HQGPVSALAFHPNGHLMA-TSGKDCKIKIWDLRK-YEVLQ--------TLP--GHAKTLDFSRKDSGDF----------S  206 (378)
Q Consensus       149 h~~~v~~~~~sp~g~~l~-t~~~d~~i~iwd~~~-~~~~~--------~~~--~~i~~~~~sp~g~~~~----------~  206 (378)
                      +...+..++|+|+|++|+ +.+.++.|.+||+.+ +..+.        .+.  ..+..++++++|.+.+          |
T Consensus       180 ~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~  259 (333)
T 2dg1_A          180 NISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVF  259 (333)
T ss_dssp             EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEE
T ss_pred             CCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEE
Confidence            223567899999998654 455678999999964 33221        111  3577899999887522          3


Q ss_pred             CCCCCceEEEeeccCCc------ceeeeEEcCCCCeEEEecCCC
Q 046394          207 GSHNYNRYMGYSMVKGY------QIGKVSFRPYEDVLGIGHSMG  244 (378)
Q Consensus       207 ~~~~~~~~~~~~~~~~~------~v~~~~~sp~g~~l~~~~~~g  244 (378)
                      +. ....+..+.. +..      .+.+++|+||+..|.+++.+|
T Consensus       260 d~-~g~~~~~~~~-~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g  301 (333)
T 2dg1_A          260 NK-RGYPIGQILI-PGRDEGHMLRSTHPQFIPGTNQLIICSNDI  301 (333)
T ss_dssp             CT-TSCEEEEEEC-TTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred             CC-CCCEEEEEEc-CCCccccccCcceEEECCCCCEEEEEeCcc
Confidence            32 2333344433 222      588999999987776555553

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.52  E-value=1.8e-13  Score=134.43  Aligned_cols=176  Identities=6%  Similarity=-0.037  Sum_probs=118.7

Q ss_pred             ccceeeeeecccceeeEEeecCCCCc-----eEEEEcCCCCEEEEEeCC---------CcEEEEeCCCCeEEeeccCCCe
Q 046394           23 QEAIAREVDILSSRNQYDIMLPELGP-----YTLDFTSSGRYMAAAGCK---------GYPYFYNRDGTELHCSKEHGEV   88 (378)
Q Consensus        23 ~~~~i~~~d~~~~~~~~~l~~~~~~v-----~~~~~sp~g~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~~~~   88 (378)
                      .++.|.+||+.+++....+.+|....     ..++|||||++|++++.+         +.+.+||..+..+..+..+.+.
T Consensus        34 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~l~~~~~~  113 (740)
T 4a5s_A           34 QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIPNN  113 (740)
T ss_dssp             ETTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCTT
T ss_pred             cCCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEEcccCCCc
Confidence            38999999999999887788876432     347899999999998875         5678999877777677776654


Q ss_pred             -eEEEE-----EEEEEeCCCeEEEEEcCCCcEEEEE-ecCCCCe-----------------eEEEEcCCCCEEEEEcCCC
Q 046394           89 -LKLQF-----LLASINKLGQLRYQNVTMGEIVGNF-WTGLGRT-----------------DVIRVNPFNGVVSLGHSGG  144 (378)
Q Consensus        89 -~~l~~-----~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~v-----------------~~~~~s~~~~~l~~~~~d~  144 (378)
                       ..++|     .||.+ .|+.|++||+.++...+.. .++...+                 ..+.|||||+.|+.++.|.
T Consensus       114 ~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~  192 (740)
T 4a5s_A          114 TQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFND  192 (740)
T ss_dssp             EEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEEC
T ss_pred             ceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcc
Confidence             88889     66665 4689999999888755422 1222212                 3589999999998876554


Q ss_pred             e------ee------ecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCC---cee--eeee---------cCCceEEEEe
Q 046394          145 T------ML------CHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRK---YEV--LQTL---------PGHAKTLDFS  198 (378)
Q Consensus       145 ~------~~------~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~---~~~--~~~~---------~~~i~~~~~s  198 (378)
                      .      +.      .+...+..+.+.+.|..    .....|.+||+.+   +..  ...+         ...+..++||
T Consensus       193 ~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~----~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ws  268 (740)
T 4a5s_A          193 TEVPLIEYSFYSDESLQYPKTVRVPYPKAGAV----NPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWA  268 (740)
T ss_dssp             TTCCEEEEEECCSTTCSSCEEEEEECCBTTSC----CCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEE
T ss_pred             cCCceEEEEeecCCCCCCCcceeecCCCCcCc----CCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEe
Confidence            3      10      02334555666555532    1122578888877   631  1222         1236778888


Q ss_pred             cCCCc
Q 046394          199 RKDSG  203 (378)
Q Consensus       199 p~g~~  203 (378)
                      |||+.
T Consensus       269 pdg~~  273 (740)
T 4a5s_A          269 TQERI  273 (740)
T ss_dssp             ETTEE
T ss_pred             CCCeE
Confidence            88873

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.51  E-value=3.2e-12  Score=115.60  Aligned_cols=180  Identities=11%  Similarity=-0.083  Sum_probs=116.3

Q ss_pred             ceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCCCeE-EeeccCCCe-e---EEEE----E-
Q 046394           25 AIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTEL-HCSKEHGEV-L---KLQF----L-   94 (378)
Q Consensus        25 ~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~-~---~l~~----~-   94 (378)
                      ..+.+||+.+++.......+......+.|||||++|+.++.++.|++||..+... .....+... .   .+.|    . 
T Consensus        60 ~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~  139 (396)
T 3c5m_A           60 RNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKL  139 (396)
T ss_dssp             CEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEE
T ss_pred             ceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCcc
Confidence            4678889988875443333322333488999999999999999999999655433 333334332 1   1221    0 


Q ss_pred             ----------------EEE-----EeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcC-CCCEEEEEcCCC------e-
Q 046394           95 ----------------LAS-----INKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNP-FNGVVSLGHSGG------T-  145 (378)
Q Consensus        95 ----------------l~s-----~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~------~-  145 (378)
                                      ++.     ...+..|.+||+.+++..... .+...+..+.|+| ++..|+..+.++      . 
T Consensus       140 ~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l  218 (396)
T 3c5m_A          140 VGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARM  218 (396)
T ss_dssp             EEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCC
T ss_pred             ccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceE
Confidence                            000     034568999999988765544 4557789999999 787666554321      1 


Q ss_pred             ------------eeec--CCCEEEEEEecCCCEEEEEECC-----CeEEEEEcCCceeeeee-cCCceEEEEec-CCCcc
Q 046394          146 ------------MLCH--QGPVSALAFHPNGHLMATSGKD-----CKIKIWDLRKYEVLQTL-PGHAKTLDFSR-KDSGD  204 (378)
Q Consensus       146 ------------~~~h--~~~v~~~~~sp~g~~l~t~~~d-----~~i~iwd~~~~~~~~~~-~~~i~~~~~sp-~g~~~  204 (378)
                                  +..+  ...+..++|+|+|++|+.++.+     +.|.+||+.+++..... ..... +.|+| ||.+.
T Consensus       219 ~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~-~~~s~~dg~~l  297 (396)
T 3c5m_A          219 WLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPPCS-HLMSNFDGSLM  297 (396)
T ss_dssp             EEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCSEE-EEEECSSSSEE
T ss_pred             EEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCCCCC-CCccCCCCceE
Confidence                        1112  1247788999999988777654     45999999887654333 12233 89999 99865


Q ss_pred             cc
Q 046394          205 FS  206 (378)
Q Consensus       205 ~~  206 (378)
                      +.
T Consensus       298 ~~  299 (396)
T 3c5m_A          298 VG  299 (396)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.50  E-value=5.7e-12  Score=113.07  Aligned_cols=219  Identities=11%  Similarity=0.031  Sum_probs=133.7

Q ss_pred             CCCceEEEEcCCCCEEEEEeCCCcEEEEeC--CCCeEEeec--cCCCeeEEEE-------EEEEEe-------------C
Q 046394           45 ELGPYTLDFTSSGRYMAAAGCKGYPYFYNR--DGTELHCSK--EHGEVLKLQF-------LLASIN-------------K  100 (378)
Q Consensus        45 ~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~--~~~~~~~~~--~~~~~~~l~~-------~l~s~~-------------~  100 (378)
                      ...+..++|+|+|++|++++.+ .|.+|+.  ++.......  .+..+.+++|       ++++++             .
T Consensus        39 ~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~  117 (365)
T 1jof_A           39 DEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKF  117 (365)
T ss_dssp             TCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSS
T ss_pred             CCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecC
Confidence            3468899999999999999887 8999995  455433222  1122334444       234443             6


Q ss_pred             CCeEEEEEcC-CCcEEEEEe----cCCCCeeEEEEcCCCCEEEEEcC-CCe-----e------------e--ecCCCEEE
Q 046394          101 LGQLRYQNVT-MGEIVGNFW----TGLGRTDVIRVNPFNGVVSLGHS-GGT-----M------------L--CHQGPVSA  155 (378)
Q Consensus       101 d~~i~iwd~~-~~~~~~~~~----~~~~~v~~~~~s~~~~~l~~~~~-d~~-----~------------~--~h~~~v~~  155 (378)
                      ++.+.+|++. +++....+.    .+...+.+++|+|+|++++++.. ++.     +            .  .|...+..
T Consensus       118 ~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~  197 (365)
T 1jof_A          118 AGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRW  197 (365)
T ss_dssp             CCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEE
T ss_pred             CceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCE
Confidence            8999999997 466544433    24567899999999998877643 222     1            1  12456889


Q ss_pred             EEEecCCCEEEEEEC-CCeEEEEEcC--Cceee---ee---ec------C-------CceEEE-EecCCCccccCCCCCc
Q 046394          156 LAFHPNGHLMATSGK-DCKIKIWDLR--KYEVL---QT---LP------G-------HAKTLD-FSRKDSGDFSGSHNYN  212 (378)
Q Consensus       156 ~~~sp~g~~l~t~~~-d~~i~iwd~~--~~~~~---~~---~~------~-------~i~~~~-~sp~g~~~~~~~~~~~  212 (378)
                      ++|+|+|+++++++. ++.|.+|++.  ++++.   ..   ++      .       .+..++ |+|||++.+.......
T Consensus       198 ~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~  277 (365)
T 1jof_A          198 VAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANK  277 (365)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESS
T ss_pred             eEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCC
Confidence            999999999888775 7899999875  45542   12   21      1       377899 9999986433221111


Q ss_pred             -----eEEEeeccCCcceee----eEEcC-CCCeEEEecC--CCeEEEEEcCCCCcccccccCCC
Q 046394          213 -----RYMGYSMVKGYQIGK----VSFRP-YEDVLGIGHS--MGVSGILIPGSGEPNFDSWVANP  265 (378)
Q Consensus       213 -----~~~~~~~~~~~~v~~----~~~sp-~g~~l~~~~~--~g~~~~~~~~s~d~~i~~w~~~~  265 (378)
                           .+..+.......+..    +.... ....++..-.  ||. .+++....++.+.+|+.++
T Consensus       278 ~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~-~l~v~~~~~~~v~v~~~~~  341 (365)
T 1jof_A          278 FELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDE-WMAITDDQEGWLEIYRWKD  341 (365)
T ss_dssp             TTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTT-EEEEECSSSCEEEEEEEET
T ss_pred             CCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCC-EEEEEEcCCCeEEEEEEch
Confidence                 344443211222332    11111 1233443332  342 3555555668999998654

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.48  E-value=4.8e-11  Score=102.52  Aligned_cols=170  Identities=12%  Similarity=0.058  Sum_probs=128.1

Q ss_pred             eeeEEEeccceeeeeecccceeeEEeecCC-CCceEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEeeccCCC--eeEEE
Q 046394           16 EKTWRIKQEAIAREVDILSSRNQYDIMLPE-LGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTELHCSKEHGE--VLKLQ   92 (378)
Q Consensus        16 ~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~-~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~~l~   92 (378)
                      ...+..+.++.|.+||..+++.++.+..+. ..+.++.++|+|++|+  +.++.|..||.+|+.+..+..+..  +.++.
T Consensus         6 ~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~~G~~~W~~~~~~~~~~~~~~   83 (276)
T 3no2_A            6 HLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITRDGRELWNIAAPAGCEMQTAR   83 (276)
T ss_dssp             EEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECTTSCEEEEEECCTTCEEEEEE
T ss_pred             cEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECCCCCEEEEEcCCCCccccccE
Confidence            334445668899999999999999999876 4789999999999888  357789999999999998887532  36666


Q ss_pred             E-----EEEEEeC-CCeEEEEEcCCCcEEEEEecCC------CCeeEEEEcCCCCEEEEEcCCCe------------eee
Q 046394           93 F-----LLASINK-LGQLRYQNVTMGEIVGNFWTGL------GRTDVIRVNPFNGVVSLGHSGGT------------MLC  148 (378)
Q Consensus        93 ~-----~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~------~~v~~~~~s~~~~~l~~~~~d~~------------~~~  148 (378)
                      +     ++++.+. ++.|..+|. +|+.+..+....      .....+++.++|+++++...++.            ...
T Consensus        84 ~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~G~~~w~~~  162 (276)
T 3no2_A           84 ILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPNGQLLNSVK  162 (276)
T ss_dssp             ECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTTSCEEEEEE
T ss_pred             ECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCCCCEEEEEE
Confidence            6     6666665 778888885 788877775321      23455678888888888877766            112


Q ss_pred             cCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee
Q 046394          149 HQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL  188 (378)
Q Consensus       149 h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~  188 (378)
                      ....+.++.+.++|+++++++.++.|..+|..+|+.+.++
T Consensus       163 ~~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~  202 (276)
T 3no2_A          163 LSGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRV  202 (276)
T ss_dssp             CSSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEE
T ss_pred             CCCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEe
Confidence            2234566777888888888888888999998888877665

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.47  E-value=2.6e-10  Score=107.65  Aligned_cols=168  Identities=12%  Similarity=0.044  Sum_probs=125.5

Q ss_pred             EEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeC---CCCeEEeeccCCCeeEEEE---
Q 046394           20 RIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNR---DGTELHCSKEHGEVLKLQF---   93 (378)
Q Consensus        20 ~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~---~~~~~~~~~~~~~~~~l~~---   93 (378)
                      .-..++.|.++|..+++.+..+... ..+.++.|||||+++++++.++.|.+||.   ++..+..+.....+..++|   
T Consensus       172 ~~~~~~~V~viD~~t~~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P~~ia~s~~  250 (567)
T 1qks_A          172 TLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKM  250 (567)
T ss_dssp             EETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCS
T ss_pred             EeCCCCeEEEEECCCCeEEEEEeCC-CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCCceeEEccc
Confidence            3345789999999999998888764 56789999999999999999999999996   6667777765544433333   


Q ss_pred             -------EEEEEeCCCeEEEEEcCCCcEEEEEecC-----------CCCeeEEEEcCCCCEEEEEc-CCCee--------
Q 046394           94 -------LLASINKLGQLRYQNVTMGEIVGNFWTG-----------LGRTDVIRVNPFNGVVSLGH-SGGTM--------  146 (378)
Q Consensus        94 -------~l~s~~~d~~i~iwd~~~~~~~~~~~~~-----------~~~v~~~~~s~~~~~l~~~~-~d~~~--------  146 (378)
                             ++++...+++|.++|..+.+.+..+...           ...+..+..++++..+++.. ..|.+        
T Consensus       251 ~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~  330 (567)
T 1qks_A          251 EGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDL  330 (567)
T ss_dssp             TTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCS
T ss_pred             cCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCC
Confidence                   4555566799999999999988877632           12577888888876554443 33330        


Q ss_pred             -------eecCCCEEEEEEecCCCEEEEEE-CCCeEEEEEcCCceeeeee
Q 046394          147 -------LCHQGPVSALAFHPNGHLMATSG-KDCKIKIWDLRKYEVLQTL  188 (378)
Q Consensus       147 -------~~h~~~v~~~~~sp~g~~l~t~~-~d~~i~iwd~~~~~~~~~~  188 (378)
                             ........++.|+|+|++|+++. .++.|.++|+.+++++..+
T Consensus       331 ~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i  380 (567)
T 1qks_A          331 NNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIE  380 (567)
T ss_dssp             SEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEE
T ss_pred             ccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEE
Confidence                   11223456789999999987665 6789999999999887665

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.45  E-value=2.5e-11  Score=107.87  Aligned_cols=202  Identities=12%  Similarity=0.000  Sum_probs=128.6

Q ss_pred             cceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCC---C--cEEEEeCCCCeEEeeccCCCeeEEEE-----
Q 046394           24 EAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCK---G--YPYFYNRDGTELHCSKEHGEVLKLQF-----   93 (378)
Q Consensus        24 ~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~d---g--~i~iwd~~~~~~~~~~~~~~~~~l~~-----   93 (378)
                      +..|.+||+.+++.. .+    ..+.+++|||||++||.++.+   +  .|.+|+..+.....+..+..+..+.|     
T Consensus        42 ~~~l~~~d~~~~~~~-~l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~wspdg~  116 (347)
T 2gop_A           42 ENTIVIENLKNNARR-FI----ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKNIRSLEWNEDSR  116 (347)
T ss_dssp             EEEEEEEETTTCCEE-EE----ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESEEEEEEECTTSS
T ss_pred             cceEEEEeCCCCceE-Ec----ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCCccceeECCCCC
Confidence            567888999887643 33    468899999999999887654   3  48888866555444332222677888     


Q ss_pred             EEEEEeC---------------------------CCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCC--
Q 046394           94 LLASINK---------------------------LGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGG--  144 (378)
Q Consensus        94 ~l~s~~~---------------------------d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~--  144 (378)
                      .|+.++.                           ...|.+||+.+++.+..+.. . .+..++|+|+| +++++..+.  
T Consensus       117 ~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~  193 (347)
T 2gop_A          117 KLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREII  193 (347)
T ss_dssp             EEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSS
T ss_pred             EEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEeccccc
Confidence            5555542                           25799999998887455554 3 78899999999 777775431  


Q ss_pred             -----e-------------eeecCCCEEEEEEecCCCEEEEEECC--------CeEEEEEcCCceeeeee---cCCceE-
Q 046394          145 -----T-------------MLCHQGPVSALAFHPNGHLMATSGKD--------CKIKIWDLRKYEVLQTL---PGHAKT-  194 (378)
Q Consensus       145 -----~-------------~~~h~~~v~~~~~sp~g~~l~t~~~d--------~~i~iwd~~~~~~~~~~---~~~i~~-  194 (378)
                           .             +..+ ..+.+  ++|+|++|+.++.+        ..|.+||  +++.....   ...+.. 
T Consensus       194 ~~~~~~~~l~~~d~~~~~~l~~~-~~~~~--~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~  268 (347)
T 2gop_A          194 PQYFKFWDIYIWEDGKEEKMFEK-VSFYA--VDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQA  268 (347)
T ss_dssp             CCSSCCEEEEEEETTEEEEEEEE-ESEEE--EEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEE
T ss_pred             ccccccccEEEeCCCceEEeccC-cceee--ECCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCc
Confidence                 1             2222 33333  39999998887754        3688888  55543333   245665 


Q ss_pred             EEEecCCCc----------cccCCCCCceEEEeeccCCcceeeeEEcCCCCeEEEecCCCe
Q 046394          195 LDFSRKDSG----------DFSGSHNYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGV  245 (378)
Q Consensus       195 ~~~sp~g~~----------~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~  245 (378)
                      +.|+ || +          .+| ...+... .... +...|.+++|+|  .++++++.++.
T Consensus       269 ~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~-~~~~-~~~~v~~~~~s~--~~~~~~~~~~~  322 (347)
T 2gop_A          269 KIKD-GK-VYFTLFEEGSVNLY-IWDGEIK-PIAK-GRHWIMGFDVDE--IVVYLKETATR  322 (347)
T ss_dssp             EEET-TE-EEEEEEETTEEEEE-EESSSEE-EEEC-SSSEEEEEEESS--SEEEEEECSSS
T ss_pred             cEEc-Cc-EEEEEecCCcEEEE-EcCCceE-EEec-CCCeEEeeeeeC--cEEEEEcCCCC
Confidence            8888 77 4          233 2222222 2222 345688888988  55555555443

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.45  E-value=1.3e-12  Score=128.47  Aligned_cols=192  Identities=9%  Similarity=0.054  Sum_probs=124.5

Q ss_pred             CceEEEEcCCCCEEEEEeCCCcEEEEeC-CCCeEEeeccCCCe------eEEEE-----EEEEEeCC---------CeEE
Q 046394           47 GPYTLDFTSSGRYMAAAGCKGYPYFYNR-DGTELHCSKEHGEV------LKLQF-----LLASINKL---------GQLR  105 (378)
Q Consensus        47 ~v~~~~~sp~g~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~------~~l~~-----~l~s~~~d---------~~i~  105 (378)
                      ...++.|+|||.+|+++  ||.|++||. ++.....+.+|...      ..+.|     .|+.++.+         +.+.
T Consensus        18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~   95 (740)
T 4a5s_A           18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYD   95 (740)
T ss_dssp             CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred             cccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEE
Confidence            45689999999988886  899999994 56666666666521      33677     66666665         5677


Q ss_pred             EEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe--------------eeecCCCE-----------------E
Q 046394          106 YQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT--------------MLCHQGPV-----------------S  154 (378)
Q Consensus       106 iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~--------------~~~h~~~v-----------------~  154 (378)
                      +||+.+++.. .+..+...+..++|||||+.||.+.....              ..++...+                 .
T Consensus        96 ~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~  174 (740)
T 4a5s_A           96 IYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYS  174 (740)
T ss_dssp             EEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSB
T ss_pred             EEECCCCcEE-EcccCCCcceeeEECCCCCEEEEEECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCc
Confidence            9999998864 35566778999999999998888754332              11222223                 2


Q ss_pred             EEEEecCCCEEEEEECCCe-EEEEEcCCceeeeeecCCceEEEEecCCC------ccccCCCC---C---ceEEEeec--
Q 046394          155 ALAFHPNGHLMATSGKDCK-IKIWDLRKYEVLQTLPGHAKTLDFSRKDS------GDFSGSHN---Y---NRYMGYSM--  219 (378)
Q Consensus       155 ~~~~sp~g~~l~t~~~d~~-i~iwd~~~~~~~~~~~~~i~~~~~sp~g~------~~~~~~~~---~---~~~~~~~~--  219 (378)
                      ++.|||||++||.++.|.+ +.+|++...............+.|.+.|.      ..+|+..+   .   ........  
T Consensus       175 ~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~  254 (740)
T 4a5s_A          175 ALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPAS  254 (740)
T ss_dssp             CEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHH
T ss_pred             ceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCcc
Confidence            4899999999998886654 88887642111000011233444444443      24555554   4   22222110  


Q ss_pred             --cCCcceeeeEEcCCCCeEEEec
Q 046394          220 --VKGYQIGKVSFRPYEDVLGIGH  241 (378)
Q Consensus       220 --~~~~~v~~~~~sp~g~~l~~~~  241 (378)
                        .+...+..++|+|||+.++...
T Consensus       255 ~~~~~~~~~~~~wspdg~~~~~~~  278 (740)
T 4a5s_A          255 MLIGDHYLCDVTWATQERISLQWL  278 (740)
T ss_dssp             HHTSCEEEEEEEEEETTEEEEEEE
T ss_pred             CCCCCeEEEEEEEeCCCeEEEEEe
Confidence              1556789999999998666543

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.45  E-value=1.3e-11  Score=109.09  Aligned_cols=184  Identities=11%  Similarity=0.099  Sum_probs=132.1

Q ss_pred             ceeeeeecccceeeEEee-cCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCCC--eEEeec---------cCC-CeeEE
Q 046394           25 AIAREVDILSSRNQYDIM-LPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGT--ELHCSK---------EHG-EVLKL   91 (378)
Q Consensus        25 ~~i~~~d~~~~~~~~~l~-~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~--~~~~~~---------~~~-~~~~l   91 (378)
                      +.|.+||..+++....+. .+-..+..++++|+|+++++...++.|++||.++.  .+..+.         .+. .+..+
T Consensus        69 ~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~i  148 (329)
T 3fvz_A           69 DTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDV  148 (329)
T ss_dssp             CCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEE
T ss_pred             CcEEEEECCCCeEEeccCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEE
Confidence            368999998888766554 33457899999999998888888899999998776  555552         222 34788


Q ss_pred             EE------EEEEEe-CCCeEEEEEcCCCcEEEEEecCC----------CCeeEEEEcCC-CCEEEEEcCCCe--------
Q 046394           92 QF------LLASIN-KLGQLRYQNVTMGEIVGNFWTGL----------GRTDVIRVNPF-NGVVSLGHSGGT--------  145 (378)
Q Consensus        92 ~~------~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~----------~~v~~~~~s~~-~~~l~~~~~d~~--------  145 (378)
                      +|      ++++.+ .++.|.+|| .++..+..+....          ..+..++++|+ +.++++...++.        
T Consensus       149 a~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~  227 (329)
T 3fvz_A          149 AVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDT  227 (329)
T ss_dssp             EECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTT
T ss_pred             EEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCC
Confidence            88      666665 689999999 5777777764322          34889999999 566666555554        


Q ss_pred             ------e--eecCCCEEEEEEecCCCEEEEE-------ECCCeEEEEEcCCceeeeee------cCCceEEEEecCCCcc
Q 046394          146 ------M--LCHQGPVSALAFHPNGHLMATS-------GKDCKIKIWDLRKYEVLQTL------PGHAKTLDFSRKDSGD  204 (378)
Q Consensus       146 ------~--~~h~~~v~~~~~sp~g~~l~t~-------~~d~~i~iwd~~~~~~~~~~------~~~i~~~~~sp~g~~~  204 (378)
                            +  ..+...+.+++|+| +..+++.       +.+..|++||+.+++.+..+      ...+..++++|+|...
T Consensus       228 G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~ly  306 (329)
T 3fvz_A          228 KEFVREIKHASFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVY  306 (329)
T ss_dssp             CCEEEEECCTTTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEE
T ss_pred             CcEEEEEeccccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEE
Confidence                  1  12445688899999 4333333       33458999999999998887      1457899999999655


Q ss_pred             ccCCCC
Q 046394          205 FSGSHN  210 (378)
Q Consensus       205 ~~~~~~  210 (378)
                      +.+...
T Consensus       307 vad~~~  312 (329)
T 3fvz_A          307 IGDAHT  312 (329)
T ss_dssp             EEESSS
T ss_pred             EEECCC
Confidence            555433

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.45  E-value=8e-11  Score=101.63  Aligned_cols=203  Identities=12%  Similarity=0.050  Sum_probs=139.8

Q ss_pred             eeEEE-eccceeeeeecccceeeEEeec------CCCCceEEEE-cCCCCEEEEEeC-CCcEEEEeCCCCeEEeeccCC-
Q 046394           17 KTWRI-KQEAIAREVDILSSRNQYDIML------PELGPYTLDF-TSSGRYMAAAGC-KGYPYFYNRDGTELHCSKEHG-   86 (378)
Q Consensus        17 ~~~~~-~~~~~i~~~d~~~~~~~~~l~~------~~~~v~~~~~-sp~g~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~-   86 (378)
                      ..|.. ..++.|.+||.. +.....+..      +...+.++++ .+++.++++... ++.|.+||.++..+..+.... 
T Consensus        42 ~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~~g~~~~~~~~~~~  120 (286)
T 1q7f_A           42 DIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYGQFVRKFGATIL  120 (286)
T ss_dssp             CEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTTSCEEEEECTTTC
T ss_pred             CEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEECCCCcEEEEecCccC
Confidence            34433 456789999976 555555532      3356889999 577766665543 789999998888777664332 


Q ss_pred             -CeeEEEE-----EEEEEeCCCeEEEEEcCCCcEEEEEe--cCCCCeeEEEEcCCCCEEEEEcCCCe-------------
Q 046394           87 -EVLKLQF-----LLASINKLGQLRYQNVTMGEIVGNFW--TGLGRTDVIRVNPFNGVVSLGHSGGT-------------  145 (378)
Q Consensus        87 -~~~~l~~-----~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~d~~-------------  145 (378)
                       .+.++++     ++++...++.|.+||. +++.+..+.  .+...+..++++|+|.++++...++.             
T Consensus       121 ~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~  199 (286)
T 1q7f_A          121 QHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLRQ  199 (286)
T ss_dssp             SCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCCEEEE
T ss_pred             CCceEEEEeCCCCEEEEECCCCEEEEEcC-CCCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCCCEEEE
Confidence             3588888     7777777899999996 566666664  23456899999999997777665554             


Q ss_pred             ee--ecCCCEEEEEEecCCCEEEEEECCC-eEEEEEcCCceeeeeecCCceEEEEecCCCccccCCCCCceEEEeeccCC
Q 046394          146 ML--CHQGPVSALAFHPNGHLMATSGKDC-KIKIWDLRKYEVLQTLPGHAKTLDFSRKDSGDFSGSHNYNRYMGYSMVKG  222 (378)
Q Consensus       146 ~~--~h~~~v~~~~~sp~g~~l~t~~~d~-~i~iwd~~~~~~~~~~~~~i~~~~~sp~g~~~~~~~~~~~~~~~~~~~~~  222 (378)
                      +.  ++...+..++++|+|+++++...++ .|.+||. +++.+..+                          .. .. ..
T Consensus       200 ~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~--------------------------~~-~~-~~  250 (286)
T 1q7f_A          200 IGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISAL--------------------------ES-KV-KH  250 (286)
T ss_dssp             ESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEE--------------------------EE-SS-CC
T ss_pred             EccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEE--------------------------cc-cC-CC
Confidence            11  1225688999999999888888886 9999995 34433322                          00 01 12


Q ss_pred             cceeeeEEcCCCCeEEEecCCCeEEEEEc
Q 046394          223 YQIGKVSFRPYEDVLGIGHSMGVSGILIP  251 (378)
Q Consensus       223 ~~v~~~~~sp~g~~l~~~~~~g~~~~~~~  251 (378)
                      ..+.+++|+|+|.++++ +.++.+.+|-.
T Consensus       251 ~~~~~i~~~~~g~l~vs-~~~~~v~v~~~  278 (286)
T 1q7f_A          251 AQCFDVALMDDGSVVLA-SKDYRLYIYRY  278 (286)
T ss_dssp             SCEEEEEEETTTEEEEE-ETTTEEEEEEC
T ss_pred             CcceeEEECCCCcEEEE-CCCCeEEEEEc
Confidence            23668899999887766 45777777754

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.44  E-value=6.2e-12  Score=113.70  Aligned_cols=214  Identities=9%  Similarity=-0.066  Sum_probs=133.6

Q ss_pred             eeeecccceeeEEeecCCCC-----ceEEEEcCCCCEEEEEeCC---CcEEEEeCCCCeEEeeccCCC-e-eEEEE----
Q 046394           28 REVDILSSRNQYDIMLPELG-----PYTLDFTSSGRYMAAAGCK---GYPYFYNRDGTELHCSKEHGE-V-LKLQF----   93 (378)
Q Consensus        28 ~~~d~~~~~~~~~l~~~~~~-----v~~~~~sp~g~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~-~-~~l~~----   93 (378)
                      ..+|..++..+..+..+...     +.+++|||||++|+.+...   ..|.+||..+.....+..+.. . ..+.|    
T Consensus        13 ~~~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg   92 (396)
T 3c5m_A           13 TFVDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDE   92 (396)
T ss_dssp             EEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTS
T ss_pred             eeecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCC
Confidence            34577888877777665443     7789999999998877543   368888976666655544433 2 33677    


Q ss_pred             -EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeE-------------------EEEcCCCCEEEEEc------------
Q 046394           94 -LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDV-------------------IRVNPFNGVVSLGH------------  141 (378)
Q Consensus        94 -~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~-------------------~~~s~~~~~l~~~~------------  141 (378)
                       .|+.++.++.|.+||+.+++....+..+......                   +.|+|++..++.+.            
T Consensus        93 ~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~  172 (396)
T 3c5m_A           93 RAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIK  172 (396)
T ss_dssp             SEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEE
T ss_pred             CEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEE
Confidence             7888888889999999988876655544332222                   34566665433321            


Q ss_pred             --C-CCe---eeecCCCEEEEEEec-CCCEEEEEECC------CeEEEEEcCCceeeeee-c---CCceEEEEecCCCcc
Q 046394          142 --S-GGT---MLCHQGPVSALAFHP-NGHLMATSGKD------CKIKIWDLRKYEVLQTL-P---GHAKTLDFSRKDSGD  204 (378)
Q Consensus       142 --~-d~~---~~~h~~~v~~~~~sp-~g~~l~t~~~d------~~i~iwd~~~~~~~~~~-~---~~i~~~~~sp~g~~~  204 (378)
                        . .+.   +..+...+..+.|+| +|..|+.++.+      ..|.+||+..+...... +   ..+..+.|+|||.+.
T Consensus       173 ~d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l  252 (396)
T 3c5m_A          173 VDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAM  252 (396)
T ss_dssp             EETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCE
T ss_pred             EECCCCcEEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEE
Confidence              1 111   445667789999999 88877776643      36888998765433222 2   146778999999864


Q ss_pred             ccCCCC--C--ceEEEeeccC--------CcceeeeEEcC-CCCeEEEecC
Q 046394          205 FSGSHN--Y--NRYMGYSMVK--------GYQIGKVSFRP-YEDVLGIGHS  242 (378)
Q Consensus       205 ~~~~~~--~--~~~~~~~~~~--------~~~v~~~~~sp-~g~~l~~~~~  242 (378)
                      ++....  .  ..+..+....        ..... +.|+| ||++|+++..
T Consensus       253 ~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~-~~~s~~dg~~l~~~~~  302 (396)
T 3c5m_A          253 AYVSYFKGQTDRVIYKANPETLENEEVMVMPPCS-HLMSNFDGSLMVGDGC  302 (396)
T ss_dssp             EEEEEETTTCCEEEEEECTTTCCEEEEEECCSEE-EEEECSSSSEEEEEEC
T ss_pred             EEEecCCCCccceEEEEECCCCCeEEeeeCCCCC-CCccCCCCceEEEecC
Confidence            332110  1  1122221100        01122 78999 9998877543

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.44  E-value=3.5e-11  Score=106.22  Aligned_cols=152  Identities=8%  Similarity=0.053  Sum_probs=107.0

Q ss_pred             EeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEe-CCCcEEEEeCC-CCeEEeeccCC------CeeEEE
Q 046394           21 IKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAG-CKGYPYFYNRD-GTELHCSKEHG------EVLKLQ   92 (378)
Q Consensus        21 ~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~-~dg~i~iwd~~-~~~~~~~~~~~------~~~~l~   92 (378)
                      ...++.|.+||..+++.+..+.. ...+..++++|++ .|+++. .++.|.+||.. +.....+....      .+..++
T Consensus        60 ~~~~~~v~viD~~t~~~~~~i~~-~~~p~~i~~~~~g-~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~  137 (328)
T 3dsm_A           60 VNNSHVIFAIDINTFKEVGRITG-FTSPRYIHFLSDE-KAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMV  137 (328)
T ss_dssp             EGGGTEEEEEETTTCCEEEEEEC-CSSEEEEEEEETT-EEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEE
T ss_pred             EcCCCEEEEEECcccEEEEEcCC-CCCCcEEEEeCCC-eEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEE
Confidence            34468999999999999888864 3678999999998 455555 78999999954 44455555444      456677


Q ss_pred             E----EEEEEe-CCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCeeeecCCCEEEEEEecCCCEEEE
Q 046394           93 F----LLASIN-KLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGTMLCHQGPVSALAFHPNGHLMAT  167 (378)
Q Consensus        93 ~----~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~~~~h~~~v~~~~~sp~g~~l~t  167 (378)
                      +    ++++.. .++.|.++|+.+++.+..+....                             ....++++|+|+++++
T Consensus       138 ~~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~-----------------------------~p~~i~~~~dG~l~v~  188 (328)
T 3dsm_A          138 QYGKYVYVNCWSYQNRILKIDTETDKVVDELTIGI-----------------------------QPTSLVMDKYNKMWTI  188 (328)
T ss_dssp             EETTEEEEEECTTCCEEEEEETTTTEEEEEEECSS-----------------------------CBCCCEECTTSEEEEE
T ss_pred             EECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCC-----------------------------CccceEEcCCCCEEEE
Confidence            7    444443 48899999999998887775321                             1234566677665555


Q ss_pred             EECC----------CeEEEEEcCCceeeeee--c--CCceEEEEecCCCc
Q 046394          168 SGKD----------CKIKIWDLRKYEVLQTL--P--GHAKTLDFSRKDSG  203 (378)
Q Consensus       168 ~~~d----------~~i~iwd~~~~~~~~~~--~--~~i~~~~~sp~g~~  203 (378)
                      +..+          +.|.+||..+++....+  +  ..+..++|+|++.+
T Consensus       189 ~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~  238 (328)
T 3dsm_A          189 TDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDT  238 (328)
T ss_dssp             BCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCE
T ss_pred             ECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCE
Confidence            5443          67888888877776665  2  35778888887765

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.41  E-value=1.4e-10  Score=103.68  Aligned_cols=208  Identities=11%  Similarity=0.012  Sum_probs=117.0

Q ss_pred             cceeeeeecccceeeEEeecC------CCCceEEEEcCCCCEEEEEeC--CCcEEEEeC-CCCeEEe-eccCCCeeEEEE
Q 046394           24 EAIAREVDILSSRNQYDIMLP------ELGPYTLDFTSSGRYMAAAGC--KGYPYFYNR-DGTELHC-SKEHGEVLKLQF   93 (378)
Q Consensus        24 ~~~i~~~d~~~~~~~~~l~~~------~~~v~~~~~sp~g~~l~~~~~--dg~i~iwd~-~~~~~~~-~~~~~~~~~l~~   93 (378)
                      ++.|.+||+.+++.+..+..+      ...+..++|+|||++|++++.  ++.|.+||. ++..+.. +.. .+...+.+
T Consensus        80 ~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~-~~~~~v~~  158 (361)
T 2oiz_A           80 SDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAA-AGCWSVIP  158 (361)
T ss_dssp             EEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGG-TTEEEEEE
T ss_pred             CCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecC-CCcceeEE
Confidence            567999999999888887753      346789999999999998874  578999995 4555555 432 22211222


Q ss_pred             ------EEEEEeCCCeEEEEEcCC-CcEEEEEe------cCCCCeeEEEEcCCCCEEEEEcCCCe---eee---------
Q 046394           94 ------LLASINKLGQLRYQNVTM-GEIVGNFW------TGLGRTDVIRVNPFNGVVSLGHSGGT---MLC---------  148 (378)
Q Consensus        94 ------~l~s~~~d~~i~iwd~~~-~~~~~~~~------~~~~~v~~~~~s~~~~~l~~~~~d~~---~~~---------  148 (378)
                            .+++.+.||.+.+|++.. ++......      ....+ ..+.++|++..++..+.++.   +..         
T Consensus       159 ~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~  237 (361)
T 2oiz_A          159 QPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDP-IFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDG  237 (361)
T ss_dssp             CTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSC-BCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEE
T ss_pred             cCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCc-eEEEecccCCEEEEEeCCCeEEEEEecCCCceecc
Confidence                  566777788888888754 44431111      11111 11122333333332222222   000         


Q ss_pred             ----------cC----CCEEEEEEecCCCEEEEEEC-----------CCeEEEEEcCCceee--eeecCCceEEEEecCC
Q 046394          149 ----------HQ----GPVSALAFHPNGHLMATSGK-----------DCKIKIWDLRKYEVL--QTLPGHAKTLDFSRKD  201 (378)
Q Consensus       149 ----------h~----~~v~~~~~sp~g~~l~t~~~-----------d~~i~iwd~~~~~~~--~~~~~~i~~~~~sp~g  201 (378)
                                +.    .....++|+|+++.++++..           .+.|.+||+.+++.+  ...+. +.+++|+|||
T Consensus       238 ~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~-p~~ia~spdg  316 (361)
T 2oiz_A          238 PWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD-ALSMTIDQQR  316 (361)
T ss_dssp             EEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT-CCEEEEETTT
T ss_pred             cccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC-eeEEEECCCC
Confidence                      00    00112567777666554432           236777777776652  33344 7777777776


Q ss_pred             Cc---------cccCCCCC--ceEEEeeccCCcceeeeEEcCCCC
Q 046394          202 SG---------DFSGSHNY--NRYMGYSMVKGYQIGKVSFRPYED  235 (378)
Q Consensus       202 ~~---------~~~~~~~~--~~~~~~~~~~~~~v~~~~~sp~g~  235 (378)
                      ++         .+|+..+.  +.+..+.. .+.....+.++|+|.
T Consensus       317 ~~l~v~n~~~v~v~D~~t~~l~~~~~i~~-~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          317 NLMLTLDGGNVNVYDISQPEPKLLRTIEG-AAEASLQVQFHPVGG  360 (361)
T ss_dssp             TEEEEECSSCEEEEECSSSSCEEEEEETT-SCSSEEEEEECCCSC
T ss_pred             CEEEEeCCCeEEEEECCCCcceeeEEecc-CCCCcEEEEecCCCC
Confidence            63         34455555  55544433 455566777777764

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.39  E-value=2.2e-11  Score=118.10  Aligned_cols=180  Identities=9%  Similarity=-0.015  Sum_probs=125.1

Q ss_pred             cceeeeeecccceeeEEeecCCCCce---------EEEEc--CCCCE-EEEEeC-CCcEEEEeCC--C-CeEEeecc---
Q 046394           24 EAIAREVDILSSRNQYDIMLPELGPY---------TLDFT--SSGRY-MAAAGC-KGYPYFYNRD--G-TELHCSKE---   84 (378)
Q Consensus        24 ~~~i~~~d~~~~~~~~~l~~~~~~v~---------~~~~s--p~g~~-l~~~~~-dg~i~iwd~~--~-~~~~~~~~---   84 (378)
                      ++...+|....+.....+..|...+.         +..|+  |||+. |+.++. +..|++|+..  + .....+..   
T Consensus        46 ~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~  125 (662)
T 3azo_A           46 AGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSA  125 (662)
T ss_dssp             TTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCC
T ss_pred             CCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCcc
Confidence            56677888655555667777766665         66665  99998 776654 6678888876  4 55556655   


Q ss_pred             --CCCe-eEEEE-----EEEEEeCC----------CeEEEEEcCC------CcEEEEEe-cCCCCeeEEEEcCCCCEEEE
Q 046394           85 --HGEV-LKLQF-----LLASINKL----------GQLRYQNVTM------GEIVGNFW-TGLGRTDVIRVNPFNGVVSL  139 (378)
Q Consensus        85 --~~~~-~~l~~-----~l~s~~~d----------~~i~iwd~~~------~~~~~~~~-~~~~~v~~~~~s~~~~~l~~  139 (378)
                        |... .+++|     .|++++.+          ..|.+||+.+      +.. ..+. .+...+..++|||||+.|+.
T Consensus       126 ~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~  204 (662)
T 3azo_A          126 VGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVW  204 (662)
T ss_dssp             STTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGS-EESSCSCSSEECCCEECTTSSEEEE
T ss_pred             CCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCce-eEEEecCCCcccCceECCCCCEEEE
Confidence              4443 78888     67776665          5899999987      554 3444 45567888999999998887


Q ss_pred             EcCC-------------------C---e----eeecCCCEEEEEEecCCCEEEEEECCC--eEEEEEcCCceeeeee--c
Q 046394          140 GHSG-------------------G---T----MLCHQGPVSALAFHPNGHLMATSGKDC--KIKIWDLRKYEVLQTL--P  189 (378)
Q Consensus       140 ~~~d-------------------~---~----~~~h~~~v~~~~~sp~g~~l~t~~~d~--~i~iwd~~~~~~~~~~--~  189 (378)
                      ++.+                   +   .    ..+|...+..++|+|||+++++++.++  .|.+||+.+++.....  +
T Consensus       205 ~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~  284 (662)
T 3azo_A          205 LAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRRE  284 (662)
T ss_dssp             EEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCS
T ss_pred             EECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeeccccc
Confidence            6633                   2   1    223467889999999999888888888  6777777666654333  1


Q ss_pred             CC---------ceEEEEecCCCcc
Q 046394          190 GH---------AKTLDFSRKDSGD  204 (378)
Q Consensus       190 ~~---------i~~~~~sp~g~~~  204 (378)
                      ..         +.+++|+|++.+.
T Consensus       285 ~~~~~p~w~~~~~~~~~~~~~~~~  308 (662)
T 3azo_A          285 EEFAGPLWTPGMRWFAPLANGLIA  308 (662)
T ss_dssp             SBSSCCCCSTTCCSEEECTTSCEE
T ss_pred             ccccCccccccCceEeEeCCCEEE
Confidence            11         4678888887753

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.38  E-value=1.9e-11  Score=118.47  Aligned_cols=177  Identities=10%  Similarity=-0.032  Sum_probs=119.8

Q ss_pred             cceeeeeecc--cceeeEEeec-----CCCCceEEEEcCCCCEEEEEeCC----------CcEEEEeCCC------CeEE
Q 046394           24 EAIAREVDIL--SSRNQYDIML-----PELGPYTLDFTSSGRYMAAAGCK----------GYPYFYNRDG------TELH   80 (378)
Q Consensus        24 ~~~i~~~d~~--~~~~~~~l~~-----~~~~v~~~~~sp~g~~l~~~~~d----------g~i~iwd~~~------~~~~   80 (378)
                      +..|.++++.  .......+..     |...+.+++|||||+.|++++.+          ..|++||..+      ....
T Consensus       101 ~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  180 (662)
T 3azo_A          101 DQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVR  180 (662)
T ss_dssp             TCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSE
T ss_pred             CCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCcee
Confidence            3445555554  2034455555     55678899999999999988876          5899999776      5555


Q ss_pred             eec-cCCCe-eEEEE-----EEEEEeCC--------CeEEEEEcC-CC---cEEEEEecCCCCeeEEEEcCCCCEEEEEc
Q 046394           81 CSK-EHGEV-LKLQF-----LLASINKL--------GQLRYQNVT-MG---EIVGNFWTGLGRTDVIRVNPFNGVVSLGH  141 (378)
Q Consensus        81 ~~~-~~~~~-~~l~~-----~l~s~~~d--------~~i~iwd~~-~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  141 (378)
                      .+. .+... ..+.|     .|+.++.+        ..|.+||+. ++   +.......+...+..++|+|||++++++.
T Consensus       181 ~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~  260 (662)
T 3azo_A          181 ELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATD  260 (662)
T ss_dssp             ESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEEC
T ss_pred             EEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEEC
Confidence            665 54444 77888     66665544        479999998 57   44444444567899999999999888887


Q ss_pred             CCCe---------------eee-cCCC--------EEEEEEecCCCEEEEEECCCeEEEE--EcCCceeeeee--c-CCc
Q 046394          142 SGGT---------------MLC-HQGP--------VSALAFHPNGHLMATSGKDCKIKIW--DLRKYEVLQTL--P-GHA  192 (378)
Q Consensus       142 ~d~~---------------~~~-h~~~--------v~~~~~sp~g~~l~t~~~d~~i~iw--d~~~~~~~~~~--~-~~i  192 (378)
                      .++.               +.. +...        +.+++|+|++.++++++. +.++||  |+.++. +..+  + ..+
T Consensus       261 ~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~~~~~  338 (662)
T 3azo_A          261 RTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LVDAAGPWTEW  338 (662)
T ss_dssp             TTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEECCSSCCEE
T ss_pred             CCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEEecCCCCeE
Confidence            7763               111 1111        457889999999999998 999999  655555 4555  2 334


Q ss_pred             eEEEEecCCCc
Q 046394          193 KTLDFSRKDSG  203 (378)
Q Consensus       193 ~~~~~sp~g~~  203 (378)
                      ..+ |++++..
T Consensus       339 ~~~-~s~~~~~  348 (662)
T 3azo_A          339 AAT-LTVSGTR  348 (662)
T ss_dssp             EEE-EEEETTE
T ss_pred             EEE-EecCCCE
Confidence            433 2555543

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.37  E-value=2.1e-10  Score=98.01  Aligned_cols=163  Identities=9%  Similarity=-0.051  Sum_probs=92.9

Q ss_pred             eeEE-E-eccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEeeccC--CCeeEEE
Q 046394           17 KTWR-I-KQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTELHCSKEH--GEVLKLQ   92 (378)
Q Consensus        17 ~~~~-~-~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~~l~   92 (378)
                      +.|. . ..++.|.+||..+.........+...+.+++++++|+++++.. ++.|.+||..+.....+...  ..+.+++
T Consensus        36 ~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~~~~~~~~p~~i~  114 (270)
T 1rwi_B           36 NVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVLPFDGLNYPEGLA  114 (270)
T ss_dssp             CEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEECCCCSCSSEEEEE
T ss_pred             CEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEeeeecCCcCCCcceE
Confidence            4444 3 4467788888766543322223335788999999998555554 88999999877665554322  3457888


Q ss_pred             E-----EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe--------------eeecCCCE
Q 046394           93 F-----LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT--------------MLCHQGPV  153 (378)
Q Consensus        93 ~-----~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~--------------~~~h~~~v  153 (378)
                      +     ++++...++.|.+|+..+.............+.+++++++|.++++...++.              ...+...+
T Consensus       115 ~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p  194 (270)
T 1rwi_B          115 VDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAP  194 (270)
T ss_dssp             ECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSE
T ss_pred             ECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCc
Confidence            8     6666667788999976554433222122234556666666664444433332              01111345


Q ss_pred             EEEEEecCCCEEEEEECCCeEEEEEcC
Q 046394          154 SALAFHPNGHLMATSGKDCKIKIWDLR  180 (378)
Q Consensus       154 ~~~~~sp~g~~l~t~~~d~~i~iwd~~  180 (378)
                      .+++++|+|+++++...++.|.+||..
T Consensus       195 ~~i~~d~~g~l~v~~~~~~~v~~~~~~  221 (270)
T 1rwi_B          195 WGIAVDEAGTVYVTEHNTNQVVKLLAG  221 (270)
T ss_dssp             EEEEECTTCCEEEEETTTSCEEEECTT
T ss_pred             eEEEECCCCCEEEEECCCCcEEEEcCC
Confidence            566666666555555555566666553

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.36  E-value=3.6e-09  Score=91.52  Aligned_cols=228  Identities=10%  Similarity=0.017  Sum_probs=146.1

Q ss_pred             CCceeeEEEec-cceeeeeecccceee-EEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEeec--cC-CC
Q 046394           13 EGVEKTWRIKQ-EAIAREVDILSSRNQ-YDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTELHCSK--EH-GE   87 (378)
Q Consensus        13 ~~~~~~~~~~~-~~~i~~~d~~~~~~~-~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~~--~~-~~   87 (378)
                      +.....+.... ++.|..||.. +... +.+..+...+.+++++++|.++++...++.|..||..+.. ..+.  .. ..
T Consensus        23 d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~-~~~~~~~~~~~  100 (299)
T 2z2n_A           23 SDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKKGII-KEYTLPNPDSA  100 (299)
T ss_dssp             CTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTSCE-EEEECSSTTCC
T ss_pred             CCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCCCcE-EEEeCCCcCCC
Confidence            33344554444 5788899887 4332 2223345678999999999977777668889999976543 3332  12 23


Q ss_pred             eeEEEE-----EEEEEeCCCeEEEEEcCCCcEEEE-EecCCCCeeEEEEcCCCCEEEEEcCCCe---------e-----e
Q 046394           88 VLKLQF-----LLASINKLGQLRYQNVTMGEIVGN-FWTGLGRTDVIRVNPFNGVVSLGHSGGT---------M-----L  147 (378)
Q Consensus        88 ~~~l~~-----~l~s~~~d~~i~iwd~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~d~~---------~-----~  147 (378)
                      +.++++     ++++...++.|.+||. ++..... .......+..+++++++.++++...++.         +     .
T Consensus       101 ~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~  179 (299)
T 2z2n_A          101 PYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITESGDITEFKIP  179 (299)
T ss_dssp             EEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEECS
T ss_pred             ceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcCCCcEEEeeCC
Confidence            477877     6666666889999998 6654432 2224467899999999988777655443         1     1


Q ss_pred             ecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeee-e---cCCceEEEEecCCCccccCCCCC--------ceEE
Q 046394          148 CHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQT-L---PGHAKTLDFSRKDSGDFSGSHNY--------NRYM  215 (378)
Q Consensus       148 ~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~-~---~~~i~~~~~sp~g~~~~~~~~~~--------~~~~  215 (378)
                      .+...+.+++++++|+++++...++.|.+||. ++..... +   ...+.+++++++|...+.+....        ..+.
T Consensus       180 ~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~g~~~  258 (299)
T 2z2n_A          180 TPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTSNNIIE  258 (299)
T ss_dssp             STTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEETTTEEE
T ss_pred             CCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECCCCceE
Confidence            12345789999999998777777889999999 6664332 2   25688999999987533321111        1122


Q ss_pred             Eeec-cCCcceeeeEEcCCCCeEEEecCCCe
Q 046394          216 GYSM-VKGYQIGKVSFRPYEDVLGIGHSMGV  245 (378)
Q Consensus       216 ~~~~-~~~~~v~~~~~sp~g~~l~~~~~~g~  245 (378)
                      .+.. .+...+.++.+ ++|.++++...+++
T Consensus       259 ~~~~~~~~~~~~~i~~-~~g~l~v~~~~~~l  288 (299)
T 2z2n_A          259 EYPIQIKSAEPHGICF-DGETIWFAMECDKI  288 (299)
T ss_dssp             EEECSSSSCCEEEEEE-CSSCEEEEETTTEE
T ss_pred             EEeCCCCCCccceEEe-cCCCEEEEecCCcE
Confidence            2211 12345777778 77766655554443

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.31  E-value=1.1e-10  Score=103.17  Aligned_cols=202  Identities=10%  Similarity=-0.003  Sum_probs=134.0

Q ss_pred             CCceEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEeeccCCC-eeEEEE-----EEEEEeCCCeEEEEEcCCCcEEEEEe
Q 046394           46 LGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTELHCSKEHGE-VLKLQF-----LLASINKLGQLRYQNVTMGEIVGNFW  119 (378)
Q Consensus        46 ~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~l~~-----~l~s~~~d~~i~iwd~~~~~~~~~~~  119 (378)
                      ..|.++.|+|++..++..+.++.+..|  .+.....+..+.. +.+++|     +++++..++.|.+||..+++......
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~   83 (333)
T 2dg1_A            6 QDLPTLFYSGKSNSAVPIISESELQTI--TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFV   83 (333)
T ss_dssp             CCCCBCCSCGGGGCSSCCCCGGGSCEE--ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEE
T ss_pred             cccceeeecCCccceeEEeecccCccc--ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEee
Confidence            457788999988877777778889999  4555666665544 488888     66778888999999998888765554


Q ss_pred             cCCCCeeEEEEcCCCCEEEEEcCC----Ce----------ee------ecCCCEEEEEEecCCCEEEEEEC------CCe
Q 046394          120 TGLGRTDVIRVNPFNGVVSLGHSG----GT----------ML------CHQGPVSALAFHPNGHLMATSGK------DCK  173 (378)
Q Consensus       120 ~~~~~v~~~~~s~~~~~l~~~~~d----~~----------~~------~h~~~v~~~~~sp~g~~l~t~~~------d~~  173 (378)
                      .+...+.+++++|+|.++++...+    +.          +.      .+...+.+++++|+|+++++...      .+.
T Consensus        84 ~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~  163 (333)
T 2dg1_A           84 SHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGG  163 (333)
T ss_dssp             CSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEE
T ss_pred             CCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCce
Confidence            556789999999999988877655    22          11      13356889999999988877654      356


Q ss_pred             EEEEEcCCceeeeee--cCCceEEEEecCCCccc-c----------CCC-CCceEEE------eeccCCcceeeeEEcCC
Q 046394          174 IKIWDLRKYEVLQTL--PGHAKTLDFSRKDSGDF-S----------GSH-NYNRYMG------YSMVKGYQIGKVSFRPY  233 (378)
Q Consensus       174 i~iwd~~~~~~~~~~--~~~i~~~~~sp~g~~~~-~----------~~~-~~~~~~~------~~~~~~~~v~~~~~sp~  233 (378)
                      |..||..+++.....  ...+..++|+|+|.+.. .          +.. ....+..      ........+..++++++
T Consensus       164 l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~  243 (333)
T 2dg1_A          164 VYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSD  243 (333)
T ss_dssp             EEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTT
T ss_pred             EEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCC
Confidence            777776655443322  35678899999997422 1          111 1111100      00000124667888888


Q ss_pred             CCeEEEecCCCeEEEE
Q 046394          234 EDVLGIGHSMGVSGIL  249 (378)
Q Consensus       234 g~~l~~~~~~g~~~~~  249 (378)
                      |.++++...++.+.+|
T Consensus       244 G~l~v~~~~~~~v~~~  259 (333)
T 2dg1_A          244 DNLYVAMYGQGRVLVF  259 (333)
T ss_dssp             CCEEEEEETTTEEEEE
T ss_pred             CCEEEEEcCCCEEEEE
Confidence            8766666555544444

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.30  E-value=3.2e-10  Score=97.37  Aligned_cols=182  Identities=7%  Similarity=-0.042  Sum_probs=133.2

Q ss_pred             CCCEEEEEeCCCcEEEEeC-CCCeEEeeccCC--CeeEEEE-----EEEEEeCCCeEEEEEcCCCcEEEEEecCC-CCee
Q 046394           56 SGRYMAAAGCKGYPYFYNR-DGTELHCSKEHG--EVLKLQF-----LLASINKLGQLRYQNVTMGEIVGNFWTGL-GRTD  126 (378)
Q Consensus        56 ~g~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~--~~~~l~~-----~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~v~  126 (378)
                      .++.|++++.++.|.+||. +|+.+..+..+.  .+.++.+     +++  +.++.|..||. +++.+..+..+. ..+.
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~   80 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQ   80 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEE
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCcccc
Confidence            3578999999999999996 999999988775  3477777     555  45788999999 899999988753 4688


Q ss_pred             EEEEcCCCCEEEEEcC-CCe-------------ee------ecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeee
Q 046394          127 VIRVNPFNGVVSLGHS-GGT-------------ML------CHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQ  186 (378)
Q Consensus       127 ~~~~s~~~~~l~~~~~-d~~-------------~~------~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~  186 (378)
                      ++.+.|+|+++++.+. ++.             +.      .+......+++.++|+++++.+.++.|.+||.. |+.+.
T Consensus        81 ~~~~~~dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w  159 (276)
T 3no2_A           81 TARILPDGNALVAWCGHPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLN  159 (276)
T ss_dssp             EEEECTTSCEEEEEESTTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEE
T ss_pred             ccEECCCCCEEEEecCCCCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEE
Confidence            8999999999988776 443             10      111233445678899999999999999999998 99998


Q ss_pred             ee--cCCceEEEEecCCCcccc----------CCCCCceEEEeecc-----CCcceeeeEEcCCCCeEEEec
Q 046394          187 TL--PGHAKTLDFSRKDSGDFS----------GSHNYNRYMGYSMV-----KGYQIGKVSFRPYEDVLGIGH  241 (378)
Q Consensus       187 ~~--~~~i~~~~~sp~g~~~~~----------~~~~~~~~~~~~~~-----~~~~v~~~~~sp~g~~l~~~~  241 (378)
                      ++  +..+.++.+.++|.+.+.          +..+++.+-.+...     ....+..+...++|.++++..
T Consensus       160 ~~~~~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~  231 (276)
T 3no2_A          160 SVKLSGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW  231 (276)
T ss_dssp             EEECSSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred             EEECCCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEec
Confidence            88  456777888888876443          33334444444320     012266777888888877763

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.29  E-value=1.1e-08  Score=88.45  Aligned_cols=207  Identities=12%  Similarity=0.072  Sum_probs=138.3

Q ss_pred             EeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEeec--cC-CCeeEEEE-----EEEEEeCCCeEEEEEcCC
Q 046394           40 DIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTELHCSK--EH-GEVLKLQF-----LLASINKLGQLRYQNVTM  111 (378)
Q Consensus        40 ~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~~--~~-~~~~~l~~-----~l~s~~~d~~i~iwd~~~  111 (378)
                      .+..+...+.+++++++|+.+++...++.|.+||..+. +..+.  .+ ..+.++++     ++++...++.|..||.. 
T Consensus         9 ~~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~~~-~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-   86 (299)
T 2z2n_A            9 NLTNQDTGPYGITVSDKGKVWITQHKANMISCINLDGK-ITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-   86 (299)
T ss_dssp             ECCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-
T ss_pred             cCCCcCCCccceEECCCCCEEEEecCCCcEEEEcCCCC-eEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-
Confidence            34445568999999999997776666789999997744 33332  22 23477888     66666667889999986 


Q ss_pred             CcEEEEEe--cCCCCeeEEEEcCCCCEEEEEcCCCe--------------eeecCCCEEEEEEecCCCEEEEEECCCeEE
Q 046394          112 GEIVGNFW--TGLGRTDVIRVNPFNGVVSLGHSGGT--------------MLCHQGPVSALAFHPNGHLMATSGKDCKIK  175 (378)
Q Consensus       112 ~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~d~~--------------~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~  175 (378)
                      ++. ..+.  .....+..+++++++.++++...++.              ...+...+.+++++|+|+++++...++.|.
T Consensus        87 g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~  165 (299)
T 2z2n_A           87 GII-KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITDDGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIG  165 (299)
T ss_dssp             SCE-EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEE
T ss_pred             CcE-EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECCCCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEE
Confidence            443 2332  24467889999999988877655443              111335688999999998888777788999


Q ss_pred             EEEcCCceeeee-e---cCCceEEEEecCCCccccCCC---------CCceEEEeec-cCCcceeeeEEcCCCCeEEEec
Q 046394          176 IWDLRKYEVLQT-L---PGHAKTLDFSRKDSGDFSGSH---------NYNRYMGYSM-VKGYQIGKVSFRPYEDVLGIGH  241 (378)
Q Consensus       176 iwd~~~~~~~~~-~---~~~i~~~~~sp~g~~~~~~~~---------~~~~~~~~~~-~~~~~v~~~~~sp~g~~l~~~~  241 (378)
                      +||. +++.... +   ...+..++++++|...+.+..         +... ..+.. .+...+.++.++++|.++++..
T Consensus       166 ~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~  243 (299)
T 2z2n_A          166 RITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITTSGEI-TEFKIPTPNARPHAITAGAGIDLWFTEW  243 (299)
T ss_dssp             EECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTTCCE-EEEECSSTTCCEEEEEECSTTCEEEEET
T ss_pred             EEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECCCCcE-EEEECCCCCCCceeEEECCCCCEEEecc
Confidence            9999 6665443 2   245788999998875322211         2221 11211 1335688899999998777765


Q ss_pred             CCCeEEEEEc
Q 046394          242 SMGVSGILIP  251 (378)
Q Consensus       242 ~~g~~~~~~~  251 (378)
                      .++.+..+.+
T Consensus       244 ~~~~i~~~d~  253 (299)
T 2z2n_A          244 GANKIGRLTS  253 (299)
T ss_dssp             TTTEEEEEET
T ss_pred             CCceEEEECC
Confidence            6665565654

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.25  E-value=3.8e-10  Score=110.05  Aligned_cols=195  Identities=7%  Similarity=-0.121  Sum_probs=119.6

Q ss_pred             CCCCceEEEEcCCCCEEEEE-----eCCCcEEEEeCCCCeEEeeccCCCe--eEEEE-----EEEEEeCCCe--------
Q 046394           44 PELGPYTLDFTSSGRYMAAA-----GCKGYPYFYNRDGTELHCSKEHGEV--LKLQF-----LLASINKLGQ--------  103 (378)
Q Consensus        44 ~~~~v~~~~~sp~g~~l~~~-----~~dg~i~iwd~~~~~~~~~~~~~~~--~~l~~-----~l~s~~~d~~--------  103 (378)
                      |...+.+++|||||++||.+     +.+..|++||+.+............  ..++|     .|+.++.|..        
T Consensus       119 ~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~  198 (695)
T 2bkl_A          119 GTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDER  198 (695)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGG
T ss_pred             CCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCccccC
Confidence            44468899999999998844     3346899999655443201111122  57788     6777777665        


Q ss_pred             -----EEEEEcCCCc----EEEEEecCCCCeeEEEEcCCCCEEEEEcCCC--e---------------eeecCCCEEEEE
Q 046394          104 -----LRYQNVTMGE----IVGNFWTGLGRTDVIRVNPFNGVVSLGHSGG--T---------------MLCHQGPVSALA  157 (378)
Q Consensus       104 -----i~iwd~~~~~----~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~--~---------------~~~h~~~v~~~~  157 (378)
                           |++|++.+++    .+.....+...+..+.|||||++|+.++.++  .               +..+...+....
T Consensus       199 ~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~  278 (695)
T 2bkl_A          199 PGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKYEVH  278 (695)
T ss_dssp             GGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCEEEE
T ss_pred             CCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceEEEE
Confidence                 9999998876    3333333446788999999999887766554  1               344555556666


Q ss_pred             EecCCCEEEEEE---CCCeEEEEEcCCcee--eeee--c---CCceEEEEecCCCc----------cccCCC-CCceEEE
Q 046394          158 FHPNGHLMATSG---KDCKIKIWDLRKYEV--LQTL--P---GHAKTLDFSRKDSG----------DFSGSH-NYNRYMG  216 (378)
Q Consensus       158 ~sp~g~~l~t~~---~d~~i~iwd~~~~~~--~~~~--~---~~i~~~~~sp~g~~----------~~~~~~-~~~~~~~  216 (378)
                      + |+|.+++++.   .++.|.+||+.++..  ...+  +   ..+..++|+ ++.+          .+|... .+.....
T Consensus       279 ~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~  356 (695)
T 2bkl_A          279 A-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRT  356 (695)
T ss_dssp             E-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEE
T ss_pred             e-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEE
Confidence            6 5666444443   257899999987653  2333  2   236667777 3332          222111 1222333


Q ss_pred             eeccCCcceeeeEEcCCCCeEEEe
Q 046394          217 YSMVKGYQIGKVSFRPYEDVLGIG  240 (378)
Q Consensus       217 ~~~~~~~~v~~~~~sp~g~~l~~~  240 (378)
                      +..+....|..+.++|++..|+..
T Consensus       357 l~~~~~~~v~~~~~s~d~~~l~~~  380 (695)
T 2bkl_A          357 VQLPGVGAASNLMGLEDLDDAYYV  380 (695)
T ss_dssp             CCCSSSSEECCCBSCTTCSEEEEE
T ss_pred             ecCCCCeEEEEeecCCCCCEEEEE
Confidence            333124567888999999776633

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.24  E-value=7.4e-09  Score=90.31  Aligned_cols=207  Identities=12%  Similarity=0.026  Sum_probs=129.5

Q ss_pred             ecCCCCceEEEEcCCCCEEEE-------EeCCCcEEEEeCCCCeEEeecc-----C-CCeeEEEE-----EEEEEeCCCe
Q 046394           42 MLPELGPYTLDFTSSGRYMAA-------AGCKGYPYFYNRDGTELHCSKE-----H-GEVLKLQF-----LLASINKLGQ  103 (378)
Q Consensus        42 ~~~~~~v~~~~~sp~g~~l~~-------~~~dg~i~iwd~~~~~~~~~~~-----~-~~~~~l~~-----~l~s~~~d~~  103 (378)
                      ...-..+.+++|+++|.++++       +..++.|.+||........+..     + ..+.++.+     .+..++..+.
T Consensus        14 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~~   93 (314)
T 1pjx_A           14 TEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLG   93 (314)
T ss_dssp             ECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTE
T ss_pred             hccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECCCC
Confidence            333356789999999987777       5678899999954333333322     2 23467777     3444444557


Q ss_pred             EEEEEcCCCcEEEE-EecC----CCCeeEEEEcCCCCEEEEEcCC---------------Ce------------eeecCC
Q 046394          104 LRYQNVTMGEIVGN-FWTG----LGRTDVIRVNPFNGVVSLGHSG---------------GT------------MLCHQG  151 (378)
Q Consensus       104 i~iwd~~~~~~~~~-~~~~----~~~v~~~~~s~~~~~l~~~~~d---------------~~------------~~~h~~  151 (378)
                      |.+||.. ++.... ....    ...+.+++++++|.++++...+               +.            +..+..
T Consensus        94 l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~  172 (314)
T 1pjx_A           94 LLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQVDTAFQ  172 (314)
T ss_dssp             EEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCEEEEEEEES
T ss_pred             EEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCCCCEEEeccCCC
Confidence            9999988 765433 2211    2357899999999988777654               22            112223


Q ss_pred             CEEEEEEe----cCCCEEEE-EECCCeEEEEEcC-Ccee-----eeeec----CCceEEEEecCCCccc----------c
Q 046394          152 PVSALAFH----PNGHLMAT-SGKDCKIKIWDLR-KYEV-----LQTLP----GHAKTLDFSRKDSGDF----------S  206 (378)
Q Consensus       152 ~v~~~~~s----p~g~~l~t-~~~d~~i~iwd~~-~~~~-----~~~~~----~~i~~~~~sp~g~~~~----------~  206 (378)
                      ....++|+    |+|+.++. ...++.|.+||+. ++..     ...+.    ..+..++++++|.+.+          +
T Consensus       173 ~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~  252 (314)
T 1pjx_A          173 FPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVF  252 (314)
T ss_dssp             SEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEE
T ss_pred             CcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEE
Confidence            46788999    99976544 4567899999986 4442     22222    4578899999987522          3


Q ss_pred             CCCCCceEEEeeccCCcceeeeEEcCCCCeEE-EecCCCeEEEEE
Q 046394          207 GSHNYNRYMGYSMVKGYQIGKVSFRPYEDVLG-IGHSMGVSGILI  250 (378)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~-~~~~~g~~~~~~  250 (378)
                      +..+...+..+.. +...+.+++|+|+|..|. ++..++.+..+.
T Consensus       253 d~~~g~~~~~~~~-~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~  296 (314)
T 1pjx_A          253 GPDGGQPKMRIRC-PFEKPSNLHFKPQTKTIFVTEHENNAVWKFE  296 (314)
T ss_dssp             CTTCBSCSEEEEC-SSSCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             cCCCCcEeEEEeC-CCCCceeEEECCCCCEEEEEeCCCCeEEEEe
Confidence            3332333333433 446688999999998444 444444444443

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.24  E-value=9e-10  Score=94.00  Aligned_cols=197  Identities=8%  Similarity=-0.007  Sum_probs=124.5

Q ss_pred             CceEEEEcCCCCEEE-EEeCCCcEEEEeCCCCeEEeecc-C-CCeeEEEE-----EEEEEeCCCeEEEEEcCCCcEEEEE
Q 046394           47 GPYTLDFTSSGRYMA-AAGCKGYPYFYNRDGTELHCSKE-H-GEVLKLQF-----LLASINKLGQLRYQNVTMGEIVGNF  118 (378)
Q Consensus        47 ~v~~~~~sp~g~~l~-~~~~dg~i~iwd~~~~~~~~~~~-~-~~~~~l~~-----~l~s~~~d~~i~iwd~~~~~~~~~~  118 (378)
                      .+.+++++|+|++++ +.+.++.|.+||..+.....+.. + ..+.++++     ++++.. ++.|.+||....... .+
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~-~~  102 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQT-VL  102 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCE-EC
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEe-ee
Confidence            788999999998666 44678899999965544433322 2 23477888     555555 889999998665433 33


Q ss_pred             e-cCCCCeeEEEEcCCCCEEEEEcCCCe------------e--eecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCce
Q 046394          119 W-TGLGRTDVIRVNPFNGVVSLGHSGGT------------M--LCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYE  183 (378)
Q Consensus       119 ~-~~~~~v~~~~~s~~~~~l~~~~~d~~------------~--~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~  183 (378)
                      . .....+..++++|+|.++++...++.            .  ......+.+++++|+|+++++...++.|.+||.....
T Consensus       103 ~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~  182 (270)
T 1rwi_B          103 PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNN  182 (270)
T ss_dssp             CCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCC
T ss_pred             ecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCc
Confidence            2 23357889999999987777655544            1  1122356789999999988887778899999988765


Q ss_pred             eeeee--c-CCceEEEEecCCCccccCCCCCceE---------EEeeccCCcceeeeEEcCCCCeEEEecCCCe
Q 046394          184 VLQTL--P-GHAKTLDFSRKDSGDFSGSHNYNRY---------MGYSMVKGYQIGKVSFRPYEDVLGIGHSMGV  245 (378)
Q Consensus       184 ~~~~~--~-~~i~~~~~sp~g~~~~~~~~~~~~~---------~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~  245 (378)
                      .....  . ..+..++++++|...+.+.......         ......+...+.+++++|+|.++++...++.
T Consensus       183 ~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~  256 (270)
T 1rwi_B          183 QVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDR  256 (270)
T ss_dssp             EEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTE
T ss_pred             eEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCE
Confidence            54333  2 5678999999986433322111111         1111102245777888888854444444443

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.24  E-value=3e-09  Score=92.20  Aligned_cols=178  Identities=10%  Similarity=0.001  Sum_probs=121.9

Q ss_pred             EEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeC-CCCeEEeeccCC-----CeeEEE
Q 046394           19 WRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNR-DGTELHCSKEHG-----EVLKLQ   92 (378)
Q Consensus        19 ~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~-----~~~~l~   92 (378)
                      +.-..++.|..||..++  ...+..+...+.+++++|+|+++++...++.|.+||. ++..........     .+.+++
T Consensus        44 ~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~  121 (296)
T 3e5z_A           44 FSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVC  121 (296)
T ss_dssp             EEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEE
T ss_pred             EEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEE
Confidence            33345678999998877  5566667778999999999998777766789999996 665433322211     235677


Q ss_pred             E-----EEEEE----e-------------CCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe---ee
Q 046394           93 F-----LLASI----N-------------KLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT---ML  147 (378)
Q Consensus        93 ~-----~l~s~----~-------------~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~---~~  147 (378)
                      +     ++++.    +             ..+.|..++.. ++. ..+..+...++.++|+|+++.+++.+.++.   +.
T Consensus       122 ~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~  199 (296)
T 3e5z_A          122 LAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL-SAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYC  199 (296)
T ss_dssp             ECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE-EEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEE
T ss_pred             ECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCE-EEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEE
Confidence            7     56652    2             13456666654 443 444556677899999999998866665555   11


Q ss_pred             e---------------cCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee--cCCceEEEEe-cCCCc
Q 046394          148 C---------------HQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL--PGHAKTLDFS-RKDSG  203 (378)
Q Consensus       148 ~---------------h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~--~~~i~~~~~s-p~g~~  203 (378)
                      .               +.+.+.+++++++|+++++.  ++.|.+||.. ++.+..+  +..+++++|+ |++..
T Consensus       200 ~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~~~~~~~~~~f~~~d~~~  270 (296)
T 3e5z_A          200 LNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVLTPQTTSNLCFGGPEGRT  270 (296)
T ss_dssp             ECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEECSSCCCEEEEESTTSCE
T ss_pred             ECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEECCCCceeEEEECCCCCE
Confidence            1               12233578999999877666  8899999986 7777766  4338999994 77764

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.23  E-value=3e-09  Score=103.99  Aligned_cols=193  Identities=10%  Similarity=-0.027  Sum_probs=122.1

Q ss_pred             CCceEEEEcCCCCEEEEEeCCC-----cEEEEeCCCCeEEee-ccCCCeeEEEE-----EEEEEeCCCe-----------
Q 046394           46 LGPYTLDFTSSGRYMAAAGCKG-----YPYFYNRDGTELHCS-KEHGEVLKLQF-----LLASINKLGQ-----------  103 (378)
Q Consensus        46 ~~v~~~~~sp~g~~l~~~~~dg-----~i~iwd~~~~~~~~~-~~~~~~~~l~~-----~l~s~~~d~~-----------  103 (378)
                      ..+.+++|||||++||.++.++     .|++||+.+...... ..+.....++|     .|+.++.++.           
T Consensus       125 ~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~  204 (710)
T 2xdw_A          125 VALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETST  204 (710)
T ss_dssp             EEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCC
T ss_pred             EEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcccceEEEEeCCCEEEEEEECCcccccccccccc
Confidence            3577999999999998776543     899999665544332 22222466888     6666666554           


Q ss_pred             -----EEEEEcCCCcE--EEEEec--CCCCeeEEEEcCCCCEEEEEcCCC-----e-----ee----------------e
Q 046394          104 -----LRYQNVTMGEI--VGNFWT--GLGRTDVIRVNPFNGVVSLGHSGG-----T-----ML----------------C  148 (378)
Q Consensus       104 -----i~iwd~~~~~~--~~~~~~--~~~~v~~~~~s~~~~~l~~~~~d~-----~-----~~----------------~  148 (378)
                           |++|++.+++.  ...+..  +...+..+.|+|||++|+.++..+     .     +.                .
T Consensus       205 ~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~  284 (710)
T 2xdw_A          205 NLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLID  284 (710)
T ss_dssp             CCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEEC
T ss_pred             CCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeC
Confidence                 99999988762  233332  345578899999999888765421     1     11                1


Q ss_pred             cCCCEEEEEEecCCCEEEEEECCC----eEEEEEcCCcee--eeee--c---CCceEEEEecCCCc------------cc
Q 046394          149 HQGPVSALAFHPNGHLMATSGKDC----KIKIWDLRKYEV--LQTL--P---GHAKTLDFSRKDSG------------DF  205 (378)
Q Consensus       149 h~~~v~~~~~sp~g~~l~t~~~d~----~i~iwd~~~~~~--~~~~--~---~~i~~~~~sp~g~~------------~~  205 (378)
                      +...+.. .|+|+|..|+..+.++    .|.+||+.++..  ...+  +   ..+..++|++++.+            .+
T Consensus       285 ~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~  363 (710)
T 2xdw_A          285 NFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQL  363 (710)
T ss_dssp             SSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEE
T ss_pred             CCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEE
Confidence            1222333 4889998887766533    699999987642  3334  2   25778888866543            22


Q ss_pred             cCCCCCceEEEeeccCCcceeeeEEcCCCCeEEEe
Q 046394          206 SGSHNYNRYMGYSMVKGYQIGKVSFRPYEDVLGIG  240 (378)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~  240 (378)
                      ++..++.....+.. +...|..+.++|++..|+..
T Consensus       364 ~~~~~g~~~~~l~~-~~~~v~~~~~s~d~~~l~~~  397 (710)
T 2xdw_A          364 HDLATGALLKIFPL-EVGSVVGYSGQKKDTEIFYQ  397 (710)
T ss_dssp             EETTTCCEEEEECC-CSSEEEEEECCTTCSEEEEE
T ss_pred             EECCCCCEEEecCC-CCceEEEEecCCCCCEEEEE
Confidence            23323344444444 45567888899988766533

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.22  E-value=6e-08  Score=83.71  Aligned_cols=222  Identities=10%  Similarity=0.017  Sum_probs=140.3

Q ss_pred             eeeEEEe-ccceeeeeecccceee-EEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEeecc--C-CCeeE
Q 046394           16 EKTWRIK-QEAIAREVDILSSRNQ-YDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTELHCSKE--H-GEVLK   90 (378)
Q Consensus        16 ~~~~~~~-~~~~i~~~d~~~~~~~-~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~~~--~-~~~~~   90 (378)
                      ...+... .++.|..||.. ++.. +.+..+...+.+++++++|.+.++...++.|.+||..+... .+..  . ..+.+
T Consensus        31 g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~g~~~-~~~~~~~~~~~~~  108 (300)
T 2qc5_A           31 GKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKKGGFT-EYPLPQPDSGPYG  108 (300)
T ss_dssp             SCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTSCEE-EEECSSTTCCEEE
T ss_pred             CCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCCCCeE-EecCCCCCCCCcc
Confidence            3444443 35788888877 4332 22333346789999999998777766678899999775543 3322  2 23477


Q ss_pred             EEE-----EEEEEeCCCeEEEEEcCCCcEEEE-EecCCCCeeEEEEcCCCCEEEEEcCCCe------------e--eecC
Q 046394           91 LQF-----LLASINKLGQLRYQNVTMGEIVGN-FWTGLGRTDVIRVNPFNGVVSLGHSGGT------------M--LCHQ  150 (378)
Q Consensus        91 l~~-----~l~s~~~d~~i~iwd~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~d~~------------~--~~h~  150 (378)
                      +++     ++++...++.|..||.. ++.... +......+..+++++++.++++...++.            +  ..+.
T Consensus       109 i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~  187 (300)
T 2qc5_A          109 ITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITNTGKLEEYPLPTNA  187 (300)
T ss_dssp             EEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTTCCEEEEECSSTT
T ss_pred             ceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECCCCcEEEeeCCCCC
Confidence            777     66666667899999987 665432 2224467899999999996666554443            1  1223


Q ss_pred             CCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeee-e---cCCceEEEEecCCCccccCCCCCc--------eEEEee
Q 046394          151 GPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQT-L---PGHAKTLDFSRKDSGDFSGSHNYN--------RYMGYS  218 (378)
Q Consensus       151 ~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~-~---~~~i~~~~~sp~g~~~~~~~~~~~--------~~~~~~  218 (378)
                      ..+.+++++++|+++++....+.|.+||. ++..... +   ...+.+++++++|...+.+.....        .+..+.
T Consensus       188 ~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g~~~~~~  266 (300)
T 2qc5_A          188 AAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITNDNTIQEYQ  266 (300)
T ss_dssp             CCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTTSCEEEEE
T ss_pred             CCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECCCCcEEEEE
Confidence            46889999999988777777788999998 5554333 2   245788999999875332211111        111121


Q ss_pred             cc-CCcceeeeEEcCCCCeEEEec
Q 046394          219 MV-KGYQIGKVSFRPYEDVLGIGH  241 (378)
Q Consensus       219 ~~-~~~~v~~~~~sp~g~~l~~~~  241 (378)
                      .. ....+.++.++++|.++++..
T Consensus       267 ~~~~~~~~~~i~~~~~g~l~v~~~  290 (300)
T 2qc5_A          267 LQTENAEPHGITFGKDGSVWFALK  290 (300)
T ss_dssp             CCSTTCCCCCEEECTTSCEEEECS
T ss_pred             CCccCCccceeEeCCCCCEEEEcc
Confidence            10 234467777777775444443

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.22  E-value=8.3e-10  Score=98.51  Aligned_cols=137  Identities=12%  Similarity=0.124  Sum_probs=94.7

Q ss_pred             eeecCCceeeEEEeccceeeeeecccce-----------eeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCC-
Q 046394            9 YLEAEGVEKTWRIKQEAIAREVDILSSR-----------NQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDG-   76 (378)
Q Consensus         9 ~l~~~~~~~~~~~~~~~~i~~~d~~~~~-----------~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~-   76 (378)
                      .|+.....+.+.......+.+|++.+..           ...... +.. |+.++|  |+.+|+++ .++.|++||... 
T Consensus        42 lLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~~-lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl  116 (388)
T 1xip_A           42 NLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKE-IPD-VIFVCF--HGDQVLVS-TRNALYSLDLEEL  116 (388)
T ss_dssp             CEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEE-CTT-EEEEEE--ETTEEEEE-ESSEEEEEESSST
T ss_pred             EEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEee-CCC-eeEEEE--CCCEEEEE-cCCcEEEEEchhh
Confidence            3444443333333333455568776554           112333 445 999999  89999999 889999999432 


Q ss_pred             CeEEeeccCCCe-eEEEE---EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCeeeecCCC
Q 046394           77 TELHCSKEHGEV-LKLQF---LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGTMLCHQGP  152 (378)
Q Consensus        77 ~~~~~~~~~~~~-~~l~~---~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~~~~h~~~  152 (378)
                      .....+..|... .++.+   .+++++.||.|.+||+.+++... +                               ...
T Consensus       117 ~~~~~~~~~~~~v~~i~~~~p~~av~~~dG~L~v~dl~~~~~~~-~-------------------------------~~~  164 (388)
T 1xip_A          117 SEFRTVTSFEKPVFQLKNVNNTLVILNSVNDLSALDLRTKSTKQ-L-------------------------------AQN  164 (388)
T ss_dssp             TCEEEEEECSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEE-E-------------------------------EES
T ss_pred             hccCccceeecceeeEEecCCCEEEEECCCCEEEEEccCCcccc-c-------------------------------cCC
Confidence            233334444433 66666   68888999999999998877642 1                               236


Q ss_pred             EEEEEEecCCCEEEEEECCCeEEEEEcCCcee
Q 046394          153 VSALAFHPNGHLMATSGKDCKIKIWDLRKYEV  184 (378)
Q Consensus       153 v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~  184 (378)
                      |+|++|||+|  ++.|..||++++|+...+.+
T Consensus       165 Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~  194 (388)
T 1xip_A          165 VTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEM  194 (388)
T ss_dssp             EEEEEECSSE--EEEEETTSCEEEEEEETTEE
T ss_pred             ceEEEEcCCc--eEEEEcCCcEEEEcCCCccc
Confidence            8899999999  67899999999998877664

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.20  E-value=1.7e-08  Score=87.65  Aligned_cols=192  Identities=7%  Similarity=-0.046  Sum_probs=125.2

Q ss_pred             CCceEEEEcCCCC-EEEEEeCCCcEEEEeCCCCeEEeeccCCCeeEEEE-----EEEEEeCCCeEEEEEcCCCcEEEEEe
Q 046394           46 LGPYTLDFTSSGR-YMAAAGCKGYPYFYNRDGTELHCSKEHGEVLKLQF-----LLASINKLGQLRYQNVTMGEIVGNFW  119 (378)
Q Consensus        46 ~~v~~~~~sp~g~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~l~~-----~l~s~~~d~~i~iwd~~~~~~~~~~~  119 (378)
                      .-.-+..|+|++. ++++...++.|+.||..+.....+.....+.++++     ++++ . ++.|.+||..+++......
T Consensus        13 ~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~~~~~   90 (297)
T 3g4e_A           13 RCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQRVTMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAVVLAT   90 (297)
T ss_dssp             SBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEEEEEE
T ss_pred             ccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEEEeCCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEEEEEe
Confidence            3455889999655 55555568899999976655555544445588888     4444 3 5679999998877543333


Q ss_pred             cC----CCCeeEEEEcCCCCEEEEEcCC-----------Ce------------eeecCCCEEEEEEecCCCEE-EEEECC
Q 046394          120 TG----LGRTDVIRVNPFNGVVSLGHSG-----------GT------------MLCHQGPVSALAFHPNGHLM-ATSGKD  171 (378)
Q Consensus       120 ~~----~~~v~~~~~s~~~~~l~~~~~d-----------~~------------~~~h~~~v~~~~~sp~g~~l-~t~~~d  171 (378)
                      ..    ...++.++++|+|.++++....           +.            +..+......++|+|+++.| ++.+.+
T Consensus        91 ~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~lyv~~~~~  170 (297)
T 3g4e_A           91 VDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIFYYIDSLS  170 (297)
T ss_dssp             CCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTTSCEEEEEEGGG
T ss_pred             cCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCCCCEEEEecCCC
Confidence            21    2347889999999976654321           11            11222345689999999876 455567


Q ss_pred             CeEEEEEc--CCcee-----eeee---cCCceEEEEecCCCc----------cccCCCCCceEEEeeccCCcceeeeEEc
Q 046394          172 CKIKIWDL--RKYEV-----LQTL---PGHAKTLDFSRKDSG----------DFSGSHNYNRYMGYSMVKGYQIGKVSFR  231 (378)
Q Consensus       172 ~~i~iwd~--~~~~~-----~~~~---~~~i~~~~~sp~g~~----------~~~~~~~~~~~~~~~~~~~~~v~~~~~s  231 (378)
                      +.|.+||+  .++..     +..+   ...+..++++++|.+          ..++..++..+..+.. +...+++++|.
T Consensus       171 ~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~-p~~~~t~~~f~  249 (297)
T 3g4e_A          171 YSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKL-PVDKTTSCCFG  249 (297)
T ss_dssp             TEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEEC-SSSBEEEEEEE
T ss_pred             CcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEEC-CCCCceEEEEe
Confidence            89999997  45543     2222   245788999999864          2334444566666655 55678999998


Q ss_pred             -CCCCeEEEe
Q 046394          232 -PYEDVLGIG  240 (378)
Q Consensus       232 -p~g~~l~~~  240 (378)
                       |+++.|.++
T Consensus       250 g~d~~~L~vt  259 (297)
T 3g4e_A          250 GKNYSEMYVT  259 (297)
T ss_dssp             SGGGCEEEEE
T ss_pred             CCCCCEEEEE
Confidence             887755433

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.20  E-value=2.9e-08  Score=88.28  Aligned_cols=225  Identities=13%  Similarity=0.004  Sum_probs=145.2

Q ss_pred             cceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEe----------CCCcEEEEe-CCCCeEEeeccC-------
Q 046394           24 EAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAG----------CKGYPYFYN-RDGTELHCSKEH-------   85 (378)
Q Consensus        24 ~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~----------~dg~i~iwd-~~~~~~~~~~~~-------   85 (378)
                      ++.|.++|..+++.+..+.....+ . +++||||+++++++          .++.|.+|| .+...+..+.-.       
T Consensus        58 ~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~  135 (386)
T 3sjl_D           58 VTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLV  135 (386)
T ss_dssp             SEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCB
T ss_pred             CCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCcccccc
Confidence            579999999999999988875443 4 99999999888775          357899999 456666665432       


Q ss_pred             -CCeeEEEE-----EEEEEe--CCCeEEEEEcCCCcEEEEEecCCC-------CeeEEEEcCCCCEEEEEcCC-Cee-e-
Q 046394           86 -GEVLKLQF-----LLASIN--KLGQLRYQNVTMGEIVGNFWTGLG-------RTDVIRVNPFNGVVSLGHSG-GTM-L-  147 (378)
Q Consensus        86 -~~~~~l~~-----~l~s~~--~d~~i~iwd~~~~~~~~~~~~~~~-------~v~~~~~s~~~~~l~~~~~d-~~~-~-  147 (378)
                       ..+..+.|     +++.+.  .++.|.++|+.+++.+.++.....       .-.-++.++||+++++.... +.. . 
T Consensus       136 g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~  215 (386)
T 3sjl_D          136 GTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEIT  215 (386)
T ss_dssp             SCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEE
T ss_pred             CCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCcceeecCCCceeEEECCCCCEEEEECCCCCeEEEe
Confidence             13467777     444443  368999999999999888864211       11124777888877777654 431 0 


Q ss_pred             --ec----CCCEE-EEEEe-cCCCEEEEEECCCeEEEEEcCCce--eeeee-------------cCCceEEEEecCCCc-
Q 046394          148 --CH----QGPVS-ALAFH-PNGHLMATSGKDCKIKIWDLRKYE--VLQTL-------------PGHAKTLDFSRKDSG-  203 (378)
Q Consensus       148 --~h----~~~v~-~~~~s-p~g~~l~t~~~d~~i~iwd~~~~~--~~~~~-------------~~~i~~~~~sp~g~~-  203 (378)
                        .+    ..++. ...|. ++|++++ .+.+|.|.+.|+.+..  .+..+             +.....++++|++.. 
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~l  294 (386)
T 3sjl_D          216 HTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRI  294 (386)
T ss_dssp             ECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEE
T ss_pred             ecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeE
Confidence              11    11221 23554 5775444 6668999999997653  22221             234455777777664 


Q ss_pred             -------------------cccCCCCCceEEEeeccCCcceeeeEEcCCCC-eEEEe-cCCCeEEEEEcCC
Q 046394          204 -------------------DFSGSHNYNRYMGYSMVKGYQIGKVSFRPYED-VLGIG-HSMGVSGILIPGS  253 (378)
Q Consensus       204 -------------------~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~-~l~~~-~~~g~~~~~~~~s  253 (378)
                                         .+.+..+.+.+..+..  +..+.+|.++||++ .|.++ ..++.+.++...+
T Consensus       295 yV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~v--g~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t  363 (386)
T 3sjl_D          295 YLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM--GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAES  363 (386)
T ss_dssp             EEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE--EEEECEEEECSSSSCEEEEEETTTTEEEEEETTT
T ss_pred             EEEeccccccccCCCCCEEEEEECCCCeEEEEEEC--CCCcceEEECCCCCeEEEEEcCCCCeEEEEECCC
Confidence                               1234445555555543  34688999999996 55554 4467666666544

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.18  E-value=1.9e-08  Score=87.61  Aligned_cols=208  Identities=12%  Similarity=0.005  Sum_probs=133.6

Q ss_pred             eeeEEeecCCCCceEEEEcCCCC-EEEEEeCCCcEEEEeCCCCeEEeeccCCC-eeEEEE-----EEEEEeCCCeEEEEE
Q 046394           36 RNQYDIMLPELGPYTLDFTSSGR-YMAAAGCKGYPYFYNRDGTELHCSKEHGE-VLKLQF-----LLASINKLGQLRYQN  108 (378)
Q Consensus        36 ~~~~~l~~~~~~v~~~~~sp~g~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~l~~-----~l~s~~~d~~i~iwd  108 (378)
                      ..+..+..+.....+..|+|+|+ +++++..++.|..|+.++. ...+..+.. +..+.+     ++++...++.|.+|+
T Consensus        35 ~~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~  113 (305)
T 3dr2_A           35 ARLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWREDGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSD  113 (305)
T ss_dssp             CCCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETTSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEEC
T ss_pred             CceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCCCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEEC
Confidence            34455555556678999999998 5566666889999998665 444444444 488888     555555567899999


Q ss_pred             cCCCcEEEEEecC----CCCeeEEEEcCCCCEEEE----EcCC-------------Ce---eee---------cCCCEEE
Q 046394          109 VTMGEIVGNFWTG----LGRTDVIRVNPFNGVVSL----GHSG-------------GT---MLC---------HQGPVSA  155 (378)
Q Consensus       109 ~~~~~~~~~~~~~----~~~v~~~~~s~~~~~l~~----~~~d-------------~~---~~~---------h~~~v~~  155 (378)
                      .. ++........    ...++.++++|+|.++++    |...             +.   +..         .......
T Consensus       114 ~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~p~g  192 (305)
T 3dr2_A          114 AD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMADLDHPNG  192 (305)
T ss_dssp             TT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEEEESSEEE
T ss_pred             CC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEecCCCCcc
Confidence            85 6543222111    235678999999998886    3321             11   111         2234567


Q ss_pred             EEEecCCCEEEEEECC------CeEEEEEcCCceee--eee----cCCceEEEEecCCCcccc--------CCCCCceEE
Q 046394          156 LAFHPNGHLMATSGKD------CKIKIWDLRKYEVL--QTL----PGHAKTLDFSRKDSGDFS--------GSHNYNRYM  215 (378)
Q Consensus       156 ~~~sp~g~~l~t~~~d------~~i~iwd~~~~~~~--~~~----~~~i~~~~~sp~g~~~~~--------~~~~~~~~~  215 (378)
                      ++|+|+++.|+.+...      +.|.+||+..+...  ..+    ...+..++++++|.+.+.        +. .+..+.
T Consensus       193 l~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~~~gv~~~~~-~g~~~~  271 (305)
T 3dr2_A          193 LAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSSSGTGVCVFDS-DGQLLG  271 (305)
T ss_dssp             EEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEECCSSEEEEECT-TSCEEE
T ss_pred             eEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEecCCcEEEECC-CCCEEE
Confidence            8999999987777655      78999998764421  111    345677889998884222        22 233333


Q ss_pred             EeeccCCcceeeeEEcCCCCeEEEecCCCeEEE
Q 046394          216 GYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGI  248 (378)
Q Consensus       216 ~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~  248 (378)
                      .+.. +. .+.+++|+|++..|.+++.++...+
T Consensus       272 ~~~~-~~-~~~~~~f~~d~~~L~it~~~~l~~~  302 (305)
T 3dr2_A          272 HIPT-PG-TASNCTFDQAQQRLFITGGPCLWML  302 (305)
T ss_dssp             EEEC-SS-CCCEEEECTTSCEEEEEETTEEEEE
T ss_pred             EEEC-CC-ceeEEEEeCCCCEEEEEcCCeEEEE
Confidence            4433 22 4788999999888887777765444

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.18  E-value=6.8e-09  Score=91.52  Aligned_cols=177  Identities=7%  Similarity=-0.011  Sum_probs=125.6

Q ss_pred             eeEEEe-ccceeeeeecccceeeEEeecCC-----CCceEEEEcCCCCEEEEEe--CCCcEEEEeC-CCCeEEeeccCCC
Q 046394           17 KTWRIK-QEAIAREVDILSSRNQYDIMLPE-----LGPYTLDFTSSGRYMAAAG--CKGYPYFYNR-DGTELHCSKEHGE   87 (378)
Q Consensus        17 ~~~~~~-~~~~i~~~d~~~~~~~~~l~~~~-----~~v~~~~~sp~g~~l~~~~--~dg~i~iwd~-~~~~~~~~~~~~~   87 (378)
                      +.|... .++.|.+||+.+++....+....     ..+..+++ . +..|+++.  .++.|.++|. ++..+..+.....
T Consensus        96 ~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~-~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~  173 (328)
T 3dsm_A           96 KAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-Y-GKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQ  173 (328)
T ss_dssp             EEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-E-TTEEEEEECTTCCEEEEEETTTTEEEEEEECSSC
T ss_pred             eEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-E-CCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCC
Confidence            455444 57899999999998877776543     15667888 3 44555554  4889999995 4566666665545


Q ss_pred             eeEEEE-----EEEEEeCC----------CeEEEEEcCCCcEEEEEecC-CCCeeEEEEcCCCCEEEEEcCCCe------
Q 046394           88 VLKLQF-----LLASINKL----------GQLRYQNVTMGEIVGNFWTG-LGRTDVIRVNPFNGVVSLGHSGGT------  145 (378)
Q Consensus        88 ~~~l~~-----~l~s~~~d----------~~i~iwd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~d~~------  145 (378)
                      +..+.+     +++++..+          +.|.++|..+++....+... ...+..++|+|++..|+++.. ..      
T Consensus       174 p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~-~v~~~d~~  252 (328)
T 3dsm_A          174 PTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN-DIWRMPVE  252 (328)
T ss_dssp             BCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS-SEEEEETT
T ss_pred             ccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc-EEEEEECC
Confidence            567777     44554443          78999999999887777643 246899999999998887765 22      


Q ss_pred             ---e------eecCCCEEEEEEec-CCCEEEEE----ECCCeEEEEEcCCceeeeee--cCCceEEEE
Q 046394          146 ---M------LCHQGPVSALAFHP-NGHLMATS----GKDCKIKIWDLRKYEVLQTL--PGHAKTLDF  197 (378)
Q Consensus       146 ---~------~~h~~~v~~~~~sp-~g~~l~t~----~~d~~i~iwd~~~~~~~~~~--~~~i~~~~~  197 (378)
                         +      ..+......++++| +++++++.    ..++.|.+||.. ++.+.++  ......++|
T Consensus       253 t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~G~~P~~~~~  319 (328)
T 3dsm_A          253 ADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYVGIIPGAFCW  319 (328)
T ss_dssp             CSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEEEESEEEEEE
T ss_pred             CCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEEeccCcceEEE
Confidence               1      11135678999999 66666776    678899999998 8888887  445556655

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.16  E-value=4.7e-09  Score=102.56  Aligned_cols=176  Identities=12%  Similarity=0.116  Sum_probs=119.1

Q ss_pred             eeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCc----------------EEEEeCCCCe---EEeecc--
Q 046394           26 IAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGY----------------PYFYNRDGTE---LHCSKE--   84 (378)
Q Consensus        26 ~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~----------------i~iwd~~~~~---~~~~~~--   84 (378)
                      .|++||+.+++.......+ ..+.+++|+|||+.|+.++.++.                |++|++.+..   ...+..  
T Consensus       152 ~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~  230 (710)
T 2xdw_A          152 TIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPD  230 (710)
T ss_dssp             EEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTT
T ss_pred             EEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCC
Confidence            8999999999876533222 23678999999999999988766                9999964432   222232  


Q ss_pred             CCCe-eEEEE-----EEEEEeC-----CCeEEEEEcCC------Cc-EEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe-
Q 046394           85 HGEV-LKLQF-----LLASINK-----LGQLRYQNVTM------GE-IVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT-  145 (378)
Q Consensus        85 ~~~~-~~l~~-----~l~s~~~-----d~~i~iwd~~~------~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~-  145 (378)
                      +... ..+.|     .|+.++.     +..|.+||+.+      +. ....+..+...+.. .|+|+|..|+..+..+. 
T Consensus       231 ~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~  309 (710)
T 2xdw_A          231 EPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSP  309 (710)
T ss_dssp             CTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCT
T ss_pred             CCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCC
Confidence            3333 67777     4444432     57899999986      53 34555555555544 58888887665554321 


Q ss_pred             -------------------eeecCC--CEEEEEEecCCCEEEEEECCCe--EEEEEcCCceeeeee---cCCceEEEEec
Q 046394          146 -------------------MLCHQG--PVSALAFHPNGHLMATSGKDCK--IKIWDLRKYEVLQTL---PGHAKTLDFSR  199 (378)
Q Consensus       146 -------------------~~~h~~--~v~~~~~sp~g~~l~t~~~d~~--i~iwd~~~~~~~~~~---~~~i~~~~~sp  199 (378)
                                         +..|..  .+.+++|++++.++++...|+.  |.+||+.+++.+..+   .+.+..++++|
T Consensus       310 ~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~  389 (710)
T 2xdw_A          310 NYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQK  389 (710)
T ss_dssp             TCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCT
T ss_pred             CCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCC
Confidence                               223333  5778999988888888888884  667787778776666   35577788888


Q ss_pred             CCCc
Q 046394          200 KDSG  203 (378)
Q Consensus       200 ~g~~  203 (378)
                      ++..
T Consensus       390 d~~~  393 (710)
T 2xdw_A          390 KDTE  393 (710)
T ss_dssp             TCSE
T ss_pred             CCCE
Confidence            8863

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.16  E-value=2.6e-08  Score=90.05  Aligned_cols=226  Identities=12%  Similarity=-0.013  Sum_probs=149.9

Q ss_pred             ceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEe----------CCCcEEEEe-CCCCeEEeeccC--------
Q 046394           25 AIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAG----------CKGYPYFYN-RDGTELHCSKEH--------   85 (378)
Q Consensus        25 ~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~----------~dg~i~iwd-~~~~~~~~~~~~--------   85 (378)
                      +.|.++|+.+++.+..+..... . .+++||||++|+++.          .++.|.++| .++..+..+.-.        
T Consensus        99 ~~VsVID~~t~~vv~~I~vG~~-P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g  176 (426)
T 3c75_H           99 TQQFVIDGSTGRILGMTDGGFL-P-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVG  176 (426)
T ss_dssp             EEEEEEETTTTEEEEEEEECSS-C-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBS
T ss_pred             CeEEEEECCCCEEEEEEECCCC-C-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccC
Confidence            6899999999999999987644 4 999999999888876          367899999 456666665432        


Q ss_pred             CCeeEEEE-----EEEEEe-C-CCeEEEEEcCCCcEEEEEecCCC-------CeeEEEEcCCCCEEEEEcCCCeeee---
Q 046394           86 GEVLKLQF-----LLASIN-K-LGQLRYQNVTMGEIVGNFWTGLG-------RTDVIRVNPFNGVVSLGHSGGTMLC---  148 (378)
Q Consensus        86 ~~~~~l~~-----~l~s~~-~-d~~i~iwd~~~~~~~~~~~~~~~-------~v~~~~~s~~~~~l~~~~~d~~~~~---  148 (378)
                      ..+..+.|     +++.+. . ++.|.+.|+.+++.+..+.....       .-..+.++++|+++++...++....   
T Consensus       177 ~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~  256 (426)
T 3c75_H          177 TYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNT  256 (426)
T ss_dssp             CCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEEC
T ss_pred             CCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEee
Confidence            22356667     555544 2 68899999999999888875321       1223667788887777664443110   


Q ss_pred             -----cCCCE-EEEEEecCCCEEEEEECCCeEEEEEcCCcee--eeee-------------cCCceEEEEecCCCc----
Q 046394          149 -----HQGPV-SALAFHPNGHLMATSGKDCKIKIWDLRKYEV--LQTL-------------PGHAKTLDFSRKDSG----  203 (378)
Q Consensus       149 -----h~~~v-~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~--~~~~-------------~~~i~~~~~sp~g~~----  203 (378)
                           ...++ ..+.|++++..++..+..+.|.+.|+.....  +..+             +.....++++|+|.+    
T Consensus       257 ~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa  336 (426)
T 3c75_H          257 EVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLL  336 (426)
T ss_dssp             CCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEE
T ss_pred             eeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEE
Confidence                 01111 1346789988888778889999999865432  1111             122334788888763    


Q ss_pred             ----------------cccCCCCCceEEEeeccCCcceeeeEEcCCCC-eEEEec-CCCeEEEEEcCCC
Q 046394          204 ----------------DFSGSHNYNRYMGYSMVKGYQIGKVSFRPYED-VLGIGH-SMGVSGILIPGSG  254 (378)
Q Consensus       204 ----------------~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~-~l~~~~-~~g~~~~~~~~s~  254 (378)
                                      .+.+..+.+.+..+..  +.....+.|+|||+ .|+++. .++.+.++...+.
T Consensus       337 ~~~~~~gthk~~s~~VsVID~~T~kvv~~I~v--g~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~  403 (426)
T 3c75_H          337 VDQRDEWKHKAASRFVVVLNAETGERINKIEL--GHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATG  403 (426)
T ss_dssp             EEECCTTCTTSCEEEEEEEETTTCCEEEEEEE--EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTC
T ss_pred             ecccccccccCCCCEEEEEECCCCeEEEEEEC--CCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCC
Confidence                            1223344555555543  23578999999998 777666 4777666665443

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.16  E-value=2.9e-08  Score=87.36  Aligned_cols=189  Identities=11%  Similarity=-0.053  Sum_probs=118.6

Q ss_pred             ceEEEEcCCCC-EEEEEeCCCcEEEEeCCCCeEEeeccCCCeeEEEE----EEEEEeCCCeEEEEEcCCCcEEEEEecC-
Q 046394           48 PYTLDFTSSGR-YMAAAGCKGYPYFYNRDGTELHCSKEHGEVLKLQF----LLASINKLGQLRYQNVTMGEIVGNFWTG-  121 (378)
Q Consensus        48 v~~~~~sp~g~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~l~~----~l~s~~~d~~i~iwd~~~~~~~~~~~~~-  121 (378)
                      ..+.+|+|++. ++++...++.|.+||..+.....+.....+.++.|    .++.++.+ .|.+||..+++........ 
T Consensus        51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~~~~v~~i~~~~dg~l~v~~~~-gl~~~d~~~g~~~~~~~~~~  129 (326)
T 2ghs_A           51 GEGPTFDPASGTAWWFNILERELHELHLASGRKTVHALPFMGSALAKISDSKQLIASDD-GLFLRDTATGVLTLHAELES  129 (326)
T ss_dssp             EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEECSSCEEEEEEEETTEEEEEETT-EEEEEETTTCCEEEEECSST
T ss_pred             CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEEEECCCcceEEEEeCCCeEEEEECC-CEEEEECCCCcEEEEeeCCC
Confidence            46889999755 55565568899999977666555543344577777    33334444 4999999888764333211 


Q ss_pred             ---CCCeeEEEEcCCCCEEEEEcCC------Ce-----------eeecCCCEEEEEEecCCCEEEEE-ECCCeEEEEEcC
Q 046394          122 ---LGRTDVIRVNPFNGVVSLGHSG------GT-----------MLCHQGPVSALAFHPNGHLMATS-GKDCKIKIWDLR  180 (378)
Q Consensus       122 ---~~~v~~~~~s~~~~~l~~~~~d------~~-----------~~~h~~~v~~~~~sp~g~~l~t~-~~d~~i~iwd~~  180 (378)
                         ...++.++++|+|.++++....      +.           +..+......++|+|+|+.++.+ +.++.|.+||+.
T Consensus       130 ~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~  209 (326)
T 2ghs_A          130 DLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLD  209 (326)
T ss_dssp             TCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBC
T ss_pred             CCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEeCCcEEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcc
Confidence               1357899999999976654321      11           11122345688999999876554 457899999986


Q ss_pred             --Cc-ee-----eeee---cCCceEEEEecCCCccc----------cCCCCCceEEEeeccCCcceeeeEEc-CCCCeEE
Q 046394          181 --KY-EV-----LQTL---PGHAKTLDFSRKDSGDF----------SGSHNYNRYMGYSMVKGYQIGKVSFR-PYEDVLG  238 (378)
Q Consensus       181 --~~-~~-----~~~~---~~~i~~~~~sp~g~~~~----------~~~~~~~~~~~~~~~~~~~v~~~~~s-p~g~~l~  238 (378)
                        ++ ..     +..+   ...+..++++++|.+.+          ++. ....+..+.. +...+++++|+ |++..|.
T Consensus       210 ~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~-~~~~~~~~af~g~d~~~L~  287 (326)
T 2ghs_A          210 ARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEV-PGKQTTCPAFIGPDASRLL  287 (326)
T ss_dssp             TTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEEC-SCSBEEEEEEESTTSCEEE
T ss_pred             cccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEEC-CCCCcEEEEEecCCCCEEE
Confidence              55 32     2222   23467788888886422          222 2334444444 44568888887 7776553


Q ss_pred             E
Q 046394          239 I  239 (378)
Q Consensus       239 ~  239 (378)
                      +
T Consensus       288 v  288 (326)
T 2ghs_A          288 V  288 (326)
T ss_dssp             E
T ss_pred             E
Confidence            3

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.15  E-value=2.6e-07  Score=82.68  Aligned_cols=220  Identities=12%  Similarity=-0.042  Sum_probs=130.8

Q ss_pred             eeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEe----------CCCcEEEEeC-CCCeEEeeccC--------C
Q 046394           26 IAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAG----------CKGYPYFYNR-DGTELHCSKEH--------G   86 (378)
Q Consensus        26 ~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~----------~dg~i~iwd~-~~~~~~~~~~~--------~   86 (378)
                      .|.++|..+++.+..+... ... .+++||||++|+++.          .++.|.+||. +...+..+...        .
T Consensus        48 ~v~v~D~~t~~~~~~i~~g-~~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~  125 (373)
T 2mad_H           48 QQWVLDAGSGSILGHVNGG-FLP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGP  125 (373)
T ss_pred             EEEEEECCCCeEEEEecCC-CCC-CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCC
Confidence            7899999999988777764 334 999999999999886          3678999995 45555554322        1


Q ss_pred             CeeEEEE-----EEEEEe-C-CCeEEEEEcCCCcEEEE-EecCCC-------CeeEEEEcCCCCEEEEEcCCCeee----
Q 046394           87 EVLKLQF-----LLASIN-K-LGQLRYQNVTMGEIVGN-FWTGLG-------RTDVIRVNPFNGVVSLGHSGGTML----  147 (378)
Q Consensus        87 ~~~~l~~-----~l~s~~-~-d~~i~iwd~~~~~~~~~-~~~~~~-------~v~~~~~s~~~~~l~~~~~d~~~~----  147 (378)
                      .+..+.|     +++.++ . ++.|.++| .+++.+.. +.....       .-..+.++++|..++... .+...    
T Consensus       126 ~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~  203 (373)
T 2mad_H          126 YSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGL  203 (373)
T ss_pred             CccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCceEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEe
Confidence            2356666     555544 3 58899999 99998877 543211       001123445555444443 33211    


Q ss_pred             -----ecCCC-EEEEEEecCCCEEEEEECCCeEEEEEcCCce--eeeee-------------cCCceEEEEecCCCcc--
Q 046394          148 -----CHQGP-VSALAFHPNGHLMATSGKDCKIKIWDLRKYE--VLQTL-------------PGHAKTLDFSRKDSGD--  204 (378)
Q Consensus       148 -----~h~~~-v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~--~~~~~-------------~~~i~~~~~sp~g~~~--  204 (378)
                           ....+ .....+.+++..++..+.++.|.+.|+.+..  .+..+             +.....+.++|++...  
T Consensus       204 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV  283 (373)
T 2mad_H          204 VGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYL  283 (373)
T ss_pred             ccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEE
Confidence                 00111 1224566666555555578899999997542  22222             1223346778876531  


Q ss_pred             ------------------ccCCCCCceEEEeeccCCcceeeeEEcCCCC-eEEEec-CCCeEEEEEc
Q 046394          205 ------------------FSGSHNYNRYMGYSMVKGYQIGKVSFRPYED-VLGIGH-SMGVSGILIP  251 (378)
Q Consensus       205 ------------------~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~-~l~~~~-~~g~~~~~~~  251 (378)
                                        +.+..+.+.+..+..  +....++.|+|||+ .|+++. .++.+.++..
T Consensus       284 ~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~--g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~  348 (373)
T 2mad_H          284 LTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL--GHDVDAISVAQDGGPDLYALSAGTEVLHIYDA  348 (373)
T ss_pred             EeccCCcccccCCCCeEEEEECCCCEEEEEEEC--CCCcCeEEECCCCCeEEEEEcCCCCeEEEEEC
Confidence                              123344445455543  34578999999998 565555 3555555543

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.13  E-value=9.5e-08  Score=86.76  Aligned_cols=167  Identities=12%  Similarity=0.091  Sum_probs=108.5

Q ss_pred             eeeEEEec-cceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCC--cEEEEeCC-CCeEEee----c-cCC
Q 046394           16 EKTWRIKQ-EAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKG--YPYFYNRD-GTELHCS----K-EHG   86 (378)
Q Consensus        16 ~~~~~~~~-~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg--~i~iwd~~-~~~~~~~----~-~~~   86 (378)
                      .+.|.... ++.|+.||..++......... .... ++|+|+++.|+++..++  .|.+|+.. +.....+    . ...
T Consensus       142 g~lyv~d~~~~~I~~id~~~g~~~~~~~~~-~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~  219 (409)
T 3hrp_A          142 NTVLAYQRDDPRVRLISVDDNKVTTVHPGF-KGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSG  219 (409)
T ss_dssp             TEEEEEETTTTEEEEEETTTTEEEEEEETC-CBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCS
T ss_pred             CCEEEEecCCCcEEEEECCCCEEEEeeccC-CCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcC
Confidence            33444433 478999999887765544442 3344 99999999999888766  78888844 3333333    2 122


Q ss_pred             CeeEEEE-----EEEEEeCCCeEEEEEcCCCcEEEE----EecCCCCe--eEEEEcCCCC-EEEEEcCCCe---------
Q 046394           87 EVLKLQF-----LLASINKLGQLRYQNVTMGEIVGN----FWTGLGRT--DVIRVNPFNG-VVSLGHSGGT---------  145 (378)
Q Consensus        87 ~~~~l~~-----~l~s~~~d~~i~iwd~~~~~~~~~----~~~~~~~v--~~~~~s~~~~-~l~~~~~d~~---------  145 (378)
                      .+.++++     .|+.+..++.|..||..++.....    ........  +.++|+|++. ++++-..++.         
T Consensus       220 ~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~  299 (409)
T 3hrp_A          220 KIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE  299 (409)
T ss_dssp             CCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC
T ss_pred             CcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC
Confidence            3467777     455567788999999987764322    11222222  3999999654 4444444443         


Q ss_pred             ---eeecC---------------CCEEEEEEecCCCEEEEEE-CCCeEEEEEcCCcee
Q 046394          146 ---MLCHQ---------------GPVSALAFHPNGHLMATSG-KDCKIKIWDLRKYEV  184 (378)
Q Consensus       146 ---~~~h~---------------~~v~~~~~sp~g~~l~t~~-~d~~i~iwd~~~~~~  184 (378)
                         +.++.               .....++++|+|+++++-+ .++.|+.||+.++..
T Consensus       300 ~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v  357 (409)
T 3hrp_A          300 CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYV  357 (409)
T ss_dssp             EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEE
T ss_pred             EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEE
Confidence               22221               3478899999999888877 788999999877764

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.11  E-value=2.1e-07  Score=87.89  Aligned_cols=186  Identities=11%  Similarity=0.074  Sum_probs=124.5

Q ss_pred             ceeeEEEeccceeeeeecc--cceeeEEeecCCCCceEEEEc----CCCCEEEEEeC-CCcEEEEe-CCCCeEEeecc--
Q 046394           15 VEKTWRIKQEAIAREVDIL--SSRNQYDIMLPELGPYTLDFT----SSGRYMAAAGC-KGYPYFYN-RDGTELHCSKE--   84 (378)
Q Consensus        15 ~~~~~~~~~~~~i~~~d~~--~~~~~~~l~~~~~~v~~~~~s----p~g~~l~~~~~-dg~i~iwd-~~~~~~~~~~~--   84 (378)
                      ....|....++.|.+||+.  +++.+..+... ..+..++||    |||+++++++. +++|.|+| .+.+.+..+..  
T Consensus       208 Gr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G-~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~  286 (567)
T 1qks_A          208 GRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG-SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRG  286 (567)
T ss_dssp             SCEEEEEETTSEEEEEETTSSSCCEEEEEECC-SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCE
T ss_pred             CCEEEEEcCCCeEEEEECCCCCCcEeEEEecC-CCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccc
Confidence            3445555667899999996  88888888764 467899999    79999888766 68999999 45566655432  


Q ss_pred             --------CCC--eeEEEE------EEEEEeCCCeEEEEEcCCCcEE--EEEecCCCCeeEEEEcCCCCEEEEEcCC-Ce
Q 046394           85 --------HGE--VLKLQF------LLASINKLGQLRYQNVTMGEIV--GNFWTGLGRTDVIRVNPFNGVVSLGHSG-GT  145 (378)
Q Consensus        85 --------~~~--~~~l~~------~l~s~~~d~~i~iwd~~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~~d-~~  145 (378)
                              |..  +..+.+      ++++...+|.|.++|..+...+  ..+. .......+.|+|++++|+++... +.
T Consensus       287 ~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~-~~~~~~d~~~~pdgr~~~va~~~sn~  365 (567)
T 1qks_A          287 MTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEIS-AERFLHDGGLDGSHRYFITAANARNK  365 (567)
T ss_dssp             ECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEE-CCSSEEEEEECTTSCEEEEEEGGGTE
T ss_pred             cccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeee-ccccccCceECCCCCEEEEEeCCCCe
Confidence                    112  234443      5666677899999998775432  2232 33457789999999988877643 32


Q ss_pred             --------------ee-----ecCCCEEEEEEecCCCE-EEEEE-CCCeEEEEEcCC-------ceeeeee--c-CCceE
Q 046394          146 --------------ML-----CHQGPVSALAFHPNGHL-MATSG-KDCKIKIWDLRK-------YEVLQTL--P-GHAKT  194 (378)
Q Consensus       146 --------------~~-----~h~~~v~~~~~sp~g~~-l~t~~-~d~~i~iwd~~~-------~~~~~~~--~-~~i~~  194 (378)
                                    +.     .|.+.-..+ ++|++.. ++++. .+++|.++|..+       .+.+.++  . .....
T Consensus       366 V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~  444 (567)
T 1qks_A          366 LVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLF  444 (567)
T ss_dssp             EEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCC
T ss_pred             EEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEE
Confidence                          11     133222222 5887444 45554 468999999987       5677777  2 23345


Q ss_pred             EEEecCCCc
Q 046394          195 LDFSRKDSG  203 (378)
Q Consensus       195 ~~~sp~g~~  203 (378)
                      +..+|++++
T Consensus       445 i~~~p~~~~  453 (567)
T 1qks_A          445 IKTHPNSQY  453 (567)
T ss_dssp             EECCTTCSE
T ss_pred             EEeCCCCCe
Confidence            778888875

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.11  E-value=2.1e-07  Score=80.23  Aligned_cols=208  Identities=9%  Similarity=0.035  Sum_probs=134.2

Q ss_pred             eecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEe-eccC-CCeeEEEE-----EEEEEeCCCeEEEEEcCCCc
Q 046394           41 IMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTELHC-SKEH-GEVLKLQF-----LLASINKLGQLRYQNVTMGE  113 (378)
Q Consensus        41 l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~-~~~~-~~~~~l~~-----~l~s~~~d~~i~iwd~~~~~  113 (378)
                      +......+.+++++++|+..++...++.|.+||..+..... +... ..+.++++     ++++...++.|..||.. ++
T Consensus        15 ~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~   93 (300)
T 2qc5_A           15 LSIPDSGPYGITSSEDGKVWFTQHKANKISSLDQSGRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GG   93 (300)
T ss_dssp             CSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred             cCCCCCCcceeeECCCCCEEEEcCCCCeEEEECCCCceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CC
Confidence            33345678999999999977777678899999976443321 2222 23477777     56665667889999987 65


Q ss_pred             EEE-EEecCCCCeeEEEEcCCCCEEEEEcCCCe---------e-----eecCCCEEEEEEecCCCEEEEEECCCeEEEEE
Q 046394          114 IVG-NFWTGLGRTDVIRVNPFNGVVSLGHSGGT---------M-----LCHQGPVSALAFHPNGHLMATSGKDCKIKIWD  178 (378)
Q Consensus       114 ~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~d~~---------~-----~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd  178 (378)
                      ... .+......+.++++++++.++++...++.         +     ......+.+++++|+|+++++...++.|..||
T Consensus        94 ~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~  173 (300)
T 2qc5_A           94 FTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTADGTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRIT  173 (300)
T ss_dssp             EEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEEC
T ss_pred             eEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCCCCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEEC
Confidence            532 22223467899999999988777664444         1     11235688999999999777776788999999


Q ss_pred             cCCceeeee-e---cCCceEEEEecCCCccccCCCCCc--------eEEEeec-cCCcceeeeEEcCCCCeEEEecCCCe
Q 046394          179 LRKYEVLQT-L---PGHAKTLDFSRKDSGDFSGSHNYN--------RYMGYSM-VKGYQIGKVSFRPYEDVLGIGHSMGV  245 (378)
Q Consensus       179 ~~~~~~~~~-~---~~~i~~~~~sp~g~~~~~~~~~~~--------~~~~~~~-~~~~~v~~~~~sp~g~~l~~~~~~g~  245 (378)
                      . +++.... +   ...+..++++++|...+.+.....        .+..+.. .....+.+++++++|.++++...++.
T Consensus       174 ~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~  252 (300)
T 2qc5_A          174 N-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITTTGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQ  252 (300)
T ss_dssp             T-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTE
T ss_pred             C-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcCCCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCe
Confidence            8 5554432 2   245788999998865332211111        1111111 12345778889998876666655555


Q ss_pred             EEEEE
Q 046394          246 SGILI  250 (378)
Q Consensus       246 ~~~~~  250 (378)
                      +..+.
T Consensus       253 i~~~~  257 (300)
T 2qc5_A          253 IGRIT  257 (300)
T ss_dssp             EEEEC
T ss_pred             EEEEC
Confidence            44443

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.10  E-value=9.1e-09  Score=91.15  Aligned_cols=164  Identities=7%  Similarity=-0.004  Sum_probs=107.5

Q ss_pred             eeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCC---------------------------CcEEEEeCCCCe
Q 046394           26 IAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCK---------------------------GYPYFYNRDGTE   78 (378)
Q Consensus        26 ~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~d---------------------------g~i~iwd~~~~~   78 (378)
                      .|.+||+.+++.......+ . +.+++|+|||+.|+.++.+                           ..|++||..+..
T Consensus        86 ~l~~~~~~~g~~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~  163 (347)
T 2gop_A           86 EIWVADLETLSSKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEE  163 (347)
T ss_dssp             EEEEEETTTTEEEEEEEES-E-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTE
T ss_pred             eEEEEECCCCceEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCe
Confidence            4778888887765544444 4 8999999999998887642                           568999975554


Q ss_pred             E-EeeccCCCeeEEEE----EEEEEeCC------C-eEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCC--
Q 046394           79 L-HCSKEHGEVLKLQF----LLASINKL------G-QLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGG--  144 (378)
Q Consensus        79 ~-~~~~~~~~~~~l~~----~l~s~~~d------~-~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~--  144 (378)
                      . ..+... .+..+.|    ++++++.+      . ...||.+.+++.. .+..+ ..+..+  +|+|+.|+.++.+.  
T Consensus       164 ~~~~l~~~-~~~~~~~spdg~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-~l~~~-~~~~~~--spdg~~l~~~~~~~~~  238 (347)
T 2gop_A          164 VIEEFEKP-RFSSGIWHRDKIVVNVPHREIIPQYFKFWDIYIWEDGKEE-KMFEK-VSFYAV--DSDGERILLYGKPEKK  238 (347)
T ss_dssp             EEEEEEEE-TTCEEEEETTEEEEEEECCCSSCCSSCCEEEEEEETTEEE-EEEEE-ESEEEE--EECSSCEEEEECCSSS
T ss_pred             EEeeecCC-CcccccCCCCeEEEEEecccccccccccccEEEeCCCceE-EeccC-cceeeE--CCCCCEEEEEEccccC
Confidence            4 555442 4466777    55555443      2 3344444455543 33333 444443  99999877665432  


Q ss_pred             ------e------------eeecCCCEEE-EEEecCCCEEEEEECCCeEEEEEcCCceeeeee--cCCceEEEEec
Q 046394          145 ------T------------MLCHQGPVSA-LAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL--PGHAKTLDFSR  199 (378)
Q Consensus       145 ------~------------~~~h~~~v~~-~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~--~~~i~~~~~sp  199 (378)
                            .            ...|...+.. +.|+ +| ++++++.++.++|| +.+++....+  ...+.+++|+|
T Consensus       239 ~~~~~~~l~~~d~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~~~~~~~v~~~~~s~  311 (347)
T 2gop_A          239 YMSEHNKLYIYDGKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKPIAKGRHWIMGFDVDE  311 (347)
T ss_dssp             CCCSSCEEEEECSSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEEEECSSSEEEEEEESS
T ss_pred             CccccceEEEECCCceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEEEecCCCeEEeeeeeC
Confidence                  1            1234556775 8999 88 88999999999999 8766654433  35678888887

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.10  E-value=3.3e-08  Score=85.76  Aligned_cols=176  Identities=10%  Similarity=0.018  Sum_probs=114.9

Q ss_pred             ccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEeeccC----C--CeeEEEE---
Q 046394           23 QEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTELHCSKEH----G--EVLKLQF---   93 (378)
Q Consensus        23 ~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~--~~~~l~~---   93 (378)
                      ..+.|..||..++.. ..+. ....+.+++++|+|+++++ . ++.|.+||..+..+..+...    .  .++++.+   
T Consensus        33 ~~~~i~~~d~~~~~~-~~~~-~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~d  108 (297)
T 3g4e_A           33 PAKKVCRWDSFTKQV-QRVT-MDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPA  108 (297)
T ss_dssp             TTTEEEEEETTTCCE-EEEE-CSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTT
T ss_pred             CCCEEEEEECCCCcE-EEEe-CCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCC
Confidence            357888899887654 2333 3467999999999995544 4 56799999765544443222    1  1366777   


Q ss_pred             --EEEEE-eC--------CCeEEEEEcCC-CcEEEEEecCCCCeeEEEEcCCCCEEEEE-cCCCe---e-----------
Q 046394           94 --LLASI-NK--------LGQLRYQNVTM-GEIVGNFWTGLGRTDVIRVNPFNGVVSLG-HSGGT---M-----------  146 (378)
Q Consensus        94 --~l~s~-~~--------d~~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~d~~---~-----------  146 (378)
                        ++++. +.        .....+|.+.. ++... +.......+.++|+|+++.++++ +..+.   +           
T Consensus       109 G~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~-~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~  187 (297)
T 3g4e_A          109 GRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKK-YFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISN  187 (297)
T ss_dssp             SCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEE-EEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEE
T ss_pred             CCEEEecCCcccccccccCCCcEEEEEECCCCEEE-EeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccC
Confidence              44433 21        12234444432 33332 33334567899999999866544 33333   1           


Q ss_pred             -------eecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee--c-CCceEEEEe-cCCCc
Q 046394          147 -------LCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL--P-GHAKTLDFS-RKDSG  203 (378)
Q Consensus       147 -------~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~--~-~~i~~~~~s-p~g~~  203 (378)
                             ..+.+.+..++++++|++.++...++.|.+||..+++.+..+  + ..+++++|+ |++..
T Consensus       188 ~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~  255 (297)
T 3g4e_A          188 RRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSE  255 (297)
T ss_dssp             EEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEEESGGGCE
T ss_pred             cEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEEeCCCCCE
Confidence                   012245678999999998888888889999999999988887  4 578999998 77654

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.08  E-value=1.8e-07  Score=83.82  Aligned_cols=181  Identities=9%  Similarity=-0.062  Sum_probs=117.2

Q ss_pred             cceeeeeecccceeeEEeecC-------CCCceEEEEcCCCCEEEEEeC--CCcEEEEeCCCC-eEEe-eccCCCeeEEE
Q 046394           24 EAIAREVDILSSRNQYDIMLP-------ELGPYTLDFTSSGRYMAAAGC--KGYPYFYNRDGT-ELHC-SKEHGEVLKLQ   92 (378)
Q Consensus        24 ~~~i~~~d~~~~~~~~~l~~~-------~~~v~~~~~sp~g~~l~~~~~--dg~i~iwd~~~~-~~~~-~~~~~~~~~l~   92 (378)
                      ++.+.+||..+.+.+..+...       ...+..++|+|||++|++++.  ++.|.++| ... .+.. +.....+....
T Consensus        96 ~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~~~~~~  174 (373)
T 2mad_H           96 TDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTCYHIHP  174 (373)
T ss_pred             CCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCceEEEEe
Confidence            578999999998887776543       234678999999999998874  47899999 654 3444 33221111111


Q ss_pred             E---EEEEEeCCCeEEEEEcCCCcEEEEEe-----cCCCC-eeEEEEcCCCCEEEEEcCCCe---eee------------
Q 046394           93 F---LLASINKLGQLRYQNVTMGEIVGNFW-----TGLGR-TDVIRVNPFNGVVSLGHSGGT---MLC------------  148 (378)
Q Consensus        93 ~---~l~s~~~d~~i~iwd~~~~~~~~~~~-----~~~~~-v~~~~~s~~~~~l~~~~~d~~---~~~------------  148 (378)
                      +   .+++.+.||.+.++|. +++.+....     ....+ .....+.+++..++..+..+.   +..            
T Consensus       175 ~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~  253 (373)
T 2mad_H          175 GAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPID  253 (373)
T ss_pred             CCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeee
Confidence            1   5566778999999999 887764322     11111 122445555543332223222   000            


Q ss_pred             -----------cCCCEEEEEEecCCCEEEEEEC----------CCeEEEEEcCCceeeeee--cCCceEEEEecCCCccc
Q 046394          149 -----------HQGPVSALAFHPNGHLMATSGK----------DCKIKIWDLRKYEVLQTL--PGHAKTLDFSRKDSGDF  205 (378)
Q Consensus       149 -----------h~~~v~~~~~sp~g~~l~t~~~----------d~~i~iwd~~~~~~~~~~--~~~i~~~~~sp~g~~~~  205 (378)
                                 .......++++|+++.+..+..          ++.|.++|+.+++.+.++  ......+.|+|||++.+
T Consensus       254 ~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~~p~~i~~s~Dg~~~l  333 (373)
T 2mad_H          254 ALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDL  333 (373)
T ss_pred             ecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCCCcCeEEECCCCCeEE
Confidence                       1122344788999888776543          357999999999999988  56799999999998433


Q ss_pred             c
Q 046394          206 S  206 (378)
Q Consensus       206 ~  206 (378)
                      +
T Consensus       334 ~  334 (373)
T 2mad_H          334 Y  334 (373)
T ss_pred             E
Confidence            3

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.03  E-value=9e-08  Score=83.36  Aligned_cols=179  Identities=12%  Similarity=0.093  Sum_probs=118.3

Q ss_pred             eccceeeeeecccceeeEEee----cCCCCceEEEEcCC-CCEEEEEeCCCcEEEEeCCCCeEEe-eccC-----CCeeE
Q 046394           22 KQEAIAREVDILSSRNQYDIM----LPELGPYTLDFTSS-GRYMAAAGCKGYPYFYNRDGTELHC-SKEH-----GEVLK   90 (378)
Q Consensus        22 ~~~~~i~~~d~~~~~~~~~l~----~~~~~v~~~~~sp~-g~~l~~~~~dg~i~iwd~~~~~~~~-~~~~-----~~~~~   90 (378)
                      ..++.|..||..+++......    ++...+.+++++++ |+++++ +..+.|.+||..+..... ....     ..+.+
T Consensus        43 ~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~-~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~  121 (314)
T 1pjx_A           43 KPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVA-DMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCND  121 (314)
T ss_dssp             EECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEE-ETTTEEEEEETTSCEEECCSBCTTSCBCBCCCE
T ss_pred             CCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEE-ECCCCEEEEeCCCCEEEEEeccCCCccccCCcC
Confidence            346788899987776532211    14467899999999 764444 444479999977544332 2211     12477


Q ss_pred             EEE-----EEEEEeCC---------------CeEEEEEcCCCcEEEEEecCCCCeeEEEEc----CCCCEEEEE-cCCCe
Q 046394           91 LQF-----LLASINKL---------------GQLRYQNVTMGEIVGNFWTGLGRTDVIRVN----PFNGVVSLG-HSGGT  145 (378)
Q Consensus        91 l~~-----~l~s~~~d---------------~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s----~~~~~l~~~-~~d~~  145 (378)
                      +++     ++++...+               +.|..||.. ++..... ........++|+    |+++.++++ ..++.
T Consensus       122 i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~-~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~  199 (314)
T 1pjx_A          122 CAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD-TAFQFPNGIAVRHMNDGRPYQLIVAETPTKK  199 (314)
T ss_dssp             EEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE-EEESSEEEEEEEECTTSCEEEEEEEETTTTE
T ss_pred             EEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEec-cCCCCcceEEEecccCCCCCEEEEEECCCCe
Confidence            888     55555444               567777765 5544332 233456889999    999765554 33333


Q ss_pred             ---e-----------------eecC-CCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee--c-CCceEEEEecCC
Q 046394          146 ---M-----------------LCHQ-GPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL--P-GHAKTLDFSRKD  201 (378)
Q Consensus       146 ---~-----------------~~h~-~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~--~-~~i~~~~~sp~g  201 (378)
                         +                 ..+. ..+..++++++|+++++...++.|.+||..+++.+..+  + ..+.+++|+|+|
T Consensus       200 i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg  279 (314)
T 1pjx_A          200 LWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQT  279 (314)
T ss_dssp             EEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTS
T ss_pred             EEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCC
Confidence               1                 0111 45778999999999888888999999999877776666  3 678999999998


Q ss_pred             Cc
Q 046394          202 SG  203 (378)
Q Consensus       202 ~~  203 (378)
                      ..
T Consensus       280 ~~  281 (314)
T 1pjx_A          280 KT  281 (314)
T ss_dssp             SE
T ss_pred             CE
Confidence            73

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.00  E-value=2.6e-07  Score=83.86  Aligned_cols=160  Identities=7%  Similarity=-0.049  Sum_probs=106.7

Q ss_pred             CCceEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEeeccCCCe-eEEEE-----EEEEEeCCC--eEEEEEcCCCcEEEE
Q 046394           46 LGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTELHCSKEHGEV-LKLQF-----LLASINKLG--QLRYQNVTMGEIVGN  117 (378)
Q Consensus        46 ~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~l~~-----~l~s~~~d~--~i~iwd~~~~~~~~~  117 (378)
                      ..+..|+|+|+|+++++...++.|++||..+..+..+...... . ++|     .++++..++  .|.+|+...+.....
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~  209 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTR  209 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEE
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEE
Confidence            3578999999998777776778999999876666554433333 5 777     666666655  899999876654444


Q ss_pred             E----ecCCCCeeEEEEcCCCCEEEEEcCCCe------------ee------ecCCCE-E-EEEEecC-CCEEEEEECCC
Q 046394          118 F----WTGLGRTDVIRVNPFNGVVSLGHSGGT------------ML------CHQGPV-S-ALAFHPN-GHLMATSGKDC  172 (378)
Q Consensus       118 ~----~~~~~~v~~~~~s~~~~~l~~~~~d~~------------~~------~h~~~v-~-~~~~sp~-g~~l~t~~~d~  172 (378)
                      +    ......+.+++++|++..|+++..++.            +.      ++...- . .++|+|+ +.++++-..++
T Consensus       210 ~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~  289 (409)
T 3hrp_A          210 IGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLS  289 (409)
T ss_dssp             EEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTT
T ss_pred             eeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCC
Confidence            4    214467889999996555555655554            11      111111 2 8999994 66666767788


Q ss_pred             eEEEEEcCCceeeeee--c----------------CCceEEEEecCCCccccCC
Q 046394          173 KIKIWDLRKYEVLQTL--P----------------GHAKTLDFSRKDSGDFSGS  208 (378)
Q Consensus       173 ~i~iwd~~~~~~~~~~--~----------------~~i~~~~~sp~g~~~~~~~  208 (378)
                      .|+.||....  +..+  .                ..+..++++|+|.+.+.+.
T Consensus       290 ~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~  341 (409)
T 3hrp_A          290 SVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDG  341 (409)
T ss_dssp             EEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEET
T ss_pred             EEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeC
Confidence            9999997643  2222  1                2367899999998655554

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.99  E-value=1.7e-07  Score=83.41  Aligned_cols=177  Identities=12%  Similarity=0.005  Sum_probs=119.3

Q ss_pred             cceeeeeecccceeeEEeecCC-------CCceEEEEcCCCCEEEEEeC--CCcEEEEeC-CCCeEEeeccCCCeeEEEE
Q 046394           24 EAIAREVDILSSRNQYDIMLPE-------LGPYTLDFTSSGRYMAAAGC--KGYPYFYNR-DGTELHCSKEHGEVLKLQF   93 (378)
Q Consensus        24 ~~~i~~~d~~~~~~~~~l~~~~-------~~v~~~~~sp~g~~l~~~~~--dg~i~iwd~-~~~~~~~~~~~~~~~~l~~   93 (378)
                      ++.|.+||..+++.+..+....       ..+..++|+|||++|+++..  ++.|.++|. ++..+..+.... . ...+
T Consensus       108 ~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g-~-~~~~  185 (386)
T 3sjl_D          108 TDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD-C-YHIF  185 (386)
T ss_dssp             EEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS-E-EEEE
T ss_pred             CCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC-c-ceee
Confidence            5789999999999988886532       35778999999999998864  688999994 556666664322 1 1222


Q ss_pred             -----EEEEEeCCCeEEEEEcCC-CcEEEEEecC----CCCe-eEEEEc-CCCCEEEEEcCCCe---eee----------
Q 046394           94 -----LLASINKLGQLRYQNVTM-GEIVGNFWTG----LGRT-DVIRVN-PFNGVVSLGHSGGT---MLC----------  148 (378)
Q Consensus        94 -----~l~s~~~d~~i~iwd~~~-~~~~~~~~~~----~~~v-~~~~~s-~~~~~l~~~~~d~~---~~~----------  148 (378)
                           .+++.+.||.+.+.++.+ ++........    ..++ ....|. ++|++++++. ++.   +..          
T Consensus       186 P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~-~g~V~v~d~~~~~~~v~~~  264 (386)
T 3sjl_D          186 PTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTY-TGKIHQIDLSSGDAKFLPA  264 (386)
T ss_dssp             EEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBT-TSEEEEEECTTSSCEECCC
T ss_pred             cCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeC-CCEEEEEECCCCcceeecc
Confidence                 566788899999999976 5653322111    1111 123453 5665544333 343   100          


Q ss_pred             -------------cCCCEEEEEEecCCCEEEEEEC----------CCeEEEEEcCCceeeeee--cCCceEEEEecCCCc
Q 046394          149 -------------HQGPVSALAFHPNGHLMATSGK----------DCKIKIWDLRKYEVLQTL--PGHAKTLDFSRKDSG  203 (378)
Q Consensus       149 -------------h~~~v~~~~~sp~g~~l~t~~~----------d~~i~iwd~~~~~~~~~~--~~~i~~~~~sp~g~~  203 (378)
                                   ..+....++++|+++.+.....          .+.|.++|+.+++.+.++  ...+.++.++|||+.
T Consensus       265 ~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~~~~~lavs~D~~~  344 (386)
T 3sjl_D          265 VEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKP  344 (386)
T ss_dssp             EESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECSSSSC
T ss_pred             eeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCCCcceEEECCCCCe
Confidence                         0112234778998888776542          257999999999999998  567899999999973

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.97  E-value=7.5e-08  Score=85.36  Aligned_cols=77  Identities=8%  Similarity=-0.153  Sum_probs=52.5

Q ss_pred             CCCCceEEEEcCCCCEEEEEeC-----CCcEEEEeCC-CCeEEeeccCC-------CeeEEEE------EEEEEe---CC
Q 046394           44 PELGPYTLDFTSSGRYMAAAGC-----KGYPYFYNRD-GTELHCSKEHG-------EVLKLQF------LLASIN---KL  101 (378)
Q Consensus        44 ~~~~v~~~~~sp~g~~l~~~~~-----dg~i~iwd~~-~~~~~~~~~~~-------~~~~l~~------~l~s~~---~d  101 (378)
                      |-..+.+++++++|+++++-..     ++.|.+||.. +..+..+....       .+..+++      .+++..   .+
T Consensus        65 ~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~  144 (343)
T 2qe8_A           65 TFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDK  144 (343)
T ss_dssp             CCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGG
T ss_pred             ceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCC
Confidence            3457899999999876555433     5789999964 55565554321       1266666      445554   67


Q ss_pred             CeEEEEEcCCCcEEEEEec
Q 046394          102 GQLRYQNVTMGEIVGNFWT  120 (378)
Q Consensus       102 ~~i~iwd~~~~~~~~~~~~  120 (378)
                      +.|.+||+.+++....+..
T Consensus       145 ~~i~v~d~~~g~~~r~~~~  163 (343)
T 2qe8_A          145 AALIRVDLQTGLAARVLQG  163 (343)
T ss_dssp             CEEEEEETTTCCEEEECTT
T ss_pred             CeEEEEECCCCCEEEEecC
Confidence            8999999998887666543

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.95  E-value=1.5e-07  Score=91.04  Aligned_cols=171  Identities=11%  Similarity=0.084  Sum_probs=117.1

Q ss_pred             eeeEEEeccceeeeeecccceeeEEeecCCCC-----------ceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeec
Q 046394           16 EKTWRIKQEAIAREVDILSSRNQYDIMLPELG-----------PYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSK   83 (378)
Q Consensus        16 ~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~-----------v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~   83 (378)
                      +..|....++.|..+|..+++.++.+......           ..++++  ++..|++++.|+.|..+| .+|+.+..+.
T Consensus        78 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~W~~~  155 (677)
T 1kb0_A           78 GIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEVWHQN  155 (677)
T ss_dssp             TEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             CEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEEeeec
Confidence            45566666789999999999999988765321           112333  356888899999999999 5888888876


Q ss_pred             cC-C-----Ce-eEEE-E--EEEEEeC------CCeEEEEEcCCCcEEEEEecCCCC-----------------------
Q 046394           84 EH-G-----EV-LKLQ-F--LLASINK------LGQLRYQNVTMGEIVGNFWTGLGR-----------------------  124 (378)
Q Consensus        84 ~~-~-----~~-~~l~-~--~l~s~~~------d~~i~iwd~~~~~~~~~~~~~~~~-----------------------  124 (378)
                      .+ .     .. .... .  .++.++.      ++.|..||..+|+.+..+......                       
T Consensus       156 ~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~  235 (677)
T 1kb0_A          156 TFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKW  235 (677)
T ss_dssp             TTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCH
T ss_pred             CCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCce
Confidence            55 1     22 2222 2  4444443      799999999999998887643211                       


Q ss_pred             ---------eeEEEEcCCCCEEEEEcCCC-------------------e--------------ee--ecC-------CCE
Q 046394          125 ---------TDVIRVNPFNGVVSLGHSGG-------------------T--------------ML--CHQ-------GPV  153 (378)
Q Consensus       125 ---------v~~~~~s~~~~~l~~~~~d~-------------------~--------------~~--~h~-------~~v  153 (378)
                               ...++++|++..+++++.++                   .              +.  .|.       ...
T Consensus       236 ~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p  315 (677)
T 1kb0_A          236 WEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPM  315 (677)
T ss_dssp             HHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCC
T ss_pred             eEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCc
Confidence                     13578899998888877653                   1              11  111       112


Q ss_pred             EEEEEecCC---CEEEEEECCCeEEEEEcCCceeeeee
Q 046394          154 SALAFHPNG---HLMATSGKDCKIKIWDLRKYEVLQTL  188 (378)
Q Consensus       154 ~~~~~sp~g---~~l~t~~~d~~i~iwd~~~~~~~~~~  188 (378)
                      ..+....+|   ..++.++.+|.|+++|..+|+++..+
T Consensus       316 ~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~  353 (677)
T 1kb0_A          316 ILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAK  353 (677)
T ss_dssp             EEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEE
T ss_pred             EEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccc
Confidence            223333467   67889999999999999999988665

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=98.94  E-value=6.2e-08  Score=95.12  Aligned_cols=192  Identities=14%  Similarity=-0.021  Sum_probs=112.0

Q ss_pred             CCceEEEEcCCCCEEEEEeCC-C----cEEEEeCCCCeEEeeccCCCe-eEEEE----EEEEEeCCC-------------
Q 046394           46 LGPYTLDFTSSGRYMAAAGCK-G----YPYFYNRDGTELHCSKEHGEV-LKLQF----LLASINKLG-------------  102 (378)
Q Consensus        46 ~~v~~~~~sp~g~~l~~~~~d-g----~i~iwd~~~~~~~~~~~~~~~-~~l~~----~l~s~~~d~-------------  102 (378)
                      ..+.+++|||||++||.++.+ |    .|++||+.+........+... ..++|    .|+.++.++             
T Consensus       163 ~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~~~~~~~~wspD~~l~~~~~~~~~~~~~~~~~~~~  242 (741)
T 1yr2_A          163 TALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKWVKFSGLAWLGNDALLYSRFAEPKEGQAFQALNYN  242 (741)
T ss_dssp             EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEEEESCCCEESTTSEEEEEECCCC--------CCCC
T ss_pred             EEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCCceeccEEEECCCEEEEEEecCcccccccccCCCC
Confidence            357799999999999887653 3    599999655443332211111 45666    444444443             


Q ss_pred             -eEEEEEcCCCcE--EEEEec--CCCCeeEEEEcCCCCEEEEEcCCC-----e---ee-------------ecCCCEEEE
Q 046394          103 -QLRYQNVTMGEI--VGNFWT--GLGRTDVIRVNPFNGVVSLGHSGG-----T---ML-------------CHQGPVSAL  156 (378)
Q Consensus       103 -~i~iwd~~~~~~--~~~~~~--~~~~v~~~~~s~~~~~l~~~~~d~-----~---~~-------------~h~~~v~~~  156 (378)
                       .|++|++.+++.  ...+..  +...+..+.|||||++|+..+.++     .   +.             .+...+...
T Consensus       243 ~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~  322 (741)
T 1yr2_A          243 QTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDF  322 (741)
T ss_dssp             CEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEE
T ss_pred             CEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEE
Confidence             489999987752  233333  223588999999999888776543     1   11             122223333


Q ss_pred             EEecCCCEEEEEECC----CeEEEEEcCCce-eeeee----cCCceEEEEecCCCc----------cccCCC-CCceEEE
Q 046394          157 AFHPNGHLMATSGKD----CKIKIWDLRKYE-VLQTL----PGHAKTLDFSRKDSG----------DFSGSH-NYNRYMG  216 (378)
Q Consensus       157 ~~sp~g~~l~t~~~d----~~i~iwd~~~~~-~~~~~----~~~i~~~~~sp~g~~----------~~~~~~-~~~~~~~  216 (378)
                       ++|+|..|+..+.+    +.|.+||+.++. ....+    ...+..++|+ ++.+          .+|... .+.....
T Consensus       323 -~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~  400 (741)
T 1yr2_A          323 -VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGA  400 (741)
T ss_dssp             -EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEE
T ss_pred             -EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceee
Confidence             45889888887764    459999998752 33333    2335556665 2222          222111 1222333


Q ss_pred             eeccCCcceeeeEEcCCCCeEEE
Q 046394          217 YSMVKGYQIGKVSFRPYEDVLGI  239 (378)
Q Consensus       217 ~~~~~~~~v~~~~~sp~g~~l~~  239 (378)
                      +..+....|..+.++|++..|+.
T Consensus       401 l~~~~~~~v~~~~~s~d~~~l~~  423 (741)
T 1yr2_A          401 VSLPGIGSASGLSGRPGDRHAYL  423 (741)
T ss_dssp             CBCSSSCEEEEEECCBTCSCEEE
T ss_pred             ccCCCCeEEEEeecCCCCCEEEE
Confidence            33213456888899999876653

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.94  E-value=4.6e-07  Score=81.94  Aligned_cols=180  Identities=11%  Similarity=-0.019  Sum_probs=121.5

Q ss_pred             ccceeeeeecccceeeEEeecC-------CCCceEEEEcCCCCEEEEEeC--CCcEEEEeC-CCCeEEeeccCCCeeEEE
Q 046394           23 QEAIAREVDILSSRNQYDIMLP-------ELGPYTLDFTSSGRYMAAAGC--KGYPYFYNR-DGTELHCSKEHGEVLKLQ   92 (378)
Q Consensus        23 ~~~~i~~~d~~~~~~~~~l~~~-------~~~v~~~~~sp~g~~l~~~~~--dg~i~iwd~-~~~~~~~~~~~~~~~~l~   92 (378)
                      .++.|.++|..+++.+..+...       ...+..+.|+|||++|+++..  ++.|.+.|. ++..+..+..... ..+.
T Consensus       147 ~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~-~~~~  225 (426)
T 3c75_H          147 RTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC-YHIF  225 (426)
T ss_dssp             EEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE-EEEE
T ss_pred             CCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc-eeec
Confidence            3678999999999998887643       245778999999999999874  578999995 5555566553221 1111


Q ss_pred             E----EEEEEeCCCeEEEEEcCCCcEEEEE----ecCCCCe-eEEEEcCCCCEEEEEcCCCe---eee------------
Q 046394           93 F----LLASINKLGQLRYQNVTMGEIVGNF----WTGLGRT-DVIRVNPFNGVVSLGHSGGT---MLC------------  148 (378)
Q Consensus        93 ~----~l~s~~~d~~i~iwd~~~~~~~~~~----~~~~~~v-~~~~~s~~~~~l~~~~~d~~---~~~------------  148 (378)
                      -    .+++.+.||.+.+.++.+++.....    .....++ ..+.|++++..++..+..+.   +..            
T Consensus       226 p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~  305 (426)
T 3c75_H          226 PASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIE  305 (426)
T ss_dssp             EEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEE
T ss_pred             cCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeee
Confidence            1    5666778999999998666654321    1111221 23567888776655555443   110            


Q ss_pred             -----------cCCCEEEEEEecCCCEEEEEEC----------CCeEEEEEcCCceeeeee--cCCceEEEEecCCCc
Q 046394          149 -----------HQGPVSALAFHPNGHLMATSGK----------DCKIKIWDLRKYEVLQTL--PGHAKTLDFSRKDSG  203 (378)
Q Consensus       149 -----------h~~~v~~~~~sp~g~~l~t~~~----------d~~i~iwd~~~~~~~~~~--~~~i~~~~~sp~g~~  203 (378)
                                 .......++++|+++.+.+...          ++.|.++|+.+++.+.++  ......+.|+|||+.
T Consensus       306 ~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~~P~gia~spDg~~  383 (426)
T 3c75_H          306 ALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGHEIDSINVSQDAEP  383 (426)
T ss_dssp             SSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSC
T ss_pred             eccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCCCcCeEEEccCCCE
Confidence                       0111123789999887665532          357999999999999999  567999999999983

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=98.92  E-value=3.5e-08  Score=88.03  Aligned_cols=105  Identities=15%  Similarity=0.031  Sum_probs=75.6

Q ss_pred             CceEEEEcCCCCEEEEEeCCCcEEEEeCC------------CCeEEeeccCCCeeEEEE---EEEEEeCCCeEEEEEcCC
Q 046394           47 GPYTLDFTSSGRYMAAAGCKGYPYFYNRD------------GTELHCSKEHGEVLKLQF---LLASINKLGQLRYQNVTM  111 (378)
Q Consensus        47 ~v~~~~~sp~g~~l~~~~~dg~i~iwd~~------------~~~~~~~~~~~~~~~l~~---~l~s~~~d~~i~iwd~~~  111 (378)
                      .++.+++++...++++|+.++ +.+|+..            -....... +..++.++|   .|+++ .++.|++||+.+
T Consensus        39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~-lp~V~~l~fd~~~L~v~-~~~~l~v~dv~s  115 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKE-IPDVIFVCFHGDQVLVS-TRNALYSLDLEE  115 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEE-CTTEEEEEEETTEEEEE-ESSEEEEEESSS
T ss_pred             cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEee-CCCeeEEEECCCEEEEE-cCCcEEEEEchh
Confidence            689999999999999999885 6679821            11212222 333888999   77777 889999999987


Q ss_pred             CcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCeeeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCcee
Q 046394          112 GEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGTMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEV  184 (378)
Q Consensus       112 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~  184 (378)
                      ........                            .|...+.++.+.+.  .+++++.||.|.+||+.++..
T Consensus       116 l~~~~~~~----------------------------~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~  158 (388)
T 1xip_A          116 LSEFRTVT----------------------------SFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKST  158 (388)
T ss_dssp             TTCEEEEE----------------------------ECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCE
T ss_pred             hhccCccc----------------------------eeecceeeEEecCC--CEEEEECCCCEEEEEccCCcc
Confidence            65444333                            34455666666554  388899999999999987553

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.89  E-value=4.7e-10  Score=100.65  Aligned_cols=182  Identities=11%  Similarity=-0.033  Sum_probs=101.6

Q ss_pred             ceeeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeC-CCCeEEeeccCCC--e--e
Q 046394           15 VEKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNR-DGTELHCSKEHGE--V--L   89 (378)
Q Consensus        15 ~~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~--~--~   89 (378)
                      .+..|....++.+..||..+++.++.+..  ..+.+..+.+++..+++++.||.|+.||. +|..+..+..+..  .  .
T Consensus         9 ~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~s   86 (369)
T 2hz6_A            9 ETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQAS   86 (369)
T ss_dssp             TTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTC
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccC
Confidence            34566667789999999999999999887  56666666677877888889999999995 6777666544321  0  1


Q ss_pred             -EEEE--EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCeeee---cCCC-EE--------
Q 046394           90 -KLQF--LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGTMLC---HQGP-VS--------  154 (378)
Q Consensus        90 -~l~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~~~~---h~~~-v~--------  154 (378)
                       .+..  .+++++.|+.|..||..+|+.+..+..+.    ...++|++..+++++.++.+..   ..+. +.        
T Consensus        87 p~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~~~  162 (369)
T 2hz6_A           87 PCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFDYA  162 (369)
T ss_dssp             SCC-----CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSCCCEEEEEEEC
T ss_pred             ceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEeccccc
Confidence             1112  56777888999999999999888776543    2455678888888877766111   1111 11        


Q ss_pred             EEEEecCC---CEEEEEECCCeEEEEEcCCceeeeee--cCCce-EEEEecCCC
Q 046394          155 ALAFHPNG---HLMATSGKDCKIKIWDLRKYEVLQTL--PGHAK-TLDFSRKDS  202 (378)
Q Consensus       155 ~~~~sp~g---~~l~t~~~d~~i~iwd~~~~~~~~~~--~~~i~-~~~~sp~g~  202 (378)
                      ..+++++.   ..+++++.||.|..||..+|+.+..+  ..++. ...++++|.
T Consensus       163 ~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~pv~~~~~~~~dg~  216 (369)
T 2hz6_A          163 ASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYASPVVAFYVWQREGL  216 (369)
T ss_dssp             CBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECSSCEEEEEECTTSSC
T ss_pred             CccccCCccccceEEEECCCCEEEEEECCCCcEEEEecCCCceEEEEEecCCce
Confidence            12222221   45777889999999999999988777  34443 344556664

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.86  E-value=4.1e-07  Score=79.09  Aligned_cols=174  Identities=9%  Similarity=0.021  Sum_probs=113.5

Q ss_pred             ccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEeeccC-----CCeeEEEE----
Q 046394           23 QEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTELHCSKEH-----GEVLKLQF----   93 (378)
Q Consensus        23 ~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----~~~~~l~~----   93 (378)
                      .++.|..|+. ++. ...+..+...+.+++++++|+++++...++.|.+|+.++.........     ..++++.+    
T Consensus        65 ~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~i~~d~dG  142 (305)
T 3dr2_A           65 VGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDADGQAHLLVGRYAGKRLNSPNDLIVARDG  142 (305)
T ss_dssp             TTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEECEETTEECSCCCCEEECTTS
T ss_pred             CCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCCCCEEEEEeccCCCccCCCCCEEECCCC
Confidence            3567888887 343 344555667789999999999666655567899999776543222111     12366777    


Q ss_pred             -EEEE----EeC-------------CCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCC------Ce---e
Q 046394           94 -LLAS----INK-------------LGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSG------GT---M  146 (378)
Q Consensus        94 -~l~s----~~~-------------d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d------~~---~  146 (378)
                       +++|    +..             .+.|..||..+++.....  .....+.++|+|+++.|+++...      +.   +
T Consensus       143 ~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~  220 (305)
T 3dr2_A          143 AIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAF  220 (305)
T ss_dssp             CEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEE
T ss_pred             CEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEE
Confidence             5554    221             256788887667654333  33567889999999977776554      22   1


Q ss_pred             ee--------------cCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee--cCCceEEEEecCCCc
Q 046394          147 LC--------------HQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL--PGHAKTLDFSRKDSG  203 (378)
Q Consensus       147 ~~--------------h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~--~~~i~~~~~sp~g~~  203 (378)
                      ..              ..+....++++++|++.++. .+ .|.+||. .++.+..+  +..+.+++|+|++..
T Consensus       221 ~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~-~~-gv~~~~~-~g~~~~~~~~~~~~~~~~f~~d~~~  290 (305)
T 3dr2_A          221 AWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSSS-GT-GVCVFDS-DGQLLGHIPTPGTASNCTFDQAQQR  290 (305)
T ss_dssp             EEETTEEEEEEEEECCSSSCCCSEEECTTSCEEECC-SS-EEEEECT-TSCEEEEEECSSCCCEEEECTTSCE
T ss_pred             EecCCCccCCeEEEECCCCCCCeEEECCCCCEEEec-CC-cEEEECC-CCCEEEEEECCCceeEEEEeCCCCE
Confidence            10              11223468889999855544 44 4999998 57777766  556899999987754

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.83  E-value=1.8e-07  Score=91.05  Aligned_cols=194  Identities=9%  Similarity=-0.016  Sum_probs=110.3

Q ss_pred             CCCCceEEEEcCCCCEEEEEeC-----CCcEEEEeCCCCeEEeeccCCC-eeEEEE----EEEEEeCC------------
Q 046394           44 PELGPYTLDFTSSGRYMAAAGC-----KGYPYFYNRDGTELHCSKEHGE-VLKLQF----LLASINKL------------  101 (378)
Q Consensus        44 ~~~~v~~~~~sp~g~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~~~-~~~l~~----~l~s~~~d------------  101 (378)
                      |...+.+++|||||++||.+..     ...|++||+.+........+.. ...++|    .|+.++.+            
T Consensus       127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~WsDg~~l~y~~~~~~~~~~~~~~~~  206 (693)
T 3iuj_A          127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFSGISWLGNEGFFYSSYDKPDGSELSARTD  206 (693)
T ss_dssp             SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEESCCCEEETTTEEEEEESSCCC-------CC
T ss_pred             CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCceeccEEEeCCCEEEEEEecCcccccccccCC
Confidence            4456778999999998885432     2479999965433222211111 134556    45555544            


Q ss_pred             -CeEEEEEcCCCcE--EEEEe--c-CCCCeeEEEEcCCCCEEEEEcCCC----e---------------eeecCCCEEEE
Q 046394          102 -GQLRYQNVTMGEI--VGNFW--T-GLGRTDVIRVNPFNGVVSLGHSGG----T---------------MLCHQGPVSAL  156 (378)
Q Consensus       102 -~~i~iwd~~~~~~--~~~~~--~-~~~~v~~~~~s~~~~~l~~~~~d~----~---------------~~~h~~~v~~~  156 (378)
                       ..|++|++.+++.  ...+.  . +...+..+.|+|||++|+.....+    .               +..+.......
T Consensus       207 ~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~  286 (693)
T 3iuj_A          207 QHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSL  286 (693)
T ss_dssp             CCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEE
T ss_pred             CcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEE
Confidence             3499999987652  33332  2 334577899999999876544322    1               22233333343


Q ss_pred             EEecCCCEEEEEE-CC---CeEEEEEcCCcee--eeee--c-CCceEEEEecCCCcccc-------------CCCCCceE
Q 046394          157 AFHPNGHLMATSG-KD---CKIKIWDLRKYEV--LQTL--P-GHAKTLDFSRKDSGDFS-------------GSHNYNRY  214 (378)
Q Consensus       157 ~~sp~g~~l~t~~-~d---~~i~iwd~~~~~~--~~~~--~-~~i~~~~~sp~g~~~~~-------------~~~~~~~~  214 (378)
                       |+++|..|+..+ .+   +.|.++|+.++..  ...+  + ..+.  .|++++.+.++             +.... ..
T Consensus       287 -~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~-~~  362 (693)
T 3iuj_A          287 -VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGK-RV  362 (693)
T ss_dssp             -EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSC-EE
T ss_pred             -EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCC-ee
Confidence             667666655444 33   5799999988654  3444  2 2232  88998875332             22211 12


Q ss_pred             EEeeccCCcceeeeEEcCCCCeEEEec
Q 046394          215 MGYSMVKGYQIGKVSFRPYEDVLGIGH  241 (378)
Q Consensus       215 ~~~~~~~~~~v~~~~~sp~g~~l~~~~  241 (378)
                      .....+....+..+.++|++..|+...
T Consensus       363 ~~l~~p~~~~~~~~~~~~d~~~l~~~~  389 (693)
T 3iuj_A          363 REVALPGLGSVSGFNGKHDDPALYFGF  389 (693)
T ss_dssp             EEECCSSSSEEEECCCCTTCSCEEEEE
T ss_pred             EEeecCCCceEEeeecCCCCCEEEEEe
Confidence            222221234566777788887665543

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.79  E-value=2.6e-06  Score=71.70  Aligned_cols=150  Identities=10%  Similarity=-0.028  Sum_probs=98.6

Q ss_pred             eeeEEeecCC-CCceEEEEcCCCCEEEEEeC--CCcEEEEe-CCCCeEEeeccCCC--eeEEEE----EEEEEeCCCeEE
Q 046394           36 RNQYDIMLPE-LGPYTLDFTSSGRYMAAAGC--KGYPYFYN-RDGTELHCSKEHGE--VLKLQF----LLASINKLGQLR  105 (378)
Q Consensus        36 ~~~~~l~~~~-~~v~~~~~sp~g~~l~~~~~--dg~i~iwd-~~~~~~~~~~~~~~--~~~l~~----~l~s~~~d~~i~  105 (378)
                      +.+.++.... .....+.|+|++.+.++.+.  ++.|.++| .++..+..+.-...  ...+++    ++++.-.++.+.
T Consensus        10 ~vv~~~p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~v~   89 (266)
T 2iwa_A           10 EVLNEFPHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLKNIGF   89 (266)
T ss_dssp             EEEEEEECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTCSEEE
T ss_pred             eEEEEEECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecCCEEE
Confidence            4445554322 23579999998754444443  57899999 56777777653332  245555    556666789999


Q ss_pred             EEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe----------------eeec---CCCEEEEEEecCCCEEE
Q 046394          106 YQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT----------------MLCH---QGPVSALAFHPNGHLMA  166 (378)
Q Consensus       106 iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~----------------~~~h---~~~v~~~~~sp~g~~l~  166 (378)
                      ++|..+.+.+.++...  ......+++||..++++..++.                ...+   -..++.+.|. +|..++
T Consensus        90 viD~~t~~v~~~i~~g--~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyv  166 (266)
T 2iwa_A           90 IYDRRTLSNIKNFTHQ--MKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWA  166 (266)
T ss_dssp             EEETTTTEEEEEEECC--SSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEE
T ss_pred             EEECCCCcEEEEEECC--CCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEE
Confidence            9999999999998754  1123446668877777665444                1111   1135567777 776666


Q ss_pred             EEECCCeEEEEEcCCceeeeee
Q 046394          167 TSGKDCKIKIWDLRKYEVLQTL  188 (378)
Q Consensus       167 t~~~d~~i~iwd~~~~~~~~~~  188 (378)
                      ....++.|.+.|..+++.+..+
T Consensus       167 n~~~~~~V~vID~~tg~V~~~I  188 (266)
T 2iwa_A          167 NIWQTDCIARISAKDGTLLGWI  188 (266)
T ss_dssp             EETTSSEEEEEETTTCCEEEEE
T ss_pred             ecCCCCeEEEEECCCCcEEEEE
Confidence            6667889999999998887765

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.79  E-value=2.2e-06  Score=76.99  Aligned_cols=179  Identities=10%  Similarity=0.027  Sum_probs=118.9

Q ss_pred             cceeeeeecccc----eeeEEee-------cCCCCceEEEEcCCCCEEEEEeCC------CcEEEEe-CCCCeEEeeccC
Q 046394           24 EAIAREVDILSS----RNQYDIM-------LPELGPYTLDFTSSGRYMAAAGCK------GYPYFYN-RDGTELHCSKEH   85 (378)
Q Consensus        24 ~~~i~~~d~~~~----~~~~~l~-------~~~~~v~~~~~sp~g~~l~~~~~d------g~i~iwd-~~~~~~~~~~~~   85 (378)
                      ++.|.++|+.+.    +....+.       .....+..+..+|+| .++++..+      |.|.++| .+.+.+..+...
T Consensus       105 s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~  183 (462)
T 2ece_A          105 SSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEID  183 (462)
T ss_dssp             TCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSB
T ss_pred             CCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccC
Confidence            588999998755    4444442       111245678899999 66666555      7899999 456777777533


Q ss_pred             CC---e-eEEEE-----EEEEEe-------------------CCCeEEEEEcCCCcEEEEEecCC--CCeeEEEE--cCC
Q 046394           86 GE---V-LKLQF-----LLASIN-------------------KLGQLRYQNVTMGEIVGNFWTGL--GRTDVIRV--NPF  133 (378)
Q Consensus        86 ~~---~-~~l~~-----~l~s~~-------------------~d~~i~iwd~~~~~~~~~~~~~~--~~v~~~~~--s~~  133 (378)
                      ..   . ..+.|     .++++.                   .+.+|.+||+.+++.+.++....  .....+.|  +|+
T Consensus       184 ~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pd  263 (462)
T 2ece_A          184 RGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPT  263 (462)
T ss_dssp             CTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTT
T ss_pred             CCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCC
Confidence            22   2 44555     566653                   37899999999998888887642  23445655  999


Q ss_pred             CCEEEEEcC-----CCe-e------------------ee--c--------------CCCEEEEEEecCCCEEEEEE-CCC
Q 046394          134 NGVVSLGHS-----GGT-M------------------LC--H--------------QGPVSALAFHPNGHLMATSG-KDC  172 (378)
Q Consensus       134 ~~~l~~~~~-----d~~-~------------------~~--h--------------~~~v~~~~~sp~g~~l~t~~-~d~  172 (378)
                      ++++++++.     ... +                  ..  .              ......|.+||||++|.++. ..+
T Consensus       264 g~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d  343 (462)
T 2ece_A          264 KLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIG  343 (462)
T ss_dssp             CCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTT
T ss_pred             CCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCC
Confidence            998888776     332 1                  00  0              23467899999999987666 467


Q ss_pred             eEEEEEcCC---ceeeeee--cC---------------CceEEEEecCCCc
Q 046394          173 KIKIWDLRK---YEVLQTL--PG---------------HAKTLDFSRKDSG  203 (378)
Q Consensus       173 ~i~iwd~~~---~~~~~~~--~~---------------~i~~~~~sp~g~~  203 (378)
                      .|.+||+..   .+++..+  .+               ....+.+||||++
T Consensus       344 ~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~  394 (462)
T 2ece_A          344 EVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRR  394 (462)
T ss_dssp             EEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSE
T ss_pred             EEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCE
Confidence            999999863   3445554  21               2466777777765

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.78  E-value=5.2e-06  Score=72.83  Aligned_cols=173  Identities=13%  Similarity=0.103  Sum_probs=110.4

Q ss_pred             ccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEeeccC----C--CeeEEEE---
Q 046394           23 QEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTELHCSKEH----G--EVLKLQF---   93 (378)
Q Consensus        23 ~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~--~~~~l~~---   93 (378)
                      ..+.|..||..+++.. .+.. ...+.+++|+|+|+++++. .+ .|.+||..+..+..+...    .  .+.++.+   
T Consensus        69 ~~~~i~~~d~~~~~~~-~~~~-~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~  144 (326)
T 2ghs_A           69 LERELHELHLASGRKT-VHAL-PFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPS  144 (326)
T ss_dssp             GGTEEEEEETTTTEEE-EEEC-SSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTT
T ss_pred             CCCEEEEEECCCCcEE-EEEC-CCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCC
Confidence            3577888888776543 2332 4679999999999876654 44 499999654444333221    1  1367777   


Q ss_pred             --EEEEEeC------CCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEc-CCCe---ee-----e--------
Q 046394           94 --LLASINK------LGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGH-SGGT---ML-----C--------  148 (378)
Q Consensus        94 --~l~s~~~------d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~---~~-----~--------  148 (378)
                        ++++...      .+.|..++  +++... +.......+.++|+|+++.++++. .++.   +.     +        
T Consensus       145 G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~  221 (326)
T 2ghs_A          145 GALWIGTMGRKAETGAGSIYHVA--KGKVTK-LFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEV  221 (326)
T ss_dssp             SCEEEEEEETTCCTTCEEEEEEE--TTEEEE-EEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEE
T ss_pred             CCEEEEeCCCcCCCCceEEEEEe--CCcEEE-eeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceE
Confidence              4443322      24566666  555433 322334578899999998665543 2232   11     1        


Q ss_pred             ------cCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee--c-CCceEEEEe-cCCCc
Q 046394          149 ------HQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL--P-GHAKTLDFS-RKDSG  203 (378)
Q Consensus       149 ------h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~--~-~~i~~~~~s-p~g~~  203 (378)
                            ....+..++++++|+++++...++.|.+||. +++.+..+  + ..+++++|+ |++..
T Consensus       222 ~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~d~~~  285 (326)
T 2ghs_A          222 FIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASR  285 (326)
T ss_dssp             EEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCE
T ss_pred             EEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEecCCCCE
Confidence                  1123567889999998887777889999998 67776666  3 468999998 77654

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=98.77  E-value=8.4e-08  Score=93.48  Aligned_cols=157  Identities=7%  Similarity=-0.112  Sum_probs=104.4

Q ss_pred             eeeeecccce----eeEEeecCCCCceEEEEcCCCCEEEEEeCCC----cEEEEeCCCCeEEeeccCCCe-eEEEE----
Q 046394           27 AREVDILSSR----NQYDIMLPELGPYTLDFTSSGRYMAAAGCKG----YPYFYNRDGTELHCSKEHGEV-LKLQF----   93 (378)
Q Consensus        27 i~~~d~~~~~----~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~-~~l~~----   93 (378)
                      |++|++.+++    .++....|...+.++.|||||++|+.++.++    .|++|+..+.....+..+... ....|    
T Consensus       204 v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~g~  283 (695)
T 2bkl_A          204 IRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKYEVHAWKDR  283 (695)
T ss_dssp             EEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCEEEEEETTE
T ss_pred             EEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceEEEEecCCc
Confidence            9999998876    3344444556788999999999998887666    788887544445555544433 44444    


Q ss_pred             EEEEEe---CCCeEEEEEcCCCcE---EEEEecC-CCCeeEEEEcCCCCEEEEEcCCCe---------------eeec-C
Q 046394           94 LLASIN---KLGQLRYQNVTMGEI---VGNFWTG-LGRTDVIRVNPFNGVVSLGHSGGT---------------MLCH-Q  150 (378)
Q Consensus        94 ~l~s~~---~d~~i~iwd~~~~~~---~~~~~~~-~~~v~~~~~s~~~~~l~~~~~d~~---------------~~~h-~  150 (378)
                      +++++.   .++.|.+||+.++..   ...+..+ ...+..++|+ ++.++++...++.               +..+ .
T Consensus       284 l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~  362 (695)
T 2bkl_A          284 FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGV  362 (695)
T ss_dssp             EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSS
T ss_pred             EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCC
Confidence            344443   358899999987653   3333333 4457788888 6677777777765               1112 4


Q ss_pred             CCEEEEEEecCCCEEEEEE----CCCeEEEEEcCCcee
Q 046394          151 GPVSALAFHPNGHLMATSG----KDCKIKIWDLRKYEV  184 (378)
Q Consensus       151 ~~v~~~~~sp~g~~l~t~~----~d~~i~iwd~~~~~~  184 (378)
                      +.|..++++|++..++...    ..++|++||+.+++.
T Consensus       363 ~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~  400 (695)
T 2bkl_A          363 GAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS  400 (695)
T ss_dssp             SEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred             eEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence            4566778899887766332    346899999988764

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.77  E-value=6.2e-07  Score=79.68  Aligned_cols=84  Identities=10%  Similarity=-0.169  Sum_probs=63.7

Q ss_pred             eeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEe----------CCCcEEEEe-CCCCeEEeeccC--------C
Q 046394           26 IAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAG----------CKGYPYFYN-RDGTELHCSKEH--------G   86 (378)
Q Consensus        26 ~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~----------~dg~i~iwd-~~~~~~~~~~~~--------~   86 (378)
                      .+.++|..+++.+..+.....+  .+.++|||++++++.          .++.|.+|| .++..+..+..+        .
T Consensus        47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~  124 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGP  124 (368)
T ss_dssp             EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSC
T ss_pred             eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCC
Confidence            7889999999999999876454  899999999988886          367899999 567777777543        2


Q ss_pred             CeeEEEE-----EEEEEeC--CCeEEE--EEcCC
Q 046394           87 EVLKLQF-----LLASINK--LGQLRY--QNVTM  111 (378)
Q Consensus        87 ~~~~l~~-----~l~s~~~--d~~i~i--wd~~~  111 (378)
                      .+..+.|     +++.+..  +..|.+  +|+.+
T Consensus       125 ~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t  158 (368)
T 1mda_H          125 RVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD  158 (368)
T ss_dssp             CTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE
T ss_pred             CcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh
Confidence            3467777     4444432  467888  88866

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.76  E-value=2.3e-05  Score=70.10  Aligned_cols=234  Identities=16%  Similarity=0.135  Sum_probs=136.8

Q ss_pred             ceeeEEEeccceeeeeecccceeeEEeecCC---------CCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeecc
Q 046394           15 VEKTWRIKQEAIAREVDILSSRNQYDIMLPE---------LGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKE   84 (378)
Q Consensus        15 ~~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~---------~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~   84 (378)
                      .+..|....++.+..+|..+++.++......         ..+.+ ....++..+++++.++.|..+| .+|..+.....
T Consensus        53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~  131 (376)
T 3q7m_A           53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSG-GVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKV  131 (376)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEE-EEEEETTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred             CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCccccc-CceEeCCEEEEEcCCCEEEEEECCCCCEEEEEeC
Confidence            3456666678899999999999988877642         22222 2222456788888999999999 56888877665


Q ss_pred             CCCe-eEEEE---EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCe-----eEEEEcCCCCEEEEEcCCCe---eeecCCC
Q 046394           85 HGEV-LKLQF---LLASINKLGQLRYQNVTMGEIVGNFWTGLGRT-----DVIRVNPFNGVVSLGHSGGT---MLCHQGP  152 (378)
Q Consensus        85 ~~~~-~~l~~---~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v-----~~~~~s~~~~~l~~~~~d~~---~~~h~~~  152 (378)
                      .... .....   .++.++.++.|..+|..+|+.+..+.......     ......  +..+++++.++.   +....+.
T Consensus       132 ~~~~~~~p~~~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d~~tG~  209 (376)
T 3q7m_A          132 AGEALSRPVVSDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSAVLMEQGQ  209 (376)
T ss_dssp             SSCCCSCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEEEETTTCC
T ss_pred             CCceEcCCEEECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEEEECCCCc
Confidence            5444 33333   77788889999999999999888776432211     111222  345555555554   1111111


Q ss_pred             EE-E-----------------EEEec--CCCEEEEEECCCeEEEEEcCCceeeeee-cCCceEEEE--------ecCCCc
Q 046394          153 VS-A-----------------LAFHP--NGHLMATSGKDCKIKIWDLRKYEVLQTL-PGHAKTLDF--------SRKDSG  203 (378)
Q Consensus       153 v~-~-----------------~~~sp--~g~~l~t~~~d~~i~iwd~~~~~~~~~~-~~~i~~~~~--------sp~g~~  203 (378)
                      +. .                 +...|  .+..++.++.++.|..+|..+++.+... ......+..        +.+|..
T Consensus       210 ~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~l~~~~~~g~l  289 (376)
T 3q7m_A          210 MIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRELGSVNDFIVDGNRIYLVDQNDRV  289 (376)
T ss_dssp             EEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECCCCEEEEEEETTEEEEEETTCCE
T ss_pred             EEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccCCCCCCceEECCEEEEEcCCCeE
Confidence            10 0                 11122  2456777888999999999999887766 222222222        223444


Q ss_pred             cccCCCCCceEEEeeccCCcceeeeEEcCCCCeEEEecCCCeEEEEEcCC
Q 046394          204 DFSGSHNYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILIPGS  253 (378)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~~~s  253 (378)
                      ..++..++...-.........+.....  .+..|.+++.+|.+..+...+
T Consensus       290 ~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~t  337 (376)
T 3q7m_A          290 MALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINVED  337 (376)
T ss_dssp             EEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEETTT
T ss_pred             EEEECCCCcEEEeecccCCCcccCCEE--ECCEEEEEeCCCeEEEEECCC
Confidence            445555555443332101122222332  245677777777666665443

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.71  E-value=1.3e-06  Score=76.39  Aligned_cols=210  Identities=10%  Similarity=-0.007  Sum_probs=121.4

Q ss_pred             eeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEeeccCCCe-eEEEE----EEEEEeCC
Q 046394           27 AREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTELHCSKEHGEV-LKLQF----LLASINKL  101 (378)
Q Consensus        27 i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~l~~----~l~s~~~d  101 (378)
                      +..+|. +++....+..+........+.  +..|.+++.++.|..+|..+.....+..+... .++..    .+..++.+
T Consensus        80 l~~~d~-~g~~~~~~~~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~g~l~vgt~~  156 (330)
T 3hxj_A           80 VYAINP-DGTEKWRFDTKKAIVSDFTIF--EDILYVTSMDGHLYAINTDGTEKWRFKTKKAIYATPIVSEDGTIYVGSND  156 (330)
T ss_dssp             EEEECC-CGGGGGGSCC-----CCEEEE--TTEEEEECTTSEEEEECTTSCEEEEEECSSCCCSCCEECTTSCEEEECTT
T ss_pred             EEEECC-CCcEEEEEECCCCcccCceEE--CCEEEEEecCCEEEEEcCCCCEEEEEcCCCceeeeeEEcCCCEEEEEcCC
Confidence            666665 555444444332222333333  44677888888999999767776666554443 44444    56667788


Q ss_pred             CeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe------------eeecCCCEEEEEEecCCCEEEEEE
Q 046394          102 GQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT------------MLCHQGPVSALAFHPNGHLMATSG  169 (378)
Q Consensus       102 ~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~------------~~~h~~~v~~~~~sp~g~~l~t~~  169 (378)
                      +.|..+|.. ++.+..+......+.++.+.+++.+++.+  .+.            .......+.++.+.++|. |..++
T Consensus       157 ~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~t--~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t  232 (330)
T 3hxj_A          157 NYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYFGS--DKVYAINPDGTEKWNFYAGYWTVTRPAISEDGT-IYVTS  232 (330)
T ss_dssp             SEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEEES--SSEEEECTTSCEEEEECCSSCCCSCCEECTTSC-EEEEE
T ss_pred             CEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEEEe--CEEEEECCCCcEEEEEccCCcceeceEECCCCe-EEEEc
Confidence            999999998 88877777666667778887887755544  333            111224466777888775 55566


Q ss_pred             CCCeEEEEEcCCceeeeee--c-CCceEEEEecCCCc---------cccCCCCCceEEEeeccCCcceeeeEEcCCCCeE
Q 046394          170 KDCKIKIWDLRKYEVLQTL--P-GHAKTLDFSRKDSG---------DFSGSHNYNRYMGYSMVKGYQIGKVSFRPYEDVL  237 (378)
Q Consensus       170 ~d~~i~iwd~~~~~~~~~~--~-~~i~~~~~sp~g~~---------~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l  237 (378)
                      .++.|..+|. ++..+..+  . ..+.++.+.++|..         ..++. +...+..+.. ....+.++..+++|. |
T Consensus       233 ~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~ggl~~~d~-~g~~~~~~~~-~~~~~~~~~~d~~g~-l  308 (330)
T 3hxj_A          233 LDGHLYAINP-DGTEKWRFKTGKRIESSPVIGNTDTIYFGSYDGHLYAINP-DGTEKWNFET-GSWIIATPVIDENGT-I  308 (330)
T ss_dssp             TTTEEEEECT-TSCEEEEEECSSCCCSCCEECTTSCEEEECTTCEEEEECT-TSCEEEEEEC-SSCCCSCCEECTTCC-E
T ss_pred             CCCeEEEECC-CCCEeEEeeCCCCccccceEcCCCeEEEecCCCCEEEECC-CCcEEEEEEc-CCccccceEEcCCCE-E
Confidence            6788888874 56665555  2 33445555555543         22222 2333333332 334455666656654 3


Q ss_pred             EEecCCCeEE
Q 046394          238 GIGHSMGVSG  247 (378)
Q Consensus       238 ~~~~~~g~~~  247 (378)
                      .+++.+|.+.
T Consensus       309 ~~gt~~G~~~  318 (330)
T 3hxj_A          309 YFGTRNGKFY  318 (330)
T ss_dssp             EEECTTSCEE
T ss_pred             EEEcCCCeEE
Confidence            3344555433

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.70  E-value=4.6e-06  Score=80.83  Aligned_cols=171  Identities=11%  Similarity=0.038  Sum_probs=113.4

Q ss_pred             ceeeEEEeccceeeeeecccceeeEEeecCCCC----------c-eEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEee
Q 046394           15 VEKTWRIKQEAIAREVDILSSRNQYDIMLPELG----------P-YTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCS   82 (378)
Q Consensus        15 ~~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~----------v-~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~   82 (378)
                      .+..|....++.|..+|..+++.++.+..+...          + .++++  .+..|++++.|+.|+.+| .+|+.+..+
T Consensus        70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W~~  147 (689)
T 1yiq_A           70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAWSV  147 (689)
T ss_dssp             TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEeeee
Confidence            345666667889999999999999988764321          0 11222  356788899999999999 578888776


Q ss_pred             ccC-C-----Ce--eEEEE--EEEEEe------CCCeEEEEEcCCCcEEEEEecCC------------------------
Q 046394           83 KEH-G-----EV--LKLQF--LLASIN------KLGQLRYQNVTMGEIVGNFWTGL------------------------  122 (378)
Q Consensus        83 ~~~-~-----~~--~~l~~--~l~s~~------~d~~i~iwd~~~~~~~~~~~~~~------------------------  122 (378)
                      ... .     ..  ..+..  .++.++      .++.|..||..+|+.+..+....                        
T Consensus       148 ~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w  227 (689)
T 1yiq_A          148 DTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAY  227 (689)
T ss_dssp             ECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTH
T ss_pred             cCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCcee
Confidence            543 1     11  12223  444443      36899999999999988775311                        


Q ss_pred             -------CCeeEEEEcCCCCEEEEEcCCC--------------------e-------------eee--cC-------CCE
Q 046394          123 -------GRTDVIRVNPFNGVVSLGHSGG--------------------T-------------MLC--HQ-------GPV  153 (378)
Q Consensus       123 -------~~v~~~~~s~~~~~l~~~~~d~--------------------~-------------~~~--h~-------~~v  153 (378)
                             .....++++|++..+++++.++                    .             +..  |.       .++
T Consensus       228 ~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~  307 (689)
T 1yiq_A          228 VEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHM  307 (689)
T ss_dssp             HHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCE
T ss_pred             eecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCc
Confidence                   0112578899888888887664                    1             111  11       122


Q ss_pred             EEEEEecCCC---EEEEEECCCeEEEEEcCCceeeee
Q 046394          154 SALAFHPNGH---LMATSGKDCKIKIWDLRKYEVLQT  187 (378)
Q Consensus       154 ~~~~~sp~g~---~l~t~~~d~~i~iwd~~~~~~~~~  187 (378)
                      .......+|.   .++.++.+|.++++|..+|+++..
T Consensus       308 ~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~  344 (689)
T 1yiq_A          308 ILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSA  344 (689)
T ss_dssp             EEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEE
T ss_pred             EEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEecc
Confidence            2223333554   688889999999999999998743

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.69  E-value=2.3e-06  Score=79.49  Aligned_cols=233  Identities=8%  Similarity=-0.019  Sum_probs=150.2

Q ss_pred             CeeecCCceeeEEEec---cceeeeeecccceeeEEeec---------------------------------C------C
Q 046394            8 GYLEAEGVEKTWRIKQ---EAIAREVDILSSRNQYDIML---------------------------------P------E   45 (378)
Q Consensus         8 ~~l~~~~~~~~~~~~~---~~~i~~~d~~~~~~~~~l~~---------------------------------~------~   45 (378)
                      .++.++..|..|.+|+   .+.++++-+-+++.+..+..                                 +      .
T Consensus         5 ~~~~~g~~d~~~~f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~   84 (595)
T 1fwx_A            5 GSVAPGQLDDYYGFWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDN   84 (595)
T ss_dssp             CCCCTTCCCSEEEEECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCC
T ss_pred             ccCCCCCcccEEEEeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceeccc
Confidence            3556666787777765   57889888888776544321                                 0      0


Q ss_pred             CCceEEEEcC-----CCCEEEEEeC-CCcEEEEeCCC-CeEE--eeccCCCeeEEEE-------EEEEE-----------
Q 046394           46 LGPYTLDFTS-----SGRYMAAAGC-KGYPYFYNRDG-TELH--CSKEHGEVLKLQF-------LLASI-----------   98 (378)
Q Consensus        46 ~~v~~~~~sp-----~g~~l~~~~~-dg~i~iwd~~~-~~~~--~~~~~~~~~~l~~-------~l~s~-----------   98 (378)
                      +.......|.     ||++|++... ++.|.+.|... +...  .+....++..+++       +++++           
T Consensus        85 gd~hh~~~s~t~g~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg  164 (595)
T 1fwx_A           85 GDLHHVHMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDG  164 (595)
T ss_dssp             CCBCCEEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSS
T ss_pred             CCCCccccCCCCCCcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCC
Confidence            1122345554     7888887766 55699999655 4444  3333344555554       44444           


Q ss_pred             -------eCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe--------------------------
Q 046394           99 -------NKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT--------------------------  145 (378)
Q Consensus        99 -------~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~--------------------------  145 (378)
                             -.++.+.++|..+.+.+.++.... ....++++|+|+++++++.+..                          
T Consensus       165 ~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~  243 (595)
T 1fwx_A          165 TNMEDVANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEK  243 (595)
T ss_dssp             SSTTCGGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHH
T ss_pred             cccccccccCceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeE
Confidence                   235689999999999888887543 5678899999999999987652                          


Q ss_pred             ---------------eeecC--C-----------CEEEEEEecCCCEEEEEE-CCCeEEEEEcCCce------------e
Q 046394          146 ---------------MLCHQ--G-----------PVSALAFHPNGHLMATSG-KDCKIKIWDLRKYE------------V  184 (378)
Q Consensus       146 ---------------~~~h~--~-----------~v~~~~~sp~g~~l~t~~-~d~~i~iwd~~~~~------------~  184 (378)
                                     +....  +           ...++.++|||+++++++ .+.+|.++|+.+.+            .
T Consensus       244 ~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v  323 (595)
T 1fwx_A          244 AIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAV  323 (595)
T ss_dssp             HHHHTCSEEETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGE
T ss_pred             eccCCCeeEECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccce
Confidence                           11111  1           234688999999876655 67899999999753            2


Q ss_pred             eeee--cCCceEEEEecCCCc----------cccCCCC----------CceEEEeeccCCcc-----eeeeEEcCCCCeE
Q 046394          185 LQTL--PGHAKTLDFSRKDSG----------DFSGSHN----------YNRYMGYSMVKGYQ-----IGKVSFRPYEDVL  237 (378)
Q Consensus       185 ~~~~--~~~i~~~~~sp~g~~----------~~~~~~~----------~~~~~~~~~~~~~~-----v~~~~~sp~g~~l  237 (378)
                      ...+  ......++|+|+|..          ..|+...          ...+..... |.++     -..+.++|||++|
T Consensus       324 ~~~v~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV-~yqpGh~~~~~g~t~~~DGk~l  402 (595)
T 1fwx_A          324 VAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDV-HYQPGHLKTVMGETLDATNDWL  402 (595)
T ss_dssp             EECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEEC-SSCEEEEEETTTTSTTCCSSEE
T ss_pred             EEEcCCCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeec-ccccccceeccceEeCCCCCEE
Confidence            3344  567899999999931          2333322          334444443 3332     1344678999998


Q ss_pred             EEecC
Q 046394          238 GIGHS  242 (378)
Q Consensus       238 ~~~~~  242 (378)
                      +++..
T Consensus       403 ~~~Nk  407 (595)
T 1fwx_A          403 VCLSK  407 (595)
T ss_dssp             EEEES
T ss_pred             EEcCC
Confidence            87654

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.65  E-value=2.5e-06  Score=82.58  Aligned_cols=97  Identities=10%  Similarity=0.028  Sum_probs=71.1

Q ss_pred             cceeeeeecccceeeEEeecCCCC--------------------------------ceEEEEcCCCCEEEEEeCCC----
Q 046394           24 EAIAREVDILSSRNQYDIMLPELG--------------------------------PYTLDFTSSGRYMAAAGCKG----   67 (378)
Q Consensus        24 ~~~i~~~d~~~~~~~~~l~~~~~~--------------------------------v~~~~~sp~g~~l~~~~~dg----   67 (378)
                      ++.|..+|..+++.++.+......                                ...++++|++..|++++.++    
T Consensus       189 ~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~  268 (677)
T 1kb0_A          189 RGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWS  268 (677)
T ss_dssp             BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSC
T ss_pred             CCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCcccc
Confidence            688999999999999887653221                                13578899998888887664    


Q ss_pred             ---------------cEEEEe-CCCCeEEeecc--CC--------CeeEEE--E------EEEEEeCCCeEEEEEcCCCc
Q 046394           68 ---------------YPYFYN-RDGTELHCSKE--HG--------EVLKLQ--F------LLASINKLGQLRYQNVTMGE  113 (378)
Q Consensus        68 ---------------~i~iwd-~~~~~~~~~~~--~~--------~~~~l~--~------~l~s~~~d~~i~iwd~~~~~  113 (378)
                                     .|..+| .+|..+..+..  |.        .+..+.  .      .++.++.+|.|+++|..+|+
T Consensus       269 ~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~  348 (677)
T 1kb0_A          269 HKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGK  348 (677)
T ss_dssp             HHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred             CCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCC
Confidence                           499999 56888777653  21        111111  1      57888899999999999999


Q ss_pred             EEEEEec
Q 046394          114 IVGNFWT  120 (378)
Q Consensus       114 ~~~~~~~  120 (378)
                      .+..+..
T Consensus       349 ~l~~~~~  355 (677)
T 1kb0_A          349 FISAKNF  355 (677)
T ss_dssp             EEEEEES
T ss_pred             Eeccccc
Confidence            9877653

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.65  E-value=9.4e-06  Score=71.73  Aligned_cols=182  Identities=10%  Similarity=0.009  Sum_probs=101.7

Q ss_pred             CCceEEEEcCCCCEEEEEeC--CCcEEEEeC-CCCeEEeecc-------C-CCeeEEEE-----EEEEEeC-----CCeE
Q 046394           46 LGPYTLDFTSSGRYMAAAGC--KGYPYFYNR-DGTELHCSKE-------H-GEVLKLQF-----LLASINK-----LGQL  104 (378)
Q Consensus        46 ~~v~~~~~sp~g~~l~~~~~--dg~i~iwd~-~~~~~~~~~~-------~-~~~~~l~~-----~l~s~~~-----d~~i  104 (378)
                      ..+..++++|+|+.+++...  ++.+.||.+ ++ .+..+..       + ..+..++|     ++++-..     +..|
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g-~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i   95 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQD-GLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL   95 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETT-EEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCC-CeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence            57899999999998888642  342444443 44 3333321       1 13477888     3333322     5789


Q ss_pred             EEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCeeeecCCCEEEEEEecCC-CEEEEEE---CCCeEEEEEcC
Q 046394          105 RYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGTMLCHQGPVSALAFHPNG-HLMATSG---KDCKIKIWDLR  180 (378)
Q Consensus       105 ~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~~~~h~~~v~~~~~sp~g-~~l~t~~---~d~~i~iwd~~  180 (378)
                      .+||+.+++.+..+......                      ..+...+..++++|++ ..+++.+   .++.|.+||+.
T Consensus        96 ~~~d~~tg~~~~~~~~~~~~----------------------~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~  153 (343)
T 2qe8_A           96 VAWDTLNNQLSRVIYLPPPI----------------------TLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQ  153 (343)
T ss_dssp             EEEETTTTEEEEEEECCTTT----------------------SCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETT
T ss_pred             EEEECCCCeEEEEEECChhh----------------------cccccccceEEEecCCCEEEEEcCccCCCCeEEEEECC
Confidence            99999988877766532110                      0122334566777643 3334444   46677777776


Q ss_pred             Cceeeeee-c-------------------------------CCceEEEEecCCCccccCCCCCceEEEee----------
Q 046394          181 KYEVLQTL-P-------------------------------GHAKTLDFSRKDSGDFSGSHNYNRYMGYS----------  218 (378)
Q Consensus       181 ~~~~~~~~-~-------------------------------~~i~~~~~sp~g~~~~~~~~~~~~~~~~~----------  218 (378)
                      +++....+ .                               ..++.++|+|||....+.......+..+.          
T Consensus       154 ~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~  233 (343)
T 2qe8_A          154 TGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLT  233 (343)
T ss_dssp             TCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCC
T ss_pred             CCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCC
Confidence            65543332 0                               12477899999875333221221121111          


Q ss_pred             -----------ccCCcceeeeEEcCCCCeEEEecCCCeEEEEEc
Q 046394          219 -----------MVKGYQIGKVSFRPYEDVLGIGHSMGVSGILIP  251 (378)
Q Consensus       219 -----------~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~~  251 (378)
                                 + +......++++++|.++++...++.+..|.+
T Consensus       234 ~~~~~~~~~~~g-~~g~pdgia~d~~G~l~va~~~~~~V~~~d~  276 (343)
T 2qe8_A          234 DAELGSKIERYS-EKPICDGISIDKDHNIYVGDLAHSAIGVITS  276 (343)
T ss_dssp             HHHHHTTCEEEE-ECCSCSCEEECTTCCEEEEEGGGTEEEEEET
T ss_pred             hhhhhcceEecc-cCCCCceEEECCCCCEEEEccCCCeEEEEEC
Confidence                       1 1223556888888877666666665555554

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.65  E-value=6.5e-06  Score=79.79  Aligned_cols=224  Identities=15%  Similarity=0.144  Sum_probs=137.3

Q ss_pred             eeeEEEeccceeeeeecccceeeEEeecC--CCCceEEEEcC---CCCEEEEEe------CCCcEEEEe-CCCCeEEeec
Q 046394           16 EKTWRIKQEAIAREVDILSSRNQYDIMLP--ELGPYTLDFTS---SGRYMAAAG------CKGYPYFYN-RDGTELHCSK   83 (378)
Q Consensus        16 ~~~~~~~~~~~i~~~d~~~~~~~~~l~~~--~~~v~~~~~sp---~g~~l~~~~------~dg~i~iwd-~~~~~~~~~~   83 (378)
                      ++.|....++.+..+|..+++.++.+...  ......+..+|   ++ .+++++      .+|.|+.|| .+|+.+..+.
T Consensus       122 g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~  200 (689)
T 1yiq_A          122 GKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRFY  200 (689)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred             CEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEec
Confidence            45666677899999999999999888763  11112222223   44 444443      368999999 6788887664


Q ss_pred             cCC-------------------------------Ce-eEEEE-----EEEEEeCCC-------------------eEEEE
Q 046394           84 EHG-------------------------------EV-LKLQF-----LLASINKLG-------------------QLRYQ  107 (378)
Q Consensus        84 ~~~-------------------------------~~-~~l~~-----~l~s~~~d~-------------------~i~iw  107 (378)
                      ...                               .. ..+.+     +++.+..++                   .|..|
T Consensus       201 ~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~Al  280 (689)
T 1yiq_A          201 TVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAV  280 (689)
T ss_dssp             SSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEE
T ss_pred             ccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEE
Confidence            210                               11 24556     667776665                   49999


Q ss_pred             EcCCCcEEEEEecCCC---------CeeEEEEcCCCC---EEEEEcCCCe---eeecCCC--------------------
Q 046394          108 NVTMGEIVGNFWTGLG---------RTDVIRVNPFNG---VVSLGHSGGT---MLCHQGP--------------------  152 (378)
Q Consensus       108 d~~~~~~~~~~~~~~~---------~v~~~~~s~~~~---~l~~~~~d~~---~~~h~~~--------------------  152 (378)
                      |..+|+.+..+.....         .+.......+|.   .++.++.+|.   +....+.                    
T Consensus       281 D~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~  360 (689)
T 1yiq_A          281 NADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKT  360 (689)
T ss_dssp             ETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTT
T ss_pred             EccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccC
Confidence            9999999988764211         111122222443   5556665555   1111111                    


Q ss_pred             ------------------------------EEEEEEecCCCEEEEEEC--------------------------------
Q 046394          153 ------------------------------VSALAFHPNGHLMATSGK--------------------------------  170 (378)
Q Consensus       153 ------------------------------v~~~~~sp~g~~l~t~~~--------------------------------  170 (378)
                                                    ...++|+|+..++++.+.                                
T Consensus       361 ~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p  440 (689)
T 1yiq_A          361 GRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMP  440 (689)
T ss_dssp             TEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCC
T ss_pred             CCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccC
Confidence                                          012688998777776532                                


Q ss_pred             -------------CCeEEEEEcCCceeeeee--cCCceE--------EEE--ecCCCccccCCCCCceEEEeeccCCcce
Q 046394          171 -------------DCKIKIWDLRKYEVLQTL--PGHAKT--------LDF--SRKDSGDFSGSHNYNRYMGYSMVKGYQI  225 (378)
Q Consensus       171 -------------d~~i~iwd~~~~~~~~~~--~~~i~~--------~~~--sp~g~~~~~~~~~~~~~~~~~~~~~~~v  225 (378)
                                   +|.|..||+.+++.+..+  +.+...        +.|  +.||.+.+++..+++.+-.+...++...
T Consensus       441 ~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~  520 (689)
T 1yiq_A          441 EGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMA  520 (689)
T ss_dssp             SSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCS
T ss_pred             cccccCCCCCCCcceeEEEEECCCCCeEeEccCCCCccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCccc
Confidence                         378999999999998777  332222        222  3456668888888888877765333334


Q ss_pred             eeeEEcCCCC-eEEEe
Q 046394          226 GKVSFRPYED-VLGIG  240 (378)
Q Consensus       226 ~~~~~sp~g~-~l~~~  240 (378)
                      .-+.|..+|+ |+++.
T Consensus       521 ~p~ty~~~G~qyv~~~  536 (689)
T 1yiq_A          521 APVTYSVDGEQYVTFM  536 (689)
T ss_dssp             CCEEEEETTEEEEEEE
T ss_pred             CceEEEECCEEEEEEE
Confidence            5577888986 44433

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.63  E-value=2.7e-07  Score=80.94  Aligned_cols=179  Identities=13%  Similarity=0.029  Sum_probs=116.3

Q ss_pred             ceeeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEeeccCCCe-eEEEE
Q 046394           15 VEKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTELHCSKEHGEV-LKLQF   93 (378)
Q Consensus        15 ~~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~l~~   93 (378)
                      ....+....++.+..|| .+++.......+...+.++...++|. |.+++.+  |..+|.++..+..+...... ....+
T Consensus        30 ~g~l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~~g~~~~~~~~~~~~~~~~~~  105 (330)
T 3hxj_A           30 NGTIYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGT-IYFGSDK--VYAINPDGTEKWRFDTKKAIVSDFTI  105 (330)
T ss_dssp             TSCEECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTE-ECCSSCE--EEEECCCGGGGGGSCC-----CCEEE
T ss_pred             CCeEEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCc-EEEecCc--EEEECCCCcEEEEEECCCCcccCceE
Confidence            34455555577788899 88887776665544556777777775 4555444  88999877665544433333 33333


Q ss_pred             ---EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe-------------eeecCCCEEEEE
Q 046394           94 ---LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT-------------MLCHQGPVSALA  157 (378)
Q Consensus        94 ---~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~-------------~~~h~~~v~~~~  157 (378)
                         .+..++.++.|..+|.. ++....+......+.++...+++.+++ ++.++.             +......+.++.
T Consensus       106 ~~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~l~v-gt~~~~l~~~d~~g~~~~~~~~~~~~~~~~~  183 (330)
T 3hxj_A          106 FEDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGTIYV-GSNDNYLYAINPDGTEKWRFKTNDAITSAAS  183 (330)
T ss_dssp             ETTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSCEEE-ECTTSEEEEECTTSCEEEEEECSSCCCSCCE
T ss_pred             ECCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCEEEE-EcCCCEEEEECCCCCEeEEEecCCCceeeeE
Confidence               67778888999999998 887777766656667777887777544 444443             111233455566


Q ss_pred             EecCCCEEEEEECCCeEEEEEcCCceeeeee---cCCceEEEEecCCCc
Q 046394          158 FHPNGHLMATSGKDCKIKIWDLRKYEVLQTL---PGHAKTLDFSRKDSG  203 (378)
Q Consensus       158 ~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~~sp~g~~  203 (378)
                      +.++|.+++.+   +.|..|| .+++.+..+   ...+.++...++|..
T Consensus       184 ~d~~g~l~v~t---~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l  228 (330)
T 3hxj_A          184 IGKDGTIYFGS---DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTI  228 (330)
T ss_dssp             ECTTCCEEEES---SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCE
T ss_pred             EcCCCEEEEEe---CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeE
Confidence            66777755444   7799999 777776666   345778888887754

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.63  E-value=2.5e-06  Score=75.84  Aligned_cols=53  Identities=11%  Similarity=-0.058  Sum_probs=43.2

Q ss_pred             cceeeeeecccceeeEEeecC-------CCCceEEEEcCCCCEEEEEeC--CCcEEE--EeCCC
Q 046394           24 EAIAREVDILSSRNQYDIMLP-------ELGPYTLDFTSSGRYMAAAGC--KGYPYF--YNRDG   76 (378)
Q Consensus        24 ~~~i~~~d~~~~~~~~~l~~~-------~~~v~~~~~sp~g~~l~~~~~--dg~i~i--wd~~~   76 (378)
                      ++.|.+||+.+++.+..+..+       ...+..+++||||++|+++..  +..|.+  +|...
T Consensus        95 ~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t  158 (368)
T 1mda_H           95 TDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD  158 (368)
T ss_dssp             EEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE
T ss_pred             CCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh
Confidence            688999999999999998764       135789999999999998875  356888  88543

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=98.62  E-value=1.1e-06  Score=86.10  Aligned_cols=158  Identities=8%  Similarity=-0.018  Sum_probs=101.2

Q ss_pred             eeeeeeccccee----eEEeecCCCCceEEEEcCCCCEEEEEeCCC-----cEEEEeCCCC--e-EEeeccCCCe-eEEE
Q 046394           26 IAREVDILSSRN----QYDIMLPELGPYTLDFTSSGRYMAAAGCKG-----YPYFYNRDGT--E-LHCSKEHGEV-LKLQ   92 (378)
Q Consensus        26 ~i~~~d~~~~~~----~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg-----~i~iwd~~~~--~-~~~~~~~~~~-~~l~   92 (378)
                      .|.+|++.++..    ++....+...+.++.|||||++|+..+.++     .|++||..+.  . ...+..+... ....
T Consensus       244 ~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~  323 (741)
T 1yr2_A          244 TVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV  323 (741)
T ss_dssp             EEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE
T ss_pred             EEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE
Confidence            478889877652    222233333578999999999988877544     7999996443  3 4555554433 3333


Q ss_pred             E----EEEEEeC----CCeEEEEEcCCC--cEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe---------------ee
Q 046394           93 F----LLASINK----LGQLRYQNVTMG--EIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT---------------ML  147 (378)
Q Consensus        93 ~----~l~s~~~----d~~i~iwd~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~---------------~~  147 (378)
                      +    .|+..+.    ++.|.+||+.++  .....+..+...+..+.++ ++.++++...++.               +.
T Consensus       324 ~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~  402 (741)
T 1yr2_A          324 DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVS  402 (741)
T ss_dssp             EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECB
T ss_pred             eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeecc
Confidence            3    4444443    456999999874  3444444444556677777 5567777766665               11


Q ss_pred             e-cCCCEEEEEEecCCCEEE-EEE---CCCeEEEEEcCCcee
Q 046394          148 C-HQGPVSALAFHPNGHLMA-TSG---KDCKIKIWDLRKYEV  184 (378)
Q Consensus       148 ~-h~~~v~~~~~sp~g~~l~-t~~---~d~~i~iwd~~~~~~  184 (378)
                      . +.+.|..++++|++..|+ +.+   ..++|++||+.+++.
T Consensus       403 ~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~  444 (741)
T 1yr2_A          403 LPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKT  444 (741)
T ss_dssp             CSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred             CCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence            1 245678889999887655 322   346899999988763

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.60  E-value=1.4e-05  Score=66.51  Aligned_cols=141  Identities=13%  Similarity=0.105  Sum_probs=97.4

Q ss_pred             eccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEE-EEeCCCcEEEEe-CCCCeEEeeccCCCeeEEEE---EEE
Q 046394           22 KQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMA-AAGCKGYPYFYN-RDGTELHCSKEHGEVLKLQF---LLA   96 (378)
Q Consensus        22 ~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~-~~~~dg~i~iwd-~~~~~~~~~~~~~~~~~l~~---~l~   96 (378)
                      ..++.|+++|+.+++.+..+ .. ...+.....+++..|+ ....++.+.+|| .+...+.++........+++   .|+
T Consensus        72 G~~g~v~~iD~~Tgkv~~~~-l~-~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~eGwGLt~Dg~~L~  149 (268)
T 3nok_A           72 GHQGTLRQLSLESAQPVWME-RL-GNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTTRYSGEGWGLCYWNGKLV  149 (268)
T ss_dssp             TTTTEEEECCSSCSSCSEEE-EC-TTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEEECSSCCCCEEEETTEEE
T ss_pred             CCCCEEEEEECCCCcEEeEE-CC-CCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEEeCCCceeEEecCCCEEE
Confidence            34567999999999988887 43 3444433333444444 344588999999 56677777775444477777   555


Q ss_pred             EEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCeeeecCCCEEEEEEecCCCEEEEEECCCeEEE
Q 046394           97 SINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGTMLCHQGPVSALAFHPNGHLMATSGKDCKIKI  176 (378)
Q Consensus        97 s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~i  176 (378)
                      .+..++.|.++|..+.+.+..+......                       ..-..++.+.|. +|..++..-.++.|.+
T Consensus       150 vSdGs~~l~~iDp~T~~v~~~I~V~~~g-----------------------~~v~~lNeLe~~-dG~lyanvw~s~~I~v  205 (268)
T 3nok_A          150 RSDGGTMLTFHEPDGFALVGAVQVKLRG-----------------------QPVELINELECA-NGVIYANIWHSSDVLE  205 (268)
T ss_dssp             EECSSSEEEEECTTTCCEEEEEECEETT-----------------------EECCCEEEEEEE-TTEEEEEETTCSEEEE
T ss_pred             EECCCCEEEEEcCCCCeEEEEEEeCCCC-----------------------cccccccccEEe-CCEEEEEECCCCeEEE
Confidence            5556889999999999988877632110                       112244667776 7766666667889999


Q ss_pred             EEcCCceeeeee
Q 046394          177 WDLRKYEVLQTL  188 (378)
Q Consensus       177 wd~~~~~~~~~~  188 (378)
                      .|..+++.+..+
T Consensus       206 IDp~TG~V~~~I  217 (268)
T 3nok_A          206 IDPATGTVVGVI  217 (268)
T ss_dssp             ECTTTCBEEEEE
T ss_pred             EeCCCCcEEEEE
Confidence            999999988876

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.60  E-value=0.00011  Score=62.21  Aligned_cols=177  Identities=11%  Similarity=-0.015  Sum_probs=107.2

Q ss_pred             cceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEe-CCCcEEEEeCCCCeEEeecc--CCCeeEEEE-----E-
Q 046394           24 EAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAG-CKGYPYFYNRDGTELHCSKE--HGEVLKLQF-----L-   94 (378)
Q Consensus        24 ~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~-~dg~i~iwd~~~~~~~~~~~--~~~~~~l~~-----~-   94 (378)
                      .+.|..+++........+...-..+.+++++|++..|+.+. ..+.|.+++.++.....+..  ...+..+++     . 
T Consensus        57 ~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~l  136 (267)
T 1npe_A           57 EPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNL  136 (267)
T ss_dssp             TTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEE
T ss_pred             CCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEE
Confidence            45677777765543322322235788999999776666554 46789999987754433322  234577777     3 


Q ss_pred             EEEEeC--CCeEEEEEcCCCcEEEEEe-cCCCCeeEEEEcCCCCEEEEEcCC-Ce-------------eeecCCCEEEEE
Q 046394           95 LASINK--LGQLRYQNVTMGEIVGNFW-TGLGRTDVIRVNPFNGVVSLGHSG-GT-------------MLCHQGPVSALA  157 (378)
Q Consensus        95 l~s~~~--d~~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~d-~~-------------~~~h~~~v~~~~  157 (378)
                      +++...  .+.|..+++.. .....+. ........++++|++..|+++... +.             +.........++
T Consensus       137 yv~~~~~~~~~I~~~~~dg-~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~P~gi~  215 (267)
T 1npe_A          137 YWTDWNRDNPKIETSHMDG-TNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVT  215 (267)
T ss_dssp             EEEECCSSSCEEEEEETTS-CCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEE
T ss_pred             EEEECCCCCcEEEEEecCC-CCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCCCCceEEE
Confidence            333332  46888888753 3223332 333567889999988766655543 33             111122345565


Q ss_pred             EecCCCEEEEEECCCeEEEEEcCCceeeeee--cC--CceEEEEecCCC
Q 046394          158 FHPNGHLMATSGKDCKIKIWDLRKYEVLQTL--PG--HAKTLDFSRKDS  202 (378)
Q Consensus       158 ~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~--~~--~i~~~~~sp~g~  202 (378)
                      +. .+.++++....+.|.++|..+++.+.++  ..  ....+++.|++.
T Consensus       216 ~d-~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~  263 (267)
T 1npe_A          216 SY-GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQC  263 (267)
T ss_dssp             EE-TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred             Ee-CCEEEEEECCCCeEEEEeCCCCCceEEEccccccccceeeecCccC
Confidence            54 3444444446688999999888888777  21  467777777764

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.58  E-value=7.4e-05  Score=63.26  Aligned_cols=164  Identities=11%  Similarity=0.040  Sum_probs=100.6

Q ss_pred             EEeccceeeeeecccceee-----EEeecCCCCceEEEEcCCCCEEEEEe-CCCcEEEEeCCCCeEEeec-c-CCCeeEE
Q 046394           20 RIKQEAIAREVDILSSRNQ-----YDIMLPELGPYTLDFTSSGRYMAAAG-CKGYPYFYNRDGTELHCSK-E-HGEVLKL   91 (378)
Q Consensus        20 ~~~~~~~i~~~d~~~~~~~-----~~l~~~~~~v~~~~~sp~g~~l~~~~-~dg~i~iwd~~~~~~~~~~-~-~~~~~~l   91 (378)
                      .+.+.+.|+.+++......     ..+......+.+++|+|++..|+.+. .++.|.+++.++.....+. . ...+..+
T Consensus         5 ~~~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i   84 (267)
T 1npe_A            5 LFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGI   84 (267)
T ss_dssp             EEEEEEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEE
T ss_pred             EEEcCCeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEE
Confidence            3344556777777654321     11222223578999999776666554 4678999997776444332 2 2345777


Q ss_pred             EE------EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCC---Ce-------------ee-e
Q 046394           92 QF------LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSG---GT-------------ML-C  148 (378)
Q Consensus        92 ~~------~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---~~-------------~~-~  148 (378)
                      ++      ++++....+.|.++++..................++++|++..|+.+...   +.             +. .
T Consensus        85 a~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~  164 (267)
T 1npe_A           85 ALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQD  164 (267)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECT
T ss_pred             EEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEEC
Confidence            77      55555667889999986433222232233567899999976655544432   22             11 1


Q ss_pred             cCCCEEEEEEecCCCEE-EEEECCCeEEEEEcCCce
Q 046394          149 HQGPVSALAFHPNGHLM-ATSGKDCKIKIWDLRKYE  183 (378)
Q Consensus       149 h~~~v~~~~~sp~g~~l-~t~~~d~~i~iwd~~~~~  183 (378)
                      .......++++|++..| ++....+.|.++|+....
T Consensus       165 ~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~  200 (267)
T 1npe_A          165 NLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPG  200 (267)
T ss_dssp             TCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEE
T ss_pred             CCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCc
Confidence            12356789999977665 455566799999997543

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.53  E-value=4.7e-05  Score=68.41  Aligned_cols=216  Identities=12%  Similarity=0.022  Sum_probs=127.6

Q ss_pred             ceeeeeeccc-----ceeeEEeecCC--CCceEEEE-----------c--CCCCEEEEE-eCCCcEEEEeCC-C----Ce
Q 046394           25 AIAREVDILS-----SRNQYDIMLPE--LGPYTLDF-----------T--SSGRYMAAA-GCKGYPYFYNRD-G----TE   78 (378)
Q Consensus        25 ~~i~~~d~~~-----~~~~~~l~~~~--~~v~~~~~-----------s--p~g~~l~~~-~~dg~i~iwd~~-~----~~   78 (378)
                      ..+.+.|+..     ++.+..+....  .....+.|           +  +++++|++. ..++.|+|+|.. .    ..
T Consensus        43 d~la~vDvdp~s~ty~~vi~~~~~p~~gde~HH~gwn~css~~~~~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~  122 (462)
T 2ece_A           43 DFIAVVDVNPKSETYSKIVHKVELPYINDELHHFGWNACSSALCPNGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKI  122 (462)
T ss_dssp             CEEEEEECCTTSTTTTSEEEEEECSSSCCCBCCCEESCCGGGGSTTCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEE
T ss_pred             CeEEEEECCCCCCCcceEEEEEECCCCCCcccccchhhhhhhcccccCCCccCCEEEEccCCCCeEEEEECCCCCCCcee
Confidence            5677788876     67776665432  12333344           6  788877665 458899999953 2    23


Q ss_pred             EEeec--------cCCCeeEEEE----EEEEEeCC------CeEEEEEcCCCcEEEEEecCC---CCeeEEEEcCCCCEE
Q 046394           79 LHCSK--------EHGEVLKLQF----LLASINKL------GQLRYQNVTMGEIVGNFWTGL---GRTDVIRVNPFNGVV  137 (378)
Q Consensus        79 ~~~~~--------~~~~~~~l~~----~l~s~~~d------~~i~iwd~~~~~~~~~~~~~~---~~v~~~~~s~~~~~l  137 (378)
                      ..++.        +...+..+..    +++++..+      +.|.++|..+++.+..+....   .....+.|+|+++.+
T Consensus       123 ~k~ie~~~~~~~~g~s~Ph~~~~~pdGi~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~m  202 (462)
T 2ece_A          123 IKVIEPEEVKKVSGYSRLHTVHCGPDAIYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVL  202 (462)
T ss_dssp             EEEECHHHHHHHHCEEEEEEEEECSSCEEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEE
T ss_pred             eeeechhhcccccCCCcccceeECCCeEEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEE
Confidence            34442        1112233333    44555444      789999999999999886332   224458889999988


Q ss_pred             EEEcC-------------------CCe--------------eee--cCCCEEEEEE--ecCCCEEEEEE------CCCeE
Q 046394          138 SLGHS-------------------GGT--------------MLC--HQGPVSALAF--HPNGHLMATSG------KDCKI  174 (378)
Q Consensus       138 ~~~~~-------------------d~~--------------~~~--h~~~v~~~~~--sp~g~~l~t~~------~d~~i  174 (378)
                      +++.-                   ...              +..  .......+.|  +|+|+++.+++      .+++|
T Consensus       203 vsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V  282 (462)
T 2ece_A          203 VSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSI  282 (462)
T ss_dssp             EECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEE
T ss_pred             EEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceE
Confidence            88851                   111              110  0012334555  99999876655      56688


Q ss_pred             EEEEcCCcee--eeee---------------------cCCceEEEEecCCCcc--------------ccCCCCCceEEEe
Q 046394          175 KIWDLRKYEV--LQTL---------------------PGHAKTLDFSRKDSGD--------------FSGSHNYNRYMGY  217 (378)
Q Consensus       175 ~iwd~~~~~~--~~~~---------------------~~~i~~~~~sp~g~~~--------------~~~~~~~~~~~~~  217 (378)
                      .+|....+..  ...+                     ...+..+.+||||++.              +.+......+...
T Consensus       283 ~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I  362 (462)
T 2ece_A          283 WLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKV  362 (462)
T ss_dssp             EEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEE
T ss_pred             EEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEE
Confidence            7766544321  1111                     1346889999999861              1122223333333


Q ss_pred             eccCC----------c----ceeeeEEcCCCCeEEEec
Q 046394          218 SMVKG----------Y----QIGKVSFRPYEDVLGIGH  241 (378)
Q Consensus       218 ~~~~~----------~----~v~~~~~sp~g~~l~~~~  241 (378)
                      .. .+          .    ....+.++|||++|.+++
T Consensus       363 ~t-GG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          363 KL-GGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             EC-BTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             Ee-CCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            22 11          1    257899999999888777

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.52  E-value=7.5e-05  Score=66.68  Aligned_cols=170  Identities=11%  Similarity=0.035  Sum_probs=107.8

Q ss_pred             ceeeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeeccCCCe-----
Q 046394           15 VEKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKEHGEV-----   88 (378)
Q Consensus        15 ~~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~-----   88 (378)
                      .+..|....++.+..+|..+++..+...............  +..+++++.++.|..+| .+|..+..+......     
T Consensus       103 ~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~  180 (376)
T 3q7m_A          103 GGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRG  180 (376)
T ss_dssp             TTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CC
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecC
Confidence            3456666778899999999999988887653322222232  44788888899999999 578887776543321     


Q ss_pred             -eEEEE---EEEEEeCCCeEEEEEcCCCcEEEEEecCCCC-------eeEEEEcC--CCCEEEEEcCCCe---e------
Q 046394           89 -LKLQF---LLASINKLGQLRYQNVTMGEIVGNFWTGLGR-------TDVIRVNP--FNGVVSLGHSGGT---M------  146 (378)
Q Consensus        89 -~~l~~---~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~-------v~~~~~s~--~~~~l~~~~~d~~---~------  146 (378)
                       .....   .++.++.++.|..+|..+|+.+..+......       +..+...|  .+..+++++.++.   +      
T Consensus       181 ~~~~~~~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~  260 (376)
T 3q7m_A          181 ESAPTTAFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQ  260 (376)
T ss_dssp             CCCCEEETTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCC
T ss_pred             CCCcEEECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCc
Confidence             12222   6777888999999999999988776532110       00010111  2344555554443   1      


Q ss_pred             ---eecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee
Q 046394          147 ---LCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL  188 (378)
Q Consensus       147 ---~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~  188 (378)
                         .........+..  ++..+..++.++.|..+|..+++.+...
T Consensus       261 ~~w~~~~~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~  303 (376)
T 3q7m_A          261 IMWKRELGSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQ  303 (376)
T ss_dssp             EEEEECCCCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEE
T ss_pred             EEeeccCCCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEee
Confidence               111222333333  3567888888999999999999887655

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.52  E-value=4.2e-05  Score=63.65  Aligned_cols=139  Identities=17%  Similarity=0.134  Sum_probs=98.0

Q ss_pred             ceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEe-CCCcEEEEe-CCCCeEEeeccCCCeeEEEE---EEEEEe
Q 046394           25 AIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAG-CKGYPYFYN-RDGTELHCSKEHGEVLKLQF---LLASIN   99 (378)
Q Consensus        25 ~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~-~dg~i~iwd-~~~~~~~~~~~~~~~~~l~~---~l~s~~   99 (378)
                      ..|+++|+.+++.+..+... ..++.....+++..|.... .++.+.+|| .+...+..+........+++   .|+.+.
T Consensus        65 S~v~~vD~~Tgkv~~~~~l~-~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~eG~glt~dg~~L~~Sd  143 (262)
T 3nol_A           65 SSIRKVDIESGKTLQQIELG-KRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDGEGWGLTHNDQYLIMSD  143 (262)
T ss_dssp             EEEEEECTTTCCEEEEEECC-TTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEEECSSCCCCEEECSSCEEECC
T ss_pred             ceEEEEECCCCcEEEEEecC-CccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEEECCCCceEEecCCCEEEEEC
Confidence            38999999999999888775 4555544444566665554 488999999 56777777776544467777   444444


Q ss_pred             CCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCeeeecCCCEEEEEEecCCCEEEEEECCCeEEEEEc
Q 046394          100 KLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGTMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDL  179 (378)
Q Consensus       100 ~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~  179 (378)
                      .++.|.++|..+.+.+..+......                       ..-..++.+.|. +|..++..-.++.|.+.|.
T Consensus       144 Gs~~i~~iDp~T~~v~~~I~V~~~g-----------------------~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp  199 (262)
T 3nol_A          144 GTPVLRFLDPESLTPVRTITVTAHG-----------------------EELPELNELEWV-DGEIFANVWQTNKIVRIDP  199 (262)
T ss_dssp             SSSEEEEECTTTCSEEEEEECEETT-----------------------EECCCEEEEEEE-TTEEEEEETTSSEEEEECT
T ss_pred             CCCeEEEEcCCCCeEEEEEEeccCC-----------------------ccccccceeEEE-CCEEEEEEccCCeEEEEEC
Confidence            5788999999999988887632100                       111334556776 7776666667889999999


Q ss_pred             CCceeeeee
Q 046394          180 RKYEVLQTL  188 (378)
Q Consensus       180 ~~~~~~~~~  188 (378)
                      .+++.+..+
T Consensus       200 ~tG~V~~~I  208 (262)
T 3nol_A          200 ETGKVTGII  208 (262)
T ss_dssp             TTCBEEEEE
T ss_pred             CCCcEEEEE
Confidence            999988876

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.49  E-value=7e-05  Score=62.36  Aligned_cols=167  Identities=10%  Similarity=0.008  Sum_probs=108.7

Q ss_pred             eEEeecCCCCc--eEEEEcCCCCEEEEEeCCC--cEEEEe-CCCCeEEeeccCCCe--eEEEE----EEEEEeCCCeEEE
Q 046394           38 QYDIMLPELGP--YTLDFTSSGRYMAAAGCKG--YPYFYN-RDGTELHCSKEHGEV--LKLQF----LLASINKLGQLRY  106 (378)
Q Consensus        38 ~~~l~~~~~~v--~~~~~sp~g~~l~~~~~dg--~i~iwd-~~~~~~~~~~~~~~~--~~l~~----~l~s~~~d~~i~i  106 (378)
                      +.++ .|+...  ..+.|+ ++.++.+.+.+|  .|+++| .+++.+..+......  -.+.+    +++....++.+.+
T Consensus        34 v~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v  111 (262)
T 3nol_A           34 VHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFV  111 (262)
T ss_dssp             EEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEE
T ss_pred             EEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEE
Confidence            3444 454444  589998 676666666666  899999 567777776654443  34555    5555567899999


Q ss_pred             EEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCeeeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeee
Q 046394          107 QNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGTMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQ  186 (378)
Q Consensus       107 wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~  186 (378)
                      ||..+.+.+.++....                           .+    ..+++++..|+.+..++.|.++|..+.+.+.
T Consensus       112 ~D~~t~~~~~ti~~~~---------------------------eG----~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~  160 (262)
T 3nol_A          112 WNIRNLRQVRSFNYDG---------------------------EG----WGLTHNDQYLIMSDGTPVLRFLDPESLTPVR  160 (262)
T ss_dssp             EETTTCCEEEEEECSS---------------------------CC----CCEEECSSCEEECCSSSEEEEECTTTCSEEE
T ss_pred             EECccCcEEEEEECCC---------------------------Cc----eEEecCCCEEEEECCCCeEEEEcCCCCeEEE
Confidence            9999999999987421                           11    2233566666666667889999999988887


Q ss_pred             ee--c------CCceEEEEecCCCc----------cccCCCCCceEEEeecc-----------CCcceeeeEEcCCCCeE
Q 046394          187 TL--P------GHAKTLDFSRKDSG----------DFSGSHNYNRYMGYSMV-----------KGYQIGKVSFRPYEDVL  237 (378)
Q Consensus       187 ~~--~------~~i~~~~~sp~g~~----------~~~~~~~~~~~~~~~~~-----------~~~~v~~~~~sp~g~~l  237 (378)
                      ++  .      ..++.+.|. +|..          .+.+..++.....+...           .....+.++|+|+++.|
T Consensus       161 ~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~l  239 (262)
T 3nol_A          161 TITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRL  239 (262)
T ss_dssp             EEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEE
T ss_pred             EEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEE
Confidence            76  1      234557776 5542          33345566665555431           12345889999987644


Q ss_pred             E
Q 046394          238 G  238 (378)
Q Consensus       238 ~  238 (378)
                      .
T Consensus       240 f  240 (262)
T 3nol_A          240 F  240 (262)
T ss_dssp             E
T ss_pred             E
Confidence            3

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.44  E-value=6.8e-05  Score=72.41  Aligned_cols=172  Identities=11%  Similarity=0.095  Sum_probs=113.4

Q ss_pred             ceeeEEEeccceeeeeecccceeeEEeecCCCCc-----------eEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEee
Q 046394           15 VEKTWRIKQEAIAREVDILSSRNQYDIMLPELGP-----------YTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCS   82 (378)
Q Consensus        15 ~~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v-----------~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~   82 (378)
                      .+..|....++.|..+|..+++.++.+.......           ..+++  .+..|++++.|+.|+.+| .+|+.+..+
T Consensus        66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~~  143 (668)
T 1kv9_A           66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQ  143 (668)
T ss_dssp             TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeeee
Confidence            3456666678899999999999998886543211           12233  255788888999999999 678888776


Q ss_pred             ccCC-----Ce-eE-EEE--EEEEEeC------CCeEEEEEcCCCcEEEEEecCCC------------------------
Q 046394           83 KEHG-----EV-LK-LQF--LLASINK------LGQLRYQNVTMGEIVGNFWTGLG------------------------  123 (378)
Q Consensus        83 ~~~~-----~~-~~-l~~--~l~s~~~------d~~i~iwd~~~~~~~~~~~~~~~------------------------  123 (378)
                      ....     .. .. +..  .++.+..      ++.|..+|..+|+.+..+.....                        
T Consensus       144 ~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w  223 (668)
T 1kv9_A          144 QTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYW  223 (668)
T ss_dssp             ECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHH
T ss_pred             ccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCcccee
Confidence            5431     11 12 223  4444432      58999999999999888763210                        


Q ss_pred             -------CeeEEEEcCCCCEEEEEcCCC--------------------e-------------ee--ecC-------CCEE
Q 046394          124 -------RTDVIRVNPFNGVVSLGHSGG--------------------T-------------ML--CHQ-------GPVS  154 (378)
Q Consensus       124 -------~v~~~~~s~~~~~l~~~~~d~--------------------~-------------~~--~h~-------~~v~  154 (378)
                             ....++++|+...+++++.++                    .             +.  .|.       .++.
T Consensus       224 ~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~  303 (668)
T 1kv9_A          224 KLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQIT  303 (668)
T ss_dssp             HHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEE
T ss_pred             eeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcE
Confidence                   112468888888888776554                    1             11  111       2233


Q ss_pred             EEEEecCCC---EEEEEECCCeEEEEEcCCceeeeee
Q 046394          155 ALAFHPNGH---LMATSGKDCKIKIWDLRKYEVLQTL  188 (378)
Q Consensus       155 ~~~~sp~g~---~l~t~~~d~~i~iwd~~~~~~~~~~  188 (378)
                      ...+..+|+   .++.++.+|.++++|..+|+++...
T Consensus       304 ~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~  340 (668)
T 1kv9_A          304 LAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAE  340 (668)
T ss_dssp             EEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEE
T ss_pred             EEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccc
Confidence            333334665   6888899999999999999987433

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.42  E-value=7.9e-05  Score=61.45  Aligned_cols=139  Identities=17%  Similarity=0.092  Sum_probs=96.6

Q ss_pred             ceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEE-eCCCcEEEEeC-CCCeEEeeccCCCeeEEEE---EEEEEe
Q 046394           25 AIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAA-GCKGYPYFYNR-DGTELHCSKEHGEVLKLQF---LLASIN   99 (378)
Q Consensus        25 ~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~-~~dg~i~iwd~-~~~~~~~~~~~~~~~~l~~---~l~s~~   99 (378)
                      ..|+.+|+.+++....+... ..++.....+.+..|... -.++.+.+||. +...+.++........+++   .|+.+.
T Consensus        43 S~v~~vD~~tgkv~~~~~l~-~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~Gwglt~dg~~L~vSd  121 (243)
T 3mbr_X           43 SSVRKVDLETGRILQRAEVP-PPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPRARFRYPGEGWALTSDDSHLYMSD  121 (243)
T ss_dssp             CEEEEEETTTCCEEEEEECC-TTCCEEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEEECSSCCCEEEECSSCEEEEC
T ss_pred             ceEEEEECCCCCEEEEEeCC-CCcceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEEEEEeCCCCceEEeeCCCEEEEEC
Confidence            48999999999998888765 344444334445555544 45889999994 6677777765544477777   444445


Q ss_pred             CCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCeeeecCCCEEEEEEecCCCEEEEEECCCeEEEEEc
Q 046394          100 KLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGTMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDL  179 (378)
Q Consensus       100 ~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~  179 (378)
                      .++.|.++|..+.+.+.++......                       .--..++.+.|. +|..++..-.+..|.+.|.
T Consensus       122 gs~~l~~iDp~t~~~~~~I~V~~~g-----------------------~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp  177 (243)
T 3mbr_X          122 GTAVIRKLDPDTLQQVGSIKVTAGG-----------------------RPLDNLNELEWV-NGELLANVWLTSRIARIDP  177 (243)
T ss_dssp             SSSEEEEECTTTCCEEEEEECEETT-----------------------EECCCEEEEEEE-TTEEEEEETTTTEEEEECT
T ss_pred             CCCeEEEEeCCCCeEEEEEEEccCC-----------------------cccccceeeEEe-CCEEEEEECCCCeEEEEEC
Confidence            5889999999999988877632110                       011234556665 6766666667889999999


Q ss_pred             CCceeeeee
Q 046394          180 RKYEVLQTL  188 (378)
Q Consensus       180 ~~~~~~~~~  188 (378)
                      .+++.+..+
T Consensus       178 ~tG~V~~~i  186 (243)
T 3mbr_X          178 ASGKVVAWI  186 (243)
T ss_dssp             TTCBEEEEE
T ss_pred             CCCCEEEEE
Confidence            999988876

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.41  E-value=3.4e-05  Score=74.99  Aligned_cols=173  Identities=10%  Similarity=0.088  Sum_probs=104.6

Q ss_pred             ceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCc-------------EEEEeCCCC---eEEee--cc-C
Q 046394           25 AIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGY-------------PYFYNRDGT---ELHCS--KE-H   85 (378)
Q Consensus        25 ~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~-------------i~iwd~~~~---~~~~~--~~-~   85 (378)
                      ..|+++|+.+++.+.. ..+.....+++|+ ||+.|+.++.+..             |++|++...   ....+  .. |
T Consensus       155 ~~i~v~dl~tg~~~~~-~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~  232 (693)
T 3iuj_A          155 REIHLMDVESKQPLET-PLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQ  232 (693)
T ss_dssp             EEEEEEETTTCSEEEE-EEEEEESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGG
T ss_pred             EEEEEEECCCCCCCcc-ccCCceeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCC
Confidence            5799999999886432 2211113578999 9999998887743             999995332   12223  33 3


Q ss_pred             CC-eeEEEE------EEEEEeC---CCeEEEEEcCCCc-EEEEEecCCCCeeEEEEcCCCCEEEE-EcCCCe--------
Q 046394           86 GE-VLKLQF------LLASINK---LGQLRYQNVTMGE-IVGNFWTGLGRTDVIRVNPFNGVVSL-GHSGGT--------  145 (378)
Q Consensus        86 ~~-~~~l~~------~l~s~~~---d~~i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~d~~--------  145 (378)
                      .. ...+.|      ++++.+.   ++.|.++|+.++. ....+..+....... ++++|..|+. +..++.        
T Consensus       233 ~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d  311 (693)
T 3iuj_A          233 HHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVD  311 (693)
T ss_dssp             CCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEE
T ss_pred             CeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEe
Confidence            33 366677      4444432   3589999998763 344555554444444 6666654443 333321        


Q ss_pred             -----------eeecCCCEEEEEEecCCCEEEEEECCC---eEEEEEcCCceeeeee--c--CCceEEEEecCCCc
Q 046394          146 -----------MLCHQGPVSALAFHPNGHLMATSGKDC---KIKIWDLRKYEVLQTL--P--GHAKTLDFSRKDSG  203 (378)
Q Consensus       146 -----------~~~h~~~v~~~~~sp~g~~l~t~~~d~---~i~iwd~~~~~~~~~~--~--~~i~~~~~sp~g~~  203 (378)
                                 +..|...+.  .|+|++++|+....++   .|.+||+..+. ...+  +  +.+..+.++|++..
T Consensus       312 ~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~-~~~l~~p~~~~~~~~~~~~d~~~  384 (693)
T 3iuj_A          312 AANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGKR-VREVALPGLGSVSGFNGKHDDPA  384 (693)
T ss_dssp             TTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSCE-EEEECCSSSSEEEECCCCTTCSC
T ss_pred             CCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCCe-eEEeecCCCceEEeeecCCCCCE
Confidence                       344555554  8999998887766544   68999987543 3444  2  34556667777664

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.37  E-value=5.1e-08  Score=87.30  Aligned_cols=131  Identities=15%  Similarity=0.113  Sum_probs=70.7

Q ss_pred             CCCEEEEEeCCCcEEEEe-CCCCeEEeeccCCCeeE-EEE----EEEEEeCCCeEEEEEcCCCcEEEEEecCCC-Cee-E
Q 046394           56 SGRYMAAAGCKGYPYFYN-RDGTELHCSKEHGEVLK-LQF----LLASINKLGQLRYQNVTMGEIVGNFWTGLG-RTD-V  127 (378)
Q Consensus        56 ~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~~~-l~~----~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-~v~-~  127 (378)
                      ++..+++++.||.|+.|| .+|+.+..+.. ..+.+ ...    .+++++.|+.|+.||..+|+.+..+..+.. .+. .
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~s   86 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE-DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQAS   86 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC-CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTC
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC-CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccC
Confidence            467899999999999999 68888888776 33322 222    566668999999999999887666543211 000 0


Q ss_pred             EEEcCCCCEEEEEcCCCeeee---cCCC-------EEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee
Q 046394          128 IRVNPFNGVVSLGHSGGTMLC---HQGP-------VSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL  188 (378)
Q Consensus       128 ~~~s~~~~~l~~~~~d~~~~~---h~~~-------v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~  188 (378)
                      ..+. ++..+++++.++.+..   ..+.       -....++|++..+++++.|+.|+.||..+|+.+..+
T Consensus        87 p~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~  156 (369)
T 2hz6_A           87 PCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAFADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNA  156 (369)
T ss_dssp             SCC------CCCCEEEEEEEEECCC----------------------EEEEEEEEEEECCCSSSSSCCCEE
T ss_pred             ceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCCcccccccCCEEEEEecCCEEEEEECCCCCEEEeE
Confidence            0111 2334444444443100   0000       012456778888999999999999999999886655

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.37  E-value=0.00032  Score=57.83  Aligned_cols=165  Identities=10%  Similarity=0.030  Sum_probs=105.5

Q ss_pred             eEEeecCCCC--ceEEEEcCCCCEEEEEeCCC--cEEEEe-CCCCeEEeeccCCCe--eEEEE----EEEEEeCCCeEEE
Q 046394           38 QYDIMLPELG--PYTLDFTSSGRYMAAAGCKG--YPYFYN-RDGTELHCSKEHGEV--LKLQF----LLASINKLGQLRY  106 (378)
Q Consensus        38 ~~~l~~~~~~--v~~~~~sp~g~~l~~~~~dg--~i~iwd-~~~~~~~~~~~~~~~--~~l~~----~l~s~~~d~~i~i  106 (378)
                      +..+ .|+..  ...+.|++ +.++.+.+.+|  .|+++| .+++.+..+.-....  -.+.+    +++....++.+.+
T Consensus        12 ~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v   89 (243)
T 3mbr_X           12 VKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFV   89 (243)
T ss_dssp             EEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEE
T ss_pred             EEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEE
Confidence            4444 44433  45899986 55555555544  899999 567777766554443  44555    5555667899999


Q ss_pred             EEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCeeeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeee
Q 046394          107 QNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGTMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQ  186 (378)
Q Consensus       107 wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~  186 (378)
                      ||..+.+.+.++...                          + .+  ..+  ++++..|+.+..++.|.++|..+.+.+.
T Consensus        90 ~D~~tl~~~~ti~~~--------------------------~-~G--wgl--t~dg~~L~vSdgs~~l~~iDp~t~~~~~  138 (243)
T 3mbr_X           90 YDLATLTPRARFRYP--------------------------G-EG--WAL--TSDDSHLYMSDGTAVIRKLDPDTLQQVG  138 (243)
T ss_dssp             EETTTTEEEEEEECS--------------------------S-CC--CEE--EECSSCEEEECSSSEEEEECTTTCCEEE
T ss_pred             EECCcCcEEEEEeCC--------------------------C-Cc--eEE--eeCCCEEEEECCCCeEEEEeCCCCeEEE
Confidence            999999999998742                          1 11  223  3556666665668899999999988887


Q ss_pred             ee--c------CCceEEEEecCCCc----------cccCCCCCceEEEeecc------------CCcceeeeEEcCCCCe
Q 046394          187 TL--P------GHAKTLDFSRKDSG----------DFSGSHNYNRYMGYSMV------------KGYQIGKVSFRPYEDV  236 (378)
Q Consensus       187 ~~--~------~~i~~~~~sp~g~~----------~~~~~~~~~~~~~~~~~------------~~~~v~~~~~sp~g~~  236 (378)
                      ++  .      ..++.+.|. +|..          .+.+..++..+..+...            .....+.++|+|++..
T Consensus       139 ~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~  217 (243)
T 3mbr_X          139 SIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDR  217 (243)
T ss_dssp             EEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTE
T ss_pred             EEEEccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCE
Confidence            77  1      244556655 4442          33345566665555421            1235678899987753

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.37  E-value=1.5e-05  Score=74.10  Aligned_cols=181  Identities=8%  Similarity=-0.000  Sum_probs=116.8

Q ss_pred             cceeeeeecccceeeEEeecCC-CCceEEEE-c-CCCCEEEEEe------------------CCCcEEEEeCC-CCeEEe
Q 046394           24 EAIAREVDILSSRNQYDIMLPE-LGPYTLDF-T-SSGRYMAAAG------------------CKGYPYFYNRD-GTELHC   81 (378)
Q Consensus        24 ~~~i~~~d~~~~~~~~~l~~~~-~~v~~~~~-s-p~g~~l~~~~------------------~dg~i~iwd~~-~~~~~~   81 (378)
                      +..|.+.|+.+.+....+.... ..+..+++ + |++.++++++                  .++.+.+.|.. ...+..
T Consensus       111 ~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~q  190 (595)
T 1fwx_A          111 NTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQ  190 (595)
T ss_dssp             TTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEE
T ss_pred             CCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEE
Confidence            5779999999999877555432 56889998 5 9999998885                  24578888844 344444


Q ss_pred             eccCCCeeEEEE------EEEEEeCC-------------------------------------CeEEEEEcCC--CcE-E
Q 046394           82 SKEHGEVLKLQF------LLASINKL-------------------------------------GQLRYQNVTM--GEI-V  115 (378)
Q Consensus        82 ~~~~~~~~~l~~------~l~s~~~d-------------------------------------~~i~iwd~~~--~~~-~  115 (378)
                      +.-...+..+++      .++++..+                                     +.|.+.|..+  ++. +
T Consensus       191 I~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~  270 (595)
T 1fwx_A          191 VLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFT  270 (595)
T ss_dssp             EEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSE
T ss_pred             EEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeE
Confidence            432122222222      22222111                                     2477888877  544 4


Q ss_pred             EEEecCCCCeeEEEEcCCCCEEEEEcCCCe------ee-----------------e---cCCCEEEEEEecCCCEEEEEE
Q 046394          116 GNFWTGLGRTDVIRVNPFNGVVSLGHSGGT------ML-----------------C---HQGPVSALAFHPNGHLMATSG  169 (378)
Q Consensus       116 ~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~------~~-----------------~---h~~~v~~~~~sp~g~~l~t~~  169 (378)
                      ..+.. .....++.++|||+++++++....      +.                 .   -......++|+|+|+..++.-
T Consensus       271 ~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG~aY~t~~  349 (595)
T 1fwx_A          271 RYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRGNAYTSLF  349 (595)
T ss_dssp             EEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEECTTSEEEEEET
T ss_pred             EEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcceEEECCCCeEEEEEe
Confidence            55543 246788999999998888775544      11                 0   113567899999995456677


Q ss_pred             CCCeEEEEEcCC----------ceeeeee--cCCc------eEEEEecCCCccc
Q 046394          170 KDCKIKIWDLRK----------YEVLQTL--PGHA------KTLDFSRKDSGDF  205 (378)
Q Consensus       170 ~d~~i~iwd~~~----------~~~~~~~--~~~i------~~~~~sp~g~~~~  205 (378)
                      .|++|.+||+.+          ...+.++  +..+      ..++++|||++.+
T Consensus       350 ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~  403 (595)
T 1fwx_A          350 LDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLV  403 (595)
T ss_dssp             TTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEE
T ss_pred             cCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEE
Confidence            899999999977          4456666  3222      2335678888743

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.29  E-value=0.00021  Score=59.52  Aligned_cols=165  Identities=8%  Similarity=0.001  Sum_probs=107.8

Q ss_pred             eEEeecCCCCc--eEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeeccCCCe--eEEEE----EEEEEeCCCeEEEEE
Q 046394           38 QYDIMLPELGP--YTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKEHGEV--LKLQF----LLASINKLGQLRYQN  108 (378)
Q Consensus        38 ~~~l~~~~~~v--~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~--~~l~~----~l~s~~~d~~i~iwd  108 (378)
                      +..+ .|+...  ..+.|+. +.+..+.+.+|.|+++| .+++.+..+ -....  -.+.+    +++....++.+.+||
T Consensus        46 v~~~-phd~~~ftqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D  122 (268)
T 3nok_A           46 IREY-PHATNAFTQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFTWS  122 (268)
T ss_dssp             EEEE-ECCTTCCEEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEEE
T ss_pred             EEEE-cCCCccccceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEEE
Confidence            3344 444433  5888873 55666777788999999 566666665 33333  44666    556666789999999


Q ss_pred             cCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCeeeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee
Q 046394          109 VTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGTMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL  188 (378)
Q Consensus       109 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~  188 (378)
                      ..+.+.+.++...                          ++ +    ..+++++..|+.+..++.|.++|..+.+.+.++
T Consensus       123 ~~Tl~~~~ti~~~--------------------------~e-G----wGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I  171 (268)
T 3nok_A          123 GMPPQRERTTRYS--------------------------GE-G----WGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAV  171 (268)
T ss_dssp             TTTTEEEEEEECS--------------------------SC-C----CCEEEETTEEEEECSSSEEEEECTTTCCEEEEE
T ss_pred             CCcCcEEEEEeCC--------------------------Cc-e----eEEecCCCEEEEECCCCEEEEEcCCCCeEEEEE
Confidence            9999999998742                          11 1    123356777777777889999999999888877


Q ss_pred             --c------CCceEEEEecCCCc----------cccCCCCCceEEEeecc------------CCcceeeeEEcCCCCeE
Q 046394          189 --P------GHAKTLDFSRKDSG----------DFSGSHNYNRYMGYSMV------------KGYQIGKVSFRPYEDVL  237 (378)
Q Consensus       189 --~------~~i~~~~~sp~g~~----------~~~~~~~~~~~~~~~~~------------~~~~v~~~~~sp~g~~l  237 (378)
                        .      ..++.+.|. +|..          .+.+..++..+..+...            .....+.++|+|++..|
T Consensus       172 ~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rl  249 (268)
T 3nok_A          172 QVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRI  249 (268)
T ss_dssp             ECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCE
T ss_pred             EeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEE
Confidence              1      234666766 5543          33345555555555431            12356789999976533

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.29  E-value=0.00037  Score=60.76  Aligned_cols=164  Identities=13%  Similarity=0.069  Sum_probs=101.3

Q ss_pred             eecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEeeccC---------------------CCeeEEEE-----E
Q 046394           41 IMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTELHCSKEH---------------------GEVLKLQF-----L   94 (378)
Q Consensus        41 l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~---------------------~~~~~l~~-----~   94 (378)
                      +.+.-..+.+++|+++|++++++..++.|..|+..+..+..+...                     ..+..+++     .
T Consensus        14 ~~g~~~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~   93 (322)
T 2fp8_A           14 IEAPSYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ   93 (322)
T ss_dssp             EECSSSCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE
T ss_pred             cCCccCCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCc
Confidence            443334677899999998788888899999999766544433210                     12456666     4


Q ss_pred             EEEEeCCCeEEEEEcCCCcEEEEEec-----CCCCeeEEEEcC-CCCEEEEEcCC-----------------Ce---eee
Q 046394           95 LASINKLGQLRYQNVTMGEIVGNFWT-----GLGRTDVIRVNP-FNGVVSLGHSG-----------------GT---MLC  148 (378)
Q Consensus        95 l~s~~~d~~i~iwd~~~~~~~~~~~~-----~~~~v~~~~~s~-~~~~l~~~~~d-----------------~~---~~~  148 (378)
                      |+.+...+.|..+|..++.. ..+..     ....++.+++.+ +|.++++....                 +.   +..
T Consensus        94 l~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~  172 (322)
T 2fp8_A           94 LYIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDP  172 (322)
T ss_dssp             EEEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEET
T ss_pred             EEEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeC
Confidence            55554455588888765532 22211     123578899999 99877664331                 21   111


Q ss_pred             ----------cCCCEEEEEEecCCCEEEEE-ECCCeEEEEEcCCc---e--eeeeecCCceEEEEecCCCcccc
Q 046394          149 ----------HQGPVSALAFHPNGHLMATS-GKDCKIKIWDLRKY---E--VLQTLPGHAKTLDFSRKDSGDFS  206 (378)
Q Consensus       149 ----------h~~~v~~~~~sp~g~~l~t~-~~d~~i~iwd~~~~---~--~~~~~~~~i~~~~~sp~g~~~~~  206 (378)
                                .......++|+|+|++|..+ +..+.|.+||+...   .  .+..+.+ ...+++.++|.+.+.
T Consensus       173 ~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va  245 (322)
T 2fp8_A          173 STKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVS  245 (322)
T ss_dssp             TTTEEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEE
T ss_pred             CCCEEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEE
Confidence                      11234578999999866554 56689999998742   1  1112234 778889998865433

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.27  E-value=0.00041  Score=65.76  Aligned_cols=172  Identities=10%  Similarity=0.043  Sum_probs=111.9

Q ss_pred             eeeEEEec-cceeeeeec-ccceeeEEeecCCCC-----------ceEEEEcCCCCE----EEEEeCCCcEEEEe-CCCC
Q 046394           16 EKTWRIKQ-EAIAREVDI-LSSRNQYDIMLPELG-----------PYTLDFTSSGRY----MAAAGCKGYPYFYN-RDGT   77 (378)
Q Consensus        16 ~~~~~~~~-~~~i~~~d~-~~~~~~~~l~~~~~~-----------v~~~~~sp~g~~----l~~~~~dg~i~iwd-~~~~   77 (378)
                      +..|.... ++.|..+|. .+++.+.........           ...++++|.+..    |++++.|+.|..+| .+|+
T Consensus        63 g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~  142 (599)
T 1w6s_A           63 GKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGE  142 (599)
T ss_dssp             TEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCC
T ss_pred             CEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCCC
Confidence            45566666 688999999 899999888654321           123566544444    88888899999999 6888


Q ss_pred             eEEeeccCC-----Ce-eE-EEE--EEEEEe------CCCeEEEEEcCCCcEEEEEecCCCC------------------
Q 046394           78 ELHCSKEHG-----EV-LK-LQF--LLASIN------KLGQLRYQNVTMGEIVGNFWTGLGR------------------  124 (378)
Q Consensus        78 ~~~~~~~~~-----~~-~~-l~~--~l~s~~------~d~~i~iwd~~~~~~~~~~~~~~~~------------------  124 (378)
                      .+.......     .+ .. +..  .++.++      .++.|+.+|..+|+.+..+......                  
T Consensus       143 ~~W~~~~~~~~~~~~~~ssP~v~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~  222 (599)
T 1w6s_A          143 TVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQ  222 (599)
T ss_dssp             EEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCC
T ss_pred             EEEeecCCCCCccceeecCCEEECCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccccccccccc
Confidence            887654332     22 22 223  445444      3799999999999998887643211                  


Q ss_pred             -------------------e-eEEEEcCCCCEEEEEcCCC----------------e----------------eeec---
Q 046394          125 -------------------T-DVIRVNPFNGVVSLGHSGG----------------T----------------MLCH---  149 (378)
Q Consensus       125 -------------------v-~~~~~s~~~~~l~~~~~d~----------------~----------------~~~h---  149 (378)
                                         + ..+++.+....++.++.++                .                ...|   
T Consensus       223 ~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~w  302 (599)
T 1w6s_A          223 KGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEW  302 (599)
T ss_dssp             TTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSS
T ss_pred             cccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccc
Confidence                               0 1356667777777776553                1                1111   


Q ss_pred             -----CCCEEEEEEe-cCC---CEEEEEECCCeEEEEEcCCceeeeee
Q 046394          150 -----QGPVSALAFH-PNG---HLMATSGKDCKIKIWDLRKYEVLQTL  188 (378)
Q Consensus       150 -----~~~v~~~~~s-p~g---~~l~t~~~d~~i~iwd~~~~~~~~~~  188 (378)
                           ..++. +... .+|   ..++.++.+|.+.++|..+|+++...
T Consensus       303 d~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~  349 (599)
T 1w6s_A          303 DYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSAN  349 (599)
T ss_dssp             CCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             cccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecc
Confidence                 11221 2222 467   46777889999999999999987655

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.24  E-value=0.00071  Score=56.47  Aligned_cols=103  Identities=5%  Similarity=-0.065  Sum_probs=66.3

Q ss_pred             EeecCCCCceEEEEcCCCCEEE-EEeCCCcEEEEeCCCCeEEeec--cCCCeeEEEE-----EEEEEeCCCeEEEEEcCC
Q 046394           40 DIMLPELGPYTLDFTSSGRYMA-AAGCKGYPYFYNRDGTELHCSK--EHGEVLKLQF-----LLASINKLGQLRYQNVTM  111 (378)
Q Consensus        40 ~l~~~~~~v~~~~~sp~g~~l~-~~~~dg~i~iwd~~~~~~~~~~--~~~~~~~l~~-----~l~s~~~d~~i~iwd~~~  111 (378)
                      .+.+-...+..++|+|++..|+ +...++.|...|.++..+..+.  +..+.-.+++     ++++.-.++.+.++++..
T Consensus        21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~  100 (255)
T 3qqz_A           21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTNGDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTP  100 (255)
T ss_dssp             ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETTCCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECT
T ss_pred             ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCCCCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCC
Confidence            3445556799999999876554 5677889999998888887763  3345577777     545555678899998865


Q ss_pred             CcE---EEEEec------CCCCeeEEEEcCCCCEEEEEcC
Q 046394          112 GEI---VGNFWT------GLGRTDVIRVNPFNGVVSLGHS  142 (378)
Q Consensus       112 ~~~---~~~~~~------~~~~v~~~~~s~~~~~l~~~~~  142 (378)
                      ...   +.....      .......++|+|.+..|+++..
T Consensus       101 ~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E  140 (255)
T 3qqz_A          101 NSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKE  140 (255)
T ss_dssp             TCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEE
T ss_pred             CCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEEC
Confidence            432   222221      1233466777776655554443

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.16  E-value=0.00086  Score=63.41  Aligned_cols=103  Identities=6%  Similarity=0.015  Sum_probs=70.4

Q ss_pred             eeeEEEec-cceeeeeec-ccceeeEEeecCCCC-c----------eEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEe
Q 046394           16 EKTWRIKQ-EAIAREVDI-LSSRNQYDIMLPELG-P----------YTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHC   81 (378)
Q Consensus        16 ~~~~~~~~-~~~i~~~d~-~~~~~~~~l~~~~~~-v----------~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~   81 (378)
                      +..|.... ++.+..+|. .+++.++........ +          ..+++  .+..+++++.|+.|..+| .+|+.+..
T Consensus        63 g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~  140 (571)
T 2ad6_A           63 DMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKINWE  140 (571)
T ss_dssp             TEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             CEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCEEEE
Confidence            44566666 688999999 899998887654221 0          12233  255788888899999999 57888876


Q ss_pred             eccCC-----Ce-eE-EEE--EEEEEeC------CCeEEEEEcCCCcEEEEEec
Q 046394           82 SKEHG-----EV-LK-LQF--LLASINK------LGQLRYQNVTMGEIVGNFWT  120 (378)
Q Consensus        82 ~~~~~-----~~-~~-l~~--~l~s~~~------d~~i~iwd~~~~~~~~~~~~  120 (378)
                      .....     .+ .. +..  .++.++.      ++.|..+|..+|+.+..+..
T Consensus       141 ~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~  194 (571)
T 2ad6_A          141 VEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFA  194 (571)
T ss_dssp             EECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred             ecCCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEcc
Confidence            54322     22 22 223  4555544      79999999999999887764

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.15  E-value=0.003  Score=54.53  Aligned_cols=171  Identities=10%  Similarity=-0.021  Sum_probs=99.6

Q ss_pred             ccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEeeccCCCeeEEEE-----EEEEEe-CCC-eEE
Q 046394           33 LSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTELHCSKEHGEVLKLQF-----LLASIN-KLG-QLR  105 (378)
Q Consensus        33 ~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~l~~-----~l~s~~-~d~-~i~  105 (378)
                      .+.+.+..+... ..+.+++|+|+|+++++-..++.|..||..+.....+.....+..+++     ++++.. .++ .|.
T Consensus        20 ~~~~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~~~~~~~~~~p~gia~~~dG~l~vad~~~~~~~v~   98 (306)
T 2p4o_A           20 APAKIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVV   98 (306)
T ss_dssp             CCEEEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred             CCceEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCCceEEEEeCCCCceeEEEcCCCcEEEEeccCCcceEE
Confidence            334455556543 567899999999866666678899999987766554443334578888     444432 333 577


Q ss_pred             EEEcCCCcEEEEEec-CCCCeeEEEEcCCCCEEEEEcCCCe---eee---------------------cCCCEEEEEEec
Q 046394          106 YQNVTMGEIVGNFWT-GLGRTDVIRVNPFNGVVSLGHSGGT---MLC---------------------HQGPVSALAFHP  160 (378)
Q Consensus       106 iwd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~d~~---~~~---------------------h~~~v~~~~~sp  160 (378)
                      .+|..+++....... .......++..+++..+++-...+.   +..                     .-.....+  +|
T Consensus        99 ~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~  176 (306)
T 2p4o_A           99 SLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KR  176 (306)
T ss_dssp             EEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EE
T ss_pred             EEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--Cc
Confidence            778777775433322 1223344554444443443333333   100                     00123445  78


Q ss_pred             CCCEEE-EEECCCeEEEEEcCC-cee--eeee--cCCceEEEEecCCCcccc
Q 046394          161 NGHLMA-TSGKDCKIKIWDLRK-YEV--LQTL--PGHAKTLDFSRKDSGDFS  206 (378)
Q Consensus       161 ~g~~l~-t~~~d~~i~iwd~~~-~~~--~~~~--~~~i~~~~~sp~g~~~~~  206 (378)
                      ++.+|. +-+..+.|..||+.. +..  ...+  ......++++++|.+.+.
T Consensus       177 dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG~l~va  228 (306)
T 2p4o_A          177 FGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGA  228 (306)
T ss_dssp             ETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEE
T ss_pred             CCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEeccCCCCCeEECCCCCEEEE
Confidence            887654 455678999999874 432  2222  245678899999875333

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.15  E-value=0.0023  Score=57.25  Aligned_cols=165  Identities=15%  Similarity=0.078  Sum_probs=101.3

Q ss_pred             eeeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEe-CCCcEEEEeCCCCeEEeecc--CCCeeEEE
Q 046394           16 EKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAG-CKGYPYFYNRDGTELHCSKE--HGEVLKLQ   92 (378)
Q Consensus        16 ~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~-~dg~i~iwd~~~~~~~~~~~--~~~~~~l~   92 (378)
                      +..+.+.....|+.+++........+.. ...+..++|++.+..|+.+. ..+.|..++.++.....+..  ...+..++
T Consensus        87 ~~~l~~~~~~~I~~i~~~~~~~~~~~~~-~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~gla  165 (386)
T 3v65_B           87 EPVLLFANRIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLA  165 (386)
T ss_dssp             CCEEEEECBSCEEEECTTSCCCEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEE
T ss_pred             cceeEeecCccceeeccCCCcEEEEecC-CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEE
Confidence            3445556667778888876654444433 35688999998766666554 46789999987765544322  22334454


Q ss_pred             E------EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCC--e-------------e-eecC
Q 046394           93 F------LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGG--T-------------M-LCHQ  150 (378)
Q Consensus        93 ~------~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~--~-------------~-~~h~  150 (378)
                      +      ++++-...+.|.+.++........+.........++++|.+..|+.+....  .             + ...-
T Consensus       166 vd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~  245 (386)
T 3v65_B          166 VDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHL  245 (386)
T ss_dssp             EETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSC
T ss_pred             EEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCC
Confidence            4      555666677888888864443333333446778899998776555544332  2             1 1122


Q ss_pred             CCEEEEEEecCCCEE-EEEECCCeEEEEEcCC
Q 046394          151 GPVSALAFHPNGHLM-ATSGKDCKIKIWDLRK  181 (378)
Q Consensus       151 ~~v~~~~~sp~g~~l-~t~~~d~~i~iwd~~~  181 (378)
                      .....|+|+|++..| ++-+..+.|..+|+..
T Consensus       246 ~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG  277 (386)
T 3v65_B          246 FWPNGLTIDYAGRRMYWVDAKHHVIERANLDG  277 (386)
T ss_dssp             SCEEEEEEEGGGTEEEEEETTTTEEEEECTTS
T ss_pred             CCeeeEEEeCCCCEEEEEECCCCEEEEEeCCC
Confidence            346788898755544 4444566788888753

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.15  E-value=0.0035  Score=55.24  Aligned_cols=165  Identities=15%  Similarity=0.081  Sum_probs=102.0

Q ss_pred             eeeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEe-CCCcEEEEeCCCCeEEeecc--CCCeeEEE
Q 046394           16 EKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAG-CKGYPYFYNRDGTELHCSKE--HGEVLKLQ   92 (378)
Q Consensus        16 ~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~-~dg~i~iwd~~~~~~~~~~~--~~~~~~l~   92 (378)
                      +..+.+.....|+..++........+.. ...+..++|++.+..|+.+. ..+.|..++.++.....+..  ...+..++
T Consensus        44 ~~~ll~~~~~~I~~i~~~g~~~~~~~~~-~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~gla  122 (349)
T 3v64_C           44 EPVLLFANRIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLA  122 (349)
T ss_dssp             CCEEEEECBSCEEEECTTSCCEEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEE
T ss_pred             CceeEeecccceEEEeCCCCeeEEeecC-CCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEE
Confidence            4445556666777777766544333333 35688999998776666554 46789999977765444322  22335555


Q ss_pred             E------EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCC--e-------------e-eecC
Q 046394           93 F------LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGG--T-------------M-LCHQ  150 (378)
Q Consensus        93 ~------~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~--~-------------~-~~h~  150 (378)
                      +      ++++-...+.|.+.++........+.........++++|.+..|+.+....  .             + ...-
T Consensus       123 vd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~  202 (349)
T 3v64_C          123 VDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHL  202 (349)
T ss_dssp             EETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSC
T ss_pred             EecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCC
Confidence            5      556666678899999865443333333446778999999766555444322  2             1 1122


Q ss_pred             CCEEEEEEecCCCEEE-EEECCCeEEEEEcCC
Q 046394          151 GPVSALAFHPNGHLMA-TSGKDCKIKIWDLRK  181 (378)
Q Consensus       151 ~~v~~~~~sp~g~~l~-t~~~d~~i~iwd~~~  181 (378)
                      .....|+++|++..|. +-+..+.|..+|+..
T Consensus       203 ~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG  234 (349)
T 3v64_C          203 FWPNGLTIDYAGRRMYWVDAKHHVIERANLDG  234 (349)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CCcceEEEeCCCCEEEEEECCCCEEEEEeCCC
Confidence            3467899998655554 444567888888754

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.11  E-value=0.00011  Score=61.74  Aligned_cols=147  Identities=11%  Similarity=0.029  Sum_probs=95.3

Q ss_pred             eEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeC-CCCeEEeeccCC------CeeE
Q 046394           18 TWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNR-DGTELHCSKEHG------EVLK   90 (378)
Q Consensus        18 ~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~------~~~~   90 (378)
                      .+.-|.++.+.++|..+.+.+..+...  ....+.+++||..|+++..++.|.++|. +...+..+.-..      .++.
T Consensus        79 yv~t~~~~~v~viD~~t~~v~~~i~~g--~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~ne  156 (266)
T 2iwa_A           79 YQVVWLKNIGFIYDRRTLSNIKNFTHQ--MKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNE  156 (266)
T ss_dssp             EEEETTCSEEEEEETTTTEEEEEEECC--SSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEE
T ss_pred             EEEEecCCEEEEEECCCCcEEEEEECC--CCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCccccccee
Confidence            334466899999999999998888654  1223446678887777777889999995 445555544221      2356


Q ss_pred             EEE----EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCeeeecCCCEEEEEEecCCCE-E
Q 046394           91 LQF----LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGTMLCHQGPVSALAFHPNGHL-M  165 (378)
Q Consensus        91 l~~----~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~~~~h~~~v~~~~~sp~g~~-l  165 (378)
                      +.|    +++....++.|.+.|..+++.+..+.........+  . ..            ..-......|+|+|+++. +
T Consensus       157 le~~dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~--~-~~------------~~~~~v~nGIa~~~~~~~lf  221 (266)
T 2iwa_A          157 LEYINGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLI--D-EG------------FRDIDVLNGIAWDQENKRIF  221 (266)
T ss_dssp             EEEETTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHH--H-TT------------CTTCCCEEEEEEETTTTEEE
T ss_pred             EEEECCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccc--c-cc------------ccccCceEEEEEcCCCCEEE
Confidence            777    55666668899999999999988876310000000  0 00            001134578899998765 5


Q ss_pred             EEEECCCeEEEEEcCC
Q 046394          166 ATSGKDCKIKIWDLRK  181 (378)
Q Consensus       166 ~t~~~d~~i~iwd~~~  181 (378)
                      +|+...+.|.+.++..
T Consensus       222 VTgk~~~~v~~i~l~~  237 (266)
T 2iwa_A          222 VTGKLWPKLFEIKLHL  237 (266)
T ss_dssp             EEETTCSEEEEEEEEE
T ss_pred             EECCCCCeEEEEEEec
Confidence            5666777888887754

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.98  E-value=0.0026  Score=57.87  Aligned_cols=126  Identities=13%  Similarity=0.029  Sum_probs=76.8

Q ss_pred             eeeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCC-C----cEEEEeCCCCeE--EeeccCCCe
Q 046394           16 EKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCK-G----YPYFYNRDGTEL--HCSKEHGEV   88 (378)
Q Consensus        16 ~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~d-g----~i~iwd~~~~~~--~~~~~~~~~   88 (378)
                      ...|.....+.|..+|+.++.... +......+..|+|+++|++|+++... +    .+.+++..+...  ..+.....+
T Consensus       150 g~Lyv~d~~~~I~~id~~~~~v~~-~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~~~~~~l~~~~~p  228 (430)
T 3tc9_A          150 NHLYLVGEQHPTRLIDFEKEYVST-VYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGFKVITELTKGQNC  228 (430)
T ss_dssp             EEEEEEEBTEEEEEEETTTTEEEE-EECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTSCSEEEEEECSSC
T ss_pred             CeEEEEeCCCcEEEEECCCCEEEE-EecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCceeeeeeeccCCCc
Confidence            444444444778888887765433 33344668899999999977766542 2    344455444322  233333344


Q ss_pred             eEEEE------EEEEEeCCCeEEEEEcCCCcEEEEEec-CCCCeeEEEEcCCCCEEEEEcC
Q 046394           89 LKLQF------LLASINKLGQLRYQNVTMGEIVGNFWT-GLGRTDVIRVNPFNGVVSLGHS  142 (378)
Q Consensus        89 ~~l~~------~l~s~~~d~~i~iwd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~  142 (378)
                      ..+++      ++++-..++.|..++...+.....+.. .......++|+|++++|+++..
T Consensus       229 ~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~  289 (430)
T 3tc9_A          229 NGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVV  289 (430)
T ss_dssp             CCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEET
T ss_pred             eEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEEC
Confidence            55666      556666678899999876654333322 2245778999999996665543

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=97.95  E-value=0.0086  Score=52.73  Aligned_cols=159  Identities=11%  Similarity=-0.001  Sum_probs=96.9

Q ss_pred             CCCceEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEee-ccCCCeeEEEE------EEEEEeCCCeEEEEEcCCCcEEEE
Q 046394           45 ELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTELHCS-KEHGEVLKLQF------LLASINKLGQLRYQNVTMGEIVGN  117 (378)
Q Consensus        45 ~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~l~~------~l~s~~~d~~i~iwd~~~~~~~~~  117 (378)
                      .....|.+..+++ +|+.+. ...|+..+..+.....+ .....+..++|      ++.+-...+.|..+++..+.....
T Consensus        33 ~d~~~C~~~~~~~-~ll~~~-~~~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~  110 (349)
T 3v64_C           33 PDRRSCKALGPEP-VLLFAN-RIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEV  110 (349)
T ss_dssp             TTSSCEEESSSCC-EEEEEC-BSCEEEECTTSCCEEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred             CCCCcccccccCc-eeEeec-ccceEEEeCCCCeeEEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEE
Confidence            3455677766643 555543 34688888777554443 34444577887      555555678899999876654444


Q ss_pred             EecCCCCeeEEEEcCCCCEEEEE-cCCCe--------------eeecCCCEEEEEEecCCCE-EEEEECC-CeEEEEEcC
Q 046394          118 FWTGLGRTDVIRVNPFNGVVSLG-HSGGT--------------MLCHQGPVSALAFHPNGHL-MATSGKD-CKIKIWDLR  180 (378)
Q Consensus       118 ~~~~~~~v~~~~~s~~~~~l~~~-~~d~~--------------~~~h~~~v~~~~~sp~g~~-l~t~~~d-~~i~iwd~~  180 (378)
                      +.........+++.+.+..|+.+ ...+.              +...-.....++++|.+.. +++-... +.|..+++.
T Consensus       111 ~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~d  190 (349)
T 3v64_C          111 VSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD  190 (349)
T ss_dssp             ECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred             EeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCC
Confidence            43344566789998865544333 32222              1122345788999995544 4554455 788888876


Q ss_pred             Cceeeeee----cCCceEEEEecCCCcccc
Q 046394          181 KYEVLQTL----PGHAKTLDFSRKDSGDFS  206 (378)
Q Consensus       181 ~~~~~~~~----~~~i~~~~~sp~g~~~~~  206 (378)
                      . .....+    -...+.++|+|++....|
T Consensus       191 G-~~~~~~~~~~~~~PnGla~d~~~~~lY~  219 (349)
T 3v64_C          191 G-SGRRIIADTHLFWPNGLTIDYAGRRMYW  219 (349)
T ss_dssp             S-CSCEESCCSSCSCEEEEEEETTTTEEEE
T ss_pred             C-CCcEEEEECCCCCcceEEEeCCCCEEEE
Confidence            4 333333    245789999987765444

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=97.94  E-value=0.00095  Score=64.44  Aligned_cols=96  Identities=9%  Similarity=0.042  Sum_probs=69.4

Q ss_pred             cceeeeeecccceeeEEeecCCC-------------------------------CceEEEEcCCCCEEEEEeCCC-----
Q 046394           24 EAIAREVDILSSRNQYDIMLPEL-------------------------------GPYTLDFTSSGRYMAAAGCKG-----   67 (378)
Q Consensus        24 ~~~i~~~d~~~~~~~~~l~~~~~-------------------------------~v~~~~~sp~g~~l~~~~~dg-----   67 (378)
                      ++.|..+|..+++.++.+.....                               ....++++|++..+++++.++     
T Consensus       177 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~  256 (668)
T 1kv9_A          177 RGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNR  256 (668)
T ss_dssp             BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCH
T ss_pred             CCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCcccc
Confidence            47899999999999988763210                               012478888888888887766     


Q ss_pred             --------------cEEEEe-CCCCeEEeeccC--C-------C-e--eEEEE------EEEEEeCCCeEEEEEcCCCcE
Q 046394           68 --------------YPYFYN-RDGTELHCSKEH--G-------E-V--LKLQF------LLASINKLGQLRYQNVTMGEI  114 (378)
Q Consensus        68 --------------~i~iwd-~~~~~~~~~~~~--~-------~-~--~~l~~------~l~s~~~d~~i~iwd~~~~~~  114 (378)
                                    .|..+| .+|..+..+...  .       . .  ..+.+      .++.++.+|.++++|..+|+.
T Consensus       257 ~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~  336 (668)
T 1kv9_A          257 EVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKL  336 (668)
T ss_dssp             HHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE
T ss_pred             CCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCE
Confidence                          399999 678888776542  1       1 1  22223      478888999999999999998


Q ss_pred             EEEEe
Q 046394          115 VGNFW  119 (378)
Q Consensus       115 ~~~~~  119 (378)
                      +....
T Consensus       337 l~~~~  341 (668)
T 1kv9_A          337 ISAEK  341 (668)
T ss_dssp             EEEEE
T ss_pred             ecccc
Confidence            85544

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=97.91  E-value=0.0099  Score=53.14  Aligned_cols=157  Identities=11%  Similarity=0.019  Sum_probs=94.3

Q ss_pred             CceEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEe-eccCCCeeEEEE------EEEEEeCCCeEEEEEcCCCcEEEEEe
Q 046394           47 GPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTELHC-SKEHGEVLKLQF------LLASINKLGQLRYQNVTMGEIVGNFW  119 (378)
Q Consensus        47 ~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~~l~~------~l~s~~~d~~i~iwd~~~~~~~~~~~  119 (378)
                      .-.|.+..+. .+|+.+. ...|+.++..+..... +.....+..++|      ++++-...+.|..+++..+.....+.
T Consensus        78 ~~~C~~~~~~-~~l~~~~-~~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~  155 (386)
T 3v65_B           78 RRSCKALGPE-PVLLFAN-RIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS  155 (386)
T ss_dssp             SSCEEECSSC-CEEEEEC-BSCEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEEC
T ss_pred             CCeECCcccc-ceeEeec-CccceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEe
Confidence            3445555553 3455443 3578888976654443 334445578888      55555667889999987665444444


Q ss_pred             cCCCCeeEEEEcCCCCEEEEE-cCCCe--------------eeecCCCEEEEEEecCCCEEE-EEECC-CeEEEEEcCCc
Q 046394          120 TGLGRTDVIRVNPFNGVVSLG-HSGGT--------------MLCHQGPVSALAFHPNGHLMA-TSGKD-CKIKIWDLRKY  182 (378)
Q Consensus       120 ~~~~~v~~~~~s~~~~~l~~~-~~d~~--------------~~~h~~~v~~~~~sp~g~~l~-t~~~d-~~i~iwd~~~~  182 (378)
                      ........+++++.+..|+.+ ...+.              +...-.....++++|.+.+|. +-... +.|..+++.. 
T Consensus       156 ~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG-  234 (386)
T 3v65_B          156 TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG-  234 (386)
T ss_dssp             SSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-
T ss_pred             CCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCC-
Confidence            344566788998866544433 32222              112234578899999655544 44444 6888888754 


Q ss_pred             eeeeee----cCCceEEEEecCCCcccc
Q 046394          183 EVLQTL----PGHAKTLDFSRKDSGDFS  206 (378)
Q Consensus       183 ~~~~~~----~~~i~~~~~sp~g~~~~~  206 (378)
                      .....+    -...+.|+|+|++....|
T Consensus       235 ~~~~~~~~~~~~~PnGlavd~~~~~lY~  262 (386)
T 3v65_B          235 SGRRIIADTHLFWPNGLTIDYAGRRMYW  262 (386)
T ss_dssp             CSCEEEECSSCSCEEEEEEEGGGTEEEE
T ss_pred             CCcEEEEECCCCCeeeEEEeCCCCEEEE
Confidence            333333    245789999987665444

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=97.91  E-value=0.0018  Score=61.27  Aligned_cols=97  Identities=9%  Similarity=0.027  Sum_probs=65.8

Q ss_pred             cceeeeeecccceeeEEeecCCCC-------------------------------------c-eEEEEcCCCCEEEEEeC
Q 046394           24 EAIAREVDILSSRNQYDIMLPELG-------------------------------------P-YTLDFTSSGRYMAAAGC   65 (378)
Q Consensus        24 ~~~i~~~d~~~~~~~~~l~~~~~~-------------------------------------v-~~~~~sp~g~~l~~~~~   65 (378)
                      ++.|..+|..+++.+..+......                                     + ..+++.++...++.+..
T Consensus       175 ~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g  254 (571)
T 2ad6_A          175 RGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSG  254 (571)
T ss_dssp             CCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECC
T ss_pred             CCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECC
Confidence            578999999999998887653211                                     0 13567776667776653


Q ss_pred             C----------------CcEEEEe-CCCCeEEeeccCC----------CeeEEE--------EEEEEEeCCCeEEEEEcC
Q 046394           66 K----------------GYPYFYN-RDGTELHCSKEHG----------EVLKLQ--------FLLASINKLGQLRYQNVT  110 (378)
Q Consensus        66 d----------------g~i~iwd-~~~~~~~~~~~~~----------~~~~l~--------~~l~s~~~d~~i~iwd~~  110 (378)
                      +                +.|..+| .+|..+..++...          .+.-+.        ..++.++.+|.+.++|..
T Consensus       255 ~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~  334 (571)
T 2ad6_A          255 NPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRE  334 (571)
T ss_dssp             CCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETT
T ss_pred             CCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECC
Confidence            2                2589999 5778777765321          111111        135678889999999999


Q ss_pred             CCcEEEEEec
Q 046394          111 MGEIVGNFWT  120 (378)
Q Consensus       111 ~~~~~~~~~~  120 (378)
                      +|+.+..+..
T Consensus       335 tG~~~w~~~~  344 (571)
T 2ad6_A          335 NGNLIVAEKV  344 (571)
T ss_dssp             TCCEEEEEES
T ss_pred             CCCEEeeecc
Confidence            9998877654

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=97.90  E-value=0.023  Score=56.01  Aligned_cols=218  Identities=10%  Similarity=-0.012  Sum_probs=128.4

Q ss_pred             cceeeeeecccceeeEEeec-------CCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEeeccC---------CC
Q 046394           24 EAIAREVDILSSRNQYDIML-------PELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTELHCSKEH---------GE   87 (378)
Q Consensus        24 ~~~i~~~d~~~~~~~~~l~~-------~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~---------~~   87 (378)
                      .+-+..||..+++...-...       ....|.++...++|.+. .|+.+ -|.+||........+...         ..
T Consensus       234 ~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lW-igt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~  311 (795)
T 4a2l_A          234 GAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLW-IGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRS  311 (795)
T ss_dssp             SSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEE-EEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSC
T ss_pred             CCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEE-EEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCc
Confidence            33466677766543222111       13468899999988744 44455 589999766555544321         12


Q ss_pred             eeEEEE----EEEEEeCCCeEEEEEcCCCcEEEEEec-------CCCCeeEEEEcCCCCEEEEEcCCCe---------ee
Q 046394           88 VLKLQF----LLASINKLGQLRYQNVTMGEIVGNFWT-------GLGRTDVIRVNPFNGVVSLGHSGGT---------ML  147 (378)
Q Consensus        88 ~~~l~~----~l~s~~~d~~i~iwd~~~~~~~~~~~~-------~~~~v~~~~~s~~~~~l~~~~~d~~---------~~  147 (378)
                      +.++..    .+-.|+.++-|..|+..++.... +..       ....|.++...++|.+.+.....|.         +.
T Consensus       312 i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~-~~~~~~~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~  390 (795)
T 4a2l_A          312 VRSIFMDSQGGMWLGTYFGGLNYYHPIRNRFKN-IRNIPYKNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRFT  390 (795)
T ss_dssp             EEEEEECTTSCEEEEESSSCEEEECGGGGSSEE-ECCCTTSSSCSCSSEEEEEECTTSCEEEEESSSCEEEECTTTCCEE
T ss_pred             EEEEEEeCCcCEEEEECCCCeEEeCCCcccceE-EcCCCCCCCCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcEE
Confidence            355555    55566677778899876554322 211       2356889999988876554433344         11


Q ss_pred             --e----------cCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee-------cCCceEEEEecCCCccc---
Q 046394          148 --C----------HQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL-------PGHAKTLDFSRKDSGDF---  205 (378)
Q Consensus       148 --~----------h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~-------~~~i~~~~~sp~g~~~~---  205 (378)
                        .          ....|.++...++|+.|..|+.++-|.+||..+++...-.       ...|.++...++|..-+   
T Consensus       391 ~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~  470 (795)
T 4a2l_A          391 SYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL  470 (795)
T ss_dssp             EECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES
T ss_pred             EEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec
Confidence              0          1356889999899985667777778999999876643321       24577777777776422   


Q ss_pred             -----cCCCCCceEEEeec------cCCcceeeeEEcCCCCeEEEecCCCeE
Q 046394          206 -----SGSHNYNRYMGYSM------VKGYQIGKVSFRPYEDVLGIGHSMGVS  246 (378)
Q Consensus       206 -----~~~~~~~~~~~~~~------~~~~~v~~~~~sp~g~~l~~~~~~g~~  246 (378)
                           ++..+.. +..+..      .....|.++...++|.+.+.+. .|..
T Consensus       471 ~Gl~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~Gl~  520 (795)
T 4a2l_A          471 SALVRFNPEQRS-FTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-EGLS  520 (795)
T ss_dssp             SCEEEEETTTTE-EEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-SCEE
T ss_pred             CceeEEeCCCCe-EEEccccccccccCCceEEEEEECCCCCEEEEeC-CceE
Confidence                 1211111 111110      0235688888888887766554 5643

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=97.80  E-value=0.034  Score=54.82  Aligned_cols=223  Identities=10%  Similarity=-0.031  Sum_probs=127.2

Q ss_pred             eEEEeccceeeeeecccceeeEEe-ecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEeeccC---------CC
Q 046394           18 TWRIKQEAIAREVDILSSRNQYDI-MLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTELHCSKEH---------GE   87 (378)
Q Consensus        18 ~~~~~~~~~i~~~d~~~~~~~~~l-~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~---------~~   87 (378)
                      .+.....+-+..||..+++..... ..+...|.++...++|.+ ..|+.++-+.+||........+...         ..
T Consensus       186 lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~l-wigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~  264 (795)
T 4a2l_A          186 IYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTRI-WVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNY  264 (795)
T ss_dssp             EEEEESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTEE-EEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSB
T ss_pred             EEEEECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCCE-EEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCe
Confidence            333333334666776555432211 123456888888887764 4455444599999766555444321         12


Q ss_pred             eeEEEE----EEEEEeCCCeEEEEEcCCCcEEEEEec-------CCCCeeEEEEcCCCCEEEEEcCCCe---------e-
Q 046394           88 VLKLQF----LLASINKLGQLRYQNVTMGEIVGNFWT-------GLGRTDVIRVNPFNGVVSLGHSGGT---------M-  146 (378)
Q Consensus        88 ~~~l~~----~l~s~~~d~~i~iwd~~~~~~~~~~~~-------~~~~v~~~~~s~~~~~l~~~~~d~~---------~-  146 (378)
                      +.++..    .+..|+.+ -|.+||..++........       ....|.++...++|.+.+.....|.         + 
T Consensus       265 i~~i~~d~~g~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~  343 (795)
T 4a2l_A          265 IRSLAMDSQNRLWIGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNRFK  343 (795)
T ss_dssp             EEEEEECTTSCEEEEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEEEEESSSCEEEECGGGGSSE
T ss_pred             EEEEEEcCCCCEEEEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEEEEECCCCeEEeCCCcccce
Confidence            355555    44444455 588999877664433211       2356899999999886655544554         1 


Q ss_pred             -ee--------cCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeee----------e-cCCceEEEEecCCC-ccc
Q 046394          147 -LC--------HQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQT----------L-PGHAKTLDFSRKDS-GDF  205 (378)
Q Consensus       147 -~~--------h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~----------~-~~~i~~~~~sp~g~-~~~  205 (378)
                       ..        ....|.++...++|++ ..|+.++-|..||..++.....          + ...|.++...++|. .-+
T Consensus       344 ~~~~~~~~~~l~~~~V~~i~~d~~g~l-WiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWi  422 (795)
T 4a2l_A          344 NIRNIPYKNSLSDNVVSCIVEDKDKNL-WIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYI  422 (795)
T ss_dssp             EECCCTTSSSCSCSSEEEEEECTTSCE-EEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEE
T ss_pred             EEcCCCCCCCCCCCeeEEEEECCCCCE-EEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEE
Confidence             11        1345899999888874 4567776799999877654322          2 24577888777776 322


Q ss_pred             ---------cCCCCCceEEEeec----cCCcceeeeEEcCCCCeEEEecCCCe
Q 046394          206 ---------SGSHNYNRYMGYSM----VKGYQIGKVSFRPYEDVLGIGHSMGV  245 (378)
Q Consensus       206 ---------~~~~~~~~~~~~~~----~~~~~v~~~~~sp~g~~l~~~~~~g~  245 (378)
                               ++..+.. +..+..    .....|.++...++|.+.+.+. +|.
T Consensus       423 gt~~~Gl~~~d~~~~~-~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-~Gl  473 (795)
T 4a2l_A          423 GTHAGGLSILHRNSGQ-VENFNQRNSQLVNENVYAILPDGEGNLWLGTL-SAL  473 (795)
T ss_dssp             EETTTEEEEEETTTCC-EEEECTTTSCCSCSCEEEEEECSSSCEEEEES-SCE
T ss_pred             EeCcCceeEEeCCCCc-EEEeecCCCCcCCCeeEEEEECCCCCEEEEec-Cce
Confidence                     1111111 111110    0234688888888887665554 554

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=97.78  E-value=0.0071  Score=52.09  Aligned_cols=153  Identities=13%  Similarity=0.049  Sum_probs=82.8

Q ss_pred             ccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCC--cEEEEeC-CCCeEEeeccC--CC-eeEEEE---
Q 046394           23 QEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKG--YPYFYNR-DGTELHCSKEH--GE-VLKLQF---   93 (378)
Q Consensus        23 ~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg--~i~iwd~-~~~~~~~~~~~--~~-~~~l~~---   93 (378)
                      ..+.|..||..... ...+.. ...+.+++++++|+++++.....  .|..+|. ++.. ..+...  .. ...++.   
T Consensus        51 ~~~~I~~~d~~g~~-~~~~~~-~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~-~~~~~~~~~~~~~g~~~~~~  127 (306)
T 2p4o_A           51 EVGEIVSITPDGNQ-QIHATV-EGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTV-ETLLTLPDAIFLNGITPLSD  127 (306)
T ss_dssp             TTTEEEEECTTCCE-EEEEEC-SSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCE-EEEEECTTCSCEEEEEESSS
T ss_pred             CCCeEEEECCCCce-EEEEeC-CCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeE-EEEEeCCCccccCcccccCC
Confidence            35667777765432 222222 34688999999999655543322  4777774 4443 322211  11 244443   


Q ss_pred             --EEEEEeCCCeEEEEEcCCCcE-EEEEe---------cCCCCeeEEEEcCCCCEEEEEcCC-Ce---eeec--------
Q 046394           94 --LLASINKLGQLRYQNVTMGEI-VGNFW---------TGLGRTDVIRVNPFNGVVSLGHSG-GT---MLCH--------  149 (378)
Q Consensus        94 --~l~s~~~d~~i~iwd~~~~~~-~~~~~---------~~~~~v~~~~~s~~~~~l~~~~~d-~~---~~~h--------  149 (378)
                        .+++...++.|..+|..++.. +....         ......+.+  +|++..|+++... +.   +...        
T Consensus       128 ~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~  205 (306)
T 2p4o_A          128 TQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEP  205 (306)
T ss_dssp             SEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCC
T ss_pred             CcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCcc
Confidence              344544688999999876532 21111         111234555  7888766655433 22   1100        


Q ss_pred             -----CCCEEEEEEecCCCEEEEEECCCeEEEEEcC
Q 046394          150 -----QGPVSALAFHPNGHLMATSGKDCKIKIWDLR  180 (378)
Q Consensus       150 -----~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~  180 (378)
                           ......++++++|+++++....+.|.++|..
T Consensus       206 ~~~~~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~  241 (306)
T 2p4o_A          206 EIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD  241 (306)
T ss_dssp             EEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTT
T ss_pred             EEEeccCCCCCeEECCCCCEEEEeCCCCeEEEECCC
Confidence                 0123456777888776666666777777753

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.78  E-value=0.032  Score=54.66  Aligned_cols=163  Identities=10%  Similarity=-0.011  Sum_probs=98.6

Q ss_pred             eEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEe-CCCcEEEEeCCCC-----eEEeec-cCCCeeE
Q 046394           18 TWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAG-CKGYPYFYNRDGT-----ELHCSK-EHGEVLK   90 (378)
Q Consensus        18 ~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~-~dg~i~iwd~~~~-----~~~~~~-~~~~~~~   90 (378)
                      .+.+.....|+..++....... +......+.+|+|++.+..|+.+. ..+.|+.+++.+.     ....+. ....+..
T Consensus       397 ~Ll~an~~~Ir~i~l~~~~~~~-l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~G  475 (791)
T 3m0c_C          397 YLFFTNRHEVRKMTLDRSEYTS-LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG  475 (791)
T ss_dssp             EEEEECBSSEEEECTTSCCCEE-EECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCE
T ss_pred             ccccccccceeEeeccCCccee-eecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcce
Confidence            4445556667777776554333 333346788999998666665554 4677888887653     223333 2223345


Q ss_pred             EEE------EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCC--Ce--------------eee
Q 046394           91 LQF------LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSG--GT--------------MLC  148 (378)
Q Consensus        91 l~~------~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--~~--------------~~~  148 (378)
                      |++      ++++-...+.|.+.++........+.........|+++|.+..|+.+...  +.              +..
T Consensus       476 LAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~  555 (791)
T 3m0c_C          476 LAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTE  555 (791)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECS
T ss_pred             eeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeC
Confidence            555      66666678899999987544433444445678899999986655554322  22              111


Q ss_pred             cCCCEEEEEEecCCCEEEEE-ECCCeEEEEEcCC
Q 046394          149 HQGPVSALAFHPNGHLMATS-GKDCKIKIWDLRK  181 (378)
Q Consensus       149 h~~~v~~~~~sp~g~~l~t~-~~d~~i~iwd~~~  181 (378)
                      .-.....|++++.+..|..+ ...+.|..+|+..
T Consensus       556 ~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG  589 (791)
T 3m0c_C          556 NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG  589 (791)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CCCCceEEEEecCCCeEEEEeCCCCcEEEEecCC
Confidence            22467889999765555544 4556888888854

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=97.77  E-value=0.026  Score=53.43  Aligned_cols=103  Identities=11%  Similarity=-0.056  Sum_probs=66.5

Q ss_pred             eeeEEEeccceeeeeecccceeeEEeecCCCCc---------eEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeeccC
Q 046394           16 EKTWRIKQEAIAREVDILSSRNQYDIMLPELGP---------YTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKEH   85 (378)
Q Consensus        16 ~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v---------~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~   85 (378)
                      +..|.....+.+..+|..+++.+..+.......         ..+++  .+..+++++.++.|..+| .+|+.+......
T Consensus        69 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~  146 (582)
T 1flg_A           69 GVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGKVVWKKKFA  146 (582)
T ss_dssp             TEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCCEEEEEECS
T ss_pred             CEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE--ECCEEEEEeCCCEEEEEECCCCCEEeeecCC
Confidence            345555553458999999999998887653211         12222  245788888999999999 578888765433


Q ss_pred             C-----Ce-eE-EEE--------EEEEEe------CCCeEEEEEcCCCcEEEEEec
Q 046394           86 G-----EV-LK-LQF--------LLASIN------KLGQLRYQNVTMGEIVGNFWT  120 (378)
Q Consensus        86 ~-----~~-~~-l~~--------~l~s~~------~d~~i~iwd~~~~~~~~~~~~  120 (378)
                      .     .. .. +..        .+++++      .++.|..+|..+|+.+.....
T Consensus       147 ~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~  202 (582)
T 1flg_A          147 DHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPF  202 (582)
T ss_dssp             CGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEES
T ss_pred             CCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCC
Confidence            2     11 11 111        233333      378999999999998877653

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=97.72  E-value=0.025  Score=55.65  Aligned_cols=185  Identities=10%  Similarity=0.023  Sum_probs=112.4

Q ss_pred             ceeeEEEeccceeeeeecccceeeEEe---ecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEeecc----CCC
Q 046394           15 VEKTWRIKQEAIAREVDILSSRNQYDI---MLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTELHCSKE----HGE   87 (378)
Q Consensus        15 ~~~~~~~~~~~~i~~~d~~~~~~~~~l---~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~~~----~~~   87 (378)
                      ....+....++-+..+|..++....-.   ......|.++...++|.+ .+|+.++-|..+|........+..    ...
T Consensus       373 ~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~l-Wigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~  451 (781)
T 3v9f_A          373 QGKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNL-WFGTYLGNISYYNTRLKKFQIIELEKNELLD  451 (781)
T ss_dssp             TSCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCE-EEEETTEEEEEECSSSCEEEECCSTTTCCCC
T ss_pred             CCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCE-EEEeccCCEEEEcCCCCcEEEeccCCCCCCe
Confidence            344554444455677776654322111   223456889998888864 446666679999966555554432    122


Q ss_pred             eeEEEE----EEEEEeCCCeEEEEEcCCCcEEEEEecC-----CCCeeEEEEcCCCCEEEEEcCCCe---------eee-
Q 046394           88 VLKLQF----LLASINKLGQLRYQNVTMGEIVGNFWTG-----LGRTDVIRVNPFNGVVSLGHSGGT---------MLC-  148 (378)
Q Consensus        88 ~~~l~~----~l~s~~~d~~i~iwd~~~~~~~~~~~~~-----~~~v~~~~~s~~~~~l~~~~~d~~---------~~~-  148 (378)
                      +.++..    .+..|+. +-|..||..+++........     ...|.++...++|.+.+.....|.         +.. 
T Consensus       452 v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~  530 (781)
T 3v9f_A          452 VRVFYEDKNKKIWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGGVGIYTPDMQLVRKF  530 (781)
T ss_dssp             EEEEEECTTSEEEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSCEEEECTTCCEEEEE
T ss_pred             EEEEEECCCCCEEEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCCEEEEeCCCCeEEEc
Confidence            355555    4444555 55889998876644332222     357889999999887665554554         110 


Q ss_pred             ------cCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee-------cCCceEEEEecCCCc
Q 046394          149 ------HQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL-------PGHAKTLDFSRKDSG  203 (378)
Q Consensus       149 ------h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~-------~~~i~~~~~sp~g~~  203 (378)
                            ....|.++...++|++.++. .+|.|..||..+++. ..+       ...+.++...++|..
T Consensus       531 ~~~~~l~~~~i~~i~~d~~g~lWi~T-~~Glv~~~d~~~~~~-~~~~~~~gl~~~~i~~i~~d~~g~l  596 (781)
T 3v9f_A          531 NQYEGFCSNTINQIYRSSKGQMWLAT-GEGLVCFPSARNFDY-QVFQRKEGLPNTHIRAISEDKNGNI  596 (781)
T ss_dssp             CTTTTCSCSCEEEEEECTTSCEEEEE-TTEEEEESCTTTCCC-EEECGGGTCSCCCCCEEEECSSSCE
T ss_pred             cCCCCCCCCeeEEEEECCCCCEEEEE-CCCceEEECCCCCcE-EEccccCCCCCceEEEEEECCCCCE
Confidence                  13468899988888765544 466558899877653 222       235778888888765

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.72  E-value=0.024  Score=50.87  Aligned_cols=165  Identities=11%  Similarity=-0.025  Sum_probs=103.4

Q ss_pred             eeeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEe-CCCcEEEEeCCCC-----eEEeec-cCCCe
Q 046394           16 EKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAG-CKGYPYFYNRDGT-----ELHCSK-EHGEV   88 (378)
Q Consensus        16 ~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~-~dg~i~iwd~~~~-----~~~~~~-~~~~~   88 (378)
                      .-.+.+.....|+..++........+. ....+..|+|++.+..|+.+. ..+.|+.++.++.     ....+. ....+
T Consensus        83 ~~~ll~~~~~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p  161 (400)
T 3p5b_L           83 IAYLFFTNRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP  161 (400)
T ss_dssp             SCEEEEEETTEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCE
T ss_pred             cceeEEeccceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCc
Confidence            345556667888888887665443333 346788999999776666664 4678888987652     222232 22234


Q ss_pred             eEEEE------EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCC--Ce-------------e-
Q 046394           89 LKLQF------LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSG--GT-------------M-  146 (378)
Q Consensus        89 ~~l~~------~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--~~-------------~-  146 (378)
                      ..+++      ++++-...+.|.+.++........+.........|+++|.+..|+.+...  +.             + 
T Consensus       162 ~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~  241 (400)
T 3p5b_L          162 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV  241 (400)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEE
T ss_pred             ccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEE
Confidence            55555      55566667889999987555444444455668899999976655554321  11             1 


Q ss_pred             eecCCCEEEEEEecCCCEEEEE-ECCCeEEEEEcCC
Q 046394          147 LCHQGPVSALAFHPNGHLMATS-GKDCKIKIWDLRK  181 (378)
Q Consensus       147 ~~h~~~v~~~~~sp~g~~l~t~-~~d~~i~iwd~~~  181 (378)
                      ...-.....|+++|++..|..+ +..+.|..+|+..
T Consensus       242 ~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG  277 (400)
T 3p5b_L          242 TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG  277 (400)
T ss_dssp             CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             ECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCC
Confidence            1122456889999866665554 4567888888754

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=97.70  E-value=0.046  Score=53.71  Aligned_cols=227  Identities=6%  Similarity=-0.107  Sum_probs=124.6

Q ss_pred             eeeEEEeccceeeeeecccceeeEEe-------ecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEeecc----
Q 046394           16 EKTWRIKQEAIAREVDILSSRNQYDI-------MLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTELHCSKE----   84 (378)
Q Consensus        16 ~~~~~~~~~~~i~~~d~~~~~~~~~l-------~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~~~----   84 (378)
                      ...+..... -+..||..++....-.       ......|.++...++|. |..|+..+-|.++|........+..    
T Consensus       222 g~lwigt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~  299 (781)
T 3v9f_A          222 GNIWIGTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLPEQIRFE  299 (781)
T ss_dssp             CCEEEEETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETTCC---------CE
T ss_pred             CCEEEEeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeeeeccccc
Confidence            334444443 5667776655432111       11235688999988885 5556664568999965544332221    


Q ss_pred             ------------CCCeeEEEE----EEEEEeCCCeEEEEEcCCCcEEEEEe---------cCCCCeeEEEEcCCCCEEEE
Q 046394           85 ------------HGEVLKLQF----LLASINKLGQLRYQNVTMGEIVGNFW---------TGLGRTDVIRVNPFNGVVSL  139 (378)
Q Consensus        85 ------------~~~~~~l~~----~l~s~~~d~~i~iwd~~~~~~~~~~~---------~~~~~v~~~~~s~~~~~l~~  139 (378)
                                  ...+.++..    .|-.|+.++-|..++..++.......         .....|.++...++|.+.+.
T Consensus       300 ~~~~~~~~~~l~~~~v~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWig  379 (781)
T 3v9f_A          300 FIREGDNNYSLSNASARYIFQDSFNNIWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWIG  379 (781)
T ss_dssp             EECBCSSTTSBSSSCEEEEEECSSCCEEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEEEE
T ss_pred             cccCCCCCCCCCCCeEEEEEEeCCCCEEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEEEE
Confidence                        112355555    55556666778888887654322210         12356889998888876554


Q ss_pred             EcCCCe---------ee-------ecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee-----cCCceEEEEe
Q 046394          140 GHSGGT---------ML-------CHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL-----PGHAKTLDFS  198 (378)
Q Consensus       140 ~~~d~~---------~~-------~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~-----~~~i~~~~~s  198 (378)
                      ....|.         +.       .....|.++...++|++.+ |+.++.|..||..+++.....     ...|.++...
T Consensus       380 t~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d  458 (781)
T 3v9f_A          380 TDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYED  458 (781)
T ss_dssp             EBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEEC
T ss_pred             eCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEEC
Confidence            434454         11       1235688888888887544 666677899998776543221     2456777777


Q ss_pred             cCCCccc--------cCCCCCceEEEeec----cCCcceeeeEEcCCCCeEEEecCCCe
Q 046394          199 RKDSGDF--------SGSHNYNRYMGYSM----VKGYQIGKVSFRPYEDVLGIGHSMGV  245 (378)
Q Consensus       199 p~g~~~~--------~~~~~~~~~~~~~~----~~~~~v~~~~~sp~g~~l~~~~~~g~  245 (378)
                      ++|..-+        ++..+.........    .....|.++...++|.+.+.+...|+
T Consensus       459 ~~g~lwigt~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl  517 (781)
T 3v9f_A          459 KNKKIWIGTHAGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGGV  517 (781)
T ss_dssp             TTSEEEEEETTEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSCE
T ss_pred             CCCCEEEEECCceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCCE
Confidence            6665321        11111111111111    01346888888888877666554554

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.69  E-value=0.0084  Score=54.48  Aligned_cols=125  Identities=11%  Similarity=0.044  Sum_probs=70.0

Q ss_pred             eeeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCC-----cEEEEeCCCCeE--EeeccCCCe
Q 046394           16 EKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKG-----YPYFYNRDGTEL--HCSKEHGEV   88 (378)
Q Consensus        16 ~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg-----~i~iwd~~~~~~--~~~~~~~~~   88 (378)
                      ...|.....+.|+.+|+.++.... +......+.+++|+++|+ |+++...+     .+...+..+...  ..+.....+
T Consensus       153 g~Lyv~D~~~~I~~id~~~g~v~~-~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~~~~~P  230 (433)
T 4hw6_A          153 DDLYWVGQRDAFRHVDFVNQYVDI-KTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASGFTERLSLCNARGA  230 (433)
T ss_dssp             CEEEEECBTSCEEEEETTTTEEEE-ECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGTTCCEEEEEECSSB
T ss_pred             CEEEEEeCCCCEEEEECCCCEEEE-eecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCCeeccccccccCCC
Confidence            334433333678888887766543 333345689999999999 55554322     233344222111  122222233


Q ss_pred             eEEEE------EEEEEeCCCeEEEEEcCCCcEEEEE-ecC-CCCeeEEEEcCCCCEEEEEcC
Q 046394           89 LKLQF------LLASINKLGQLRYQNVTMGEIVGNF-WTG-LGRTDVIRVNPFNGVVSLGHS  142 (378)
Q Consensus        89 ~~l~~------~l~s~~~d~~i~iwd~~~~~~~~~~-~~~-~~~v~~~~~s~~~~~l~~~~~  142 (378)
                      ..+++      ++++-..++.|+.+|..++.....+ ... ......++|+|+++.|+++..
T Consensus       231 ~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~  292 (433)
T 4hw6_A          231 KTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYN  292 (433)
T ss_dssp             CCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEET
T ss_pred             CEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeC
Confidence            45555      4555556788999998877663332 222 222346999999986655543

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.66  E-value=0.0056  Score=58.00  Aligned_cols=96  Identities=8%  Similarity=0.016  Sum_probs=67.0

Q ss_pred             cceeeeeecccceeeEEeecCCCC-------------------------------------c-eEEEEcCCCCEEEEEeC
Q 046394           24 EAIAREVDILSSRNQYDIMLPELG-------------------------------------P-YTLDFTSSGRYMAAAGC   65 (378)
Q Consensus        24 ~~~i~~~d~~~~~~~~~l~~~~~~-------------------------------------v-~~~~~sp~g~~l~~~~~   65 (378)
                      ++.|..+|..+++.+..+......                                     + ..+++.+....++.+..
T Consensus       181 ~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g  260 (599)
T 1w6s_A          181 RGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTG  260 (599)
T ss_dssp             CCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECC
T ss_pred             CCeEEEEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCC
Confidence            689999999999998887653211                                     1 14566677778887766


Q ss_pred             CC----------------cEEEEe-CCCCeEEeeccCCC----------e--eEEE-------EEEEEEeCCCeEEEEEc
Q 046394           66 KG----------------YPYFYN-RDGTELHCSKEHGE----------V--LKLQ-------FLLASINKLGQLRYQNV  109 (378)
Q Consensus        66 dg----------------~i~iwd-~~~~~~~~~~~~~~----------~--~~l~-------~~l~s~~~d~~i~iwd~  109 (378)
                      ++                .|..+| .+|..+..++....          +  ..+.       -.++.++.+|.++++|.
T Consensus       261 ~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~  340 (599)
T 1w6s_A          261 NPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDR  340 (599)
T ss_dssp             CCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEET
T ss_pred             CCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEEC
Confidence            53                788899 56777766654321          1  1111       14667889999999999


Q ss_pred             CCCcEEEEEe
Q 046394          110 TMGEIVGNFW  119 (378)
Q Consensus       110 ~~~~~~~~~~  119 (378)
                      .+|+.+....
T Consensus       341 ~tG~~lw~~~  350 (599)
T 1w6s_A          341 TDGALVSANK  350 (599)
T ss_dssp             TTCCEEEEEE
T ss_pred             CCCCEeeccc
Confidence            9999887765

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.60  E-value=0.029  Score=48.58  Aligned_cols=163  Identities=13%  Similarity=-0.012  Sum_probs=95.1

Q ss_pred             eEEEeccceeeeeeccccee--eEEeecCCCCceEEEEcCCCCEEEEE-eCCCcEEEEeCCCCe--EEeec-cCCCeeEE
Q 046394           18 TWRIKQEAIAREVDILSSRN--QYDIMLPELGPYTLDFTSSGRYMAAA-GCKGYPYFYNRDGTE--LHCSK-EHGEVLKL   91 (378)
Q Consensus        18 ~~~~~~~~~i~~~d~~~~~~--~~~l~~~~~~v~~~~~sp~g~~l~~~-~~dg~i~iwd~~~~~--~~~~~-~~~~~~~l   91 (378)
                      .+.+.....|+.+++.....  ...+.. -..+.+++|++.+..|+.+ ...+.|..++.++..  ...+. +-..+..+
T Consensus         6 ~ll~~~~~~I~~i~l~~~~~~~~~~~~~-~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~gl   84 (318)
T 3sov_A            6 LLLYANRRDLRLVDATNGKENATIVVGG-LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGL   84 (318)
T ss_dssp             EEEEECEEEEEEEETTCTTSCCEEEEEE-EEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEE
T ss_pred             EEEEEccCeEEEEECCCCceEEEEEecC-CCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEE
Confidence            34455566778888876531  122222 2356799999866566555 446789999976642  12222 22233445


Q ss_pred             EE------EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcC--CCe-------------e-eec
Q 046394           92 QF------LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHS--GGT-------------M-LCH  149 (378)
Q Consensus        92 ~~------~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--d~~-------------~-~~h  149 (378)
                      ++      ++++-...+.|.++++........+.........++++|.+..|+.+..  .+.             + ...
T Consensus        85 avd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~  164 (318)
T 3sov_A           85 ACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSE  164 (318)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSS
T ss_pred             EEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECC
Confidence            54      5556566788999998644333333344566788999987665555442  122             1 111


Q ss_pred             CCCEEEEEEecCCCEEE-EEECCCeEEEEEcCC
Q 046394          150 QGPVSALAFHPNGHLMA-TSGKDCKIKIWDLRK  181 (378)
Q Consensus       150 ~~~v~~~~~sp~g~~l~-t~~~d~~i~iwd~~~  181 (378)
                      -.....|+|+|++..|. +-+..+.|..+|+..
T Consensus       165 l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG  197 (318)
T 3sov_A          165 IYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDG  197 (318)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CCCccEEEEeccCCEEEEEECCCCEEEEEcCCC
Confidence            23457889998655554 444567888888753

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=97.58  E-value=0.031  Score=48.35  Aligned_cols=120  Identities=12%  Similarity=0.016  Sum_probs=70.5

Q ss_pred             EEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEe-CCCcEEEEeCCC----CeEEe-eccC-CCeeEE
Q 046394           19 WRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAG-CKGYPYFYNRDG----TELHC-SKEH-GEVLKL   91 (378)
Q Consensus        19 ~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~-~dg~i~iwd~~~----~~~~~-~~~~-~~~~~l   91 (378)
                      +.+.+...|+..|+.+......+.. ...+.+++|++.+..|+.+. ..+.|..++..+    ..... +... ..+..+
T Consensus         4 ll~~~~~~I~~i~~~~~~~~~~~~~-~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~gl   82 (316)
T 1ijq_A            4 LFFTNRHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGL   82 (316)
T ss_dssp             EEEECBSSEEEEETTSCCCEEEECS-CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEE
T ss_pred             EEEECCCeEEEEECCCcceEehhcC-CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEE
Confidence            4455566778888887665444433 36788999999776666554 467899999765    22222 3222 234555


Q ss_pred             EE------EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEE
Q 046394           92 QF------LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSL  139 (378)
Q Consensus        92 ~~------~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  139 (378)
                      ++      ++++-...+.|.++|+........+.........++++|.+..|+.
T Consensus        83 avd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~  136 (316)
T 1ijq_A           83 AVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYW  136 (316)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEE
T ss_pred             EEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEE
Confidence            54      4555566788888888644333333333355667777765554433

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=97.56  E-value=0.033  Score=48.13  Aligned_cols=150  Identities=9%  Similarity=0.030  Sum_probs=81.9

Q ss_pred             eEEEeccceeeeeecccceee-EEeec------------------CCCCceEEEEcC-CCCEEEEEeCCCcEEEEeCCCC
Q 046394           18 TWRIKQEAIAREVDILSSRNQ-YDIML------------------PELGPYTLDFTS-SGRYMAAAGCKGYPYFYNRDGT   77 (378)
Q Consensus        18 ~~~~~~~~~i~~~d~~~~~~~-~~l~~------------------~~~~v~~~~~sp-~g~~l~~~~~dg~i~iwd~~~~   77 (378)
                      .|.-..++.|..||..++... +....                  ....+.++++++ +|+ |+++...+.|.++|..+.
T Consensus        33 l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v~d~~~~i~~~d~~~g  111 (322)
T 2fp8_A           33 FYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYIVDCYYHLSVVGSEGG  111 (322)
T ss_dssp             EEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEEEETTTEEEEECTTCE
T ss_pred             EEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCc-EEEEECCCCEEEEeCCCC
Confidence            454445677888887665332 21110                  013578999998 564 555555555888997654


Q ss_pred             eEEeeccC------CCeeEEEE------EEEEEeC-----------------CCeEEEEEcCCCcEEEEEecCCCCeeEE
Q 046394           78 ELHCSKEH------GEVLKLQF------LLASINK-----------------LGQLRYQNVTMGEIVGNFWTGLGRTDVI  128 (378)
Q Consensus        78 ~~~~~~~~------~~~~~l~~------~l~s~~~-----------------d~~i~iwd~~~~~~~~~~~~~~~~v~~~  128 (378)
                      .+..+...      ..+..+++      ++++...                 ++.|..||..+++..... ......+.+
T Consensus       112 ~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~-~~~~~p~gi  190 (322)
T 2fp8_A          112 HATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLL-KELHVPGGA  190 (322)
T ss_dssp             ECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEE-EEESCCCEE
T ss_pred             EEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEec-cCCccCcce
Confidence            44333211      11244544      2333211                 356777777666543222 122456789


Q ss_pred             EEcCCCCEEEEEc-CCCe---e-------------eecCCCEEEEEEecCCCEEEEEEC
Q 046394          129 RVNPFNGVVSLGH-SGGT---M-------------LCHQGPVSALAFHPNGHLMATSGK  170 (378)
Q Consensus       129 ~~s~~~~~l~~~~-~d~~---~-------------~~h~~~v~~~~~sp~g~~l~t~~~  170 (378)
                      +++|++..|+++. ..+.   +             ....+ ...+++.++|+++++...
T Consensus       191 a~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~  248 (322)
T 2fp8_A          191 EVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSE  248 (322)
T ss_dssp             EECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEE
T ss_pred             EECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecC
Confidence            9999998666553 3333   0             11112 566788888876666543

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=97.54  E-value=0.0025  Score=60.39  Aligned_cols=59  Identities=17%  Similarity=0.180  Sum_probs=40.9

Q ss_pred             ceeeeeecccceeeEEeec--CCC-------CceEEEEc-CCCC---EEEEEeCCCcEEEEe-CCCCeEEeec
Q 046394           25 AIAREVDILSSRNQYDIML--PEL-------GPYTLDFT-SSGR---YMAAAGCKGYPYFYN-RDGTELHCSK   83 (378)
Q Consensus        25 ~~i~~~d~~~~~~~~~l~~--~~~-------~v~~~~~s-p~g~---~l~~~~~dg~i~iwd-~~~~~~~~~~   83 (378)
                      +.|..+|..+++.+..+..  |..       .+.-+... .+|+   .++.++.+|.++++| .+|+.+..+.
T Consensus       291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~  363 (582)
T 1flg_A          291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFP  363 (582)
T ss_dssp             SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccc
Confidence            5788999999999988764  321       11122222 4674   788899999999999 6777765543

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.49  E-value=0.022  Score=49.46  Aligned_cols=161  Identities=14%  Similarity=0.178  Sum_probs=104.8

Q ss_pred             cceeeeeecccceeeEEeecCCCCceEEEEcCC----CC---EEEEEeC---CCcEEEEeC--CCCeEEeeccC------
Q 046394           24 EAIAREVDILSSRNQYDIMLPELGPYTLDFTSS----GR---YMAAAGC---KGYPYFYNR--DGTELHCSKEH------   85 (378)
Q Consensus        24 ~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~----g~---~l~~~~~---dg~i~iwd~--~~~~~~~~~~~------   85 (378)
                      .+-+.+||+ +++.+..+..  +.++.+..-|+    |.   ++++...   +++|.+|++  ....+..+...      
T Consensus        49 ~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~~~~~pv~t  125 (355)
T 3amr_A           49 KSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMTDPDHPIAT  125 (355)
T ss_dssp             TTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECSCTTSCEEC
T ss_pred             CCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeeccccccCcCC
Confidence            467999999 8888888764  46777766663    22   2333333   478999963  44456555221      


Q ss_pred             --CCeeEEEE---------EEEEEeCCCeEEEEEcC-------CCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe--
Q 046394           86 --GEVLKLQF---------LLASINKLGQLRYQNVT-------MGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT--  145 (378)
Q Consensus        86 --~~~~~l~~---------~l~s~~~d~~i~iwd~~-------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~--  145 (378)
                        ..+..+++         +++....+|.+..|++.       +.+.+++|... +.+..+...+....|+++-.+..  
T Consensus       126 ~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lg-sq~EgcvvDd~~g~Lyv~eEd~GIw  204 (355)
T 3amr_A          126 AINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMN-SQTEGMAADDEYGRLYIAEEDEAIW  204 (355)
T ss_dssp             CCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECS-SCEEEEEEETTTTEEEEEETTTEEE
T ss_pred             CCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCC-CCcceEEEcCCCCeEEEecccceEE
Confidence              23344444         57777788999999883       33567777654 57888899998888888777644  


Q ss_pred             -ee-----------------ec-CCCEEEEEEe--cCCC-EEEEEE-CCCeEEEEEcC-Cceeeeee
Q 046394          146 -ML-----------------CH-QGPVSALAFH--PNGH-LMATSG-KDCKIKIWDLR-KYEVLQTL  188 (378)
Q Consensus       146 -~~-----------------~h-~~~v~~~~~s--p~g~-~l~t~~-~d~~i~iwd~~-~~~~~~~~  188 (378)
                       +.                 ++ ...+..|++-  ++++ ||++++ .++++.+||.. +.+.+..|
T Consensus       205 ~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f  271 (355)
T 3amr_A          205 KFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADF  271 (355)
T ss_dssp             EEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEE
T ss_pred             EEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEE
Confidence             11                 11 1357788884  4555 555555 67799999996 56665555

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.27  E-value=0.14  Score=48.84  Aligned_cols=167  Identities=13%  Similarity=0.088  Sum_probs=105.6

Q ss_pred             eeeEEEeccceeeeeecccceeeEEeecC-CCCceEEEEcCCCCEEEEEe-CCCcEEEEeCCCCeEEeecc-C-CCeeEE
Q 046394           16 EKTWRIKQEAIAREVDILSSRNQYDIMLP-ELGPYTLDFTSSGRYMAAAG-CKGYPYFYNRDGTELHCSKE-H-GEVLKL   91 (378)
Q Consensus        16 ~~~~~~~~~~~i~~~d~~~~~~~~~l~~~-~~~v~~~~~sp~g~~l~~~~-~dg~i~iwd~~~~~~~~~~~-~-~~~~~l   91 (378)
                      +.++.+.+...|+..++.+......+... -..+.+|+|++.+..|+.+. .++.|..++.+|..+..+.. . ..+..+
T Consensus         6 ~~~Ll~s~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~Gl   85 (628)
T 4a0p_A            6 EAFLLFSRRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGM   85 (628)
T ss_dssp             CCEEEEEETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEE
T ss_pred             CcEEEEEeCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceE
Confidence            33455667778888888766543333322 24688999999777666554 47889999987754443322 2 234445


Q ss_pred             EE------EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcC-----------CCe----eeecC
Q 046394           92 QF------LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHS-----------GGT----MLCHQ  150 (378)
Q Consensus        92 ~~------~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-----------d~~----~~~h~  150 (378)
                      ++      ++++-...+.|.+.++........+.........|+++|....|+.+..           ||.    +...-
T Consensus        86 AvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~~~  165 (628)
T 4a0p_A           86 AVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPNV  165 (628)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSC
T ss_pred             EEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEECCC
Confidence            54      5566666788999998654332223344567889999996655554432           221    22234


Q ss_pred             CCEEEEEEecCCCEEEEE-ECCCeEEEEEcCCc
Q 046394          151 GPVSALAFHPNGHLMATS-GKDCKIKIWDLRKY  182 (378)
Q Consensus       151 ~~v~~~~~sp~g~~l~t~-~~d~~i~iwd~~~~  182 (378)
                      .....|++++++..|..+ ...+.|..+|+...
T Consensus       166 ~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~  198 (628)
T 4a0p_A          166 GRANGLTIDYAKRRLYWTDLDTNLIESSNMLGL  198 (628)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             CCcceEEEccccCEEEEEECCCCEEEEEcCCCC
Confidence            567899999976665544 45678999998653

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.24  E-value=0.032  Score=48.09  Aligned_cols=143  Identities=14%  Similarity=0.123  Sum_probs=91.7

Q ss_pred             EEeecCCCCceEEEEcCCCCEEEEEe-CCCcEEEEeCCCCe-EE-eeccCC-----C--eeEEEE--------EEEEEe-
Q 046394           39 YDIMLPELGPYTLDFTSSGRYMAAAG-CKGYPYFYNRDGTE-LH-CSKEHG-----E--VLKLQF--------LLASIN-   99 (378)
Q Consensus        39 ~~l~~~~~~v~~~~~sp~g~~l~~~~-~dg~i~iwd~~~~~-~~-~~~~~~-----~--~~~l~~--------~l~s~~-   99 (378)
                      ..+.....-+-+++|++....|..++ ..|.|..||..+.. .. .+.+-.     .  +..+.|        ++++.. 
T Consensus         6 i~~~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~   85 (334)
T 2p9w_A            6 IDVKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKN   85 (334)
T ss_dssp             EEECCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEE
T ss_pred             EEecCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcc
Confidence            34445445566999988666666665 68999999976432 22 222211     1  244555        344332 


Q ss_pred             ------------CCCeEEEEEcC---CCcEEEEEec-------------CCCCeeEEEEcCCCCEEEEEcCC-Ce-----
Q 046394          100 ------------KLGQLRYQNVT---MGEIVGNFWT-------------GLGRTDVIRVNPFNGVVSLGHSG-GT-----  145 (378)
Q Consensus       100 ------------~d~~i~iwd~~---~~~~~~~~~~-------------~~~~v~~~~~s~~~~~l~~~~~d-~~-----  145 (378)
                                  .+..|..+|+.   +++.+.....             ....++.++..++|+..++++.. +.     
T Consensus        86 ~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~  165 (334)
T 2p9w_A           86 AKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVS  165 (334)
T ss_dssp             TTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEEC
T ss_pred             cccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEe
Confidence                        26779999998   7877655542             11347889999999988877665 44     


Q ss_pred             --------eeec------CCCEEEEEEecCCCEEEEEECCCeEEEEEcCC
Q 046394          146 --------MLCH------QGPVSALAFHPNGHLMATSGKDCKIKIWDLRK  181 (378)
Q Consensus       146 --------~~~h------~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~  181 (378)
                              +...      ....+.|+++|+|+.|++....+.|..+|+.+
T Consensus       166 pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~  215 (334)
T 2p9w_A          166 ADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK  215 (334)
T ss_dssp             TTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred             CCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence                    1001      11245788999998888777788888888763

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.20  E-value=0.094  Score=45.58  Aligned_cols=160  Identities=12%  Similarity=0.111  Sum_probs=96.5

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCeEEeeccCCCeeEEEE-------------EEEEEeC--CCeEEEEEcC--CCcEEEEE
Q 046394           56 SGRYMAAAGCKGYPYFYNRDGTELHCSKEHGEVLKLQF-------------LLASINK--LGQLRYQNVT--MGEIVGNF  118 (378)
Q Consensus        56 ~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~l~~-------------~l~s~~~--d~~i~iwd~~--~~~~~~~~  118 (378)
                      ...+++.....+-+.+||++|+.+..+.. ...+.+..             .+++.-.  +++|.+|++.  ++. +..+
T Consensus        39 ~~s~ii~t~k~~gL~Vydl~G~~l~~~~~-g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~~i  116 (355)
T 3amr_A           39 QNSKLITTNKKSGLVVYSLDGKMLHSYNT-GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQSM  116 (355)
T ss_dssp             GGCEEEEEETTTEEEEEETTSCEEEEECC-SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EEEC
T ss_pred             CccEEEEEcCCCCEEEEcCCCcEEEEccC-CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-eeec
Confidence            34566666677889999999999998865 22333333             2344444  6899999773  333 4444


Q ss_pred             ec-------CCCCeeEEEE--cCC-CC-EEEEEcCCCe--------------------eeecCCCEEEEEEecCCCEEEE
Q 046394          119 WT-------GLGRTDVIRV--NPF-NG-VVSLGHSGGT--------------------MLCHQGPVSALAFHPNGHLMAT  167 (378)
Q Consensus       119 ~~-------~~~~v~~~~~--s~~-~~-~l~~~~~d~~--------------------~~~h~~~v~~~~~sp~g~~l~t  167 (378)
                      ..       ....+..+|+  +|. +. ++++...+|.                    .....+.+..|...+....|..
T Consensus       117 ~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~Lyv  196 (355)
T 3amr_A          117 TDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGRLYI  196 (355)
T ss_dssp             SCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTEEEE
T ss_pred             cccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCeEEE
Confidence            21       1145666777  775 43 5666666666                    1122456778888888888999


Q ss_pred             EECCCeEEEEEcC-----Cceeeeee-----cCCceEEEE--ecCCC-ccccCCCCCceEEEe
Q 046394          168 SGKDCKIKIWDLR-----KYEVLQTL-----PGHAKTLDF--SRKDS-GDFSGSHNYNRYMGY  217 (378)
Q Consensus       168 ~~~d~~i~iwd~~-----~~~~~~~~-----~~~i~~~~~--sp~g~-~~~~~~~~~~~~~~~  217 (378)
                      +-.+..|..+|..     +++.+..+     ...+..|++  .++|. +.+........+..+
T Consensus       197 ~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vy  259 (355)
T 3amr_A          197 AEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIY  259 (355)
T ss_dssp             EETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEE
T ss_pred             ecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEE
Confidence            9988777777754     34455444     235566666  44554 333333333334444

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.14  E-value=0.11  Score=44.99  Aligned_cols=142  Identities=11%  Similarity=-0.047  Sum_probs=87.2

Q ss_pred             CCceEEEEcCCCCEEEE-EeCCCcEEEEeCCCCeEEeec--cCCCeeEEEE-----E-EEEE-eCCCeEEEEEcCCCcEE
Q 046394           46 LGPYTLDFTSSGRYMAA-AGCKGYPYFYNRDGTELHCSK--EHGEVLKLQF-----L-LASI-NKLGQLRYQNVTMGEIV  115 (378)
Q Consensus        46 ~~v~~~~~sp~g~~l~~-~~~dg~i~iwd~~~~~~~~~~--~~~~~~~l~~-----~-l~s~-~~d~~i~iwd~~~~~~~  115 (378)
                      ..+.++++.+.+..|+. -...+.|.+++.+|.....+.  ....+..+++     . +.+- +..+.|...++......
T Consensus        79 ~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~  158 (318)
T 3sov_A           79 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRF  158 (318)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCE
T ss_pred             CCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeE
Confidence            35668899875555544 445678999998876555443  2233577776     3 3333 23578888887533222


Q ss_pred             EEEecCCCCeeEEEEcCCCCEEEEEcCCCe---------------eeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcC
Q 046394          116 GNFWTGLGRTDVIRVNPFNGVVSLGHSGGT---------------MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLR  180 (378)
Q Consensus       116 ~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~---------------~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~  180 (378)
                      ..+...-...+.|+++|++..|+.+.....               ..+.......+++.. +.++.+-...+.|..+|..
T Consensus       159 ~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~  237 (318)
T 3sov_A          159 IIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE-DILYWTDWSTHSILACNKY  237 (318)
T ss_dssp             EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEET-TEEEEEETTTTEEEEEETT
T ss_pred             EEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeC-CEEEEEecCCCeEEEEECC
Confidence            222233456789999998776665543222               111234456677753 3455666667889999988


Q ss_pred             Cceeeeee
Q 046394          181 KYEVLQTL  188 (378)
Q Consensus       181 ~~~~~~~~  188 (378)
                      +++....+
T Consensus       238 ~G~~~~~i  245 (318)
T 3sov_A          238 TGEGLREI  245 (318)
T ss_dssp             TCCSCEEE
T ss_pred             CCCceEEE
Confidence            88776666

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.11  E-value=0.024  Score=55.42  Aligned_cols=65  Identities=8%  Similarity=-0.027  Sum_probs=37.8

Q ss_pred             CceEEEEc-CCCCEEEEEeC-CC----cEEEEeCCCC-eEEeeccC-CCe-eEEEE-----EEEEEeCC-----CeEEEE
Q 046394           47 GPYTLDFT-SSGRYMAAAGC-KG----YPYFYNRDGT-ELHCSKEH-GEV-LKLQF-----LLASINKL-----GQLRYQ  107 (378)
Q Consensus        47 ~v~~~~~s-p~g~~l~~~~~-dg----~i~iwd~~~~-~~~~~~~~-~~~-~~l~~-----~l~s~~~d-----~~i~iw  107 (378)
                      .+...+|| |||++||.+.. +|    .|+++|+.+. ..  +... ... ..+.|     .|+....|     ..|.++
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~--l~~~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~  252 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQT--IADKVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRH  252 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCC--CCCCEEEECSCCEECSSTTEEEEEEECTTCCEEEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEe--CCccccCceeeEEEecCCCEEEEEEECCCCCCCEEEEE
Confidence            56789999 99998886543 33    4999996554 31  1111 112 45566     33333332     357777


Q ss_pred             EcCCCc
Q 046394          108 NVTMGE  113 (378)
Q Consensus       108 d~~~~~  113 (378)
                      ++.+++
T Consensus       253 ~lgt~~  258 (751)
T 2xe4_A          253 VMGKLQ  258 (751)
T ss_dssp             ETTSCG
T ss_pred             ECCCCc
Confidence            776654

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.11  E-value=0.18  Score=48.06  Aligned_cols=160  Identities=14%  Similarity=0.029  Sum_probs=93.3

Q ss_pred             eccceeeeeecccce-eeEEeecCCCCceEEEEcCCCCEEEEEeC-CCcEEEEeCCCCe--EEeeccC-CCeeEEEE---
Q 046394           22 KQEAIAREVDILSSR-NQYDIMLPELGPYTLDFTSSGRYMAAAGC-KGYPYFYNRDGTE--LHCSKEH-GEVLKLQF---   93 (378)
Q Consensus        22 ~~~~~i~~~d~~~~~-~~~~l~~~~~~v~~~~~sp~g~~l~~~~~-dg~i~iwd~~~~~--~~~~~~~-~~~~~l~~---   93 (378)
                      .....|+..|+.... ....+...-..+.+++|++.+..|+.+.. .+.|..++.+|..  ...+... ..+..+++   
T Consensus        15 ~~~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~   94 (619)
T 3s94_A           15 ANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWL   94 (619)
T ss_dssp             ECSSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETT
T ss_pred             eccccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEec
Confidence            445566777776543 22222223356889999997777776654 5778888877652  2233322 34556666   


Q ss_pred             ---EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCC--Ce--------------eeecCCCEE
Q 046394           94 ---LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSG--GT--------------MLCHQGPVS  154 (378)
Q Consensus        94 ---~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--~~--------------~~~h~~~v~  154 (378)
                         ++++-...+.|.+.++........+.........|+++|.+..|+.+...  +.              ....-....
T Consensus        95 ~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~  174 (619)
T 3s94_A           95 GEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPN  174 (619)
T ss_dssp             TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEE
T ss_pred             CCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCc
Confidence               55666677899999986543333333445667889999976655444321  22              111234568


Q ss_pred             EEEEecCCCEEEEE-ECCCeEEEEEcCC
Q 046394          155 ALAFHPNGHLMATS-GKDCKIKIWDLRK  181 (378)
Q Consensus       155 ~~~~sp~g~~l~t~-~~d~~i~iwd~~~  181 (378)
                      .|++++++..|..+ +..+.|..+|+..
T Consensus       175 Glald~~~~~LY~aD~~~~~I~~~~~dG  202 (619)
T 3s94_A          175 GLTLDYEEQKLYWADAKLNFIHKSNLDG  202 (619)
T ss_dssp             EEEEETTTTEEEEEETTTCCEEEESSSC
T ss_pred             EEEEEccCCEEEEEeCCCCeEEEecCCC
Confidence            89999965555444 4566888888864

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.09  E-value=0.0044  Score=60.04  Aligned_cols=161  Identities=12%  Similarity=0.010  Sum_probs=92.0

Q ss_pred             EEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEe-CCCcEEEEeCCC----CeEE-eecc-CCCeeEEE
Q 046394           20 RIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAG-CKGYPYFYNRDG----TELH-CSKE-HGEVLKLQ   92 (378)
Q Consensus        20 ~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~-~dg~i~iwd~~~----~~~~-~~~~-~~~~~~l~   92 (378)
                      .+.....|+..++.+......+.. ...+.+|+|++.+..|+.+. ..+.|+.+++.+    .... .+.. ...+..++
T Consensus       381 l~~~~~~I~~id~~~~~~~~~~~~-~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~gla  459 (699)
T 1n7d_A          381 FFTNRHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLA  459 (699)
T ss_dssp             CCCCTTC-CEECTTSCCEECCSCC-CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEE
T ss_pred             EecCccceEEEeCCCCcceeeecc-CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEE
Confidence            344455667777766544333332 24677899999777776664 357899999765    2222 2211 11234444


Q ss_pred             E------EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCC--Ce-------------e-eecC
Q 046394           93 F------LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSG--GT-------------M-LCHQ  150 (378)
Q Consensus        93 ~------~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--~~-------------~-~~h~  150 (378)
                      +      ++++-...+.|.++++........+.........|+++|.+..|+.+...  +.             + ...-
T Consensus       460 vD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l  539 (699)
T 1n7d_A          460 VDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENI  539 (699)
T ss_dssp             CCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSC
T ss_pred             EEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCC
Confidence            4      44554567889999986544433333334567788999876655544321  22             1 0111


Q ss_pred             CCEEEEEEecCC-CEEEEEECCCeEEEEEcCC
Q 046394          151 GPVSALAFHPNG-HLMATSGKDCKIKIWDLRK  181 (378)
Q Consensus       151 ~~v~~~~~sp~g-~~l~t~~~d~~i~iwd~~~  181 (378)
                      .....|+|+|++ +++++-+..+.|..+|+..
T Consensus       540 ~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG  571 (699)
T 1n7d_A          540 QWPNGITLDLLSGRLYWVDSKLHSISSIDVNG  571 (699)
T ss_dssp             SSCCCEEECTTTCCEEEEETTTTEEEEECSSS
T ss_pred             CCccEEEEeccCCEEEEEecCCCeEEEEccCC
Confidence            234578999864 4455555667888888753

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.08  E-value=0.036  Score=50.30  Aligned_cols=101  Identities=16%  Similarity=0.175  Sum_probs=64.5

Q ss_pred             CeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCC---e----e-----------eecCCCEEEEEEec-CC
Q 046394          102 GQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGG---T----M-----------LCHQGPVSALAFHP-NG  162 (378)
Q Consensus       102 ~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~---~----~-----------~~h~~~v~~~~~sp-~g  162 (378)
                      +.|+.+|+.++.... +......+..++++++|.++++.....   .    +           ...-.....++++| +|
T Consensus       162 ~~I~~id~~~g~v~~-~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~~~~~P~giavd~~~G  240 (433)
T 4hw6_A          162 DAFRHVDFVNQYVDI-KTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFTERLSLCNARGAKTCAVHPQNG  240 (433)
T ss_dssp             SCEEEEETTTTEEEE-ECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTCCEEEEEECSSBCCCEECTTTC
T ss_pred             CCEEEEECCCCEEEE-eecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCeeccccccccCCCCEEEEeCCCC
Confidence            667777776665543 333445688999999999444433211   1    0           01122345688999 78


Q ss_pred             CEEEEEECCCeEEEEEcCCceeeeee-----cCCceEEEEecCCCc
Q 046394          163 HLMATSGKDCKIKIWDLRKYEVLQTL-----PGHAKTLDFSRKDSG  203 (378)
Q Consensus       163 ~~l~t~~~d~~i~iwd~~~~~~~~~~-----~~~i~~~~~sp~g~~  203 (378)
                      .++++-..++.|+.+|..++.....+     ......++|+|+|.+
T Consensus       241 ~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~  286 (433)
T 4hw6_A          241 KIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDW  286 (433)
T ss_dssp             CEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSE
T ss_pred             eEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCE
Confidence            77777777889999999877663333     123356999999983

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.06  E-value=0.13  Score=44.60  Aligned_cols=195  Identities=11%  Similarity=0.062  Sum_probs=104.0

Q ss_pred             CCceEEEEcCCCCEEEEEeCCCcEEEEeCCCC-eEEee--cc--CCC-eeEEEE---EEEEEeCCCeEEEEEcCCCcEEE
Q 046394           46 LGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGT-ELHCS--KE--HGE-VLKLQF---LLASINKLGQLRYQNVTMGEIVG  116 (378)
Q Consensus        46 ~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~-~~~~~--~~--~~~-~~~l~~---~l~s~~~d~~i~iwd~~~~~~~~  116 (378)
                      ..+.+|.|.+++..+++ +..|.|... .++. .-..+  ..  ... ..++.|   .++.++.++.|.. ....|+.-.
T Consensus        36 ~~~~~v~~~~~~~~~~~-G~~g~i~~s-~DgG~tW~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~g~i~~-S~DgG~tW~  112 (327)
T 2xbg_A           36 ATILDMSFIDRHHGWLV-GVNATLMET-RDGGQTWEPRTLVLDHSDYRFNSVSFQGNEGWIVGEPPIMLH-TTDGGQSWS  112 (327)
T ss_dssp             SCEEEEEESSSSCEEEE-ETTTEEEEE-SSTTSSCEECCCCCSCCCCEEEEEEEETTEEEEEEETTEEEE-ESSTTSSCE
T ss_pred             CcEEEEEECCCCcEEEE-cCCCeEEEe-CCCCCCCeECCCCCCCCCccEEEEEecCCeEEEEECCCeEEE-ECCCCCCce
Confidence            46889999887777775 456765433 3332 11111  11  122 266766   3333455565433 223344333


Q ss_pred             EEec---CCCCeeEEEEcCCCCEEEEEcCCCe-------------eeecCCCEEEEEEecCCCEEEEEECCCeEEEEEc-
Q 046394          117 NFWT---GLGRTDVIRVNPFNGVVSLGHSGGT-------------MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDL-  179 (378)
Q Consensus       117 ~~~~---~~~~v~~~~~s~~~~~l~~~~~d~~-------------~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~-  179 (378)
                      .+..   ..+.+..+.+.+++..++++...+.             ...+...+..+++.|++.+++.+...+..+-+|- 
T Consensus       113 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~v~~S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~g  192 (327)
T 2xbg_A          113 QIPLDPKLPGSPRLIKALGNGSAEMITNVGAIYRTKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPG  192 (327)
T ss_dssp             ECCCCTTCSSCEEEEEEEETTEEEEEETTCCEEEESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTT
T ss_pred             ECccccCCCCCeEEEEEECCCCEEEEeCCccEEEEcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCC
Confidence            3221   2345677877777776666543222             2234557889999999888776654444444442 


Q ss_pred             -CCceeeeee-cCCceEEEEecCCCccccCCC--------C-CceEEEeecc---CCcceeeeEEcCCCCeEEEecCC
Q 046394          180 -RKYEVLQTL-PGHAKTLDFSRKDSGDFSGSH--------N-YNRYMGYSMV---KGYQIGKVSFRPYEDVLGIGHSM  243 (378)
Q Consensus       180 -~~~~~~~~~-~~~i~~~~~sp~g~~~~~~~~--------~-~~~~~~~~~~---~~~~v~~~~~sp~g~~l~~~~~~  243 (378)
                       .+.+.+... ...+..+.+++++...+....        + +........+   ....+.++.|.|++.+++++...
T Consensus       193 G~tW~~~~~~~~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~g  270 (327)
T 2xbg_A          193 QTAWEPHNRTTSRRLHNMGFTPDGRLWMIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGGAG  270 (327)
T ss_dssp             CSSCEEEECCSSSCEEEEEECTTSCEEEEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEESTT
T ss_pred             CCceeECCCCCCCccceeEECCCCCEEEEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeCCC
Confidence             233333222 456778888888764322211        0 1111111110   12347889999988888877643

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.00  E-value=0.039  Score=53.05  Aligned_cols=90  Identities=4%  Similarity=-0.055  Sum_probs=54.9

Q ss_pred             eeeeeecccceee--EEeec-CCCCceEEEEcCCCCEEEEEeC-CCcEEEEeCCCCeEEeecc-C--CCeeEEEE-----
Q 046394           26 IAREVDILSSRNQ--YDIML-PELGPYTLDFTSSGRYMAAAGC-KGYPYFYNRDGTELHCSKE-H--GEVLKLQF-----   93 (378)
Q Consensus        26 ~i~~~d~~~~~~~--~~l~~-~~~~v~~~~~sp~g~~l~~~~~-dg~i~iwd~~~~~~~~~~~-~--~~~~~l~~-----   93 (378)
                      .+.+||+.+++..  ..+.. +.....++++.++|..+++|+. +..+.+||.....-..+.. +  ....++.+     
T Consensus       220 ~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~  299 (656)
T 1k3i_A          220 LTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGR  299 (656)
T ss_dssp             EEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSC
T ss_pred             EEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCe
Confidence            5788998887632  22322 3233456788899999999985 5589999954433333221 1  11123333     


Q ss_pred             EEEEEe-CC-----CeEEEEEcCCCcEE
Q 046394           94 LLASIN-KL-----GQLRYQNVTMGEIV  115 (378)
Q Consensus        94 ~l~s~~-~d-----~~i~iwd~~~~~~~  115 (378)
                      +++.|+ .+     ..+.+||..+.+..
T Consensus       300 iyv~GG~~~~~~~~~~~e~yd~~t~~W~  327 (656)
T 1k3i_A          300 VFTIGGSWSGGVFEKNGEVYSPSSKTWT  327 (656)
T ss_dssp             EEEECCCCCSSSCCCCEEEEETTTTEEE
T ss_pred             EEEEeCcccCCcccccceEeCCCCCcce
Confidence            666676 34     56899999876643

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=96.97  E-value=0.22  Score=45.67  Aligned_cols=119  Identities=13%  Similarity=0.066  Sum_probs=73.4

Q ss_pred             cceeeeeecccceeeEEeecCC---CCceEEEE-------cCCCCEEEEEeCCC-------cEEEEeCCC--CeE-----
Q 046394           24 EAIAREVDILSSRNQYDIMLPE---LGPYTLDF-------TSSGRYMAAAGCKG-------YPYFYNRDG--TEL-----   79 (378)
Q Consensus        24 ~~~i~~~d~~~~~~~~~l~~~~---~~v~~~~~-------sp~g~~l~~~~~dg-------~i~iwd~~~--~~~-----   79 (378)
                      ...|+++|+.++.....+....   ..+..|+|       +++|.+|+++...+       .|.+++...  ...     
T Consensus       161 ~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~  240 (496)
T 3kya_A          161 HKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDI  240 (496)
T ss_dssp             EEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCE
T ss_pred             CCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccc
Confidence            4678888888776654443321   24789999       99999777776654       266775322  221     


Q ss_pred             EeeccCCCeeEEEE------EEEEEeCCCeEEEEEcC-------CCcE-----------EEE-Eec-CCCCeeEEEEcCC
Q 046394           80 HCSKEHGEVLKLQF------LLASINKLGQLRYQNVT-------MGEI-----------VGN-FWT-GLGRTDVIRVNPF  133 (378)
Q Consensus        80 ~~~~~~~~~~~l~~------~l~s~~~d~~i~iwd~~-------~~~~-----------~~~-~~~-~~~~v~~~~~s~~  133 (378)
                      ..+.....+..+++      ++++-..++.|..+|+.       ++..           ... +.. .......|+|+|+
T Consensus       241 ~~v~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~  320 (496)
T 3kya_A          241 QLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPT  320 (496)
T ss_dssp             EEEEEESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTT
T ss_pred             eeeccCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCC
Confidence            22222223355555      66677778889999987       5543           112 222 2244678999999


Q ss_pred             CCEEEEEcC
Q 046394          134 NGVVSLGHS  142 (378)
Q Consensus       134 ~~~l~~~~~  142 (378)
                      |..|+++..
T Consensus       321 G~~lYvaD~  329 (496)
T 3kya_A          321 GKYAYFGVI  329 (496)
T ss_dssp             SSEEEEEET
T ss_pred             CCEEEEEeC
Confidence            996655543

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=96.89  E-value=0.033  Score=50.53  Aligned_cols=132  Identities=11%  Similarity=0.045  Sum_probs=78.9

Q ss_pred             CceEEEEcC-CCCEEEEEeCCCcEEEEeCCCCeEEeeccCC-CeeEEEE-----EEEEEeC-CC----eEEEEEcCCCcE
Q 046394           47 GPYTLDFTS-SGRYMAAAGCKGYPYFYNRDGTELHCSKEHG-EVLKLQF-----LLASINK-LG----QLRYQNVTMGEI  114 (378)
Q Consensus        47 ~v~~~~~sp-~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~l~~-----~l~s~~~-d~----~i~iwd~~~~~~  114 (378)
                      .+..|+++| ++..|+++...+.|+.+|..+..+..+.... .+..++|     .|+.+.. ++    .+.+++. .+..
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~~  216 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ESGF  216 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GGTS
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CCce
Confidence            567999998 4556666655578999998776665554333 3588888     3444433 22    3444443 3322


Q ss_pred             E--EEEecCCCCeeEEEEcC-CCCEEEEEcCCCe----------e---ee--cCCCEEEEEEecCCCEE-EEEECCCeEE
Q 046394          115 V--GNFWTGLGRTDVIRVNP-FNGVVSLGHSGGT----------M---LC--HQGPVSALAFHPNGHLM-ATSGKDCKIK  175 (378)
Q Consensus       115 ~--~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~----------~---~~--h~~~v~~~~~sp~g~~l-~t~~~d~~i~  175 (378)
                      .  ..+. .......++++| ++.++++-..++.          .   ..  .......++|+|+|++| ++-...+.|.
T Consensus       217 ~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~  295 (430)
T 3tc9_A          217 KVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYIL  295 (430)
T ss_dssp             CSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEE
T ss_pred             eeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEE
Confidence            1  2222 134567888999 5665555444443          1   01  11235679999999954 4555677888


Q ss_pred             EEEcC
Q 046394          176 IWDLR  180 (378)
Q Consensus       176 iwd~~  180 (378)
                      .++..
T Consensus       296 ~~~~d  300 (430)
T 3tc9_A          296 RSDYD  300 (430)
T ss_dssp             EEEEE
T ss_pred             EEeCC
Confidence            88765

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=96.84  E-value=0.41  Score=46.86  Aligned_cols=142  Identities=9%  Similarity=-0.054  Sum_probs=87.5

Q ss_pred             CCceEEEEcCCCCEEEEE-eCCCcEEEEeCCCCeEEeeccC--CCeeEEEE------EEEEEe-CCCeEEEEEcCCCcEE
Q 046394           46 LGPYTLDFTSSGRYMAAA-GCKGYPYFYNRDGTELHCSKEH--GEVLKLQF------LLASIN-KLGQLRYQNVTMGEIV  115 (378)
Q Consensus        46 ~~v~~~~~sp~g~~l~~~-~~dg~i~iwd~~~~~~~~~~~~--~~~~~l~~------~l~s~~-~d~~i~iwd~~~~~~~  115 (378)
                      ..+..|++.+.+..|+.+ ...+.|.+.+++|.....+...  ..+..|++      ++++-. ..+.|...++......
T Consensus       471 ~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~  550 (791)
T 3m0c_C          471 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY  550 (791)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEE
T ss_pred             CCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceE
Confidence            467789999877666655 4477899999888776665432  23577777      333332 2378888888644433


Q ss_pred             EEEecCCCCeeEEEEcCCCCEEEEEcCCCe--------------e-ee--cCCCEEEEEEecCCCEEEEEECCCeEEEEE
Q 046394          116 GNFWTGLGRTDVIRVNPFNGVVSLGHSGGT--------------M-LC--HQGPVSALAFHPNGHLMATSGKDCKIKIWD  178 (378)
Q Consensus       116 ~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~--------------~-~~--h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd  178 (378)
                      ..+.......+.|++++.+..|+.+.....              + ..  .-....+|++.. ++++++-...+.|...|
T Consensus       551 ~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~-~~lYwtD~~~~~I~~~d  629 (791)
T 3m0c_C          551 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFSAN  629 (791)
T ss_dssp             EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET-TEEEEEETTTTEEEEEE
T ss_pred             EEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeC-CEEEEEECCCCEEEEEe
Confidence            333334467889999988776666543222              1 11  112334555532 34445555667888888


Q ss_pred             cCCceeeeee
Q 046394          179 LRKYEVLQTL  188 (378)
Q Consensus       179 ~~~~~~~~~~  188 (378)
                      ..+|..+..+
T Consensus       630 k~tG~~~~~l  639 (791)
T 3m0c_C          630 RLTGSDVNLL  639 (791)
T ss_dssp             TTTCCCCEEE
T ss_pred             CCCCcceEEe
Confidence            7777666555

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.80  E-value=0.18  Score=44.90  Aligned_cols=126  Identities=10%  Similarity=0.104  Sum_probs=83.4

Q ss_pred             eEEEeccceeeeeecccceeeEEeecC---CC-CceEEEEcCCCCEEEEEeCCCcEEEEeCC-CC------------eEE
Q 046394           18 TWRIKQEAIAREVDILSSRNQYDIMLP---EL-GPYTLDFTSSGRYMAAAGCKGYPYFYNRD-GT------------ELH   80 (378)
Q Consensus        18 ~~~~~~~~~i~~~d~~~~~~~~~l~~~---~~-~v~~~~~sp~g~~l~~~~~dg~i~iwd~~-~~------------~~~   80 (378)
                      -+.+.+++.||.-++........+...   .. .|..+..||+|++||..+.. .|.|-.+. +.            ...
T Consensus        34 ~i~~a~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~-~V~Vv~LP~~~~~~~~~~~~~~~q~~  112 (452)
T 3pbp_A           34 RIVFIQDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDN-EIFVMEVPWGYSNVEDVSIQDAFQIF  112 (452)
T ss_dssp             EEEEEETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSS-EEEEEECCTTCSCCCCHHHHHTTEEE
T ss_pred             EEEEEECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCC-eEEEEEecCccccCccccccccccee
Confidence            344556688888777755555555554   23 68899999999999998654 78888743 21            112


Q ss_pred             eecc-------CCCeeEEEE--------EEEEEeCCCeEEEEEcCCC--cEEEEEe---------cCCCCeeEEEEcCCC
Q 046394           81 CSKE-------HGEVLKLQF--------LLASINKLGQLRYQNVTMG--EIVGNFW---------TGLGRTDVIRVNPFN  134 (378)
Q Consensus        81 ~~~~-------~~~~~~l~~--------~l~s~~~d~~i~iwd~~~~--~~~~~~~---------~~~~~v~~~~~s~~~  134 (378)
                      .+.-       ...+..+.|        .|++-..|+.|++||+...  .+. .+.         .....|.+++|.+++
T Consensus       113 ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~  191 (452)
T 3pbp_A          113 HYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDG  191 (452)
T ss_dssp             EEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTS
T ss_pred             EEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCC
Confidence            2221       123477788        7888889999999999852  222 232         122568899999988


Q ss_pred             CEEEEEc--CCCe
Q 046394          135 GVVSLGH--SGGT  145 (378)
Q Consensus       135 ~~l~~~~--~d~~  145 (378)
                      -.|++.+  ..|.
T Consensus       192 lTLYvl~~t~~GD  204 (452)
T 3pbp_A          192 LTLYCLNTTEGGD  204 (452)
T ss_dssp             SCEEEEECTTSCE
T ss_pred             cEEEEEecCCCCC
Confidence            7666644  6565

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.80  E-value=0.065  Score=47.73  Aligned_cols=58  Identities=14%  Similarity=0.205  Sum_probs=43.1

Q ss_pred             CeeEEEEcCCCCEEEEEcCCCe-------------------------ee------ecCCCEEEEEEec---CCCEEEEEE
Q 046394          124 RTDVIRVNPFNGVVSLGHSGGT-------------------------ML------CHQGPVSALAFHP---NGHLMATSG  169 (378)
Q Consensus       124 ~v~~~~~s~~~~~l~~~~~d~~-------------------------~~------~h~~~v~~~~~sp---~g~~l~t~~  169 (378)
                      .+..+..||+|.+||..+..+.                         +.      ....+|..+.|||   .|..|++-.
T Consensus        67 ~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLt  146 (452)
T 3pbp_A           67 DTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLK  146 (452)
T ss_dssp             TTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEE
T ss_pred             ceeEEEECCCCCEEEEecCCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEe
Confidence            4566777777777776655544                         00      0246799999999   466899999


Q ss_pred             CCCeEEEEEcCC
Q 046394          170 KDCKIKIWDLRK  181 (378)
Q Consensus       170 ~d~~i~iwd~~~  181 (378)
                      .|+.|++||+..
T Consensus       147 sD~~Ir~yDl~~  158 (452)
T 3pbp_A          147 EDDTITMFDILN  158 (452)
T ss_dssp             TTSCEEEEETTC
T ss_pred             cCCEEEEEEccc
Confidence            999999999976

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=96.79  E-value=0.17  Score=43.91  Aligned_cols=134  Identities=15%  Similarity=0.093  Sum_probs=77.3

Q ss_pred             CCCCceEEEEcCCCCEEEEEeCCCcEEE-EeCCCCeEEeec--cCCCeeEEEE----EEEEEeCCCeEEEEEcCCCcEEE
Q 046394           44 PELGPYTLDFTSSGRYMAAAGCKGYPYF-YNRDGTELHCSK--EHGEVLKLQF----LLASINKLGQLRYQNVTMGEIVG  116 (378)
Q Consensus        44 ~~~~v~~~~~sp~g~~l~~~~~dg~i~i-wd~~~~~~~~~~--~~~~~~~l~~----~l~s~~~d~~i~iwd~~~~~~~~  116 (378)
                      +...+.+++++|++.+++++. .|.++. +|..+..-..+.  .......+.+    .++.++.+|.+.+.+...++...
T Consensus       161 ~~~~~~~~~~~~~~~~~~~g~-~G~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G~tW~  239 (327)
T 2xbg_A          161 AIGVMRNLNRSPSGEYVAVSS-RGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDGRLWMIVNGGKIAFSDPDNSENWG  239 (327)
T ss_dssp             CCCCEEEEEECTTSCEEEEET-TSSEEEEECTTCSSCEEEECCSSSCEEEEEECTTSCEEEEETTTEEEEEETTEEEEEC
T ss_pred             CCcceEEEEEcCCCcEEEEEC-CCcEEEEeCCCCCceeECCCCCCCccceeEECCCCCEEEEeCCceEEEecCCCCCeeE
Confidence            345788999999988877664 455544 343233222221  1223366666    44455567877776433244333


Q ss_pred             EEecC----CCCeeEEEEcCCCCEEEEEcCCCe------------ee---ecCCCEEEEEEecCCCEEEEEECCCeEEEE
Q 046394          117 NFWTG----LGRTDVIRVNPFNGVVSLGHSGGT------------ML---CHQGPVSALAFHPNGHLMATSGKDCKIKIW  177 (378)
Q Consensus       117 ~~~~~----~~~v~~~~~s~~~~~l~~~~~d~~------------~~---~h~~~v~~~~~sp~g~~l~t~~~d~~i~iw  177 (378)
                      .+...    ...+.++.+.+++.+++++.....            +.   .+...+.++.|.+++ .++.++.+|.|.-+
T Consensus       240 ~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~g~i~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~-~~~~~G~~G~i~~~  318 (327)
T 2xbg_A          240 ELLSPLRRNSVGFLDLAYRTPNEVWLAGGAGALLCSQDGGQTWQQDVDVKKVPSNFYKILFFSPD-QGFILGQKGILLRY  318 (327)
T ss_dssp             CCBCTTSSCCSCEEEEEESSSSCEEEEESTTCEEEESSTTSSCEECGGGTTSSSCCCEEEEEETT-EEEEECSTTEEEEE
T ss_pred             eccCCcccCCcceEEEEecCCCEEEEEeCCCeEEEeCCCCcccEEcCccCCCCCCeEEEEEECCC-ceEEEcCCceEEEE
Confidence            33211    234788899988887777654333            11   123467888887655 46677778877766


Q ss_pred             Ec
Q 046394          178 DL  179 (378)
Q Consensus       178 d~  179 (378)
                      +-
T Consensus       319 ~~  320 (327)
T 2xbg_A          319 VT  320 (327)
T ss_dssp             CC
T ss_pred             cC
Confidence            53

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=96.76  E-value=0.28  Score=43.83  Aligned_cols=147  Identities=12%  Similarity=0.012  Sum_probs=86.9

Q ss_pred             EEEEEeCCCcEEEEeCCCCeEEe-eccCCCeeEEEE------EEEEEeCCCeEEEEEcCCC----cEEEEEecCCCCeeE
Q 046394           59 YMAAAGCKGYPYFYNRDGTELHC-SKEHGEVLKLQF------LLASINKLGQLRYQNVTMG----EIVGNFWTGLGRTDV  127 (378)
Q Consensus        59 ~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~~l~~------~l~s~~~d~~i~iwd~~~~----~~~~~~~~~~~~v~~  127 (378)
                      +|+.+. ...|+..++.+..... +.....+..++|      ++.+-...+.|..+++...    .....+......+..
T Consensus        85 ~ll~~~-~~~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~g  163 (400)
T 3p5b_L           85 YLFFTN-RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG  163 (400)
T ss_dssp             EEEEEE-TTEEEEECTTSCSCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEE
T ss_pred             eeEEec-cceeEEEccCCcceeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCccc
Confidence            555554 4578888976654433 333344578888      4555556788888888652    223333334466788


Q ss_pred             EEEcCCCCEEEEE-cCCCe--------------eeecCCCEEEEEEecCCCEEEEEE-C-CCeEEEEEcCCceeeeee--
Q 046394          128 IRVNPFNGVVSLG-HSGGT--------------MLCHQGPVSALAFHPNGHLMATSG-K-DCKIKIWDLRKYEVLQTL--  188 (378)
Q Consensus       128 ~~~s~~~~~l~~~-~~d~~--------------~~~h~~~v~~~~~sp~g~~l~t~~-~-d~~i~iwd~~~~~~~~~~--  188 (378)
                      +++.+.+..|+.+ ...+.              +...-.....|+++|.+.+|..+. . .+.|...++.. .....+  
T Consensus       164 lavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG-~~~~~~~~  242 (400)
T 3p5b_L          164 LAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VDIYSLVT  242 (400)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTS-CSCEEEEC
T ss_pred             EEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCC-CccEEEEE
Confidence            9999855444433 33333              222334578899999655554443 3 36788888854 333333  


Q ss_pred             --cCCceEEEEecCCCccccC
Q 046394          189 --PGHAKTLDFSRKDSGDFSG  207 (378)
Q Consensus       189 --~~~i~~~~~sp~g~~~~~~  207 (378)
                        -...+.|+++|++....|.
T Consensus       243 ~~l~~P~glavd~~~~~lY~a  263 (400)
T 3p5b_L          243 ENIQWPNGITLDLLSGRLYWV  263 (400)
T ss_dssp             SSCSCEEEEEEETTTTEEEEE
T ss_pred             CCCCceEEEEEEeCCCEEEEE
Confidence              2567899999887765553

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=96.70  E-value=0.25  Score=42.49  Aligned_cols=146  Identities=12%  Similarity=-0.003  Sum_probs=84.2

Q ss_pred             EEEEEeCCCcEEEEeCCCCe-EEeeccCCCeeEEEE------EEEEEeCCCeEEEEEcCC----CcEEEEEecCCCCeeE
Q 046394           59 YMAAAGCKGYPYFYNRDGTE-LHCSKEHGEVLKLQF------LLASINKLGQLRYQNVTM----GEIVGNFWTGLGRTDV  127 (378)
Q Consensus        59 ~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~l~~------~l~s~~~d~~i~iwd~~~----~~~~~~~~~~~~~v~~  127 (378)
                      +|+.+.. ..|+..|+.+.. ...+.....+..++|      ++++-..++.|..+++..    ......+......+..
T Consensus         3 ~ll~~~~-~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~g   81 (316)
T 1ijq_A            3 YLFFTNR-HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG   81 (316)
T ss_dssp             EEEEECB-SSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCE
T ss_pred             EEEEECC-CeEEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCE
Confidence            4455443 468888865543 333444445577777      555555678899999865    2222223223345688


Q ss_pred             EEEcCCCCEEEEE-cCCCe--------------eeecCCCEEEEEEecCCCEEEEEE-CC-CeEEEEEcCCceeeeee--
Q 046394          128 IRVNPFNGVVSLG-HSGGT--------------MLCHQGPVSALAFHPNGHLMATSG-KD-CKIKIWDLRKYEVLQTL--  188 (378)
Q Consensus       128 ~~~s~~~~~l~~~-~~d~~--------------~~~h~~~v~~~~~sp~g~~l~t~~-~d-~~i~iwd~~~~~~~~~~--  188 (378)
                      +++++.+..|+.+ ...+.              ..........++++|.+..|..+. .. +.|..+++. |.....+  
T Consensus        82 lavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d-G~~~~~~~~  160 (316)
T 1ijq_A           82 LAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLVT  160 (316)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCCEEEEEC
T ss_pred             EEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC-CCCeEEEEE
Confidence            9998765544433 33222              112234678899999655544444 33 688888875 3433333  


Q ss_pred             --cCCceEEEEecCCCcccc
Q 046394          189 --PGHAKTLDFSRKDSGDFS  206 (378)
Q Consensus       189 --~~~i~~~~~sp~g~~~~~  206 (378)
                        -...+.++++|++....|
T Consensus       161 ~~~~~P~gla~d~~~~~lY~  180 (316)
T 1ijq_A          161 ENIQWPNGITLDLLSGRLYW  180 (316)
T ss_dssp             SSCSCEEEEEEETTTTEEEE
T ss_pred             CCCCCceEEEEeccCCEEEE
Confidence              245789999988765444

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=96.65  E-value=0.3  Score=42.76  Aligned_cols=94  Identities=17%  Similarity=0.123  Sum_probs=55.8

Q ss_pred             CCceEEEEcCCCCEEEEEeCCCcEEEEeCCCCeE--Eeec----cCCCeeEEEE---------EEEEEeCC-----CeEE
Q 046394           46 LGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTEL--HCSK----EHGEVLKLQF---------LLASINKL-----GQLR  105 (378)
Q Consensus        46 ~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~--~~~~----~~~~~~~l~~---------~l~s~~~d-----~~i~  105 (378)
                      ..+..|+|.|+|++ +++...|.|.+++ ++...  ..+.    +...+..++|         ++++-...     +.|.
T Consensus        31 ~~P~~ia~~pdG~l-~V~e~~g~I~~i~-~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~  108 (352)
T 2ism_A           31 EVPWALAFLPDGGM-LIAERPGRIRLFR-EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVV  108 (352)
T ss_dssp             SCEEEEEECTTSCE-EEEETTTEEEEEE-TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEE
T ss_pred             CCceEEEEcCCCeE-EEEeCCCeEEEEE-CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEE
Confidence            56889999999984 5556679999998 54321  1111    1223477777         23332222     6788


Q ss_pred             EEEcCCCc-----EE-EEEec---CCCCeeEEEEcCCCCEEEEEc
Q 046394          106 YQNVTMGE-----IV-GNFWT---GLGRTDVIRVNPFNGVVSLGH  141 (378)
Q Consensus       106 iwd~~~~~-----~~-~~~~~---~~~~v~~~~~s~~~~~l~~~~  141 (378)
                      .|+...+.     .+ ..+..   .......++|.|+|.++++.+
T Consensus       109 r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G  153 (352)
T 2ism_A          109 RLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG  153 (352)
T ss_dssp             EEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred             EEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence            88876432     11 22331   112346899999997666543

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=96.44  E-value=0.0086  Score=58.01  Aligned_cols=141  Identities=10%  Similarity=-0.021  Sum_probs=80.0

Q ss_pred             CceEEEEcCCCCEEEEE-eCCCcEEEEeCCCCeEEeeccC--CCeeEEEE------EEEEEeC-CCeEEEEEcCCCcEEE
Q 046394           47 GPYTLDFTSSGRYMAAA-GCKGYPYFYNRDGTELHCSKEH--GEVLKLQF------LLASINK-LGQLRYQNVTMGEIVG  116 (378)
Q Consensus        47 ~v~~~~~sp~g~~l~~~-~~dg~i~iwd~~~~~~~~~~~~--~~~~~l~~------~l~s~~~-d~~i~iwd~~~~~~~~  116 (378)
                      .+..|++.+.+..|+.+ ...+.|.+++.++..+..+...  ..+..+++      ++++-.. .+.|..+++.......
T Consensus       454 ~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~  533 (699)
T 1n7d_A          454 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS  533 (699)
T ss_dssp             -CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCE
T ss_pred             CcceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeE
Confidence            45678888655444443 4567899999887766555332  23466665      3333222 3678777774322222


Q ss_pred             EEecCCCCeeEEEEcCCCCEEEEEcCC-Ce-------------eee---cCCCEEEEEEecCCCEEEEEECCCeEEEEEc
Q 046394          117 NFWTGLGRTDVIRVNPFNGVVSLGHSG-GT-------------MLC---HQGPVSALAFHPNGHLMATSGKDCKIKIWDL  179 (378)
Q Consensus       117 ~~~~~~~~v~~~~~s~~~~~l~~~~~d-~~-------------~~~---h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~  179 (378)
                      .+.......+.|+|+|++..|+.+... +.             +..   .......|++..+ .++++....+.|..+|.
T Consensus       534 l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~  612 (699)
T 1n7d_A          534 LVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANR  612 (699)
T ss_dssp             ESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEET
T ss_pred             EEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEc
Confidence            222233557789999987655544332 22             110   0112234555443 44555566778999998


Q ss_pred             CCceeeeee
Q 046394          180 RKYEVLQTL  188 (378)
Q Consensus       180 ~~~~~~~~~  188 (378)
                      .+++.+..+
T Consensus       613 ~~G~~~~~i  621 (699)
T 1n7d_A          613 LTGSDVNLL  621 (699)
T ss_dssp             TTEEEEECC
T ss_pred             cCCCceEEe
Confidence            888877776

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=96.21  E-value=0.053  Score=47.12  Aligned_cols=170  Identities=14%  Similarity=0.054  Sum_probs=95.9

Q ss_pred             eeeEEEeccceeeeeecccceeeEEeecCC-CCceEEEE--cCCCCEEEEE--eCCCcEEEEeC-CCCeEEeeccC----
Q 046394           16 EKTWRIKQEAIAREVDILSSRNQYDIMLPE-LGPYTLDF--TSSGRYMAAA--GCKGYPYFYNR-DGTELHCSKEH----   85 (378)
Q Consensus        16 ~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~-~~v~~~~~--sp~g~~l~~~--~~dg~i~iwd~-~~~~~~~~~~~----   85 (378)
                      +..|..+.++.|..+|..+|+..+.+.... .++....-  .+.+..++.+  +.||.|+.++. +|.....+...    
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~   90 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS   90 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence            456667789999999999999999987641 22222110  0112234433  57999999994 44333322211    


Q ss_pred             CCeeE------E------EE--EEEEEeCCCeEEEEEcCCCcEEEEEecCC--CC-----eeEEEEc-----CCCCEEEE
Q 046394           86 GEVLK------L------QF--LLASINKLGQLRYQNVTMGEIVGNFWTGL--GR-----TDVIRVN-----PFNGVVSL  139 (378)
Q Consensus        86 ~~~~~------l------~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~~~--~~-----v~~~~~s-----~~~~~l~~  139 (378)
                      ..+..      +      ..  .+++++.+|.+...|+.+|+.+..+....  +.     ..|....     ..+..++.
T Consensus        91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~i  170 (339)
T 2be1_A           91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVI  170 (339)
T ss_dssp             TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEEE
T ss_pred             ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEEE
Confidence            11111      0      02  67889999999999999999999987432  10     1122211     12345555


Q ss_pred             EcCCCee--eecCCCEEEEE---Ee---------------cCCCEEEEEECCCeEEEEEcCCceeee
Q 046394          140 GHSGGTM--LCHQGPVSALA---FH---------------PNGHLMATSGKDCKIKIWDLRKYEVLQ  186 (378)
Q Consensus       140 ~~~d~~~--~~h~~~v~~~~---~s---------------p~g~~l~t~~~d~~i~iwd~~~~~~~~  186 (378)
                      +..+..+  .+..+.+..+.   |.               .++.+ +.++.||.|.-+|..+|..+.
T Consensus       171 g~~~y~v~~~~~sG~~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W  236 (339)
T 2be1_A          171 GKTIFELGIHSYDGASYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARW  236 (339)
T ss_dssp             EEEEEECEECCTTSCCCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred             ecceEEEEEECCCCCeEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence            5444331  11122222222   21               12555 457889999999999888776

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=96.09  E-value=0.75  Score=44.06  Aligned_cols=93  Identities=5%  Similarity=-0.010  Sum_probs=56.1

Q ss_pred             eEEEEcC-CCCEEEEEeCCC-----------cEEEEeCCCCe---EEeeccCC-Ce-eEEEE-----EEEEEe-CCCeEE
Q 046394           49 YTLDFTS-SGRYMAAAGCKG-----------YPYFYNRDGTE---LHCSKEHG-EV-LKLQF-----LLASIN-KLGQLR  105 (378)
Q Consensus        49 ~~~~~sp-~g~~l~~~~~dg-----------~i~iwd~~~~~---~~~~~~~~-~~-~~l~~-----~l~s~~-~d~~i~  105 (378)
                      .++++.| +|+.++.|+.+.           .+.+||.....   +..+.... .. .++++     +++.|+ .+..+.
T Consensus       189 ~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~  268 (656)
T 1k3i_A          189 AAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTS  268 (656)
T ss_dssp             SEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEE
T ss_pred             eeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceE
Confidence            3667777 888888887643           58889954332   22222222 11 33444     677777 456899


Q ss_pred             EEEcCCCcEEEEEecCC-CCeeEEEEcCCCCEEEEEc
Q 046394          106 YQNVTMGEIVGNFWTGL-GRTDVIRVNPFNGVVSLGH  141 (378)
Q Consensus       106 iwd~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~  141 (378)
                      +||..+.+....-.... ..-.+++..+++++++.|+
T Consensus       269 ~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG  305 (656)
T 1k3i_A          269 LYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGG  305 (656)
T ss_dssp             EEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECC
T ss_pred             EecCcCCceeECCCCCccccccceEEecCCeEEEEeC
Confidence            99998775443221121 2224566778999999888

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=96.03  E-value=0.018  Score=56.30  Aligned_cols=84  Identities=13%  Similarity=0.106  Sum_probs=48.6

Q ss_pred             CeeEEEEc-CCCCEEEEEcC-CCe---------eeec----CCCE----EEEEEecCCCEEEEEECC-----CeEEEEEc
Q 046394          124 RTDVIRVN-PFNGVVSLGHS-GGT---------MLCH----QGPV----SALAFHPNGHLMATSGKD-----CKIKIWDL  179 (378)
Q Consensus       124 ~v~~~~~s-~~~~~l~~~~~-d~~---------~~~h----~~~v----~~~~~sp~g~~l~t~~~d-----~~i~iwd~  179 (378)
                      .+...+|| |||++|+.+.. +|.         +.+.    ...+    .+++|+|||+.|+....|     ..|.++++
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~l  254 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVM  254 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEEECSCCEECSSTTEEEEEEECTTCCEEEEEEEET
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccCceeeEEEecCCCEEEEEEECCCCCCCEEEEEEC
Confidence            45677888 88887765443 222         1111    1122    246788888877766654     25777777


Q ss_pred             CCceee--eee----cCCceEEEEecCCCccccC
Q 046394          180 RKYEVL--QTL----PGHAKTLDFSRKDSGDFSG  207 (378)
Q Consensus       180 ~~~~~~--~~~----~~~i~~~~~sp~g~~~~~~  207 (378)
                      .++...  ..+    ......+.|||||++.++.
T Consensus       255 gt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~  288 (751)
T 2xe4_A          255 GKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIG  288 (751)
T ss_dssp             TSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEE
T ss_pred             CCCchhcEEEEecCCCceEEEEEECCCCCEEEEE
Confidence            765321  122    2334667888888875554

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=95.69  E-value=1.5  Score=41.69  Aligned_cols=158  Identities=8%  Similarity=-0.070  Sum_probs=93.1

Q ss_pred             ceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEE-eCCCcEEEEeCCCCeEEeec--cCCCeeEEEE------EE
Q 046394           25 AIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAA-GCKGYPYFYNRDGTELHCSK--EHGEVLKLQF------LL   95 (378)
Q Consensus        25 ~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~-~~dg~i~iwd~~~~~~~~~~--~~~~~~~l~~------~l   95 (378)
                      +.|..+++........+...-..+..|++.+.+..|+.+ ...+.|.+.+.+|.....+.  ....+..+++      ++
T Consensus        59 ~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY  138 (628)
T 4a0p_A           59 KTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMY  138 (628)
T ss_dssp             TEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEE
T ss_pred             CeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEE
Confidence            455555554332222222222457789998776656555 44678999998876554443  2234577777      33


Q ss_pred             EEE-eCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe--------------eeecCCCEEEEEEec
Q 046394           96 ASI-NKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT--------------MLCHQGPVSALAFHP  160 (378)
Q Consensus        96 ~s~-~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~--------------~~~h~~~v~~~~~sp  160 (378)
                      .+- +..+.|...++..... ..+.......+.|++++++..|+.+.....              +.........+++..
T Consensus       139 ~tD~g~~~~I~r~~~dG~~~-~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~v~~~~l~~P~glav~~  217 (628)
T 4a0p_A          139 WTEWGGKPKIDRAAMDGSER-TTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIADDLPHPFGLTQYQ  217 (628)
T ss_dssp             EEECSSSCEEEEEETTSCSC-EEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECCSCEEEEEEET
T ss_pred             EeCCCCCCEEEEEeCCCCce-EEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCceEEeeccCCCceEEEEEC
Confidence            333 2356788888754333 333334567889999998776666544322              222233455777765


Q ss_pred             CCCEEEEEECCCeEEEEEcCCcee
Q 046394          161 NGHLMATSGKDCKIKIWDLRKYEV  184 (378)
Q Consensus       161 ~g~~l~t~~~d~~i~iwd~~~~~~  184 (378)
                       +..++|-...+.|...|..+++.
T Consensus       218 -~~ly~tD~~~~~I~~~dk~tg~~  240 (628)
T 4a0p_A          218 -DYIYWTDWSRRSIERANKTSGQN  240 (628)
T ss_dssp             -TEEEEEETTTTEEEEEETTTCCS
T ss_pred             -CEEEEecCCCCEEEEEECCCCCc
Confidence             45555655678888888766543

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=95.61  E-value=0.8  Score=37.94  Aligned_cols=58  Identities=10%  Similarity=0.043  Sum_probs=40.2

Q ss_pred             eeeEEEec-cceeeeeecccceeeEEeecC-CCCceEEEEcCCCCEEEEEeCCCcEEEEeC
Q 046394           16 EKTWRIKQ-EAIAREVDILSSRNQYDIMLP-ELGPYTLDFTSSGRYMAAAGCKGYPYFYNR   74 (378)
Q Consensus        16 ~~~~~~~~-~~~i~~~d~~~~~~~~~l~~~-~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~   74 (378)
                      +..|.+.+ ++.|..+|+. ++.+..+... ....-.|++.+++.++++.-.++.+.+++.
T Consensus        39 ~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v   98 (255)
T 3qqz_A           39 NTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISL   98 (255)
T ss_dssp             TEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEE
T ss_pred             CEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEc
Confidence            44555443 5777778877 7766666432 246778999998887676656788999883

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=95.59  E-value=0.39  Score=38.67  Aligned_cols=81  Identities=15%  Similarity=0.076  Sum_probs=52.5

Q ss_pred             CCeeEEEEcCCCCEEEEEcCCCeeee-cC------------CCE--------EEEEEecCCCEEEEEECCCeEEEEEcCC
Q 046394          123 GRTDVIRVNPFNGVVSLGHSGGTMLC-HQ------------GPV--------SALAFHPNGHLMATSGKDCKIKIWDLRK  181 (378)
Q Consensus       123 ~~v~~~~~s~~~~~l~~~~~d~~~~~-h~------------~~v--------~~~~~sp~g~~l~t~~~d~~i~iwd~~~  181 (378)
                      ..+..++|+|+|.+.++  .+|.+.. ..            ..|        .++.|.|+|.+.++  .||.|+-++-.+
T Consensus        41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~  116 (236)
T 1tl2_A           41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQ  116 (236)
T ss_dssp             TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCC
T ss_pred             ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCc
Confidence            46779999998887777  4444211 11            122        57889999988877  569888887643


Q ss_pred             ceee------eee-c---CCceEEEEecCCCccccC
Q 046394          182 YEVL------QTL-P---GHAKTLDFSRKDSGDFSG  207 (378)
Q Consensus       182 ~~~~------~~~-~---~~i~~~~~sp~g~~~~~~  207 (378)
                      ....      ..+ .   ..+..|.|.|+|.+....
T Consensus       117 ~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~  152 (236)
T 1tl2_A          117 SDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH  152 (236)
T ss_dssp             STTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE
T ss_pred             CCCCceeccccEeccCCCCceEEEEECCCceEEEEe
Confidence            2111      111 1   467889999999864443

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=95.51  E-value=1.1  Score=39.06  Aligned_cols=30  Identities=17%  Similarity=0.268  Sum_probs=21.1

Q ss_pred             CCceEEEEcCCCCEEEEEe------------CCCcEEEEeCC
Q 046394           46 LGPYTLDFTSSGRYMAAAG------------CKGYPYFYNRD   75 (378)
Q Consensus        46 ~~v~~~~~sp~g~~l~~~~------------~dg~i~iwd~~   75 (378)
                      .++-.+...|+|..+++++            .+|.|.++|..
T Consensus        50 ~G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~   91 (355)
T 3sre_A           50 NGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLN   91 (355)
T ss_dssp             SCCCEEEECTTSEEEEEECCC-----------CCEEEEEETT
T ss_pred             CCcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecC
Confidence            4566788889885544442            68999999964

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=95.35  E-value=1.1  Score=37.96  Aligned_cols=119  Identities=8%  Similarity=-0.023  Sum_probs=57.0

Q ss_pred             ceeeeeecccceeeEEeecCCCCc-eEEEEcCCCCEEEEEeCC------CcEEEEeCCCCeEEeeccCCC---e-eEEEE
Q 046394           25 AIAREVDILSSRNQYDIMLPELGP-YTLDFTSSGRYMAAAGCK------GYPYFYNRDGTELHCSKEHGE---V-LKLQF   93 (378)
Q Consensus        25 ~~i~~~d~~~~~~~~~l~~~~~~v-~~~~~sp~g~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~---~-~~l~~   93 (378)
                      ..+.++|+.+.+-...-....... .+++. -++..++.|+.+      ..+.+||.....-..+.....   . ..+.+
T Consensus        70 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~  148 (306)
T 3ii7_A           70 KRMDCYNVVKDSWYSKLGPPTPRDSLAACA-AEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA  148 (306)
T ss_dssp             CEEEEEETTTTEEEEEECCSSCCBSCEEEE-ETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE
T ss_pred             ceEEEEeCCCCeEEECCCCCccccceeEEE-ECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE
Confidence            557778887765432222111111 12222 256677777654      468899966554443322211   1 22333


Q ss_pred             ---EEEEEeC---------CCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCC
Q 046394           94 ---LLASINK---------LGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGG  144 (378)
Q Consensus        94 ---~l~s~~~---------d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~  144 (378)
                         +++.|+.         -..+.+||+.+.+-...-..........+..-++.+++.|+.++
T Consensus       149 ~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~  211 (306)
T 3ii7_A          149 NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFVKDKIFAVGGQNG  211 (306)
T ss_dssp             TTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEET
T ss_pred             CCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEECCEEEEEeCCCC
Confidence               5555543         34588999987754322111111111111222566666666443

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=95.27  E-value=0.65  Score=39.97  Aligned_cols=79  Identities=6%  Similarity=-0.023  Sum_probs=44.7

Q ss_pred             CCeEEEEEcC---Cceeeeee------cC----------CceEEEEecCCCccccCCCC-Cc---------eEEEeec--
Q 046394          171 DCKIKIWDLR---KYEVLQTL------PG----------HAKTLDFSRKDSGDFSGSHN-YN---------RYMGYSM--  219 (378)
Q Consensus       171 d~~i~iwd~~---~~~~~~~~------~~----------~i~~~~~sp~g~~~~~~~~~-~~---------~~~~~~~--  219 (378)
                      +..|..||+.   +++.+...      .+          .++.++..++|...+.+... ..         ....+..  
T Consensus        99 ~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~~~~~~~~  178 (334)
T 2p9w_A           99 ASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTVSTFAWES  178 (334)
T ss_dssp             CCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCEEEEEECC
T ss_pred             CCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEEeeeeecC
Confidence            5667788887   66665444      11          36777777777765533222 11         1111111  


Q ss_pred             ---cCCcceeeeEEcCCCCeEEEecCCCeEEEE
Q 046394          220 ---VKGYQIGKVSFRPYEDVLGIGHSMGVSGIL  249 (378)
Q Consensus       220 ---~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~  249 (378)
                         ......+.+.++|+|..|++....|.+..+
T Consensus       179 ~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~f  211 (334)
T 2p9w_A          179 GNGGQRPGYSGITFDPHSNKLIAFGGPRALTAF  211 (334)
T ss_dssp             CCSSSCCSCSEEEEETTTTEEEEESSSSSEEEE
T ss_pred             CCcccccCcceEEEeCCCCEEEEEcCCCeEEEE
Confidence               011125688999999888777667754444

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=95.13  E-value=0.93  Score=36.52  Aligned_cols=27  Identities=11%  Similarity=-0.044  Sum_probs=20.8

Q ss_pred             CCceEEEEcCCCCEEEEEeCCCcEEEEeC
Q 046394           46 LGPYTLDFTSSGRYMAAAGCKGYPYFYNR   74 (378)
Q Consensus        46 ~~v~~~~~sp~g~~l~~~~~dg~i~iwd~   74 (378)
                      ..+..++|+|+|.+.++  .+|.++-.+.
T Consensus        41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~   67 (236)
T 1tl2_A           41 SNFKFLFLSPGGELYGV--LNDKIYKGTP   67 (236)
T ss_dssp             TTCSEEEECTTSCEEEE--ETTEEEEESC
T ss_pred             ccceeEEECCCccEEEE--eCCeEEEECC
Confidence            36779999999986666  6777777774

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=94.94  E-value=3.9  Score=41.97  Aligned_cols=154  Identities=8%  Similarity=-0.031  Sum_probs=86.1

Q ss_pred             cceeeeeecccceeeEEeecCC-CCceEEEE---cCC-CCEEEEEe----------CCCcEEEEeCCCCeEEeeccC--C
Q 046394           24 EAIAREVDILSSRNQYDIMLPE-LGPYTLDF---TSS-GRYMAAAG----------CKGYPYFYNRDGTELHCSKEH--G   86 (378)
Q Consensus        24 ~~~i~~~d~~~~~~~~~l~~~~-~~v~~~~~---sp~-g~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~--~   86 (378)
                      ...++++|..+.+.+..+.... ..+.|++.   ..+ ..+|++|.          ..|.|++|+..+..+..+...  .
T Consensus       806 ~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~  885 (1158)
T 3ei3_A          806 VHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVK  885 (1158)
T ss_dssp             EEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEES
T ss_pred             eEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcC
Confidence            3567888888887766665533 34555553   322 36888886          357899999654444433221  2


Q ss_pred             C-eeEEEE---EEEEEeCCCeEEEEEcCCCcEEE-EEecCCCCeeEEEEcCCCCEEEEEcCCCe----------------
Q 046394           87 E-VLKLQF---LLASINKLGQLRYQNVTMGEIVG-NFWTGLGRTDVIRVNPFNGVVSLGHSGGT----------------  145 (378)
Q Consensus        87 ~-~~~l~~---~l~s~~~d~~i~iwd~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~d~~----------------  145 (378)
                      + +++++-   .|++|- ...|++|++...+.+. ..... ..+..+.....++++++|..-..                
T Consensus       886 g~v~al~~~~g~Lla~i-g~~l~vy~l~~~~~L~~~~~~~-~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~  963 (1158)
T 3ei3_A          886 GAVYSMVEFNGKLLASI-NSTVRLYEWTTEKELRTECNHY-NNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEI  963 (1158)
T ss_dssp             SCEEEEEEETTEEEEEE-TTEEEEEEECTTSCEEEEEEEC-CCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEE
T ss_pred             CcCEEEeeeCCEEEEEc-CCEEEEEECCCCceEEEEeecc-ccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEE
Confidence            3 466654   444443 3789999998665333 11111 12333333334666666654333                


Q ss_pred             -eeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcC
Q 046394          146 -MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLR  180 (378)
Q Consensus       146 -~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~  180 (378)
                       -..+...++++.+--++ .++.+..+|.|.++...
T Consensus       964 a~D~~~~~vta~~~ld~~-t~l~aD~~gNl~vl~~~  998 (1158)
T 3ei3_A          964 ARDFNPNWMSAVEILDDD-NFLGAENAFNLFVCQKD  998 (1158)
T ss_dssp             EECCSCBCEEEEEEEETT-EEEEEETTSEEEEEEEC
T ss_pred             EeecccccEEEEEEEccC-cEEEEcCCCcEEEEecC
Confidence             11234456666665443 56667777777776553

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=94.90  E-value=2  Score=38.48  Aligned_cols=153  Identities=11%  Similarity=0.031  Sum_probs=89.2

Q ss_pred             eEEEeccceeeeeeccc-ceeeEEeecCC----CCceEEEEcCCCCEEEEEeC-------CCcEEEEeCCCCeEEeeccC
Q 046394           18 TWRIKQEAIAREVDILS-SRNQYDIMLPE----LGPYTLDFTSSGRYMAAAGC-------KGYPYFYNRDGTELHCSKEH   85 (378)
Q Consensus        18 ~~~~~~~~~i~~~d~~~-~~~~~~l~~~~----~~v~~~~~sp~g~~l~~~~~-------dg~i~iwd~~~~~~~~~~~~   85 (378)
                      ++.+-.+..|+.|++.. ..++..+..|.    .-|..-..+++.++++..|-       .|.+.+|+.+......+.+|
T Consensus       118 ~l~lVT~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGh  197 (494)
T 1bpo_A          118 TVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGH  197 (494)
T ss_dssp             EEEEECSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEEEECCS
T ss_pred             eEEEEcCCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccchheee
Confidence            34444556677787753 23333344332    23556666778887654332       46778888777777777777


Q ss_pred             CCe-eEEEE--------EEEEEeC---CCeEEEEEcCCC-cEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCeeeecCCC
Q 046394           86 GEV-LKLQF--------LLASINK---LGQLRYQNVTMG-EIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGTMLCHQGP  152 (378)
Q Consensus        86 ~~~-~~l~~--------~l~s~~~---d~~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~~~~h~~~  152 (378)
                      .+. ..+..        +++.+..   .+.++|.++... ..-   .........+-|.|+.              -.+-
T Consensus       198 aa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~---~~f~kk~vdv~fppe~--------------~~DF  260 (494)
T 1bpo_A          198 AASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGN---QPFPKKAVDVFFPPEA--------------QNDF  260 (494)
T ss_dssp             EEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTC---CCCCCEEEECCCCTTS--------------TTCC
T ss_pred             eeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCC---CCccceeeeeeCCccc--------------ccCc
Confidence            654 33222        3333333   256777776432 000   0011112233344432              2344


Q ss_pred             EEEEEEecCCCEEEEEECCCeEEEEEcCCceeeee
Q 046394          153 VSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQT  187 (378)
Q Consensus       153 v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~  187 (378)
                      ..++..|+.-..+...+.-|.|.+||+.++.++..
T Consensus       261 Pvamqvs~kygviyviTK~G~i~lyDleTgt~i~~  295 (494)
T 1bpo_A          261 PVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYM  295 (494)
T ss_dssp             EEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             eeEEEecccCCEEEEEecCceEEEEecccceeeee
Confidence            56889999877899999999999999999887654

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=94.88  E-value=1.2  Score=37.99  Aligned_cols=83  Identities=6%  Similarity=0.036  Sum_probs=44.4

Q ss_pred             EEEecCCCEEEEEEC-CCeEEEEEcCCceeeeeecCCceEEEEecCCCccccCCCCC-ceEEEeeccCCcc---e---ee
Q 046394          156 LAFHPNGHLMATSGK-DCKIKIWDLRKYEVLQTLPGHAKTLDFSRKDSGDFSGSHNY-NRYMGYSMVKGYQ---I---GK  227 (378)
Q Consensus       156 ~~~sp~g~~l~t~~~-d~~i~iwd~~~~~~~~~~~~~i~~~~~sp~g~~~~~~~~~~-~~~~~~~~~~~~~---v---~~  227 (378)
                      .+|+|+|+.|.-.+. ...|.+-++..+.....+.+... ..++|+|.+..|..... ..+..... .+..   +   ..
T Consensus       150 ~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~l-dG~~~~~Lt~~~~  227 (302)
T 3s25_A          150 FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYDCNCY-KPVVLDDTNVYYMDVNRDNAIVHVNI-NNPNPVVLTEANI  227 (302)
T ss_dssp             CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEECSCEE-EEEEEETTEEEEEEGGGTTEEEEECS-SSCCCEECSCSCE
T ss_pred             eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeCCCcc-ceeeecCCEEEEEEcCCCcEEEEEEC-CCCCeEEEeCCCc
Confidence            456788888776654 56788888766543322333222 34668888766643221 12222221 1111   1   11


Q ss_pred             eEEcCCCCeEEEe
Q 046394          228 VSFRPYEDVLGIG  240 (378)
Q Consensus       228 ~~~sp~g~~l~~~  240 (378)
                      ..|+|+|..|..+
T Consensus       228 ~~~~~~g~~Iy~~  240 (302)
T 3s25_A          228 EHYNVYGSLIFYQ  240 (302)
T ss_dssp             EEEEEETTEEEEE
T ss_pred             ceEEECCCEEEEE
Confidence            3478888877655

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=94.41  E-value=1.5  Score=36.97  Aligned_cols=118  Identities=7%  Similarity=-0.117  Sum_probs=56.0

Q ss_pred             ceeeeeecccce---eeEE--eecCCCCceEEEEcCCCCEEEEEeCC-----CcEEEEeCCCCeEEeeccCC---Ce-eE
Q 046394           25 AIAREVDILSSR---NQYD--IMLPELGPYTLDFTSSGRYMAAAGCK-----GYPYFYNRDGTELHCSKEHG---EV-LK   90 (378)
Q Consensus        25 ~~i~~~d~~~~~---~~~~--l~~~~~~v~~~~~sp~g~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~---~~-~~   90 (378)
                      ..+.++|+.+..   -...  +....... +++. .++..++.|+.+     ..+.+||.....-..+....   .. ..
T Consensus        78 ~~~~~~d~~~~~~~~W~~~~~~p~~r~~~-~~~~-~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~  155 (301)
T 2vpj_A           78 SSVECLDYTADEDGVWYSVAPMNVRRGLA-GATT-LGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGL  155 (301)
T ss_dssp             CCEEEEETTCCTTCCCEEECCCSSCCBSC-EEEE-ETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEE
T ss_pred             ceEEEEECCCCCCCeeEECCCCCCCccce-eEEE-ECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceE
Confidence            457778877765   2211  11111111 2222 256666677653     35888886554433332211   11 23


Q ss_pred             EEE---EEEEEeCC-----CeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCC
Q 046394           91 LQF---LLASINKL-----GQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGG  144 (378)
Q Consensus        91 l~~---~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~  144 (378)
                      +.+   +++.|+.+     ..+.+||+.+.+-...-..........+..-++.+++.|+.++
T Consensus       156 ~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~  217 (301)
T 2vpj_A          156 VVASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDG  217 (301)
T ss_dssp             EEETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCS
T ss_pred             EEECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEECCEEEEEeCCCC
Confidence            333   55666544     4588999887654332111111111112222566667766543

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=94.36  E-value=0.86  Score=41.79  Aligned_cols=114  Identities=13%  Similarity=0.084  Sum_probs=70.1

Q ss_pred             EEEEEeCCCeEEEEEcCCCcEEEEEecC---CCCeeEEEE-------cCCCCEEEEEcCCC-----e-----eeecC---
Q 046394           94 LLASINKLGQLRYQNVTMGEIVGNFWTG---LGRTDVIRV-------NPFNGVVSLGHSGG-----T-----MLCHQ---  150 (378)
Q Consensus        94 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~---~~~v~~~~~-------s~~~~~l~~~~~d~-----~-----~~~h~---  150 (378)
                      ++++....+.|++.|+.++.....+...   ......++|       ++++..|+++...+     .     +....   
T Consensus       154 Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~  233 (496)
T 3kya_A          154 LYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGT  233 (496)
T ss_dssp             EEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSC
T ss_pred             EEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCc
Confidence            3444444466888888776655444332   134788899       99998666665443     1     11011   


Q ss_pred             -------------CCEEEEEEec-CCCEEEEEECCCeEEEEEcC-------Ccee--------------eeee--cCCce
Q 046394          151 -------------GPVSALAFHP-NGHLMATSGKDCKIKIWDLR-------KYEV--------------LQTL--PGHAK  193 (378)
Q Consensus       151 -------------~~v~~~~~sp-~g~~l~t~~~d~~i~iwd~~-------~~~~--------------~~~~--~~~i~  193 (378)
                                   .....++++| ++.++++-..++.|..+|+.       ++..              +..+  .....
T Consensus       234 ~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~  313 (496)
T 3kya_A          234 FDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEF  313 (496)
T ss_dssp             CSTTSCEEEEEEESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCE
T ss_pred             eeecccceeeccCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCce
Confidence                         1224677899 56666677788899999997       5543              1222  24568


Q ss_pred             EEEEecCCCc-cccC
Q 046394          194 TLDFSRKDSG-DFSG  207 (378)
Q Consensus       194 ~~~~sp~g~~-~~~~  207 (378)
                      .++|+|+|.+ .+.+
T Consensus       314 ~ia~~p~G~~lYvaD  328 (496)
T 3kya_A          314 QIFIHPTGKYAYFGV  328 (496)
T ss_dssp             EEEECTTSSEEEEEE
T ss_pred             EEEEcCCCCEEEEEe
Confidence            9999999984 4444

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=94.34  E-value=2.1  Score=36.13  Aligned_cols=119  Identities=8%  Similarity=-0.053  Sum_probs=56.2

Q ss_pred             ceeeeeecccceeeEEeecCCCCc-eEEEEcCCCCEEEEEeCC-----CcEEEEeCCCCe---EEeecc---CCCeeE-E
Q 046394           25 AIAREVDILSSRNQYDIMLPELGP-YTLDFTSSGRYMAAAGCK-----GYPYFYNRDGTE---LHCSKE---HGEVLK-L   91 (378)
Q Consensus        25 ~~i~~~d~~~~~~~~~l~~~~~~v-~~~~~sp~g~~l~~~~~d-----g~i~iwd~~~~~---~~~~~~---~~~~~~-l   91 (378)
                      ..+.++|+.+.+-...-....... .+++ ..++..++.|+.+     ..+.+||.....   -..+..   .....+ +
T Consensus        31 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~-~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~  109 (301)
T 2vpj_A           31 DVVEKYDPKTQEWSFLPSITRKRRYVASV-SLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGAT  109 (301)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBSCEEE-EETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEE
T ss_pred             eEEEEEcCCCCeEEeCCCCChhhccccEE-EECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEE
Confidence            356778887765322111111111 1222 2356677777754     368999954333   222221   111123 3


Q ss_pred             EE---EEEEEeCC-----CeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCC
Q 046394           92 QF---LLASINKL-----GQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGG  144 (378)
Q Consensus        92 ~~---~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~  144 (378)
                      .+   +++.|+.+     ..+.+||+.+.+-...-..........+...++.+++.|+.++
T Consensus       110 ~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~  170 (301)
T 2vpj_A          110 TLGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYDG  170 (301)
T ss_dssp             EETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEETTEEEEECCBCS
T ss_pred             EECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEECCEEEEECCCCC
Confidence            33   55666543     3688999887654332221111111112222566777776554

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=94.19  E-value=2.1  Score=37.40  Aligned_cols=32  Identities=16%  Similarity=0.119  Sum_probs=25.0

Q ss_pred             CCceEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 046394           46 LGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGT   77 (378)
Q Consensus        46 ~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~   77 (378)
                      ..+..|+|.|+|++|+++...|.|++++.++.
T Consensus        18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~   49 (353)
T 2g8s_A           18 DHPWALAFLPDNHGMLITLRGGELRHWQAGKG   49 (353)
T ss_dssp             SSEEEEEECSTTCCEEEEETTTEEEEEETTTE
T ss_pred             CCcEEEEEcCCCCEEEEEeCCceEEEEeCCCc
Confidence            46789999999984555667899999986554

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=94.18  E-value=2  Score=36.29  Aligned_cols=119  Identities=15%  Similarity=0.031  Sum_probs=55.2

Q ss_pred             ceeeeeecccceeeEEeecCCCC-ceEEEEcCCCCEEEEEeCCC-----cEEEEeCCCCeEEeeccCCC---eeEE-EE-
Q 046394           25 AIAREVDILSSRNQYDIMLPELG-PYTLDFTSSGRYMAAAGCKG-----YPYFYNRDGTELHCSKEHGE---VLKL-QF-   93 (378)
Q Consensus        25 ~~i~~~d~~~~~~~~~l~~~~~~-v~~~~~sp~g~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~---~~~l-~~-   93 (378)
                      ..+.+||..+.+-...-...... -.+++. .++..++.|+.++     .+.+||.....-..+.....   ..++ .+ 
T Consensus        77 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~  155 (302)
T 2xn4_A           77 RTVDSYDPVKDQWTSVANMRDRRSTLGAAV-LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVG  155 (302)
T ss_dssp             CCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEET
T ss_pred             cceEEECCCCCceeeCCCCCccccceEEEE-ECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEEC
Confidence            34667777766532221111111 112222 2566777777653     57788865554443322221   1223 33 


Q ss_pred             --EEEEEeC-------CCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCC
Q 046394           94 --LLASINK-------LGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGG  144 (378)
Q Consensus        94 --~l~s~~~-------d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~  144 (378)
                        +++.|+.       -..+.+||+.+.+-...-..........+..-++.+++.|+.++
T Consensus       156 ~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~  215 (302)
T 2xn4_A          156 GLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHDG  215 (302)
T ss_dssp             TEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBSS
T ss_pred             CEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEECCEEEEECCCCC
Confidence              5555543       23588999887654332111111111111122566677766544

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=93.62  E-value=0.11  Score=47.77  Aligned_cols=114  Identities=13%  Similarity=-0.013  Sum_probs=70.5

Q ss_pred             eeeeeccc----ce-eeEEeecCCCCceEEEEcCCCCEEEEEeC-CCcEEEEeCC-------CCe-------EEeeccCC
Q 046394           27 AREVDILS----SR-NQYDIMLPELGPYTLDFTSSGRYMAAAGC-KGYPYFYNRD-------GTE-------LHCSKEHG   86 (378)
Q Consensus        27 i~~~d~~~----~~-~~~~l~~~~~~v~~~~~sp~g~~l~~~~~-dg~i~iwd~~-------~~~-------~~~~~~~~   86 (378)
                      +.+.|...    +. ..+-+.. ...+.++.++|||+++++++. +.++.|+|.+       +..       ........
T Consensus       300 v~ViD~~~~~~~~~~~~~~iP~-pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~Gl  378 (638)
T 3sbq_A          300 TPVLDGRKKDGKDSKFTRYVPV-PKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGL  378 (638)
T ss_dssp             CCEEECSCBTTBCCSSEEEEEE-SSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCS
T ss_pred             eeEEccccccccCCceEEEEeC-CCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCC
Confidence            56666654    22 2333343 366789999999999888776 8899999953       211       23333344


Q ss_pred             CeeEEEE-----EEEEEeCCCeEEEEEcCCC----------cEEEEEecCCCCeeEE-----EEcCCCCEEEEEc
Q 046394           87 EVLKLQF-----LLASINKLGQLRYQNVTMG----------EIVGNFWTGLGRTDVI-----RVNPFNGVVSLGH  141 (378)
Q Consensus        87 ~~~~l~~-----~l~s~~~d~~i~iwd~~~~----------~~~~~~~~~~~~v~~~-----~~s~~~~~l~~~~  141 (378)
                      ++...+|     ...|.--|..|.-|++...          ..+..+..|..+-...     .-.|+|++|++..
T Consensus       379 GPlHt~Fd~~G~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~ln  453 (638)
T 3sbq_A          379 GPLHTTFDGRGNAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALS  453 (638)
T ss_dssp             CEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEE
T ss_pred             cccEEEECCCCceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEec
Confidence            5678888     4556668999999999753          3556666554322211     1245566655543

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=93.60  E-value=1.3  Score=45.91  Aligned_cols=153  Identities=11%  Similarity=0.024  Sum_probs=88.2

Q ss_pred             eEEEeccceeeeeeccc-ceeeEEeecC----CCCceEEEEcCCCCEEEEEe-------CCCcEEEEeCCCCeEEeeccC
Q 046394           18 TWRIKQEAIAREVDILS-SRNQYDIMLP----ELGPYTLDFTSSGRYMAAAG-------CKGYPYFYNRDGTELHCSKEH   85 (378)
Q Consensus        18 ~~~~~~~~~i~~~d~~~-~~~~~~l~~~----~~~v~~~~~sp~g~~l~~~~-------~dg~i~iwd~~~~~~~~~~~~   85 (378)
                      ++.+-.+..|..|++.. ..++..+..|    ..-|..-..+++.++++..|       -.|.+.+|+.+......+.||
T Consensus       118 ~l~lVT~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ~iegh  197 (1630)
T 1xi4_A          118 TVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGH  197 (1630)
T ss_pred             eeEEEcCCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccchhhhHh
Confidence            44444556677788753 2232233333    23466677788888766433       257888898776666666666


Q ss_pred             CCe-eEEEE--------EEEEEe---CCCeEEEEEcCCC-cEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCeeeecCCC
Q 046394           86 GEV-LKLQF--------LLASIN---KLGQLRYQNVTMG-EIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGTMLCHQGP  152 (378)
Q Consensus        86 ~~~-~~l~~--------~l~s~~---~d~~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~~~~h~~~  152 (378)
                      .+. ..+..        +++.+.   ..+.++|.++... ...   .........+-|.|+.              -.+-
T Consensus       198 a~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~---~~f~kk~~~~~~~~~~--------------~~Df  260 (1630)
T 1xi4_A          198 AASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGN---QPFPKKAVDVFFPPEA--------------QNDF  260 (1630)
T ss_pred             HhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCC---CCCccccccccCCccc--------------ccCc
Confidence            543 22222        222111   2357777777432 110   1111223334455432              1233


Q ss_pred             EEEEEEecCCCEEEEEECCCeEEEEEcCCceeeee
Q 046394          153 VSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQT  187 (378)
Q Consensus       153 v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~  187 (378)
                      ..++..|+.-..+...+.-|.|.+||+.++.++..
T Consensus       261 pv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~  295 (1630)
T 1xi4_A          261 PVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYM  295 (1630)
T ss_pred             ceEEEeccccCEEEEEecCceEEEEecccchhhhh
Confidence            45788888777888888999999999999988654

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=93.55  E-value=5.2  Score=37.96  Aligned_cols=166  Identities=11%  Similarity=0.033  Sum_probs=98.2

Q ss_pred             eeeEEEeccceeeeeecccceee-EEeecC-CCCceEEEEcCCCCEEEEEe-CCCcEEEEeCCCCeEEee-ccC-CCeeE
Q 046394           16 EKTWRIKQEAIAREVDILSSRNQ-YDIMLP-ELGPYTLDFTSSGRYMAAAG-CKGYPYFYNRDGTELHCS-KEH-GEVLK   90 (378)
Q Consensus        16 ~~~~~~~~~~~i~~~d~~~~~~~-~~l~~~-~~~v~~~~~sp~g~~l~~~~-~dg~i~iwd~~~~~~~~~-~~~-~~~~~   90 (378)
                      +..+.+.....|+..++...... ..+... -..+.+++|++.+..|+.+. ..+.|+.++.+|.....+ ... ..+..
T Consensus       317 ~~~Ll~~~~~~i~~i~l~~~~~~~~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~G  396 (619)
T 3s94_A          317 TELLLLARRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDG  396 (619)
T ss_dssp             SEEEEEEESSCEEEEESSSTTCCCEECCCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCE
T ss_pred             ceEEEEEcccceEEEecCCCccceeEEeccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCc
Confidence            34455566666777777655321 222222 24578999998666666554 477899999877543333 222 23445


Q ss_pred             EEE------EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEc-----------CCCe-----eee
Q 046394           91 LQF------LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGH-----------SGGT-----MLC  148 (378)
Q Consensus        91 l~~------~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-----------~d~~-----~~~  148 (378)
                      +++      ++++-+..+.|.+.++........+.........|++.|....|+.+.           .||.     ...
T Consensus       397 lAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~l~~~  476 (619)
T 3s94_A          397 IAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLVNT  476 (619)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECS
T ss_pred             eEEecccCcEEEEeCCCCcEEEEeCCCCeEEEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEEEEeC
Confidence            555      556666678999999864433222333456788999999754444332           2222     112


Q ss_pred             cCCCEEEEEEecCCCEEEEEE-CCCeEEEEEcCC
Q 046394          149 HQGPVSALAFHPNGHLMATSG-KDCKIKIWDLRK  181 (378)
Q Consensus       149 h~~~v~~~~~sp~g~~l~t~~-~d~~i~iwd~~~  181 (378)
                      .-...+.|++++++..|..+. ..+.|..+++..
T Consensus       477 ~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG  510 (619)
T 3s94_A          477 SLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDG  510 (619)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEESSS
T ss_pred             CCCCCeeeEEcccCCEEEEEECCCCEEEEEecCC
Confidence            234667899998655555544 456788888753

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=93.02  E-value=5.1  Score=36.34  Aligned_cols=30  Identities=13%  Similarity=0.088  Sum_probs=22.1

Q ss_pred             CCceEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 046394           46 LGPYTLDFTSSGRYMAAAGCKGYPYFYNRD   75 (378)
Q Consensus        46 ~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~   75 (378)
                      ..+.+|+|.|+|+++++-...+.|++++..
T Consensus        27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~   56 (454)
T 1cru_A           27 NKPHALLWGPDNQIWLTERATGKILRVNPE   56 (454)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTT
T ss_pred             CCceEEEEcCCCcEEEEEcCCCEEEEEECC
Confidence            567899999999866654333469888853

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=92.49  E-value=3  Score=35.20  Aligned_cols=90  Identities=7%  Similarity=-0.158  Sum_probs=47.7

Q ss_pred             cceeeeeecccceeeEE--eecCCCCceEEEEcCCCCEEEEEeCC----CcEEEEeCCCCeEEeeccCCC---e-eEEEE
Q 046394           24 EAIAREVDILSSRNQYD--IMLPELGPYTLDFTSSGRYMAAAGCK----GYPYFYNRDGTELHCSKEHGE---V-LKLQF   93 (378)
Q Consensus        24 ~~~i~~~d~~~~~~~~~--l~~~~~~v~~~~~sp~g~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~---~-~~l~~   93 (378)
                      ...+.+||..+.+-...  +......- +++. -++..++.|+.+    ..+.+||.....-..+.....   . ..+.+
T Consensus        23 ~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~  100 (306)
T 3ii7_A           23 PQSCRYFNPKDYSWTDIRCPFEKRRDA-ACVF-WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA  100 (306)
T ss_dssp             TTSEEEEETTTTEEEECCCCSCCCBSC-EEEE-ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE
T ss_pred             CceEEEecCCCCCEecCCCCCccccee-EEEE-ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE
Confidence            34677788877654321  11111111 2222 356667777654    578889965544333322211   1 22333


Q ss_pred             ---EEEEEeCC------CeEEEEEcCCCcEE
Q 046394           94 ---LLASINKL------GQLRYQNVTMGEIV  115 (378)
Q Consensus        94 ---~l~s~~~d------~~i~iwd~~~~~~~  115 (378)
                         +++.|+.+      ..+.+||+.+.+-.
T Consensus       101 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~  131 (306)
T 3ii7_A          101 EGKIYTSGGSEVGNSALYLFECYDTRTESWH  131 (306)
T ss_dssp             TTEEEEECCBBTTBSCCCCEEEEETTTTEEE
T ss_pred             CCEEEEECCCCCCCcEeeeEEEEeCCCCceE
Confidence               66666654      45889998876543

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=92.48  E-value=5  Score=34.90  Aligned_cols=56  Identities=14%  Similarity=0.134  Sum_probs=33.3

Q ss_pred             CCEEEEEEecC---CCE-EEEEECC-----CeEEEEEcCCce-----ee-eeec------CCceEEEEecCCCcccc
Q 046394          151 GPVSALAFHPN---GHL-MATSGKD-----CKIKIWDLRKYE-----VL-QTLP------GHAKTLDFSRKDSGDFS  206 (378)
Q Consensus       151 ~~v~~~~~sp~---g~~-l~t~~~d-----~~i~iwd~~~~~-----~~-~~~~------~~i~~~~~sp~g~~~~~  206 (378)
                      .....|+|+|+   +.. +++-+..     +.|..|++..+.     .+ ..++      .....++|+|||...+.
T Consensus        75 ~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~  151 (352)
T 2ism_A           75 SGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVT  151 (352)
T ss_dssp             CSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEE
T ss_pred             CCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEE
Confidence            45788999997   444 4443332     567788776431     11 1122      13478999999976444

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=92.45  E-value=4.3  Score=34.12  Aligned_cols=90  Identities=13%  Similarity=0.021  Sum_probs=45.4

Q ss_pred             ceeeeeecccceeeEEeecCCCCc-eEEEEcCCCCEEEEEeCC-----CcEEEEeCCCCeEEeeccCCC---e-eEEEE-
Q 046394           25 AIAREVDILSSRNQYDIMLPELGP-YTLDFTSSGRYMAAAGCK-----GYPYFYNRDGTELHCSKEHGE---V-LKLQF-   93 (378)
Q Consensus        25 ~~i~~~d~~~~~~~~~l~~~~~~v-~~~~~sp~g~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~---~-~~l~~-   93 (378)
                      ..+.++|+.+..-...-....... .+++. -++..++.|+.+     ..+.+||.....-..+.....   . ..+.+ 
T Consensus        30 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~  108 (302)
T 2xn4_A           30 RSVECYDFKEERWHQVAELPSRRCRAGMVY-MAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVLN  108 (302)
T ss_dssp             CCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEET
T ss_pred             CcEEEEcCcCCcEeEcccCCcccccceEEE-ECCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEEC
Confidence            346778887765322111111111 12222 256667777654     358889965554444332221   1 22333 


Q ss_pred             --EEEEEeCC-----CeEEEEEcCCCcEE
Q 046394           94 --LLASINKL-----GQLRYQNVTMGEIV  115 (378)
Q Consensus        94 --~l~s~~~d-----~~i~iwd~~~~~~~  115 (378)
                        +++.|+.+     ..+.+||+.+.+-.
T Consensus       109 ~~iyv~GG~~~~~~~~~~~~~d~~~~~W~  137 (302)
T 2xn4_A          109 GLLYAVGGFDGSTGLSSVEAYNIKSNEWF  137 (302)
T ss_dssp             TEEEEEEEECSSCEEEEEEEEETTTTEEE
T ss_pred             CEEEEEcCCCCCccCceEEEEeCCCCeEe
Confidence              55666644     35778888776543

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=92.42  E-value=9.8  Score=38.16  Aligned_cols=38  Identities=18%  Similarity=0.369  Sum_probs=33.9

Q ss_pred             CCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee
Q 046394          151 GPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL  188 (378)
Q Consensus       151 ~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~  188 (378)
                      ..+.+++..++..+++|.+.|+++|||++.+++++.+.
T Consensus       236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~  273 (950)
T 4gq2_M          236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI  273 (950)
T ss_dssp             TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred             ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence            45778888888899999999999999999999998876

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=92.34  E-value=3  Score=35.29  Aligned_cols=117  Identities=9%  Similarity=-0.158  Sum_probs=55.1

Q ss_pred             ceeeeeecccceeeEEeecCCCCc-eEEEEcCCCCEEEEEeC----C-----CcEEEEeCCCCeEEeeccCCC--e--eE
Q 046394           25 AIAREVDILSSRNQYDIMLPELGP-YTLDFTSSGRYMAAAGC----K-----GYPYFYNRDGTELHCSKEHGE--V--LK   90 (378)
Q Consensus        25 ~~i~~~d~~~~~~~~~l~~~~~~v-~~~~~sp~g~~l~~~~~----d-----g~i~iwd~~~~~~~~~~~~~~--~--~~   90 (378)
                      ..+.++|..+.+-...-....... .+++. .++..++.|+.    +     ..+.+||.....-..+.....  .  ..
T Consensus        39 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~  117 (308)
T 1zgk_A           39 SYLEAYNPSNGTWLRLADLQVPRSGLAGCV-VGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGV  117 (308)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEE
T ss_pred             ceEEEEcCCCCeEeECCCCCcccccceEEE-ECCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEE
Confidence            456778877765432211111111 12222 25666666665    2     468889965554444332211  1  22


Q ss_pred             EEE---EEEEEeCC-----CeEEEEEcCCCcEEEEEecCC--CCeeEEEEcCCCCEEEEEcCCC
Q 046394           91 LQF---LLASINKL-----GQLRYQNVTMGEIVGNFWTGL--GRTDVIRVNPFNGVVSLGHSGG  144 (378)
Q Consensus        91 l~~---~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~~~~d~  144 (378)
                      +.+   +++.|+.+     ..+.+||+.+.+-...-....  ....++.+  ++.+++.|+.++
T Consensus       118 ~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~  179 (308)
T 1zgk_A          118 GVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDG  179 (308)
T ss_dssp             EEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCS
T ss_pred             EEECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCCCC
Confidence            333   55555532     458889987765432211111  11122222  566666666543

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=92.27  E-value=4.2  Score=34.41  Aligned_cols=88  Identities=11%  Similarity=-0.069  Sum_probs=44.9

Q ss_pred             ceeeeeecccceeeEE--eecCCCCceEEEEcCCCCEEEEEeCC-----CcEEEEeCCCCeEEeeccCCC---e-eEEEE
Q 046394           25 AIAREVDILSSRNQYD--IMLPELGPYTLDFTSSGRYMAAAGCK-----GYPYFYNRDGTELHCSKEHGE---V-LKLQF   93 (378)
Q Consensus        25 ~~i~~~d~~~~~~~~~--l~~~~~~v~~~~~sp~g~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~---~-~~l~~   93 (378)
                      ..+.++|+.+.+-...  +........++.+  ++..++.|+.+     ..+.+||.....-..+.....   . ..+.+
T Consensus        90 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~  167 (308)
T 1zgk_A           90 SALDCYNPMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL  167 (308)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE
T ss_pred             ceEEEECCCCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE
Confidence            3467788776653221  1111111222222  56666666643     368889865554443322211   1 23333


Q ss_pred             ---EEEEEeCC-----CeEEEEEcCCCcE
Q 046394           94 ---LLASINKL-----GQLRYQNVTMGEI  114 (378)
Q Consensus        94 ---~l~s~~~d-----~~i~iwd~~~~~~  114 (378)
                         +++.|+.+     ..+.+||+.+.+-
T Consensus       168 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W  196 (308)
T 1zgk_A          168 NRLLYAVGGFDGTNRLNSAECYYPERNEW  196 (308)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTTTEE
T ss_pred             CCEEEEEeCCCCCCcCceEEEEeCCCCeE
Confidence               55666543     4588999877654

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=92.11  E-value=5.6  Score=34.63  Aligned_cols=31  Identities=16%  Similarity=0.240  Sum_probs=24.7

Q ss_pred             CCceEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 046394           46 LGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGT   77 (378)
Q Consensus        46 ~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~   77 (378)
                      ..+..|+|.|+|+ |+++..+|.|++++.++.
T Consensus        29 ~~P~~ia~~pdG~-l~V~e~~g~I~~~d~~G~   59 (354)
T 3a9g_A           29 EVPWSIAPLGGGR-YLVTERPGRLVLISPSGK   59 (354)
T ss_dssp             SCEEEEEEEETTE-EEEEETTTEEEEECSSCE
T ss_pred             CCCeEEEEcCCCe-EEEEeCCCEEEEEeCCCc
Confidence            5688999999997 555567799999986665

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=91.26  E-value=5  Score=34.00  Aligned_cols=116  Identities=11%  Similarity=-0.124  Sum_probs=54.0

Q ss_pred             eeeeecccceeeEE--eecCCCCceEEEEcCCCCEEEEEeCC--------CcEEEEeCCCCeEEeeccCCC---e-eEEE
Q 046394           27 AREVDILSSRNQYD--IMLPELGPYTLDFTSSGRYMAAAGCK--------GYPYFYNRDGTELHCSKEHGE---V-LKLQ   92 (378)
Q Consensus        27 i~~~d~~~~~~~~~--l~~~~~~v~~~~~sp~g~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~---~-~~l~   92 (378)
                      +..||..+.+-...  +....... +++.. ++..++.|+.+        ..+.+||.....-..+.....   . ..+.
T Consensus        69 ~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~  146 (315)
T 4asc_A           69 FLQFDHLDSEWLGMPPLPSPRCLF-GLGEA-LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS  146 (315)
T ss_dssp             EEEEETTTTEEEECCCBSSCEESC-EEEEE-TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE
T ss_pred             eEEecCCCCeEEECCCCCcchhce-eEEEE-CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE
Confidence            66778777653221  11111111 22222 45666666632        368899965544333322111   1 2233


Q ss_pred             E---EEEEEeC-C-----CeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCC
Q 046394           93 F---LLASINK-L-----GQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGG  144 (378)
Q Consensus        93 ~---~l~s~~~-d-----~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~  144 (378)
                      +   +++.|+. +     ..+.+||+.+.+-...-..........+..-++.+++.|+.++
T Consensus       147 ~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~  207 (315)
T 4asc_A          147 HMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVHDGRIIVAAGVTD  207 (315)
T ss_dssp             ETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEEEEECS
T ss_pred             ECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEECCEEEEEeccCC
Confidence            3   5666665 2     4688999887653322111111111112222566666666544

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=91.01  E-value=16  Score=37.62  Aligned_cols=125  Identities=14%  Similarity=-0.004  Sum_probs=70.2

Q ss_pred             eeEEEeccceeeeeecccceeeEEeecCC-CCceEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEe---eccCCCeeEEE
Q 046394           17 KTWRIKQEAIAREVDILSSRNQYDIMLPE-LGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTELHC---SKEHGEVLKLQ   92 (378)
Q Consensus        17 ~~~~~~~~~~i~~~d~~~~~~~~~l~~~~-~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~---~~~~~~~~~l~   92 (378)
                      ..+.+...+ |++.+......+..+.... ..|...+.+  +.+++.++ ++.+.++.++...+..   ..-...+.|++
T Consensus       485 ~ivQVt~~~-Irli~~~~~~~~~~w~~p~~~~I~~As~n--~~~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~  560 (1158)
T 3ei3_A          485 QLIQITSAS-VRLVSQEPKALVSEWKEPQAKNISVASCN--SSQVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLD  560 (1158)
T ss_dssp             EEEEEESSC-EEEEESSSCCEEEEECCTTCCCCCEEEEC--SSEEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEE
T ss_pred             eEEEEecCE-EEEEECCCCeEEEEEECCCCCEEEEEEeC--CCEEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEE
Confidence            344444333 4555554444555554432 346666554  34677665 5677777643222221   22223457776


Q ss_pred             E-----------EEEEEeC-CCeEEEEEcCCCcEEEEEecC-CCCeeEEEEc--CCCCEEEEEcCCCe
Q 046394           93 F-----------LLASINK-LGQLRYQNVTMGEIVGNFWTG-LGRTDVIRVN--PFNGVVSLGHSGGT  145 (378)
Q Consensus        93 ~-----------~l~s~~~-d~~i~iwd~~~~~~~~~~~~~-~~~v~~~~~s--~~~~~l~~~~~d~~  145 (378)
                      +           +++.|.. |++|+|+++.+.+.+...... ...+.++.+.  ....+|.+|..||.
T Consensus       561 i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~  628 (1158)
T 3ei3_A          561 ITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGA  628 (1158)
T ss_dssp             CCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSE
T ss_pred             eecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCe
Confidence            6           6777775 999999999887766544322 1234444333  23357888888887

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=90.22  E-value=7.8  Score=32.87  Aligned_cols=64  Identities=19%  Similarity=0.079  Sum_probs=38.8

Q ss_pred             EEEEcCCCCEEEEEe----CCCcEEEEeCCCCeEEeeccCCCeeEEEE----EEEEEeCCCeEEEEEcCCCcE
Q 046394           50 TLDFTSSGRYMAAAG----CKGYPYFYNRDGTELHCSKEHGEVLKLQF----LLASINKLGQLRYQNVTMGEI  114 (378)
Q Consensus        50 ~~~~sp~g~~l~~~~----~dg~i~iwd~~~~~~~~~~~~~~~~~l~~----~l~s~~~d~~i~iwd~~~~~~  114 (378)
                      +..|++++.+|+...    ....|+..+++|.....+..+.. ..+.|    ++.+......|...++..+..
T Consensus       108 ~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~~~-~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~  179 (302)
T 3s25_A          108 CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNHYL-FTCNTSDRYFYYNNPKNGQLYRYDTASQSE  179 (302)
T ss_dssp             EEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEESSCC-CCSEEETTEEEEECTTTCCEEEEETTTTEE
T ss_pred             ccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeCCCc-eEeeEECCEEEEEeCCCceEEEEECCCCCE
Confidence            347788898888776    23456666677766666655533 23345    333433456788888765543

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=90.18  E-value=10  Score=34.26  Aligned_cols=17  Identities=18%  Similarity=0.282  Sum_probs=12.1

Q ss_pred             eeeeEEcCCCCeEEEec
Q 046394          225 IGKVSFRPYEDVLGIGH  241 (378)
Q Consensus       225 v~~~~~sp~g~~l~~~~  241 (378)
                      ...++|+|+|.+.++-.
T Consensus       230 p~gla~dp~G~L~~~d~  246 (454)
T 1cru_A          230 PQGLAFTPNGKLLQSEQ  246 (454)
T ss_dssp             EEEEEECTTSCEEEEEE
T ss_pred             cceEEECCCCCEEEEec
Confidence            56788999887666543

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=90.11  E-value=4.2  Score=42.33  Aligned_cols=111  Identities=9%  Similarity=-0.002  Sum_probs=63.8

Q ss_pred             eeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCC-CeEEeeccCCCeeEEEE----EEEEEeC
Q 046394           26 IAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDG-TELHCSKEHGEVLKLQF----LLASINK  100 (378)
Q Consensus        26 ~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~l~~----~l~s~~~  100 (378)
                      .+-+.|+..+..+..-.   -..-+.-.+|..+.||.-. ..++.|+|+.. ..+..+.-...+.--.|    .++-. .
T Consensus        49 ~vvIidl~~~~~~~rrp---i~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~e~VvfWkWis~~~l~lV-T  123 (1630)
T 1xi4_A           49 QVVIIDMNDPSNPIRRP---ISADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALV-T  123 (1630)
T ss_pred             eEEEEECCCCCCccccc---ccchhhccCCCcceEEEec-CCeEEEeehHHhhhhcccccCCCceEEEecCCCeeEEE-c
Confidence            55666666554431111   1122455788888777664 66899999643 33444443444444444    33322 3


Q ss_pred             CCeEEEEEcCC-CcEEEEEecC----CCCeeEEEEcCCCCEEEEEc
Q 046394          101 LGQLRYQNVTM-GEIVGNFWTG----LGRTDVIRVNPFNGVVSLGH  141 (378)
Q Consensus       101 d~~i~iwd~~~-~~~~~~~~~~----~~~v~~~~~s~~~~~l~~~~  141 (378)
                      +..|+-|++.. ..++..|..|    ...|.....+++.++++..+
T Consensus       124 ~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~g  169 (1630)
T 1xi4_A          124 DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTG  169 (1630)
T ss_pred             CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEe
Confidence            46799999963 3454445444    35677778888888776543

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=89.04  E-value=9.1  Score=32.39  Aligned_cols=86  Identities=13%  Similarity=0.011  Sum_probs=42.6

Q ss_pred             eeeeecccceeeEE--eecCCCCceEEEEcCCCCEEEEEeCC-------CcEEEEeCCCCeEEeeccCCC--e-eEE-EE
Q 046394           27 AREVDILSSRNQYD--IMLPELGPYTLDFTSSGRYMAAAGCK-------GYPYFYNRDGTELHCSKEHGE--V-LKL-QF   93 (378)
Q Consensus        27 i~~~d~~~~~~~~~--l~~~~~~v~~~~~sp~g~~l~~~~~d-------g~i~iwd~~~~~~~~~~~~~~--~-~~l-~~   93 (378)
                      +.++|..+.+-...  +...... .+++.. ++..++.|+.+       ..+.+||.....-..+.....  . .++ .+
T Consensus        80 ~~~~d~~~~~W~~~~~~p~~r~~-~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~  157 (318)
T 2woz_A           80 FFQLDNVSSEWVGLPPLPSARCL-FGLGEV-DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISH  157 (318)
T ss_dssp             EEEEETTTTEEEECSCBSSCBCS-CEEEEE-TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEE
T ss_pred             EEEEeCCCCcEEECCCCCccccc-cceEEE-CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEE
Confidence            56677766653221  1111111 122222 56666777653       257888865554443322221  1 222 23


Q ss_pred             ---EEEEEeC------CCeEEEEEcCCCcE
Q 046394           94 ---LLASINK------LGQLRYQNVTMGEI  114 (378)
Q Consensus        94 ---~l~s~~~------d~~i~iwd~~~~~~  114 (378)
                         +++.|+.      -..+.+||+.+.+-
T Consensus       158 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W  187 (318)
T 2woz_A          158 NGMIYCLGGKTDDKKCTNRVFIYNPKKGDW  187 (318)
T ss_dssp             TTEEEEECCEESSSCBCCCEEEEETTTTEE
T ss_pred             CCEEEEEcCCCCCCCccceEEEEcCCCCEE
Confidence               5555553      23588999887654

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=88.46  E-value=12  Score=32.54  Aligned_cols=58  Identities=10%  Similarity=-0.023  Sum_probs=32.1

Q ss_pred             eEEEeccceeeeeecccce-eeEEee---cCCCCceEEEEcCC---CCEEEEEeC----C----CcEEEEeCCC
Q 046394           18 TWRIKQEAIAREVDILSSR-NQYDIM---LPELGPYTLDFTSS---GRYMAAAGC----K----GYPYFYNRDG   76 (378)
Q Consensus        18 ~~~~~~~~~i~~~d~~~~~-~~~~l~---~~~~~v~~~~~sp~---g~~l~~~~~----d----g~i~iwd~~~   76 (378)
                      .|.....+.|.++|. ++. .+..+.   .....+..|+|+|+   +..|+++..    +    +.|..|+.++
T Consensus        42 l~V~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~  114 (354)
T 3a9g_A           42 YLVTERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDG  114 (354)
T ss_dssp             EEEEETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECS
T ss_pred             EEEEeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECC
Confidence            444444567777763 343 222221   12356889999997   445554433    2    5677777544

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=87.93  E-value=13  Score=32.37  Aligned_cols=71  Identities=8%  Similarity=0.103  Sum_probs=37.4

Q ss_pred             ccceeeeeecccc--e-eeEEeec-----CCCCceEEEEcC--CCC-EEEEEe-C--CCcEEEEe--CCCCeEE---eec
Q 046394           23 QEAIAREVDILSS--R-NQYDIML-----PELGPYTLDFTS--SGR-YMAAAG-C--KGYPYFYN--RDGTELH---CSK   83 (378)
Q Consensus        23 ~~~~i~~~d~~~~--~-~~~~l~~-----~~~~v~~~~~sp--~g~-~l~~~~-~--dg~i~iwd--~~~~~~~---~~~   83 (378)
                      .++.|.++|..+.  + ....+.+     ....+..|.+.+  +|. +|+++. .  +..|.+|+  ..+....   .+.
T Consensus        81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~  160 (355)
T 3sre_A           81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR  160 (355)
T ss_dssp             -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred             CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc
Confidence            5788889998732  1 1223333     224677888866  454 455443 2  45677777  4444332   333


Q ss_pred             cCC--CeeEEEE
Q 046394           84 EHG--EVLKLQF   93 (378)
Q Consensus        84 ~~~--~~~~l~~   93 (378)
                      +..  .++++.+
T Consensus       161 g~~~~~pND~~v  172 (355)
T 3sre_A          161 HKLLPSVNDIVA  172 (355)
T ss_dssp             CTTCSSEEEEEE
T ss_pred             cCCCCCCceEEE
Confidence            322  2366666

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=87.59  E-value=18  Score=33.65  Aligned_cols=86  Identities=10%  Similarity=0.035  Sum_probs=56.9

Q ss_pred             EEEEeCCCcEEEEe-CCCCeEEeeccC--------------------------CCe--eEEEE---------EEEEEeCC
Q 046394           60 MAAAGCKGYPYFYN-RDGTELHCSKEH--------------------------GEV--LKLQF---------LLASINKL  101 (378)
Q Consensus        60 l~~~~~dg~i~iwd-~~~~~~~~~~~~--------------------------~~~--~~l~~---------~l~s~~~d  101 (378)
                      +.+|+..|.|+|+- .+++.+..+.-.                          .+.  ..+++         +++-.-.+
T Consensus        73 f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdkan  152 (638)
T 3sbq_A           73 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKAN  152 (638)
T ss_dssp             EEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETTT
T ss_pred             EeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCCC
Confidence            66888899999999 666666554211                          011  22333         55555567


Q ss_pred             CeEEEEEcCCCcEEEEEec-CCCCeeEEEEc--CCCCEEEEEcCCCe
Q 046394          102 GQLRYQNVTMGEIVGNFWT-GLGRTDVIRVN--PFNGVVSLGHSGGT  145 (378)
Q Consensus       102 ~~i~iwd~~~~~~~~~~~~-~~~~v~~~~~s--~~~~~l~~~~~d~~  145 (378)
                      ..|-..++...++-..+.. ....+..++|-  |...++++++....
T Consensus       153 ~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~  199 (638)
T 3sbq_A          153 SRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFII  199 (638)
T ss_dssp             TEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCE
T ss_pred             cceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeec
Confidence            7888888888877665543 34667788886  67788888776554

>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*

Probab=87.54  E-value=18  Score=33.54  Aligned_cols=163  Identities=14%  Similarity=0.139  Sum_probs=96.9

Q ss_pred             ceeeeeecccceeeEEeec--------CCCCceEEEEcCCCC-EEEEEeCCCc---------------------------
Q 046394           25 AIAREVDILSSRNQYDIML--------PELGPYTLDFTSSGR-YMAAAGCKGY---------------------------   68 (378)
Q Consensus        25 ~~i~~~d~~~~~~~~~l~~--------~~~~v~~~~~sp~g~-~l~~~~~dg~---------------------------   68 (378)
                      ..|.+|++. ++.++.+..        |-..+....|.-||+ -|++...+|+                           
T Consensus       151 ~~l~aY~ld-G~~LW~idlg~ni~aGa~yt~~~V~DlDGDGkaEIvv~TadGt~dg~g~~ig~~~~dyrn~~g~il~GpE  229 (591)
T 2zux_A          151 VLIDAYKLD-GTKLWRINLGKNIRAGAHYTQFMVYDLDGDGKAEVAMKTADGTKDGTGKVIGNANADYRNEQGRVLSGPE  229 (591)
T ss_dssp             CEEEEECTT-SCEEEEEECCTTSCCSTTSCCCEEECSSSSSSCEEEEEECTTCBCTTSCBCSSTTCCCBCTTSCBCSSCC
T ss_pred             cEEEEEECC-CCEEEEEcCCCCcccccccCceeEEEcCCCCcceEEEEccCCcccCCceEecccccccccccceeecCCc
Confidence            467788885 666666653        233466777777885 5777766665                           


Q ss_pred             -EEEEe-CCCCeEEeeccCC--C----------------eeEEEE------EEEEEe---CCCeEEEEEcCCCcEE--EE
Q 046394           69 -PYFYN-RDGTELHCSKEHG--E----------------VLKLQF------LLASIN---KLGQLRYQNVTMGEIV--GN  117 (378)
Q Consensus        69 -i~iwd-~~~~~~~~~~~~~--~----------------~~~l~~------~l~s~~---~d~~i~iwd~~~~~~~--~~  117 (378)
                       |.|+| .+|..+.++.-..  +                ..++++      .++.+-   .-..|..||...++..  ..
T Consensus       230 yL~vfdG~TG~~l~~~~~~p~rg~~~~WGD~ygnR~drf~~~vayLDG~~Ps~v~~rGyYtr~~v~A~d~~~~~L~~~W~  309 (591)
T 2zux_A          230 YLTVFQGSTGKELVTANFEPARGNVSDWGDSYGNRVDRFLAGIAYLDGQRPSLIMTRGYYAKTMLVAYNFRDGKLSKLWT  309 (591)
T ss_dssp             EEEEEETTTCCEEEEEECSSCCCCGGGGTCSSSSGGGCEEEEEECTTSSSCEEEEEECCSSSCEEEEEEEETTEEEEEEE
T ss_pred             EEEEEeCCCCCEEecccCCCCCCcccccccccccccccceeeEEECCCCCceEEEeccccceeEEEEEECCCCceEEEEE
Confidence             78999 6888877654321  1                022333      222222   1235888998877653  33


Q ss_pred             EecCC-----------CCeeEEEEcCCCC-EEEEEc----CCCe-----eeecCCCEEEEEEecC--CCEEEEEECCC--
Q 046394          118 FWTGL-----------GRTDVIRVNPFNG-VVSLGH----SGGT-----MLCHQGPVSALAFHPN--GHLMATSGKDC--  172 (378)
Q Consensus       118 ~~~~~-----------~~v~~~~~s~~~~-~l~~~~----~d~~-----~~~h~~~v~~~~~sp~--g~~l~t~~~d~--  172 (378)
                      +....           ..+....+.-||. .|+.|+    .||.     -.+|...+....|.|+  |..++.+..++  
T Consensus       310 ~d~~~~~~~~~~gqg~h~~~vaDVDgDG~dEIv~Gs~~iD~dG~~L~st~~gHGDa~hv~dldP~r~GlEv~~~~E~~~~  389 (591)
T 2zux_A          310 LDSSKSGNEAFAGQGNHNLSIADVDGDGKDEIIFGSMAVDHDGKGMYSTGLGHGDALHTGDLDPGRPGLEVFQVHEDKNA  389 (591)
T ss_dssp             EETTSTTCGGGSSCCCSCCEEECCSSSSSCEEEETTEEECTTSCEEEECSCCCCSCEEEECCCTTSSSCEEEEECCCTTS
T ss_pred             ecCCCCCcccccccCCCCCeeEeCCCCCCceEEEeeeEECCCCCEeeeCCCCCCCeeEEeecCCCCCCcEEEEEecCCCC
Confidence            43321           2333344555553 333332    3333     2378888888889996  55677776652  


Q ss_pred             --eEEEEEcCCceeeeee
Q 046394          173 --KIKIWDLRKYEVLQTL  188 (378)
Q Consensus       173 --~i~iwd~~~~~~~~~~  188 (378)
                        -..+.|.++|+.+...
T Consensus       390 ~~G~~~~dA~tG~vlw~~  407 (591)
T 2zux_A          390 KYGLSFRDAATGKILWGV  407 (591)
T ss_dssp             SCSEEEEETTTCCEEEEE
T ss_pred             CCccEEEECCCCcEEEEc
Confidence              3556899999998776

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=86.96  E-value=6.3  Score=34.08  Aligned_cols=114  Identities=13%  Similarity=0.070  Sum_probs=66.8

Q ss_pred             CEEEEEeCCCcEEEEe-CCCCeEEeeccC--CCeeEEE--------EEEEE-EeCCCeEEEEEcCCCcEEEEEecCCCCe
Q 046394           58 RYMAAAGCKGYPYFYN-RDGTELHCSKEH--GEVLKLQ--------FLLAS-INKLGQLRYQNVTMGEIVGNFWTGLGRT  125 (378)
Q Consensus        58 ~~l~~~~~dg~i~iwd-~~~~~~~~~~~~--~~~~~l~--------~~l~s-~~~d~~i~iwd~~~~~~~~~~~~~~~~v  125 (378)
                      ..+++++.||.|+-+| .+|+.+..+...  ..+....        ..++. .+.||.|..+|..+|.....+.... .+
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~-lv   89 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQ-LV   89 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHH-HH
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccc-ce
Confidence            4788889999999999 678888887665  1222211        12222 2578999999988875544333110 00


Q ss_pred             eEEEEcCCCCEEEEEcCCCeeeecCCCEE-EEEEecCCCEEEEEECCCeEEEEEcCCceeeeee
Q 046394          126 DVIRVNPFNGVVSLGHSGGTMLCHQGPVS-ALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL  188 (378)
Q Consensus       126 ~~~~~s~~~~~l~~~~~d~~~~~h~~~v~-~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~  188 (378)
                      .   .+|             +.....+|. ..--...+..+++++.+|.+...|+.+|+.+..+
T Consensus        90 ~---~SP-------------~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~  137 (339)
T 2be1_A           90 S---TSP-------------LHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAF  137 (339)
T ss_dssp             T---TCS-------------EEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEE
T ss_pred             e---ccc-------------cccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEE
Confidence            0   000             001111111 0000013457889999999999999999999888

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=84.33  E-value=24  Score=32.01  Aligned_cols=31  Identities=16%  Similarity=0.221  Sum_probs=24.9

Q ss_pred             CCceEEEEcCCCC-EEEEEeCCCcEEEEeCCC
Q 046394           46 LGPYTLDFTSSGR-YMAAAGCKGYPYFYNRDG   76 (378)
Q Consensus        46 ~~v~~~~~sp~g~-~l~~~~~dg~i~iwd~~~   76 (378)
                      ..+..|+|.|+|. .|+++...|.|++++.++
T Consensus        14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g   45 (463)
T 2wg3_C           14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEG   45 (463)
T ss_dssp             SSEEEEECCSSSSCCEEEEETTTEEEEECTTS
T ss_pred             CCceEEEECCCCCeEEEEEeCCceEEEEeCCC
Confidence            4678999999996 566667899999998554

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=84.28  E-value=18  Score=30.50  Aligned_cols=117  Identities=9%  Similarity=-0.094  Sum_probs=58.6

Q ss_pred             ceeeeeecccceeeEEeec--CCCCceEEEEcCCCCEEEEEeC----CC-------cEEEEeCCCCeEEeeccCCCe---
Q 046394           25 AIAREVDILSSRNQYDIML--PELGPYTLDFTSSGRYMAAAGC----KG-------YPYFYNRDGTELHCSKEHGEV---   88 (378)
Q Consensus        25 ~~i~~~d~~~~~~~~~l~~--~~~~v~~~~~sp~g~~l~~~~~----dg-------~i~iwd~~~~~~~~~~~~~~~---   88 (378)
                      ..+.+||..+.+-.. ...  +.......+...++..++.|+.    ++       .+.+||.....-..+......   
T Consensus        13 ~~~~~yd~~~~~W~~-~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~   91 (315)
T 4asc_A           13 EGAVAYDPAANECYC-ASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCL   91 (315)
T ss_dssp             TEEEEEETTTTEEEE-EECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEES
T ss_pred             CceEEECCCCCeEec-CCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhc
Confidence            567888988877432 222  1122233334456777777773    11       277888655544443322211   


Q ss_pred             eEEE-E---EEEEEeCC--------CeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcC
Q 046394           89 LKLQ-F---LLASINKL--------GQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHS  142 (378)
Q Consensus        89 ~~l~-~---~l~s~~~d--------~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  142 (378)
                      .+++ +   +++.|+.+        ..+.+||+.+.+-...-..........+...++.+++.|+.
T Consensus        92 ~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~  157 (315)
T 4asc_A           92 FGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGK  157 (315)
T ss_dssp             CEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCB
T ss_pred             eeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCC
Confidence            2232 3   55555532        45889998876533221111111222222345566666665

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=81.98  E-value=25  Score=30.48  Aligned_cols=35  Identities=9%  Similarity=0.044  Sum_probs=26.1

Q ss_pred             eecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 046394           41 IMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRD   75 (378)
Q Consensus        41 l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~   75 (378)
                      +...-..+..|+|.|+|+++++--..|.|++++..
T Consensus        27 va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~   61 (347)
T 3das_A           27 VATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAK   61 (347)
T ss_dssp             EECCCSSEEEEEECTTSCEEEEETTTCEEEEECTT
T ss_pred             eecCCCCceEEEEcCCCcEEEEEecCCEEEEEECC
Confidence            33334578899999999866665448999999854

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=81.34  E-value=3.5  Score=42.35  Aligned_cols=38  Identities=18%  Similarity=0.369  Sum_probs=32.7

Q ss_pred             CCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee
Q 046394          151 GPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL  188 (378)
Q Consensus       151 ~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~  188 (378)
                      ..+.+++..++..+++|.+.|+++|||++.+++++.+.
T Consensus       238 ~~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~  275 (1139)
T 4fhn_B          238 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI  275 (1139)
T ss_dssp             TCBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEE
T ss_pred             ceeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEee
Confidence            34556677788899999999999999999999998876

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=80.36  E-value=33  Score=30.90  Aligned_cols=214  Identities=10%  Similarity=0.018  Sum_probs=118.4

Q ss_pred             ceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCC-CeEEeeccCCCeeEEEE----EEEEEe
Q 046394           25 AIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDG-TELHCSKEHGEVLKLQF----LLASIN   99 (378)
Q Consensus        25 ~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~l~~----~l~s~~   99 (378)
                      ..+-+.|+..+..+..-..   ..-+.-.+|..+.||.-. ..++.|+|+.. ..+..+.-...+.--.|    .|+-. 
T Consensus        48 ~~vvIiDl~~~~~~~rrpi---~AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e~VvfWkWis~~~l~lV-  122 (494)
T 1bpo_A           48 AQVVIIDMNDPSNPIRRPI---SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALV-  122 (494)
T ss_dssp             CEEEEEETTSTTSCEEEEC---CCSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEEEETTEEEEE-
T ss_pred             CeEEEEECCCCCcceeccc---ccceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCCCceEEEecCCCeEEEE-
Confidence            3566666666554422211   122566789888777765 66899999654 45555555555555555    33333 


Q ss_pred             CCCeEEEEEcCC-CcEEEEEecCC----CCeeEEEEcCCCCEEEEEc---CCCe-----------------eeecCCCEE
Q 046394          100 KLGQLRYQNVTM-GEIVGNFWTGL----GRTDVIRVNPFNGVVSLGH---SGGT-----------------MLCHQGPVS  154 (378)
Q Consensus       100 ~d~~i~iwd~~~-~~~~~~~~~~~----~~v~~~~~s~~~~~l~~~~---~d~~-----------------~~~h~~~v~  154 (378)
                      .+..|+-|++.. ..++..|..|.    ..|.....+++.++++..+   .++.                 +.+|.+...
T Consensus       123 T~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGhaa~F~  202 (494)
T 1bpo_A          123 TDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFA  202 (494)
T ss_dssp             CSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEEEECCSEEEEE
T ss_pred             cCCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccchheeeeeeeE
Confidence            356899999964 45777776653    4567778889999776543   2333                 445544333


Q ss_pred             EEEEecC---CCEEEEEECC---CeEEEEEcCCc---ee-e----eee-------cCCceEEEEecCC----------Cc
Q 046394          155 ALAFHPN---GHLMATSGKD---CKIKIWDLRKY---EV-L----QTL-------PGHAKTLDFSRKD----------SG  203 (378)
Q Consensus       155 ~~~~sp~---g~~l~t~~~d---~~i~iwd~~~~---~~-~----~~~-------~~~i~~~~~sp~g----------~~  203 (378)
                      .+.+..+   .+.|+.+...   +.+.|-++...   .. .    ..+       ..-..++..|+.-          ..
T Consensus       203 ~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i  282 (494)
T 1bpo_A          203 QFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYI  282 (494)
T ss_dssp             EEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEE
T ss_pred             EEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceE
Confidence            3322211   1244545443   68888888542   11 1    011       1223445555432          23


Q ss_pred             cccCCCCCceEEEeeccCCcceeeeEEcCCCCeEEEecCCC
Q 046394          204 DFSGSHNYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMG  244 (378)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g  244 (378)
                      .+++..++.+++..+- ...+|...+.+....-++.-...|
T Consensus       283 ~lyDleTgt~i~~nrI-s~~~iF~t~~~~~~~Gi~~Vnr~G  322 (494)
T 1bpo_A          283 HLYDLETGTCIYMNRI-SGETIFVTAPHEATAGIIGVNRKG  322 (494)
T ss_dssp             EEEETTTCCEEEEEEC-CSSCEEEEEEETTTTEEEEEETTC
T ss_pred             EEEecccceeeeeecc-cCCceEEecccCCCCcEEEEccCc
Confidence            5666666666666655 555565555544444444444555

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=80.04  E-value=29  Score=30.01  Aligned_cols=25  Identities=20%  Similarity=0.057  Sum_probs=18.0

Q ss_pred             cceeeeEEcCCCCeEEEec-CCCeEE
Q 046394          223 YQIGKVSFRPYEDVLGIGH-SMGVSG  247 (378)
Q Consensus       223 ~~v~~~~~sp~g~~l~~~~-~~g~~~  247 (378)
                      ..+.++++.|||.++++.. .+|.+.
T Consensus       323 ~rp~~v~~~pdG~lyv~td~~~g~I~  348 (353)
T 2g8s_A          323 QRIRDVRTGPDGYLYVLTDESSGELL  348 (353)
T ss_dssp             CCEEEEEECTTSCEEEEECSTTEEEE
T ss_pred             CceeEEEECCCCcEEEEEeCCCCEEE
Confidence            4688999999998777644 456443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	378
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-12
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	6e-12
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	9e-08
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-10
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	2e-04
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	4e-10
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-09
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-06
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-06
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	1e-09
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	1e-06
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	8e-06
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	1e-09
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	5e-05
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	0.003
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-09
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	3e-08
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	4e-08
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	6e-09
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	9e-06
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	3e-04
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	8e-09
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	3e-05
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	0.002
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	0.003
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-08
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-07
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-07
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	3e-08
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-07
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-04
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	5e-08
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	9e-06
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	3e-04
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	7e-08
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	7e-05
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	3e-07
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-06
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	1e-06
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	2e-05
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	0.001
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	3e-06
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	4e-06
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	2e-05
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	6e-05
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	5e-05
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	5e-04
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	0.002

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 64.8 bits (156), Expect = 2e-12
 Identities = 34/216 (15%), Positives = 73/216 (33%), Gaps = 18/216 (8%)

Query: 1   WLMPSEGGYLEAEGVEKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYM 60
             +   G ++ +   +KT ++ +      V   +   ++  M+             G  +
Sbjct: 107 VSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMV--------RPNQDGTLI 158

Query: 61  AAAGCKGYPYFYNRDGTELHCS-KEHGEVLK--LQFLLASINKLGQLRYQNVTMGEIVGN 117
           A+         +     E     +EH  V++       +S + + +            G 
Sbjct: 159 ASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGP 218

Query: 118 FWTGLGRTDVIRVNPFNGVVSLGHSGGTMLCHQGPVSALAFHPNGHLMATSGKDCKIKIW 177
           F     R   I++   +     G    T++ H   V  + FH  G  + +   D  +++W
Sbjct: 219 FLLSGSRDKTIKMWDVST----GMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVW 274

Query: 178 DLRKYEVLQTLPGHAKT---LDFSRKDSGDFSGSHN 210
           D +    ++TL  H      LDF +      +GS +
Sbjct: 275 DYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVD 310

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 63.6 bits (153), Expect = 6e-12
 Identities = 26/157 (16%), Positives = 54/157 (34%), Gaps = 1/157 (0%)

Query: 145 TMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHAKTLDFSRKDSGD 204
            +  H+ PV+ + FHP   +M ++ +D  IK+WD    +  +TL GH  ++     D   
Sbjct: 12  ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSG 71

Query: 205 FSGSHNYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILIPGSGEPNFD-SWVA 263
              +                    +   ++  +     M     ++  S +       V 
Sbjct: 72  KLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQ 131

Query: 264 NPFETSKQRREKEVHSLLDKLPPETIMLNPSKIGTVR 300
             +        +E   ++      T++ + S   TVR
Sbjct: 132 TGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVR 168

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.9 bits (120), Expect = 9e-08
 Identities = 22/149 (14%), Positives = 41/149 (27%), Gaps = 35/149 (23%)

Query: 37  NQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKEH-GEVLKLQF- 93
           + Y  +    G  T      G ++ +         ++   G  L     H   V  + F 
Sbjct: 197 SSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFH 256

Query: 94  ----LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGTMLCH 149
                + S      LR  +      +                             T+  H
Sbjct: 257 SGGKFILSCADDKTLRVWDYKNKRCMK----------------------------TLNAH 288

Query: 150 QGPVSALAFHPNGHLMATSGKDCKIKIWD 178
           +  V++L FH     + T   D  +K+W+
Sbjct: 289 EHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 59.6 bits (142), Expect = 1e-10
 Identities = 8/43 (18%), Positives = 18/43 (41%)

Query: 149 HQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGH 191
           H   ++AL+   +G  + ++  +  I  WD+      +  P  
Sbjct: 11  HNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDV 53

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 40.4 bits (92), Expect = 2e-04
 Identities = 7/35 (20%), Positives = 13/35 (37%)

Query: 145 TMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDL 179
               H           N   + ++G+D  IK W++
Sbjct: 263 IKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 297

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 58.2 bits (139), Expect = 4e-10
 Identities = 13/68 (19%), Positives = 25/68 (36%), Gaps = 3/68 (4%)

Query: 146 MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHAKT---LDFSRKDS 202
                  +++++F  +G L+     D    +WD  K +    L GH      L  +    
Sbjct: 266 HDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGM 325

Query: 203 GDFSGSHN 210
              +GS +
Sbjct: 326 AVATGSWD 333

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 55.9 bits (133), Expect = 2e-09
 Identities = 19/139 (13%), Positives = 36/139 (25%), Gaps = 37/139 (26%)

Query: 49  YTLDFTSSGRYMAAAG----CKGYPYFYNRDGTELHCSKEHGEVLKLQF-----LLASIN 99
             + F  +G   A       C+ +    +++            +  + F     LL +  
Sbjct: 230 NAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGY 289

Query: 100 KLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGTMLCHQGPVSALAFH 159
                   +    +  G                             +  H   VS L   
Sbjct: 290 DDFNCNVWDALKADRAG----------------------------VLAGHDNRVSCLGVT 321

Query: 160 PNGHLMATSGKDCKIKIWD 178
            +G  +AT   D  +KIW+
Sbjct: 322 DDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 47.8 bits (112), Expect = 1e-06
 Identities = 10/47 (21%), Positives = 22/47 (46%)

Query: 145 TMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGH 191
           T+  H   + A+ +  +  L+ ++ +D K+ IWD      +  +P  
Sbjct: 50  TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLR 96

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 46.3 bits (108), Expect = 3e-06
 Identities = 25/114 (21%), Positives = 38/114 (33%), Gaps = 14/114 (12%)

Query: 145 TMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHAK---TLDFSRKD 201
           T   H G V +L+  P+  L  +   D   K+WD+R+    QT  GH      + F    
Sbjct: 179 TFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNG 238

Query: 202 SGDFSGS-----------HNYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMG 244
           +   +GS            +              I  VSF     +L  G+   
Sbjct: 239 NAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDF 292

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 57.2 bits (136), Expect = 1e-09
 Identities = 10/69 (14%), Positives = 28/69 (40%), Gaps = 5/69 (7%)

Query: 149 HQGPVSALAFHPNGHLMATSGKDCKIKIWDLR--KYEVLQTLPGHAKT---LDFSRKDSG 203
              P+S  A++ +   +A    + ++ I++    K+  +  L  H      +D++   + 
Sbjct: 6   LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNR 65

Query: 204 DFSGSHNYN 212
             +   + N
Sbjct: 66  IVTCGTDRN 74

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 47.9 bits (112), Expect = 1e-06
 Identities = 11/72 (15%), Positives = 20/72 (27%)

Query: 149 HQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHAKTLDFSRKDSGDFSGS 208
           H G V+ + + P+ + + T G D    +W L+      TL                    
Sbjct: 50  HNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKK 109

Query: 209 HNYNRYMGYSMV 220
                      +
Sbjct: 110 FAVGSGSRVISI 121

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 45.2 bits (105), Expect = 8e-06
 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 5/45 (11%)

Query: 149 HQGPVSALAFHPNG----HLMATSGKDCKIKIWDLRKYE-VLQTL 188
           H+  VS ++    G        T+G D  + IWD+R  E  L+ L
Sbjct: 324 HKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESALKDL 368

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.8 bits (135), Expect = 1e-09
 Identities = 15/85 (17%), Positives = 28/85 (32%), Gaps = 1/85 (1%)

Query: 141 HSGGTMLCHQGPVSA-LAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHAKTLDFSR 199
           HS   + C             +   + +  +D  IKIWD    E  + L GH  ++   +
Sbjct: 3   HSLQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQ 62

Query: 200 KDSGDFSGSHNYNRYMGYSMVKGYQ 224
            D        + +    + +  G  
Sbjct: 63  YDERVIITGSSDSTVRVWDVNTGEM 87

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (98), Expect = 5e-05
 Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 2/34 (5%)

Query: 145 TMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWD 178
           T++ H G V  L F      + +S  D  I IWD
Sbjct: 262 TLVEHSGRVFRLQFD--EFQIVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (83), Expect = 0.003
 Identities = 16/91 (17%), Positives = 31/91 (34%), Gaps = 1/91 (1%)

Query: 158 FHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHAKTLDFSRKDSGDFSGSHNYNRYMGY 217
                 L+ +   D  I++WD+     L+ L GH + +   R D+          +   +
Sbjct: 184 LQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVW 243

Query: 218 SMVKGYQIGKVSFRPYEDVLGIGHSMGVSGI 248
            +V        +       L + HS  V  +
Sbjct: 244 DLVAALDPRAPAGTLCLRTL-VEHSGRVFRL 273

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.0 bits (133), Expect = 2e-09
 Identities = 25/174 (14%), Positives = 52/174 (29%), Gaps = 31/174 (17%)

Query: 53  FTSSGRYMAAAGCKGYPYFYNRDGTELHCSKEH---------GEVLKLQF-----LLASI 98
               G+Y+AA         ++ +   L    +            V  + F      + S 
Sbjct: 213 SPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSG 272

Query: 99  NKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGTMLCHQGPVSALAF 158
           +    ++  N+       +  T    T  +                T + H+  V ++A 
Sbjct: 273 SLDRSVKLWNLQNANNKSDSKTPNSGTCEV----------------TYIGHKDFVLSVAT 316

Query: 159 HPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHAKT-LDFSRKDSGDFSGSHNY 211
             N   + +  KD  +  WD +    L  L GH  + +  +  +       +N 
Sbjct: 317 TQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNV 370

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.9 bits (125), Expect = 3e-08
 Identities = 11/66 (16%), Positives = 24/66 (36%), Gaps = 1/66 (1%)

Query: 145 TMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHAKTLDFSRKDSGD 204
             L H   V  + F  +G  +AT G +   +++ +    ++  L   +         +  
Sbjct: 57  KSLDHTSVVCCVKFSNDGEYLAT-GCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTS 115

Query: 205 FSGSHN 210
            S S +
Sbjct: 116 SSPSSD 121

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.1 bits (123), Expect = 4e-08
 Identities = 31/206 (15%), Positives = 63/206 (30%), Gaps = 54/206 (26%)

Query: 1   WLMPSEGGYLEAEGVEKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYM 60
            + P +G Y+ A  +++  R+        V+ L S N+      +   Y++ FT  G+ +
Sbjct: 211 AVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKD-SVYSVVFTRDGQSV 269

Query: 61  AAAGCKGYPYFYNRDGTE--------------LHCSKEHGEVLKLQF-----LLASINKL 101
            +         +N                   +        VL +        + S +K 
Sbjct: 270 VSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKD 329

Query: 102 GQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGTMLCHQGPVSALA---- 157
             + + +   G  +                              +  H+  V ++A    
Sbjct: 330 RGVLFWDKKSGNPLL----------------------------MLQGHRNSVISVAVANG 361

Query: 158 --FHPNGHLMATSGKDCKIKIWDLRK 181
               P  ++ AT   DCK +IW  +K
Sbjct: 362 SSLGPEYNVFATGSGDCKARIWKYKK 387

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.5 bits (129), Expect = 6e-09
 Identities = 15/78 (19%), Positives = 26/78 (33%), Gaps = 5/78 (6%)

Query: 145 TMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHAKT---LDFSRKD 201
           T+  H   V         + + T   D  I+++D    + L  L GH      L ++   
Sbjct: 7   TLRGHMTSVIT-CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYA-HG 64

Query: 202 SGDFSGSHNYNRYMGYSM 219
               SGS +    +    
Sbjct: 65  GILVSGSTDRTVRVWDIK 82

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.9 bits (104), Expect = 9e-06
 Identities = 10/59 (16%), Positives = 26/59 (44%), Gaps = 5/59 (8%)

Query: 146 MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQ-TLPGHAKT---LDFSRK 200
              H    +   F+ + +++  SG + +  I++LR  +++   +   A     ++F  K
Sbjct: 278 SYHHTNLSAITTFYVSDNILV-SGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK 335

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.3 bits (92), Expect = 3e-04
 Identities = 7/35 (20%), Positives = 14/35 (40%), Gaps = 1/35 (2%)

Query: 145 TMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDL 179
            +L     + ++ F     L+A   KD +  +  L
Sbjct: 319 NILKDADQIWSVNFKGKT-LVAAVEKDGQSFLEIL 352

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.4 bits (129), Expect = 8e-09
 Identities = 15/89 (16%), Positives = 32/89 (35%), Gaps = 2/89 (2%)

Query: 149 HQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHAKTLDFSRKDSGDFSGS 208
           H   V        G+ + +   D  +K+W     + L+TL GH   + +S +   +   S
Sbjct: 15  HDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGV-WSSQMRDNIIIS 72

Query: 209 HNYNRYMGYSMVKGYQIGKVSFRPYEDVL 237
            + +R +     +  +     +     V 
Sbjct: 73  GSTDRTLKVWNAETGECIHTLYGHTSTVR 101

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (99), Expect = 3e-05
 Identities = 14/153 (9%), Positives = 38/153 (24%), Gaps = 29/153 (18%)

Query: 56  SGRYMAAAGCKGYPYFYNRDGTELHCSKEHGEVLKLQF-----LLASINKLGQLRYQNVT 110
            G ++ +         ++ +      +    + L         +L S N    ++  ++ 
Sbjct: 186 DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIK 245

Query: 111 MGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGTMLC--------------------HQ 150
            G+ +            +    FN    +  S    +                       
Sbjct: 246 TGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSG 305

Query: 151 GPVSALAFHPNGHLMATSGKD----CKIKIWDL 179
           G V  +       + A   ++     K+ + D 
Sbjct: 306 GVVWRIRASNTKLVCAVGSRNGTEETKLLVLDF 338

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (85), Expect = 0.002
 Identities = 35/215 (16%), Positives = 58/215 (26%), Gaps = 23/215 (10%)

Query: 53  FTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKEH-GEVLKLQFLLASINKLGQLRYQNVT 110
               G  + +         ++   G  L     H G V   Q     I      R   V 
Sbjct: 23  LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVW 82

Query: 111 MGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGTMLC-------------HQGPVSALA 157
             E      T  G T  +R    +    +  S    L                   +   
Sbjct: 83  NAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRC 142

Query: 158 FHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHAKTLDFSRKDSGDF-SGS-------H 209
              +G  + +   D  +K+WD      L TL GH   +   + D     SGS        
Sbjct: 143 VQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVW 202

Query: 210 NYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMG 244
           +         + G+Q         +++L  G++  
Sbjct: 203 DVETGNCIHTLTGHQSLTSGMELKDNILVSGNADS 237

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (83), Expect = 0.003
 Identities = 16/66 (24%), Positives = 25/66 (37%), Gaps = 2/66 (3%)

Query: 146 MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHAKTLDFSRKDSGDF 205
              HQ  V+ L F+ N   + TS  D  +K+WDL+  E ++ L                 
Sbjct: 256 PNKHQSAVTCLQFNKN--FVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRA 313

Query: 206 SGSHNY 211
           S +   
Sbjct: 314 SNTKLV 319

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.9 bits (125), Expect = 2e-08
 Identities = 14/67 (20%), Positives = 25/67 (37%), Gaps = 2/67 (2%)

Query: 146 MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHAK--TLDFSRKDSG 203
           +  H+  V +L F   G    ++GKD  +  W       +      +   + D S  D  
Sbjct: 261 LHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKY 320

Query: 204 DFSGSHN 210
             +GS +
Sbjct: 321 IVTGSGD 327

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.8 bits (117), Expect = 2e-07
 Identities = 4/33 (12%), Positives = 11/33 (33%)

Query: 147 LCHQGPVSALAFHPNGHLMATSGKDCKIKIWDL 179
                 V +     +   + T   D K  ++++
Sbjct: 303 SKESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.8 bits (117), Expect = 2e-07
 Identities = 12/81 (14%), Positives = 20/81 (24%), Gaps = 9/81 (11%)

Query: 147 LCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL-----PGHAK---TLDFS 198
           L H   V A+        + T GK C +K+WD+        +             +    
Sbjct: 48  LNHGEVVCAVTISNPTRHVYTGGKGC-VKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLL 106

Query: 199 RKDSGDFSGSHNYNRYMGYSM 219
                   G       +    
Sbjct: 107 PDGCTLIVGGEASTLSIWDLA 127

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.5 bits (124), Expect = 3e-08
 Identities = 6/74 (8%), Positives = 18/74 (24%), Gaps = 6/74 (8%)

Query: 148 CHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYE---VLQTLPGHAK---TLDFSRKD 201
             +  +S +   P+  L+  +  D  + ++          L     +       +F    
Sbjct: 9   APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNT 68

Query: 202 SGDFSGSHNYNRYM 215
                        +
Sbjct: 69  DLQIYVGTVQGEIL 82

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.8 bits (117), Expect = 2e-07
 Identities = 14/96 (14%), Positives = 31/96 (32%), Gaps = 6/96 (6%)

Query: 115 VGNFWTGLGRTDVIRVNPFNGVVSLGHSGGTMLCHQGPVSALAFHPNGHLMATSGKDCKI 174
           V  F       +  +   F                  PV+++ F P    + T+G D  I
Sbjct: 220 VEFFDDQGDDYNSSKRFAFRCHRLNLKDTN----LAYPVNSIEFSPRHKFLYTAGSDGII 275

Query: 175 KIWDLRKYEVLQTLPGHAK--TLDFSRKDSGDFSGS 208
             W+L+  + ++      +   +  +  D+     +
Sbjct: 276 SCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLAT 311

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.0 bits (94), Expect = 2e-04
 Identities = 15/141 (10%), Positives = 36/141 (25%), Gaps = 18/141 (12%)

Query: 65  CKGYPYFYNRDGTELHCSKEHGEVLKLQFLLASINKLGQLRYQNVTMGEIVGNFWTGLGR 124
                    ++     CS   G V  ++F     +     +        +          
Sbjct: 195 QIRDVALLPKEQEGYACSSIDGRV-AVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYP 253

Query: 125 TDVIRVNPFNGVVSLGHSGGTM-------------LCHQGPVSALAFHPNGHLMATSGKD 171
            + I  +P +  +    S G +                    S +    + +++  +  D
Sbjct: 254 VNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSD 313

Query: 172 CKIKIWDLRKYEVLQTLPGHA 192
              K        + QT+  +A
Sbjct: 314 DTFKTNA----AIDQTIELNA 330

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 51.4 bits (121), Expect = 5e-08
 Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 4/67 (5%)

Query: 148 CHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHAKT----LDFSRKDSG 203
            H G V  L + P+G  +A++  D  IKIW++   +V +T+P   +     L        
Sbjct: 236 AHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQA 295

Query: 204 DFSGSHN 210
             S S N
Sbjct: 296 LVSISAN 302

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 44.9 bits (104), Expect = 9e-06
 Identities = 8/64 (12%), Positives = 15/64 (23%), Gaps = 4/64 (6%)

Query: 150 QGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHAKT---LDFSRKDSGDFS 206
           +G    L   P G  +        +    +      +    H+        S       S
Sbjct: 17  RGTAVVLGNTPAGDKIQ-YCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCAS 75

Query: 207 GSHN 210
           G  +
Sbjct: 76  GDVH 79

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 39.9 bits (91), Expect = 3e-04
 Identities = 6/29 (20%), Positives = 12/29 (41%)

Query: 149 HQGPVSALAFHPNGHLMATSGKDCKIKIW 177
           H    +     P+G+  A+      ++IW
Sbjct: 57  HSHQTTVAKTSPSGYYCASGDVHGNVRIW 85

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 51.3 bits (121), Expect = 7e-08
 Identities = 14/155 (9%), Positives = 37/155 (23%), Gaps = 13/155 (8%)

Query: 50  TLDFTSSGRYMAAAGCKGYPYFYNRDGTELHCSKEHGEVLKLQFLLASINKLGQLRYQNV 109
            L   +  R   +A    Y + +     E             +   A+ + L      ++
Sbjct: 178 ALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDL 237

Query: 110 TMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGTM-------------LCHQGPVSAL 156
             G+     +  L       +        +      +                      +
Sbjct: 238 KTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANLDHTYYCV 297

Query: 157 AFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGH 191
           AF   G  +   G    + +++    E ++ +   
Sbjct: 298 AFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP 332

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 42.0 bits (97), Expect = 7e-05
 Identities = 4/36 (11%), Positives = 10/36 (27%)

Query: 156 LAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGH 191
            A       M  +     + + D+    V ++    
Sbjct: 2   PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMP 37

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.9 bits (117), Expect = 3e-07
 Identities = 14/47 (29%), Positives = 26/47 (55%)

Query: 145 TMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGH 191
               H   V +L+F+ +G  + ++G D K++ WD++  E + TL  H
Sbjct: 284 GEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMH 330

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 47.9 bits (112), Expect = 1e-06
 Identities = 7/50 (14%), Positives = 16/50 (32%), Gaps = 2/50 (4%)

Query: 147 LCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL--PGHAKT 194
           +       ++    +G  +   G    +  +D    E    +  PG+A  
Sbjct: 276 VPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLPGNASM 325

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.3 bits (110), Expect = 1e-06
 Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 1/34 (2%)

Query: 145 TMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWD 178
            +  H+  V+ L +     L  +SG D  IK W+
Sbjct: 253 ALNAHKDGVNNLLWETPSTL-VSSGADACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.8 bits (101), Expect = 2e-05
 Identities = 13/78 (16%), Positives = 26/78 (33%), Gaps = 12/78 (15%)

Query: 145 TMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHA---KTLDFSRKD 201
           T+  H   ++AL  +P    + +   D +I  W             H+    +LD S+  
Sbjct: 8   TISGHNKGITALTVNP----LISGSYDGRIMEWSSSS-----MHQDHSNLIVSLDNSKAQ 58

Query: 202 SGDFSGSHNYNRYMGYSM 219
                   +  +  G + 
Sbjct: 59  EYSSISWDDTLKVNGITK 76

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.0 bits (86), Expect = 0.001
 Identities = 12/68 (17%), Positives = 23/68 (33%), Gaps = 5/68 (7%)

Query: 146 MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRK-YEVLQTLPGHAK---TLDFSRKD 201
           +        A        L+AT   D  I I+ +++  ++++ L  H      L +    
Sbjct: 211 ISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWE-TP 269

Query: 202 SGDFSGSH 209
           S   S   
Sbjct: 270 STLVSSGA 277

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 46.3 bits (108), Expect = 3e-06
 Identities = 8/48 (16%), Positives = 16/48 (33%), Gaps = 2/48 (4%)

Query: 149 HQGPVSALAFHPNG--HLMATSGKDCKIKIWDLRKYEVLQTLPGHAKT 194
               + ++    +    L A S  D  + I D    E L+++      
Sbjct: 298 MGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHG 345

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 46.0 bits (107), Expect = 4e-06
 Identities = 9/54 (16%), Positives = 19/54 (35%)

Query: 142 SGGTMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHAKTL 195
               +   +  ++ L    +   +     D KI  + L K E  +T+    + L
Sbjct: 306 KTRKVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTVETDKRPL 359

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.8 bits (101), Expect = 2e-05
 Identities = 14/73 (19%), Positives = 26/73 (35%), Gaps = 9/73 (12%)

Query: 149 HQGPVSALAFHPNGHLMAT-SGKDCKIKIWDL--RKYEVLQTLPGHAK----TLDFSRKD 201
            +   + L++ P  + +A   GK   ++  D    K   +    GH      T+ FS   
Sbjct: 16  QRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIK 75

Query: 202 SGDF--SGSHNYN 212
              +  SG  +  
Sbjct: 76  GSQYLCSGDESGK 88

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.2 bits (97), Expect = 6e-05
 Identities = 9/51 (17%), Positives = 16/51 (31%)

Query: 146 MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTLPGHAKTLD 196
                          +    AT G D  I++WD+   + +Q      + L 
Sbjct: 247 DQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLG 297

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 42.2 bits (97), Expect = 5e-05
 Identities = 6/47 (12%), Positives = 15/47 (31%), Gaps = 2/47 (4%)

Query: 144 GTMLCHQGPVSALAFHPNG-HLMATSGKDCKIKIWDLRKYEVLQTLP 189
             +     P + +A  P+G  +         + + D     +  T+ 
Sbjct: 238 ARIPVGPDP-AGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMA 283

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 39.2 bits (90), Expect = 5e-04
 Identities = 6/45 (13%), Positives = 15/45 (33%), Gaps = 2/45 (4%)

Query: 147 LCHQGPVSALAFHPNGH--LMATSGKDCKIKIWDLRKYEVLQTLP 189
           + +     A+    +G     A S     + I+D    +   ++ 
Sbjct: 310 ISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVE 354

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 37.5 bits (85), Expect = 0.002
 Identities = 11/78 (14%), Positives = 24/78 (30%), Gaps = 7/78 (8%)

Query: 149 HQGPVSALAFHPNG-HLMATSGKDCKIKIWDLRKYEVLQTL------PGHAKTLDFSRKD 201
             G V  +   P+  +L      + ++  + +   +   T       PG    +    + 
Sbjct: 35  VPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQG 94

Query: 202 SGDFSGSHNYNRYMGYSM 219
              F GS+N        +
Sbjct: 95  QFVFVGSYNAGNVSVTRL 112

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	378
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.98
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.97
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.97
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.97
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.97
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.97
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.97
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.97
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.96
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.96
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.94
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.94
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.93
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.93
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.93
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.93
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.92
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.91
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.91
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.91
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.91
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.9
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.9
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.89
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.89
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.88
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.86
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.84
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.82
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.79
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.77
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.75
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.74
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.72
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.71
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.71
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.7
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.67
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.61
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.58
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.44
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.44
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.38
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.37
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.34
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.33
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.22
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.03
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.0
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.96
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.93
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.92
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.78
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	98.74
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.68
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.68
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.64
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.62
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.61
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.53
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.51
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.39
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.37
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.28
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.16
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	97.94
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.93
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.81
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	97.5
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.48
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	96.96
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	96.43
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	96.37
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	96.3
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.18
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.17
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.16
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	95.95
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	95.24
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	95.18
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	95.08
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	94.96
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	94.77
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	94.43
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	93.55
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	93.39
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	92.93
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	92.86
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	92.02
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	91.04
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	90.22
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	90.2
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	89.6
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	89.41
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	87.73
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	86.24
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	85.33
d1dlpa1	115	Fetuin-binding protein Scafet precursor {Bluebell	82.34

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=3.3e-31  Score=231.65  Aligned_cols=241  Identities=12%  Similarity=0.074  Sum_probs=194.7

Q ss_pred             eecCCceeeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCC-C--eEEeeccCC
Q 046394           10 LEAEGVEKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDG-T--ELHCSKEHG   86 (378)
Q Consensus        10 l~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~-~--~~~~~~~~~   86 (378)
                      +..+.....+.+..++.+.+||+.++.....+.+|...|++++|+|+|++||+|+.||.|+|||... .  ....+..|.
T Consensus        23 ~a~~~~g~~l~~~~~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~  102 (311)
T d1nr0a1          23 LGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFS  102 (311)
T ss_dssp             CEECTTSSEEEEEETTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSS
T ss_pred             EEEcCCCCEEEEEeCCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeecccccccccccccc
Confidence            4444455556666778899999999999999999999999999999999999999999999999533 2  335678888


Q ss_pred             Ce-eEEEE-----EEEEEeC--CCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCE-EEEEcCCCe------------
Q 046394           87 EV-LKLQF-----LLASINK--LGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGV-VSLGHSGGT------------  145 (378)
Q Consensus        87 ~~-~~l~~-----~l~s~~~--d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~~d~~------------  145 (378)
                      +. .+++|     ++++++.  +..+++|++.+++....+..|...|.+++|+|++.+ |++|+.|+.            
T Consensus       103 ~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~  182 (311)
T d1nr0a1         103 GPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFK  182 (311)
T ss_dssp             SCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEE
T ss_pred             Cccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeecccccccccccccccccccc
Confidence            65 99999     7777765  456999999999998899999999999999999984 788888887            


Q ss_pred             --eeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee----------cCCceEEEEecCCCc----------
Q 046394          146 --MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL----------PGHAKTLDFSRKDSG----------  203 (378)
Q Consensus       146 --~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~----------~~~i~~~~~sp~g~~----------  203 (378)
                        +..|..+|+++.|+|++++|++++.|+.|++||+.++..+..+          ...|++++|+|+|.+          
T Consensus       183 ~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v  262 (311)
T d1nr0a1         183 STFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTI  262 (311)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             cccccccccccccccCccccccccccccccccccccccccccccccccccccccccccccccccCCCCCEEEEEeCCCeE
Confidence              5678999999999999999999999999999999998877666          146899999998875          


Q ss_pred             cccCCCCCceEEEeeccCCcceeeeEEcCCCCeEEEecCCCeEEEEE
Q 046394          204 DFSGSHNYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILI  250 (378)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~  250 (378)
                      .+|+..+..++..+..++......+.+.+++..|++++.||.+.+|.
T Consensus       263 ~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~~~~l~s~s~dG~i~~wd  309 (311)
T d1nr0a1         263 KIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVN  309 (311)
T ss_dssp             EEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEE
T ss_pred             EEEECCCCcEEEEEECCCCccceEEEEEecCCEEEEEECCCEEEEEe
Confidence            67777777777777652222333445555566677777777665554

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-30  Score=229.22  Aligned_cols=229  Identities=10%  Similarity=0.053  Sum_probs=192.2

Q ss_pred             EEEeccceeeeeeccccee-----eEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCC---CeEEeeccCCCe-e
Q 046394           19 WRIKQEAIAREVDILSSRN-----QYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDG---TELHCSKEHGEV-L   89 (378)
Q Consensus        19 ~~~~~~~~i~~~d~~~~~~-----~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~---~~~~~~~~~~~~-~   89 (378)
                      +....++.|++||+.+...     ......|...|.+++|+|+|++|++|+.||.|++||...   .....+..|... .
T Consensus        66 latg~dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~  145 (337)
T d1gxra_          66 VYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACY  145 (337)
T ss_dssp             EEEECBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEE
T ss_pred             EEEEECCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeeccccccccccccccccccccccccccccc
Confidence            3334578999999976533     223457888999999999999999999999999999532   345567777765 7


Q ss_pred             EEEE-----EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe-------------eeecCC
Q 046394           90 KLQF-----LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT-------------MLCHQG  151 (378)
Q Consensus        90 ~l~~-----~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~-------------~~~h~~  151 (378)
                      .+.|     ++++++.|+.|.+||+.++++......|...+.+++|++++..+++++.++.             ...|..
T Consensus       146 ~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~~~  225 (337)
T d1gxra_         146 ALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTS  225 (337)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSS
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeccccccc
Confidence            8888     8999999999999999999999999889999999999999999999999887             456789


Q ss_pred             CEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee--cCCceEEEEecCCCc----------cccCCCCCceEEEeec
Q 046394          152 PVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL--PGHAKTLDFSRKDSG----------DFSGSHNYNRYMGYSM  219 (378)
Q Consensus       152 ~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~--~~~i~~~~~sp~g~~----------~~~~~~~~~~~~~~~~  219 (378)
                      .|.+++|+|++++|++++.|+.|++||++++......  ...|++++|+|+|.+          .+|+......+.... 
T Consensus       226 ~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~-  304 (337)
T d1gxra_         226 QIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-  304 (337)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-
T ss_pred             ceEEEEEcccccccceeccccccccccccccccccccccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEcc-
Confidence            9999999999999999999999999999998876665  478999999999874          577777777766554 


Q ss_pred             cCCcceeeeEEcCCCCeEEEecCCCeEEEE
Q 046394          220 VKGYQIGKVSFRPYEDVLGIGHSMGVSGIL  249 (378)
Q Consensus       220 ~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~  249 (378)
                       |...|++++|+|+|++|++|+.||.+.+|
T Consensus       305 -~~~~v~~~~~s~d~~~l~t~s~D~~I~vW  333 (337)
T d1gxra_         305 -ESSSVLSCDISVDDKYIVTGSGDKKATVY  333 (337)
T ss_dssp             -CSSCEEEEEECTTSCEEEEEETTSCEEEE
T ss_pred             -CCCCEEEEEEeCCCCEEEEEeCCCeEEEE
Confidence             67789999999999888877777755554

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.5e-31  Score=231.35  Aligned_cols=212  Identities=13%  Similarity=0.122  Sum_probs=176.6

Q ss_pred             eeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCC----C--eEEeeccCCCe-eEEEE-----EEEEEeCCCe
Q 046394           36 RNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDG----T--ELHCSKEHGEV-LKLQF-----LLASINKLGQ  103 (378)
Q Consensus        36 ~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~----~--~~~~~~~~~~~-~~l~~-----~l~s~~~d~~  103 (378)
                      +.++.+ .|...|.+++|||+|++||+|+ ||.|+|||+..    .  ......+|.+. .+++|     +|++++.|+.
T Consensus        43 ~~~~~~-~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~  120 (337)
T d1gxra_          43 RQINTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEAST  120 (337)
T ss_dssp             EEEEEE-CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSE
T ss_pred             eEEEEC-CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeecccc
Confidence            344455 7889999999999999999987 89999999532    1  22334567765 99999     8999999999


Q ss_pred             EEEEEcCCC--cEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe--------------eeecCCCEEEEEEecCCCEEEE
Q 046394          104 LRYQNVTMG--EIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT--------------MLCHQGPVSALAFHPNGHLMAT  167 (378)
Q Consensus       104 i~iwd~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~--------------~~~h~~~v~~~~~sp~g~~l~t  167 (378)
                      |++||+...  .....+..|...+.+++|+|++.++++++.++.              ...|...|.+++|+|++.++++
T Consensus       121 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~  200 (337)
T d1gxra_         121 LSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWT  200 (337)
T ss_dssp             EEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            999998754  456777888899999999999999999999886              5668899999999999999999


Q ss_pred             EECCCeEEEEEcCCceeeeee--cCCceEEEEecCCCc----------cccCCCCCceEEEeeccCCcceeeeEEcCCCC
Q 046394          168 SGKDCKIKIWDLRKYEVLQTL--PGHAKTLDFSRKDSG----------DFSGSHNYNRYMGYSMVKGYQIGKVSFRPYED  235 (378)
Q Consensus       168 ~~~d~~i~iwd~~~~~~~~~~--~~~i~~~~~sp~g~~----------~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~  235 (378)
                      ++.|+.|++||+++++.+..+  ...+.+++|+|++.+          .+|+......+. ... |...|++++|+|+|+
T Consensus       201 ~~~d~~v~i~d~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~-~~~~i~~v~~s~~g~  278 (337)
T d1gxra_         201 GGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ-LHL-HESCVLSLKFAYCGK  278 (337)
T ss_dssp             EETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEE-ECC-CSSCEEEEEECTTSS
T ss_pred             ccccccccccccccceeecccccccceEEEEEcccccccceecccccccccccccccccc-ccc-cccccceEEECCCCC
Confidence            999999999999999998888  588999999998875          455555555443 334 788899999999999


Q ss_pred             eEEEecCCCeEEEEEc
Q 046394          236 VLGIGHSMGVSGILIP  251 (378)
Q Consensus       236 ~l~~~~~~g~~~~~~~  251 (378)
                      +|++|+.||.+.+|-.
T Consensus       279 ~l~s~s~Dg~i~iwd~  294 (337)
T d1gxra_         279 WFVSTGKDNLLNAWRT  294 (337)
T ss_dssp             EEEEEETTSEEEEEET
T ss_pred             EEEEEeCCCeEEEEEC
Confidence            9999999997776643

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.98  E-value=1.3e-29  Score=219.95  Aligned_cols=234  Identities=13%  Similarity=0.142  Sum_probs=207.7

Q ss_pred             ceeeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeeccCCCe-eEEE
Q 046394           15 VEKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKEHGEV-LKLQ   92 (378)
Q Consensus        15 ~~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~-~~l~   92 (378)
                      ....+..+.|+.|++||+.+++.+..+.+|...|.+++|+|++.++++++.++.+.+|+ ........+..|... .++.
T Consensus        29 ~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (317)
T d1vyhc1          29 FSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVS  108 (317)
T ss_dssp             SSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEE
T ss_pred             CCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeecccccccccccccccccccccccccccccccccccceeee
Confidence            34566778899999999999999999999999999999999999999999999999999 455666677777766 7788


Q ss_pred             E-----EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe--------------eeecCCCE
Q 046394           93 F-----LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT--------------MLCHQGPV  153 (378)
Q Consensus        93 ~-----~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~--------------~~~h~~~v  153 (378)
                      |     .+++++.|+.+.+||+.+++.+..+..|...+.+++|+|++.+|++++.|+.              +.+|...+
T Consensus       109 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i  188 (317)
T d1vyhc1         109 IMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVV  188 (317)
T ss_dssp             ECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCE
T ss_pred             ccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCc
Confidence            8     8999999999999999999999999999999999999999999999999987              56788899


Q ss_pred             EEEEEecC--------------------CCEEEEEECCCeEEEEEcCCceeeeee---cCCceEEEEecCCCc-------
Q 046394          154 SALAFHPN--------------------GHLMATSGKDCKIKIWDLRKYEVLQTL---PGHAKTLDFSRKDSG-------  203 (378)
Q Consensus       154 ~~~~~sp~--------------------g~~l~t~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~~sp~g~~-------  203 (378)
                      .+++|+|+                    +.++++++.|+.|++||+.+++++.++   ...+.+++|+|+|.+       
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d  268 (317)
T d1vyhc1         189 ECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADD  268 (317)
T ss_dssp             EEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETT
T ss_pred             eEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCCCEEEEEECCCCCEEEEEECC
Confidence            99999875                    357899999999999999999999888   478999999998875       


Q ss_pred             ---cccCCCCCceEEEeeccCCcceeeeEEcCCCCeEEEecCCCeEEEE
Q 046394          204 ---DFSGSHNYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGIL  249 (378)
Q Consensus       204 ---~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~  249 (378)
                         .+|+..+..++..+.+ |..+|++++|+|++++|++|+.||.+.+|
T Consensus       269 g~i~iwd~~~~~~~~~~~~-h~~~V~~~~~s~~~~~l~s~s~Dg~i~iW  316 (317)
T d1vyhc1         269 KTLRVWDYKNKRCMKTLNA-HEHFVTSLDFHKTAPYVVTGSVDQTVKVW  316 (317)
T ss_dssp             TEEEEECCTTSCCCEEEEC-CSSCEEEEEECSSSSCEEEEETTSEEEEE
T ss_pred             CeEEEEECCCCcEEEEEcC-CCCCEEEEEEcCCCCEEEEEeCCCeEEEe
Confidence               6788888888888888 88999999999999988888888866655

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=6.4e-30  Score=222.00  Aligned_cols=221  Identities=13%  Similarity=0.067  Sum_probs=194.2

Q ss_pred             eeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeeccCCCe-eEEEE-----EEEEEeCC
Q 046394           29 EVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKEHGEV-LKLQF-----LLASINKL  101 (378)
Q Consensus        29 ~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~-~~l~~-----~l~s~~~d  101 (378)
                      .|... ....+.|.+|.+.|++|+|+|++++||+|+.||+|+||| .++..+..+.+|... .+++|     ++++++.+
T Consensus         2 ~w~p~-~~~~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~   80 (317)
T d1vyhc1           2 EWIPR-PPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSAD   80 (317)
T ss_dssp             CCCCC-SSCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             ccCCC-CCccEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeecccccccccccc
Confidence            35332 344578999999999999999999999999999999999 567888999999876 99999     89999999


Q ss_pred             CeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe--------------eeecCCCEEEEEEecCCCEEEE
Q 046394          102 GQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT--------------MLCHQGPVSALAFHPNGHLMAT  167 (378)
Q Consensus       102 ~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~--------------~~~h~~~v~~~~~sp~g~~l~t  167 (378)
                      +.+.+|+.........+..+...+.++.|+|++..+++++.|+.              +.+|...+.+++|+|++.+|++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  160 (317)
T d1vyhc1          81 MTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIAS  160 (317)
T ss_dssp             SCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred             cccccccccccccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEE
Confidence            99999999999888888889999999999999999999999987              5678999999999999999999


Q ss_pred             EECCCeEEEEEcCCceeeeee---cCCceEEEEecCCCc------------------------------cccCCCCCceE
Q 046394          168 SGKDCKIKIWDLRKYEVLQTL---PGHAKTLDFSRKDSG------------------------------DFSGSHNYNRY  214 (378)
Q Consensus       168 ~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~~sp~g~~------------------------------~~~~~~~~~~~  214 (378)
                      ++.|+.|++|++.++..+..+   ...+.++.|+|++..                              .+|+..+..++
T Consensus       161 ~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~  240 (317)
T d1vyhc1         161 CSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCL  240 (317)
T ss_dssp             EETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEE
T ss_pred             EeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEE
Confidence            999999999999999988887   467888898886542                              45667777788


Q ss_pred             EEeeccCCcceeeeEEcCCCCeEEEecCCCeEEEEEc
Q 046394          215 MGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILIP  251 (378)
Q Consensus       215 ~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~~  251 (378)
                      ..+.+ |..+|.++.|+|++.+|++|+.||.+.+|..
T Consensus       241 ~~~~~-~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~  276 (317)
T d1vyhc1         241 MTLVG-HDNWVRGVLFHSGGKFILSCADDKTLRVWDY  276 (317)
T ss_dssp             EEEEC-CSSCEEEEEECSSSSCEEEEETTTEEEEECC
T ss_pred             EEEeC-CCCCEEEEEECCCCCEEEEEECCCeEEEEEC
Confidence            88888 8889999999999999999999987776643

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=3.2e-29  Score=225.19  Aligned_cols=230  Identities=13%  Similarity=0.137  Sum_probs=181.4

Q ss_pred             eEEEeccceeeeeecccceeeEEee------------------cCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCe
Q 046394           18 TWRIKQEAIAREVDILSSRNQYDIM------------------LPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTE   78 (378)
Q Consensus        18 ~~~~~~~~~i~~~d~~~~~~~~~l~------------------~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~   78 (378)
                      .+....|+.|++||+.+++.+..+.                  .|...|.+++|+|+|++|++|+.||.|++|| ..+..
T Consensus        76 ~lasg~d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~  155 (388)
T d1erja_          76 YLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKI  155 (388)
T ss_dssp             EEEEECBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEE
T ss_pred             EEEEEeCCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcceeccccccccccccccccc
Confidence            4444558899999999988776654                  3555699999999999999999999999999 56677


Q ss_pred             EEeeccCCCe-eEEEE-----EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe-------
Q 046394           79 LHCSKEHGEV-LKLQF-----LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT-------  145 (378)
Q Consensus        79 ~~~~~~~~~~-~~l~~-----~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~-------  145 (378)
                      +..+.+|... .++.|     .+++++.++.+++||+.+.........+...+..+.+.+++.+|++++.|+.       
T Consensus       156 ~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~  235 (388)
T d1erja_         156 VMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSE  235 (388)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETT
T ss_pred             ccccccccccccccccccccccccccccceeeeeeeccccccccccccccccccccccCCCCCeEEEEcCCCeEEEeecc
Confidence            7888888876 88888     8999999999999999998888777666555555555568899999999887       


Q ss_pred             --------------eeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeee------------ee---cCCceEEE
Q 046394          146 --------------MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQ------------TL---PGHAKTLD  196 (378)
Q Consensus       146 --------------~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~------------~~---~~~i~~~~  196 (378)
                                    ..+|.+.|.+++|+|++++|++++.|+.|++||++++....            ..   ...+.+++
T Consensus       236 ~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  315 (388)
T d1erja_         236 TGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVA  315 (388)
T ss_dssp             TCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEE
T ss_pred             cCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEE
Confidence                          34688899999999999999999999999999998654321            11   35789999


Q ss_pred             EecCCCc----------cccCCCCCceEEEeeccCCcceeeeEE------cCCCCeEEEecCCCeEEE
Q 046394          197 FSRKDSG----------DFSGSHNYNRYMGYSMVKGYQIGKVSF------RPYEDVLGIGHSMGVSGI  248 (378)
Q Consensus       197 ~sp~g~~----------~~~~~~~~~~~~~~~~~~~~~v~~~~~------sp~g~~l~~~~~~g~~~~  248 (378)
                      |+|+|.+          .+|+..+..++..+.+ |...|+++++      +|++.+||+|+.||.+.+
T Consensus       316 ~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~-H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~i  382 (388)
T d1erja_         316 TTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQG-HRNSVISVAVANGSSLGPEYNVFATGSGDCKARI  382 (388)
T ss_dssp             ECGGGCEEEEEETTSEEEEEETTTCCEEEEEEC-CSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEE
T ss_pred             ECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeC-CCCCEEEEEEecCcccCCCCCEEEEEeCCCEEEE
Confidence            9998764          7788888899999988 8888998865      667755555555554333

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.97  E-value=3.4e-28  Score=213.78  Aligned_cols=234  Identities=16%  Similarity=0.157  Sum_probs=202.6

Q ss_pred             ceeeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCC-----CCeEEeeccCCCe-
Q 046394           15 VEKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRD-----GTELHCSKEHGEV-   88 (378)
Q Consensus        15 ~~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~-----~~~~~~~~~~~~~-   88 (378)
                      ....+..+.|+.|++||+.+++.+..+..|...|.+++|+|++.++++|+.|+.+.+|+..     ......+.+|... 
T Consensus        67 ~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~  146 (340)
T d1tbga_          67 SRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYL  146 (340)
T ss_dssp             SSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCE
T ss_pred             CCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeecccccccccccccceecccccccc
Confidence            3456677889999999999999999999999999999999999999999999999999932     2345667777776 


Q ss_pred             eEEEE----EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe--------------eeecC
Q 046394           89 LKLQF----LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT--------------MLCHQ  150 (378)
Q Consensus        89 ~~l~~----~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~--------------~~~h~  150 (378)
                      .....    .++.+..|.....++............+...+....+.+.+.++++++.++.              +.+|.
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~  226 (340)
T d1tbga_         147 SCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHE  226 (340)
T ss_dssp             EEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECCCS
T ss_pred             cccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEEeecCceEEEEECCCCcEEEEEeCCC
Confidence            33333    7888889999999999888888788788889999999999999999999887              56799


Q ss_pred             CCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee-----cCCceEEEEecCCCc----------cccCCCCCceEE
Q 046394          151 GPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL-----PGHAKTLDFSRKDSG----------DFSGSHNYNRYM  215 (378)
Q Consensus       151 ~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~-----~~~i~~~~~sp~g~~----------~~~~~~~~~~~~  215 (378)
                      ..|++++|+|++++|++++.|+.|++||++....+..+     ...+++++|+|+|.+          .+|+.....++.
T Consensus       227 ~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~  306 (340)
T d1tbga_         227 SDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAG  306 (340)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEE
T ss_pred             CCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEE
Confidence            99999999999999999999999999999998887766     356899999998764          678888888888


Q ss_pred             EeeccCCcceeeeEEcCCCCeEEEecCCCeEEEE
Q 046394          216 GYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGIL  249 (378)
Q Consensus       216 ~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~  249 (378)
                      .+.+ |..+|++++|+|+|.+|++|+.||.+.+|
T Consensus       307 ~~~~-H~~~V~~l~~s~d~~~l~s~s~Dg~v~iW  339 (340)
T d1tbga_         307 VLAG-HDNRVSCLGVTDDGMAVATGSWDSFLKIW  339 (340)
T ss_dssp             EECC-CSSCEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred             EEcC-CCCCEEEEEEeCCCCEEEEEccCCEEEEe
Confidence            8888 88999999999999888888888766555

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.97  E-value=1e-28  Score=221.19  Aligned_cols=188  Identities=11%  Similarity=0.016  Sum_probs=158.6

Q ss_pred             eeeEEEeccceeeeeecccce--eeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCCC---eEEeeccCCCe-e
Q 046394           16 EKTWRIKQEAIAREVDILSSR--NQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGT---ELHCSKEHGEV-L   89 (378)
Q Consensus        16 ~~~~~~~~~~~i~~~d~~~~~--~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~-~   89 (378)
                      ...+....++.|++||+.+++  .+..+.+|...|.+++|+|++++|++|+.|+.|+|||....   ....+.+|... .
T Consensus        20 ~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~   99 (371)
T d1k8kc_          20 TQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAAR   99 (371)
T ss_dssp             SEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEE
T ss_pred             CEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccccccccccccccccccc
Confidence            344455678899999998774  67778999999999999999999999999999999995433   23445666664 9


Q ss_pred             EEEE-----EEEEEeCCCeEEEEEcCCCcE----EEEEecCCCCeeEEEEcCCCCEEEEEcCCCe---------------
Q 046394           90 KLQF-----LLASINKLGQLRYQNVTMGEI----VGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT---------------  145 (378)
Q Consensus        90 ~l~~-----~l~s~~~d~~i~iwd~~~~~~----~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~---------------  145 (378)
                      +++|     .|++++.|++|++|++.....    ......|...|.+++|+|++.+|++|+.|+.               
T Consensus       100 ~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~  179 (371)
T d1k8kc_         100 CVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERP  179 (371)
T ss_dssp             EEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCC
T ss_pred             ccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccCcEEEEEeeccCcccccc
Confidence            9999     899999999999999877543    2233457789999999999999999998876               


Q ss_pred             -----------------eeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee---cCCceEEEEecCCCc
Q 046394          146 -----------------MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL---PGHAKTLDFSRKDSG  203 (378)
Q Consensus       146 -----------------~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~~sp~g~~  203 (378)
                                       ...|.+.|.+++|+|+|++|++++.|+.|++||+.++..+..+   ..++.+++|+|+|.+
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~d~~~  257 (371)
T d1k8kc_         180 APTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSL  257 (371)
T ss_dssp             CCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEE
T ss_pred             ccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecccceeeeecccccceeeeecCCCCE
Confidence                             3467788999999999999999999999999999999998888   368999999999864

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.97  E-value=3.9e-29  Score=216.75  Aligned_cols=215  Identities=12%  Similarity=0.066  Sum_probs=169.0

Q ss_pred             ceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeC-CCCeEEeec-cCCCe-eEEEE----EEEEEeCCCeEEEE
Q 046394           35 SRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNR-DGTELHCSK-EHGEV-LKLQF----LLASINKLGQLRYQ  107 (378)
Q Consensus        35 ~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~-~~~~~~~~~-~~~~~-~~l~~----~l~s~~~d~~i~iw  107 (378)
                      |.....+.+|..+|++++|+|+|++|++|+.||.|++||. ++..+..+. .|... ++++|    .+++++.|+.+++|
T Consensus         2 g~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~~~~~d~~v~~~   81 (299)
T d1nr0a2           2 GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVV   81 (299)
T ss_dssp             TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEE
T ss_pred             CccceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccceeecccceeeEEEe
Confidence            4567789999999999999999999999999999999994 567777764 56665 99999    67778889999999


Q ss_pred             EcCCCcE---EEEEecCCCCeeEEEEcCCCCEEEEEcCCCe---------eeecCCCEEEEEEecCCCEEEEEECCCeEE
Q 046394          108 NVTMGEI---VGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT---------MLCHQGPVSALAFHPNGHLMATSGKDCKIK  175 (378)
Q Consensus       108 d~~~~~~---~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~---------~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~  175 (378)
                      ++.....   ......+...+.+++|+|++.++++++.+..         .......+.+++|+|++++|++++.|+.|+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~  161 (299)
T d1nr0a2          82 PAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVH  161 (299)
T ss_dssp             CSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEE
T ss_pred             ccCCcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            9865321   1122345678899999999998888777654         223456789999999999999999999999


Q ss_pred             EEEcCCceeeee--e--cCCceEEEEecCCCc----------cccCCCCCceE---EEeeccCCcceeeeEEcCCCCeEE
Q 046394          176 IWDLRKYEVLQT--L--PGHAKTLDFSRKDSG----------DFSGSHNYNRY---MGYSMVKGYQIGKVSFRPYEDVLG  238 (378)
Q Consensus       176 iwd~~~~~~~~~--~--~~~i~~~~~sp~g~~----------~~~~~~~~~~~---~~~~~~~~~~v~~~~~sp~g~~l~  238 (378)
                      +||+.++.....  .  ...|++++|+|++.+          .+|+.......   ..+.+ |..+|++++|+|+|.+|+
T Consensus       162 ~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~s~~~~~l~  240 (299)
T d1nr0a2         162 VYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTF-HTAKVACVSWSPDNVRLA  240 (299)
T ss_dssp             EEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCC-CSSCEEEEEECTTSSEEE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccceE
Confidence            999988776433  2  478999999998875          34443333222   23344 778899999999999999


Q ss_pred             EecCCCeEEEEE
Q 046394          239 IGHSMGVSGILI  250 (378)
Q Consensus       239 ~~~~~g~~~~~~  250 (378)
                      +|+.||.+.+|.
T Consensus       241 sgs~dg~i~iwd  252 (299)
T d1nr0a2         241 TGSLDNSVIVWN  252 (299)
T ss_dssp             EEETTSCEEEEE
T ss_pred             EEcCCCEEEEEE
Confidence            999988776554

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.97  E-value=6.8e-29  Score=222.33  Aligned_cols=199  Identities=15%  Similarity=0.117  Sum_probs=167.9

Q ss_pred             CCCceEEEEcCCCCEEEEEeCCCcEEEEeCCCC---eEEeeccCCCe-eEEEE-----EEEEEeCCCeEEEEEcCCCcEE
Q 046394           45 ELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGT---ELHCSKEHGEV-LKLQF-----LLASINKLGQLRYQNVTMGEIV  115 (378)
Q Consensus        45 ~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~-~~l~~-----~l~s~~~d~~i~iwd~~~~~~~  115 (378)
                      ..+|+|++|+|+|++||+|+.||.|+|||..+.   .+..+.+|.+. .+++|     +|++|+.|++|++||+.++...
T Consensus         7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~   86 (371)
T d1k8kc_           7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWK   86 (371)
T ss_dssp             SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEE
T ss_pred             CCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccccc
Confidence            367999999999999999999999999996443   45778899876 99999     9999999999999999887644


Q ss_pred             --EEEecCCCCeeEEEEcCCCCEEEEEcCCCe------------------eeecCCCEEEEEEecCCCEEEEEECCCeEE
Q 046394          116 --GNFWTGLGRTDVIRVNPFNGVVSLGHSGGT------------------MLCHQGPVSALAFHPNGHLMATSGKDCKIK  175 (378)
Q Consensus       116 --~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~------------------~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~  175 (378)
                        ..+..+...|.+++|+|+++.|++++.++.                  ...|...|.+++|+|++++|++++.|++|+
T Consensus        87 ~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~  166 (371)
T d1k8kc_          87 PTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCR  166 (371)
T ss_dssp             EEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             cccccccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccCcEEE
Confidence              445567889999999999999999999986                  335788999999999999999999999999


Q ss_pred             EEEcCCce------------------eeeee---cCCceEEEEecCCCc----------cccCCCCCceEEEeeccCCcc
Q 046394          176 IWDLRKYE------------------VLQTL---PGHAKTLDFSRKDSG----------DFSGSHNYNRYMGYSMVKGYQ  224 (378)
Q Consensus       176 iwd~~~~~------------------~~~~~---~~~i~~~~~sp~g~~----------~~~~~~~~~~~~~~~~~~~~~  224 (378)
                      +||+....                  ++...   ...+.+++|+|+|.+          .+|+......+..+.. |..+
T Consensus       167 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~~~~  245 (371)
T d1k8kc_         167 IFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLAS-ETLP  245 (371)
T ss_dssp             EEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEEC-SSCC
T ss_pred             EEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecccceeeeec-cccc
Confidence            99986432                  23333   356899999998874          6777777788888877 8889


Q ss_pred             eeeeEEcCCCCeEEEecCCC
Q 046394          225 IGKVSFRPYEDVLGIGHSMG  244 (378)
Q Consensus       225 v~~~~~sp~g~~l~~~~~~g  244 (378)
                      |.+++|+|+|.+|++|.++.
T Consensus       246 v~s~~fs~d~~~la~g~d~~  265 (371)
T d1k8kc_         246 LLAVTFITESSLVAAGHDCF  265 (371)
T ss_dssp             EEEEEEEETTEEEEEETTSS
T ss_pred             ceeeeecCCCCEEEEEcCCc
Confidence            99999999999888877544

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.97  E-value=7.1e-29  Score=216.71  Aligned_cols=206  Identities=11%  Similarity=0.067  Sum_probs=170.8

Q ss_pred             CCceEEEEcCCCCEEEEEeCCCcEEEEeC-CCCeEEeeccCCCe-eEEEE-----EEEEEeCCCeEEEEEcCCCcE--EE
Q 046394           46 LGPYTLDFTSSGRYMAAAGCKGYPYFYNR-DGTELHCSKEHGEV-LKLQF-----LLASINKLGQLRYQNVTMGEI--VG  116 (378)
Q Consensus        46 ~~v~~~~~sp~g~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~-~~l~~-----~l~s~~~d~~i~iwd~~~~~~--~~  116 (378)
                      +.+..++++|+|+.|+.++ ++.|.+||. ++...+.+.+|... ++++|     +|++|+.||+|++||+.++..  ..
T Consensus        18 ~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~   96 (311)
T d1nr0a1          18 GTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKT   96 (311)
T ss_dssp             TCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEE
T ss_pred             CCeEEEEEcCCCCEEEEEe-CCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeecccccccc
Confidence            4566899999999999885 557999995 56677888999876 99999     999999999999999988764  35


Q ss_pred             EEecCCCCeeEEEEcCCCCEEEEEcCCCe----------------eeecCCCEEEEEEecCCCE-EEEEECCCeEEEEEc
Q 046394          117 NFWTGLGRTDVIRVNPFNGVVSLGHSGGT----------------MLCHQGPVSALAFHPNGHL-MATSGKDCKIKIWDL  179 (378)
Q Consensus       117 ~~~~~~~~v~~~~~s~~~~~l~~~~~d~~----------------~~~h~~~v~~~~~sp~g~~-l~t~~~d~~i~iwd~  179 (378)
                      .+..|...|.+++|+|++++|++++.+..                +.+|...|++++|+|++.+ |++|+.|+.|++||+
T Consensus        97 ~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~  176 (311)
T d1nr0a1          97 TIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEG  176 (311)
T ss_dssp             EEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEET
T ss_pred             ccccccCccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeecccccccccccccc
Confidence            67788999999999999999998876532                6778999999999999885 888999999999999


Q ss_pred             CCceeeeee---cCCceEEEEecCCCc----------cccCCCCCceEEEeec------cCCcceeeeEEcCCCCeEEEe
Q 046394          180 RKYEVLQTL---PGHAKTLDFSRKDSG----------DFSGSHNYNRYMGYSM------VKGYQIGKVSFRPYEDVLGIG  240 (378)
Q Consensus       180 ~~~~~~~~~---~~~i~~~~~sp~g~~----------~~~~~~~~~~~~~~~~------~~~~~v~~~~~sp~g~~l~~~  240 (378)
                      +++++...+   ...|+++.|+|++.+          .+|+.........+..      .|...|++++|+|+|++|++|
T Consensus       177 ~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tg  256 (311)
T d1nr0a1         177 PPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASA  256 (311)
T ss_dssp             TTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEE
T ss_pred             cccccccccccccccccccccCccccccccccccccccccccccccccccccccccccccccccccccccCCCCCEEEEE
Confidence            999988887   368999999998875          4555555544444332      166789999999999999999


Q ss_pred             cCCCeEEEEEcC
Q 046394          241 HSMGVSGILIPG  252 (378)
Q Consensus       241 ~~~g~~~~~~~~  252 (378)
                      +.||.+.+|...
T Consensus       257 s~Dg~v~iwd~~  268 (311)
T d1nr0a1         257 SADKTIKIWNVA  268 (311)
T ss_dssp             ETTSEEEEEETT
T ss_pred             eCCCeEEEEECC
Confidence            988887777643

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=1.6e-27  Score=213.86  Aligned_cols=231  Identities=14%  Similarity=0.134  Sum_probs=179.3

Q ss_pred             EEEeccceeeeeeccccee----eEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeecc---------
Q 046394           19 WRIKQEAIAREVDILSSRN----QYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKE---------   84 (378)
Q Consensus        19 ~~~~~~~~i~~~d~~~~~~----~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~---------   84 (378)
                      +....++...+|+......    +.....|.+.|+||+|||||++||+|+ |+.|+||| .++..+..+..         
T Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~  110 (388)
T d1erja_          32 LKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPE  110 (388)
T ss_dssp             SEEECSSCEEEECTTSCCCEEEEEEEEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC---------
T ss_pred             cccCCCCcEEEeCCCCCcceeeeeEeeCCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeeccccccccccc
Confidence            4455566677777654432    223346999999999999999999986 89999999 45666555432         


Q ss_pred             ---------CCC-eeEEEE-----EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe----
Q 046394           85 ---------HGE-VLKLQF-----LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT----  145 (378)
Q Consensus        85 ---------~~~-~~~l~~-----~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~----  145 (378)
                               |.. +.+++|     +|++|+.||.|++||...++.+..+..|...|.++++++++..+++++.++.    
T Consensus       111 ~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~  190 (388)
T d1erja_         111 NLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIW  190 (388)
T ss_dssp             --------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             ccccccccCCCCCEEEEEECCCCCcceecccccccccccccccccccccccccccccccccccccccccccccceeeeee
Confidence                     333 378899     9999999999999999999999999999999999999999999999999887    


Q ss_pred             ---------eeecCCCEEEEEEec-CCCEEEEEECCCeEEEEEcCCceeeeee----------cCCceEEEEecCCCc--
Q 046394          146 ---------MLCHQGPVSALAFHP-NGHLMATSGKDCKIKIWDLRKYEVLQTL----------PGHAKTLDFSRKDSG--  203 (378)
Q Consensus       146 ---------~~~h~~~v~~~~~sp-~g~~l~t~~~d~~i~iwd~~~~~~~~~~----------~~~i~~~~~sp~g~~--  203 (378)
                               ...+.....++.++| ++++|++++.|+.|++||+.++..+..+          ...|.+++|+|+|.+  
T Consensus       191 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~  270 (388)
T d1erja_         191 DLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVV  270 (388)
T ss_dssp             ETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEE
T ss_pred             eccccccccccccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEE
Confidence                     233445566666666 8899999999999999999998887665          246899999999875  


Q ss_pred             --------cccCCCCC------------ceEEEeeccCCcceeeeEEcCCCCeEEEecCCCeEEEEEc
Q 046394          204 --------DFSGSHNY------------NRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILIP  251 (378)
Q Consensus       204 --------~~~~~~~~------------~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~~  251 (378)
                              .+|+....            ........ |...|++++|+|+|.+|++|+.||.+.+|..
T Consensus       271 s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~  337 (388)
T d1erja_         271 SGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIG-HKDFVLSVATTQNDEYILSGSKDRGVLFWDK  337 (388)
T ss_dssp             EEETTSEEEEEEC---------------CEEEEEEC-CSSCEEEEEECGGGCEEEEEETTSEEEEEET
T ss_pred             EEECCCcEEEEeccCCccccccccccccceeeeccc-ccceEEEEEECCCCCEEEEEeCCCEEEEEEC
Confidence                    33332221            12233334 7788999999999999999999997765543

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.96  E-value=1.8e-26  Score=202.56  Aligned_cols=217  Identities=16%  Similarity=0.162  Sum_probs=173.4

Q ss_pred             eeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeeccCCCe-eEEEE-----EEEEEeCCCeEEEEE
Q 046394           36 RNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKEHGEV-LKLQF-----LLASINKLGQLRYQN  108 (378)
Q Consensus        36 ~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~-~~l~~-----~l~s~~~d~~i~iwd  108 (378)
                      +...+|.+|.+.|++++|+|++.+||+|+.||.|+||| .++..+..+..|... .+++|     ++++++.|+.+.+|+
T Consensus        46 ~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~  125 (340)
T d1tbga_          46 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYN  125 (340)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEE
T ss_pred             eeeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeeccc
Confidence            45678999999999999999999999999999999999 567788889999876 99999     999999999999999


Q ss_pred             cCCC----cEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe--------------eeecCCCEEEEEEecCCCEEEEEEC
Q 046394          109 VTMG----EIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT--------------MLCHQGPVSALAFHPNGHLMATSGK  170 (378)
Q Consensus       109 ~~~~----~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~--------------~~~h~~~v~~~~~sp~g~~l~t~~~  170 (378)
                      ....    .....+..+...........+. .+.....+..              ...+...+....+.+.+.++++++.
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (340)
T d1tbga_         126 LKTREGNVRVSRELAGHTGYLSCCRFLDDN-QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGAC  204 (340)
T ss_dssp             SSSSCSCCCEEEEECCCSSCEEEEEEEETT-EEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred             ccccccccccceeccccccccccccccccc-ccccccccccccccccccccccccccccceeEeeeccccccceeEEeec
Confidence            7653    3455666666655555544444 4444444443              4556778899999999999999999


Q ss_pred             CCeEEEEEcCCceeeeee---cCCceEEEEecCCCc----------cccCCCCCceEEEeec-cCCcceeeeEEcCCCCe
Q 046394          171 DCKIKIWDLRKYEVLQTL---PGHAKTLDFSRKDSG----------DFSGSHNYNRYMGYSM-VKGYQIGKVSFRPYEDV  236 (378)
Q Consensus       171 d~~i~iwd~~~~~~~~~~---~~~i~~~~~sp~g~~----------~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~g~~  236 (378)
                      |+.|++||+++++++.++   ...|++++|+|+|.+          .+|+.........+.. .+...|++++|+|+|.+
T Consensus       205 d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~  284 (340)
T d1tbga_         205 DASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRL  284 (340)
T ss_dssp             TTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCE
T ss_pred             CceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCCCCE
Confidence            999999999999999988   378999999998875          4566555555544422 25667999999999999


Q ss_pred             EEEecCCCeEEEEEcCC
Q 046394          237 LGIGHSMGVSGILIPGS  253 (378)
Q Consensus       237 l~~~~~~g~~~~~~~~s  253 (378)
                      |++|+.||.+.+|...+
T Consensus       285 l~~g~~dg~i~iwd~~~  301 (340)
T d1tbga_         285 LLAGYDDFNCNVWDALK  301 (340)
T ss_dssp             EEEEETTSCEEEEETTT
T ss_pred             EEEEECCCEEEEEECCC
Confidence            99999999877775443

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=1.9e-24  Score=190.33  Aligned_cols=230  Identities=13%  Similarity=0.078  Sum_probs=169.6

Q ss_pred             eeeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCCC-eEEeeccCCCe---eEE
Q 046394           16 EKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGT-ELHCSKEHGEV---LKL   91 (378)
Q Consensus        16 ~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~---~~l   91 (378)
                      +..+..+.|+.|++||+.+++.+..+.+|...|++++|+|+ .+|++|+.||.|++|+.... ...........   ...
T Consensus        24 ~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~  102 (355)
T d1nexb2          24 NYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDI  102 (355)
T ss_dssp             TEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCC-CEEEEEeccccccccccccccccccccccccccccccc
Confidence            45677788999999999999999999999999999999986 58999999999999995332 22222111111   111


Q ss_pred             EE-----EE---------------------------------------------------------------EEEeCCCe
Q 046394           92 QF-----LL---------------------------------------------------------------ASINKLGQ  103 (378)
Q Consensus        92 ~~-----~l---------------------------------------------------------------~s~~~d~~  103 (378)
                      .+     .+                                                               +++..|+.
T Consensus       103 ~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~  182 (355)
T d1nexb2         103 VEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNT  182 (355)
T ss_dssp             EEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEETTSC
T ss_pred             ccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccccccccccccceeeeecccce
Confidence            11     34                                                               44444555


Q ss_pred             EEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe--------------eeecCCCEEEEEEecCCCEEEEEE
Q 046394          104 LRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT--------------MLCHQGPVSALAFHPNGHLMATSG  169 (378)
Q Consensus       104 i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~--------------~~~h~~~v~~~~~sp~g~~l~t~~  169 (378)
                      |++||+.+++.+..+..+...+.++.|+|++..+++++.|+.              +.+|...|.+++|++  ++|++++
T Consensus       183 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~~--~~l~~~~  260 (355)
T d1nexb2         183 LIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSD--KFLVSAA  260 (355)
T ss_dssp             EEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEECS--SEEEEEC
T ss_pred             eeeeecccccceeeeeccccccccccccccceeeecccccceEEeeecccccccccccccccccccccccc--ceeeeee
Confidence            555555555555556666777889999999999999999987              667999999999874  6999999


Q ss_pred             CCCeEEEEEcCCceeeeee-cCCceEE-EEecCCC---------ccccCCCCCceEEE-eeccCCcceeeeEEcCCCCeE
Q 046394          170 KDCKIKIWDLRKYEVLQTL-PGHAKTL-DFSRKDS---------GDFSGSHNYNRYMG-YSMVKGYQIGKVSFRPYEDVL  237 (378)
Q Consensus       170 ~d~~i~iwd~~~~~~~~~~-~~~i~~~-~~sp~g~---------~~~~~~~~~~~~~~-~~~~~~~~v~~~~~sp~g~~l  237 (378)
                      .||+|++||+.++...... +..+.++ .+++++.         ..+|+..+++++.. ..+ |..+|++++|+|+ .++
T Consensus       261 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~d~~i~vwd~~tg~~~~~~~~~-~~~~V~~v~~~~~-~~~  338 (355)
T d1nexb2         261 ADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILK-DADQIWSVNFKGK-TLV  338 (355)
T ss_dssp             TTSEEEEEETTTCCEEEEEECTTCCCCCEEEECSSEEEEEETTEEEEEETTTCCBCCSCTTT-TCSEEEEEEEETT-EEE
T ss_pred             cccccccccccccceecccccCCceEEEEEcCCCCEEEEEeCCEEEEEECCCCCEEEEEecC-CCCCEEEEEEcCC-eEE
Confidence            9999999999988776666 3444443 4455544         47888887777643 344 8889999999987 467


Q ss_pred             EEecCCCeEEEEE
Q 046394          238 GIGHSMGVSGILI  250 (378)
Q Consensus       238 ~~~~~~g~~~~~~  250 (378)
                      ++++.||.+.+|+
T Consensus       339 ~~~s~dg~~~l~~  351 (355)
T d1nexb2         339 AAVEKDGQSFLEI  351 (355)
T ss_dssp             EEEESSSCEEEEE
T ss_pred             EEEECCCcEEEEE
Confidence            7777788655443

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=5.7e-24  Score=186.16  Aligned_cols=236  Identities=12%  Similarity=0.090  Sum_probs=179.5

Q ss_pred             ceeeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEe-eccCC-------
Q 046394           15 VEKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTELHC-SKEHG-------   86 (378)
Q Consensus        15 ~~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~-------   86 (378)
                      ....+..+.|+.|++||+.+++.+..+.+|...|.+++|+|+  +|++|+.|+.+++|+........ ...+.       
T Consensus        27 g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (342)
T d2ovrb2          27 GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMH  104 (342)
T ss_dssp             TTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEE
T ss_pred             CCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCC--ccccceecccccccccccccceecccccceeEeeee
Confidence            346777888999999999999999999999999999999975  99999999999999954322111 11000       


Q ss_pred             ---------------------------------Ce-eEEEE---EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEE
Q 046394           87 ---------------------------------EV-LKLQF---LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIR  129 (378)
Q Consensus        87 ---------------------------------~~-~~l~~---~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~  129 (378)
                                                       .. .....   .+++++.|+.|++||+.....+..+..|...+..  
T Consensus       105 ~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~--  182 (342)
T d2ovrb2         105 LHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYS--  182 (342)
T ss_dssp             EETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEE--
T ss_pred             cccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEEEeecccceeeEEEcCccccccc--
Confidence                                             00 00000   6788889999999999999888888877665544  


Q ss_pred             EcCCCCEEEEEcCCCe--------------eeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee-----c-
Q 046394          130 VNPFNGVVSLGHSGGT--------------MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL-----P-  189 (378)
Q Consensus       130 ~s~~~~~l~~~~~d~~--------------~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~-----~-  189 (378)
                      +++++.++++++.|+.              +.+|...+.++++++  ++|++++.|+.|++||+...+....+     + 
T Consensus       183 ~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~  260 (342)
T d2ovrb2         183 LQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD--NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQ  260 (342)
T ss_dssp             EEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEET--TEEEEEETTSCEEEEETTTCCEEEEECSTTSCS
T ss_pred             ccCCCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecCC--CEEEEEcCCCEEEEEecccccccccccccceee
Confidence            5557889999999997              567888888887764  69999999999999999988877666     1 


Q ss_pred             CCceEEEEec--------CCCccccCCCCCceEEEeec----cCCcceeeeEEcCCCCeEEEecCCCeEEEEEcCCCCcc
Q 046394          190 GHAKTLDFSR--------KDSGDFSGSHNYNRYMGYSM----VKGYQIGKVSFRPYEDVLGIGHSMGVSGILIPGSGEPN  257 (378)
Q Consensus       190 ~~i~~~~~sp--------~g~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~~~s~d~~  257 (378)
                      ..+.++.+++        ||...+|+..+++.+..+..    .|...|++++|+|++.+||+|+.||.        .+..
T Consensus       261 ~~~~~~~~~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt--------~~~~  332 (342)
T d2ovrb2         261 SAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGT--------EETK  332 (342)
T ss_dssp             SCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSS--------SCCE
T ss_pred             eceeecccCCCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCCC--------CeeE
Confidence            3445555544        55668999888888776642    26678999999999988888888863        3445


Q ss_pred             cccccCC
Q 046394          258 FDSWVAN  264 (378)
Q Consensus       258 i~~w~~~  264 (378)
                      +.+|+.+
T Consensus       333 l~~~Df~  339 (342)
T d2ovrb2         333 LLVLDFD  339 (342)
T ss_dssp             EEEEECC
T ss_pred             EEEEeCC
Confidence            6667653

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=3.7e-24  Score=187.65  Aligned_cols=224  Identities=13%  Similarity=0.073  Sum_probs=162.5

Q ss_pred             ceeeeeecccc--eeeEEeecCC-CCceEEEEcC--CCCEEEEEeCCCcEEEEeCC-CC--------eEEeeccCCCe-e
Q 046394           25 AIAREVDILSS--RNQYDIMLPE-LGPYTLDFTS--SGRYMAAAGCKGYPYFYNRD-GT--------ELHCSKEHGEV-L   89 (378)
Q Consensus        25 ~~i~~~d~~~~--~~~~~l~~~~-~~v~~~~~sp--~g~~l~~~~~dg~i~iwd~~-~~--------~~~~~~~~~~~-~   89 (378)
                      ..++.||....  .....+.+|. ..|++++|+|  +|.+|++|+.||+|+|||.. +.        ....+..|.+. .
T Consensus        40 ~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~  119 (325)
T d1pgua1          40 AFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPIS  119 (325)
T ss_dssp             EEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEE
T ss_pred             EEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEE
Confidence            34566765444  3466777874 5799999998  56899999999999999942 11        11234556665 8


Q ss_pred             EEEE-----EEEEEe--CCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCE-EEEEcCCCe----------------
Q 046394           90 KLQF-----LLASIN--KLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGV-VSLGHSGGT----------------  145 (378)
Q Consensus        90 ~l~~-----~l~s~~--~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~~d~~----------------  145 (378)
                      +++|     .+++++  .++.+.+|++.+++.+..+..|...+.+++|+|++.. +++++.|+.                
T Consensus       120 ~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~  199 (325)
T d1pgua1         120 DISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDR  199 (325)
T ss_dssp             EEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEEC
T ss_pred             EEEECCCCCccceeeccccceEEEEeecccccceeeeecccccccccccccccceEEEeecccccccccccccccceecc
Confidence            9999     555444  4778999999999999999999999999999999875 677888887                


Q ss_pred             -eeecCCCEEEEEEecC-CCEEEEEECCCeEEEEEcCCceeeeee---cCCceEEEEe---cCCC----------ccccC
Q 046394          146 -MLCHQGPVSALAFHPN-GHLMATSGKDCKIKIWDLRKYEVLQTL---PGHAKTLDFS---RKDS----------GDFSG  207 (378)
Q Consensus       146 -~~~h~~~v~~~~~sp~-g~~l~t~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~~s---p~g~----------~~~~~  207 (378)
                       ...|...|.+++|+|+ +.+|++++.|+.|++||+++++++.++   ..++..+.|+   |+|.          ..+|+
T Consensus       200 ~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd  279 (325)
T d1pgua1         200 THHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWD  279 (325)
T ss_dssp             SSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEE
T ss_pred             cccCCCCccEEeeeccccceeccccccccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEE
Confidence             3467788999999996 688999999999999999999999888   2445444444   4444          47888


Q ss_pred             CCCCceEEEeeccCCcc--eeeeEEcCCC-CeEEEecCCCeEEEE
Q 046394          208 SHNYNRYMGYSMVKGYQ--IGKVSFRPYE-DVLGIGHSMGVSGIL  249 (378)
Q Consensus       208 ~~~~~~~~~~~~~~~~~--v~~~~~sp~g-~~l~~~~~~g~~~~~  249 (378)
                      ..+++++..+.. +...  +..+.|.+.+ .+|++++.||.+.+|
T Consensus       280 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vw  323 (325)
T d1pgua1         280 VTTSKCVQKWTL-DKQQLGNQQVGVVATGNGRIISLSLDGTLNFY  323 (325)
T ss_dssp             TTTTEEEEEEEC-CTTCGGGCEEEEEEEETTEEEEEETTSCEEEE
T ss_pred             CCCCCEEEEEEe-cCCcccCeEEEEEECCCCEEEEEECCCEEEEE
Confidence            888888777765 4433  3334443332 245555555544333

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.93  E-value=8.7e-24  Score=182.64  Aligned_cols=167  Identities=10%  Similarity=0.079  Sum_probs=128.9

Q ss_pred             eeeEEEeccceeeeeecccceeeEEee-cCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCCCeE--------------E
Q 046394           16 EKTWRIKQEAIAREVDILSSRNQYDIM-LPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTEL--------------H   80 (378)
Q Consensus        16 ~~~~~~~~~~~i~~~d~~~~~~~~~l~-~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~--------------~   80 (378)
                      ...+..+.|+.|++||+.+++....+. .|...|.+++|+|+|.+ ++++.|+.+++|+..+...              .
T Consensus        25 ~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~-~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~  103 (299)
T d1nr0a2          25 KTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDL-FTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPL  103 (299)
T ss_dssp             SEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCE-EEEETTTEEEEECSSSSSSCTTSCCEEECSSCEE
T ss_pred             CEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeecccee-ecccceeeEEEeccCCcccccccccccccccccc
Confidence            445667788999999999999888774 68889999999999975 5566799999998422110              0


Q ss_pred             e--e--------------------------ccCCCeeEEEE-----EEEEEeCCCeEEEEEcCCCcEEE-EEecCCCCee
Q 046394           81 C--S--------------------------KEHGEVLKLQF-----LLASINKLGQLRYQNVTMGEIVG-NFWTGLGRTD  126 (378)
Q Consensus        81 ~--~--------------------------~~~~~~~~l~~-----~l~s~~~d~~i~iwd~~~~~~~~-~~~~~~~~v~  126 (378)
                      .  +                          .......+++|     ++++++.|+.|.+||+.+++... ....|...|.
T Consensus       104 ~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~  183 (299)
T d1nr0a2         104 GLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEIT  183 (299)
T ss_dssp             EEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            0  0                          00011244455     78889999999999998876543 3345778899


Q ss_pred             EEEEcCCCCEEEEEcCCCe-----------------eeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCce
Q 046394          127 VIRVNPFNGVVSLGHSGGT-----------------MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYE  183 (378)
Q Consensus       127 ~~~~s~~~~~l~~~~~d~~-----------------~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~  183 (378)
                      +++|+|++.+|++++.++.                 +.+|..+|++++|+|++.+|++|+.|+.|+|||+.++.
T Consensus       184 ~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~  257 (299)
T d1nr0a2         184 SVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPS  257 (299)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTT
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccceEEEcCCCEEEEEECCCCC
Confidence            9999999999999988886                 45688899999999999999999999999999987643

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=2.6e-24  Score=188.67  Aligned_cols=206  Identities=11%  Similarity=0.043  Sum_probs=161.5

Q ss_pred             CCceEEEEcCCCCEEEEEeCCC-cEEEEeC---CCCeEEeeccCC-C-eeEEEE-------EEEEEeCCCeEEEEEcCCC
Q 046394           46 LGPYTLDFTSSGRYMAAAGCKG-YPYFYNR---DGTELHCSKEHG-E-VLKLQF-------LLASINKLGQLRYQNVTMG  112 (378)
Q Consensus        46 ~~v~~~~~sp~g~~l~~~~~dg-~i~iwd~---~~~~~~~~~~~~-~-~~~l~~-------~l~s~~~d~~i~iwd~~~~  112 (378)
                      ..+++++|+|+|+.|++++.+. .|+.|+.   ....+..+.+|. . +++++|       +|++|+.||+|+|||+..+
T Consensus        18 ~~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~   97 (325)
T d1pgua1          18 NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFD   97 (325)
T ss_dssp             TCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEE
T ss_pred             CCeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCC
Confidence            3567899999999999887654 3566762   234567777875 3 499999       8999999999999998754


Q ss_pred             cE--------EEEEecCCCCeeEEEEcCCCCEEEEEcCCCe----------------eeecCCCEEEEEEecCCCE-EEE
Q 046394          113 EI--------VGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT----------------MLCHQGPVSALAFHPNGHL-MAT  167 (378)
Q Consensus       113 ~~--------~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~----------------~~~h~~~v~~~~~sp~g~~-l~t  167 (378)
                      ..        ...+..+.++|.+++|++++.++++++.+..                +.+|...|.+++|+|++.+ +++
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~  177 (325)
T d1pgua1          98 KESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMT  177 (325)
T ss_dssp             GGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEE
T ss_pred             cceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeecccccccccccccccceEEE
Confidence            31        2234567889999999999999888765432                5679999999999998765 778


Q ss_pred             EECCCeEEEEEcCCceeeeee------cCCceEEEEecCCC-----------ccccCCCCCceEEEeeccCCcceeeeEE
Q 046394          168 SGKDCKIKIWDLRKYEVLQTL------PGHAKTLDFSRKDS-----------GDFSGSHNYNRYMGYSMVKGYQIGKVSF  230 (378)
Q Consensus       168 ~~~d~~i~iwd~~~~~~~~~~------~~~i~~~~~sp~g~-----------~~~~~~~~~~~~~~~~~~~~~~v~~~~~  230 (378)
                      ++.|+.|++||+..++....+      ...|.+++|+|++.           ..+|+..+...+..+.+ |..++..+.|
T Consensus       178 ~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~-~~~~v~~~~~  256 (325)
T d1pgua1         178 VGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIED-DQEPVQGGIF  256 (325)
T ss_dssp             EETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCB-TTBCCCSCEE
T ss_pred             eecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeeccccccccccc-ccccccccee
Confidence            999999999999988776655      25689999999643           37788888888888877 7777877777


Q ss_pred             c---CCCCeEEEecCCCeEEEEEcC
Q 046394          231 R---PYEDVLGIGHSMGVSGILIPG  252 (378)
Q Consensus       231 s---p~g~~l~~~~~~g~~~~~~~~  252 (378)
                      +   |+|.+|++++.||.+.+|...
T Consensus       257 s~~~~dg~~l~s~s~D~~i~iwd~~  281 (325)
T d1pgua1         257 ALSWLDSQKFATVGADATIRVWDVT  281 (325)
T ss_dssp             EEEESSSSEEEEEETTSEEEEEETT
T ss_pred             eeeccCCCEEEEEeCCCeEEEEECC
Confidence            7   788888888888877777543

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.93  E-value=1.7e-23  Score=185.12  Aligned_cols=162  Identities=8%  Similarity=-0.065  Sum_probs=137.1

Q ss_pred             EEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCC--cEEEEeCCCCeEEeeccCCCe-eEEEE--
Q 046394           19 WRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKG--YPYFYNRDGTELHCSKEHGEV-LKLQF--   93 (378)
Q Consensus        19 ~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~-~~l~~--   93 (378)
                      +.....+.+.+||+.++.... + .|...|.+++|||||++|++++.+.  .|++||..+..+..+..|... .+++|  
T Consensus        18 ~a~~~~g~v~v~d~~~~~~~~-~-~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~~~~~~~v~~~~~sp   95 (360)
T d1k32a3          18 IAFVSRGQAFIQDVSGTYVLK-V-PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDR   95 (360)
T ss_dssp             EEEEETTEEEEECTTSSBEEE-C-SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECT
T ss_pred             EEEEECCeEEEEECCCCcEEE-c-cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEEeeCCCceEEeeeecc
Confidence            444567899999998887654 3 6889999999999999998776553  799999877777788778765 99999  


Q ss_pred             ---EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe-----------------------ee
Q 046394           94 ---LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT-----------------------ML  147 (378)
Q Consensus        94 ---~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~-----------------------~~  147 (378)
                         +|++++.++.+.+|++.+++....+..+...+.+++|+|+|++|+.+..+..                       +.
T Consensus        96 dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~  175 (360)
T d1k32a3          96 NGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAAT  175 (360)
T ss_dssp             TSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECS
T ss_pred             cccccceeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccCceeeec
Confidence               9999999999999999999999999889999999999999999987654332                       34


Q ss_pred             ecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCc
Q 046394          148 CHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKY  182 (378)
Q Consensus       148 ~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~  182 (378)
                      .|...+..++|+|+|++|++++.|+.+.+||....
T Consensus       176 ~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~  210 (360)
T d1k32a3         176 TENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVL  210 (360)
T ss_dssp             CSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSS
T ss_pred             ccccccccccccCCCCEEEEEeCCCceEccccccc
Confidence            56677889999999999999999999999997653

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=2e-24  Score=194.55  Aligned_cols=158  Identities=18%  Similarity=0.338  Sum_probs=125.6

Q ss_pred             CCceEEEEcCC-----CCEEEEEeCCCcEEEEeCCC------------Ce---E-E---eeccCCCe-eEEEE----EEE
Q 046394           46 LGPYTLDFTSS-----GRYMAAAGCKGYPYFYNRDG------------TE---L-H---CSKEHGEV-LKLQF----LLA   96 (378)
Q Consensus        46 ~~v~~~~~sp~-----g~~l~~~~~dg~i~iwd~~~------------~~---~-~---~~~~~~~~-~~l~~----~l~   96 (378)
                      ..+.+++|+++     +.++++++.||.|++|++..            ..   + .   ....+... .+++|    +|+
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~la  199 (393)
T d1sq9a_         120 HSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIA  199 (393)
T ss_dssp             SCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEE
T ss_pred             CceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCCEEE
Confidence            34567777765     35789999999999999421            00   0 1   11222333 78888    899


Q ss_pred             EEeCCCeEEEEEcCCCcEEEEEe------cCCCCeeEEEEcCCCCEEEEEcCCCe-------------------------
Q 046394           97 SINKLGQLRYQNVTMGEIVGNFW------TGLGRTDVIRVNPFNGVVSLGHSGGT-------------------------  145 (378)
Q Consensus        97 s~~~d~~i~iwd~~~~~~~~~~~------~~~~~v~~~~~s~~~~~l~~~~~d~~-------------------------  145 (378)
                      +|+.|++|++||+.+++++..+.      .|...|.+++|+|+|++|++|+.|+.                         
T Consensus       200 sgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~  279 (393)
T d1sq9a_         200 TGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSS  279 (393)
T ss_dssp             EECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC----
T ss_pred             EEeCCCcEEEEeecccccccccccccccccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccccccc
Confidence            99999999999999998876654      47789999999999999999998863                         


Q ss_pred             -----eeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee--c-CCc----eEEEEecCCCc
Q 046394          146 -----MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL--P-GHA----KTLDFSRKDSG  203 (378)
Q Consensus       146 -----~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~--~-~~i----~~~~~sp~g~~  203 (378)
                           +.+|.+.|++++|+|+|++|+|+|.|++|+|||+.+++++.++  | ..|    ..++|+|+|..
T Consensus       280 ~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~  349 (393)
T d1sq9a_         280 QASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDS  349 (393)
T ss_dssp             ----CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCB
T ss_pred             cceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEEEECCcCCcccCCccEEEECCCCCE
Confidence                 3479999999999999999999999999999999999999998  3 333    35778887764

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=4.5e-23  Score=185.52  Aligned_cols=211  Identities=13%  Similarity=0.100  Sum_probs=151.6

Q ss_pred             EEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCC-C------eEEeeccCCC-eeEEEE------------EEEEE
Q 046394           39 YDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDG-T------ELHCSKEHGE-VLKLQF------------LLASI   98 (378)
Q Consensus        39 ~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~-~------~~~~~~~~~~-~~~l~~------------~l~s~   98 (378)
                      ...++|...|+++++++  ++|++|+.|++|+|||... .      .......|.. ...+.+            +++++
T Consensus         8 ~~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~   85 (393)
T d1sq9a_           8 NAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATT   85 (393)
T ss_dssp             EESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEE
T ss_pred             ecCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEE
Confidence            44579999999999875  5999999999999999421 1      1222222322 122211            78899


Q ss_pred             eCCCeEEEEEcCCCcE---EE--EEe-----cCCCCeeEEEEcCCC-----CEEEEEcCCCe------------------
Q 046394           99 NKLGQLRYQNVTMGEI---VG--NFW-----TGLGRTDVIRVNPFN-----GVVSLGHSGGT------------------  145 (378)
Q Consensus        99 ~~d~~i~iwd~~~~~~---~~--~~~-----~~~~~v~~~~~s~~~-----~~l~~~~~d~~------------------  145 (378)
                      +.||.|++|++.....   ..  ...     .+...+..++|.+++     .++++++.|+.                  
T Consensus        86 ~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~  165 (393)
T d1sq9a_          86 SFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTL  165 (393)
T ss_dssp             ETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTT
T ss_pred             eCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeee
Confidence            9999999999865321   11  111     123456778887753     57888888876                  


Q ss_pred             --------------eeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee---------cCCceEEEEecCCC
Q 046394          146 --------------MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL---------PGHAKTLDFSRKDS  202 (378)
Q Consensus       146 --------------~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~---------~~~i~~~~~sp~g~  202 (378)
                                    ...+...+++++|+|++ +|++|+.|++|+|||+.+++++..+         ..+|++++|+|||.
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~  244 (393)
T d1sq9a_         166 NWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGS  244 (393)
T ss_dssp             CCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTT
T ss_pred             eeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccc
Confidence                          12344568899999998 8999999999999999999887665         25799999999988


Q ss_pred             c-------------cccCCCCCceEEEee-------------ccCCcceeeeEEcCCCCeEEEecCCCeEEEEEcCC
Q 046394          203 G-------------DFSGSHNYNRYMGYS-------------MVKGYQIGKVSFRPYEDVLGIGHSMGVSGILIPGS  253 (378)
Q Consensus       203 ~-------------~~~~~~~~~~~~~~~-------------~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~~~s  253 (378)
                      +             .+|+......+..+.             + |...|++++|+|+|++|++|+.|+.+.+|...+
T Consensus       245 ~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~g-H~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~  320 (393)
T d1sq9a_         245 LLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFA-HSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKT  320 (393)
T ss_dssp             EEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBS-BSSCEEEEEECSSSSEEEEEETTSEEEEEETTT
T ss_pred             eeeeecCCCCcceeeecccccceeeeeeccccccccceeeeec-ccCceeeeccCCCCCeeEEECCCCEEEEEECCC
Confidence            5             456665555554443             4 888899999999998888888887766665433

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=8.3e-23  Score=179.59  Aligned_cols=106  Identities=13%  Similarity=0.009  Sum_probs=87.1

Q ss_pred             eEEeecCCCCc-eEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeeccCCCe-eEEEE----EEEEEeCCCeEEEEEcC
Q 046394           38 QYDIMLPELGP-YTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKEHGEV-LKLQF----LLASINKLGQLRYQNVT  110 (378)
Q Consensus        38 ~~~l~~~~~~v-~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~-~~l~~----~l~s~~~d~~i~iwd~~  110 (378)
                      ..+|.+|...| +|++  +++++||+|+.||.|+||| .++..+..+.+|.+. .+++|    +|++|+.|++|++|++.
T Consensus         5 ~~tL~GH~~~vitc~~--~~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~~~l~s~s~D~~i~iw~~~   82 (355)
T d1nexb2           5 RTTLRGHMTSVITCLQ--FEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIK   82 (355)
T ss_dssp             EEEEECCSSSCEEEEE--EETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETTTEEEEEETTCCEEEEETT
T ss_pred             cEEECCcCCCcEEEEE--ECCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCCCEEEEEeccccccccccc
Confidence            46799998886 4554  5688999999999999999 577888999999886 99999    99999999999999999


Q ss_pred             CCcEEEEEecCCCC--eeEEEEcCCCCEEEEEcCCCe
Q 046394          111 MGEIVGNFWTGLGR--TDVIRVNPFNGVVSLGHSGGT  145 (378)
Q Consensus       111 ~~~~~~~~~~~~~~--v~~~~~s~~~~~l~~~~~d~~  145 (378)
                      ..............  .....+++++.++++++.|+.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  119 (355)
T d1nexb2          83 KGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNT  119 (355)
T ss_dssp             TTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSE
T ss_pred             ccccccccccccccccccccccccccceeeeecCCCc
Confidence            88877666544333  345667788888888888876

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=4.7e-22  Score=169.87  Aligned_cols=204  Identities=14%  Similarity=0.137  Sum_probs=155.2

Q ss_pred             eeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeeccCCCe-eEEEE---EEEEEeCCCeEEEEEcCC
Q 046394           37 NQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKEHGEV-LKLQF---LLASINKLGQLRYQNVTM  111 (378)
Q Consensus        37 ~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~-~~l~~---~l~s~~~d~~i~iwd~~~  111 (378)
                      ++.....|..+|+|++  +||++||+|+.||.|+||| .++.++..+.+|.+. ++++|   +|++|+.|+.|++|++..
T Consensus         7 ~i~~~~~~~~~V~c~~--~d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~~~~~l~s~s~D~~i~~~~~~~   84 (293)
T d1p22a2           7 RIHCRSETSKGVYCLQ--YDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNT   84 (293)
T ss_dssp             CEECCCSSCCCEEEEE--CCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEESSS
T ss_pred             EEeccCCCCCCEEEEE--EcCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeecccceeeccccccccccccccc
Confidence            3445567778899875  5789999999999999999 568889999999876 99999   999999999999999999


Q ss_pred             CcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe-----------------eeecCCCEEEEEEecCCCEEEEEECCCeE
Q 046394          112 GEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT-----------------MLCHQGPVSALAFHPNGHLMATSGKDCKI  174 (378)
Q Consensus       112 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~-----------------~~~h~~~v~~~~~sp~g~~l~t~~~d~~i  174 (378)
                      +...........  ....+.+....++++..++.                 +..|...|..+.+.+  ..+++++.|+.|
T Consensus        85 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~s~d~~i  160 (293)
T d1p22a2          85 GEMLNTLIHHCE--AVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSASGDRTI  160 (293)
T ss_dssp             CCEEEEECCCCS--CEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEET--TEEEEEETTSEE
T ss_pred             cccccccccccc--ccccccccccceeecccccceeEeeccccccccccccccccccccccceecc--cccccccCCCce
Confidence            887776654333  33445556666666666665                 456777787777654  478899999999


Q ss_pred             EEEEcCCceeeeee---cCCceEEEEec--------CCCccccCCCCCceEEEeeccCCcceeeeEEcCCCCeEEEecCC
Q 046394          175 KIWDLRKYEVLQTL---PGHAKTLDFSR--------KDSGDFSGSHNYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSM  243 (378)
Q Consensus       175 ~iwd~~~~~~~~~~---~~~i~~~~~sp--------~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~  243 (378)
                      ++||+++++++..+   ...+..+.+++        ||...+|+......+..+.+ +...+..  +++++.+|++|+.|
T Consensus       161 ~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~v~~--~~~~~~~l~sg~~d  237 (293)
T d1p22a2         161 KVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEG-HEELVRC--IRFDNKRIVSGAYD  237 (293)
T ss_dssp             EEEETTTCCEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECC-CSSCEEE--EECCSSEEEEEETT
T ss_pred             eeecCCCCcEEEEEcccccccccccCCCCeEEEecCCCEEEEEecccceeeeeecc-cceeeee--ccccceEEEEEcCC
Confidence            99999999888877   24444544433        56678888888888877776 6666654  56677788888888


Q ss_pred             CeEEEE
Q 046394          244 GVSGIL  249 (378)
Q Consensus       244 g~~~~~  249 (378)
                      |.+.+|
T Consensus       238 g~i~iw  243 (293)
T d1p22a2         238 GKIKVW  243 (293)
T ss_dssp             SCEEEE
T ss_pred             CEEEEE
Confidence            866655

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=8.7e-22  Score=172.04  Aligned_cols=217  Identities=12%  Similarity=0.063  Sum_probs=155.5

Q ss_pred             eecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeeccCCCe-eEEEE---EEEEEeCCCeE
Q 046394           30 VDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKEHGEV-LKLQF---LLASINKLGQL  104 (378)
Q Consensus        30 ~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~-~~l~~---~l~s~~~d~~i  104 (378)
                      |+..+.+....|++|.+.|.+ +++++|++||||+.||.|+||| .+++++..+.+|.+. .+++|   +|++++.|+.+
T Consensus         1 W~~~~~~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~~l~s~s~D~~~   79 (342)
T d2ovrb2           1 WRRGELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTL   79 (342)
T ss_dssp             HHHSCCCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETTEEEEEETTSCE
T ss_pred             CCCCCCCcCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCCccccceecccc
Confidence            566677888899999999875 4677899999999999999999 578889999999876 99999   99999999999


Q ss_pred             EEEEcCCCcEEEEEecCCCCeeE--------------------------------------EEEcCCCCEEEEEcCCCe-
Q 046394          105 RYQNVTMGEIVGNFWTGLGRTDV--------------------------------------IRVNPFNGVVSLGHSGGT-  145 (378)
Q Consensus       105 ~iwd~~~~~~~~~~~~~~~~v~~--------------------------------------~~~s~~~~~l~~~~~d~~-  145 (378)
                      ++|+............+...+..                                      ..+.+....+++++.++. 
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i  159 (342)
T d2ovrb2          80 KVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMV  159 (342)
T ss_dssp             EEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCE
T ss_pred             cccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeE
Confidence            99998766554443322222221                                      122233344555555554 


Q ss_pred             -------------eeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee---cCCceEEEEec--------CC
Q 046394          146 -------------MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL---PGHAKTLDFSR--------KD  201 (378)
Q Consensus       146 -------------~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~~sp--------~g  201 (378)
                                   +.+|...+.  .+++++.+|++++.||.|++||++.++++..+   ...+.++++++        ||
T Consensus       160 ~~~d~~~~~~~~~~~~~~~~~~--~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~s~d~  237 (342)
T d2ovrb2         160 KVWDPETETCLHTLQGHTNRVY--SLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADS  237 (342)
T ss_dssp             EEEEGGGTEEEEEECCCSSCEE--EEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEETTEEEEEETTS
T ss_pred             EEeecccceeeEEEcCcccccc--cccCCCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecCCCEEEEEcCCC
Confidence                         344555544  45567889999999999999999999998888   35667776665        45


Q ss_pred             CccccCCCCCceEEEeecc--CCcceeeeEEcCCCCeEEEecCCCeEEEEEc
Q 046394          202 SGDFSGSHNYNRYMGYSMV--KGYQIGKVSFRPYEDVLGIGHSMGVSGILIP  251 (378)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~~  251 (378)
                      ...+|+.........+...  |...+.++.|  ++.++++|+.||.+.+|..
T Consensus       238 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~s~s~Dg~i~iwd~  287 (342)
T d2ovrb2         238 TVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF--NKNFVITSSDDGTVKLWDL  287 (342)
T ss_dssp             CEEEEETTTCCEEEEECSTTSCSSCEEEEEE--CSSEEEEEETTSEEEEEET
T ss_pred             EEEEEecccccccccccccceeeeceeeccc--CCCeeEEEcCCCEEEEEEC
Confidence            5677877776666555441  3445555555  4557777777776655543

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=5.4e-22  Score=170.24  Aligned_cols=216  Identities=10%  Similarity=-0.002  Sum_probs=157.9

Q ss_pred             eEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEeeccCCCeeEEEE----
Q 046394           18 TWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTELHCSKEHGEVLKLQF----   93 (378)
Q Consensus        18 ~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~l~~----   93 (378)
                      .+..+.|+.|++||+.++.     ..|...|.++++++++ .+++++.|++|++|+....     .....+..+.+    
T Consensus        24 l~sgs~Dg~v~~Wd~~~~~-----~~h~~~V~~~~~~~~~-~~~s~s~D~~v~~w~~~~~-----~~~~~~~~~~~~~~~   92 (287)
T d1pgua2          24 LISGSYDGRIMEWSSSSMH-----QDHSNLIVSLDNSKAQ-EYSSISWDDTLKVNGITKH-----EFGSQPKVASANNDG   92 (287)
T ss_dssp             TEEEETTSCEEETTTTEEE-----CCCCSCEEEEECCSTT-CCEEEETTTEEEETTEEEE-----ECSSCEEEEEECSSS
T ss_pred             EEEEeCCCeEEEEECCCCC-----CCCCCCEEEEEecCCC-eEEEEeecccccccccccc-----ccccceeeeeeccCC
Confidence            6777888889999887653     4788889999988765 5788888999999984221     11122344455    


Q ss_pred             EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe----------------eeecCCCEEEEE
Q 046394           94 LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT----------------MLCHQGPVSALA  157 (378)
Q Consensus        94 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~----------------~~~h~~~v~~~~  157 (378)
                      .++..+.++.+.+|+..++..+..+...   ....+++|++..+++++.++.                ...|.+.+++++
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~  169 (287)
T d1pgua2          93 FTAVLTNDDDLLILQSFTGDIIKSVRLN---SPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYIS  169 (287)
T ss_dssp             EEEEEETTSEEEEEETTTCCEEEEEECS---SCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEE
T ss_pred             ceEEEeecccceeeeccceeeeeecccc---ceeeeeeccCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEE
Confidence            4444556677889998888888777643   234567888888888887764                234778899999


Q ss_pred             EecCCCEEEEEECCCeEEEEEcCCceeeeee---c-CCceEEEEecCCC--------------------ccccCCCC-Cc
Q 046394          158 FHPNGHLMATSGKDCKIKIWDLRKYEVLQTL---P-GHAKTLDFSRKDS--------------------GDFSGSHN-YN  212 (378)
Q Consensus       158 ~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~---~-~~i~~~~~sp~g~--------------------~~~~~~~~-~~  212 (378)
                      |+|++.+|++++.||.|++||+.++......   | ..+.+++|+|++.                    ..+|+... ..
T Consensus       170 ~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~  249 (287)
T d1pgua2         170 ISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMK  249 (287)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTC
T ss_pred             eccCccccccccccccccceeecccccccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCe
Confidence            9999999999999999999999998876543   3 6799999998653                    35777654 44


Q ss_pred             eEEEeeccCCcceeeeEEcCCCCeEEEecCCCeEEEE
Q 046394          213 RYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGIL  249 (378)
Q Consensus       213 ~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~  249 (378)
                      .+..+.+ |...|+++.|+|++ .|++++.||.+.+|
T Consensus       250 ~~~~~~~-h~~~V~~v~~~~~~-~l~s~g~D~~v~iW  284 (287)
T d1pgua2         250 IIKALNA-HKDGVNNLLWETPS-TLVSSGADACIKRW  284 (287)
T ss_dssp             CEEETTS-STTCEEEEEEEETT-EEEEEETTSCEEEE
T ss_pred             EEEEeCC-CCCCeEEEEECCCC-EEEEEECCCeEEEE
Confidence            5555566 88999999999987 35555555544444

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.2e-20  Score=160.86  Aligned_cols=226  Identities=12%  Similarity=0.100  Sum_probs=163.4

Q ss_pred             ceeeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCC-CCeEEeeccCCCe-eEEE
Q 046394           15 VEKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRD-GTELHCSKEHGEV-LKLQ   92 (378)
Q Consensus        15 ~~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~-~~l~   92 (378)
                      ....+..+.|+.|++||+.+++.+..+.+|...|++++|  ++++|++|+.||.|++|+.. +........+... ....
T Consensus        25 ~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~~~~~  102 (293)
T d1p22a2          25 DQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLR  102 (293)
T ss_dssp             SSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEE
T ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeeccccccccccccccccccccccccccccccccc
Confidence            456788889999999999999999999999999999887  57799999999999999954 4444444444333 2222


Q ss_pred             E---EEEEEeCCCeEEEEEcCCCc---EEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe--------------eeecCCC
Q 046394           93 F---LLASINKLGQLRYQNVTMGE---IVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT--------------MLCHQGP  152 (378)
Q Consensus        93 ~---~l~s~~~d~~i~iwd~~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~--------------~~~h~~~  152 (378)
                      .   .++++..++.+.+||+.+..   ....+..+...+.++.+.+  ..+++++.|+.              +.+|...
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~  180 (293)
T d1p22a2         103 FNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSASGDRTIKVWNTSTCEFVRTLNGHKRG  180 (293)
T ss_dssp             CCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEET--TEEEEEETTSEEEEEETTTCCEEEEEECCSSC
T ss_pred             ccccceeecccccceeEeeccccccccccccccccccccccceecc--cccccccCCCceeeecCCCCcEEEEEcccccc
Confidence            2   88999999999999998754   3444556667776666654  56677777776              5567777


Q ss_pred             EEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee--c-CCceEE--------EEecCCCccccCC---------CCCc
Q 046394          153 VSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL--P-GHAKTL--------DFSRKDSGDFSGS---------HNYN  212 (378)
Q Consensus       153 v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~--~-~~i~~~--------~~sp~g~~~~~~~---------~~~~  212 (378)
                      |..+.++  +.++++++.|++|++||+++...+..+  + ..+..+        +-+.||...+|+.         ....
T Consensus       181 v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~  258 (293)
T d1p22a2         181 IACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTL  258 (293)
T ss_dssp             EEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTT
T ss_pred             cccccCC--CCeEEEecCCCEEEEEecccceeeeeecccceeeeeccccceEEEEEcCCCEEEEEECCCCccccccCCce
Confidence            7777665  568999999999999999999888777  2 223222        2234555566642         2234


Q ss_pred             eEEEeeccCCcceeeeEEcCCCCeEEEecCCCeEEEE
Q 046394          213 RYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGIL  249 (378)
Q Consensus       213 ~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~  249 (378)
                      ++..+.+ |..+|++++|+  +.+|++|+.||.+.+|
T Consensus       259 ~~~~~~~-H~~~V~~v~~d--~~~l~s~s~Dg~i~iW  292 (293)
T d1p22a2         259 CLRTLVE-HSGRVFRLQFD--EFQIVSSSHDDTILIW  292 (293)
T ss_dssp             EEEEECC-CSSCCCCEEEC--SSCEEECCSSSEEEEE
T ss_pred             eeEEecC-CCCCEEEEEEc--CCEEEEEecCCEEEEe
Confidence            5666777 88899999995  4456655555544443

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=1.7e-21  Score=169.81  Aligned_cols=214  Identities=10%  Similarity=-0.001  Sum_probs=149.5

Q ss_pred             eeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCC-CC---eEEeeccCCCe-eEEEE------EEEEEeCCCeE
Q 046394           36 RNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRD-GT---ELHCSKEHGEV-LKLQF------LLASINKLGQL  104 (378)
Q Consensus        36 ~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~-~~---~~~~~~~~~~~-~~l~~------~l~s~~~d~~i  104 (378)
                      +.+..+.+|...|++|+|+|++++||+|+.||+|+|||.. +.   .+....+|... .+++|      +|++|+.|+.|
T Consensus         2 ~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v   81 (342)
T d1yfqa_           2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEI   81 (342)
T ss_dssp             EEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCE
T ss_pred             CeEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccce
Confidence            4456678899999999999999999999999999999942 22   22333467765 99999      89999999999


Q ss_pred             EEEEcCCCcEEEEEecCCCC-eeEEEEcCCCCEEEEEcCCCe------------------ee--ecCCCEEEEEEecCCC
Q 046394          105 RYQNVTMGEIVGNFWTGLGR-TDVIRVNPFNGVVSLGHSGGT------------------ML--CHQGPVSALAFHPNGH  163 (378)
Q Consensus       105 ~iwd~~~~~~~~~~~~~~~~-v~~~~~s~~~~~l~~~~~d~~------------------~~--~h~~~v~~~~~sp~g~  163 (378)
                      ++|++..+........+... .....+.++...+++++.++.                  ..  .+......+.+.+.+.
T Consensus        82 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (342)
T d1yfqa_          82 LKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSS  161 (342)
T ss_dssp             EEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSS
T ss_pred             eeeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCC
Confidence            99999988777666655444 445566778889999988887                  01  1122345667788899


Q ss_pred             EEEEEECCCeEEEEEcCCceeeeee------cCCceEEEE-----------ecCCCccccCCCC---------CceEEE-
Q 046394          164 LMATSGKDCKIKIWDLRKYEVLQTL------PGHAKTLDF-----------SRKDSGDFSGSHN---------YNRYMG-  216 (378)
Q Consensus       164 ~l~t~~~d~~i~iwd~~~~~~~~~~------~~~i~~~~~-----------sp~g~~~~~~~~~---------~~~~~~-  216 (378)
                      .+++++.|+.|++||+.........      .....+..+           +.+|...+|....         ...... 
T Consensus       162 ~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~  241 (342)
T d1yfqa_         162 RLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCH  241 (342)
T ss_dssp             EEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECC
T ss_pred             ceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeee
Confidence            9999999999999999876543322      122333333           3344433332111         111111 


Q ss_pred             -----eeccCCcceeeeEEcCCCCeEEEecCCCeEEEEE
Q 046394          217 -----YSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILI  250 (378)
Q Consensus       217 -----~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~  250 (378)
                           ... |...|++++|+|++.+||+|+.||.+.+|.
T Consensus       242 ~~~~~~~~-~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD  279 (342)
T d1yfqa_         242 RLNLKDTN-LAYPVNSIEFSPRHKFLYTAGSDGIISCWN  279 (342)
T ss_dssp             CCCTTCCS-SCCCEEEEEECTTTCCEEEEETTSCEEEEE
T ss_pred             eeccCCCc-ccccceeEEecCCccEEEEECCCCEEEEEE
Confidence                 112 556789999999998888888877665554

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=1.9e-22  Score=173.16  Aligned_cols=210  Identities=13%  Similarity=0.118  Sum_probs=157.7

Q ss_pred             ceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEeeccCCCe-eEEEE----EEEEEeCCCeEEEEEc
Q 046394           35 SRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTELHCSKEHGEV-LKLQF----LLASINKLGQLRYQNV  109 (378)
Q Consensus        35 ~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~l~~----~l~s~~~d~~i~iwd~  109 (378)
                      .+.+..|.+|..+|++++|+|    |++|+.||+|++||...    ...+|... .++.|    .+++++.|++|++|++
T Consensus         3 ~~~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~----~~~~h~~~V~~~~~~~~~~~~s~s~D~~v~~w~~   74 (287)
T d1pgua2           3 DEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSS----MHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGI   74 (287)
T ss_dssp             EEEEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTE----EECCCCSCEEEEECCSTTCCEEEETTTEEEETTE
T ss_pred             cceeEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCC----CCCCCCCCEEEEEecCCCeEEEEeeccccccccc
Confidence            467889999999999999997    99999999999999643    23567765 88888    8899999999999997


Q ss_pred             CCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe------------eeecCCCEEEEEEecCCCEEEEEECCC-eEEE
Q 046394          110 TMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT------------MLCHQGPVSALAFHPNGHLMATSGKDC-KIKI  176 (378)
Q Consensus       110 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~------------~~~h~~~v~~~~~sp~g~~l~t~~~d~-~i~i  176 (378)
                      ...       .....+.++.+++++..+++++.++.            ...+..  ...+++|++..+++++.|+ .|++
T Consensus        75 ~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~v~~  145 (287)
T d1pgua2          75 TKH-------EFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNS--PGSAVSLSQNYVAVGLEEGNTIQV  145 (287)
T ss_dssp             EEE-------ECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSS--CEEEEEECSSEEEEEETTTSCEEE
T ss_pred             ccc-------ccccceeeeeeccCCceEEEeecccceeeeccceeeeeeccccc--eeeeeeccCcceeeeccccceeee
Confidence            532       12356778888998888888777665            112222  2356778888888888775 7999


Q ss_pred             EEcCCceeeeee----cCCceEEEEecCCCc----------cccCCCCCceEE-EeeccCCcceeeeEEcCCCCeEEEec
Q 046394          177 WDLRKYEVLQTL----PGHAKTLDFSRKDSG----------DFSGSHNYNRYM-GYSMVKGYQIGKVSFRPYEDVLGIGH  241 (378)
Q Consensus       177 wd~~~~~~~~~~----~~~i~~~~~sp~g~~----------~~~~~~~~~~~~-~~~~~~~~~v~~~~~sp~g~~l~~~~  241 (378)
                      |++........+    ...+++++|+|+|.+          .+|+........ .+.+ |..+|++++|+|.+.......
T Consensus       146 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~-h~~~v~~~~~~p~~~~~~~~~  224 (287)
T d1pgua2         146 FKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAF-RTSKINAISWKPAEKGANEEE  224 (287)
T ss_dssp             EETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCC-CSSCEEEEEECCCC------C
T ss_pred             eeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeecccccccccccc-cccccceeeeccccccccccc
Confidence            999877665555    367999999999875          556665555433 2445 888999999999998888877


Q ss_pred             CCCeEEEEEcCCCCcccccccCC
Q 046394          242 SMGVSGILIPGSGEPNFDSWVAN  264 (378)
Q Consensus       242 ~~g~~~~~~~~s~d~~i~~w~~~  264 (378)
                      .++  .++++|+.|+++++|++.
T Consensus       225 ~~~--~~l~sgs~D~~i~iw~~~  245 (287)
T d1pgua2         225 IEE--DLVATGSLDTNIFIYSVK  245 (287)
T ss_dssp             CSC--CEEEEEETTSCEEEEESS
T ss_pred             CCC--CeeEeecCCCeEEEEECC
Confidence            777  678899999999999863

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.88  E-value=1.1e-19  Score=156.13  Aligned_cols=224  Identities=10%  Similarity=0.096  Sum_probs=172.1

Q ss_pred             eccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEE-EEeCCCcEEEEe-CCCCeEEeeccCCCeeEEEE------
Q 046394           22 KQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMA-AAGCKGYPYFYN-RDGTELHCSKEHGEVLKLQF------   93 (378)
Q Consensus        22 ~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~-~~~~dg~i~iwd-~~~~~~~~~~~~~~~~~l~~------   93 (378)
                      ..++.|.+||+.+++.+..+... ..+.+++|+|||++|+ +++.++.|.+|| .++..+..+..+..+..+.|      
T Consensus         9 ~~~~~v~v~D~~t~~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~~~~~~~~~~~~~   87 (301)
T d1l0qa2           9 SESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQ   87 (301)
T ss_dssp             TTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSE
T ss_pred             CCCCEEEEEECCCCeEEEEEECC-CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeecccccccccccccccc
Confidence            45788999999999999888875 5688999999999875 556789999999 46777788888888888888      


Q ss_pred             EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcC-CCe-------------eeecCCCEEEEEEe
Q 046394           94 LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHS-GGT-------------MLCHQGPVSALAFH  159 (378)
Q Consensus        94 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d~~-------------~~~h~~~v~~~~~s  159 (378)
                      .++++..++.+.+|+..+++....+..+ ..+.+++|+|++..+++++. +..             ...+...+..++++
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (301)
T d1l0qa2          88 VYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVT  166 (301)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEEC
T ss_pred             ccccccccceeeecccccceeeeecccc-ccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccCCCceEEEee
Confidence            6677788899999999999988887644 56789999999987765554 443             23455668899999


Q ss_pred             cCCCEEEEEECC-CeEEEEEcCCceeeeee--cCCceEEEEecCCCc-------------cccCCCCCceEEEeeccCCc
Q 046394          160 PNGHLMATSGKD-CKIKIWDLRKYEVLQTL--PGHAKTLDFSRKDSG-------------DFSGSHNYNRYMGYSMVKGY  223 (378)
Q Consensus       160 p~g~~l~t~~~d-~~i~iwd~~~~~~~~~~--~~~i~~~~~sp~g~~-------------~~~~~~~~~~~~~~~~~~~~  223 (378)
                      |++..+++++.+ +.+.+|+.........+  ...+..++|+++|..             .+|+..+...+..+..  +.
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~--~~  244 (301)
T d1l0qa2         167 PDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPV--GP  244 (301)
T ss_dssp             TTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEEC--CS
T ss_pred             ccccceeeecccccccccccccceeeeecccccCCcceeeccccccccccccccceeeeeeeeecCCCeEEEEEcC--CC
Confidence            999988877755 67888888887777666  566788889988874             4455566666555543  45


Q ss_pred             ceeeeEEcCCCCeE-EEecCCCeEEEE
Q 046394          224 QIGKVSFRPYEDVL-GIGHSMGVSGIL  249 (378)
Q Consensus       224 ~v~~~~~sp~g~~l-~~~~~~g~~~~~  249 (378)
                      .+.+++|+|||++| +++..++.+.+|
T Consensus       245 ~~~~va~spdg~~l~va~~~~~~i~v~  271 (301)
T d1l0qa2         245 DPAGIAVTPDGKKVYVALSFCNTVSVI  271 (301)
T ss_dssp             SEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             CEEEEEEeCCCCEEEEEECCCCeEEEE
Confidence            68999999999865 344445544444

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.86  E-value=1.3e-20  Score=164.24  Aligned_cols=131  Identities=5%  Similarity=-0.052  Sum_probs=84.7

Q ss_pred             ceeeEEEeccceeeeeecccceeeE---EeecCCCCceEEEEcCCC-CEEEEEeCCCcEEEEeC-CCCeEEeeccCCCe-
Q 046394           15 VEKTWRIKQEAIAREVDILSSRNQY---DIMLPELGPYTLDFTSSG-RYMAAAGCKGYPYFYNR-DGTELHCSKEHGEV-   88 (378)
Q Consensus        15 ~~~~~~~~~~~~i~~~d~~~~~~~~---~l~~~~~~v~~~~~sp~g-~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~-   88 (378)
                      ....+..+.|+.|++||+.++....   ....|...|.+++|+|++ .+|++|+.||.|++|+. .+........+... 
T Consensus        23 ~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~~  102 (342)
T d1yfqa_          23 KSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANL  102 (342)
T ss_dssp             GTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCS
T ss_pred             CCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeeccccccccccccccccc
Confidence            3456667789999999997765433   334699999999999875 58999999999999994 34444444444332 


Q ss_pred             -eEEEE-----EEEEEeCCCeEEEEEcCCCcE----EEEEecC--CCCeeEEEEcCCCCEEEEEcCCCe
Q 046394           89 -LKLQF-----LLASINKLGQLRYQNVTMGEI----VGNFWTG--LGRTDVIRVNPFNGVVSLGHSGGT  145 (378)
Q Consensus        89 -~~l~~-----~l~s~~~d~~i~iwd~~~~~~----~~~~~~~--~~~v~~~~~s~~~~~l~~~~~d~~  145 (378)
                       ....+     .+++++.|+++++||++++..    ......+  ......+.+.+.+..+++++.++.
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  171 (342)
T d1yfqa_         103 GICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQ  171 (342)
T ss_dssp             CEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTE
T ss_pred             ccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCceeeecCCCc
Confidence             22222     899999999999999864321    1111111  122334444555555555555554

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.84  E-value=1.2e-18  Score=157.88  Aligned_cols=242  Identities=11%  Similarity=-0.030  Sum_probs=169.8

Q ss_pred             eEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCC-CCeE--EeeccCCCe----eE
Q 046394           18 TWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRD-GTEL--HCSKEHGEV----LK   90 (378)
Q Consensus        18 ~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~-~~~~--~~~~~~~~~----~~   90 (378)
                      .+....++.|++||+.+++.+..+..| ..+.+++|||||++|++++.||.|++||.. +...  ..+....+.    .+
T Consensus        35 ~V~~~~dg~v~vwD~~t~~~~~~l~~g-~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s  113 (426)
T d1hzua2          35 SVTLRDAGQIALVDGDSKKIVKVIDTG-YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESS  113 (426)
T ss_dssp             EEEETTTTEEEEEETTTCSEEEEEECC-SSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEEC
T ss_pred             EEEEcCCCEEEEEECCCCcEEEEEeCC-CCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEe
Confidence            345567899999999999999999987 579999999999999999999999999954 4433  233333332    33


Q ss_pred             EEE------EEEEEeCCCeEEEEEcCCCcEEEEEecCC-----------CCeeEEEEcCCCCEEEEEcCCCe--------
Q 046394           91 LQF------LLASINKLGQLRYQNVTMGEIVGNFWTGL-----------GRTDVIRVNPFNGVVSLGHSGGT--------  145 (378)
Q Consensus        91 l~~------~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-----------~~v~~~~~s~~~~~l~~~~~d~~--------  145 (378)
                      +.|      +++++..++.+.+||..++.++..+..+.           +....+.+++++..++....+..        
T Consensus       114 ~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~  193 (426)
T d1hzua2         114 KFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYK  193 (426)
T ss_dssp             CSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECS
T ss_pred             eeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEec
Confidence            333      45677789999999999998887766543           33456677777776665544332        


Q ss_pred             --------eeecCCCEEEEEEecCCCEEEEEE-CCCeEEEEEcCCceeeeee-----cCC-------------ceEEEEe
Q 046394          146 --------MLCHQGPVSALAFHPNGHLMATSG-KDCKIKIWDLRKYEVLQTL-----PGH-------------AKTLDFS  198 (378)
Q Consensus       146 --------~~~h~~~v~~~~~sp~g~~l~t~~-~d~~i~iwd~~~~~~~~~~-----~~~-------------i~~~~~s  198 (378)
                              ...+...+..+.|+|++++++++. .+..+.+||..+++.+..+     ...             +....++
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (426)
T d1hzua2         194 DIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHL  273 (426)
T ss_dssp             SSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECT
T ss_pred             cccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccC
Confidence                    335677788999999999877766 5568999999998887665     111             2222333


Q ss_pred             cCCCccccC-------CCCCceEEEeeccCCcceeeeEEcCCCCeEEEecCCCeEEEEEcCCCCcccccccCCCc
Q 046394          199 RKDSGDFSG-------SHNYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILIPGSGEPNFDSWVANPF  266 (378)
Q Consensus       199 p~g~~~~~~-------~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~~~s~d~~i~~w~~~~~  266 (378)
                      +++...+++       .........+.+ |+..+..++|+|||.+|++...-+     .+++.++++++|++...
T Consensus       274 ~d~~v~~~~~~~~~~~~~~~~~~~~l~g-~~~~v~~v~~sPdg~~l~v~~~~~-----~s~~~~~tv~vwd~~t~  342 (426)
T d1hzua2         274 GDGSISLIGTDPKNHPQYAWKKVAELQG-QGGGSLFIKTHPKSSHLYVDTTFN-----PDARISQSVAVFDLKNL  342 (426)
T ss_dssp             TTCEEEEEECCTTTCTTTBTSEEEEEEC-SSSCCCCEECCTTCSEEEECCTTC-----SSHHHHTCEEEEETTCT
T ss_pred             CCceEEEeeccccccccccceEeEEEec-CCCceeEEEcCCCCceEEEeecCC-----CCcccCCEEEEEECCCC
Confidence            444433332       233456677777 888899999999999888643211     13344667777876543

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.82  E-value=1.3e-17  Score=151.06  Aligned_cols=170  Identities=11%  Similarity=0.002  Sum_probs=130.7

Q ss_pred             eEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCC-CC--eEEeecc---CCCe-eE
Q 046394           18 TWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRD-GT--ELHCSKE---HGEV-LK   90 (378)
Q Consensus        18 ~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~-~~--~~~~~~~---~~~~-~~   90 (378)
                      .+..+.++.+.+||..+++.+..+..| ..|..++|||||++|++++.||.|.+||.. +.  ....+..   |.+. .+
T Consensus        35 ~v~~~d~g~v~v~D~~t~~v~~~~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s  113 (432)
T d1qksa2          35 SVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETS  113 (432)
T ss_dssp             EEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEEC
T ss_pred             EEEEcCCCEEEEEECCCCcEEEEEeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEe
Confidence            367788999999999999999999987 579999999999999999999999999953 33  2333332   2222 33


Q ss_pred             EEE------EEEEEeCCCeEEEEEcCCCcEEEEEecC-----------CCCeeEEEEcCCCCEEEEE-cCCCe-------
Q 046394           91 LQF------LLASINKLGQLRYQNVTMGEIVGNFWTG-----------LGRTDVIRVNPFNGVVSLG-HSGGT-------  145 (378)
Q Consensus        91 l~~------~l~s~~~d~~i~iwd~~~~~~~~~~~~~-----------~~~v~~~~~s~~~~~l~~~-~~d~~-------  145 (378)
                      ..|      ++++++.+++|.+||..+++++..+..+           ......+.++|++..++++ ..++.       
T Consensus       114 ~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~  193 (432)
T d1qksa2         114 KMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYT  193 (432)
T ss_dssp             CSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETT
T ss_pred             cccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEcc
Confidence            333      5688889999999999999998877643           2445678899999876554 34443       


Q ss_pred             --------eeecCCCEEEEEEecCCCEEEEEEC-CCeEEEEEcCCceeeeee
Q 046394          146 --------MLCHQGPVSALAFHPNGHLMATSGK-DCKIKIWDLRKYEVLQTL  188 (378)
Q Consensus       146 --------~~~h~~~v~~~~~sp~g~~l~t~~~-d~~i~iwd~~~~~~~~~~  188 (378)
                              ...+...+.+++|+|+|+++++++. ++.+.++|..+++.+..+
T Consensus       194 ~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~  245 (432)
T d1qksa2         194 DLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIE  245 (432)
T ss_dssp             CSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEE
T ss_pred             CCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEEe
Confidence                    1234567889999999998777765 558999999998887665

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.79  E-value=4.5e-17  Score=141.76  Aligned_cols=185  Identities=10%  Similarity=-0.027  Sum_probs=133.9

Q ss_pred             eeeEEEeccceeeeeecccceeeEEeecCC--CCceEEEEcCCCCEEE-EEeCCCcEEEEe-CCCCeEEeeccCCCe---
Q 046394           16 EKTWRIKQEAIAREVDILSSRNQYDIMLPE--LGPYTLDFTSSGRYMA-AAGCKGYPYFYN-RDGTELHCSKEHGEV---   88 (378)
Q Consensus        16 ~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~--~~v~~~~~sp~g~~l~-~~~~dg~i~iwd-~~~~~~~~~~~~~~~---   88 (378)
                      +-.+....++.|.+||+.+++.+..+..+.  ..+.+++|+|||++++ +++.++.|.+|| .+++.+..+..+...   
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~   81 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV   81 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccc
Confidence            345667788999999999999999887653  4578999999999875 556789999999 567777776655421   


Q ss_pred             ---eEEEE-----EEEEEe------------CCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe---
Q 046394           89 ---LKLQF-----LLASIN------------KLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT---  145 (378)
Q Consensus        89 ---~~l~~-----~l~s~~------------~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~---  145 (378)
                         ..++|     .+++++            .+..+.+||..++.....+.. ...+..++|+|+|.++++++.+..   
T Consensus        82 ~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~~d  160 (337)
T d1pbyb_          82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGLGRDLHVMD  160 (337)
T ss_dssp             ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEESSSEEEEE
T ss_pred             cceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccc-cCCceEEEEcCCCCEEEEEcCCcceee
Confidence               45566     343333            467899999999998888864 456889999999999998876543   


Q ss_pred             ---------------------------------------------------------------------------eeecC
Q 046394          146 ---------------------------------------------------------------------------MLCHQ  150 (378)
Q Consensus       146 ---------------------------------------------------------------------------~~~h~  150 (378)
                                                                                                 +..+.
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (337)
T d1pbyb_         161 PEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMD  240 (337)
T ss_dssp             TTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECS
T ss_pred             eecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCC
Confidence                                                                                       12233


Q ss_pred             CCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee--cCCceEEEEecCCCc
Q 046394          151 GPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL--PGHAKTLDFSRKDSG  203 (378)
Q Consensus       151 ~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~--~~~i~~~~~sp~g~~  203 (378)
                      ..+..++++|++.+++++  ++.|++||+.+++.+..+  ...+.+++|+|||.+
T Consensus       241 ~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dG~~  293 (337)
T d1pbyb_         241 VFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGST  293 (337)
T ss_dssp             SCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCE
T ss_pred             cceEEEEecccceEEEEc--cccEEEEECCCCcEEEEEcCCCCEEEEEECCCCCE
Confidence            445555666666665544  466777777777776666  455667777777765

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.77  E-value=1e-17  Score=147.43  Aligned_cols=169  Identities=12%  Similarity=0.054  Sum_probs=127.2

Q ss_pred             ceEEEEcC-CCCEEEEEeCCCcEEEEeCCCCeEEeeccCCC-eeEEEE-----EEEEEeCC--CeEEEEEcCCCcEEEEE
Q 046394           48 PYTLDFTS-SGRYMAAAGCKGYPYFYNRDGTELHCSKEHGE-VLKLQF-----LLASINKL--GQLRYQNVTMGEIVGNF  118 (378)
Q Consensus        48 v~~~~~sp-~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~l~~-----~l~s~~~d--~~i~iwd~~~~~~~~~~  118 (378)
                      .+.-.||| ||+++|+++ .|.|++||..+..+..+ .|.. +.+++|     .|++++.+  ..|++||+.+++... +
T Consensus         5 ~~~~~fSP~dG~~~a~~~-~g~v~v~d~~~~~~~~~-~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~-~   81 (360)
T d1k32a3           5 KFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKV-PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEK-F   81 (360)
T ss_dssp             GGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEEC-SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEE-C
T ss_pred             hhcccccCCCCCEEEEEE-CCeEEEEECCCCcEEEc-cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEE-e
Confidence            34678999 999999986 57999999877766666 4655 499999     56555443  379999998877543 2


Q ss_pred             ecCCCCeeEEEEcCCCCEEEEEcCCCeeeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee---cCCceEE
Q 046394          119 WTGLGRTDVIRVNPFNGVVSLGHSGGTMLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL---PGHAKTL  195 (378)
Q Consensus       119 ~~~~~~v~~~~~s~~~~~l~~~~~d~~~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~---~~~i~~~  195 (378)
                      .                            .|...|.+++|+|+|++|++++.++.+++|++.++.+...+   ...+.++
T Consensus        82 ~----------------------------~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (360)
T d1k32a3          82 E----------------------------ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDF  133 (360)
T ss_dssp             C----------------------------CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCE
T ss_pred             e----------------------------CCCceEEeeeecccccccceeccccccccccccccceeeeeecccccccch
Confidence            2                            57788899999999999999999999999999988887766   3678889


Q ss_pred             EEecCCCccc--------------------cCCCCCceEEEeeccCCcceeeeEEcCCCCeEEEecCCCeEEEE
Q 046394          196 DFSRKDSGDF--------------------SGSHNYNRYMGYSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGIL  249 (378)
Q Consensus       196 ~~sp~g~~~~--------------------~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~  249 (378)
                      +|+|||.+.+                    |+.......... . +...+..+.|+|+|+.|++++.++.+.+|
T Consensus       134 ~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~-~~~~~~~~~~spdg~~l~~~s~~~~~~~~  205 (360)
T d1k32a3         134 TISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAAT-T-ENSHDYAPAFDADSKNLYYLSYRSLDPSP  205 (360)
T ss_dssp             EECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECS-C-SSSBEEEEEECTTSCEEEEEESCCCCCEE
T ss_pred             hhccceeeeeeeccccccceeeccccceeeeccccCceeeec-c-cccccccccccCCCCEEEEEeCCCceEcc
Confidence            9999998632                    333333332222 2 45567889999999999988887765554

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.75  E-value=6.2e-18  Score=153.24  Aligned_cols=246  Identities=8%  Similarity=-0.092  Sum_probs=134.9

Q ss_pred             ceeeEEEeccceeeeeecccceeeEEe--e---cCCCCceEEEEcCCCCEEEEE-eCCCcEEEEe-CCCCeEEeeccCCC
Q 046394           15 VEKTWRIKQEAIAREVDILSSRNQYDI--M---LPELGPYTLDFTSSGRYMAAA-GCKGYPYFYN-RDGTELHCSKEHGE   87 (378)
Q Consensus        15 ~~~~~~~~~~~~i~~~d~~~~~~~~~l--~---~~~~~v~~~~~sp~g~~l~~~-~~dg~i~iwd-~~~~~~~~~~~~~~   87 (378)
                      ....+....++.+++||+.+++.....  .   +|...+.+++|+|||++|+++ ..++.+.+|| ..+..+..+..|..
T Consensus        73 Gk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~  152 (426)
T d1hzua2          73 GRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGM  152 (426)
T ss_dssp             SCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEE
T ss_pred             CCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCC
Confidence            345566677899999999998754433  2   344556678888999987655 4689999999 45556666555432


Q ss_pred             e-eEEEE------EEEEEeC-----------CCeEEEEEcCCCcE-EEEEecCCCCeeEEEEcCCCCEEEEEcCCCe---
Q 046394           88 V-LKLQF------LLASINK-----------LGQLRYQNVTMGEI-VGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT---  145 (378)
Q Consensus        88 ~-~~l~~------~l~s~~~-----------d~~i~iwd~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~---  145 (378)
                      . ....|      ..+.++.           .+.+.+++...+.. ......+...+..+.|+|++++++++..+..   
T Consensus       153 ~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~  232 (426)
T d1hzua2         153 TVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVA  232 (426)
T ss_dssp             CSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEE
T ss_pred             CccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeeccccee
Confidence            2 22222      2233333           34444444443321 2223345677889999999998888765554   


Q ss_pred             --------------eeecCCCEEEEEEecCCCE-E--EEEECCCeEEEEEcCCc----------eeeeeecCCceEEEEe
Q 046394          146 --------------MLCHQGPVSALAFHPNGHL-M--ATSGKDCKIKIWDLRKY----------EVLQTLPGHAKTLDFS  198 (378)
Q Consensus       146 --------------~~~h~~~v~~~~~sp~g~~-l--~t~~~d~~i~iwd~~~~----------~~~~~~~~~i~~~~~s  198 (378)
                                    ...+..+.....+.+.+.. +  ++.+.|+.+.+|+....          ..+......+..++|+
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~s  312 (426)
T d1hzua2         233 VIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTH  312 (426)
T ss_dssp             EEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECC
T ss_pred             eeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcC
Confidence                          0011111112222222211 1  12223455555554321          1122224556666677


Q ss_pred             cCCCc-----------------cccCCCCCceEEEee--------ccCCcceeeeEEcCCCCeEEEecCCCeEEEEEcCC
Q 046394          199 RKDSG-----------------DFSGSHNYNRYMGYS--------MVKGYQIGKVSFRPYEDVLGIGHSMGVSGILIPGS  253 (378)
Q Consensus       199 p~g~~-----------------~~~~~~~~~~~~~~~--------~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~~~s  253 (378)
                      |||.+                 .+|+..+........        ..+...|..+.|||||++++++       .|..++
T Consensus       313 Pdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs-------~~~~~~  385 (426)
T d1hzua2         313 PKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFS-------VWNGKN  385 (426)
T ss_dssp             TTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEE-------ECCCTT
T ss_pred             CCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCCCEEEEE-------EecCCC
Confidence            76653                 334443333322211        0145568899999999866432       122345


Q ss_pred             CCcccccccCCCcc
Q 046394          254 GEPNFDSWVANPFE  267 (378)
Q Consensus       254 ~d~~i~~w~~~~~~  267 (378)
                      .++.|.+||....+
T Consensus       386 ~~~~i~v~D~~T~k  399 (426)
T d1hzua2         386 DSSALVVVDDKTLK  399 (426)
T ss_dssp             SCCEEEEEETTTTE
T ss_pred             CCCeEEEEECCCCe
Confidence            67778888765543

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.74  E-value=4.3e-15  Score=126.94  Aligned_cols=184  Identities=11%  Similarity=0.080  Sum_probs=148.1

Q ss_pred             EEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEE-eCCCcEEEEeC-CCCeEEeeccCCCeeEEEE----
Q 046394           20 RIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAA-GCKGYPYFYNR-DGTELHCSKEHGEVLKLQF----   93 (378)
Q Consensus        20 ~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~-~~dg~i~iwd~-~~~~~~~~~~~~~~~~l~~----   93 (378)
                      ....++.|.+||+.+++.+..+..+ ..+..++|++++.+++++ ..++.+.+|+. ++.....+..+..+.++.|    
T Consensus        49 ~~~~~~~i~v~d~~t~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg  127 (301)
T d1l0qa2          49 ANAHSNDVSIIDTATNNVIATVPAG-SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDG  127 (301)
T ss_dssp             EEGGGTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTS
T ss_pred             EECCCCEEEEEECCCCceeeeeecc-ccccccccccccccccccccccceeeecccccceeeeeccccccceEEEeecCC
Confidence            4456789999999999999999887 568999999999876654 55778999995 5556677777777777888    


Q ss_pred             --EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe--------------eeecCCCEEEEE
Q 046394           94 --LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT--------------MLCHQGPVSALA  157 (378)
Q Consensus        94 --~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~--------------~~~h~~~v~~~~  157 (378)
                        +++++..++.+.+|+..++..+..+..+ ..+.+++++|++..+++++.+..              ...+...+..++
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (301)
T d1l0qa2         128 KKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIA  206 (301)
T ss_dssp             SEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEE
T ss_pred             CeeeeeeccccceeeeeccccceeeecccC-CCceEEEeeccccceeeecccccccccccccceeeeecccccCCcceee
Confidence              6677788999999999999988887644 56889999999998888776654              223445678899


Q ss_pred             EecCCCEEEEEEC---CCeEEEEEcCCceeeeee--cCCceEEEEecCCCccc
Q 046394          158 FHPNGHLMATSGK---DCKIKIWDLRKYEVLQTL--PGHAKTLDFSRKDSGDF  205 (378)
Q Consensus       158 ~sp~g~~l~t~~~---d~~i~iwd~~~~~~~~~~--~~~i~~~~~sp~g~~~~  205 (378)
                      |++++..++.++.   ++.|.+||+.+++.+..+  +..+..++|+|||++.+
T Consensus       207 ~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~va~spdg~~l~  259 (301)
T d1l0qa2         207 VNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVY  259 (301)
T ss_dssp             ECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEE
T ss_pred             ccccccccccccccceeeeeeeeecCCCeEEEEEcCCCCEEEEEEeCCCCEEE
Confidence            9999998776543   468999999999998888  57789999999998643

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.72  E-value=8e-17  Score=145.92  Aligned_cols=131  Identities=8%  Similarity=-0.050  Sum_probs=93.0

Q ss_pred             ceeeEEEeccceeeeeecccceee--EEee---cCCCCceEEEEcCCCCEE-EEEeCCCcEEEEe-CCCCeEEeeccCCC
Q 046394           15 VEKTWRIKQEAIAREVDILSSRNQ--YDIM---LPELGPYTLDFTSSGRYM-AAAGCKGYPYFYN-RDGTELHCSKEHGE   87 (378)
Q Consensus        15 ~~~~~~~~~~~~i~~~d~~~~~~~--~~l~---~~~~~v~~~~~sp~g~~l-~~~~~dg~i~iwd-~~~~~~~~~~~~~~   87 (378)
                      ....+....++.+.+||+.+++..  ..+.   .|.+.+.+..|||||++| ++++.++.|.+|| .++..+..+..+..
T Consensus        73 G~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~  152 (432)
T d1qksa2          73 GRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGM  152 (432)
T ss_dssp             SCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEE
T ss_pred             CCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCc
Confidence            344555567899999999887643  3333   344456667788999986 6777799999999 56677666654321


Q ss_pred             ------------eeEEEE------EEEEEeCCCeEEEEEcCCCcEEEEEe-cCCCCeeEEEEcCCCCEEEEEcCCCe
Q 046394           88 ------------VLKLQF------LLASINKLGQLRYQNVTMGEIVGNFW-TGLGRTDVIRVNPFNGVVSLGHSGGT  145 (378)
Q Consensus        88 ------------~~~l~~------~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~d~~  145 (378)
                                  ...+.+      ++++...++.|.+||..+++...... .....+..++|+|+|+++++++.++.
T Consensus       153 ~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~  229 (432)
T d1qksa2         153 TYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARN  229 (432)
T ss_dssp             CTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGT
T ss_pred             cccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccc
Confidence                        134455      66778888999999998877544332 24457889999999999888876654

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.71  E-value=1.2e-14  Score=126.16  Aligned_cols=227  Identities=12%  Similarity=0.090  Sum_probs=145.3

Q ss_pred             eccceeeeeeccccee--eEEeecCCCCceEEEEcCCCCEEEEEeC-CCcEEEEeCC-C-CeE---EeeccCCCeeEEEE
Q 046394           22 KQEAIAREVDILSSRN--QYDIMLPELGPYTLDFTSSGRYMAAAGC-KGYPYFYNRD-G-TEL---HCSKEHGEVLKLQF   93 (378)
Q Consensus        22 ~~~~~i~~~d~~~~~~--~~~l~~~~~~v~~~~~sp~g~~l~~~~~-dg~i~iwd~~-~-~~~---~~~~~~~~~~~l~~   93 (378)
                      ..++.|++|++.+...  +.....|.+.|.+|+|||||++|++++. |+.|.+|++. . ..+   ........+..++|
T Consensus        11 ~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~   90 (333)
T d1ri6a_          11 PESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHIST   90 (333)
T ss_dssp             GGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEE
T ss_pred             CCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEE
Confidence            4588999999875533  3333467789999999999999966655 8999999943 2 221   12222334577888


Q ss_pred             -----EEEEEe-CCCeEEEEEcCCCcEEEE--EecCCCCeeEEEEcCCCCEEEEEcCCCe--------------------
Q 046394           94 -----LLASIN-KLGQLRYQNVTMGEIVGN--FWTGLGRTDVIRVNPFNGVVSLGHSGGT--------------------  145 (378)
Q Consensus        94 -----~l~s~~-~d~~i~iwd~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~d~~--------------------  145 (378)
                           ++++++ .++.|.+|+.........  ...+...+.++.++|+++++++++....                    
T Consensus        91 spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  170 (333)
T d1ri6a_          91 DHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAE  170 (333)
T ss_dssp             CTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE
T ss_pred             cCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeecee
Confidence                 555555 578899999887654433  3356677889999999998887765443                    


Q ss_pred             -eeecCCCEEEEEEecCCCEEEEEE-CCCeEEEEEcCCce----eeeee---------cCCceEEEEecCCCccc-----
Q 046394          146 -MLCHQGPVSALAFHPNGHLMATSG-KDCKIKIWDLRKYE----VLQTL---------PGHAKTLDFSRKDSGDF-----  205 (378)
Q Consensus       146 -~~~h~~~v~~~~~sp~g~~l~t~~-~d~~i~iwd~~~~~----~~~~~---------~~~i~~~~~sp~g~~~~-----  205 (378)
                       ..........++|++++.+++... ..+...+|++....    ....+         ...+..+++++++.+.+     
T Consensus       171 ~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~  250 (333)
T d1ri6a_         171 VTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRT  250 (333)
T ss_dssp             EECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETT
T ss_pred             eeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeeccc
Confidence             112234567899999998876655 56678888865422    12222         13456788999998522     


Q ss_pred             ------cCCCCC---ceEEEeeccCCcceeeeEEcCCCCeEEEecC-CCeEEEE
Q 046394          206 ------SGSHNY---NRYMGYSMVKGYQIGKVSFRPYEDVLGIGHS-MGVSGIL  249 (378)
Q Consensus       206 ------~~~~~~---~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~-~g~~~~~  249 (378)
                            |.....   ..+..... ....+.+++|+|||++|++++. ++.+.+|
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~a~spDGk~l~va~~~~~~v~v~  303 (333)
T d1ri6a_         251 ASLITVFSVSEDGSVLSKEGFQP-TETQPRGFNVDHSGKYLIAAGQKSHHISVY  303 (333)
T ss_dssp             TTEEEEEEECTTSCCEEEEEEEE-CSSSCCCEEECTTSSEEEEECTTTCEEEEE
T ss_pred             CCeEEEEEEcCCCCEEEEEEEeC-CCCCeeEEEEeCCCCEEEEEECCCCeEEEE
Confidence                  211111   11122222 3455788999999997765543 3434443

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.71  E-value=3.8e-16  Score=135.76  Aligned_cols=129  Identities=13%  Similarity=0.097  Sum_probs=98.9

Q ss_pred             CEEEEEeCCCcEEEEeC-CCCeEEeeccCC--C-eeEEEE------EEEEEeCCCeEEEEEcCCCcEEEEEecCCC----
Q 046394           58 RYMAAAGCKGYPYFYNR-DGTELHCSKEHG--E-VLKLQF------LLASINKLGQLRYQNVTMGEIVGNFWTGLG----  123 (378)
Q Consensus        58 ~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~--~-~~~l~~------~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~----  123 (378)
                      .|+++++.|++|.|||. ++..+..+..+.  . +.+++|      ++++++.++.|.+||+.+++.+..+..+..    
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~   81 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV   81 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccc
Confidence            48999999999999994 566677776543  2 478888      456778899999999999999888876532    


Q ss_pred             -CeeEEEEcCCCCEEEEEcCCCe-------------------------eeecCCCEEEEEEecCCCEEEEEECCCeEEEE
Q 046394          124 -RTDVIRVNPFNGVVSLGHSGGT-------------------------MLCHQGPVSALAFHPNGHLMATSGKDCKIKIW  177 (378)
Q Consensus       124 -~v~~~~~s~~~~~l~~~~~d~~-------------------------~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iw  177 (378)
                       .+..++|+|++.+++++..+..                         ...+...+.+++|+|+|+++++++.+  +.+|
T Consensus        82 ~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~--~~~~  159 (337)
T d1pbyb_          82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRD--LHVM  159 (337)
T ss_dssp             ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEESSS--EEEE
T ss_pred             cceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccccCCceEEEEcCCCCEEEEEcCC--ccee
Confidence             3567999999999988765432                         22344567789999999999988755  6788


Q ss_pred             EcCCceeeeee
Q 046394          178 DLRKYEVLQTL  188 (378)
Q Consensus       178 d~~~~~~~~~~  188 (378)
                      |..+++....+
T Consensus       160 d~~~~~~~~~~  170 (337)
T d1pbyb_         160 DPEAGTLVEDK  170 (337)
T ss_dssp             ETTTTEEEEEE
T ss_pred             eeecCcEEEEe
Confidence            98877665544

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.70  E-value=4.6e-16  Score=135.75  Aligned_cols=93  Identities=8%  Similarity=-0.087  Sum_probs=74.4

Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEeC-CCCeEEeeccC-C-CeeEEEE------EEEEEeCCCeEEEEEcCCCcEEEEEecC
Q 046394           51 LDFTSSGRYMAAAGCKGYPYFYNR-DGTELHCSKEH-G-EVLKLQF------LLASINKLGQLRYQNVTMGEIVGNFWTG  121 (378)
Q Consensus        51 ~~~sp~g~~l~~~~~dg~i~iwd~-~~~~~~~~~~~-~-~~~~l~~------~l~s~~~d~~i~iwd~~~~~~~~~~~~~  121 (378)
                      ++|++++++|++++.++.|.+||. +++.+.++..+ . .+.+++|      ++++++.++.|.+||+.+++.+..+...
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~   81 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS   81 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeeccc
Confidence            578999999999999999999994 56666766543 3 4588999      5677778999999999999988877653


Q ss_pred             CC------CeeEEEEcCCCCEEEEEcCC
Q 046394          122 LG------RTDVIRVNPFNGVVSLGHSG  143 (378)
Q Consensus       122 ~~------~v~~~~~s~~~~~l~~~~~d  143 (378)
                      ..      .+..++|+|||+++++++.+
T Consensus        82 ~~~~~~~~~~~~v~~s~DG~~l~v~~~~  109 (346)
T d1jmxb_          82 SVPGEVGRSMYSFAISPDGKEVYATVNP  109 (346)
T ss_dssp             CSTTEEEECSSCEEECTTSSEEEEEEEE
T ss_pred             ccccccCCceEEEEEecCCCEEEEEecC
Confidence            32      35689999999998887643

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.67  E-value=1.4e-14  Score=126.98  Aligned_cols=223  Identities=10%  Similarity=-0.030  Sum_probs=153.4

Q ss_pred             cceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEe----------CCCcEEEEe-CCCCeEEeeccCCC-----
Q 046394           24 EAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAG----------CKGYPYFYN-RDGTELHCSKEHGE-----   87 (378)
Q Consensus        24 ~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~----------~dg~i~iwd-~~~~~~~~~~~~~~-----   87 (378)
                      ...+.+||..+++.+..+..+  .+..++|||||++|++.+          .++.|.+|| .++..+..+..+..     
T Consensus        27 ~~~v~v~D~~tg~~~~~~~~g--~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~  104 (355)
T d2bbkh_          27 VTQQFVIDGEAGRVIGMIDGG--FLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLV  104 (355)
T ss_dssp             SEEEEEEETTTTEEEEEEEEC--SSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCB
T ss_pred             cCeEEEEECCCCcEEEEEECC--CCCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeec
Confidence            467999999999999888876  344799999999887643          478999999 45666665543321     


Q ss_pred             ---eeEEEE-----EEE--EEeCCCeEEEEEcCCCcEEEEEecCC-------CCeeEEEEcCCCCEEEEEcCCCe-----
Q 046394           88 ---VLKLQF-----LLA--SINKLGQLRYQNVTMGEIVGNFWTGL-------GRTDVIRVNPFNGVVSLGHSGGT-----  145 (378)
Q Consensus        88 ---~~~l~~-----~l~--s~~~d~~i~iwd~~~~~~~~~~~~~~-------~~v~~~~~s~~~~~l~~~~~d~~-----  145 (378)
                         +..+.|     .++  ..+.+..+.+||..++..+..+....       .....+.+++++..+++...+..     
T Consensus       105 ~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~  184 (355)
T d2bbkh_         105 GTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEIT  184 (355)
T ss_dssp             SCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEE
T ss_pred             CCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEE
Confidence               245677     333  33567789999999999888776543       23456789999988877655443     


Q ss_pred             -----eeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeee--ee-------------cCCceEEEEecCCCc--
Q 046394          146 -----MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQ--TL-------------PGHAKTLDFSRKDSG--  203 (378)
Q Consensus       146 -----~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~--~~-------------~~~i~~~~~sp~g~~--  203 (378)
                           ...+...+....+++++..++.++.++.+.+|++..+....  ..             +.....++++|++..  
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~  264 (355)
T d2bbkh_         185 HTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIY  264 (355)
T ss_dssp             ECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEE
T ss_pred             ecccccceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEE
Confidence                 12233445567788888899999999999999998765421  11             123456888888864  


Q ss_pred             ------------------cccCCCCCceEEEeeccCCcceeeeEEcCCCCe--EEEecCCCeEEEEE
Q 046394          204 ------------------DFSGSHNYNRYMGYSMVKGYQIGKVSFRPYEDV--LGIGHSMGVSGILI  250 (378)
Q Consensus       204 ------------------~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~--l~~~~~~g~~~~~~  250 (378)
                                        .+|+..+...+..+..  ...+.+++|+|||+.  ++++..++.+.+|.
T Consensus       265 ~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~--~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D  329 (355)
T d2bbkh_         265 LLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM--GHEIDSINVSQDEKPLLYALSTGDKTLYIHD  329 (355)
T ss_dssp             EEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE--EEEECEEEECCSSSCEEEEEETTTTEEEEEE
T ss_pred             EEeccCCceeecCCCCeEEEEeCCCCcEEEEecC--CCCEEEEEEcCCCCeEEEEEECCCCEEEEEE
Confidence                              3455666666655543  455889999999973  33444455444443

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.61  E-value=7.9e-14  Score=121.22  Aligned_cols=126  Identities=13%  Similarity=0.019  Sum_probs=82.5

Q ss_pred             CceeeEEEeccceeeeeecccceeeEEeec-CCCCceEEEEcCCCCEEEEE-eCCCcEEEEeC-CCCeEEeeccCCC---
Q 046394           14 GVEKTWRIKQEAIAREVDILSSRNQYDIML-PELGPYTLDFTSSGRYMAAA-GCKGYPYFYNR-DGTELHCSKEHGE---   87 (378)
Q Consensus        14 ~~~~~~~~~~~~~i~~~d~~~~~~~~~l~~-~~~~v~~~~~sp~g~~l~~~-~~dg~i~iwd~-~~~~~~~~~~~~~---   87 (378)
                      +.+-.+....++.|.+||+.+++.+..+.. |...+.+++|+|||++++++ +.++.|.+||. ++..+..+.....   
T Consensus         7 ~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~   86 (346)
T d1jmxb_           7 GHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGE   86 (346)
T ss_dssp             TCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTE
T ss_pred             CCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecccccccc
Confidence            455666777789999999999999998875 45678999999999987554 56899999994 5555555443221   


Q ss_pred             ----eeEEEE-----EEEEE------------eCCCeEEEEEcCCCcEEEEEec--CCCCeeEEEEcCCCCEEEE
Q 046394           88 ----VLKLQF-----LLASI------------NKLGQLRYQNVTMGEIVGNFWT--GLGRTDVIRVNPFNGVVSL  139 (378)
Q Consensus        88 ----~~~l~~-----~l~s~------------~~d~~i~iwd~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~  139 (378)
                          +..++|     .++++            ..+..+.+||..+++....+..  ....+..+.+++++.+++.
T Consensus        87 ~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (346)
T d1jmxb_          87 VGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVA  161 (346)
T ss_dssp             EEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEE
T ss_pred             cCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEe
Confidence                234555     33322            2467788888776654322221  2234455556666655544

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.58  E-value=3.7e-12  Score=112.14  Aligned_cols=218  Identities=11%  Similarity=-0.057  Sum_probs=135.8

Q ss_pred             cceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeC----------CCcEEEEe-CCCCeEEeeccCCCe----
Q 046394           24 EAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGC----------KGYPYFYN-RDGTELHCSKEHGEV----   88 (378)
Q Consensus        24 ~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~----------dg~i~iwd-~~~~~~~~~~~~~~~----   88 (378)
                      ...+.+||..+++.+..+..+.  ...++|||||++|++++.          ++.|.+|| .+++.+..+..+...    
T Consensus        46 ~~~v~v~D~~tg~~~~~~~~~~--~~~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~  123 (373)
T d2madh_          46 IIQQWVLDAGSGSILGHVNGGF--LPNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDV  123 (373)
T ss_pred             CceEEEEECCCCCEEEEEeCCC--CccEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEe
Confidence            4578999999999999888764  337999999999988753          57899999 556666666555432    


Q ss_pred             ----eEEEE-------EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEE-EEEcCCCe-----------
Q 046394           89 ----LKLQF-------LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVV-SLGHSGGT-----------  145 (378)
Q Consensus        89 ----~~l~~-------~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~d~~-----------  145 (378)
                          ..+.|       +++....++.+.+|+..+.+.....    ....++.++|++..+ ++.+.++.           
T Consensus       124 ~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~  199 (373)
T d2madh_         124 GPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLL----SSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAA  199 (373)
T ss_pred             ccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEe----ccceeEEEecCCCcEEEEEcCCCeEEEEEcCCcee
Confidence                22333       2333344567777777766554443    345678899998654 56666666           


Q ss_pred             ---ee------ecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee---------------cCCceEEEEecCC
Q 046394          146 ---ML------CHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL---------------PGHAKTLDFSRKD  201 (378)
Q Consensus       146 ---~~------~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~---------------~~~i~~~~~sp~g  201 (378)
                         ..      ++......+.+++++ .++..+.++.+.+|+..........               ......++++|++
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  278 (373)
T d2madh_         200 GAGLVGAMLTAAQNLLTQPAQANKSG-RIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSS  278 (373)
T ss_pred             eEEEeeeccccCccceeeeEEECCCc-eEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCC
Confidence               00      111122334555555 4556677889999998876542211               1234556777777


Q ss_pred             Cc--------------------cccCCCCCceEEEeeccCCcceeeeEEcCCCCeE--EEecCCCeEEEEE
Q 046394          202 SG--------------------DFSGSHNYNRYMGYSMVKGYQIGKVSFRPYEDVL--GIGHSMGVSGILI  250 (378)
Q Consensus       202 ~~--------------------~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l--~~~~~~g~~~~~~  250 (378)
                      ..                    .+|+..+...+....  +...+..+.|+|||+.+  +++..++.+.+|.
T Consensus       279 ~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~--~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D  347 (373)
T d2madh_         279 DGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS--LGHDVDAISVAQDGGPDLYALSAGTEVLHIYD  347 (373)
T ss_pred             CeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEec--CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEE
Confidence            64                    334444555554443  45668899999999742  3344444433333

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.44  E-value=2e-12  Score=117.88  Aligned_cols=125  Identities=10%  Similarity=0.035  Sum_probs=94.6

Q ss_pred             EEEeccceeeeeecccceeeEEeecC-----CCCceEEEEcCCCCEEEEEeC---------CCcEEEEeCCCCeEEeecc
Q 046394           19 WRIKQEAIAREVDILSSRNQYDIMLP-----ELGPYTLDFTSSGRYMAAAGC---------KGYPYFYNRDGTELHCSKE   84 (378)
Q Consensus        19 ~~~~~~~~i~~~d~~~~~~~~~l~~~-----~~~v~~~~~sp~g~~l~~~~~---------dg~i~iwd~~~~~~~~~~~   84 (378)
                      +....++.+.+||+.+++....+..+     ...|.++.|||||++||+++.         ++.+.|||+.+..+..+..
T Consensus        30 ~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~~~l~~  109 (470)
T d2bgra1          30 YLYKQENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEER  109 (470)
T ss_dssp             EEEESSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSC
T ss_pred             EEEEcCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCccccccc
Confidence            44566788999999999887655544     467999999999999998753         5688999988888888888


Q ss_pred             CCCe-eEEEE-----EEEEEeCCCeEEEEEcCCCcEEEEEecC------------------CCCeeEEEEcCCCCEEEEE
Q 046394           85 HGEV-LKLQF-----LLASINKLGQLRYQNVTMGEIVGNFWTG------------------LGRTDVIRVNPFNGVVSLG  140 (378)
Q Consensus        85 ~~~~-~~l~~-----~l~s~~~d~~i~iwd~~~~~~~~~~~~~------------------~~~v~~~~~s~~~~~l~~~  140 (378)
                      +... ..+.|     .+|.. .++.+.+|+..+++.......+                  .+....+.|||||+.|+..
T Consensus       110 ~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~  188 (470)
T d2bgra1         110 IPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYA  188 (470)
T ss_dssp             CCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEE
T ss_pred             CCccccccccccCcceeeEe-ecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCcccee
Confidence            8765 88888     55554 5678999999888766543221                  1234668899999999887


Q ss_pred             cCCC
Q 046394          141 HSGG  144 (378)
Q Consensus       141 ~~d~  144 (378)
                      ..|.
T Consensus       189 ~~d~  192 (470)
T d2bgra1         189 QFND  192 (470)
T ss_dssp             EEEC
T ss_pred             EecC
Confidence            6543

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.44  E-value=1.2e-11  Score=106.79  Aligned_cols=145  Identities=10%  Similarity=0.035  Sum_probs=100.7

Q ss_pred             EEEEEeCCCcEEEEeCC-CCeE---EeeccCCCeeEEEE------EEEEEeCCCeEEEEEcCCCcEEEE---EecCCCCe
Q 046394           59 YMAAAGCKGYPYFYNRD-GTEL---HCSKEHGEVLKLQF------LLASINKLGQLRYQNVTMGEIVGN---FWTGLGRT  125 (378)
Q Consensus        59 ~l~~~~~dg~i~iwd~~-~~~~---~~~~~~~~~~~l~~------~l~s~~~d~~i~iwd~~~~~~~~~---~~~~~~~v  125 (378)
                      .+++++.|++|++|+++ ...+   ..+.....+..++|      +++++..|+.|.+|++........   .......+
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p   85 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSL   85 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCC
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCc
Confidence            34667789999999953 2222   33333334589999      446666799999999976543222   22344567


Q ss_pred             eEEEEcCCCCEEEEEcCCCe-----------------eeecCCCEEEEEEecCCCEEEEEEC-CCeEEEEEcCCceeeee
Q 046394          126 DVIRVNPFNGVVSLGHSGGT-----------------MLCHQGPVSALAFHPNGHLMATSGK-DCKIKIWDLRKYEVLQT  187 (378)
Q Consensus       126 ~~~~~s~~~~~l~~~~~d~~-----------------~~~h~~~v~~~~~sp~g~~l~t~~~-d~~i~iwd~~~~~~~~~  187 (378)
                      ..++|+|||++|++++.++.                 ...+...+.++.++|+++++++++. +..|.+|+.........
T Consensus        86 ~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~  165 (333)
T d1ri6a_          86 THISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVA  165 (333)
T ss_dssp             SEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEE
T ss_pred             eEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCccee
Confidence            88999999999998876543                 3345667888999999999887774 55799999876433221


Q ss_pred             e---------cCCceEEEEecCCCc
Q 046394          188 L---------PGHAKTLDFSRKDSG  203 (378)
Q Consensus       188 ~---------~~~i~~~~~sp~g~~  203 (378)
                      .         ...+..++|++++.+
T Consensus       166 ~~~~~~~~~~g~~p~~i~~~~~~~~  190 (333)
T d1ri6a_         166 QDPAEVTTVEGAGPRHMVFHPNEQY  190 (333)
T ss_dssp             EEEEEEECSTTCCEEEEEECTTSSE
T ss_pred             eeceeeeeecCCCccEEEEecccee
Confidence            1         245678999999875

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.38  E-value=4.1e-11  Score=105.39  Aligned_cols=206  Identities=9%  Similarity=-0.143  Sum_probs=137.8

Q ss_pred             cceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEe----------CCCcEEEEe-CCCCeEEeeccCCC-----
Q 046394           24 EAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAG----------CKGYPYFYN-RDGTELHCSKEHGE-----   87 (378)
Q Consensus        24 ~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~----------~dg~i~iwd-~~~~~~~~~~~~~~-----   87 (378)
                      ...+.+||..+++.+..+..+..  ..++|+|||++|++++          .|+.|.+|| .++..+..+..+..     
T Consensus        45 ~~~~~~~d~~~~~~~~~~~~~~~--~~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~  122 (368)
T d1mdah_          45 TTENWVSCAGCGVTLGHSLGAFL--SLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSV  122 (368)
T ss_dssp             SEEEEEEETTTTEEEEEEEECTT--CEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCB
T ss_pred             cceEEEEeCCCCcEEEEEeCCCC--CcceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecc
Confidence            35577889999999888887744  3689999999888764          366799999 56677766654322     


Q ss_pred             ---eeEEEE------EEEEEeCCCeEEEEEcCCCcEEEEEecCCC-------CeeEEEEcCCCCEEEEEcCCCe------
Q 046394           88 ---VLKLQF------LLASINKLGQLRYQNVTMGEIVGNFWTGLG-------RTDVIRVNPFNGVVSLGHSGGT------  145 (378)
Q Consensus        88 ---~~~l~~------~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-------~v~~~~~s~~~~~l~~~~~d~~------  145 (378)
                         +..++|      ++++...++.+.+||+.+++.+..+..+..       ....+.+++||..++....+..      
T Consensus       123 g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~  202 (368)
T d1mdah_         123 GPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIV  202 (368)
T ss_dssp             SCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEEC
T ss_pred             cCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceEccCCCceEEEEcCCCCEEEEEecCCceeeeee
Confidence               246778      444445689999999999998888765432       3345778888887777655544      


Q ss_pred             ----eeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee---------------cCCceEEEEecCCCc---
Q 046394          146 ----MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL---------------PGHAKTLDFSRKDSG---  203 (378)
Q Consensus       146 ----~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~---------------~~~i~~~~~sp~g~~---  203 (378)
                          ...+...+..+.+++++..+.+.  ++.+.++++..+......               ......++++|++..   
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v  280 (368)
T d1mdah_         203 GAQCTGAQNCSSQAAQANYPGMLVWAV--ASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMI  280 (368)
T ss_dssp             CCCSCTTSCBCSCCEEETTTTEEEECB--SSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEE
T ss_pred             ecccccccccceeecccccCcEEEEec--CCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEE
Confidence                22344455567777787655544  445666666554432211               123456788888763   


Q ss_pred             ----------------cccCCCCCceEEEeeccCCcceeeeEEcCCCC
Q 046394          204 ----------------DFSGSHNYNRYMGYSMVKGYQIGKVSFRPYED  235 (378)
Q Consensus       204 ----------------~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~  235 (378)
                                      .+|+..+...+..+..  ...+.++.|+|||+
T Consensus       281 ~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~--~~~~~~~a~spDG~  326 (368)
T d1mdah_         281 LTVEHSRSCLAAAENTSSVTASVGQTSGPISN--GHDSDAIIAAQDGA  326 (368)
T ss_dssp             EEEECSSCTTSCEEEEEEEESSSCCEEECCEE--EEEECEEEECCSSS
T ss_pred             EecCCCceeecCCceEEEEECCCCcEeEEecC--CCceeEEEECCCCC
Confidence                            2455566666555543  45688999999996

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.37  E-value=4.2e-11  Score=104.31  Aligned_cols=182  Identities=11%  Similarity=0.007  Sum_probs=120.9

Q ss_pred             eccceeeeeecccceeeEEeecCCC-------CceEEEEcCCCCEEEEEeC--CCcEEEEe-CCCCeEEeeccCCCeeEE
Q 046394           22 KQEAIAREVDILSSRNQYDIMLPEL-------GPYTLDFTSSGRYMAAAGC--KGYPYFYN-RDGTELHCSKEHGEVLKL   91 (378)
Q Consensus        22 ~~~~~i~~~d~~~~~~~~~l~~~~~-------~v~~~~~sp~g~~l~~~~~--dg~i~iwd-~~~~~~~~~~~~~~~~~l   91 (378)
                      ..++.|.+||+.+++....+..+..       .+..++|+|+|+++++++.  +..+.+|+ .++..+..+..+......
T Consensus        75 ~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (355)
T d2bbkh_          75 ERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIF  154 (355)
T ss_dssp             EEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEE
T ss_pred             CCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEe
Confidence            3467899999999998887765432       3567899999998887754  56789999 455566666554433222


Q ss_pred             EE---EEEEEeCCCeEEEEEcCCCcEEEEEec------CCCCeeEEEEcCCCCEEEEEcCCCe----------------e
Q 046394           92 QF---LLASINKLGQLRYQNVTMGEIVGNFWT------GLGRTDVIRVNPFNGVVSLGHSGGT----------------M  146 (378)
Q Consensus        92 ~~---~l~s~~~d~~i~iwd~~~~~~~~~~~~------~~~~v~~~~~s~~~~~l~~~~~d~~----------------~  146 (378)
                      ..   ..++.+.|+...++.......+..+..      +...+....+++++..++.++.++.                .
T Consensus       155 ~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  234 (355)
T d2bbkh_         155 PTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAV  234 (355)
T ss_dssp             EEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCE
T ss_pred             ecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEecc
Confidence            22   555566777776666544332222221      2233455667777777776666665                0


Q ss_pred             e----------ecCCCEEEEEEecCCCEEEEEECC----------CeEEEEEcCCceeeeee--cCCceEEEEecCCCc
Q 046394          147 L----------CHQGPVSALAFHPNGHLMATSGKD----------CKIKIWDLRKYEVLQTL--PGHAKTLDFSRKDSG  203 (378)
Q Consensus       147 ~----------~h~~~v~~~~~sp~g~~l~t~~~d----------~~i~iwd~~~~~~~~~~--~~~i~~~~~sp~g~~  203 (378)
                      .          ........++++|++..++..+.+          +.|.+||+.+++.+.++  ...+.+++|+|||+.
T Consensus       235 ~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~~~~~~~a~spDG~~  313 (355)
T d2bbkh_         235 EALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKP  313 (355)
T ss_dssp             ESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSC
T ss_pred             CCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecCCCCEEEEEEcCCCCe
Confidence            0          011223458899999987765543          36999999999998888  567899999999985

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.34  E-value=2.4e-10  Score=100.22  Aligned_cols=205  Identities=9%  Similarity=-0.024  Sum_probs=127.7

Q ss_pred             ccceeeeeecccceeeEEeecCCCCc-------eEEEEcCCCCEEEEEe--CCCcEEEEeCCCCeE-EeeccCCCeeEEE
Q 046394           23 QEAIAREVDILSSRNQYDIMLPELGP-------YTLDFTSSGRYMAAAG--CKGYPYFYNRDGTEL-HCSKEHGEVLKLQ   92 (378)
Q Consensus        23 ~~~~i~~~d~~~~~~~~~l~~~~~~v-------~~~~~sp~g~~l~~~~--~dg~i~iwd~~~~~~-~~~~~~~~~~~l~   92 (378)
                      .++.+.+||+.+++.+..+..+....       ..+.|+|+++.+++..  .++.+.+|+...... ....   .+.++.
T Consensus        95 ~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~  171 (373)
T d2madh_          95 RTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLS---SPTCYH  171 (373)
T ss_pred             cceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEec---cceeEE
Confidence            45789999999999988887765443       4678899998766554  356788888543332 2222   224444


Q ss_pred             E------EEEEEeCCCeEEEEEcCCCcEEEEEecCC------CCeeEEEEcCCCCEEEEEcCCCe---------------
Q 046394           93 F------LLASINKLGQLRYQNVTMGEIVGNFWTGL------GRTDVIRVNPFNGVVSLGHSGGT---------------  145 (378)
Q Consensus        93 ~------~l~s~~~d~~i~iwd~~~~~~~~~~~~~~------~~v~~~~~s~~~~~l~~~~~d~~---------------  145 (378)
                      |      .+++.+.|+.+.+||...+..........      .....+.+++++.+++.+.....               
T Consensus       172 ~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  251 (373)
T d2madh_         172 IHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAP  251 (373)
T ss_pred             EecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEEecCCceEEEEEcCCCeEEEEEe
Confidence            4      67888999999999998887766544221      11233445555544443322211               


Q ss_pred             eee----------cCCCEEEEEEecCCCEE----------EEEECCCeEEEEEcCCceeeeee--cCCceEEEEecCCCc
Q 046394          146 MLC----------HQGPVSALAFHPNGHLM----------ATSGKDCKIKIWDLRKYEVLQTL--PGHAKTLDFSRKDSG  203 (378)
Q Consensus       146 ~~~----------h~~~v~~~~~sp~g~~l----------~t~~~d~~i~iwd~~~~~~~~~~--~~~i~~~~~sp~g~~  203 (378)
                      ...          .......++++|++..+          ++...++.|.+||+.+++.+..+  ...+..++|||||+.
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~a~spDG~~  331 (373)
T d2madh_         252 IDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGP  331 (373)
T ss_pred             eccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEecCCCCeeEEEECCCCCE
Confidence            001          11223345666666544          34556678999999999999888  577899999999984


Q ss_pred             ------------cccCCCCCceEEEeeccCCcceeeeEEc
Q 046394          204 ------------DFSGSHNYNRYMGYSMVKGYQIGKVSFR  231 (378)
Q Consensus       204 ------------~~~~~~~~~~~~~~~~~~~~~v~~~~~s  231 (378)
                                  .+|+..+++.+..+.. ++...+.|++.
T Consensus       332 ~l~vt~~~d~~v~v~D~~tg~~~~~~~~-~g~~P~~l~~~  370 (373)
T d2madh_         332 DLYALSAGTEVLHIYDAGAGDQDQSTVE-LGSGPQVLSVM  370 (373)
T ss_pred             EEEEEeCCCCeEEEEECCCCCEEEEECC-CCCCCcEEEEe
Confidence                        3444444555444443 33444444443

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.33  E-value=2.7e-11  Score=107.16  Aligned_cols=231  Identities=9%  Similarity=0.002  Sum_probs=148.5

Q ss_pred             eeecCCceeeEEE---eccceeeeeecccceeeEEeec------------------------------CCCCceEEEEcC
Q 046394            9 YLEAEGVEKTWRI---KQEAIAREVDILSSRNQYDIML------------------------------PELGPYTLDFTS   55 (378)
Q Consensus         9 ~l~~~~~~~~~~~---~~~~~i~~~d~~~~~~~~~l~~------------------------------~~~~v~~~~~sp   55 (378)
                      |+.++..|.+|.+   .+++.+.+|++.+++.+..+..                              |........++|
T Consensus         2 ~v~pG~~De~y~f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtp   81 (441)
T d1qnia2           2 HVAPGELDEYYGFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRY   81 (441)
T ss_dssp             CCCTTCCCSEEEEEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEE
T ss_pred             cCCCCCCCCEEEEEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccC
Confidence            4556667777766   4579999999999988777543                              112233455579


Q ss_pred             CCCEEEEEe-CCCcEEEEeCCC-CeEEeecc--CCCeeEEEE-------EEEEEeCCC-----------------eEEEE
Q 046394           56 SGRYMAAAG-CKGYPYFYNRDG-TELHCSKE--HGEVLKLQF-------LLASINKLG-----------------QLRYQ  107 (378)
Q Consensus        56 ~g~~l~~~~-~dg~i~iwd~~~-~~~~~~~~--~~~~~~l~~-------~l~s~~~d~-----------------~i~iw  107 (378)
                      ||++|++.. .++.|.++|... +....+..  ..++..++|       +++..+.+.                 .+..+
T Consensus        82 DGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~i  161 (441)
T d1qnia2          82 DGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAI  161 (441)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEE
T ss_pred             CCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEee
Confidence            999987765 478899999654 44444432  334577888       444433322                 23558


Q ss_pred             EcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe------------------------------------------
Q 046394          108 NVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT------------------------------------------  145 (378)
Q Consensus       108 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~------------------------------------------  145 (378)
                      |..+.+...++... +.+..+.++|+|+++++++.+..                                          
T Consensus       162 D~~t~~v~~qI~v~-~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~  240 (441)
T d1qnia2         162 DAETMDVAWQVIVD-GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVP  240 (441)
T ss_dssp             ETTTCSEEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCC
T ss_pred             cCccceeeEEEecC-CCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcE
Confidence            88888877777644 46788999999999998876643                                          


Q ss_pred             -------------eeecCCCEEEEEEecCCCEEE-EEECCCeEEEEEcCCceee--------eee------cCCceEEEE
Q 046394          146 -------------MLCHQGPVSALAFHPNGHLMA-TSGKDCKIKIWDLRKYEVL--------QTL------PGHAKTLDF  197 (378)
Q Consensus       146 -------------~~~h~~~v~~~~~sp~g~~l~-t~~~d~~i~iwd~~~~~~~--------~~~------~~~i~~~~~  197 (378)
                                   +... .....+.++|||++++ ++..+++|.|||+.+....        ..+      .-.....+|
T Consensus       241 vvd~~~~~~v~~~IPvg-ksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~f  319 (441)
T d1qnia2         241 VVDGRGESEFTRYIPVP-KNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTF  319 (441)
T ss_dssp             EEECSSSCSSEEEECCB-SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEE
T ss_pred             EEEcccCCceEEEEeCC-CCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCccccee
Confidence                         1111 1235689999999865 5668999999998753211        111      112334567


Q ss_pred             ecCCCc----------cccC---------CCCCc-eEEEe-----eccCCcceeeeEEcCCCCeEEEecC
Q 046394          198 SRKDSG----------DFSG---------SHNYN-RYMGY-----SMVKGYQIGKVSFRPYEDVLGIGHS  242 (378)
Q Consensus       198 sp~g~~----------~~~~---------~~~~~-~~~~~-----~~~~~~~v~~~~~sp~g~~l~~~~~  242 (378)
                      +++|..          ..|+         ..... .+..+     .+ |...+.+.+|+|||++|++++.
T Consensus       320 d~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~G-H~~~~~~~t~~pdGk~l~s~~k  388 (441)
T d1qnia2         320 DGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPG-HNHASLTESRDADGKWLVVLSK  388 (441)
T ss_dssp             CSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEE-EEEETTTTSTTCCCCEEEEEES
T ss_pred             cCCceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCC-CCccccccccCCCCcEEEecCc
Confidence            777752          1222         12222 22222     35 7777889999999999988843

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.22  E-value=9.7e-11  Score=102.92  Aligned_cols=180  Identities=7%  Similarity=-0.123  Sum_probs=121.5

Q ss_pred             cceeeeeecccceeeEEeecCCC-------CceEEEEcCCCCEEEEEe-CCCcEEEEe-CCCCeEEeeccCCCeeEEEE-
Q 046394           24 EAIAREVDILSSRNQYDIMLPEL-------GPYTLDFTSSGRYMAAAG-CKGYPYFYN-RDGTELHCSKEHGEVLKLQF-   93 (378)
Q Consensus        24 ~~~i~~~d~~~~~~~~~l~~~~~-------~v~~~~~sp~g~~l~~~~-~dg~i~iwd-~~~~~~~~~~~~~~~~~l~~-   93 (378)
                      ++.|.+||..+++.+..+..+..       .+..++|||||++|+++. .++.+.+|| .++..+..+..+........ 
T Consensus        95 d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~  174 (368)
T d1mdah_          95 TDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGA  174 (368)
T ss_dssp             EEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEE
T ss_pred             CCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceEccCC
Confidence            57799999999999888876532       345799999999998876 478999999 55666666655544311112 


Q ss_pred             --EEEEEeCCCeEEEEEcCCCcEEEEEe------cCCCCeeEEEEcCCCCEEEEEcCCCe--------------------
Q 046394           94 --LLASINKLGQLRYQNVTMGEIVGNFW------TGLGRTDVIRVNPFNGVVSLGHSGGT--------------------  145 (378)
Q Consensus        94 --~l~s~~~d~~i~iwd~~~~~~~~~~~------~~~~~v~~~~~s~~~~~l~~~~~d~~--------------------  145 (378)
                        .++..+.||.+.+|++..........      .+...+..+.+++++..+++.+....                    
T Consensus       175 ~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  254 (368)
T d1mdah_         175 AATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNES  254 (368)
T ss_dssp             TTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCT
T ss_pred             CceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEecCCCEEEEeecCCceEEEeecccccc
Confidence              67778889999999987654322211      12233445667777666554433222                    


Q ss_pred             ----eeecCCCEEEEEEecCCCEEEEEECC---------CeEEEEEcCCceeeeee--cCCceEEEEecCCCc
Q 046394          146 ----MLCHQGPVSALAFHPNGHLMATSGKD---------CKIKIWDLRKYEVLQTL--PGHAKTLDFSRKDSG  203 (378)
Q Consensus       146 ----~~~h~~~v~~~~~sp~g~~l~t~~~d---------~~i~iwd~~~~~~~~~~--~~~i~~~~~sp~g~~  203 (378)
                          ..........++++|++..++....+         ..|.+||..+++.+.++  ...+.+++|||||+.
T Consensus       255 ~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~a~spDG~~  327 (368)
T d1mdah_         255 GRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGAS  327 (368)
T ss_dssp             HHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSC
T ss_pred             eeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecCCCceeEEEECCCCCE
Confidence                00011122357889988876654322         25999999999998888  567889999999975

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.03  E-value=1.2e-07  Score=79.37  Aligned_cols=168  Identities=10%  Similarity=0.107  Sum_probs=118.5

Q ss_pred             CceEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEeeccCC-------CeeEEEE-------EEEEEeCCCeEEEEEcCCC
Q 046394           47 GPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTELHCSKEHG-------EVLKLQF-------LLASINKLGQLRYQNVTMG  112 (378)
Q Consensus        47 ~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-------~~~~l~~-------~l~s~~~d~~i~iwd~~~~  112 (378)
                      .+..|+++|+|+.+++-..+..|++||.+|..+..+....       .+..+.+       +++..+.++.|..++. .+
T Consensus        24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~g  102 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ-YG  102 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT-TS
T ss_pred             CccEEEEcCCCCEEEEECCCCEEEEEeCCCCEEEEecccCCCcccccccccccccccccccceeccCCccccccccc-cc
Confidence            4789999999997777667889999999998887764321       1244554       3334445567777775 56


Q ss_pred             cEEEEEec-CCCCeeEEEEcCCCCEEEEEcCCCe---------------eeecCCCEEEEEEecCCCEEEEEECCCeEEE
Q 046394          113 EIVGNFWT-GLGRTDVIRVNPFNGVVSLGHSGGT---------------MLCHQGPVSALAFHPNGHLMATSGKDCKIKI  176 (378)
Q Consensus       113 ~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~d~~---------------~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~i  176 (378)
                      .....+.. .......+++.+++.++++....+.               ...+......+++.++|+.+++....+.|.+
T Consensus       103 ~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~  182 (279)
T d1q7fa_         103 QFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKV  182 (279)
T ss_dssp             CEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEE
T ss_pred             cceeecCCCcccccceeccccCCcEEEEeeccceeeEeccCCceeecccccccccccceeeeccceeEEeeeccccceee
Confidence            66666643 3456788999999987777665554               1224456788999999998888888999999


Q ss_pred             EEcCCceeeeee-----cCCceEEEEecCCCccccCCCCCceEEE
Q 046394          177 WDLRKYEVLQTL-----PGHAKTLDFSRKDSGDFSGSHNYNRYMG  216 (378)
Q Consensus       177 wd~~~~~~~~~~-----~~~i~~~~~sp~g~~~~~~~~~~~~~~~  216 (378)
                      ||. +++.+.++     ...+..|++.|+|...+.+......+..
T Consensus       183 ~d~-~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~  226 (279)
T d1q7fa_         183 FNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTI  226 (279)
T ss_dssp             EET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEE
T ss_pred             eec-CCceeeeecccccccCCcccccccCCeEEEEECCCCcEEEE
Confidence            996 56777777     1357889999999876655433333333

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.00  E-value=3.8e-07  Score=75.46  Aligned_cols=180  Identities=13%  Similarity=0.061  Sum_probs=107.3

Q ss_pred             eeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCC---cEEEEeCCCCeEEeeccCCCe-eEEEE------EE
Q 046394           26 IAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKG---YPYFYNRDGTELHCSKEHGEV-LKLQF------LL   95 (378)
Q Consensus        26 ~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~-~~l~~------~l   95 (378)
                      .|.+.|.. |.....+..+...+.+.+|||||+.||......   .+.+.+..+.....+..+.+. ....|      ++
T Consensus        20 ~l~i~d~d-G~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~i~   98 (269)
T d2hqsa1          20 ELRVSDYD-GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLA   98 (269)
T ss_dssp             EEEEEETT-SCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEE
T ss_pred             EEEEEcCC-CCCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeEEeeeecccccceecCCCCeee
Confidence            46777765 444445554457788999999999998765533   466667666666666555554 66666      33


Q ss_pred             EEEeCCCeEEEEE--cCCCcEEEEEecCCCCeeEEEEcCCCCEEEEE-cCCCe---------------eeecCCCEEEEE
Q 046394           96 ASINKLGQLRYQN--VTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLG-HSGGT---------------MLCHQGPVSALA  157 (378)
Q Consensus        96 ~s~~~d~~i~iwd--~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~d~~---------------~~~h~~~v~~~~  157 (378)
                      .....++...++.  ...... ..............+++++..++.. ..++.               +..+........
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~  177 (269)
T d2hqsa1          99 FALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDAD  177 (269)
T ss_dssp             EEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEE
T ss_pred             EeeecCCccceeecccccccc-eeeeeccccccccccccccccceecccccCCceEeeeecccccceeeecccccccccc
Confidence            3333343333332  222222 2222333444556677777644443 33332               333445567789


Q ss_pred             EecCCCEEEEEECCC---eEEEEEcCCceeeeee-cCCceEEEEecCCCccccC
Q 046394          158 FHPNGHLMATSGKDC---KIKIWDLRKYEVLQTL-PGHAKTLDFSRKDSGDFSG  207 (378)
Q Consensus       158 ~sp~g~~l~t~~~d~---~i~iwd~~~~~~~~~~-~~~i~~~~~sp~g~~~~~~  207 (378)
                      |+|+|+.++..+.++   .|.+.|...+...... ........|||||+..++.
T Consensus       178 ~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~~SPDG~~i~f~  231 (269)
T d2hqsa1         178 VSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYS  231 (269)
T ss_dssp             ECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCSSSCEEEEECTTSSEEEEE
T ss_pred             cccccceeEEEeecCCceeeeEeecccccceEeecCccccceEECCCCCEEEEE
Confidence            999999988776554   4555565555443222 4567788999999976553

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.96  E-value=3.4e-07  Score=77.47  Aligned_cols=212  Identities=9%  Similarity=-0.045  Sum_probs=132.2

Q ss_pred             ecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEeeccCCCeeEEEE-----EEEEEeCCCeEE
Q 046394           31 DILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTELHCSKEHGEVLKLQF-----LLASINKLGQLR  105 (378)
Q Consensus        31 d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~l~~-----~l~s~~~d~~i~  105 (378)
                      ++...+.+..+... ..+..++++|||+++++...++.|..|+.++...........+.+++|     ++++...++.+.
T Consensus        14 ~~~~~~v~~~~p~~-~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~   92 (302)
T d2p4oa1          14 ELAPAKIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQIHATVEGKVSGLAFTSNGDLVATGWNADSIP   92 (302)
T ss_dssp             CCCCEEEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEEECSSEEEEEEECTTSCEEEEEECTTSCE
T ss_pred             cCCcccEEEECCCC-CCcCCEEECCCCCEEEEeCCCCEEEEEeCCCCEEEEEcCCCCcceEEEcCCCCeEEEecCCceEE
Confidence            44455555666543 357899999999999998889999999988775443333334588998     777777778888


Q ss_pred             EEEcCCC--cEEEEEe-cCCCCeeEEEEcCCCCEEEEEcCCCe------------------------eeecCCCEEEEEE
Q 046394          106 YQNVTMG--EIVGNFW-TGLGRTDVIRVNPFNGVVSLGHSGGT------------------------MLCHQGPVSALAF  158 (378)
Q Consensus       106 iwd~~~~--~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~d~~------------------------~~~h~~~v~~~~~  158 (378)
                      .|+....  ....... ......+.+++.+++.++++.+.++.                        .......+..+.+
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~  172 (302)
T d2p4oa1          93 VVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKR  172 (302)
T ss_dssp             EEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEE
T ss_pred             EEEecccccceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccc
Confidence            8876543  2222222 23456889999999998887766554                        0011123455655


Q ss_pred             ecCCCEEEEEECCCeEEEEEcCCceeee---ee--cCCceEEEEecCCCccccCCCCCceEEE---------eec-cCCc
Q 046394          159 HPNGHLMATSGKDCKIKIWDLRKYEVLQ---TL--PGHAKTLDFSRKDSGDFSGSHNYNRYMG---------YSM-VKGY  223 (378)
Q Consensus       159 sp~g~~l~t~~~d~~i~iwd~~~~~~~~---~~--~~~i~~~~~sp~g~~~~~~~~~~~~~~~---------~~~-~~~~  223 (378)
                      +. +.++++.+..+.|..+++.......   .+  ...+..++|+++|.+.+...........         ... ....
T Consensus       173 ~~-~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~~~~~~~~~~~~~  251 (302)
T d2p4oa1         173 FG-NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRSTTIIAQAEQGVI  251 (302)
T ss_dssp             ET-TEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCCEEEEECGGGTCT
T ss_pred             cC-CceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCCCEEEEEecCCCCC
Confidence            53 3355666778888888876543322   12  3556789999999865444333222211         110 0123


Q ss_pred             ceeeeEE---cCCCCeEEEecCCC
Q 046394          224 QIGKVSF---RPYEDVLGIGHSMG  244 (378)
Q Consensus       224 ~v~~~~~---sp~g~~l~~~~~~g  244 (378)
                      ..++++|   ++|++.|.+++..|
T Consensus       252 ~pt~vafg~~~~D~~~Lyvtt~~g  275 (302)
T d2p4oa1         252 GSTAVAFGQTEGDCTAIYVVTNGG  275 (302)
T ss_dssp             TEEEEEECCSTTTTTEEEEEECTT
T ss_pred             CceEEEEcCCCCCCCEEEEECCCC
Confidence            4677888   66777665554443

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.93  E-value=1.1e-07  Score=78.69  Aligned_cols=206  Identities=9%  Similarity=0.006  Sum_probs=122.4

Q ss_pred             eEEeecCC--CCceEEEEcCCCCEEEEE-eCCCcEEEEeCCCCeEEe--eccCCCeeEEEE-----EEEEEeCCCeEEEE
Q 046394           38 QYDIMLPE--LGPYTLDFTSSGRYMAAA-GCKGYPYFYNRDGTELHC--SKEHGEVLKLQF-----LLASINKLGQLRYQ  107 (378)
Q Consensus        38 ~~~l~~~~--~~v~~~~~sp~g~~l~~~-~~dg~i~iwd~~~~~~~~--~~~~~~~~~l~~-----~l~s~~~d~~i~iw  107 (378)
                      +..+.+..  ..+.+++++++|+..++. +..+.|..++..+.....  ..+...+..+++     ++++....+.+.++
T Consensus         4 ~~~~~~~~~~~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~   83 (260)
T d1rwia_           4 VLPFTGIDFRLSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLA   83 (260)
T ss_dssp             ECCCCSCCSCCCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEEC
T ss_pred             EEecccCCCcCCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeeeeeceeeee
Confidence            33444433  467899999999966554 445778888754443333  233334577777     66666666666666


Q ss_pred             EcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe------------e--eecCCCEEEEEEecCCCEEEEEECCCe
Q 046394          108 NVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT------------M--LCHQGPVSALAFHPNGHLMATSGKDCK  173 (378)
Q Consensus       108 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~------------~--~~h~~~v~~~~~sp~g~~l~t~~~d~~  173 (378)
                      +-.++..+.... ....+..++++++++++++-..+..            .  ........+++++|+|+++++...++.
T Consensus        84 ~~~~~~~~~~~~-~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~  162 (260)
T d1rwia_          84 AGSNNQTVLPFD-GLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNR  162 (260)
T ss_dssp             TTCSCCEECCCC-SCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTE
T ss_pred             eeccceeeeeee-eeeecccccccccceeEeeccccccccccccccceeeeeeecccCCcceeeecCCCCEeeecccccc
Confidence            544444433222 2356789999999987776544443            1  111234578999999998888888899


Q ss_pred             EEEEEcCCceeeeee---cCCceEEEEecCCCccccCCCCCceEEEee---------ccCCcceeeeEEcCCCCeEEEec
Q 046394          174 IKIWDLRKYEVLQTL---PGHAKTLDFSRKDSGDFSGSHNYNRYMGYS---------MVKGYQIGKVSFRPYEDVLGIGH  241 (378)
Q Consensus       174 i~iwd~~~~~~~~~~---~~~i~~~~~sp~g~~~~~~~~~~~~~~~~~---------~~~~~~v~~~~~sp~g~~l~~~~  241 (378)
                      |..+|..........   -..+..|++.++|.+.+.+......+....         .........|+++++|.++++-.
T Consensus       163 i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~~~~~~~~~~P~~i~~d~~g~l~vad~  242 (260)
T d1rwia_         163 VVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADR  242 (260)
T ss_dssp             EEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCEECCCCSCCCEEEEEECTTCCEEEEEG
T ss_pred             ccccccccceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeEEEEccCCCCCeEEEEEeCCCCEEEEEC
Confidence            999998754332222   255688999999986554443333322111         10123456777777775544433


Q ss_pred             CCC
Q 046394          242 SMG  244 (378)
Q Consensus       242 ~~g  244 (378)
                      .++
T Consensus       243 ~~~  245 (260)
T d1rwia_         243 GND  245 (260)
T ss_dssp             GGT
T ss_pred             CCC
Confidence            333

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.92  E-value=3.4e-09  Score=93.49  Aligned_cols=191  Identities=7%  Similarity=-0.048  Sum_probs=117.6

Q ss_pred             EEEEeCCCcEEEEe-CCCCeEEeecc------------------------------CCC-eeEE--EE----EEEEEeCC
Q 046394           60 MAAAGCKGYPYFYN-RDGTELHCSKE------------------------------HGE-VLKL--QF----LLASINKL  101 (378)
Q Consensus        60 l~~~~~dg~i~iwd-~~~~~~~~~~~------------------------------~~~-~~~l--~~----~l~s~~~d  101 (378)
                      +++|+.+|.|+||+ .+++.+..+.-                              |.. ....  .+    ++++...+
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~   93 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKAN   93 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTT
T ss_pred             EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCC
Confidence            55777899999999 56666655422                              111 1111  11    66777788


Q ss_pred             CeEEEEEcCCCcEEEEEec-CCCCeeEEEEcCCCC--EEEEEcCCCe--------------------ee----------e
Q 046394          102 GQLRYQNVTMGEIVGNFWT-GLGRTDVIRVNPFNG--VVSLGHSGGT--------------------ML----------C  148 (378)
Q Consensus       102 ~~i~iwd~~~~~~~~~~~~-~~~~v~~~~~s~~~~--~l~~~~~d~~--------------------~~----------~  148 (378)
                      ++|.++|+.+++....+.. ....+..++|+|+|+  +++..+.+..                    +.          .
T Consensus        94 ~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~  173 (441)
T d1qnia2          94 TRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVI  173 (441)
T ss_dssp             TEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEE
T ss_pred             CEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEEe
Confidence            9999999999998877653 456789999999998  5555444332                    10          1


Q ss_pred             cCCCEEEEEEecCCCEEEEEECCC-eEEEEEcCCceeeeee--cCCceEEEEecCCCcccc---------CCCCCceEEE
Q 046394          149 HQGPVSALAFHPNGHLMATSGKDC-KIKIWDLRKYEVLQTL--PGHAKTLDFSRKDSGDFS---------GSHNYNRYMG  216 (378)
Q Consensus       149 h~~~v~~~~~sp~g~~l~t~~~d~-~i~iwd~~~~~~~~~~--~~~i~~~~~sp~g~~~~~---------~~~~~~~~~~  216 (378)
                      -.+.+..++|+|+|+++++++.+. .+..+|..+......+  ......+.++|+|++...         .......+..
T Consensus       174 v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~~  253 (441)
T d1qnia2         174 VDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFTRY  253 (441)
T ss_dssp             ESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCSSEEE
T ss_pred             cCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCceEEE
Confidence            123456799999999988877653 4444454444443333  223344456777776332         2233333334


Q ss_pred             eeccCCcceeeeEEcCCCCeEEEecCCCeEEEEEcCCCCcccccccC
Q 046394          217 YSMVKGYQIGKVSFRPYEDVLGIGHSMGVSGILIPGSGEPNFDSWVA  263 (378)
Q Consensus       217 ~~~~~~~~v~~~~~sp~g~~l~~~~~~g~~~~~~~~s~d~~i~~w~~  263 (378)
                      ...  +.....+.++|||+++           ++++..++++.+|++
T Consensus       254 IPv--gksPhGv~vSPDGkyl-----------~~~~~~~~tvsv~d~  287 (441)
T d1qnia2         254 IPV--PKNPHGLNTSPDGKYF-----------IANGKLSPTVSVIAI  287 (441)
T ss_dssp             ECC--BSSCCCEEECTTSCEE-----------EEECTTSSBEEEEEG
T ss_pred             EeC--CCCccCceECCCCCEE-----------EEeCCcCCcEEEEEe
Confidence            433  3446789999999855           444555556666654

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.78  E-value=6.5e-07  Score=77.83  Aligned_cols=159  Identities=11%  Similarity=0.003  Sum_probs=91.1

Q ss_pred             CCCceEEEEcCCCCEEEEEeCCCcEEEEeC--CCCeEEeec--cCCCeeEEEE-------EEEEEe-CCCeEEEEEcCC-
Q 046394           45 ELGPYTLDFTSSGRYMAAAGCKGYPYFYNR--DGTELHCSK--EHGEVLKLQF-------LLASIN-KLGQLRYQNVTM-  111 (378)
Q Consensus        45 ~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~--~~~~~~~~~--~~~~~~~l~~-------~l~s~~-~d~~i~iwd~~~-  111 (378)
                      ...+.-|+|+|++++|++++. +.+..|.+  ++.......  ....+..+.+       +++++. ..++|..+.+.. 
T Consensus        39 ~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~  117 (365)
T d1jofa_          39 DEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKF  117 (365)
T ss_dssp             TCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSS
T ss_pred             CCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccCC
Confidence            355678999999999988765 45777763  333332211  1111222222       233322 234444443321 


Q ss_pred             ------------CcE---EEEEe-cCCCCeeEEEEcCCCCEEEEEcCCCe--------------------eeecCCCEEE
Q 046394          112 ------------GEI---VGNFW-TGLGRTDVIRVNPFNGVVSLGHSGGT--------------------MLCHQGPVSA  155 (378)
Q Consensus       112 ------------~~~---~~~~~-~~~~~v~~~~~s~~~~~l~~~~~d~~--------------------~~~h~~~v~~  155 (378)
                                  +..   ..... .....+.++.|+|+|++++++.....                    ..........
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~  197 (365)
T d1jofa_         118 AGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRW  197 (365)
T ss_dssp             CCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEE
T ss_pred             CCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEE
Confidence                        111   11111 12235789999999998888764332                    1112356788


Q ss_pred             EEEecCCCEEEEEE-CCCeEEEEEcCCceee--eee------c--------------CCceEEEEecCCCcc
Q 046394          156 LAFHPNGHLMATSG-KDCKIKIWDLRKYEVL--QTL------P--------------GHAKTLDFSRKDSGD  204 (378)
Q Consensus       156 ~~~sp~g~~l~t~~-~d~~i~iwd~~~~~~~--~~~------~--------------~~i~~~~~sp~g~~~  204 (378)
                      ++|+|+|+++.+.. .+++|.+||+......  ...      .              .....+.++|||++.
T Consensus       198 i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l  269 (365)
T d1jofa_         198 VAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYM  269 (365)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEE
T ss_pred             EEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEE
Confidence            99999999875544 6889999998764322  111      0              124578999999973

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.74  E-value=2.3e-08  Score=90.41  Aligned_cols=19  Identities=11%  Similarity=0.128  Sum_probs=14.4

Q ss_pred             eeeeEEcCCCCeEEEecCC
Q 046394          225 IGKVSFRPYEDVLGIGHSM  243 (378)
Q Consensus       225 v~~~~~sp~g~~l~~~~~~  243 (378)
                      ...+.|||||+.||+...|
T Consensus       173 ~~~~~wSPDGk~ia~~~~d  191 (470)
T d2bgra1         173 YSALWWSPNGTFLAYAQFN  191 (470)
T ss_dssp             SBCEEECTTSSEEEEEEEE
T ss_pred             ccccEECCCCCccceeEec
Confidence            4567899999998886543

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.68  E-value=3.8e-06  Score=69.13  Aligned_cols=171  Identities=13%  Similarity=0.066  Sum_probs=102.1

Q ss_pred             eeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeC-CCcEEEEe--C-CCCeEEeeccCCCeeEEEE------EEE
Q 046394           27 AREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGC-KGYPYFYN--R-DGTELHCSKEHGEVLKLQF------LLA   96 (378)
Q Consensus        27 i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~-dg~i~iwd--~-~~~~~~~~~~~~~~~~l~~------~l~   96 (378)
                      +.+.+..++.. ..+..+........|||+|..++.... ++...++.  . ..................+      .++
T Consensus        65 ~~~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (269)
T d2hqsa1          65 LVIQTLANGAV-RQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAF  143 (269)
T ss_dssp             EEEEETTTCCE-EEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEE
T ss_pred             eeeeecccCce-eEEeeeecccccceecCCCCeeeEeeecCCccceeecccccccceeeeecccccccccccccccccee
Confidence            33444444333 345556678889999999998876654 33333333  2 2222222222222233333      555


Q ss_pred             EEeCCCe--EEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe---------------eeecCCCEEEEEEe
Q 046394           97 SINKLGQ--LRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT---------------MLCHQGPVSALAFH  159 (378)
Q Consensus        97 s~~~d~~--i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~---------------~~~h~~~v~~~~~s  159 (378)
                      +...++.  |.+.++..+.. ..+...........|+|++..++..+.++.               +..+........||
T Consensus       144 ~~~~~g~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~~S  222 (269)
T d2hqsa1         144 TSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLA  222 (269)
T ss_dssp             EECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCSSSCEEEEEC
T ss_pred             cccccCCceEeeeecccccc-eeeecccccccccccccccceeEEEeecCCceeeeEeecccccceEeecCccccceEEC
Confidence            5555554  55556555433 233345566778899999998887766554               33445566788999


Q ss_pred             cCCCEEEEEECC---CeEEEEEcCCceeeeee--cCCceEEEEec
Q 046394          160 PNGHLMATSGKD---CKIKIWDLRKYEVLQTL--PGHAKTLDFSR  199 (378)
Q Consensus       160 p~g~~l~t~~~d---~~i~iwd~~~~~~~~~~--~~~i~~~~~sp  199 (378)
                      |||++|+..+..   ..|.++++..+......  .+.+...+|||
T Consensus       223 PDG~~i~f~s~~~~~~~l~~~~~dg~~~~~lt~~~g~~~~p~WSP  267 (269)
T d2hqsa1         223 PNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAWSP  267 (269)
T ss_dssp             TTSSEEEEEEEETTEEEEEEEETTSCCEEECCCSSSEEEEEEECC
T ss_pred             CCCCEEEEEEcCCCCcEEEEEECCCCCEEEEeCCCCcEEeEEeCC
Confidence            999998765543   36889998765543322  34566777877

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.68  E-value=1.2e-05  Score=67.99  Aligned_cols=198  Identities=12%  Similarity=0.013  Sum_probs=116.9

Q ss_pred             CCceEEEEcCCCCEEEEEeC-------CCcEEEEeCCCCeEEeeccC------CCeeEEEE-----EEEEEeCCCeEEEE
Q 046394           46 LGPYTLDFTSSGRYMAAAGC-------KGYPYFYNRDGTELHCSKEH------GEVLKLQF-----LLASINKLGQLRYQ  107 (378)
Q Consensus        46 ~~v~~~~~sp~g~~l~~~~~-------dg~i~iwd~~~~~~~~~~~~------~~~~~l~~-----~l~s~~~d~~i~iw  107 (378)
                      ..+-+++|.|+|+++++...       +|.|..||..+.....+...      ..+..+.|     .++++...+.|..+
T Consensus        18 ~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~   97 (314)
T d1pjxa_          18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVV   97 (314)
T ss_dssp             TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEE
T ss_pred             CCCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEEE
Confidence            45678899999997766432       46789999665544333211      11367888     56666666778888


Q ss_pred             EcCCCcEEEEEecCC----CCeeEEEEcCCCCEEEEEcCCC------------------------e---eeecCCCEEEE
Q 046394          108 NVTMGEIVGNFWTGL----GRTDVIRVNPFNGVVSLGHSGG------------------------T---MLCHQGPVSAL  156 (378)
Q Consensus       108 d~~~~~~~~~~~~~~----~~v~~~~~s~~~~~l~~~~~d~------------------------~---~~~h~~~v~~~  156 (378)
                      |...+..........    ..++.+++.++|.+.++-....                        .   +...-...+.+
T Consensus        98 ~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg~~~~~~~~~~~pNGi  177 (314)
T d1pjxa_          98 QTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQVDTAFQFPNGI  177 (314)
T ss_dssp             ETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCEEEEEEEESSEEEE
T ss_pred             eCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecCceeEeeCCcceeeee
Confidence            876543322111111    2367899999998877643211                        1   11111223578


Q ss_pred             EEecCCC-----EEEEEECCCeEEEEEcCC-ceee-----eeec----CCceEEEEecCCCcc----------ccCCCCC
Q 046394          157 AFHPNGH-----LMATSGKDCKIKIWDLRK-YEVL-----QTLP----GHAKTLDFSRKDSGD----------FSGSHNY  211 (378)
Q Consensus       157 ~~sp~g~-----~l~t~~~d~~i~iwd~~~-~~~~-----~~~~----~~i~~~~~sp~g~~~----------~~~~~~~  211 (378)
                      +|+|++.     ++++-+..+.|..||+.. +...     ..+.    .....+++.++|...          .++....
T Consensus       178 ~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g  257 (314)
T d1pjxa_         178 AVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGG  257 (314)
T ss_dssp             EEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCB
T ss_pred             EECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEeCCCC
Confidence            8998764     455556788899998764 2221     1221    234678888888752          2333333


Q ss_pred             ceEEEeeccCCcceeeeEEcCCCCeE-EEecCCC
Q 046394          212 NRYMGYSMVKGYQIGKVSFRPYEDVL-GIGHSMG  244 (378)
Q Consensus       212 ~~~~~~~~~~~~~v~~~~~sp~g~~l-~~~~~~g  244 (378)
                      ........ ....+++++|.|+++.| ++.+.+|
T Consensus       258 ~~~~~i~~-p~~~~t~~afg~d~~~lyVt~~~~g  290 (314)
T d1pjxa_         258 QPKMRIRC-PFEKPSNLHFKPQTKTIFVTEHENN  290 (314)
T ss_dssp             SCSEEEEC-SSSCEEEEEECTTSSEEEEEETTTT
T ss_pred             EEEEEEEC-CCCCEEEEEEeCCCCEEEEEECCCC
Confidence            33334443 44567889999988643 4444555

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=1.5e-06  Score=78.01  Aligned_cols=181  Identities=10%  Similarity=0.031  Sum_probs=110.5

Q ss_pred             eccceeeeeecccceeeEEeecCC---CCceEEEEcCCCCEEEEEe---------CCCcEEEEeCCCCeEEeeccCCC--
Q 046394           22 KQEAIAREVDILSSRNQYDIMLPE---LGPYTLDFTSSGRYMAAAG---------CKGYPYFYNRDGTELHCSKEHGE--   87 (378)
Q Consensus        22 ~~~~~i~~~d~~~~~~~~~l~~~~---~~v~~~~~sp~g~~l~~~~---------~dg~i~iwd~~~~~~~~~~~~~~--   87 (378)
                      ..++.+.+||+.+++....+..+.   ..+....|||||++|+.+.         ..+.+.++|+.......+.....  
T Consensus        34 ~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~  113 (465)
T d1xfda1          34 EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSN  113 (465)
T ss_dssp             CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCS
T ss_pred             eCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCc
Confidence            456778999999887755555433   3567889999999988764         35678899965444444432211  


Q ss_pred             --eeEEEE-----EEEEEeCCCeEEEEEcCCCcEEEEEecC-CC-----------------CeeEEEEcCCCCEEEEEcC
Q 046394           88 --VLKLQF-----LLASINKLGQLRYQNVTMGEIVGNFWTG-LG-----------------RTDVIRVNPFNGVVSLGHS  142 (378)
Q Consensus        88 --~~~l~~-----~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~~-----------------~v~~~~~s~~~~~l~~~~~  142 (378)
                        .....|     .+|-. .++.|.+.+..++..++..... .+                 .-..+.|||||+.||....
T Consensus       114 ~~l~~~~wSPDG~~iafv-~~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~  192 (465)
T d1xfda1         114 AKLQYAGWGPKGQQLIFI-FENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAI  192 (465)
T ss_dssp             CCCSBCCBCSSTTCEEEE-ETTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEE
T ss_pred             cccceeeeccCCceEEEE-ecceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEe
Confidence              123444     33332 2566778777766554433221 11                 1247789999999988754


Q ss_pred             CCe---------------------------------------e---------------eecCCCEEEEEEecCCCEEEEE
Q 046394          143 GGT---------------------------------------M---------------LCHQGPVSALAFHPNGHLMATS  168 (378)
Q Consensus       143 d~~---------------------------------------~---------------~~h~~~v~~~~~sp~g~~l~t~  168 (378)
                      |..                                       +               ......+..+.|+|++++++..
T Consensus       193 D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~  272 (465)
T d1xfda1         193 NDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTW  272 (465)
T ss_dssp             ECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEE
T ss_pred             cccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEE
Confidence            332                                       0               0011135678899998876554


Q ss_pred             EC-CC---eEEEEEcCCceeeeee----cCC----ceEEEEecCCCc
Q 046394          169 GK-DC---KIKIWDLRKYEVLQTL----PGH----AKTLDFSRKDSG  203 (378)
Q Consensus       169 ~~-d~---~i~iwd~~~~~~~~~~----~~~----i~~~~~sp~g~~  203 (378)
                      .. +.   .|.++|..++++...+    .+.    .....|+|||..
T Consensus       273 ~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~  319 (465)
T d1xfda1         273 LNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRK  319 (465)
T ss_dssp             EETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCS
T ss_pred             EccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCe
Confidence            32 32   6888999988775444    121    245677887763

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.62  E-value=3.5e-06  Score=69.31  Aligned_cols=164  Identities=9%  Similarity=-0.016  Sum_probs=104.0

Q ss_pred             CCceEEEEcCCCCEEEEEeCCCcEEEEeC-CCCeEEeeccCCCeeEEEE-----EEEEEeCCCeEEEEEcCCCcEEEEEe
Q 046394           46 LGPYTLDFTSSGRYMAAAGCKGYPYFYNR-DGTELHCSKEHGEVLKLQF-----LLASINKLGQLRYQNVTMGEIVGNFW  119 (378)
Q Consensus        46 ~~v~~~~~sp~g~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~~~l~~-----~l~s~~~d~~i~iwd~~~~~~~~~~~  119 (378)
                      ..+..++++++|+++++....+.+++++. .+..+........+.++++     ++++-..+..+..++...........
T Consensus        57 ~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~  136 (260)
T d1rwia_          57 YQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPF  136 (260)
T ss_dssp             CSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCCCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCC
T ss_pred             cCceEEEEcCCCCEEEeeeeeceeeeeeeccceeeeeeeeeeecccccccccceeEeeccccccccccccccceeeeeee
Confidence            45778999999987776665656666553 2333333333344577776     44554555566666654433222222


Q ss_pred             cCCCCeeEEEEcCCCCEEEEEcCCCe--------------eeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceee
Q 046394          120 TGLGRTDVIRVNPFNGVVSLGHSGGT--------------MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVL  185 (378)
Q Consensus       120 ~~~~~v~~~~~s~~~~~l~~~~~d~~--------------~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~  185 (378)
                      ........++++|++.++++...++.              ....-.....|+++++|+++++....+.|..++..... .
T Consensus       137 ~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~-~  215 (260)
T d1rwia_         137 TGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT-S  215 (260)
T ss_dssp             CSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSC-C
T ss_pred             cccCCcceeeecCCCCEeeeccccccccccccccceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCe-E
Confidence            23356688999999987777655554              11234556889999999988888888888888765432 2


Q ss_pred             eee---c-CCceEEEEecCCCccccCCCC
Q 046394          186 QTL---P-GHAKTLDFSRKDSGDFSGSHN  210 (378)
Q Consensus       186 ~~~---~-~~i~~~~~sp~g~~~~~~~~~  210 (378)
                      ..+   . ..+..|+++++|...+.+...
T Consensus       216 ~~~~~~~~~~P~~i~~d~~g~l~vad~~~  244 (260)
T d1rwia_         216 TVLPFTGLNTPLAVAVDSDRTVYVADRGN  244 (260)
T ss_dssp             EECCCCSCCCEEEEEECTTCCEEEEEGGG
T ss_pred             EEEccCCCCCeEEEEEeCCCCEEEEECCC
Confidence            222   2 457899999999765554433

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.61  E-value=9e-06  Score=67.51  Aligned_cols=157  Identities=11%  Similarity=0.081  Sum_probs=108.1

Q ss_pred             cceeeeeecccceeeEEeec-CCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEeeccCC--C-eeEEEE-----E
Q 046394           24 EAIAREVDILSSRNQYDIML-PELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTELHCSKEHG--E-VLKLQF-----L   94 (378)
Q Consensus        24 ~~~i~~~d~~~~~~~~~l~~-~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~-~~~l~~-----~   94 (378)
                      ...+..++. .+.....+.. ....+.++++.++|.++++....+.+.+++.++..+..+....  . +..+++     +
T Consensus        92 ~~~i~~~~~-~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~i~~d~~g~i  170 (279)
T d1q7fa_          92 THQIQIYNQ-YGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEI  170 (279)
T ss_dssp             GCEEEEECT-TSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSEE
T ss_pred             ccccccccc-cccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccCCceeecccccccccccceeeeccceeE
Confidence            445666654 3444444432 3356789999999998888777888999999998887764332  2 366777     6


Q ss_pred             EEEEeCCCeEEEEEcCCCcEEEEEec--CCCCeeEEEEcCCCCEEEEEcCCC-e-------------ee--ecCCCEEEE
Q 046394           95 LASINKLGQLRYQNVTMGEIVGNFWT--GLGRTDVIRVNPFNGVVSLGHSGG-T-------------ML--CHQGPVSAL  156 (378)
Q Consensus        95 l~s~~~d~~i~iwd~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~d~-~-------------~~--~h~~~v~~~  156 (378)
                      +++....+.|.+||. +++.+.++..  .......|++.++|+++++-..++ .             +.  ........|
T Consensus       171 ~v~d~~~~~V~~~d~-~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~G~~~~~~~~~~~~~~p~~v  249 (279)
T d1q7fa_         171 FISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISALESKVKHAQCFDV  249 (279)
T ss_dssp             EEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCEEEEEEESSCCSCEEEE
T ss_pred             Eeeeccccceeeeec-CCceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECCCCCEEEEEeCCCCCCCEeEE
Confidence            777777889999996 6777777742  345678899999998776644332 2             11  112346788


Q ss_pred             EEecCCCEEEEEECCCeEEEEEcCCce
Q 046394          157 AFHPNGHLMATSGKDCKIKIWDLRKYE  183 (378)
Q Consensus       157 ~~sp~g~~l~t~~~d~~i~iwd~~~~~  183 (378)
                      ++.|+|++++ ++.++.|++|......
T Consensus       250 av~~dG~l~V-~~~n~~v~~fr~~~~~  275 (279)
T d1q7fa_         250 ALMDDGSVVL-ASKDYRLYIYRYVQLA  275 (279)
T ss_dssp             EEETTTEEEE-EETTTEEEEEECSCCC
T ss_pred             EEeCCCcEEE-EeCCCeEEEEEeeeec
Confidence            8999986544 4578889999876643

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.53  E-value=3.2e-06  Score=73.31  Aligned_cols=136  Identities=15%  Similarity=0.107  Sum_probs=88.6

Q ss_pred             CceEEEEcCCCCEEEEEeC-CCcEEEEe--CCCCeE--Eee---ccCCCeeEEEE------EEEEEeCCCeEEEEEcCCC
Q 046394           47 GPYTLDFTSSGRYMAAAGC-KGYPYFYN--RDGTEL--HCS---KEHGEVLKLQF------LLASINKLGQLRYQNVTMG  112 (378)
Q Consensus        47 ~v~~~~~sp~g~~l~~~~~-dg~i~iwd--~~~~~~--~~~---~~~~~~~~l~~------~l~s~~~d~~i~iwd~~~~  112 (378)
                      .+.++.|+|||+++++++. ...|.+|+  .++...  ..+   ....++..+.|      ++++.-.+++|.+|++..+
T Consensus       146 h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~  225 (365)
T d1jofa_         146 GIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPA  225 (365)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred             cceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCC
Confidence            4789999999999888865 44788887  333322  111   22334588889      5566777899999999765


Q ss_pred             cE--EE---EEec--------------CCCCeeEEEEcCCCCEEEEEcCC--Ce---------------e---------e
Q 046394          113 EI--VG---NFWT--------------GLGRTDVIRVNPFNGVVSLGHSG--GT---------------M---------L  147 (378)
Q Consensus       113 ~~--~~---~~~~--------------~~~~v~~~~~s~~~~~l~~~~~d--~~---------------~---------~  147 (378)
                      ..  +.   .+..              .......+.++|+|++|+++...  ..               +         .
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~  305 (365)
T d1jofa_         226 THMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTP  305 (365)
T ss_dssp             TCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECS
T ss_pred             CceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEE
Confidence            42  21   2211              01124578999999998877431  10               0         0


Q ss_pred             ecCCCEEEEEEec-CCCEEEEE-ECCCeEEEEEcCCc
Q 046394          148 CHQGPVSALAFHP-NGHLMATS-GKDCKIKIWDLRKY  182 (378)
Q Consensus       148 ~h~~~v~~~~~sp-~g~~l~t~-~~d~~i~iwd~~~~  182 (378)
                      .......+++++| +|++|+++ ..++.|.+|++...
T Consensus       306 ~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~  342 (365)
T d1jofa_         306 TSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             SCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             cCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence            1123446689998 89987666 46789999987654

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.51  E-value=1.7e-05  Score=67.03  Aligned_cols=176  Identities=13%  Similarity=0.137  Sum_probs=112.0

Q ss_pred             ceeeeeecccceeeEEeecC----CCCceEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEeeccCC------CeeEEEE-
Q 046394           25 AIAREVDILSSRNQYDIMLP----ELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTELHCSKEHG------EVLKLQF-   93 (378)
Q Consensus        25 ~~i~~~d~~~~~~~~~l~~~----~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~------~~~~l~~-   93 (378)
                      +.|..||..++.........    .+.+..++|+++|+.|+++...+.|..++.++.....+....      .++.+.+ 
T Consensus        46 g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d  125 (314)
T d1pjxa_          46 GEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFD  125 (314)
T ss_dssp             CEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEEC
T ss_pred             CEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEEC
Confidence            45777887777654332211    124678999999998888877777999998877655443221      1366777 


Q ss_pred             ----EEEEEeC---------------CCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCC----EEEEE-cCCCe----
Q 046394           94 ----LLASINK---------------LGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNG----VVSLG-HSGGT----  145 (378)
Q Consensus        94 ----~l~s~~~---------------d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~----~l~~~-~~d~~----  145 (378)
                          +.++-..               .|.|..++. .++..... ......+.++|+|++.    .|+++ +..+.    
T Consensus       126 ~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~-dg~~~~~~-~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~  203 (314)
T d1pjxa_         126 YEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTT-DGQMIQVD-TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSY  203 (314)
T ss_dssp             TTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECT-TSCEEEEE-EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEE
T ss_pred             CCCCEEEecCccCcccccccceeccCCceEEEEee-cCceeEee-CCcceeeeeEECCCCCcceeEEEEEeecccceEEe
Confidence                4444221               234444443 34433222 2234457889988764    44444 33333    


Q ss_pred             -------------eee----cCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee--c-CCceEEEEecCCC
Q 046394          146 -------------MLC----HQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL--P-GHAKTLDFSRKDS  202 (378)
Q Consensus       146 -------------~~~----h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~--~-~~i~~~~~sp~g~  202 (378)
                                   +..    +....-.|++.++|+++++....+.|.+||...+..+..+  + ..+++++|.||+.
T Consensus       204 d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~  280 (314)
T d1pjxa_         204 DIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTK  280 (314)
T ss_dssp             EEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSS
T ss_pred             eccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCC
Confidence                         000    1123457899999999888888999999999888776666  3 5688999999885

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.39  E-value=0.00019  Score=60.43  Aligned_cols=201  Identities=11%  Similarity=0.050  Sum_probs=118.2

Q ss_pred             eecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEe-ecc-CCCeeEEEE-----EEEEEeC----CCeEEEEEc
Q 046394           41 IMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTELHC-SKE-HGEVLKLQF-----LLASINK----LGQLRYQNV  109 (378)
Q Consensus        41 l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~-~~~-~~~~~~l~~-----~l~s~~~----d~~i~iwd~  109 (378)
                      +......+..++|.++|++.++-...+.|+.|+..+..... +.. ...+..++|     ++++...    .+.+...+.
T Consensus        35 ~~~~~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~  114 (319)
T d2dg1a1          35 ISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATE  114 (319)
T ss_dssp             EESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECT
T ss_pred             eccCCcCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcC
Confidence            33333455689999999977777678899999977664433 322 234588888     4444332    233555555


Q ss_pred             CCCcEEEEEec--CCCCeeEEEEcCCCCEEEEEcCCCe-------------------eeecCCCEEEEEEecCCCEE-EE
Q 046394          110 TMGEIVGNFWT--GLGRTDVIRVNPFNGVVSLGHSGGT-------------------MLCHQGPVSALAFHPNGHLM-AT  167 (378)
Q Consensus       110 ~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~d~~-------------------~~~h~~~v~~~~~sp~g~~l-~t  167 (378)
                      ..+........  ....++.+++.++|.+.++......                   +...-...+.++|+|+++.| ++
T Consensus       115 ~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~pnGia~s~dg~~lyva  194 (319)
T d2dg1a1         115 NGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVT  194 (319)
T ss_dssp             TSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEE
T ss_pred             CCceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccceeEEEeeccceeeeeeeccccceEEEe
Confidence            54444433322  2345788999999987665432111                   11112334679999999865 55


Q ss_pred             EECCCeEEEEEcCC-ceeee----ee------cCCceEEEEecCCCccccCC---------CCCceEEEeecc-----CC
Q 046394          168 SGKDCKIKIWDLRK-YEVLQ----TL------PGHAKTLDFSRKDSGDFSGS---------HNYNRYMGYSMV-----KG  222 (378)
Q Consensus       168 ~~~d~~i~iwd~~~-~~~~~----~~------~~~i~~~~~sp~g~~~~~~~---------~~~~~~~~~~~~-----~~  222 (378)
                      -+..+.|..||+.. +....    ..      ......+++.++|.+.+.+.         ..+..+..+..+     +.
T Consensus       195 d~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p~G~~l~~i~~P~~~~~~~  274 (319)
T d2dg1a1         195 ETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKRGYPIGQILIPGRDEGHM  274 (319)
T ss_dssp             EGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTTSCEEEEEECTTGGGTCS
T ss_pred             cccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECCCCcEEEEEeCCCcCCCcC
Confidence            56788999999864 22111    11      13356788888887532211         234444444331     12


Q ss_pred             cceeeeEEcCCCCeEEEec
Q 046394          223 YQIGKVSFRPYEDVLGIGH  241 (378)
Q Consensus       223 ~~v~~~~~sp~g~~l~~~~  241 (378)
                      ..+++++|.|++..|.+..
T Consensus       275 ~~~~~~~~~~~~~~~~~t~  293 (319)
T d2dg1a1         275 LRSTHPQFIPGTNQLIICS  293 (319)
T ss_dssp             CBCCEEEECTTSCEEEEEE
T ss_pred             ceeeeEEEeCCCCEEEEEc
Confidence            2467888888876665543

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.37  E-value=6.2e-05  Score=63.58  Aligned_cols=177  Identities=11%  Similarity=0.136  Sum_probs=106.2

Q ss_pred             cceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeC----CCcEEEEeCCCCeEEeeccCC----CeeEEEE--
Q 046394           24 EAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGC----KGYPYFYNRDGTELHCSKEHG----EVLKLQF--   93 (378)
Q Consensus        24 ~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~----dg~i~iwd~~~~~~~~~~~~~----~~~~l~~--   93 (378)
                      .+.|..|+..+......+......+..|+++++|+++++...    .+.|...+..+..+..+..+.    .++.+.+  
T Consensus        60 ~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~  139 (319)
T d2dg1a1          60 EGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDS  139 (319)
T ss_dssp             TCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECT
T ss_pred             CCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceeeeeccCCCcccCCcceeEEe
Confidence            455666666555444444444567889999999987776543    234555565554443332221    2356666  


Q ss_pred             ---EEEEEeC------CCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEc-CCCe---e--------------
Q 046394           94 ---LLASINK------LGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGH-SGGT---M--------------  146 (378)
Q Consensus        94 ---~l~s~~~------d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~---~--------------  146 (378)
                         ++++...      .+.+..++.. +..+..+.......+.++|+|+++.|+++. ..+.   +              
T Consensus       140 ~G~l~vtd~~~~~~~~~g~v~~~~~d-g~~~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~  218 (319)
T d2dg1a1         140 KGGFYFTDFRGYSTNPLGGVYYVSPD-FRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGA  218 (319)
T ss_dssp             TSCEEEEECCCBTTBCCEEEEEECTT-SCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEE
T ss_pred             ccceeecccccccccCcceeEEEecc-cceeEEEeeccceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccc
Confidence               3343221      1234444443 333333333335568899999998765553 3333   0              


Q ss_pred             -----eecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee--cC-------CceEEEEecCCC
Q 046394          147 -----LCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL--PG-------HAKTLDFSRKDS  202 (378)
Q Consensus       147 -----~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~--~~-------~i~~~~~sp~g~  202 (378)
                           .......-.|++.++|++.++....+.|.+||. .|+.+..+  +.       .+++++|.|++.
T Consensus       219 ~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~  287 (319)
T d2dg1a1         219 TIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTN  287 (319)
T ss_dssp             EEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSC
T ss_pred             eeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEeCCCcCCCcCceeeeEEEeCCCC
Confidence                 001122457899999999999889999999995 78888877  21       367888877654

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.28  E-value=0.00011  Score=61.46  Aligned_cols=176  Identities=11%  Similarity=-0.040  Sum_probs=107.2

Q ss_pred             cceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeC---CCCeEEee--ccCCCeeEEEE-----
Q 046394           24 EAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNR---DGTELHCS--KEHGEVLKLQF-----   93 (378)
Q Consensus        24 ~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~---~~~~~~~~--~~~~~~~~l~~-----   93 (378)
                      ++.|..|+....  ...+......+.+++|+|+|+++++...++.+.+|+.   .+......  ......+.+.+     
T Consensus        48 ~~~I~~i~p~g~--~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~  125 (302)
T d2p4oa1          48 VGEIVSITPDGN--QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQ  125 (302)
T ss_dssp             TTEEEEECTTCC--EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSE
T ss_pred             CCEEEEEeCCCC--EEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeeccccCCccccceeEEccCCC
Confidence            556666664432  2334445578999999999998888888888888873   22222221  22222377777     


Q ss_pred             EEEEEeCCCeEEEEEcCCCcEEEEEec--------C--CCCeeEEEEcCCCCEEEEEcCCCe----------------ee
Q 046394           94 LLASINKLGQLRYQNVTMGEIVGNFWT--------G--LGRTDVIRVNPFNGVVSLGHSGGT----------------ML  147 (378)
Q Consensus        94 ~l~s~~~d~~i~iwd~~~~~~~~~~~~--------~--~~~v~~~~~s~~~~~l~~~~~d~~----------------~~  147 (378)
                      ++++.+.++.+..+|...+........        .  ......+.++.+ .++++.+..+.                ..
T Consensus       126 ~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~-~l~~~~~~~~~i~~~~~~~~~~~~~~~~~  204 (302)
T d2p4oa1         126 YLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGN-FLYVSNTEKMLLLRIPVDSTDKPGEPEIF  204 (302)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETT-EEEEEETTTTEEEEEEBCTTSCBCCCEEE
T ss_pred             EEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccCC-ceeeecCCCCeEEeccccccccccccccc
Confidence            777777888898888877654332221        1  123445555432 23333333433                11


Q ss_pred             ecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCcee-eeee---cCCceEEEE---ecCCC
Q 046394          148 CHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEV-LQTL---PGHAKTLDF---SRKDS  202 (378)
Q Consensus       148 ~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~-~~~~---~~~i~~~~~---sp~g~  202 (378)
                      ........++++++|+++++...++.|..++...... +...   -..+++++|   ++|++
T Consensus       205 ~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~~~~~~~~~~~~~~pt~vafg~~~~D~~  266 (302)
T d2p4oa1         205 VEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRSTTIIAQAEQGVIGSTAVAFGQTEGDCT  266 (302)
T ss_dssp             EESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCCEEEEECGGGTCTTEEEEEECCSTTTTT
T ss_pred             cCCCCCcceEECCCCCEEEEEcCCCcEEEECCCCCEEEEEecCCCCCCceEEEEcCCCCCCC
Confidence            1233455799999999888888899999997754222 3333   245789999   45554

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.16  E-value=0.0013  Score=54.50  Aligned_cols=185  Identities=11%  Similarity=-0.066  Sum_probs=109.1

Q ss_pred             EEEEcCCCCEEEEE-eCCCcEEEEeCCCCeEEeeccCCCeeEEEE----EEEEEeCCCeEEEEEcCCCcEEEEEecC---
Q 046394           50 TLDFTSSGRYMAAA-GCKGYPYFYNRDGTELHCSKEHGEVLKLQF----LLASINKLGQLRYQNVTMGEIVGNFWTG---  121 (378)
Q Consensus        50 ~~~~sp~g~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~l~~----~l~s~~~d~~i~iwd~~~~~~~~~~~~~---  121 (378)
                      +..|++....|... -..+.|..||..+.....+.....+.++++    .++.++.+ -|.++|..+++........   
T Consensus        22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~~~~~~~~~~i~~~~dg~l~va~~~-gl~~~d~~tg~~~~l~~~~~~~  100 (295)
T d2ghsa1          22 GPTFDPASGTAWWFNILERELHELHLASGRKTVHALPFMGSALAKISDSKQLIASDD-GLFLRDTATGVLTLHAELESDL  100 (295)
T ss_dssp             EEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEECSSCEEEEEEEETTEEEEEETT-EEEEEETTTCCEEEEECSSTTC
T ss_pred             CCeEECCCCEEEEEECCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCEEEEEeC-ccEEeecccceeeEEeeeecCC
Confidence            56788755544444 356789999977666666655445567777    44444554 5888999888765433221   


Q ss_pred             -CCCeeEEEEcCCCCEEEEEcCCCe-----------------eeecCCCEEEEEEecCCCEEE-EEECCCeEEEEEcCC-
Q 046394          122 -LGRTDVIRVNPFNGVVSLGHSGGT-----------------MLCHQGPVSALAFHPNGHLMA-TSGKDCKIKIWDLRK-  181 (378)
Q Consensus       122 -~~~v~~~~~s~~~~~l~~~~~d~~-----------------~~~h~~~v~~~~~sp~g~~l~-t~~~d~~i~iwd~~~-  181 (378)
                       ...++.+.+.|+|.+.++......                 +...-...+.++|+|+++.+. +-+..+.|..|++.. 
T Consensus       101 ~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~  180 (295)
T d2ghsa1         101 PGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDAR  180 (295)
T ss_dssp             TTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTT
T ss_pred             CcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeeccCCcceeeecCCCceEEEeecccceeeEeeeccc
Confidence             134788899999987665432211                 111223456789999998654 555677898888742 


Q ss_pred             -ce----e--eeee---cCCceEEEEecCCCcc----------ccCCCCCceEEEeeccCCcceeeeEEc-CCCCeE
Q 046394          182 -YE----V--LQTL---PGHAKTLDFSRKDSGD----------FSGSHNYNRYMGYSMVKGYQIGKVSFR-PYEDVL  237 (378)
Q Consensus       182 -~~----~--~~~~---~~~i~~~~~sp~g~~~----------~~~~~~~~~~~~~~~~~~~~v~~~~~s-p~g~~l  237 (378)
                       +.    .  ...+   .+.+..+++..+|.+-          .++ ..+..+..+.. ....+++++|- ||.+.|
T Consensus       181 ~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~d-p~G~~~~~i~l-P~~~~T~~~FGG~d~~~L  255 (295)
T d2ghsa1         181 TGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYD-TDGNHIARYEV-PGKQTTCPAFIGPDASRL  255 (295)
T ss_dssp             TCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEEC-TTCCEEEEEEC-SCSBEEEEEEESTTSCEE
T ss_pred             ccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEec-CCCcEeeEecC-CCCceEEEEEeCCCCCEE
Confidence             11    1  1111   2446778888877642          122 23444455544 34456777774 454433

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.94  E-value=0.0015  Score=54.14  Aligned_cols=173  Identities=14%  Similarity=0.095  Sum_probs=109.4

Q ss_pred             cceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEeeccCC----C--eeEEEE----
Q 046394           24 EAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGTELHCSKEHG----E--VLKLQF----   93 (378)
Q Consensus        24 ~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----~--~~~l~~----   93 (378)
                      .+.|..||..+++.. .+.. ...+.++++.++|.++++ +.+ .|.++|..+..+..+....    .  ++++.+    
T Consensus        39 ~~~I~r~d~~~g~~~-~~~~-~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G  114 (295)
T d2ghsa1          39 ERELHELHLASGRKT-VHAL-PFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSG  114 (295)
T ss_dssp             GTEEEEEETTTTEEE-EEEC-SSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTS
T ss_pred             CCEEEEEECCCCeEE-EEEC-CCCcEEEEEecCCCEEEE-EeC-ccEEeecccceeeEEeeeecCCCcccceeeEECCCC
Confidence            466777887777543 2322 356889999999876665 455 5889996554444432211    1  255555    


Q ss_pred             -EEEEEeC----CCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcC-CCe----------------------
Q 046394           94 -LLASINK----LGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHS-GGT----------------------  145 (378)
Q Consensus        94 -~l~s~~~----d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d~~----------------------  145 (378)
                       +.++...    .+.-.+|.+..++....+. .....+.++|++++..++.+.. .+.                      
T Consensus       115 ~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~-~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~  193 (295)
T d2ghsa1         115 ALWIGTMGRKAETGAGSIYHVAKGKVTKLFA-DISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFID  193 (295)
T ss_dssp             CEEEEEEETTCCTTCEEEEEEETTEEEEEEE-EESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEE
T ss_pred             CEEEEeccccccccceeEeeecCCcEEEEee-ccCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEec
Confidence             3333221    2334566666676544443 3355788999999986655543 332                      


Q ss_pred             eeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeeee--c-CCceEEEEe-cCCC
Q 046394          146 MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQTL--P-GHAKTLDFS-RKDS  202 (378)
Q Consensus       146 ~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~--~-~~i~~~~~s-p~g~  202 (378)
                      ..+..+....+++..+|++.++.-..+.|..||. .|+.+..+  + ..+++++|- ||..
T Consensus       194 ~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~lP~~~~T~~~FGG~d~~  253 (295)
T d2ghsa1         194 STGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDAS  253 (295)
T ss_dssp             CTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSC
T ss_pred             cCcccccccceEEcCCCCEEeeeeCCCceEEecC-CCcEeeEecCCCCceEEEEEeCCCCC
Confidence            0112334678899999998888878889999995 68888887  3 568999996 4443

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.93  E-value=0.00075  Score=54.96  Aligned_cols=66  Identities=20%  Similarity=0.076  Sum_probs=47.0

Q ss_pred             EEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeC-CC-----cEEEEeCCCCeEEeeccC
Q 046394           19 WRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGC-KG-----YPYFYNRDGTELHCSKEH   85 (378)
Q Consensus        19 ~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~-dg-----~i~iwd~~~~~~~~~~~~   85 (378)
                      +.+..++-|.++|+.+++. ..|..+.+.+...+|||||+.||.... ++     .|.+++..+.....+..+
T Consensus        15 v~f~~~~dl~~~d~~~g~~-~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~   86 (281)
T d1k32a2          15 IIFVCCDDLWEHDLKSGST-RKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYF   86 (281)
T ss_dssp             EEEEETTEEEEEETTTCCE-EEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCC
T ss_pred             EEEEeCCcEEEEECCCCCE-EEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeeec
Confidence            3444566788889988775 467777778899999999999886543 22     477777777666666443

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.81  E-value=0.0019  Score=52.36  Aligned_cols=91  Identities=14%  Similarity=0.026  Sum_probs=60.6

Q ss_pred             EEcCC--CCEEEEEeCCCcEEEEeCCCCeEEeeccCCCe-eEEEE-----EEEE-EeCC-----CeEEEEEcCCCcEEEE
Q 046394           52 DFTSS--GRYMAAAGCKGYPYFYNRDGTELHCSKEHGEV-LKLQF-----LLAS-INKL-----GQLRYQNVTMGEIVGN  117 (378)
Q Consensus        52 ~~sp~--g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~l~~-----~l~s-~~~d-----~~i~iwd~~~~~~~~~  117 (378)
                      ..|||  |+.+|..+ +|.|.+.|+.+.....+..+.+. ....|     .||. ...+     ..|.+++..+++....
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~l   83 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRI   83 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEEC
T ss_pred             ccCCCCCCCEEEEEe-CCcEEEEECCCCCEEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEe
Confidence            45788  99888764 56799999888777778777665 77888     4443 2222     2477788877765432


Q ss_pred             Eec------CCCCeeEEEEcCCCCEEEEEcCC
Q 046394          118 FWT------GLGRTDVIRVNPFNGVVSLGHSG  143 (378)
Q Consensus       118 ~~~------~~~~v~~~~~s~~~~~l~~~~~d  143 (378)
                      ...      .......+.|+|+|+.|+.....
T Consensus        84 t~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~  115 (281)
T d1k32a2          84 TYFSGKSTGRRMFTDVAGFDPDGNLIISTDAM  115 (281)
T ss_dssp             CCCCEEEETTEECSEEEEECTTCCEEEEECTT
T ss_pred             eecCCCccCccccccccccCCCCCEEEEEEcc
Confidence            211      11245678999999988876543

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.50  E-value=0.00021  Score=63.57  Aligned_cols=49  Identities=6%  Similarity=-0.061  Sum_probs=27.2

Q ss_pred             EEEEecCCCEEEEEE---------CCCeEEEEEcCCceeeeee-----cCCceEEEEecCCCc
Q 046394          155 ALAFHPNGHLMATSG---------KDCKIKIWDLRKYEVLQTL-----PGHAKTLDFSRKDSG  203 (378)
Q Consensus       155 ~~~~sp~g~~l~t~~---------~d~~i~iwd~~~~~~~~~~-----~~~i~~~~~sp~g~~  203 (378)
                      ...|||||++++...         ..+.+.|||+.++......     ...+....|||||..
T Consensus        65 ~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~  127 (465)
T d1xfda1          65 RYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQ  127 (465)
T ss_dssp             EEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTC
T ss_pred             eeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeeccCCce
Confidence            344555555544432         2456777787776543221     234556778888875

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.48  E-value=0.017  Score=49.26  Aligned_cols=174  Identities=10%  Similarity=0.048  Sum_probs=112.8

Q ss_pred             CCeeecCCceeeEEEec---cceeeeeecccceeeEEeecCC--------------------------------------
Q 046394            7 GGYLEAEGVEKTWRIKQ---EAIAREVDILSSRNQYDIMLPE--------------------------------------   45 (378)
Q Consensus         7 ~~~l~~~~~~~~~~~~~---~~~i~~~d~~~~~~~~~l~~~~--------------------------------------   45 (378)
                      .+++.++..|..|.+|+   .+.++++-+-+++.+..+..-+                                      
T Consensus         2 ~~~v~pG~~Deyy~f~SgG~sG~v~v~G~PSmR~l~~ipvF~~~~~~G~G~~~es~~il~~~~~~~t~~~l~~~g~~~~~   81 (459)
T d1fwxa2           2 DGSVAPGQLDDYYGFWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHD   81 (459)
T ss_dssp             CCCCCTTCCCSEEEEECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCC--------------CC
T ss_pred             CcccCCCCcccEEEEeeCCccceEEEEecCCcceEEEeeeecCCCCcccCcchhHHHHhhcccChhhhhhhhccCccccc
Confidence            35566666777777765   5889999888887655543210                                      


Q ss_pred             -CCc--eEEEEcC---CCCEEEEEeC-CCcEEEEeCCCCeE-E--eeccCCCeeEEEE-------EEEEEeCC-------
Q 046394           46 -LGP--YTLDFTS---SGRYMAAAGC-KGYPYFYNRDGTEL-H--CSKEHGEVLKLQF-------LLASINKL-------  101 (378)
Q Consensus        46 -~~v--~~~~~sp---~g~~l~~~~~-dg~i~iwd~~~~~~-~--~~~~~~~~~~l~~-------~l~s~~~d-------  101 (378)
                       +..  ..+.+..   ||++|++... ++.|.+.|+..... .  .+....+...+..       +++..+.+       
T Consensus        82 ~GD~HHP~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pnd  161 (459)
T d1fwxa2          82 NGDLHHVHMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVND  161 (459)
T ss_dssp             CCCBCCEEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCS
T ss_pred             CCCcCCCcccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCC
Confidence             011  1445543   7888887765 77899999655443 2  2332333444443       55555542       


Q ss_pred             -----------CeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCCCe-------------------------
Q 046394          102 -----------GQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSGGT-------------------------  145 (378)
Q Consensus       102 -----------~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~-------------------------  145 (378)
                                 +.+.++|..+.+....+... +....+.++|+|+++++.+.+..                         
T Consensus       162 g~~l~d~~~y~~~~t~ID~~tm~V~~QV~V~-g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie  240 (459)
T d1fwxa2         162 GTNMEDVANYVNVFTAVDADKWEVAWQVLVS-GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIE  240 (459)
T ss_dssp             SSSTTCGG-EEEEEEEEETTTTEEEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHH
T ss_pred             CccccchhhcceEEEEEecCCceEEEEeeeC-CChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhH
Confidence                       34678899888887776543 45778999999999988775432                         


Q ss_pred             ----------------e-------------eecCCCEEEEEEecCCCEEEEEE-CCCeEEEEEcCC
Q 046394          146 ----------------M-------------LCHQGPVSALAFHPNGHLMATSG-KDCKIKIWDLRK  181 (378)
Q Consensus       146 ----------------~-------------~~h~~~v~~~~~sp~g~~l~t~~-~d~~i~iwd~~~  181 (378)
                                      +             ..-......+.++|||+++++++ .+.++.|+|++.
T Consensus       241 ~av~~Gk~~eingV~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~K  306 (459)
T d1fwxa2         241 KAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTR  306 (459)
T ss_dssp             HHHHHTCSEEETTEEEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGG
T ss_pred             HhhhcCCcEEeCCceeecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehh
Confidence                            0             11112235688999999977665 688999999964

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=96.96  E-value=0.026  Score=51.01  Aligned_cols=95  Identities=11%  Similarity=0.036  Sum_probs=61.9

Q ss_pred             cceeeeeecccceeeEEeecCC-------------------------------------CCc-eEEEEcCCCCEEEEEeC
Q 046394           24 EAIAREVDILSSRNQYDIMLPE-------------------------------------LGP-YTLDFTSSGRYMAAAGC   65 (378)
Q Consensus        24 ~~~i~~~d~~~~~~~~~l~~~~-------------------------------------~~v-~~~~~sp~g~~l~~~~~   65 (378)
                      .+.|..+|+.|++.++......                                     ..+ ..+++.+....++.+..
T Consensus       175 ~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg  254 (571)
T d2ad6a1         175 RGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSG  254 (571)
T ss_dssp             CCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECC
T ss_pred             cCcEEEEECCCCcEEEEEeccCCcccccccccccccccccCcccccccccCCcccccCCCccccccccchhcCeeeeecc
Confidence            5679999999999998765321                                     112 24566677766665544


Q ss_pred             C----------------CcEEEEe-CCCCeEEeeccCCC-----------e-eEEEE------EEEEEeCCCeEEEEEcC
Q 046394           66 K----------------GYPYFYN-RDGTELHCSKEHGE-----------V-LKLQF------LLASINKLGQLRYQNVT  110 (378)
Q Consensus        66 d----------------g~i~iwd-~~~~~~~~~~~~~~-----------~-~~l~~------~l~s~~~d~~i~iwd~~  110 (378)
                      +                ..+.-.| .+|+.+..++....           . ..+..      .++.++.+|.++++|..
T Consensus       255 ~~~p~~~~~r~g~n~~s~svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~  334 (571)
T d2ad6a1         255 NPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRE  334 (571)
T ss_dssp             CCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETT
T ss_pred             cccCccccccccccccccceeeeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecC
Confidence            2                3466667 56777766553221           1 12222      56788899999999999


Q ss_pred             CCcEEEEE
Q 046394          111 MGEIVGNF  118 (378)
Q Consensus       111 ~~~~~~~~  118 (378)
                      +|+.+...
T Consensus       335 tG~~i~~~  342 (571)
T d2ad6a1         335 NGNLIVAE  342 (571)
T ss_dssp             TCCEEEEE
T ss_pred             CCcEeeee
Confidence            99987654

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.43  E-value=0.15  Score=40.57  Aligned_cols=163  Identities=12%  Similarity=0.062  Sum_probs=97.8

Q ss_pred             EEeccceeeeeecccce-----eeEEeecCCCCceEEEEcCCCCEEEEEeC-CCcEEEEeCCCCeEEeec-c-CCCeeEE
Q 046394           20 RIKQEAIAREVDILSSR-----NQYDIMLPELGPYTLDFTSSGRYMAAAGC-KGYPYFYNRDGTELHCSK-E-HGEVLKL   91 (378)
Q Consensus        20 ~~~~~~~i~~~d~~~~~-----~~~~l~~~~~~v~~~~~sp~g~~l~~~~~-dg~i~iwd~~~~~~~~~~-~-~~~~~~l   91 (378)
                      .+.+.+.|+-.++....     ....+..+...+.+|+|.+..+.|+.... ++.|+..++++.....+. . ...+.++
T Consensus         5 l~s~~~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~i   84 (263)
T d1npea_           5 LFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGI   84 (263)
T ss_dssp             EEEEEEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEE
T ss_pred             EEeCCCeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEE
Confidence            34445555555554332     12223333345778999988887777644 567888887765544433 2 2345555


Q ss_pred             EE------EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcCC------------Ce----e-ee
Q 046394           92 QF------LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHSG------------GT----M-LC  148 (378)
Q Consensus        92 ~~------~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d------------~~----~-~~  148 (378)
                      ++      +..+-...+.|.+.++........+......+..++++|...+++.....            |.    + ..
T Consensus        85 AvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~  164 (263)
T d1npea_          85 ALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQD  164 (263)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECT
T ss_pred             EEeccCCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeee
Confidence            55      44555667899999987655433343444678899999877766543221            21    1 11


Q ss_pred             cCCCEEEEEEecCCCEEEEE-ECCCeEEEEEcCCc
Q 046394          149 HQGPVSALAFHPNGHLMATS-GKDCKIKIWDLRKY  182 (378)
Q Consensus       149 h~~~v~~~~~sp~g~~l~t~-~~d~~i~iwd~~~~  182 (378)
                      .-....++++.+.++.|.-+ ...+.|...|+...
T Consensus       165 ~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~  199 (263)
T d1npea_         165 NLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQP  199 (263)
T ss_dssp             TCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEE
T ss_pred             cccccceEEEeecCcEEEEEeCCCCEEEEEECCCC
Confidence            22355788888876666444 45678888887543

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.37  E-value=0.12  Score=46.59  Aligned_cols=96  Identities=8%  Similarity=0.013  Sum_probs=61.2

Q ss_pred             cceeeeeecccceeeEEeecCC-------------------------------------CCc-eEEEEcCCCCEEEEEeC
Q 046394           24 EAIAREVDILSSRNQYDIMLPE-------------------------------------LGP-YTLDFTSSGRYMAAAGC   65 (378)
Q Consensus        24 ~~~i~~~d~~~~~~~~~l~~~~-------------------------------------~~v-~~~~~sp~g~~l~~~~~   65 (378)
                      .+.|..+|+.|++.+..+....                                     ..+ ..+++.+...+++.+..
T Consensus       181 ~G~v~A~Da~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg  260 (596)
T d1w6sa_         181 RGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTG  260 (596)
T ss_dssp             CCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECC
T ss_pred             cCceEEEECCCCcEEEEeeccCCccccccccccccccccccccccccccCCCCceecCCCccccccccccCCCeeecccc
Confidence            3789999999999998765321                                     112 24566676666666543


Q ss_pred             C----------------CcEEEEe-CCCCeEEeeccCC-C---------eeEEEE---------EEEEEeCCCeEEEEEc
Q 046394           66 K----------------GYPYFYN-RDGTELHCSKEHG-E---------VLKLQF---------LLASINKLGQLRYQNV  109 (378)
Q Consensus        66 d----------------g~i~iwd-~~~~~~~~~~~~~-~---------~~~l~~---------~l~s~~~d~~i~iwd~  109 (378)
                      +                ..|.-.| .+|+.+..++... +         +..+..         .++.+..+|.+.++|-
T Consensus       261 ~~~p~~~~~r~g~n~ys~sivAlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr  340 (596)
T d1w6sa_         261 NPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDR  340 (596)
T ss_dssp             CCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEET
T ss_pred             cccccccccccccccccccccccccccccccccccceeccccCCccccceeeeeccccccccccceeccccccceeeecC
Confidence            3                2466677 5667666554321 1         111111         6778889999999999


Q ss_pred             CCCcEEEEEe
Q 046394          110 TMGEIVGNFW  119 (378)
Q Consensus       110 ~~~~~~~~~~  119 (378)
                      .+|+.+....
T Consensus       341 ~tG~~i~~~~  350 (596)
T d1w6sa_         341 TDGALVSANK  350 (596)
T ss_dssp             TTCCEEEEEE
T ss_pred             CCCceeeecc
Confidence            9999876543

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.30  E-value=0.19  Score=40.13  Aligned_cols=161  Identities=11%  Similarity=0.020  Sum_probs=95.5

Q ss_pred             EEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeC-CCcEEEEeCCCCe----EEe-eccC-CCeeEEE
Q 046394           20 RIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGC-KGYPYFYNRDGTE----LHC-SKEH-GEVLKLQ   92 (378)
Q Consensus        20 ~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~-dg~i~iwd~~~~~----~~~-~~~~-~~~~~l~   92 (378)
                      .+.+...|+-.++.+.... .+-.....+.+++|++..+.|+.... .+.|...++++..    ... +... ..+..++
T Consensus         5 l~s~~~~I~~~~l~~~~~~-~~~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glA   83 (266)
T d1ijqa1           5 FFTNRHEVRKMTLDRSEYT-SLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLA   83 (266)
T ss_dssp             EEECBSSEEEEETTSCCCE-EEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEE
T ss_pred             EEECCCeEEEEECCCCcce-eeeCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEE
Confidence            3445556777788765543 33334467889999998888777653 5567666654321    112 2221 2234555


Q ss_pred             E------EEEEEeCCCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEcC-----------CCe----ee-ecC
Q 046394           93 F------LLASINKLGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGHS-----------GGT----ML-CHQ  150 (378)
Q Consensus        93 ~------~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-----------d~~----~~-~h~  150 (378)
                      +      +..+-...+.|.+.++........+.........++++|...+++....           ||.    +. ..-
T Consensus        84 vD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~  163 (266)
T d1ijqa1          84 VDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENI  163 (266)
T ss_dssp             EETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSC
T ss_pred             EeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceeccccccc
Confidence            5      5556667789999999766655555555677888999886655544321           221    11 222


Q ss_pred             CCEEEEEEecCCCEEEEE-ECCCeEEEEEcCC
Q 046394          151 GPVSALAFHPNGHLMATS-GKDCKIKIWDLRK  181 (378)
Q Consensus       151 ~~v~~~~~sp~g~~l~t~-~~d~~i~iwd~~~  181 (378)
                      ....++++++.+..|.-+ +..+.|...|+..
T Consensus       164 ~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG  195 (266)
T d1ijqa1         164 QWPNGITLDLLSGRLYWVDSKLHSISSIDVNG  195 (266)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             ceeeEEEeeccccEEEEecCCcCEEEEEECCC
Confidence            456788888866655444 4566777777754

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=96.18  E-value=0.4  Score=42.78  Aligned_cols=102  Identities=10%  Similarity=0.060  Sum_probs=67.8

Q ss_pred             eeeEEEeccceeeeeecccceeeEEeecCCCC----------c-eEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeec
Q 046394           16 EKTWRIKQEAIAREVDILSSRNQYDIMLPELG----------P-YTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSK   83 (378)
Q Consensus        16 ~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~----------v-~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~   83 (378)
                      +..|..+.++.|..+|..|++.+..+......          + ..++..  +..++.+..++.|.-.| .+|..+....
T Consensus        67 g~vyv~t~~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~g~l~Alda~tG~~~w~~~  144 (560)
T d1kv9a2          67 GVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALW--GDKVYVGTLDGRLIALDAKTGKAIWSQQ  144 (560)
T ss_dssp             TEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEE--BTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             CEEEEECCCCeEEEEeCCCCCEEEEECCCCCccccccccccccccCccee--CCeEEEEeCCCEEEEEECCCCcEEeccC
Confidence            45666678899999999999999886432110          1 112222  34688888899999999 6888877664


Q ss_pred             cCCC-----e--eEEEE--EEEEEeC------CCeEEEEEcCCCcEEEEEe
Q 046394           84 EHGE-----V--LKLQF--LLASINK------LGQLRYQNVTMGEIVGNFW  119 (378)
Q Consensus        84 ~~~~-----~--~~l~~--~l~s~~~------d~~i~iwd~~~~~~~~~~~  119 (378)
                      ....     .  ..+.+  .++.++.      .|.|.-+|..+|+.+..+.
T Consensus       145 ~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~  195 (560)
T d1kv9a2         145 TTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFY  195 (560)
T ss_dssp             CSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred             ccCcccceeeeeeeeeecCcccccccceeccccceEEEEECCCceEEeeee
Confidence            3221     1  22233  4444332      3679999999999998875

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=96.17  E-value=0.22  Score=44.74  Aligned_cols=26  Identities=15%  Similarity=0.097  Sum_probs=22.1

Q ss_pred             EEEEEeCCCeEEEEEcCCCcEEEEEe
Q 046394           94 LLASINKLGQLRYQNVTMGEIVGNFW  119 (378)
Q Consensus        94 ~l~s~~~d~~i~iwd~~~~~~~~~~~  119 (378)
                      .++.++.+|.+.++|..+|+.+....
T Consensus       329 ~v~~~~k~G~l~~lDr~tGe~~~~~~  354 (573)
T d1kb0a2         329 VILHAPKNGFFFVLDRTNGKFISAKN  354 (573)
T ss_dssp             EEEECCTTSEEEEEETTTCCEEEEEE
T ss_pred             eeeeccccceeEEecccccccccccc
Confidence            67788899999999999999876554

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=96.16  E-value=0.13  Score=46.15  Aligned_cols=95  Identities=8%  Similarity=0.044  Sum_probs=59.2

Q ss_pred             ceeeeeecccceeeEEeecC------------------------------CCCce-EEEEcCCCCEEEEEeCC-------
Q 046394           25 AIAREVDILSSRNQYDIMLP------------------------------ELGPY-TLDFTSSGRYMAAAGCK-------   66 (378)
Q Consensus        25 ~~i~~~d~~~~~~~~~l~~~------------------------------~~~v~-~~~~sp~g~~l~~~~~d-------   66 (378)
                      +.|..+|+.|++.+..+..-                              ...+. .+++.|...+++.+..+       
T Consensus       178 G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~  257 (560)
T d1kv9a2         178 GFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNRE  257 (560)
T ss_dssp             CEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHH
T ss_pred             ceEEEEECCCceEEeeeeeccccccCCccccccccccccccccccccccCCCCcccccccccccCeeeecCCCCcccccc
Confidence            67999999999999887531                              11122 46667777666554321       


Q ss_pred             ------------CcEEEEe-CCCCeEEeeccCC-Ce-----------eEEEE------EEEEEeCCCeEEEEEcCCCcEE
Q 046394           67 ------------GYPYFYN-RDGTELHCSKEHG-EV-----------LKLQF------LLASINKLGQLRYQNVTMGEIV  115 (378)
Q Consensus        67 ------------g~i~iwd-~~~~~~~~~~~~~-~~-----------~~l~~------~l~s~~~d~~i~iwd~~~~~~~  115 (378)
                                  ..|.-.| .+|+....++... +.           ..+..      .++.++.+|.+.++|..+|+++
T Consensus       258 ~~~~~~g~n~~s~sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i  337 (560)
T d1kv9a2         258 VRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLI  337 (560)
T ss_dssp             HHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEE
T ss_pred             cccccCCccccceeeEEecCCccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCccc
Confidence                        2455566 4555554443321 11           11222      6777889999999999999987


Q ss_pred             EEEe
Q 046394          116 GNFW  119 (378)
Q Consensus       116 ~~~~  119 (378)
                      ....
T Consensus       338 ~~~~  341 (560)
T d1kv9a2         338 SAEK  341 (560)
T ss_dssp             EEEE
T ss_pred             cccc
Confidence            6554

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.95  E-value=0.3  Score=39.27  Aligned_cols=168  Identities=11%  Similarity=0.112  Sum_probs=100.9

Q ss_pred             eeeEEEeccceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEeCCC--CeEEeeccCCCe---eE
Q 046394           16 EKTWRIKQEAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYNRDG--TELHCSKEHGEV---LK   90 (378)
Q Consensus        16 ~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~---~~   90 (378)
                      .+.+.+.....++++|+++.+++...... ..|.=..|-.+. .|+..+ +..|+=|+++|  .+...+.-|...   .-
T Consensus        74 ~~IiALrag~~LQiFnletK~klks~~~~-e~VvfWkWis~~-~L~lVT-~taVYHW~~~g~s~P~k~fdR~~~L~~~QI  150 (327)
T d1utca2          74 SKVIALKAGKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQI  150 (327)
T ss_dssp             SSEEEEEETTEEEEEETTTTEEEEEEECS-SCCCEEEESSSS-EEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEE
T ss_pred             CcEEEEecCCeEEEEehhHhhhhceEEcC-CCcEEEEecCCC-EEEEEc-CCceEEEcccCCCCchhhhhhcccccCceE
Confidence            35566666888999999999999888886 567777786554 455443 34799999744  566666665532   22


Q ss_pred             EEE--------EEEEE--eC----CCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCC---CEEEEEcC-----------
Q 046394           91 LQF--------LLASI--NK----LGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFN---GVVSLGHS-----------  142 (378)
Q Consensus        91 l~~--------~l~s~--~~----d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~---~~l~~~~~-----------  142 (378)
                      +.|        ++++|  ..    .|.+.+|..+.. ..+.+.+|.+....+.+.-+.   ++|+.+..           
T Consensus       151 InY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiE  229 (327)
T d1utca2         151 INYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIE  229 (327)
T ss_dssp             EEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEE
T ss_pred             EEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccC-cCccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEE
Confidence            333        22222  22    367789988653 334454443332222222111   12222211           


Q ss_pred             -----CCe----------ee---ecCCCEEEEEEecCCCEEEEEECCCeEEEEEcCCceeeee
Q 046394          143 -----GGT----------ML---CHQGPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEVLQT  187 (378)
Q Consensus       143 -----d~~----------~~---~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~~~~  187 (378)
                           .+.          +.   .-.+-..+|.+|+.-..+...+.-|.|.+||+.++.++..
T Consensus       230 ig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i~~  292 (327)
T d1utca2         230 VGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYM  292 (327)
T ss_dssp             CSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             cCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccccEEEE
Confidence                 111          00   1123356788888777888899999999999999887654

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=95.24  E-value=0.95  Score=40.32  Aligned_cols=103  Identities=9%  Similarity=0.022  Sum_probs=67.3

Q ss_pred             eeeEEEeccceeeeeecccceeeEEeecCCC----------Cc-eEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeec
Q 046394           16 EKTWRIKQEAIAREVDILSSRNQYDIMLPEL----------GP-YTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSK   83 (378)
Q Consensus        16 ~~~~~~~~~~~i~~~d~~~~~~~~~l~~~~~----------~v-~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~   83 (378)
                      +..|....++.|..+|..|++.+..+.....          .+ ..+.+.  +..++.++.|+.+.-.| .+|..+....
T Consensus        78 g~vyv~t~~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~v~~~t~~g~l~alda~tG~~~W~~~  155 (573)
T d1kb0a2          78 GIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALW--KGKVYVGAWDGRLIALDAATGKEVWHQN  155 (573)
T ss_dssp             TEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             CEEEEECCCCeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEE--CCcEEEEecccceeeeccccccceeccc
Confidence            4566667789999999999999988753211          11 122332  23577778899998889 6777776543


Q ss_pred             cC--C-C---e--eEEEE--EEEEEeC------CCeEEEEEcCCCcEEEEEec
Q 046394           84 EH--G-E---V--LKLQF--LLASINK------LGQLRYQNVTMGEIVGNFWT  120 (378)
Q Consensus        84 ~~--~-~---~--~~l~~--~l~s~~~------d~~i~iwd~~~~~~~~~~~~  120 (378)
                      ..  . .   .  ..+.+  .++.++.      .|.|..+|..+|+.+..+..
T Consensus       156 ~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t  208 (573)
T d1kb0a2         156 TFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFS  208 (573)
T ss_dssp             TTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred             CccCCcceEEeecceEEEeccEEEeeccccccccceEEEEecCCccceeeeee
Confidence            21  1 1   1  22334  5555432      46899999999999887643

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.18  E-value=0.35  Score=40.60  Aligned_cols=119  Identities=8%  Similarity=0.027  Sum_probs=74.2

Q ss_pred             CceEEEEcCCCCEEEEEeCCCcEEEEeCCC-CeEEeeccCCC-eeEEEE---EEEEEeCCCeEEEEEcCCCcEEEEEe--
Q 046394           47 GPYTLDFTSSGRYMAAAGCKGYPYFYNRDG-TELHCSKEHGE-VLKLQF---LLASINKLGQLRYQNVTMGEIVGNFW--  119 (378)
Q Consensus        47 ~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~-~~~l~~---~l~s~~~d~~i~iwd~~~~~~~~~~~--  119 (378)
                      .|..++|+.+  .|++. .++.+..++... ........-.. ...+.+   .++....++.+.++++..+.......  
T Consensus        88 ~v~~vafs~d--~l~v~-~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~~~l~~~~~~~~~~~v  164 (381)
T d1xipa_          88 DVIFVCFHGD--QVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNNTLVILNSVNDLSALDLRTKSTKQLAQNV  164 (381)
T ss_dssp             TEEEEEEETT--EEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEESE
T ss_pred             CeEEEEeeCC--EEEEE-eCCCEEEEEeeccccccccccccccccceecCCceeEEEecCCCEEEEEeccCccccccCCc
Confidence            5888999754  55555 345677777322 22222222222 356666   66667778999999998876432211  


Q ss_pred             ---cCCCCeeEEEEcCCCCEEEEEcCCCe-----------e---eecCCCEEEEEEecCCCEEEEE
Q 046394          120 ---TGLGRTDVIRVNPFNGVVSLGHSGGT-----------M---LCHQGPVSALAFHPNGHLMATS  168 (378)
Q Consensus       120 ---~~~~~v~~~~~s~~~~~l~~~~~d~~-----------~---~~h~~~v~~~~~sp~g~~l~t~  168 (378)
                         .-.+.+.+++|++.|..++++..+..           +   ......|.+|.|-.+..++++-
T Consensus       165 ~~~~~~~~~~~v~ws~kgkq~v~~~g~~~q~k~~i~~~~~~~~p~~~~~~v~sI~WL~~~~F~vvy  230 (381)
T d1xipa_         165 TSFDVTNSQLAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF  230 (381)
T ss_dssp             EEEEECSSEEEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             ceEEecCCceEEEEeCCcEEEEEeCCCceeeccCCCCccccCCCcCCCcceeEEEEecCceEEEEE
Confidence               12367899999999988888754433           1   1234568899998766665544

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=95.08  E-value=0.72  Score=38.04  Aligned_cols=153  Identities=10%  Similarity=0.064  Sum_probs=87.0

Q ss_pred             CceEEEEcCCCCEEEEEeC------------CCcEEEEeCCCC--eEEee--ccC------CCeeEEEE--------EEE
Q 046394           47 GPYTLDFTSSGRYMAAAGC------------KGYPYFYNRDGT--ELHCS--KEH------GEVLKLQF--------LLA   96 (378)
Q Consensus        47 ~v~~~~~sp~g~~l~~~~~------------dg~i~iwd~~~~--~~~~~--~~~------~~~~~l~~--------~l~   96 (378)
                      +.-.|+..|+|..+++++.            .|.|.++|+...  ....+  .+.      -.+..+..        +|+
T Consensus        36 G~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~  115 (340)
T d1v04a_          36 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL  115 (340)
T ss_dssp             CCCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEE
T ss_pred             CcceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEE
Confidence            5567888899876666532            488999995332  12222  111      12344443        344


Q ss_pred             EEe---CCCeEEEEEcCCCc--E--EEEEec-CCCCeeEEEEcCCCCEEEEEcCCCe-----------------------
Q 046394           97 SIN---KLGQLRYQNVTMGE--I--VGNFWT-GLGRTDVIRVNPFNGVVSLGHSGGT-----------------------  145 (378)
Q Consensus        97 s~~---~d~~i~iwd~~~~~--~--~~~~~~-~~~~v~~~~~s~~~~~l~~~~~d~~-----------------------  145 (378)
                      +..   ...+|.+|++....  .  +.++.. ....++.+++..++.++++-.....                       
T Consensus       116 vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~  195 (340)
T d1v04a_         116 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP  195 (340)
T ss_dssp             EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECS
T ss_pred             EEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcC
Confidence            432   45678888875432  1  222222 2355789999999988887422111                       


Q ss_pred             -----eeecCCCEEEEEEecCCCEEEEE-ECCCeEEEEEcCCceee---eee--cCCceEEEEec
Q 046394          146 -----MLCHQGPVSALAFHPNGHLMATS-GKDCKIKIWDLRKYEVL---QTL--PGHAKTLDFSR  199 (378)
Q Consensus       146 -----~~~h~~~v~~~~~sp~g~~l~t~-~~d~~i~iwd~~~~~~~---~~~--~~~i~~~~~sp  199 (378)
                           ....-...+.|+++|++++|+.+ +..+.|++|++.....+   ..+  +..+-.+.+.+
T Consensus       196 ~~~~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~  260 (340)
T d1v04a_         196 NDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDP  260 (340)
T ss_dssp             SCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECT
T ss_pred             CceEEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEec
Confidence                 11122346789999999876544 56778999998643222   222  45556666654

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.96  E-value=0.64  Score=36.76  Aligned_cols=164  Identities=12%  Similarity=-0.025  Sum_probs=94.9

Q ss_pred             cceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEe-CCCcEEEEeCCCCeEEeeccC--CCeeEEEE------E
Q 046394           24 EAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAG-CKGYPYFYNRDGTELHCSKEH--GEVLKLQF------L   94 (378)
Q Consensus        24 ~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~-~dg~i~iwd~~~~~~~~~~~~--~~~~~l~~------~   94 (378)
                      .+.|...++........+......+.++++..-+..|+.+. ..+.|.+.++++.....+...  ..+..+++      +
T Consensus        57 ~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~l  136 (263)
T d1npea_          57 EPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNL  136 (263)
T ss_dssp             TTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEE
T ss_pred             CCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcE
Confidence            45666666655544333433335788999987666666554 467899999887655444332  23466666      3


Q ss_pred             EEEEeC--CCeEEEEEcCCCcEEEEEecCCCCeeEEEEcCCCCEEEEEc-CCCe-------------eeecCCCEEEEEE
Q 046394           95 LASINK--LGQLRYQNVTMGEIVGNFWTGLGRTDVIRVNPFNGVVSLGH-SGGT-------------MLCHQGPVSALAF  158 (378)
Q Consensus        95 l~s~~~--d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~-------------~~~h~~~v~~~~~  158 (378)
                      +.+-..  ...|.--++............-..+..+++++.+..|+.+. ..+.             +........+|++
T Consensus       137 y~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~~~P~~lav  216 (263)
T d1npea_         137 YWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTS  216 (263)
T ss_dssp             EEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEE
T ss_pred             EEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECCCCCcEEEEE
Confidence            333322  22344445543333333333345678999998887665553 3333             1111223456777


Q ss_pred             ecCCCEEEEEECCCeEEEEEcCCceeeeee
Q 046394          159 HPNGHLMATSGKDCKIKIWDLRKYEVLQTL  188 (378)
Q Consensus       159 sp~g~~l~t~~~d~~i~iwd~~~~~~~~~~  188 (378)
                      . ++.++.|-...+.|...|..+++.+..+
T Consensus       217 ~-~~~lYwtd~~~~~I~~~~~~~g~~~~~~  245 (263)
T d1npea_         217 Y-GKNLYYTDWKTNSVIAMDLAISKEMDTF  245 (263)
T ss_dssp             E-TTEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             E-CCEEEEEECCCCEEEEEECCCCccceEE
Confidence            5 3444455556778888888888776655

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=94.77  E-value=0.92  Score=37.67  Aligned_cols=56  Identities=14%  Similarity=-0.003  Sum_probs=35.5

Q ss_pred             cceeeeeecccceeeEEeecCC-CCceEEEEcCCCCEEEEEeCC------CcEEEEeCCCCeE
Q 046394           24 EAIAREVDILSSRNQYDIMLPE-LGPYTLDFTSSGRYMAAAGCK------GYPYFYNRDGTEL   79 (378)
Q Consensus        24 ~~~i~~~d~~~~~~~~~l~~~~-~~v~~~~~sp~g~~l~~~~~d------g~i~iwd~~~~~~   79 (378)
                      ...+.+||..+..-...-.... ..-.+++..+||+.++.|+.+      ..+.+||.....-
T Consensus        97 ~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W  159 (387)
T d1k3ia3          97 AKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTW  159 (387)
T ss_dssp             TTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEE
T ss_pred             CcceeEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCce
Confidence            3577889988776543222211 123467778899998888753      3689999655443

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=94.43  E-value=0.67  Score=41.34  Aligned_cols=46  Identities=15%  Similarity=0.010  Sum_probs=32.1

Q ss_pred             EEEEEeCCCeEEEEEcCCCcEEEEEecCCC-CeeEEEEcCCCC-EEEE
Q 046394           94 LLASINKLGQLRYQNVTMGEIVGNFWTGLG-RTDVIRVNPFNG-VVSL  139 (378)
Q Consensus        94 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~~~-~l~~  139 (378)
                      ++++++.|+.++.+|.++|+.+.++..... .-..+.|..+|+ ++++
T Consensus       477 lVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGkqYi~v  524 (571)
T d2ad6a1         477 LVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIGS  524 (571)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred             EEEEECCCCeEEEEECCCCcEEEEEECCCCceecceEEEECCEEEEEE
Confidence            677789999999999999999988875432 222355555663 4433

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=93.55  E-value=1.8  Score=36.52  Aligned_cols=78  Identities=8%  Similarity=-0.006  Sum_probs=52.8

Q ss_pred             EEEEEeCCCeEEEEEcCCCcEEEEEec-CCCCeeEEEEcCC--CCEEEEEcCCCe-------------------------
Q 046394           94 LLASINKLGQLRYQNVTMGEIVGNFWT-GLGRTDVIRVNPF--NGVVSLGHSGGT-------------------------  145 (378)
Q Consensus        94 ~l~s~~~d~~i~iwd~~~~~~~~~~~~-~~~~v~~~~~s~~--~~~l~~~~~d~~-------------------------  145 (378)
                      +++.-..++.|.+.|+.+.++...+.. ....+..++..++  ..+++.++....                         
T Consensus       102 lFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~ID~~  181 (459)
T d1fwxa2         102 LFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDAD  181 (459)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEEEETT
T ss_pred             EEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEEEEecC
Confidence            677777899999999999988665543 2345666776654  457777666443                         


Q ss_pred             ------eeecCCCEEEEEEecCCCEEEEEECC
Q 046394          146 ------MLCHQGPVSALAFHPNGHLMATSGKD  171 (378)
Q Consensus       146 ------~~~h~~~v~~~~~sp~g~~l~t~~~d  171 (378)
                            ...-.+....++++|+|+++++.+.+
T Consensus       182 tm~V~~QV~V~g~ld~~~~s~dGK~af~TsyN  213 (459)
T d1fwxa2         182 KWEVAWQVLVSGNLDNCDADYEGKWAFSTSYN  213 (459)
T ss_dssp             TTEEEEEEEESSCCCCEEECSSSSEEEEEESC
T ss_pred             CceEEEEeeeCCChhccccCCCCCEEEEEecc
Confidence                  00112334568899999998887743

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.39  E-value=1.5  Score=35.07  Aligned_cols=71  Identities=8%  Similarity=0.024  Sum_probs=44.2

Q ss_pred             eeEEEeccceeeeeecccc-eeeEEeecCC----CCceEEEEcCCCCEEEEEeC-------CCcEEEEeCCCCeEEeecc
Q 046394           17 KTWRIKQEAIAREVDILSS-RNQYDIMLPE----LGPYTLDFTSSGRYMAAAGC-------KGYPYFYNRDGTELHCSKE   84 (378)
Q Consensus        17 ~~~~~~~~~~i~~~d~~~~-~~~~~l~~~~----~~v~~~~~sp~g~~l~~~~~-------dg~i~iwd~~~~~~~~~~~   84 (378)
                      .++.+-.+..|+-|+++.. .+...+..|.    .-|..-..++++++++..|-       .|.+.+|..+....+.+.+
T Consensus       114 ~~L~lVT~taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~sQ~ieG  193 (327)
T d1utca2         114 NTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEG  193 (327)
T ss_dssp             SEEEEECSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEEEECC
T ss_pred             CEEEEEcCCceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCcCccccc
Confidence            3444555677888998432 3445555543    23567777888887664322       4678888876666666666


Q ss_pred             CCC
Q 046394           85 HGE   87 (378)
Q Consensus        85 ~~~   87 (378)
                      |.+
T Consensus       194 haa  196 (327)
T d1utca2         194 HAA  196 (327)
T ss_dssp             SEE
T ss_pred             eee
Confidence            544

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=92.93  E-value=2.3  Score=36.00  Aligned_cols=93  Identities=13%  Similarity=0.035  Sum_probs=53.2

Q ss_pred             ceEEEEcCCCCEEEEEeC-CC----cEEEEeCCCCeEE--eeccCCCeeEEEE------EEEEEe---------------
Q 046394           48 PYTLDFTSSGRYMAAAGC-KG----YPYFYNRDGTELH--CSKEHGEVLKLQF------LLASIN---------------   99 (378)
Q Consensus        48 v~~~~~sp~g~~l~~~~~-dg----~i~iwd~~~~~~~--~~~~~~~~~~l~~------~l~s~~---------------   99 (378)
                      +..+++|||++++|.+-. +|    .|+++|+.+....  .+.. .....+.|      ++.+.-               
T Consensus       127 ~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~-~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~  205 (430)
T d1qfma1         127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTN  205 (430)
T ss_dssp             EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCC
T ss_pred             ecceEecCCCCEEEEEeccccCchheeEEeccCcceeccccccc-ccccceEEcCCCCEEEEEEeccccCcccccccccC
Confidence            446788999998885533 33    6899995544332  2221 11145666      333321               


Q ss_pred             CCCeEEEEEcCCCc--EEEEEecCC--CCeeEEEEcCCCCEEEEEc
Q 046394          100 KLGQLRYQNVTMGE--IVGNFWTGL--GRTDVIRVNPFNGVVSLGH  141 (378)
Q Consensus       100 ~d~~i~iwd~~~~~--~~~~~~~~~--~~v~~~~~s~~~~~l~~~~  141 (378)
                      ....|..+.+.+..  .+..+....  ..+..+..++++.+++...
T Consensus       206 ~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~  251 (430)
T d1qfma1         206 LHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSI  251 (430)
T ss_dssp             CCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEE
T ss_pred             CcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEe
Confidence            12357778877653  233443332  3456677899999876543

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=92.86  E-value=0.22  Score=42.85  Aligned_cols=53  Identities=17%  Similarity=0.270  Sum_probs=37.8

Q ss_pred             EEEEEEecCCCEEEE-EECCC----eEEEEEcCCceeeeee--cCCceEEEEecCCCccc
Q 046394          153 VSALAFHPNGHLMAT-SGKDC----KIKIWDLRKYEVLQTL--PGHAKTLDFSRKDSGDF  205 (378)
Q Consensus       153 v~~~~~sp~g~~l~t-~~~d~----~i~iwd~~~~~~~~~~--~~~i~~~~~sp~g~~~~  205 (378)
                      +..+++||+++++|. .+.+|    .|+++|+.+++.+...  ......++|++|+...+
T Consensus       127 ~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~~~~~~~~W~~D~~~~~  186 (430)
T d1qfma1         127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMF  186 (430)
T ss_dssp             EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEE
T ss_pred             ecceEecCCCCEEEEEeccccCchheeEEeccCcceecccccccccccceEEcCCCCEEE
Confidence            345678999998774 33333    7999999999886533  33457889999998643

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.02  E-value=3.8  Score=36.29  Aligned_cols=26  Identities=15%  Similarity=0.170  Sum_probs=21.3

Q ss_pred             EEEEEeCCCeEEEEEcCCCcEEEEEe
Q 046394           94 LLASINKLGQLRYQNVTMGEIVGNFW  119 (378)
Q Consensus        94 ~l~s~~~d~~i~iwd~~~~~~~~~~~  119 (378)
                      .++..+.++.++++|-.+|+.+....
T Consensus       338 ~v~~~~k~g~~~vldr~tG~~i~~~~  363 (582)
T d1flga_         338 ATAHADRNGFFYVVDRSNGKLQNAFP  363 (582)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             eeEeecccccEEeecccCCccccccc
Confidence            56777889999999999998876554

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=91.04  E-value=3.4  Score=33.87  Aligned_cols=124  Identities=8%  Similarity=0.057  Sum_probs=70.6

Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCCeEEeeccCCCee--EEE----E-----EEEEEe-C-C--CeEEEEEcCC-CcEEEEE
Q 046394           55 SSGRYMAAAGCKGYPYFYNRDGTELHCSKEHGEVL--KLQ----F-----LLASIN-K-L--GQLRYQNVTM-GEIVGNF  118 (378)
Q Consensus        55 p~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--~l~----~-----~l~s~~-~-d--~~i~iwd~~~-~~~~~~~  118 (378)
                      |+..+|+.....+-|++||++|+.+..+... ..+  .+.    +     .++.++ . +  .+|.+|.+.. ...+..+
T Consensus        38 p~~SlI~gTdK~~Gl~vYdL~G~~l~~~~~G-r~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~~  116 (353)
T d1h6la_          38 PQNSKLITTNKKSGLAVYSLEGKMLHSYHTG-KLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSI  116 (353)
T ss_dssp             GGGCEEEEEETTSCCEEEETTCCEEEECCSS-CEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEEC
T ss_pred             cCccEEEEEcCcCCEEEEcCCCcEEEecccC-CcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccccc
Confidence            3456777777777799999999998877532 222  222    1     233333 2 2  3688887753 3334443


Q ss_pred             ecC-------CCCeeEEEE--cCC-CC-EEEEEcCCCe--------------------eeecCCCEEEEEEecCCCEEEE
Q 046394          119 WTG-------LGRTDVIRV--NPF-NG-VVSLGHSGGT--------------------MLCHQGPVSALAFHPNGHLMAT  167 (378)
Q Consensus       119 ~~~-------~~~v~~~~~--s~~-~~-~l~~~~~d~~--------------------~~~h~~~v~~~~~sp~g~~l~t  167 (378)
                      ...       ...+..+|+  ++. |. ++++....|.                    ...-...+..|.+.+....|..
T Consensus       117 ~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~EGCVvDde~~~Lyi  196 (353)
T d1h6la_         117 TDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNSQTEGMAADDEYGSLYI  196 (353)
T ss_dssp             SCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSSCEEEEEEETTTTEEEE
T ss_pred             cccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCCCccceEEEeCCCCcEEE
Confidence            321       123556665  664 33 4455555554                    1112345667778877777777


Q ss_pred             EECCCeEEEEEc
Q 046394          168 SGKDCKIKIWDL  179 (378)
Q Consensus       168 ~~~d~~i~iwd~  179 (378)
                      +-.+.-|..++.
T Consensus       197 sEE~~Giw~~~a  208 (353)
T d1h6la_         197 AEEDEAIWKFSA  208 (353)
T ss_dssp             EETTTEEEEEES
T ss_pred             ecCccceEEEEe
Confidence            777665555554

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.22  E-value=0.76  Score=41.09  Aligned_cols=69  Identities=13%  Similarity=0.186  Sum_probs=51.0

Q ss_pred             cceeeeeecccceeeEEeecCCCCceEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEeeccCCCe--eEEEE
Q 046394           24 EAIAREVDILSSRNQYDIMLPELGPYTLDFTSSGRYMAAAGCKGYPYFYN-RDGTELHCSKEHGEV--LKLQF   93 (378)
Q Consensus        24 ~~~i~~~d~~~~~~~~~l~~~~~~v~~~~~sp~g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~--~~l~~   93 (378)
                      .+.+..+|+.+++..+....+. ++.+-..+..|.++++|+.||.++.+| .+|+.+..+.-....  .-+.|
T Consensus       465 ~G~l~AiD~~TG~i~W~~~~~~-p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty  536 (582)
T d1flga_         465 VGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITW  536 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEE
T ss_pred             CCeEEEEcCCCCcEEeecCCCC-CCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEE
Confidence            3678999999999999887653 333222334567888899999999999 789999888765543  44555

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=90.20  E-value=4.8  Score=34.24  Aligned_cols=32  Identities=13%  Similarity=0.075  Sum_probs=25.5

Q ss_pred             CCceEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 046394           46 LGPYTLDFTSSGRYMAAAGCKGYPYFYNRDGT   77 (378)
Q Consensus        46 ~~v~~~~~sp~g~~l~~~~~dg~i~iwd~~~~   77 (378)
                      ..+++|+|.|||+.|++--..|.|++++..+.
T Consensus        27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g   58 (450)
T d1crua_          27 NKPHALLWGPDNQIWLTERATGKILRVNPESG   58 (450)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTC
T ss_pred             CCceEEEEeCCCeEEEEEecCCEEEEEECCCC
Confidence            57889999999998777645799999985443

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.60  E-value=3.7  Score=32.05  Aligned_cols=142  Identities=10%  Similarity=-0.010  Sum_probs=79.7

Q ss_pred             CCceEEEEcCCCCEEEEEe-CCCcEEEEeCCCCeEEee-ccC-CCeeEEEE------EEEE-EeCCCeEEEEEcCCCcEE
Q 046394           46 LGPYTLDFTSSGRYMAAAG-CKGYPYFYNRDGTELHCS-KEH-GEVLKLQF------LLAS-INKLGQLRYQNVTMGEIV  115 (378)
Q Consensus        46 ~~v~~~~~sp~g~~l~~~~-~dg~i~iwd~~~~~~~~~-~~~-~~~~~l~~------~l~s-~~~d~~i~iwd~~~~~~~  115 (378)
                      ..+.+|++.+.+..|+.+. ..+.|.+.+.+|.....+ ... ..+..+++      ++.+ .+..+.|.-.++......
T Consensus        77 ~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~  156 (266)
T d1ijqa1          77 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY  156 (266)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEE
T ss_pred             CCcceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCcee
Confidence            4567889887676666654 466899999887765443 222 23466666      3333 234456777777544433


Q ss_pred             EEEecCCCCeeEEEEcCCCCEEEEEcC-CCe--------------eeec--CCCEEEEEEecCCCEEEEEECCCeEEEEE
Q 046394          116 GNFWTGLGRTDVIRVNPFNGVVSLGHS-GGT--------------MLCH--QGPVSALAFHPNGHLMATSGKDCKIKIWD  178 (378)
Q Consensus       116 ~~~~~~~~~v~~~~~s~~~~~l~~~~~-d~~--------------~~~h--~~~v~~~~~sp~g~~l~t~~~d~~i~iwd  178 (378)
                      ......-..++.+++++.+..|+.+.. .+.              ....  .....+|++. ++..+.+-..++.|...+
T Consensus       157 ~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~-~~~ly~td~~~~~I~~~~  235 (266)
T d1ijqa1         157 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSAN  235 (266)
T ss_dssp             EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEE
T ss_pred             cccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE-CCEEEEEECCCCeEEEEE
Confidence            333334466789999998876655432 233              1111  1223455555 233444444566676666


Q ss_pred             cCCceeeeee
Q 046394          179 LRKYEVLQTL  188 (378)
Q Consensus       179 ~~~~~~~~~~  188 (378)
                      ..++.....+
T Consensus       236 ~~~g~~~~~~  245 (266)
T d1ijqa1         236 RLTGSDVNLL  245 (266)
T ss_dssp             TTTCCCCEEE
T ss_pred             CCCCcceEEE
Confidence            6665544433

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=89.41  E-value=6.7  Score=34.73  Aligned_cols=96  Identities=10%  Similarity=-0.001  Sum_probs=62.0

Q ss_pred             cceeeeeec-ccceeeEEeecCCC----------Cc-eEEEEcCC----CCEEEEEeCCCcEEEEe-CCCCeEEeeccCC
Q 046394           24 EAIAREVDI-LSSRNQYDIMLPEL----------GP-YTLDFTSS----GRYMAAAGCKGYPYFYN-RDGTELHCSKEHG   86 (378)
Q Consensus        24 ~~~i~~~d~-~~~~~~~~l~~~~~----------~v-~~~~~sp~----g~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~   86 (378)
                      .+.+...|. .+++.+..+.....          .+ ..+++.++    +..|+.++.|+.|.-.| .+|+.+..+....
T Consensus        72 ~~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~~~~~RGv~~~~~~~~~~~~v~~~t~dg~l~Alda~tG~~~w~~~~~d  151 (596)
T d1w6sa_          72 PNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVENSD  151 (596)
T ss_dssp             TTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEECCC
T ss_pred             CCcEEEEeCCCCCCEEEEecCCCCcccccccccccccceeEEecCCCCCceEEEEEeCCCCeEeeccccCceeccccccc
Confidence            456666776 57888887653211          11 24555443    24688888999999999 6788877664221


Q ss_pred             -----Ce--eEEEE--EEEEEeC------CCeEEEEEcCCCcEEEEEe
Q 046394           87 -----EV--LKLQF--LLASINK------LGQLRYQNVTMGEIVGNFW  119 (378)
Q Consensus        87 -----~~--~~l~~--~l~s~~~------d~~i~iwd~~~~~~~~~~~  119 (378)
                           ..  .-+.+  .++.+..      .|.|.-+|+.+|+.+..+.
T Consensus       152 ~~~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~  199 (596)
T d1w6sa_         152 IKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAY  199 (596)
T ss_dssp             GGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred             cccccccccCCcEECCeEEEeeccccccccCceEEEECCCCcEEEEee
Confidence                 12  22333  5555443      4899999999999998765

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=87.73  E-value=4.3  Score=30.50  Aligned_cols=30  Identities=20%  Similarity=0.309  Sum_probs=25.0

Q ss_pred             cceeeeEEcCCCCeEEEecCCCeEEEEEcC
Q 046394          223 YQIGKVSFRPYEDVLGIGHSMGVSGILIPG  252 (378)
Q Consensus       223 ~~v~~~~~sp~g~~l~~~~~~g~~~~~~~~  252 (378)
                      ..|+-+-+.|++++++.+-.||...+|+-|
T Consensus       238 ~~I~~~~Y~Pdd~L~iiakrdG~s~lF~nG  267 (313)
T d2hu7a1         238 TAITWLGYLPDGRLAVVARREGRSAVFIDG  267 (313)
T ss_dssp             SEEEEEEECTTSCEEEEEEETTEEEEEETT
T ss_pred             eEEEeeeeCCCCcEEEEEecCCchheeecc
Confidence            346667799999999999999999888754

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.24  E-value=7.9  Score=31.97  Aligned_cols=75  Identities=11%  Similarity=0.073  Sum_probs=44.7

Q ss_pred             CCeeEEEEcCCCCEEEEEcCCCe----------------------eeecCCCEEEEEEecCCCEEEEEECCCeEEEEEcC
Q 046394          123 GRTDVIRVNPFNGVVSLGHSGGT----------------------MLCHQGPVSALAFHPNGHLMATSGKDCKIKIWDLR  180 (378)
Q Consensus       123 ~~v~~~~~s~~~~~l~~~~~d~~----------------------~~~h~~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~  180 (378)
                      ...+-+++++...++++|+.++.                      ....-..|..++|+.+  .|+.. .++.+..++..
T Consensus        37 ~~~~LLAVsn~~GLl~aa~~~~l~V~~t~~l~~~~~~~~~~~~~~~~~~ip~v~~vafs~d--~l~v~-~~~~l~~~~~~  113 (381)
T d1xipa_          37 ASLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKEIPDVIFVCFHGD--QVLVS-TRNALYSLDLE  113 (381)
T ss_dssp             SCCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEECTTEEEEEEETT--EEEEE-ESSEEEEEESS
T ss_pred             cccceEEEeCCCCEEEEECCCEEEEEEHHHHHHHhhccCCCCcceeccCCCCeEEEEeeCC--EEEEE-eCCCEEEEEee
Confidence            45667888888888887777766                      1111235788889754  44444 45567777776


Q ss_pred             Cceeeee---ecCCceEEEEecC
Q 046394          181 KYEVLQT---LPGHAKTLDFSRK  200 (378)
Q Consensus       181 ~~~~~~~---~~~~i~~~~~sp~  200 (378)
                      +......   +..++..+.++|.
T Consensus       114 ~l~~~~~~~~~~~~~~~~~~~p~  136 (381)
T d1xipa_         114 ELSEFRTVTSFEKPVFQLKNVNN  136 (381)
T ss_dssp             STTCEEEEEECSSCEEEEEECSS
T ss_pred             ccccccccccccccccceecCCc
Confidence            5332222   2345566666554

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=85.33  E-value=3.6  Score=35.10  Aligned_cols=50  Identities=16%  Similarity=0.136  Sum_probs=33.3

Q ss_pred             CCEEEEEEecCCCEEEEEECCCeEEEEEcCCcee--eeee---------cCCceEEEEecC
Q 046394          151 GPVSALAFHPNGHLMATSGKDCKIKIWDLRKYEV--LQTL---------PGHAKTLDFSRK  200 (378)
Q Consensus       151 ~~v~~~~~sp~g~~l~t~~~d~~i~iwd~~~~~~--~~~~---------~~~i~~~~~sp~  200 (378)
                      ...++|+|.|+|++|++--.+|.|++++..++..  +..+         ......|+|+|+
T Consensus        27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            3457888888888777665578888888766543  2222         134467888885

>d1dlpa1 b.78.1.1 (A:1-115) Fetuin-binding protein Scafet precursor {Bluebell (Scilla campanulata) [TaxId: 81759]}

class: All beta proteins
fold: beta-Prism II
superfamily: alpha-D-mannose-specific plant lectins
family: alpha-D-mannose-specific plant lectins
domain: Fetuin-binding protein Scafet precursor
species: Bluebell (Scilla campanulata) [TaxId: 81759]

Probab=82.34  E-value=4.5  Score=26.92  Aligned_cols=48  Identities=8%  Similarity=-0.102  Sum_probs=23.6

Q ss_pred             CceEEEEecCCCccccCCCCCceEEEeeccCCcceeeeEEcCCCCeEEE
Q 046394          191 HAKTLDFSRKDSGDFSGSHNYNRYMGYSMVKGYQIGKVSFRPYEDVLGI  239 (378)
Q Consensus       191 ~i~~~~~sp~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~  239 (378)
                      ....+.+.++|...+.+............ ....-+.+.+.+||.+++.
T Consensus        56 ~~~~l~l~~dGNLvl~d~~~~~vWsS~t~-~~~g~y~l~Lq~DGNlvlY  103 (115)
T d1dlpa1          56 TGCRAVLQSDGLLVILTAQNTIRWSSGTK-GSIGNYVLVLQPDRTVTIY  103 (115)
T ss_dssp             SCCBCCBCSSSCBCCBCTTTCCSCCCCCC-CCSSCCEEEECSSSCEEEE
T ss_pred             CceEEEEeccCCEEEEccCCCEEEEcCCC-CCCCCEEEEECCCCcEEEe
Confidence            34566677778776665433222211111 1122234566777765554