Citrus Sinensis ID: 046397

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-
MLEFRRNLPAYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGESVGYKVRLEGMKGRDTRLLFCTTGILLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRPELRLVLMSATLDAELFSSYFGGATVINIPGFTYPVRTHFLEDILDMTGYRLTPYNQIDDYGQEKMWKMSKQAPRKRKSQIASAVEDTLKAANFNEYSSQTRESLSCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTGWDDINSLNDKLQANRILGDPTRVLLLTCHGSMASSEQRLIFDEPESGVRKIVLATNIAETSITINDVVFVIDCGKAKETSYDALNNTSCLLPSWISTVSAQQRRGRAGRVQPGECYRLYPRCVYDAFAEYQLPEILRTPLQSLCLQIKSLRLGTIAGFLSRALQSPELLAVQNAIEYLKIIGALDHNEELTVLGQYLAMLPMEPKLGKMLILGAIFNCLEPVLTIVAGLSVRDPFLAPMDKKDLAEAAKSQFSHDYSDHLALVRAFEGWKDAERGLAGYEYCWKNFLSAPSMKVIDSLRKEFLSLLKDTGLVDCDTSICNAWGRDERFIRAVICYGLYPGISSIVQNGKSSSLKTMEDGQVFLYSNSVNARESEIPYPWLVFNEKMKVNSVFLKDSTAVSDSVLLLFGGSISQGEIDGHLKMMGGYLEFFMNPSVADMYQCIRRELDELIQNKLLNPRLNIHTHEDLLAAVRLLVAEDQCEGRFIFGHQVFKPSKPSVVGAQPAFISRTESGPGGDNSKSQLQTLLTRAGYAAPSYRTKQLKNGQFRSTVEFNGMEIMGQPCNNKKNAEKDAAAEALQWIMGGIKTSEECINHMSILLKRSKKDHS
cHHHHHccccHHHHHHHHHHHHcccEEEEEccccccHHcHHHHHHHHHHHHccccccEEEEEEccccHHHHHHHHHHHHHHccccccEEEEEEEccccccccEEEEEEcHHHHHHHHHccccccccEEEEccccccccccHHHHHHHHHHHHHHccccEEEEEEEEccHHHHHHccccccEEEEcccccccEEEEccHHHHHHccccccccccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHccccccHHHHHHHccccccccHHHHHHHHHHHHHHccccccEEEEcccHHHHHHHHHHHHHcccccccccEEEEEcccccccHHHHccccccccccEEEEEEccccccccccccEEEEEEcccccEEEEEccccccccccccccHHcHHHHcccccccccccccccccHHHHHHccccccccEEEccHHHHHHHHHHcccccHHHHHHcccccccHHHHHHHHHHHHHcccccccccccHHHHHHHccccccccHHHHHHHHHccccHHHHHHHHHcccccccccccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHcccccEEEccccccccEEEcccccEEEcccccccccccccccEEEEEEEEEEccEEEEccccccHHHHHHHccccccccccccEEEEccEEEEEEcHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccEEEEEEccccccccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccc
cHHHHHcccHHHHHHHHHHHHHcccEEEEEEccccccccccHHHHHHHHHHccccccEEEEEcccHHHHHHHHHHHHHHHHccccccEEEEEEEEccccccccEEEEEccHHHHHHHHccccccccEEEEEEcHHHccHHHHHHHHHHHHHHHHccccEEEEEEEEccHHHHHHHHccccEEEEccccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHcccccccccEEEcccHHHHHHHHHHHHHcHHcHccHHHcccccccHHHHHHHHHHHHcccccccEEEEEccHHHHHHHHHHHHccccccccccEEEEEccccccHHHHHHHHcccccccEEEEEEEEccEEEEEcccEEEEEccccEEEcccccccccccccHHHHHHHHHHHHHccccccccEEEEEEccHHHHHHHHcccccHHHcccHHHHHHHHHHcccccHHHHHHHHcccccHHHHHHHHHHHHHHccccccccccHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHcccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHccccccEEEcccccEEEEEEEcccEEEEccccHccccccccccEEEEEEEEEEcEEEEEccccccccEEEEEcccEEEEcccccEEEEccEEEEEccHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHccccccccEEEcccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccEcEEEcccccEEEEEEEcccEEcccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHcccccccc
mlefrrnlpaykeKNRLLTAISQNQVVIISgetgcgkttqvPQFILESEITSVRGAVCSIictqprrisamSVSERVASERGEKLGESVGYKVRlegmkgrdtrlLFCTTGILLRRLLVDRNLKGVTHVIVDEvhergmneDFLLIVLKDLLSRRPELRLVLMSATLDAELFssyfggatvinipgftypvrTHFLEDILdmtgyrltpynqiddyGQEKMWKmskqaprkRKSQIASAVEDTLKAanfneyssqtreslscwnpdcigfnLIEYVLCYIcekerpgaVLVFMTGWDDINSLNDklqanrilgdpTRVLLLTChgsmasseqrlifdepesgVRKIVLATNiaetsitinDVVFVIDCGKAKETSYDalnntscllpswiSTVSAQQrrgragrvqpgecyrlyprcvydafaeyqlpeilrTPLQSLCLQIKSLRLGTIAGFLSRALQSPELLAVQNAIEYLKIIGALDHNEELTVLGQYLAmlpmepklGKMLILGAIFNCLEPVLTIVAglsvrdpflapmdkKDLAEAAKSQFSHDYSDHLALVRAFEGWKDAERGLAGYEYCWKNFLSAPSMKVIDSLRKEFLSLLKdtglvdcdtsicnawgrdeRFIRAVICYGlypgissivqngkssslktmedGQVFLysnsvnareseipypwlvfnekmkvnsvflkdstavsDSVLLLFGgsisqgeidGHLKMMGGYLeffmnpsvaDMYQCIRRELDELIQNkllnprlnihTHEDLLAAVRLLVAEDqcegrfifghqvfkpskpsvvgaqpafisrtesgpggdnskSQLQTLLTRagyaapsyrtkqlkngqfrstvefngmeimgqpcnnkknAEKDAAAEALQWIMGGIKTSEECINHMSILLKRSKKDHS
mlefrrnlpaykeknrlltaisQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIIctqprrisamsvservasergeklgesvgykvrlegmkgrdtrllFCTTGILLrrllvdrnlkGVTHVIvdevhergmnedFLLIVLKDLLSRRPELRLVLMSATLDAELFSSYFGGATVINIPGFTYPVRTHFLEDILDMTGYRLTPYNQIDDYGQEKMWKMSKQAPRKRKSQIASAVEDTLKAANFNEYSSQTRESLSCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTGWDDINSLNDKLQANRILGDPTRVLLLTCHGSMASseqrlifdepesGVRKIVLAtniaetsitindvVFVIDCGKAKETSYDALNNTSCLLPSWISTVsaqqrrgragrvqpgecyrLYPRCVYDAFAEYQLPEILRTPLQSLCLQIKSLRLGTIAGFLSRALQSPELLAVQNAIEYLKIIGALDHNEELTVLGQYLAMLPMEPKLGKMLILGAIFNCLEPVLTIVAGLSVRDPFLAPMDKKDLAEAAKSQFSHDYSDHLALVRAFEGWKDAERGLAGYEYCWKNFLSAPSMKVIDSLRKEFLSLLkdtglvdcDTSICNAWGRDERFIRAVICYGLYPGISSIVQNGKSSSLKTMEDGQVFLYSNSVNARESEIPYPWLVFNEKMKVNSVFLKDSTAVSDSVLLLFGGSISQGEIDGHLKMMGGYLEFFMNPSVADMYQCIRRELDELIQNKLLNPRLNIHTHEDLLAAVRLLVAEDQCEGRFIFGhqvfkpskpsvVGAQPAFIsrtesgpggdnSKSQLQTLLTRAGYaapsyrtkqlkngqFRSTVEFNGMEIMGQPCNNKKNAEKDAAAEALQWIMGGIKTSEECINHMSillkrskkdhs
MLEFRRNLPAYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGESVGYKVRLEGMKGRDTRLLFCTTGILLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRPELRLVLMSATLDAELFSSYFGGATVINIPGFTYPVRTHFLEDILDMTGYRLTPYNQIDDYGQEKMWKMSKQAPRKRKSQIASAVEDTLKAANFNEYSSQTRESLSCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTGWDDINSLNDKLQANRILGDPTRVLLLTCHGSMASSEQRLIFDEPESGVRKIVLATNIAETSITINDVVFVIDCGKAKETSYDALNNTSCLLPSWISTVSaqqrrgragrVQPGECYRLYPRCVYDAFAEYQLPEILRTPLQSLCLQIKSLRLGTIAGFLSRALQSPELLAVQNAIEYLKIIGALDHNEELTVLGQYLAMLPMEPKLGKMLILGAIFNCLEPVLTIVAGLSVRDPFLAPMDKKDLAEAAKSQFSHDYSDHLALVRAFEGWKDAERGLAGYEYCWKNFLSAPSMKVIDSLRKEFLSLLKDTGLVDCDTSICNAWGRDERFIRAVICYGLYPGISSIVQNGKSSSLKTMEDGQVFLYSNSVNARESEIPYPWLVFNEKMKVNSVFLKDSTAVSDSVLLLFGGSISQGEIDGHLKMMGGYLEFFMNPSVADMYQCIRRELDELIQNKLLNPRLNIHTHEDLLAAVRLLVAEDQCEGRFIFGHQVFKPSKPSVVGAQPAFISRTESGPGGDNSKSQLQTLLTRAGYAAPSYRTKQLKNGQFRSTVEFNGMEIMGQPCnnkknaekdaaaeaLQWIMGGIKTSEECINHMSILLKRSKKDHS
**************NRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRI********************VGYKVRLEGMKGRDTRLLFCTTGILLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRPELRLVLMSATLDAELFSSYFGGATVINIPGFTYPVRTHFLEDILDMTGYRLTPYNQIDDYGQ****************************************SLSCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTGWDDINSLNDKLQANRILGDPTRVLLLTCHGSMASSEQRLIFDEPESGVRKIVLATNIAETSITINDVVFVIDCGKAKETSYDALNNTSCLLPSWISTVSAQQRRGRAGRVQPGECYRLYPRCVYDAFAEYQLPEILRTPLQSLCLQIKSLRLGTIAGFLSRALQSPELLAVQNAIEYLKIIGALDHNEELTVLGQYLAMLPMEPKLGKMLILGAIFNCLEPVLTIVAGLSVRDPFLAPM************FSHDYSDHLALVRAFEGWKDAERGLAGYEYCWKNFLSAPSMKVIDSLRKEFLSLLKDTGLVDCDTSICNAWGRDERFIRAVICYGLYPGISSIVQN**********DGQVFLYSNSVNARESEIPYPWLVFNEKMKVNSVFLKDSTAVSDSVLLLFGGSISQGEIDGHLKMMGGYLEFFMNPSVADMYQCIRRELDELIQNKLLNPRLNIHTHEDLLAAVRLLVAEDQCEGRFIFGHQVFK***********************************************************F*********************AEALQWIMGGIKTSEECINHMSILL********
**EFRRNLPAYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGESVGYKVRLEGMKGRDTRLLFCTTGILLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRPELRLVLMSATLDAELFSSYFGGATVINIPGFTYPVRTHFLEDILDMTGYRLTPYNQIDDYGQEKMWKMSKQA*****SQIASAV********************SCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTGWDDINSLNDKLQA****GDPTRVLLLTCHGSMASSEQRLIFDEPESGVRKIVLATNIAETSITINDVVFVIDCGKAKETSYDALNNTSCLLPSWISTVSAQQRRGRAGRVQPGECYRLYPRCVYDAFAEYQLPEILRTPLQSLCLQIKSLRLGTIAGFLSRALQSPELLAVQNAIEYLKIIGALDHNEELTVLGQYLAMLPMEPKLGKMLILGAIFNCLEPVLTIVAGLSVRDPFLAPMD**********QFSHDYSDHLALVRAFEGWKDAERGLAGYEYCWKNFLSAPSMKVIDSLRKEFLSLLKDTGLVDCDTS**NAWGRDERFIRAVICYGLYPGISSIVQNGKSSSLKTMEDGQVFLYSNSVNARESEIPYPWLVFNEKMKVNSVFLKDSTAVSDSVLLLFGGSISQGEIDGHLKMMGGYLEFFMNPSVADMYQCIRRELDELIQNKLLNPRL**HTHEDLLAAVRLLVAEDQ**********************************************************************VEFNGMEIM***************AEALQWI**************************
MLEFRRNLPAYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRR*****************LGESVGYKVRLEGMKGRDTRLLFCTTGILLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRPELRLVLMSATLDAELFSSYFGGATVINIPGFTYPVRTHFLEDILDMTGYRLTPYNQIDDYGQEKMW***************SAVEDTLKAANFNE********LSCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTGWDDINSLNDKLQANRILGDPTRVLLLTCHGSMASSEQRLIFDEPESGVRKIVLATNIAETSITINDVVFVIDCGKAKETSYDALNNTSCLLPSWISTV***********VQPGECYRLYPRCVYDAFAEYQLPEILRTPLQSLCLQIKSLRLGTIAGFLSRALQSPELLAVQNAIEYLKIIGALDHNEELTVLGQYLAMLPMEPKLGKMLILGAIFNCLEPVLTIVAGLSVRDPFLAPMDKKDLAEAAKSQFSHDYSDHLALVRAFEGWKDAERGLAGYEYCWKNFLSAPSMKVIDSLRKEFLSLLKDTGLVDCDTSICNAWGRDERFIRAVICYGLYPGISSIVQNGKSSSLKTMEDGQVFLYSNSVNARESEIPYPWLVFNEKMKVNSVFLKDSTAVSDSVLLLFGGSISQGEIDGHLKMMGGYLEFFMNPSVADMYQCIRRELDELIQNKLLNPRLNIHTHEDLLAAVRLLVAEDQCEGRFIFGHQVFKPSKPSVVGAQPAFISR*********SKSQLQTLLTRAGYAAPSYRTKQLKNGQFRSTVEFNGMEIMGQPCNNKKNAEKDAAAEALQWIMGGIKTSEECINHMSILLKRSKKDHS
MLEFRRNLPAYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGESVGYKVRLEGMKGRDTRLLFCTTGILLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRPELRLVLMSATLDAELFSSYFGGATVINIPGFTYPVRTHFLEDILDMTGYRLTPYNQIDDYGQEKMWKMSKQAPRKRKSQIASAVEDTLKAANFNEYSSQTRESLSCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTGWDDINSLNDKLQANRILGDPTRVLLLTCHGSMASSEQRLIFDEPESGVRKIVLATNIAETSITINDVVFVIDCGKAKETSYDALNNTSCLLPSWISTVSAQQRRGRAGRVQPGECYRLYPRCVYDAFAEYQLPEILRTPLQSLCLQIKSLRLGTIAGFLSRALQSPELLAVQNAIEYLKIIGALDHNEELTVLGQYLAMLPMEPKLGKMLILGAIFNCLEPVLTIVAGLSVRDPFLAPMDKKDLAEAAKSQFSHDYSDHLALVRAFEGWKDAERGLAGYEYCWKNFLSAPSMKVIDSLRKEFLSLLKDTGLVDCDTSICNAWGRDERFIRAVICYGLYPGISSIVQNGKSSSLKTMEDGQVFLYSNSVNARESEIPYPWLVFNEKMKVNSVFLKDSTAVSDSVLLLFGGSISQGEIDGHLKMMGGYLEFFMNPSVADMYQCIRRELDELIQNKLLNPRLNIHTHEDLLAAVRLLVAEDQCEGRFIFGHQ*************************GDNSKSQLQTLLTRAGYAAPSYRTKQLKNGQFRSTVEFNGMEIMGQPCNNKKNAEKDAAAEALQWIMGGIKTSEECINH*SILLKR******
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MLEFRRNLPAYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGESVGYKVRLEGMKGRDTRLLFCTTGILLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRPELRLVLMSATLDAELFSSYFGGATVINIPGFTYPVRTHFLEDILDMTGYRLTPYNQIDDYGQEKMWKMSKQAPRKRKSQIASAVEDTLKAANFNEYSSQTRESLSCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTGWDDINSLNDKLQANRILGDPTRVLLLTCHGSMASSEQRLIFDEPESGVRKIVLATNIAETSITINDVVFVIDCGKAKETSYDALNNTSCLLPSWISTVSAQQRRGRAGRVQPGECYRLYPRCVYDAFAEYQLPEILRTPLQSLCLQIKSLRLGTIAGFLSRALQSPELLAVQNAIEYLKIIGALDHNEELTVLGQYLAMLPMEPKLGKMLILGAIFNCLEPVLTIVAGLSVRDPFLAPMDKKDLAEAAKSQFSHDYSDHLALVRAFEGWKDAERGLAGYEYCWKNFLSAPSMKVIDSLRKEFLSLLKDTGLVDCDTSICNAWGRDERFIRAVICYGLYPGISSIVQNGKSSSLKTMEDGQVFLYSNSVNARESEIPYPWLVFNEKMKVNSVFLKDSTAVSDSVLLLFGGSISQGEIDGHLKMMGGYLEFFMNPSVADMYQCIRRELDELIQNKLLNPRLNIHTHEDLLAAVRLLVAEDQCEGRFIFGHQVFKPSKPSVVGAQPAFISRTESGPGGDNSKSQLQTLLTRAGYAAPSYRTKQLKNGQFRSTVEFNGMEIMGQPCNNKKNAEKDAAAEALQWIMGGIKTSEECINHMSILLKRSKKDHS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query901 2.2.26 [Sep-21-2011]
Q8VHK91001 Probable ATP-dependent RN yes no 0.830 0.747 0.442 1e-180
Q9H2U11008 Probable ATP-dependent RN yes no 0.829 0.741 0.438 1e-176
Q6P1581386 Putative ATP-dependent RN no no 0.829 0.538 0.387 1e-160
Q6P5D31388 Putative ATP-dependent RN no no 0.826 0.536 0.393 1e-159
A3KMI01362 ATP-dependent RNA helicas N/A no 0.834 0.552 0.398 1e-151
Q6PGC11365 ATP-dependent RNA helicas no no 0.843 0.556 0.382 1e-146
Q7Z4781369 ATP-dependent RNA helicas no no 0.850 0.559 0.379 1e-146
Q5BJS01194 Putative ATP-dependent RN no no 0.724 0.546 0.408 1e-143
Q99PU81217 Putative ATP-dependent RN no no 0.724 0.536 0.408 1e-143
Q2NKY81220 Putative ATP-dependent RN no no 0.724 0.535 0.407 1e-142
>sp|Q8VHK9|DHX36_MOUSE Probable ATP-dependent RNA helicase DHX36 OS=Mus musculus GN=Dhx36 PE=2 SV=2 Back     alignment and function desciption
 Score =  632 bits (1630), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 341/771 (44%), Positives = 492/771 (63%), Gaps = 23/771 (2%)

Query: 1   MLEFRRNLPAYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSI 60
           M  FR+ LP+Y  +  L+  I+ +QV +ISGETGCGKTTQV QFIL++ I   +G+ C I
Sbjct: 193 MQRFRKKLPSYGMQKELVNLINNHQVTVISGETGCGKTTQVTQFILDNYIERGKGSACRI 252

Query: 61  ICTQPRRISAMSVSERVASERGEKLGE--SVGYKVRLEG-MKGRDTRLLFCTTGILLRRL 117
           +CTQPRRISA+SV+ERVA+ER E  G   S GY++RL+  +  +   +L+CTTGI+L+ L
Sbjct: 253 VCTQPRRISAISVAERVATERAESCGNGNSTGYQIRLQSRLPRKQGSILYCTTGIILQWL 312

Query: 118 LVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRPELRLVLMSATLDAELFSSYFG 177
             D  L  V+H+++DE+HER +  D L+ V+KDLL  R +L+++LMSATL+AE FS YFG
Sbjct: 313 QSDSRLSSVSHIVLDEIHERNLQSDVLMTVIKDLLHFRSDLKVILMSATLNAEKFSEYFG 372

Query: 178 GATVINIPGFTYPVRTHFLEDILDMTGYRLTPYNQIDDYGQEKMWKMSKQAPRKRKSQIA 237
              +I+IPGFT+PV  + LEDI++   Y   P +Q +   Q K   M     R+ K +  
Sbjct: 373 NCPMIHIPGFTFPVVEYLLEDIIEKIRY--VP-DQKEHRSQFKRGFMQGHVNRQEKEE-K 428

Query: 238 SAVEDTLKAANFNE----YSSQTRESLSCWNPDCIGFNLIEYVLCYICEKERPGAVLVFM 293
            A+      A   E    YS+ T + L   + D +  NLI  ++ YI  +E  GA+LVF+
Sbjct: 429 EAIYKERWPAYIKELRTRYSASTVDVLQMMDDDKVDLNLIAALIRYIVLEEEDGAILVFL 488

Query: 294 TGWDDINSLNDKLQANRILGDPTRVLLLTCHGSMASSEQRLIFDEPESGVRKIVLATNIA 353
            GWD+I++L+D L + +++    + L++  H  M +  Q  +F +   GVRKIV+ATNIA
Sbjct: 489 PGWDNISTLHDLLMS-QVMFKSDKFLIIPLHSLMPTVNQTQVFKKTPPGVRKIVIATNIA 547

Query: 354 ETSITINDVVFVIDCGKAKETSYDALNNTSCLLPSWISTVSAQQRRGRAGRVQPGECYRL 413
           ETSITI+DVV+VID GK KET +D  NN S +   W+S  +A+QR+GRAGRVQPG CY L
Sbjct: 548 ETSITIDDVVYVIDGGKIKETHFDTQNNISTMSAEWVSKANAKQRKGRAGRVQPGHCYHL 607

Query: 414 YPRCVYDAFAEYQLPEILRTPLQSLCLQIKSLRLGTIAGFLSRALQSPELLAVQNAIEYL 473
           Y         +YQLPEILRTPL+ LCLQIK LRLG IA FLSR +  P   AV  +I++L
Sbjct: 608 YNGLRASLLDDYQLPEILRTPLEELCLQIKILRLGGIAYFLSRLMDPPSNEAVVLSIKHL 667

Query: 474 KIIGALDHNEELTVLGQYLAMLPMEPKLGKMLILGAIFNCLEPVLTIVAGLSVRDPFLAP 533
             + ALD  EELT LG +LA LP+EP +GKM++ GA+F CL+PVLTI A LS +DPF+ P
Sbjct: 668 MELSALDKQEELTPLGVHLARLPVEPHIGKMILFGALFCCLDPVLTIAASLSFKDPFVIP 727

Query: 534 MDKKDLAEAAKSQFSHDY-SDHLALVRAFEGWKDAERGLAGYE--YCWKNFLSAPSMKVI 590
           + K+ +A+A + + + +  SDHL +V AFEGW++A+R    YE  YCW+ FLS+ +++++
Sbjct: 728 LGKEKIADARRKELAKETRSDHLTVVNAFEGWEEAKRRGFRYEKDYCWEYFLSSNTLQML 787

Query: 591 DSLRKEFLSLLKDTGLVDCDT---SICNAWGRDERFIRAVICYGLYPGISSIVQN-GKSS 646
            +++ +F   L   G V   +      N    +E+ I+AVIC GLYP ++ I  N GK  
Sbjct: 788 HNMKGQFAEHLLGAGFVSSRSPKDPKANINSDNEKIIKAVICAGLYPKVAKIRLNLGKKR 847

Query: 647 SL---KTMEDGQVFLYSNSVNARESEIPYPWLVFNEKMKVNSVFLKDSTAVSDSVLLLFG 703
            +    T  DG V ++  SVN  +++  Y WL+++ KM+ +S++L D T VS   LL FG
Sbjct: 848 KMVKVHTKSDGLVSIHPKSVNVEQTDFHYNWLIYHLKMRTSSIYLYDCTEVSPYCLLFFG 907

Query: 704 GSIS-QGEIDGHLKMMGGYLEFFMNPSVADMYQCIRRELDELIQNKLLNPR 753
           G IS Q + D  +  +  ++ F     +A + + +R+ELD L+Q K+ +P 
Sbjct: 908 GDISIQKDKDQEIIAVDEWIVFQSPERIAHLVKGLRKELDSLLQEKIESPH 958
Plays a role in degradation and deadenylation of mRNAs containing in their 3'-UTR the consensus ARE sequence element. May function in sex development and spermatogenesis.
Mus musculus (taxid: 10090)
EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: 1EC: 3
>sp|Q9H2U1|DHX36_HUMAN Probable ATP-dependent RNA helicase DHX36 OS=Homo sapiens GN=DHX36 PE=1 SV=2 Back     alignment and function description
>sp|Q6P158|DHX57_HUMAN Putative ATP-dependent RNA helicase DHX57 OS=Homo sapiens GN=DHX57 PE=1 SV=2 Back     alignment and function description
>sp|Q6P5D3|DHX57_MOUSE Putative ATP-dependent RNA helicase DHX57 OS=Mus musculus GN=Dhx57 PE=2 SV=2 Back     alignment and function description
>sp|A3KMI0|DHX29_XENLA ATP-dependent RNA helicase DHX29 OS=Xenopus laevis GN=dhx29 PE=2 SV=1 Back     alignment and function description
>sp|Q6PGC1|DHX29_MOUSE ATP-dependent RNA helicase Dhx29 OS=Mus musculus GN=Dhx29 PE=2 SV=1 Back     alignment and function description
>sp|Q7Z478|DHX29_HUMAN ATP-dependent RNA helicase DHX29 OS=Homo sapiens GN=DHX29 PE=1 SV=2 Back     alignment and function description
>sp|Q5BJS0|DHX30_RAT Putative ATP-dependent RNA helicase DHX30 OS=Rattus norvegicus GN=Dhx30 PE=1 SV=1 Back     alignment and function description
>sp|Q99PU8|DHX30_MOUSE Putative ATP-dependent RNA helicase DHX30 OS=Mus musculus GN=Dhx30 PE=2 SV=1 Back     alignment and function description
>sp|Q2NKY8|DHX30_BOVIN Putative ATP-dependent RNA helicase DHX30 OS=Bos taurus GN=DHX30 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query901
224111576 1053 predicted protein [Populus trichocarpa] 0.998 0.854 0.828 0.0
255570705 1172 ATP-dependent RNA helicase, putative [Ri 0.998 0.767 0.835 0.0
297737748 1181 unnamed protein product [Vitis vinifera] 0.998 0.762 0.828 0.0
225424116 1195 PREDICTED: probable ATP-dependent RNA he 0.998 0.753 0.828 0.0
356574252 1209 PREDICTED: probable ATP-dependent RNA he 1.0 0.745 0.801 0.0
449435206 1181 PREDICTED: probable ATP-dependent RNA he 0.998 0.762 0.793 0.0
297817698 1120 ATP binding protein [Arabidopsis lyrata 0.998 0.803 0.777 0.0
79548544 1113 DEA(D/H)-box RNA helicase family protein 0.998 0.808 0.766 0.0
356533151 1093 PREDICTED: probable ATP-dependent RNA he 0.996 0.821 0.774 0.0
297734269 1057 unnamed protein product [Vitis vinifera] 0.990 0.843 0.761 0.0
>gi|224111576|ref|XP_002315906.1| predicted protein [Populus trichocarpa] gi|222864946|gb|EEF02077.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score = 1584 bits (4101), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 746/900 (82%), Positives = 824/900 (91%)

Query: 1    MLEFRRNLPAYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSI 60
            MLEFR+ LPAYKEK+ +L AISQNQ+VIISG TGCGKTTQ+PQFILESE+ SVRGAVC+I
Sbjct: 153  MLEFRKTLPAYKEKDAILAAISQNQIVIISGATGCGKTTQIPQFILESEVESVRGAVCNI 212

Query: 61   ICTQPRRISAMSVSERVASERGEKLGESVGYKVRLEGMKGRDTRLLFCTTGILLRRLLVD 120
            ICTQPRRISAMSVSER+ASERGEKLGE VGYKVRLEG+KG+DT LLFCTTGILLRRLLVD
Sbjct: 213  ICTQPRRISAMSVSERIASERGEKLGERVGYKVRLEGVKGKDTHLLFCTTGILLRRLLVD 272

Query: 121  RNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRPELRLVLMSATLDAELFSSYFGGAT 180
            R+LKG+THVIVDE+HERGMNEDFLLIVLKDLL  RPEL+L+LMSATLDAELFSSYF GA 
Sbjct: 273  RSLKGITHVIVDEIHERGMNEDFLLIVLKDLLPHRPELKLILMSATLDAELFSSYFDGAP 332

Query: 181  VINIPGFTYPVRTHFLEDILDMTGYRLTPYNQIDDYGQEKMWKMSKQAPRKRKSQIASAV 240
            ++ IPGFT+PVRTHFLE+IL+MTGYRLT  NQID YGQEKMW++ KQAPRKRKSQIAS+V
Sbjct: 333  ILRIPGFTFPVRTHFLENILEMTGYRLTQCNQIDGYGQEKMWRIGKQAPRKRKSQIASSV 392

Query: 241  EDTLKAANFNEYSSQTRESLSCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTGWDDIN 300
            ED L+ A+F EYSSQTRESLSCWNPD IGFNL+EY+LC ICE ERPGAVLVFMTGWDDI+
Sbjct: 393  EDALRTADFKEYSSQTRESLSCWNPDSIGFNLVEYLLCNICENERPGAVLVFMTGWDDIS 452

Query: 301  SLNDKLQANRILGDPTRVLLLTCHGSMASSEQRLIFDEPESGVRKIVLATNIAETSITIN 360
            SL DKLQA+  LGDP+RVLLLTCHGSMASSEQRLIFDEPE GVRKI LATNIAETSITIN
Sbjct: 453  SLKDKLQAHPFLGDPSRVLLLTCHGSMASSEQRLIFDEPEEGVRKIALATNIAETSITIN 512

Query: 361  DVVFVIDCGKAKETSYDALNNTSCLLPSWISTVSAQQRRGRAGRVQPGECYRLYPRCVYD 420
            D+VFV+DCGKAKE+SYDALNNT CLLPSWIS VSAQQRRGRAGRVQPGECY LYPRCVYD
Sbjct: 513  DIVFVLDCGKAKESSYDALNNTPCLLPSWISKVSAQQRRGRAGRVQPGECYHLYPRCVYD 572

Query: 421  AFAEYQLPEILRTPLQSLCLQIKSLRLGTIAGFLSRALQSPELLAVQNAIEYLKIIGALD 480
            AFAEYQLPEILRTPLQS+CLQIKSL+LG+I+ FLSRALQSPELLAVQNAIEYLKIIGALD
Sbjct: 573  AFAEYQLPEILRTPLQSICLQIKSLKLGSISDFLSRALQSPELLAVQNAIEYLKIIGALD 632

Query: 481  HNEELTVLGQYLAMLPMEPKLGKMLILGAIFNCLEPVLTIVAGLSVRDPFLAPMDKKDLA 540
             NE LTVLG+YL MLP+EPKLGKML+LGAI NCL+PVLT+VAGLSVRDPFL P+DKKDLA
Sbjct: 633  QNENLTVLGRYLTMLPVEPKLGKMLVLGAILNCLDPVLTVVAGLSVRDPFLMPLDKKDLA 692

Query: 541  EAAKSQFSHDYSDHLALVRAFEGWKDAERGLAGYEYCWKNFLSAPSMKVIDSLRKEFLSL 600
            EAAKSQFS DYSDHLALVRA+EGWKDAER L+GYEYCWKNFLS  SMK IDSLRKEF SL
Sbjct: 693  EAAKSQFSGDYSDHLALVRAYEGWKDAERDLSGYEYCWKNFLSVQSMKAIDSLRKEFFSL 752

Query: 601  LKDTGLVDCDTSICNAWGRDERFIRAVICYGLYPGISSIVQNGKSSSLKTMEDGQVFLYS 660
            L DTGLVD + + CNAW  DE  +RAVIC GLYPGI SIV N KS SLKTMEDGQV L+S
Sbjct: 753  LMDTGLVDGNPTTCNAWSHDEHLVRAVICSGLYPGICSIVHNEKSFSLKTMEDGQVLLHS 812

Query: 661  NSVNARESEIPYPWLVFNEKMKVNSVFLKDSTAVSDSVLLLFGGSISQGEIDGHLKMMGG 720
            NSVNARES+IPYPWLVFNEK+KVNSVFL+DSTAVSDSVLLLFGGSIS+G+ DGHLKM+GG
Sbjct: 813  NSVNARESKIPYPWLVFNEKIKVNSVFLRDSTAVSDSVLLLFGGSISRGDADGHLKMLGG 872

Query: 721  YLEFFMNPSVADMYQCIRRELDELIQNKLLNPRLNIHTHEDLLAAVRLLVAEDQCEGRFI 780
            +LEF+M PSVA+MYQ +RRELDELIQ KLLNPR++IH H +LL+AVRLLV+ED C+GRF+
Sbjct: 873  FLEFYMQPSVAEMYQSLRRELDELIQTKLLNPRMDIHMHHELLSAVRLLVSEDNCDGRFV 932

Query: 781  FGHQVFKPSKPSVVGAQPAFISRTESGPGGDNSKSQLQTLLTRAGYAAPSYRTKQLKNGQ 840
            FG   FK SKP+V   QP  ISR +SGPGGDNSKSQLQTLLTRAGYAAPSY+TKQLKN Q
Sbjct: 933  FGCHFFKSSKPAVFATQPTLISRGDSGPGGDNSKSQLQTLLTRAGYAAPSYKTKQLKNNQ 992

Query: 841  FRSTVEFNGMEIMGQPCNNKKNAEKDAAAEALQWIMGGIKTSEECINHMSILLKRSKKDH 900
            FR+TVEFNGM+IMGQPCNNKK+AEKDAAAEALQW++GG +TS+E INHMS+LLK+SKKDH
Sbjct: 993  FRATVEFNGMQIMGQPCNNKKSAEKDAAAEALQWLVGGTQTSQEYINHMSMLLKKSKKDH 1052

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255570705|ref|XP_002526307.1| ATP-dependent RNA helicase, putative [Ricinus communis] gi|223534388|gb|EEF36096.1| ATP-dependent RNA helicase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|297737748|emb|CBI26949.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225424116|ref|XP_002280133.1| PREDICTED: probable ATP-dependent RNA helicase DHX36-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|356574252|ref|XP_003555264.1| PREDICTED: probable ATP-dependent RNA helicase DHX36-like [Glycine max] Back     alignment and taxonomy information
>gi|449435206|ref|XP_004135386.1| PREDICTED: probable ATP-dependent RNA helicase DHX36-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297817698|ref|XP_002876732.1| ATP binding protein [Arabidopsis lyrata subsp. lyrata] gi|297322570|gb|EFH52991.1| ATP binding protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|79548544|ref|NP_178223.2| DEA(D/H)-box RNA helicase family protein [Arabidopsis thaliana] gi|330250311|gb|AEC05405.1| DEA(D/H)-box RNA helicase family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356533151|ref|XP_003535131.1| PREDICTED: probable ATP-dependent RNA helicase DHX36-like [Glycine max] Back     alignment and taxonomy information
>gi|297734269|emb|CBI15516.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query901
TAIR|locus:20387961113 AT2G01130 [Arabidopsis thalian 0.998 0.808 0.742 0.0
TAIR|locus:20081441206 AT1G48650 [Arabidopsis thalian 0.987 0.737 0.689 0.0
TAIR|locus:5049549041161 ABO6 "ABA overly sensitive 6" 0.962 0.746 0.642 4.7e-309
TAIR|locus:2039280995 AT2G35920 [Arabidopsis thalian 0.832 0.753 0.513 8.9e-212
MGI|MGI:19194121001 Dhx36 "DEAH (Asp-Glu-Ala-His) 0.829 0.746 0.432 5.3e-159
UNIPROTKB|F6V8H11122 DHX36 "Uncharacterized protein 0.829 0.665 0.432 1.1e-158
UNIPROTKB|Q05B791010 DHX36 "Uncharacterized protein 0.826 0.737 0.432 9.9e-158
RGD|13087671000 Dhx36 "DEAH (Asp-Glu-Ala-His) 0.829 0.747 0.433 1.3e-157
UNIPROTKB|Q9H2U11008 DHX36 "Probable ATP-dependent 0.829 0.741 0.428 1.8e-156
UNIPROTKB|E1C550985 DHX36 "Uncharacterized protein 0.829 0.758 0.426 2.1e-155
TAIR|locus:2038796 AT2G01130 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 3554 (1256.1 bits), Expect = 0., P = 0.
 Identities = 668/900 (74%), Positives = 769/900 (85%)

Query:     1 MLEFRRNLPAYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSI 60
             ML+ R +LPA+K+++ +LTAISQNQV++ISGETGCGKTTQ+PQFILESEI + RGA  SI
Sbjct:   213 MLDSRTSLPAFKQRHSVLTAISQNQVIVISGETGCGKTTQIPQFILESEIEANRGAFSSI 272

Query:    61 ICTQPRRISAMSVSERVASERGEKLGESVGYKVRLEGMKGRDTRLLFCTTGILLRRLLVD 120
             ICTQPRRISAMSVSERVA ERGE+LGESVGYKVRLEG+KGRDTRLLFCTTGILLRRLLVD
Sbjct:   273 ICTQPRRISAMSVSERVAYERGEQLGESVGYKVRLEGVKGRDTRLLFCTTGILLRRLLVD 332

Query:   121 RNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRPELRLVLMSATLDAELFSSYFGGAT 180
             RNL+GVTHVIVDE+HERGMNEDFLLI+LKDLLSRR EL+L+LMSATLDAELFSSYFGGA 
Sbjct:   333 RNLRGVTHVIVDEIHERGMNEDFLLIILKDLLSRRSELKLILMSATLDAELFSSYFGGAG 392

Query:   181 VINIPGFTYPVRTHFLEDILDMTGYRLTPYNQIDDYGQEKMWKMSKQAPRKRKSQIASAV 240
             VI IPGFTYPVR+HFLEDIL+MT YRLTPYNQIDDYGQE+ WKM+KQ P+KRKSQI   V
Sbjct:   393 VIYIPGFTYPVRSHFLEDILEMTRYRLTPYNQIDDYGQERTWKMNKQIPKKRKSQITFVV 452

Query:   241 EDTLKAANFNEYSSQTRESLSCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTGWDDIN 300
             ED L+AA+F E+S +TRESLSCW PDCIGFNLIE++LC ICE E PG +L+F+TGWDDI+
Sbjct:   453 EDALRAADFKEFSPETRESLSCWYPDCIGFNLIEFLLCNICENEGPGGILIFLTGWDDIS 512

Query:   301 SLNDKLQANRILGDPTRVLLLTCHGSMASSEQRLIFDEPESGVRKIVLATNIAETSITIN 360
             SL +KLQ + I G+P  V+LL CHGSM + EQRLIF+EP SGVRKIVLATNIAETSITIN
Sbjct:   513 SLKEKLQIHPIFGNPDLVMLLACHGSMETFEQRLIFEEPASGVRKIVLATNIAETSITIN 572

Query:   361 DVVFVIDCGKAKETSYDALNNTSCLLPSWISTVSXXXXXXXXXXVQPGECYRLYPRCVYD 420
             DV FVIDCGKAKETSYDALNNT CLLPSWIS VS          V+PG+CY LYP+CVYD
Sbjct:   573 DVAFVIDCGKAKETSYDALNNTPCLLPSWISKVSAQQRRGRAGRVRPGQCYHLYPKCVYD 632

Query:   421 AFAEYQLPEILRTPLQSLCLQIKSLRLGTIAGFLSRALQSPELLAVQNAIEYLKIIGALD 480
             AFAEYQLPEILRTPL SLCLQIKSL LG+I+ FLSRALQSPELLAVQ AI +LKIIGALD
Sbjct:   633 AFAEYQLPEILRTPLHSLCLQIKSLNLGSISEFLSRALQSPELLAVQKAIAFLKIIGALD 692

Query:   481 HNEELTVLGQYLAMLPMEPKLGKMLILGAIFNCLEPVLTIVAGLSVRDPFLAPMDKKDLA 540
              NE+LT LG+YL+ LPMEPKLGKMLILGAI  CL+P+LT+ AGLSVRDPFL P DKKDLA
Sbjct:   693 ENEDLTTLGRYLSKLPMEPKLGKMLILGAILGCLDPILTVAAGLSVRDPFLTPQDKKDLA 752

Query:   541 EAAKSQFSHDYSDHLALVRAFEGWKDAERGLAGYEYCWKNFLSAPSMKVIDSLRKEFLSL 600
             EAAKSQFS D+SDHLALVRA+EGWK AE   A Y+YCWKNFLS  S++ IDSLRKEF SL
Sbjct:   753 EAAKSQFSRDHSDHLALVRAYEGWKKAEEESAVYDYCWKNFLSIQSLRAIDSLRKEFFSL 812

Query:   601 LKDTGLVDCDTSICNAWGRDERFIRAVICYGLYPGISSIVQNGKSSSLKTMEDGQVFLYS 660
             LKDTGL+D + SICN+ G D    RAVICYG+YPGI S+V N +S SLKTMEDGQV LYS
Sbjct:   813 LKDTGLIDGNPSICNSEGNDANLTRAVICYGMYPGICSVVHNERSFSLKTMEDGQVLLYS 872

Query:   661 NSVNARESEIPYPWLVFNEKMKVNSVFLKDSTAVSDSVLLLFGGSISQGEIDGHLKMMGG 720
             NS NARE++IPYPWLVFNEK+KVNSVFL+DSTA SDS L+LFGGSIS+G+ DGHLKM+GG
Sbjct:   873 NSENARETKIPYPWLVFNEKIKVNSVFLRDSTACSDSTLILFGGSISKGDTDGHLKMLGG 932

Query:   721 YLEFFMNPSVADMYQCIRRELDELIQNKLLNPRLNIHTHEDLLAAVRLLVAEDQCEGRFI 780
             YLEFFM P VA++YQ +++ELDELIQNKLLNP++++  H +LL+A+RLLV+ED C+GRF+
Sbjct:   933 YLEFFMKPDVAEIYQTLKKELDELIQNKLLNPKVDMQAHRELLSAIRLLVSEDGCDGRFV 992

Query:   781 FGHQVFKPSKPSVVGAQPAFISRTESGPGGDNSKSQLQTLLTRAGYAAPSYRTKQLKNGQ 840
             FGHQ+ +P + S +  +P+  SRTESGPGGDNSKSQLQT+LTRAGY  P Y+TKQLKN +
Sbjct:   993 FGHQILRPLEISALSTKPSLFSRTESGPGGDNSKSQLQTILTRAGYTVPMYKTKQLKNNK 1052

Query:   841 FRSTVEFNGMEIMGQPCXXXXXXXXXXXXXXLQWIMGGIKTSEECINHMSILLKRSKKDH 900
             F++TVEFN  +IMGQPC              +QW+ GG K S E +NHMS LLK+ KKDH
Sbjct:  1053 FQTTVEFNETQIMGQPCSNKKSAEKDAAAEAIQWLKGGAKESHEQVNHMSKLLKKGKKDH 1112
GO:0003676 "nucleic acid binding" evidence=IEA;ISS
GO:0003723 "RNA binding" evidence=IEA
GO:0003725 "double-stranded RNA binding" evidence=IEA
GO:0004386 "helicase activity" evidence=IEA;ISS
GO:0005524 "ATP binding" evidence=IEA;ISS
GO:0005622 "intracellular" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0008026 "ATP-dependent helicase activity" evidence=IEA
TAIR|locus:2008144 AT1G48650 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:504954904 ABO6 "ABA overly sensitive 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2039280 AT2G35920 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
MGI|MGI:1919412 Dhx36 "DEAH (Asp-Glu-Ala-His) box polypeptide 36" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F6V8H1 DHX36 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q05B79 DHX36 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
RGD|1308767 Dhx36 "DEAH (Asp-Glu-Ala-His) box polypeptide 36" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q9H2U1 DHX36 "Probable ATP-dependent RNA helicase DHX36" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E1C550 DHX36 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.6.4.13LOW CONFIDENCE prediction!
3rd Layer3.6.40.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pg.C_LG_X1060
hypothetical protein (1053 aa)
(Populus trichocarpa)
Predicted Functional Partners:
eugene3.00011628
hypothetical protein (207 aa)
  •     0.506

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query901
COG1643845 COG1643, HrpA, HrpA-like helicases [DNA replicatio 1e-170
TIGR01967 1283 TIGR01967, DEAH_box_HrpA, ATP-dependent helicase H 7e-55
TIGR01967 1283 TIGR01967, DEAH_box_HrpA, ATP-dependent helicase H 4e-49
PRK11131 1294 PRK11131, PRK11131, ATP-dependent RNA helicase Hrp 4e-49
PRK11131 1294 PRK11131, PRK11131, ATP-dependent RNA helicase Hrp 1e-47
TIGR01970819 TIGR01970, DEAH_box_HrpB, ATP-dependent helicase H 2e-38
pfam0440891 pfam04408, HA2, Helicase associated domain (HA2) 7e-36
TIGR01970819 TIGR01970, DEAH_box_HrpB, ATP-dependent helicase H 9e-35
PRK11664812 PRK11664, PRK11664, ATP-dependent RNA helicase Hrp 8e-34
PRK11664812 PRK11664, PRK11664, ATP-dependent RNA helicase Hrp 3e-30
smart0084782 smart00847, HA2, Helicase associated domain (HA2) 1e-26
cd00046144 cd00046, DEXDc, DEAD-like helicases superfamily 2e-24
smart00487201 smart00487, DEXDc, DEAD-like helicases superfamily 2e-24
pfam07717109 pfam07717, OB_NTP_bind, Oligonucleotide/oligosacch 9e-21
smart0049082 smart00490, HELICc, helicase superfamily c-termina 6e-12
pfam0027178 pfam00271, Helicase_C, Helicase conserved C-termin 3e-11
cd00079131 cd00079, HELICc, Helicase superfamily c-terminal d 1e-10
pfam00270169 pfam00270, DEAD, DEAD/DEAH box helicase 7e-10
pfam0003566 pfam00035, dsrm, Double-stranded RNA binding motif 3e-09
PHA02653675 PHA02653, PHA02653, RNA helicase NPH-II; Provision 3e-08
cd0004868 cd00048, DSRM, Double-stranded RNA binding motif 7e-08
COG1111542 COG1111, MPH1, ERCC4-like helicases [DNA replicati 7e-05
TIGR02191220 TIGR02191, RNaseIII, ribonuclease III, bacterial 9e-05
PHA02653675 PHA02653, PHA02653, RNA helicase NPH-II; Provision 2e-04
>gnl|CDD|224557 COG1643, HrpA, HrpA-like helicases [DNA replication, recombination, and repair] Back     alignment and domain information 
 Score =  515 bits (1329), Expect = e-170
 Identities = 256/722 (35%), Positives = 351/722 (48%), Gaps = 117/722 (16%)

Query: 1   MLEFRRNLPAYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSI 60
           +LE+R  LP    ++ +L AI QNQVVII GETG GKTTQ+PQF+LE E   + G    I
Sbjct: 42  ILEYRSGLPVTAVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLE-EGLGIAGK---I 97

Query: 61  ICTQPRRISAMSVSERVASERGEKLGESVGYKVRLEGMKGRDTRLLFCTTGILLRRLLVD 120
            CTQPRR++A SV+ERVA E GEKLGE+VGY +R E      TR+   T GILLR +  D
Sbjct: 98  GCTQPRRLAARSVAERVAEELGEKLGETVGYSIRFESKVSPRTRIKVMTDGILLREIQND 157

Query: 121 RNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLS-RRPELRLVLMSATLDAELFSSYFGGA 179
             L G + VI+DE HER +N D LL +LKDLL+ RR +L+L++MSATLDAE FS+YFG A
Sbjct: 158 PLLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKLIIMSATLDAERFSAYFGNA 217

Query: 180 TVINIPGFTYPVRTHFLEDILDMTGYRLTPYNQIDDYGQEKMWKMSKQAPRKRKSQIASA 239
            VI I G     RT+ +E            Y    +                        
Sbjct: 218 PVIEIEG-----RTYPVEIR----------YLPEAEADY--------------------I 242

Query: 240 VEDTLKAANFNEYSSQTRESLSCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTGWDDI 299
           + D + AA                                I  +E  G++LVF+ G  +I
Sbjct: 243 LLDAIVAA------------------------------VDIHLREGSGSILVFLPGQREI 272

Query: 300 NSLNDKLQANRILGDPTRVLLLTCHGSMASSEQRLIFDEPESGVRKIVLATNIAETSITI 359
               + L+    LGD   +L L  +G++++ EQ  +F+    G RK+VLATNIAETS+TI
Sbjct: 273 ERTAEWLEKAE-LGDDLEILPL--YGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTI 329

Query: 360 NDVVFVIDCGKAKETSYDALNNTSCLLPSWISTVSAQQRRGRAGRVQPGECYRLYPRCVY 419
             + +VID G AKE  YD     + L    IS  SA QR GRAGR  PG CYRLY    +
Sbjct: 330 PGIRYVIDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRTGPGICYRLYSEEDF 389

Query: 420 DAFAEYQLPEILRTPLQSLCLQIKSLRLGT-IAGFLSRALQSPELLAVQNAIEYLKIIGA 478
            AF E+ LPEILRT L  L LQ+KSL +G  IA F    L  P   A+Q A+  L+ +GA
Sbjct: 390 LAFPEFTLPEILRTDLSGLVLQLKSLGIGQDIAPF--PFLDPPPEAAIQAALTLLQELGA 447

Query: 479 LDHNEELTVLGQYLAMLPMEPKLGKMLILGAIFNCLEPVLTIVAGLSVRD---PFLAPMD 535
           LD + +LT LG+ +++LP++P+L +ML+      CL    TI + LS +D    F   + 
Sbjct: 448 LDDSGKLTPLGKQMSLLPLDPRLARMLLTAPEGGCLGEAATIASMLSEQDRESDFSRDVK 507

Query: 536 KK------DLAEAAKSQFSHDY-SDHLALVRAFEGWKDAERGLAGY---EYCWKNFLSAP 585
            +      DL +  K + + D   DHL L+ AF      +R    Y     C        
Sbjct: 508 LRKQRTAQDLLKRLKRRNAADPRGDHLLLLEAFPDRIARKRAKGEYLRANGCRAMLFPTK 567

Query: 586 SMKVIDSLRKEFLSLLKDTGLVDCDTSICNAWGRDER------------------FIRAV 627
           ++     +    L              I  A   DE                    IR  
Sbjct: 568 ALSRAPWIIAALLVQTSAL-----AGRILAAAEIDEDEWAAQHLPEHCYSEPIWDDIRGA 622

Query: 628 ICYGLYPGISSIVQNGKSSSLKTMEDGQ-VFLYSNSVNARESEIPYPWLVFNEKMKVNSV 686
           +  G    I+ +  +G+     T+ D   VF + +SV  R   +   W+ + E ++    
Sbjct: 623 LAAGRKLNIAQLQLDGR--PYVTLSDNTPVFAHPSSV--RLGLVLLEWIKYAEFLRTRKG 678

Query: 687 FL 688
           +L
Sbjct: 679 YL 680

Length = 845
>gnl|CDD|233659 TIGR01967, DEAH_box_HrpA, ATP-dependent helicase HrpA Back     alignment and domain information
>gnl|CDD|233659 TIGR01967, DEAH_box_HrpA, ATP-dependent helicase HrpA Back     alignment and domain information
>gnl|CDD|182986 PRK11131, PRK11131, ATP-dependent RNA helicase HrpA; Provisional Back     alignment and domain information
>gnl|CDD|182986 PRK11131, PRK11131, ATP-dependent RNA helicase HrpA; Provisional Back     alignment and domain information
>gnl|CDD|233660 TIGR01970, DEAH_box_HrpB, ATP-dependent helicase HrpB Back     alignment and domain information
>gnl|CDD|218070 pfam04408, HA2, Helicase associated domain (HA2) Back     alignment and domain information
>gnl|CDD|233660 TIGR01970, DEAH_box_HrpB, ATP-dependent helicase HrpB Back     alignment and domain information
>gnl|CDD|236950 PRK11664, PRK11664, ATP-dependent RNA helicase HrpB; Provisional Back     alignment and domain information
>gnl|CDD|236950 PRK11664, PRK11664, ATP-dependent RNA helicase HrpB; Provisional Back     alignment and domain information
>gnl|CDD|214852 smart00847, HA2, Helicase associated domain (HA2) Add an annotation Back     alignment and domain information
>gnl|CDD|238005 cd00046, DEXDc, DEAD-like helicases superfamily Back     alignment and domain information
>gnl|CDD|214692 smart00487, DEXDc, DEAD-like helicases superfamily Back     alignment and domain information
>gnl|CDD|219532 pfam07717, OB_NTP_bind, Oligonucleotide/oligosaccharide-binding (OB)-fold Back     alignment and domain information
>gnl|CDD|197757 smart00490, HELICc, helicase superfamily c-terminal domain Back     alignment and domain information
>gnl|CDD|201125 pfam00271, Helicase_C, Helicase conserved C-terminal domain Back     alignment and domain information
>gnl|CDD|238034 cd00079, HELICc, Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process Back     alignment and domain information
>gnl|CDD|215832 pfam00270, DEAD, DEAD/DEAH box helicase Back     alignment and domain information
>gnl|CDD|215670 pfam00035, dsrm, Double-stranded RNA binding motif Back     alignment and domain information
>gnl|CDD|177443 PHA02653, PHA02653, RNA helicase NPH-II; Provisional Back     alignment and domain information
>gnl|CDD|238007 cd00048, DSRM, Double-stranded RNA binding motif Back     alignment and domain information
>gnl|CDD|224036 COG1111, MPH1, ERCC4-like helicases [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|233772 TIGR02191, RNaseIII, ribonuclease III, bacterial Back     alignment and domain information
>gnl|CDD|177443 PHA02653, PHA02653, RNA helicase NPH-II; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 901
KOG0920924 consensus ATP-dependent RNA helicase A [RNA proces 100.0
KOG0922674 consensus DEAH-box RNA helicase [RNA processing an 100.0
KOG09241042 consensus mRNA splicing factor ATP-dependent RNA h 100.0
KOG0923902 consensus mRNA splicing factor ATP-dependent RNA h 100.0
KOG0925699 consensus mRNA splicing factor ATP-dependent RNA h 100.0
PRK11131 1294 ATP-dependent RNA helicase HrpA; Provisional 100.0
TIGR01967 1283 DEAH_box_HrpA ATP-dependent helicase HrpA. This mo 100.0
COG1643845 HrpA HrpA-like helicases [DNA replication, recombi 100.0
KOG09261172 consensus DEAH-box RNA helicase [RNA processing an 100.0
KOG09211282 consensus Dosage compensation complex, subunit MLE 100.0
TIGR01970819 DEAH_box_HrpB ATP-dependent helicase HrpB. This mo 100.0
PRK11664812 ATP-dependent RNA helicase HrpB; Provisional 100.0
PHA02653675 RNA helicase NPH-II; Provisional 100.0
PRK01172674 ski2-like helicase; Provisional 100.0
PRK02362737 ski2-like helicase; Provisional 100.0
PRK00254720 ski2-like helicase; Provisional 100.0
KOG0330476 consensus ATP-dependent RNA helicase [RNA processi 100.0
PRK11776460 ATP-dependent RNA helicase DbpA; Provisional 100.0
PRK04837423 ATP-dependent RNA helicase RhlB; Provisional 100.0
PRK10590456 ATP-dependent RNA helicase RhlE; Provisional 100.0
PTZ00110545 helicase; Provisional 100.0
KOG0331519 consensus ATP-dependent RNA helicase [RNA processi 100.0
PRK11634629 ATP-dependent RNA helicase DeaD; Provisional 100.0
PRK11192434 ATP-dependent RNA helicase SrmB; Provisional 100.0
PRK04537572 ATP-dependent RNA helicase RhlB; Provisional 100.0
PRK01297475 ATP-dependent RNA helicase RhlB; Provisional 100.0
PLN00206518 DEAD-box ATP-dependent RNA helicase; Provisional 100.0
PTZ00424401 helicase 45; Provisional 100.0
COG0513513 SrmB Superfamily II DNA and RNA helicases [DNA rep 100.0
COG1204766 Superfamily II helicase [General function predicti 100.0
TIGR03817742 DECH_helic helicase/secretion neighborhood putativ 100.0
KOG0345567 consensus ATP-dependent RNA helicase [RNA processi 100.0
COG1202830 Superfamily II helicase, archaea-specific [General 100.0
TIGR00614470 recQ_fam ATP-dependent DNA helicase, RecQ family. 100.0
COG1111542 MPH1 ERCC4-like helicases [DNA replication, recomb 99.98
PRK11057607 ATP-dependent DNA helicase RecQ; Provisional 99.98
PRK13767876 ATP-dependent helicase; Provisional 99.98
PLN031371195 ATP-dependent DNA helicase; Q4-like; Provisional 99.97
KOG0342543 consensus ATP-dependent RNA helicase pitchoune [RN 99.97
KOG0343758 consensus RNA Helicase [RNA processing and modific 99.97
KOG0354746 consensus DEAD-box like helicase [General function 99.97
KOG0338691 consensus ATP-dependent RNA helicase [RNA processi 99.97
TIGR01389591 recQ ATP-dependent DNA helicase RecQ. The ATP-depe 99.97
COG1201814 Lhr Lhr-like helicases [General function predictio 99.97
KOG09211282 consensus Dosage compensation complex, subunit MLE 99.97
KOG0333673 consensus U5 snRNP-like RNA helicase subunit [RNA 99.97
KOG0348708 consensus ATP-dependent RNA helicase [RNA processi 99.97
KOG0328400 consensus Predicted ATP-dependent RNA helicase FAL 99.97
PRK09751 1490 putative ATP-dependent helicase Lhr; Provisional 99.96
TIGR00580926 mfd transcription-repair coupling factor (mfd). Al 99.96
KOG0340442 consensus ATP-dependent RNA helicase [RNA processi 99.96
PRK10917681 ATP-dependent DNA helicase RecG; Provisional 99.96
TIGR01587358 cas3_core CRISPR-associated helicase Cas3. This mo 99.96
TIGR00643630 recG ATP-dependent DNA helicase RecG. 99.96
KOG0335482 consensus ATP-dependent RNA helicase [RNA processi 99.96
PRK106891147 transcription-repair coupling factor; Provisional 99.96
KOG0332477 consensus ATP-dependent RNA helicase [RNA processi 99.96
KOG0336629 consensus ATP-dependent RNA helicase [RNA processi 99.96
KOG0347731 consensus RNA helicase [RNA processing and modific 99.96
TIGR02621844 cas3_GSU0051 CRISPR-associated helicase Cas3, Anae 99.95
KOG0326459 consensus ATP-dependent RNA helicase [RNA processi 99.95
KOG0952 1230 consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup 99.95
KOG0339731 consensus ATP-dependent RNA helicase [RNA processi 99.95
KOG0350620 consensus DEAD-box ATP-dependent RNA helicase [RNA 99.95
PRK13766773 Hef nuclease; Provisional 99.95
PHA02558501 uvsW UvsW helicase; Provisional 99.94
KOG0346569 consensus RNA helicase [RNA processing and modific 99.94
TIGR03158357 cas3_cyano CRISPR-associated helicase, Cyano-type. 99.94
COG1205851 Distinct helicase family with a unique C-terminal 99.93
KOG4284 980 consensus DEAD box protein [Transcription] 99.93
COG0514590 RecQ Superfamily II DNA helicase [DNA replication, 99.93
KOG0341610 consensus DEAD-box protein abstrakt [RNA processin 99.92
KOG09481041 consensus Nuclear exosomal RNA helicase MTR4, DEAD 99.92
KOG0334997 consensus RNA helicase [RNA processing and modific 99.92
KOG0344593 consensus ATP-dependent RNA helicase [RNA processi 99.92
TIGR00603732 rad25 DNA repair helicase rad25. All proteins in t 99.92
KOG09471248 consensus Cytoplasmic exosomal RNA helicase SKI2, 99.91
KOG0951 1674 consensus RNA helicase BRR2, DEAD-box superfamily 99.91
COG45811041 Superfamily II RNA helicase [DNA replication, reco 99.91
KOG0327397 consensus Translation initiation factor 4F, helica 99.9
PRK09401 1176 reverse gyrase; Reviewed 99.9
PRK05580679 primosome assembly protein PriA; Validated 99.89
PRK09694878 helicase Cas3; Provisional 99.89
COG1061442 SSL2 DNA or RNA helicases of superfamily II [Trans 99.89
TIGR03714762 secA2 accessory Sec system translocase SecA2. Memb 99.88
PRK114481123 hsdR type I restriction enzyme EcoKI subunit R; Pr 99.88
COG4098441 comFA Superfamily II DNA/RNA helicase required for 99.88
PRK14701 1638 reverse gyrase; Provisional 99.88
COG1200677 RecG RecG-like helicase [DNA replication, recombin 99.88
TIGR00595505 priA primosomal protein N'. All proteins in this f 99.88
KOG0352641 consensus ATP-dependent DNA helicase [Replication, 99.87
KOG0337529 consensus ATP-dependent RNA helicase [RNA processi 99.87
TIGR01054 1171 rgy reverse gyrase. Generally, these gyrases are e 99.87
KOG09501008 consensus DNA polymerase theta/eta, DEAD-box super 99.86
PRK09200790 preprotein translocase subunit SecA; Reviewed 99.85
COG11971139 Mfd Transcription-repair coupling factor (superfam 99.84
TIGR00963745 secA preprotein translocase, SecA subunit. The pro 99.84
KOG0351941 consensus ATP-dependent DNA helicase [Replication, 99.84
PRK04914956 ATP-dependent helicase HepA; Validated 99.82
PRK12898656 secA preprotein translocase subunit SecA; Reviewed 99.81
PF07717114 OB_NTP_bind: Oligonucleotide/oligosaccharide-bindi 99.79
KOG0353695 consensus ATP-dependent DNA helicase [General func 99.76
PF04408102 HA2: Helicase associated domain (HA2); InterPro: I 99.75
COG1203733 CRISPR-associated helicase Cas3 [Defense mechanism 99.74
COG4096875 HsdR Type I site-specific restriction-modification 99.73
PF00270169 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 99.71
PRK13104896 secA preprotein translocase subunit SecA; Reviewed 99.7
KOG0329387 consensus ATP-dependent RNA helicase [RNA processi 99.69
KOG09491330 consensus Predicted helicase, DEAD-box superfamily 99.69
cd00268203 DEADc DEAD-box helicases. A diverse family of prot 99.67
PRK12904830 preprotein translocase subunit SecA; Reviewed 99.67
KOG0349725 consensus Putative DEAD-box RNA helicase DDX1 [RNA 99.65
smart0084792 HA2 Helicase associated domain (HA2) Add an annota 99.64
TIGR00348667 hsdR type I site-specific deoxyribonuclease, HsdR 99.64
PRK12906796 secA preprotein translocase subunit SecA; Reviewed 99.63
COG1198730 PriA Primosomal protein N' (replication factor Y) 99.62
PRK13107908 preprotein translocase subunit SecA; Reviewed 99.56
PRK12899970 secA preprotein translocase subunit SecA; Reviewed 99.56
PLN031421033 Probable chromatin-remodeling complex ATPase chain 99.53
KOG0953700 consensus Mitochondrial RNA helicase SUV3, DEAD-bo 99.49
smart00487201 DEXDc DEAD-like helicases superfamily. 99.47
COG1110 1187 Reverse gyrase [DNA replication, recombination, an 99.46
TIGR01407850 dinG_rel DnaQ family exonuclease/DinG family helic 99.45
cd00046144 DEXDc DEAD-like helicases superfamily. A diverse f 99.43
TIGR025621110 cas3_yersinia CRISPR-associated helicase Cas3. The 99.4
PF07652148 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR 99.35
PF04851184 ResIII: Type III restriction enzyme, res subunit; 99.33
cd00079131 HELICc Helicase superfamily c-terminal domain; ass 99.33
KOG1123776 consensus RNA polymerase II transcription initiati 99.29
KOG41501034 consensus Predicted ATP-dependent RNA helicase [RN 99.28
PRK12326764 preprotein translocase subunit SecA; Reviewed 99.28
PRK07246820 bifunctional ATP-dependent DNA helicase/DNA polyme 99.23
PF0027178 Helicase_C: Helicase conserved C-terminal domain; 99.2
TIGR00631655 uvrb excinuclease ABC, B subunit. This family is b 99.19
PRK05298652 excinuclease ABC subunit B; Provisional 99.15
KOG09511674 consensus RNA helicase BRR2, DEAD-box superfamily 99.09
KOG0385971 consensus Chromatin remodeling complex WSTF-ISWI, 99.08
PRK13103913 secA preprotein translocase subunit SecA; Reviewed 99.06
PRK129001025 secA preprotein translocase subunit SecA; Reviewed 99.05
KOG0387923 consensus Transcription-coupled repair protein CSB 99.04
PRK08074928 bifunctional ATP-dependent DNA helicase/DNA polyme 99.03
smart0049082 HELICc helicase superfamily c-terminal domain. 98.98
PRK12903925 secA preprotein translocase subunit SecA; Reviewed 98.92
KOG0390776 consensus DNA repair protein, SNF2 family [Replica 98.92
PRK14873665 primosome assembly protein PriA; Provisional 98.92
CHL00122870 secA preprotein translocase subunit SecA; Validate 98.9
PF02399824 Herpes_ori_bp: Origin of replication binding prote 98.9
COG4889 1518 Predicted helicase [General function prediction on 98.76
KOG03841373 consensus Chromodomain-helicase DNA-binding protei 98.74
COG0556663 UvrB Helicase subunit of the DNA excision repair c 98.71
KOG03921549 consensus SNF2 family DNA-dependent ATPase domain- 98.71
PRK12902939 secA preprotein translocase subunit SecA; Reviewed 98.63
TIGR00604705 rad3 DNA repair helicase (rad3). All proteins in t 98.63
cd0004868 DSRM Double-stranded RNA binding motif. Binding is 98.51
smart0035867 DSRM Double-stranded RNA binding motif. 98.42
KOG1000689 consensus Chromatin remodeling protein HARP/SMARCA 98.41
PF0003567 dsrm: Double-stranded RNA binding motif; InterPro: 98.41
PHA02701183 ORF020 dsRNA-binding PKR inhibitor; Provisional 98.4
TIGR03117636 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase 98.38
PHA03103183 double-strand RNA-binding protein; Provisional 98.38
PF00176299 SNF2_N: SNF2 family N-terminal domain; InterPro: I 98.28
COG0610962 Type I site-specific restriction-modification syst 98.13
PRK12371235 ribonuclease III; Reviewed 98.12
PRK14718 467 ribonuclease III; Provisional 98.11
PRK12372 413 ribonuclease III; Reviewed 98.08
PF00448196 SRP54: SRP54-type protein, GTPase domain; InterPro 98.05
PRK12723388 flagellar biosynthesis regulator FlhF; Provisional 98.02
PF13401131 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S 98.0
PRK00102229 rnc ribonuclease III; Reviewed 97.96
PF1324576 AAA_19: Part of AAA domain 97.92
TIGR00596814 rad1 DNA repair protein (rad1). This family is bas 97.88
KOG0389941 consensus SNF2 family DNA-dependent ATPase [Chroma 97.83
PF13604196 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL 97.81
COG1419407 FlhF Flagellar GTP-binding protein [Cell motility 97.75
PF02562205 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH 97.71
COG0571235 Rnc dsRNA-specific ribonuclease [Transcription] 97.68
PF1470980 DND1_DSRM: double strand RNA binding domain from D 97.68
PRK129011112 secA preprotein translocase subunit SecA; Reviewed 97.67
TIGR01447586 recD exodeoxyribonuclease V, alpha subunit. This f 97.66
PRK11889436 flhF flagellar biosynthesis regulator FlhF; Provis 97.63
TIGR02191220 RNaseIII ribonuclease III, bacterial. This family 97.6
PRK10536262 hypothetical protein; Provisional 97.59
PRK10875615 recD exonuclease V subunit alpha; Provisional 97.56
PRK14722374 flhF flagellar biosynthesis regulator FlhF; Provis 97.56
KOG03861157 consensus Chromatin remodeling complex SWI/SNF, co 97.56
KOG1002791 consensus Nucleotide excision repair protein RAD16 97.56
COG0553866 HepA Superfamily II DNA/RNA helicases, SNF2 family 97.55
KOG1803649 consensus DNA helicase [Replication, recombination 97.55
PRK11747697 dinG ATP-dependent DNA helicase DinG; Provisional 97.53
PRK05703424 flhF flagellar biosynthesis regulator FlhF; Valida 97.44
PRK12726407 flagellar biosynthesis regulator FlhF; Provisional 97.42
COG0653822 SecA Preprotein translocase subunit SecA (ATPase, 97.36
cd00009151 AAA The AAA+ (ATPases Associated with a wide varie 97.36
TIGR01448720 recD_rel helicase, putative, RecD/TraA family. Thi 97.36
PF06862442 DUF1253: Protein of unknown function (DUF1253); In 97.35
PF09848352 DUF2075: Uncharacterized conserved protein (DUF207 97.34
PF05729166 NACHT: NACHT domain 97.3
PRK12724432 flagellar biosynthesis regulator FlhF; Provisional 97.17
PRK14974336 cell division protein FtsY; Provisional 97.16
PRK12727559 flagellar biosynthesis regulator FlhF; Provisional 97.15
PRK06526254 transposase; Provisional 97.13
PRK15483986 type III restriction-modification system StyLTI en 97.12
PRK04296190 thymidine kinase; Provisional 97.1
PF12340229 DUF3638: Protein of unknown function (DUF3638); In 97.08
PF07517266 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011 97.04
TIGR02768744 TraA_Ti Ti-type conjugative transfer relaxase TraA 97.01
smart00489289 DEXDc3 DEAD-like helicases superfamily. 96.97
smart00488289 DEXDc2 DEAD-like helicases superfamily. 96.97
PRK08181269 transposase; Validated 96.96
PF13086236 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV 96.94
PF13872303 AAA_34: P-loop containing NTP hydrolase pore-1 96.92
PHA03333752 putative ATPase subunit of terminase; Provisional 96.88
PF05970364 PIF1: PIF1-like helicase; InterPro: IPR010285 This 96.86
PRK13889988 conjugal transfer relaxase TraA; Provisional 96.84
PF13307167 Helicase_C_2: Helicase C-terminal domain; PDB: 4A1 96.79
PRK14723767 flhF flagellar biosynthesis regulator FlhF; Provis 96.78
PRK14721420 flhF flagellar biosynthesis regulator FlhF; Provis 96.7
PRK06731270 flhF flagellar biosynthesis regulator FlhF; Valida 96.7
PRK10416318 signal recognition particle-docking protein FtsY; 96.66
PRK07003830 DNA polymerase III subunits gamma and tau; Validat 96.63
PF00580315 UvrD-helicase: UvrD/REP helicase N-terminal domain 96.58
PF05127177 Helicase_RecD: Helicase; InterPro: IPR007807 This 96.55
PF13173128 AAA_14: AAA domain 96.55
smart00382148 AAA ATPases associated with a variety of cellular 96.54
PRK06835329 DNA replication protein DnaC; Validated 96.52
KOG03911958 consensus SNF2 family DNA-dependent ATPase [Genera 96.51
PRK06995484 flhF flagellar biosynthesis regulator FlhF; Valida 96.51
PRK00771437 signal recognition particle protein Srp54; Provisi 96.47
KOG09521230 consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup 96.43
COG1199654 DinG Rad3-related DNA helicases [Transcription / D 96.4
TIGR03499282 FlhF flagellar biosynthetic protein FlhF. 96.37
TIGR00064272 ftsY signal recognition particle-docking protein F 96.35
PRK09183259 transposase/IS protein; Provisional 96.23
TIGR00376637 DNA helicase, putative. The gene product may repre 96.18
PRK14956484 DNA polymerase III subunits gamma and tau; Provisi 96.18
TIGR03420226 DnaA_homol_Hda DnaA regulatory inactivator Hda. Me 96.15
PRK07952244 DNA replication protein DnaC; Validated 96.13
PRK08116268 hypothetical protein; Validated 96.13
TIGR03015269 pepcterm_ATPase putative secretion ATPase, PEP-CTE 96.07
PRK08903227 DnaA regulatory inactivator Hda; Validated 96.05
KOG4439901 consensus RNA polymerase II transcription terminat 96.02
PRK08691709 DNA polymerase III subunits gamma and tau; Validat 95.99
TIGR01425429 SRP54_euk signal recognition particle protein SRP5 95.98
PRK14949944 DNA polymerase III subunits gamma and tau; Provisi 95.97
PRK138261102 Dtr system oriT relaxase; Provisional 95.91
TIGR02640262 gas_vesic_GvpN gas vesicle protein GvpN. Members o 95.9
PRK14961363 DNA polymerase III subunits gamma and tau; Provisi 95.89
PRK07764824 DNA polymerase III subunits gamma and tau; Validat 95.88
PRK10867433 signal recognition particle protein; Provisional 95.88
PRK12402337 replication factor C small subunit 2; Reviewed 95.88
PRK07994647 DNA polymerase III subunits gamma and tau; Validat 95.87
PRK14957546 DNA polymerase III subunits gamma and tau; Provisi 95.86
PRK09112351 DNA polymerase III subunit delta'; Validated 95.83
PF01695178 IstB_IS21: IstB-like ATP binding protein; InterPro 95.83
PRK12323700 DNA polymerase III subunits gamma and tau; Provisi 95.81
KOG1802935 consensus RNA helicase nonsense mRNA reducing fact 95.77
TIGR00959428 ffh signal recognition particle protein. This mode 95.72
PRK12377248 putative replication protein; Provisional 95.71
cd03115173 SRP The signal recognition particle (SRP) mediates 95.69
PRK08727233 hypothetical protein; Validated 95.67
TIGR00678188 holB DNA polymerase III, delta' subunit. At positi 95.64
PRK14958509 DNA polymerase III subunits gamma and tau; Provisi 95.61
PRK14952584 DNA polymerase III subunits gamma and tau; Provisi 95.61
PRK00411394 cdc6 cell division control protein 6; Reviewed 95.6
KOG2340698 consensus Uncharacterized conserved protein [Funct 95.57
KOG2373514 consensus Predicted mitochondrial DNA helicase twi 95.54
PRK14951618 DNA polymerase III subunits gamma and tau; Provisi 95.5
PRK14964491 DNA polymerase III subunits gamma and tau; Provisi 95.49
PRK06893229 DNA replication initiation factor; Validated 95.48
PTZ001121164 origin recognition complex 1 protein; Provisional 95.47
PRK14963504 DNA polymerase III subunits gamma and tau; Provisi 95.45
PRK06921266 hypothetical protein; Provisional 95.39
PRK14960702 DNA polymerase III subunits gamma and tau; Provisi 95.38
cd01124187 KaiC KaiC is a circadian clock protein primarily f 95.37
cd01120165 RecA-like_NTPases RecA-like NTPases. This family i 95.35
COG1474366 CDC6 Cdc6-related protein, AAA superfamily ATPase 95.31
PF13177162 DNA_pol3_delta2: DNA polymerase III, delta subunit 95.25
PRK09111598 DNA polymerase III subunits gamma and tau; Validat 95.24
TIGR02928365 orc1/cdc6 family replication initiation protein. M 95.22
PRK05642234 DNA replication initiation factor; Validated 95.21
PRK00149450 dnaA chromosomal replication initiation protein; R 95.17
PRK14969527 DNA polymerase III subunits gamma and tau; Provisi 95.17
PRK11331459 5-methylcytosine-specific restriction enzyme subun 95.15
COG1484254 DnaC DNA replication protein [DNA replication, rec 95.14
PRK11747697 dinG ATP-dependent DNA helicase DinG; Provisional 95.14
PHA02533534 17 large terminase protein; Provisional 95.1
KOG0989346 consensus Replication factor C, subunit RFC4 [Repl 95.09
TIGR02760 1960 TraI_TIGR conjugative transfer relaxase protein Tr 95.08
PRK08533230 flagellar accessory protein FlaH; Reviewed 95.04
PRK14962472 DNA polymerase III subunits gamma and tau; Provisi 95.04
COG1875436 NYN ribonuclease and ATPase of PhoH family domains 95.04
PRK07471365 DNA polymerase III subunit delta'; Validated 95.03
KOG3732 339 consensus Staufen and related double-stranded-RNA- 94.99
PHA02544316 44 clamp loader, small subunit; Provisional 94.97
KOG2777 542 consensus tRNA-specific adenosine deaminase 1 [RNA 94.94
COG3421812 Uncharacterized protein conserved in bacteria [Fun 94.94
PF01637234 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 94.94
PF05621302 TniB: Bacterial TniB protein; InterPro: IPR008868 94.92
PHA03368738 DNA packaging terminase subunit 1; Provisional 94.89
PHA02244383 ATPase-like protein 94.88
PRK08939306 primosomal protein DnaI; Reviewed 94.87
PF03354477 Terminase_1: Phage Terminase ; InterPro: IPR005021 94.86
PRK06645507 DNA polymerase III subunits gamma and tau; Validat 94.86
PRK14959624 DNA polymerase III subunits gamma and tau; Provisi 94.85
PRK14955397 DNA polymerase III subunits gamma and tau; Provisi 94.84
TIGR00362405 DnaA chromosomal replication initiator protein Dna 94.82
PRK05896605 DNA polymerase III subunits gamma and tau; Validat 94.78
PF00308219 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013 94.78
PRK14965576 DNA polymerase III subunits gamma and tau; Provisi 94.75
PRK05707328 DNA polymerase III subunit delta'; Validated 94.71
KOG03881185 consensus SNF2 family DNA-dependent ATPase [Replic 94.68
TIGR02881261 spore_V_K stage V sporulation protein K. Members o 94.67
PRK14087450 dnaA chromosomal replication initiation protein; P 94.63
PRK07940394 DNA polymerase III subunit delta'; Validated 94.59
PF00004132 AAA: ATPase family associated with various cellula 94.57
PRK08084235 DNA replication initiation factor; Provisional 94.56
COG3587985 Restriction endonuclease [Defense mechanisms] 94.53
PRK00440319 rfc replication factor C small subunit; Reviewed 94.51
PRK14950585 DNA polymerase III subunits gamma and tau; Provisi 94.47
PRK08451535 DNA polymerase III subunits gamma and tau; Validat 94.45
PRK13833323 conjugal transfer protein TrbB; Provisional 94.35
COG1444758 Predicted P-loop ATPase fused to an acetyltransfer 94.29
COG2804500 PulE Type II secretory pathway, ATPase PulE/Tfp pi 94.29
PLN03025319 replication factor C subunit; Provisional 94.23
TIGR02782299 TrbB_P P-type conjugative transfer ATPase TrbB. Th 94.22
TIGR03878259 thermo_KaiC_2 KaiC domain protein, AF_0795 family. 94.21
COG1219408 ClpX ATP-dependent protease Clp, ATPase subunit [P 94.19
PRK06067234 flagellar accessory protein FlaH; Validated 94.13
PRK14088440 dnaA chromosomal replication initiation protein; P 94.12
PRK14948620 DNA polymerase III subunits gamma and tau; Provisi 94.07
COG0470325 HolB ATPase involved in DNA replication [DNA repli 94.06
PRK07133725 DNA polymerase III subunits gamma and tau; Validat 93.99
cd01122271 GP4d_helicase GP4d_helicase is a homohexameric 5'- 93.93
COG3973747 Superfamily I DNA and RNA helicases [General funct 93.93
COG1199654 DinG Rad3-related DNA helicases [Transcription / D 93.86
PF00931287 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is 93.85
PRK05563559 DNA polymerase III subunits gamma and tau; Validat 93.79
TIGR03345852 VI_ClpV1 type VI secretion ATPase, ClpV1 family. M 93.78
COG2256436 MGS1 ATPase related to the helicase subunit of the 93.78
PRK14953486 DNA polymerase III subunits gamma and tau; Provisi 93.68
COG1435201 Tdk Thymidine kinase [Nucleotide transport and met 93.58
TIGR01547396 phage_term_2 phage terminase, large subunit, PBSX 93.54
PRK06620214 hypothetical protein; Validated 93.48
TIGR02397355 dnaX_nterm DNA polymerase III, subunit gamma and t 93.41
PRK12422445 chromosomal replication initiation protein; Provis 93.41
KOG0991333 consensus Replication factor C, subunit RFC2 [Repl 93.41
TIGR02880284 cbbX_cfxQ probable Rubsico expression protein CbbX 93.38
PRK09087226 hypothetical protein; Validated 93.36
PF05496233 RuvB_N: Holliday junction DNA helicase ruvB N-term 93.28
PRK04195482 replication factor C large subunit; Provisional 93.25
COG0552340 FtsY Signal recognition particle GTPase [Intracell 93.24
PF01443234 Viral_helicase1: Viral (Superfamily 1) RNA helicas 93.21
PTZ00293211 thymidine kinase; Provisional 93.19
PF00437270 T2SE: Type II/IV secretion system protein; InterPr 93.18
PRK13894319 conjugal transfer ATPase TrbB; Provisional 93.17
COG4626546 Phage terminase-like protein, large subunit [Gener 93.11
PRK13851344 type IV secretion system protein VirB11; Provision 93.09
PRK14970367 DNA polymerase III subunits gamma and tau; Provisi 93.08
PRK14954620 DNA polymerase III subunits gamma and tau; Provisi 93.0
PRK11054684 helD DNA helicase IV; Provisional 92.99
CHL00181287 cbbX CbbX; Provisional 92.96
TIGR02655484 circ_KaiC circadian clock protein KaiC. Members of 92.95
PRK04841903 transcriptional regulator MalT; Provisional 92.92
KOG0391 1958 consensus SNF2 family DNA-dependent ATPase [Genera 92.88
COG0541451 Ffh Signal recognition particle GTPase [Intracellu 92.83
KOG18051100 consensus DNA replication helicase [Replication, r 92.82
PRK10919672 ATP-dependent DNA helicase Rep; Provisional 92.75
PRK14086617 dnaA chromosomal replication initiation protein; P 92.66
COG1618179 Predicted nucleotide kinase [Nucleotide transport 92.65
PRK14971614 DNA polymerase III subunits gamma and tau; Provisi 92.5
PRK10865857 protein disaggregation chaperone; Provisional 92.49
KOG3732 339 consensus Staufen and related double-stranded-RNA- 92.47
PRK08058329 DNA polymerase III subunit delta'; Validated 92.45
PRK06647563 DNA polymerase III subunits gamma and tau; Validat 92.39
PRK147121623 conjugal transfer nickase/helicase TraI; Provision 92.38
PRK07399314 DNA polymerase III subunit delta'; Validated 92.29
PRK06964342 DNA polymerase III subunit delta'; Validated 92.2
PRK08769319 DNA polymerase III subunit delta'; Validated 92.14
TIGR01075715 uvrD DNA helicase II. Designed to identify uvrD me 92.13
PF1355562 AAA_29: P-loop containing region of AAA domain 92.12
PRK13900332 type IV secretion system ATPase VirB11; Provisiona 92.09
PF06745226 KaiC: KaiC; InterPro: IPR014774 This entry represe 92.03
PRK06871325 DNA polymerase III subunit delta'; Validated 92.01
TIGR027601960 TraI_TIGR conjugative transfer relaxase protein Tr 91.98
TIGR02974329 phageshock_pspF psp operon transcriptional activat 91.96
KOG1132945 consensus Helicase of the DEAD superfamily [Replic 91.95
cd01130186 VirB11-like_ATPase Type IV secretory pathway compo 91.9
TIGR02524358 dot_icm_DotB Dot/Icm secretion system ATPase DotB. 91.89
PRK13342413 recombination factor protein RarA; Reviewed 91.83
PRK11823446 DNA repair protein RadA; Provisional 91.8
cd01128249 rho_factor Transcription termination factor rho is 91.79
PF0336890 Dicer_dimer: Dicer dimerisation domain; InterPro: 91.77
PRK11773721 uvrD DNA-dependent helicase II; Provisional 91.76
PF03266168 NTPase_1: NTPase; InterPro: IPR004948 This entry r 91.73
TIGR01074664 rep ATP-dependent DNA helicase Rep. Designed to id 91.73
PRK137091747 conjugal transfer nickase/helicase TraI; Provision 91.73
PF00158168 Sigma54_activat: Sigma-54 interaction domain; Inte 91.72
PHA00729226 NTP-binding motif containing protein 91.68
TIGR00767415 rho transcription termination factor Rho. Members 91.62
COG2805353 PilT Tfp pilus assembly protein, pilus retraction 91.59
TIGR03877237 thermo_KaiC_1 KaiC domain protein, Ph0284 family. 91.37
cd01393226 recA_like RecA is a bacterial enzyme which has rol 91.36
COG0556663 UvrB Helicase subunit of the DNA excision repair c 91.32
COG0593408 DnaA ATPase involved in DNA replication initiation 91.29
PRK05564313 DNA polymerase III subunit delta'; Validated 91.27
PRK129001025 secA preprotein translocase subunit SecA; Reviewed 91.16
cd01121372 Sms Sms (bacterial radA) DNA repair protein. This 91.13
COG3267269 ExeA Type II secretory pathway, component ExeA (pr 91.08
PF14532138 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 91.01
COG4962355 CpaF Flp pilus assembly protein, ATPase CpaF [Intr 90.89
TIGR02688449 conserved hypothetical protein TIGR02688. Members 90.84
PRK04328249 hypothetical protein; Provisional 90.57
PRK00080328 ruvB Holliday junction DNA helicase RuvB; Reviewed 90.54
PRK05973237 replicative DNA helicase; Provisional 90.53
COG0467260 RAD55 RecA-superfamily ATPases implicated in signa 90.53
TIGR03346852 chaperone_ClpB ATP-dependent chaperone ClpB. Membe 90.49
cd01129264 PulE-GspE PulE/GspE The type II secretory pathway 90.43
PRK06090319 DNA polymerase III subunit delta'; Validated 90.37
PF03237384 Terminase_6: Terminase-like family; InterPro: IPR0 90.22
COG1221403 PspF Transcriptional regulators containing an AAA- 89.99
PHA00149331 DNA encapsidation protein 89.98
PRK13341725 recombination factor protein RarA/unknown domain f 89.82
cd01131198 PilT Pilus retraction ATPase PilT. PilT is a nucle 89.81
PF13207121 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6 89.73
KOG2028554 consensus ATPase related to the helicase subunit o 89.71
PRK129011112 secA preprotein translocase subunit SecA; Reviewed 89.71
TIGR02525372 plasmid_TraJ plasmid transfer ATPase TraJ. Members 89.6
TIGR01073726 pcrA ATP-dependent DNA helicase PcrA. Designed to 89.54
PRK06305451 DNA polymerase III subunits gamma and tau; Validat 89.39
KOG0780483 consensus Signal recognition particle, subunit Srp 89.27
COG0542786 clpA ATP-binding subunits of Clp protease and DnaK 89.22
PF05894333 Podovirus_Gp16: Podovirus DNA encapsidation protei 89.2
TIGR00602637 rad24 checkpoint protein rad24. This family is bas 89.2
PRK13695174 putative NTPase; Provisional 89.12
PRK10436462 hypothetical protein; Provisional 88.96
cd00544169 CobU Adenosylcobinamide kinase / adenosylcobinamid 88.96
COG2909894 MalT ATP-dependent transcriptional regulator [Tran 88.93
cd00983325 recA RecA is a bacterial enzyme which has roles in 88.92
TIGR02639731 ClpA ATP-dependent Clp protease ATP-binding subuni 88.9
TIGR02785 1232 addA_Gpos recombination helicase AddA, Firmicutes 88.89
PF12846304 AAA_10: AAA-like domain 88.87
KOG0741744 consensus AAA+-type ATPase [Posttranslational modi 88.78
PF00265176 TK: Thymidine kinase; InterPro: IPR001267 Thymidin 88.49
COG1126240 GlnQ ABC-type polar amino acid transport system, A 88.15
TIGR03881229 KaiC_arch_4 KaiC domain protein, PAE1156 family. M 88.13
TIGR02655484 circ_KaiC circadian clock protein KaiC. Members of 88.11
cd03247178 ABCC_cytochrome_bd The CYD subfamily implicated in 88.05
TIGR02639731 ClpA ATP-dependent Clp protease ATP-binding subuni 88.03
cd00267157 ABC_ATPase ABC (ATP-binding cassette) transporter 88.0
TIGR02788308 VirB11 P-type DNA transfer ATPase VirB11. The VirB 87.97
COG2812515 DnaX DNA polymerase III, gamma/tau subunits [DNA r 87.85
PRK09376416 rho transcription termination factor Rho; Provisio 87.78
TIGR01817534 nifA Nif-specific regulatory protein. This model r 87.78
PRK13764602 ATPase; Provisional 87.75
KOG2543438 consensus Origin recognition complex, subunit 5 [R 87.64
TIGR03689512 pup_AAA proteasome ATPase. In the Actinobacteria, 87.57
cd03221144 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is 87.57
CHL00095821 clpC Clp protease ATP binding subunit 87.52
TIGR02538564 type_IV_pilB type IV-A pilus assembly ATPase PilB. 87.51
TIGR01420343 pilT_fam pilus retraction protein PilT. This model 87.43
PF03969362 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 87.41
COG1110 1187 Reverse gyrase [DNA replication, recombination, an 87.24
PF13671143 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1 87.16
cd00984242 DnaB_C DnaB helicase C terminal domain. The hexame 86.99
TIGR00763775 lon ATP-dependent protease La. This protein is ind 86.76
TIGR03263180 guanyl_kin guanylate kinase. Members of this famil 86.72
PF13238129 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB 86.67
COG2255332 RuvB Holliday junction resolvasome, helicase subun 86.65
PRK08760476 replicative DNA helicase; Provisional 86.6
PRK05022509 anaerobic nitric oxide reductase transcription reg 86.56
TIGR03880224 KaiC_arch_3 KaiC domain protein, AF_0351 family. T 86.45
TIGR02237209 recomb_radB DNA repair and recombination protein R 86.41
PF12775272 AAA_7: P-loop containing dynein motor region D3; P 86.39
TIGR02533486 type_II_gspE general secretory pathway protein E. 86.32
PRK07993334 DNA polymerase III subunit delta'; Validated 86.12
PF13481193 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C. 86.08
TIGR02868529 CydC thiol reductant ABC exporter, CydC subunit. T 86.06
KOG10151567 consensus Transcription regulator XNP/ATRX, DEAD-b 85.95
COG3598402 RepA RecA-family ATPase [DNA replication, recombin 85.94
TIGR00750300 lao LAO/AO transport system ATPase. Mutations have 85.92
CHL00176638 ftsH cell division protein; Validated 85.87
PRK05917290 DNA polymerase III subunit delta'; Validated 85.83
PF05876557 Terminase_GpA: Phage terminase large subunit (GpA) 85.72
PRK00300205 gmk guanylate kinase; Provisional 85.72
cd02034116 CooC The accessory protein CooC, which contains a 85.7
cd01394218 radB RadB. The archaeal protein radB shares simila 85.69
PF01580205 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR00 85.66
COG0630312 VirB11 Type IV secretory pathway, VirB11 component 85.66
COG5008375 PilU Tfp pilus assembly protein, ATPase PilU [Cell 85.47
cd03228171 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein 85.46
PF10443431 RNA12: RNA12 protein; InterPro: IPR018850 Mitochon 85.46
PRK10787784 DNA-binding ATP-dependent protease La; Provisional 85.43
COG1136226 SalX ABC-type antimicrobial peptide transport syst 85.43
COG1074 1139 RecB ATP-dependent exoDNAse (exonuclease V) beta s 85.2
KOG1817533 consensus Ribonuclease [RNA processing and modific 85.09
KOG2228408 consensus Origin recognition complex, subunit 4 [R 85.04
PRK08233182 hypothetical protein; Provisional 84.91
PF07728139 AAA_5: AAA domain (dynein-related subfamily); Inte 84.84
TIGR01650327 PD_CobS cobaltochelatase, CobS subunit. This model 84.82
cd00071137 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7. 84.71
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification] Back     alignment and domain information 
Probab=100.00  E-value=1e-149  Score=1316.53  Aligned_cols=735  Identities=53%  Similarity=0.881  Sum_probs=678.7

Q ss_pred             ChhhhcCCCcHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHH
Q 046397            1 MLEFRRNLPAYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASE   80 (901)
Q Consensus         1 ~~~~r~~LPi~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e   80 (901)
                      |+++|.+||+|+++++|++++.++++++|+|+||||||||+|||||+..+..+  +.|+|+||||||++|+++|+||++|
T Consensus       165 ~~~~R~~LPa~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~--~~~~IicTQPRRIsAIsvAeRVa~E  242 (924)
T KOG0920|consen  165 MLRFRESLPAYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESG--AACNIICTQPRRISAISVAERVAKE  242 (924)
T ss_pred             HHHHHHhCccHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcC--CCCeEEecCCchHHHHHHHHHHHHH
Confidence            57899999999999999999999999999999999999999999999998765  7899999999999999999999999


Q ss_pred             hCCccCcEeeEEEecccccCCCceEEEEcHHHHHHHHhcCCCCCCceEEEEecCcccCcchhHHHHHHHHHHhhCCCceE
Q 046397           81 RGEKLGESVGYKVRLEGMKGRDTRLLFCTTGILLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRPELRL  160 (901)
Q Consensus        81 ~~~~~g~~vGy~vr~e~~~~~~t~Ii~~T~g~Llr~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~~~ki  160 (901)
                      +++.+|..|||+||+++..+..++|+|||+|+|||.|+.++.+.+++|||+||+|||++++||++.+++.++.++|++|+
T Consensus       243 R~~~~g~~VGYqvrl~~~~s~~t~L~fcTtGvLLr~L~~~~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p~Lkv  322 (924)
T KOG0920|consen  243 RGESLGEEVGYQVRLESKRSRETRLLFCTTGVLLRRLQSDPTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNPDLKV  322 (924)
T ss_pred             hccccCCeeeEEEeeecccCCceeEEEecHHHHHHHhccCcccccCceeeeeeEEEccCCcccHHHHHHHHhhhCCCceE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeccCCCHHHHHhhhCCCcEEeeCCccccceEEeccchhhhcccccCCCCCCcchhhHHHhHhhcccchhhhhhhHHHH
Q 046397          161 VLMSATLDAELFSSYFGGATVINIPGFTYPVRTHFLEDILDMTGYRLTPYNQIDDYGQEKMWKMSKQAPRKRKSQIASAV  240 (901)
Q Consensus       161 IlmSATl~~~~f~~yf~~~~~i~i~gr~~pV~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  240 (901)
                      |+||||+|++.|++||++||+++|+|++|||..+|+||++..++|........  .+           +..  .      
T Consensus       323 ILMSAT~dae~fs~YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~--~~-----------~~~--~------  381 (924)
T KOG0920|consen  323 ILMSATLDAELFSDYFGGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSAR--SG-----------PER--S------  381 (924)
T ss_pred             EEeeeecchHHHHHHhCCCceEeecCCCcchHHHHHHHHHHHhcccccccccc--cc-----------ccc--C------
Confidence            99999999999999999999999999999999999999999998876543322  00           000  0      


Q ss_pred             HHHHHhhcccccchhhhhhcccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEcCCHHHHHHHHHHHHhCccCCCCCceEE
Q 046397          241 EDTLKAANFNEYSSQTRESLSCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTGWDDINSLNDKLQANRILGDPTRVLL  320 (901)
Q Consensus       241 ~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v  320 (901)
                        .+..           ..+..|.++ ++++||+.++.+|+.....|+||||+||+++|..+.+.|..+..+.+..++.|
T Consensus       382 --~~~~-----------~~~~~~~~~-id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~i  447 (924)
T KOG0920|consen  382 --QLRL-----------ARLKLWEPE-IDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAI  447 (924)
T ss_pred             --cccc-----------ccchhcccc-ccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEE
Confidence              0000           002223333 99999999999999999899999999999999999999998877777788999


Q ss_pred             EEecCCCCHHHHHhhcCCCCCCCeEEEEecchhhcccCCCCeEEEEeCCCccccccccCCCccccccccccHhcHHHHhh
Q 046397          321 LTCHGSMASSEQRLIFDEPESGVRKIVLATNIAETSITINDVVFVIDCGKAKETSYDALNNTSCLLPSWISTVSAQQRRG  400 (901)
Q Consensus       321 ~~lhs~l~~~eq~~i~~~f~~g~~kIIvaTniaetGIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSka~~~QR~G  400 (901)
                      +++||.|+..||+.||..++.|.+|||+||||||||||||||.||||+|+.|++.||+..+++++...|+|||++.||+|
T Consensus       448 lplHs~~~s~eQ~~VF~~pp~g~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~G  527 (924)
T KOG0920|consen  448 LPLHSSIPSEEQQAVFKRPPKGTRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRG  527 (924)
T ss_pred             EeccccCChHHHHHhcCCCCCCcchhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCCCCceEEcCCcchhhhccc-CCCCcccccCccchhhhhhccCCCCHHHHhhhhcCCChHHHHHHHHHHHHHcCCc
Q 046397          401 RAGRVQPGECYRLYPRCVYDAFAE-YQLPEILRTPLQSLCLQIKSLRLGTIAGFLSRALQSPELLAVQNAIEYLKIIGAL  479 (901)
Q Consensus       401 RAGR~~~G~c~~L~s~~~~~~l~~-~~~PEi~r~~L~~~~L~~k~l~~~~~~~fl~~~l~pP~~~~v~~al~~L~~~gal  479 (901)
                      ||||+++|.|||||++.+|+.+.+ +++|||+|+||+++||++|.++++++.+||+++++||+..+|..|+..|..+|||
T Consensus       528 RAGRv~~G~cy~L~~~~~~~~~~~~~q~PEilR~pL~~l~L~iK~l~~~~~~~fLskaldpP~~~~v~~a~~~L~~igaL  607 (924)
T KOG0920|consen  528 RAGRVRPGICYHLYTRSRYEKLMLAYQLPEILRTPLEELCLHIKVLEQGSIKAFLSKALDPPPADAVDLAIERLKQIGAL  607 (924)
T ss_pred             cccCccCCeeEEeechhhhhhcccccCChHHHhChHHHhhheeeeccCCCHHHHHHHhcCCCChHHHHHHHHHHHHhccc
Confidence            999999999999999999999777 9999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCccchhhhhhhcCCCChHHHHHHHHhhhcCChHHHHHHHHhhcCCCCccCCCChHHHHHHHHhhcC-CCCCcHHHHH
Q 046397          480 DHNEELTVLGQYLAMLPMEPKLGKMLILGAIFNCLEPVLTIVAGLSVRDPFLAPMDKKDLAEAAKSQFS-HDYSDHLALV  558 (901)
Q Consensus       480 d~~~~lT~lG~~la~lpl~p~~~k~ll~~~~~~cl~~~l~iaa~ls~~~~f~~p~~~~~~~~~~~~~f~-~~~sDhl~~l  558 (901)
                      +.+++||+||++|+.||+||++|||+++|++|+|+||+++|||+|++++||+.|.++++.+++++..|+ +..|||||++
T Consensus       608 ~~~e~LT~LG~~la~lPvd~~igK~ll~g~if~cLdp~l~iaa~Ls~k~PF~~~~~~~~~~~~~~~~~~~~~~SD~la~~  687 (924)
T KOG0920|consen  608 DESEELTPLGLHLASLPVDVRIGKLLLFGAIFGCLDPALTIAAALSFKSPFVSPLGKREEADKAKKLLALDSISDHLAVV  687 (924)
T ss_pred             cCcccchHHHHHHHhCCCccccchhheehhhccccchhhhHHHHhccCCCcccCCCchhHHHHHHHHhccCCcchHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999998 5679999999


Q ss_pred             HHHHHHHHHhhc--ccchHHHHhhcCCCcchhhHHHHHHHHHHHHHhCCCCCCC------CCccccCCCCHHHHHHHHHh
Q 046397          559 RAFEGWKDAERG--LAGYEYCWKNFLSAPSMKVIDSLRKEFLSLLKDTGLVDCD------TSICNAWGRDERFIRAVICY  630 (901)
Q Consensus       559 ~af~~w~~~~~~--~~~~~~c~~~~l~~~~l~~~~~~r~ql~~~l~~~~~~~~~------~~~~n~~s~~~~li~a~l~a  630 (901)
                      +||++|++....  ....+||++||||..+|+++.++|.||.+.|.+.||++.+      .+.+|.++.|+++++++|||
T Consensus       688 ~ay~~w~~~~~~~~~~~~~fc~~~fLs~~~l~~i~~l~~q~~~~l~~~g~~~~~~~~~~~~~~~n~~s~~~~~iravl~a  767 (924)
T KOG0920|consen  688 RAYAGWREILRSGPSAEKDFCEENFLSSNTLQEISSLRVQFLELLSDIGLIPISSTAALTDSECNHNSQNPELVRAVLCA  767 (924)
T ss_pred             HHHHHHHHHHhccchHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhcccccCCcccccCchhhhhcCCCHHHHHHHHhc
Confidence            999999999876  5678999999999999999999999999999999998753      45688999999999999999


Q ss_pred             ccCCCcccccc---CCCCCccccccCCeEEEccCCccCCcCCCCCCeEEEEEEeeecc-eeEeccCCCChHHHHHhcCcc
Q 046397          631 GLYPGISSIVQ---NGKSSSLKTMEDGQVFLYSNSVNARESEIPYPWLVFNEKMKVNS-VFLKDSTAVSDSVLLLFGGSI  706 (901)
Q Consensus       631 glypnva~~~~---~~~~~~~~t~~~~~v~ihpsSv~~~~~~~~~~~lvy~e~~~t~~-~~ir~~t~V~p~~llLfgg~~  706 (901)
                      |||||++.+..   +.+...+.|..++.|+|||+|+|++...+..+|++|+|+++|++ +|+||+|.|++++++||||.+
T Consensus       768 ~lyP~i~~~~~~~~~~~~~~~~~~~~~~v~i~~~sv~~~~~~~~~p~l~~~~k~~t~~~~~~rd~T~v~~~~~llfgg~~  847 (924)
T KOG0920|consen  768 GLYPNIAFVRRMEPKSKSVTFVTKADGRVIIHPSSVNEQSTGFQSPFLVFPEKVKSTRLVSLRDTTSVSSSALLLFGGGI  847 (924)
T ss_pred             cCCCceeeeecccCCcCcceeecCCceeEEEecchhhccccccCCcceEEeeecccCCcceeeecCCCCcHHheeecCCc
Confidence            99999999875   45566788888899999999999998888889999999999999 999999999999999999987


Q ss_pred             c-cccccCcEEEE--CcEEEEEeChhHHHHHHHHHHHHHHHHHHHHcCCCCCC----CCchHHHHHHHHHHhc
Q 046397          707 S-QGEIDGHLKMM--GGYLEFFMNPSVADMYQCIRRELDELIQNKLLNPRLNI----HTHEDLLAAVRLLVAE  772 (901)
Q Consensus       707 ~-~~~~~~~~~~~--d~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~p~~~~----~~~~~~~~~i~~l~~~  772 (901)
                      . +...+|+..++  |+|+.|.+++.+|.+++.||..+|.+|++++++|....    ..+......+..++..
T Consensus       848 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~Lr~~l~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~  920 (924)
T KOG0920|consen  848 STVRMKSGSLALLLPDGWLRFKALPKTARLLKELRRELDSLLSKKIRSPCASLPDSSGKGSESPSLIANLLVG  920 (924)
T ss_pred             eeecCCCCccceecCCceEEeecchhHHHHHHHHHHHHHHHHHHhccCccccccccccccccchhhhhhhhhh
Confidence            7 55566776544  99999999999999999999999999999999999765    1234466666666654

>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional Back     alignment and domain information
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA Back     alignment and domain information
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription] Back     alignment and domain information
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB Back     alignment and domain information
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional Back     alignment and domain information
>PHA02653 RNA helicase NPH-II; Provisional Back     alignment and domain information
>PRK01172 ski2-like helicase; Provisional Back     alignment and domain information
>PRK02362 ski2-like helicase; Provisional Back     alignment and domain information
>PRK00254 ski2-like helicase; Provisional Back     alignment and domain information
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional Back     alignment and domain information
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional Back     alignment and domain information
>PTZ00110 helicase; Provisional Back     alignment and domain information
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional Back     alignment and domain information
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional Back     alignment and domain information
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional Back     alignment and domain information
>PTZ00424 helicase 45; Provisional Back     alignment and domain information
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG1204 Superfamily II helicase [General function prediction only] Back     alignment and domain information
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase Back     alignment and domain information
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only] Back     alignment and domain information
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family Back     alignment and domain information
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional Back     alignment and domain information
>PRK13767 ATP-dependent helicase; Provisional Back     alignment and domain information
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional Back     alignment and domain information
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification] Back     alignment and domain information
>KOG0343 consensus RNA Helicase [RNA processing and modification] Back     alignment and domain information
>KOG0354 consensus DEAD-box like helicase [General function prediction only] Back     alignment and domain information
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>TIGR01389 recQ ATP-dependent DNA helicase RecQ Back     alignment and domain information
>COG1201 Lhr Lhr-like helicases [General function prediction only] Back     alignment and domain information
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription] Back     alignment and domain information
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification] Back     alignment and domain information
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK09751 putative ATP-dependent helicase Lhr; Provisional Back     alignment and domain information
>TIGR00580 mfd transcription-repair coupling factor (mfd) Back     alignment and domain information
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK10917 ATP-dependent DNA helicase RecG; Provisional Back     alignment and domain information
>TIGR01587 cas3_core CRISPR-associated helicase Cas3 Back     alignment and domain information
>TIGR00643 recG ATP-dependent DNA helicase RecG Back     alignment and domain information
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK10689 transcription-repair coupling factor; Provisional Back     alignment and domain information
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0347 consensus RNA helicase [RNA processing and modification] Back     alignment and domain information
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype Back     alignment and domain information
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK13766 Hef nuclease; Provisional Back     alignment and domain information
>PHA02558 uvsW UvsW helicase; Provisional Back     alignment and domain information
>KOG0346 consensus RNA helicase [RNA processing and modification] Back     alignment and domain information
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type Back     alignment and domain information
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] Back     alignment and domain information
>KOG4284 consensus DEAD box protein [Transcription] Back     alignment and domain information
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification] Back     alignment and domain information
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>KOG0334 consensus RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>TIGR00603 rad25 DNA repair helicase rad25 Back     alignment and domain information
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK09401 reverse gyrase; Reviewed Back     alignment and domain information
>PRK05580 primosome assembly protein PriA; Validated Back     alignment and domain information
>PRK09694 helicase Cas3; Provisional Back     alignment and domain information
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR03714 secA2 accessory Sec system translocase SecA2 Back     alignment and domain information
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional Back     alignment and domain information
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK14701 reverse gyrase; Provisional Back     alignment and domain information
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] Back     alignment and domain information
>TIGR00595 priA primosomal protein N' Back     alignment and domain information
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair] Back     alignment and domain information
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>TIGR01054 rgy reverse gyrase Back     alignment and domain information
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only] Back     alignment and domain information
>PRK09200 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] Back     alignment and domain information
>TIGR00963 secA preprotein translocase, SecA subunit Back     alignment and domain information
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair] Back     alignment and domain information
>PRK04914 ATP-dependent helicase HepA; Validated Back     alignment and domain information
>PRK12898 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PF07717 OB_NTP_bind: Oligonucleotide/oligosaccharide-binding (OB)-fold; InterPro: IPR011709 This domain is found towards the C terminus of the DEAD-box helicases (IPR011545 from INTERPRO) Back     alignment and domain information
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only] Back     alignment and domain information
>PF04408 HA2: Helicase associated domain (HA2); InterPro: IPR007502 This presumed domain is about 90 amino acid residues in length Back     alignment and domain information
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms] Back     alignment and domain information
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] Back     alignment and domain information
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases Back     alignment and domain information
>PRK13104 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only] Back     alignment and domain information
>cd00268 DEADc DEAD-box helicases Back     alignment and domain information
>PRK12904 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification] Back     alignment and domain information
>smart00847 HA2 Helicase associated domain (HA2) Add an annotation Back     alignment and domain information
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family Back     alignment and domain information
>PRK12906 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK13107 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK12899 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional Back     alignment and domain information
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>smart00487 DEXDc DEAD-like helicases superfamily Back     alignment and domain information
>COG1110 Reverse gyrase [DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative Back     alignment and domain information
>cd00046 DEXDc DEAD-like helicases superfamily Back     alignment and domain information
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3 Back     alignment and domain information
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain Back     alignment and domain information
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3 Back     alignment and domain information
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process Back     alignment and domain information
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair] Back     alignment and domain information
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK12326 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins Back     alignment and domain information
>TIGR00631 uvrb excinuclease ABC, B subunit Back     alignment and domain information
>PRK05298 excinuclease ABC subunit B; Provisional Back     alignment and domain information
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription] Back     alignment and domain information
>PRK13103 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK12900 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair] Back     alignment and domain information
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>smart00490 HELICc helicase superfamily c-terminal domain Back     alignment and domain information
>PRK12903 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair] Back     alignment and domain information
>PRK14873 primosome assembly protein PriA; Provisional Back     alignment and domain information
>CHL00122 secA preprotein translocase subunit SecA; Validated Back     alignment and domain information
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein Back     alignment and domain information
>COG4889 Predicted helicase [General function prediction only] Back     alignment and domain information
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription] Back     alignment and domain information
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] Back     alignment and domain information
>PRK12902 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>TIGR00604 rad3 DNA repair helicase (rad3) Back     alignment and domain information
>cd00048 DSRM Double-stranded RNA binding motif Back     alignment and domain information
>smart00358 DSRM Double-stranded RNA binding motif Back     alignment and domain information
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics] Back     alignment and domain information
>PF00035 dsrm: Double-stranded RNA binding motif; InterPro: IPR001159 The DsRBD domain is found in a variety of RNA-binding proteins with different structures and exhibiting a diversity of functions [] Back     alignment and domain information
>PHA02701 ORF020 dsRNA-binding PKR inhibitor; Provisional Back     alignment and domain information
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4 Back     alignment and domain information
>PHA03103 double-strand RNA-binding protein; Provisional Back     alignment and domain information
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e Back     alignment and domain information
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] Back     alignment and domain information
>PRK12371 ribonuclease III; Reviewed Back     alignment and domain information
>PRK14718 ribonuclease III; Provisional Back     alignment and domain information
>PRK12372 ribonuclease III; Reviewed Back     alignment and domain information
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] Back     alignment and domain information
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B Back     alignment and domain information
>PRK00102 rnc ribonuclease III; Reviewed Back     alignment and domain information
>PF13245 AAA_19: Part of AAA domain Back     alignment and domain information
>TIGR00596 rad1 DNA repair protein (rad1) Back     alignment and domain information
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics] Back     alignment and domain information
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A Back     alignment and domain information
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion] Back     alignment and domain information
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [] Back     alignment and domain information
>COG0571 Rnc dsRNA-specific ribonuclease [Transcription] Back     alignment and domain information
>PF14709 DND1_DSRM: double strand RNA binding domain from DEAD END PROTEIN 1 Back     alignment and domain information
>PRK12901 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit Back     alignment and domain information
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>TIGR02191 RNaseIII ribonuclease III, bacterial Back     alignment and domain information
>PRK10536 hypothetical protein; Provisional Back     alignment and domain information
>PRK10875 recD exonuclease V subunit alpha; Provisional Back     alignment and domain information
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair] Back     alignment and domain information
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>KOG1803 consensus DNA helicase [Replication, recombination and repair] Back     alignment and domain information
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional Back     alignment and domain information
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated Back     alignment and domain information
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] Back     alignment and domain information
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold Back     alignment and domain information
>TIGR01448 recD_rel helicase, putative, RecD/TraA family Back     alignment and domain information
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ] Back     alignment and domain information
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function Back     alignment and domain information
>PF05729 NACHT: NACHT domain Back     alignment and domain information
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>PRK14974 cell division protein FtsY; Provisional Back     alignment and domain information
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>PRK06526 transposase; Provisional Back     alignment and domain information
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional Back     alignment and domain information
>PRK04296 thymidine kinase; Provisional Back     alignment and domain information
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length Back     alignment and domain information
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane Back     alignment and domain information
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA Back     alignment and domain information
>smart00489 DEXDc3 DEAD-like helicases superfamily Back     alignment and domain information
>smart00488 DEXDc2 DEAD-like helicases superfamily Back     alignment and domain information
>PRK08181 transposase; Validated Back     alignment and domain information
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A Back     alignment and domain information
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1 Back     alignment and domain information
>PHA03333 putative ATPase subunit of terminase; Provisional Back     alignment and domain information
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins Back     alignment and domain information
>PRK13889 conjugal transfer relaxase TraA; Provisional Back     alignment and domain information
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A Back     alignment and domain information
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated Back     alignment and domain information
>PRK10416 signal recognition particle-docking protein FtsY; Provisional Back     alignment and domain information
>PRK07003 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA Back     alignment and domain information
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase Back     alignment and domain information
>PF13173 AAA_14: AAA domain Back     alignment and domain information
>smart00382 AAA ATPases associated with a variety of cellular activities Back     alignment and domain information
>PRK06835 DNA replication protein DnaC; Validated Back     alignment and domain information
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only] Back     alignment and domain information
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated Back     alignment and domain information
>PRK00771 signal recognition particle protein Srp54; Provisional Back     alignment and domain information
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR03499 FlhF flagellar biosynthetic protein FlhF Back     alignment and domain information
>TIGR00064 ftsY signal recognition particle-docking protein FtsY Back     alignment and domain information
>PRK09183 transposase/IS protein; Provisional Back     alignment and domain information
>TIGR00376 DNA helicase, putative Back     alignment and domain information
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda Back     alignment and domain information
>PRK07952 DNA replication protein DnaC; Validated Back     alignment and domain information
>PRK08116 hypothetical protein; Validated Back     alignment and domain information
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily Back     alignment and domain information
>PRK08903 DnaA regulatory inactivator Hda; Validated Back     alignment and domain information
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair] Back     alignment and domain information
>PRK08691 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>TIGR01425 SRP54_euk signal recognition particle protein SRP54 Back     alignment and domain information
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK13826 Dtr system oriT relaxase; Provisional Back     alignment and domain information
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN Back     alignment and domain information
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK07764 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK10867 signal recognition particle protein; Provisional Back     alignment and domain information
>PRK12402 replication factor C small subunit 2; Reviewed Back     alignment and domain information
>PRK07994 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK09112 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif Back     alignment and domain information
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification] Back     alignment and domain information
>TIGR00959 ffh signal recognition particle protein Back     alignment and domain information
>PRK12377 putative replication protein; Provisional Back     alignment and domain information
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes Back     alignment and domain information
>PRK08727 hypothetical protein; Validated Back     alignment and domain information
>TIGR00678 holB DNA polymerase III, delta' subunit Back     alignment and domain information
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK00411 cdc6 cell division control protein 6; Reviewed Back     alignment and domain information
>KOG2340 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2373 consensus Predicted mitochondrial DNA helicase twinkle [Replication, recombination and repair] Back     alignment and domain information
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK06893 DNA replication initiation factor; Validated Back     alignment and domain information
>PTZ00112 origin recognition complex 1 protein; Provisional Back     alignment and domain information
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK06921 hypothetical protein; Provisional Back     alignment and domain information
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs Back     alignment and domain information
>cd01120 RecA-like_NTPases RecA-like NTPases Back     alignment and domain information
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A Back     alignment and domain information
>PRK09111 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>TIGR02928 orc1/cdc6 family replication initiation protein Back     alignment and domain information
>PRK05642 DNA replication initiation factor; Validated Back     alignment and domain information
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed Back     alignment and domain information
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional Back     alignment and domain information
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional Back     alignment and domain information
>PHA02533 17 large terminase protein; Provisional Back     alignment and domain information
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair] Back     alignment and domain information
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI Back     alignment and domain information
>PRK08533 flagellar accessory protein FlaH; Reviewed Back     alignment and domain information
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] Back     alignment and domain information
>PRK07471 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>KOG3732 consensus Staufen and related double-stranded-RNA-binding proteins [Intracellular trafficking, secretion, and vesicular transport; Transcription] Back     alignment and domain information
>PHA02544 44 clamp loader, small subunit; Provisional Back     alignment and domain information
>KOG2777 consensus tRNA-specific adenosine deaminase 1 [RNA processing and modification] Back     alignment and domain information
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP Back     alignment and domain information
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins Back     alignment and domain information
>PHA03368 DNA packaging terminase subunit 1; Provisional Back     alignment and domain information
>PHA02244 ATPase-like protein Back     alignment and domain information
>PRK08939 primosomal protein DnaI; Reviewed Back     alignment and domain information
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase) Back     alignment and domain information
>PRK06645 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>TIGR00362 DnaA chromosomal replication initiator protein DnaA Back     alignment and domain information
>PRK05896 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication Back     alignment and domain information
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK05707 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair] Back     alignment and domain information
>TIGR02881 spore_V_K stage V sporulation protein K Back     alignment and domain information
>PRK14087 dnaA chromosomal replication initiation protein; Provisional Back     alignment and domain information
>PRK07940 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport Back     alignment and domain information
>PRK08084 DNA replication initiation factor; Provisional Back     alignment and domain information
>COG3587 Restriction endonuclease [Defense mechanisms] Back     alignment and domain information
>PRK00440 rfc replication factor C small subunit; Reviewed Back     alignment and domain information
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK08451 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK13833 conjugal transfer protein TrbB; Provisional Back     alignment and domain information
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] Back     alignment and domain information
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>PLN03025 replication factor C subunit; Provisional Back     alignment and domain information
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB Back     alignment and domain information
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family Back     alignment and domain information
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK06067 flagellar accessory protein FlaH; Validated Back     alignment and domain information
>PRK14088 dnaA chromosomal replication initiation protein; Provisional Back     alignment and domain information
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK07133 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases Back     alignment and domain information
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only] Back     alignment and domain information
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals [] Back     alignment and domain information
>PRK05563 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family Back     alignment and domain information
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism] Back     alignment and domain information
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family Back     alignment and domain information
>PRK06620 hypothetical protein; Validated Back     alignment and domain information
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau Back     alignment and domain information
>PRK12422 chromosomal replication initiation protein; Provisional Back     alignment and domain information
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair] Back     alignment and domain information
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX Back     alignment and domain information
>PRK09087 hypothetical protein; Validated Back     alignment and domain information
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair Back     alignment and domain information
>PRK04195 replication factor C large subunit; Provisional Back     alignment and domain information
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] Back     alignment and domain information
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases Back     alignment and domain information
>PTZ00293 thymidine kinase; Provisional Back     alignment and domain information
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ] Back     alignment and domain information
>PRK13894 conjugal transfer ATPase TrbB; Provisional Back     alignment and domain information
>COG4626 Phage terminase-like protein, large subunit [General function prediction only] Back     alignment and domain information
>PRK13851 type IV secretion system protein VirB11; Provisional Back     alignment and domain information
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK11054 helD DNA helicase IV; Provisional Back     alignment and domain information
>CHL00181 cbbX CbbX; Provisional Back     alignment and domain information
>TIGR02655 circ_KaiC circadian clock protein KaiC Back     alignment and domain information
>PRK04841 transcriptional regulator MalT; Provisional Back     alignment and domain information
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only] Back     alignment and domain information
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair] Back     alignment and domain information
>PRK10919 ATP-dependent DNA helicase Rep; Provisional Back     alignment and domain information
>PRK14086 dnaA chromosomal replication initiation protein; Provisional Back     alignment and domain information
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK10865 protein disaggregation chaperone; Provisional Back     alignment and domain information
>KOG3732 consensus Staufen and related double-stranded-RNA-binding proteins [Intracellular trafficking, secretion, and vesicular transport; Transcription] Back     alignment and domain information
>PRK08058 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK06647 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional Back     alignment and domain information
>PRK07399 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK06964 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK08769 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>TIGR01075 uvrD DNA helicase II Back     alignment and domain information
>PF13555 AAA_29: P-loop containing region of AAA domain Back     alignment and domain information
>PRK13900 type IV secretion system ATPase VirB11; Provisional Back     alignment and domain information
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical Back     alignment and domain information
>PRK06871 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI Back     alignment and domain information
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF Back     alignment and domain information
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair] Back     alignment and domain information
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases Back     alignment and domain information
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB Back     alignment and domain information
>PRK13342 recombination factor protein RarA; Reviewed Back     alignment and domain information
>PRK11823 DNA repair protein RadA; Provisional Back     alignment and domain information
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase Back     alignment and domain information
>PF03368 Dicer_dimer: Dicer dimerisation domain; InterPro: IPR005034 This domain is found in members of the Dicer protein family of dsRNA nucleases Back     alignment and domain information
>PRK11773 uvrD DNA-dependent helicase II; Provisional Back     alignment and domain information
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency [] Back     alignment and domain information
>TIGR01074 rep ATP-dependent DNA helicase Rep Back     alignment and domain information
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional Back     alignment and domain information
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor Back     alignment and domain information
>PHA00729 NTP-binding motif containing protein Back     alignment and domain information
>TIGR00767 rho transcription termination factor Rho Back     alignment and domain information
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family Back     alignment and domain information
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response Back     alignment and domain information
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] Back     alignment and domain information
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK05564 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK12900 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>cd01121 Sms Sms (bacterial radA) DNA repair protein Back     alignment and domain information
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] Back     alignment and domain information
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H Back     alignment and domain information
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] Back     alignment and domain information
>TIGR02688 conserved hypothetical protein TIGR02688 Back     alignment and domain information
>PRK04328 hypothetical protein; Provisional Back     alignment and domain information
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed Back     alignment and domain information
>PRK05973 replicative DNA helicase; Provisional Back     alignment and domain information
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] Back     alignment and domain information
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB Back     alignment and domain information
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP) Back     alignment and domain information
>PRK06090 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging [] Back     alignment and domain information
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] Back     alignment and domain information
>PHA00149 DNA encapsidation protein Back     alignment and domain information
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed Back     alignment and domain information
>cd01131 PilT Pilus retraction ATPase PilT Back     alignment and domain information
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A Back     alignment and domain information
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair] Back     alignment and domain information
>PRK12901 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ Back     alignment and domain information
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA Back     alignment and domain information
>PRK06305 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF05894 Podovirus_Gp16: Podovirus DNA encapsidation protein (Gp16); InterPro: IPR008784 This family consists of several DNA encapsidation protein (Gp16) sequences from the phi-29-like viruses Back     alignment and domain information
>TIGR00602 rad24 checkpoint protein rad24 Back     alignment and domain information
>PRK13695 putative NTPase; Provisional Back     alignment and domain information
>PRK10436 hypothetical protein; Provisional Back     alignment and domain information
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU) Back     alignment and domain information
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription] Back     alignment and domain information
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response Back     alignment and domain information
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA Back     alignment and domain information
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type Back     alignment and domain information
>PF12846 AAA_10: AAA-like domain Back     alignment and domain information
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2 Back     alignment and domain information
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family Back     alignment and domain information
>TIGR02655 circ_KaiC circadian clock protein KaiC Back     alignment and domain information
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis Back     alignment and domain information
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA Back     alignment and domain information
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules Back     alignment and domain information
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11 Back     alignment and domain information
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK09376 rho transcription termination factor Rho; Provisional Back     alignment and domain information
>TIGR01817 nifA Nif-specific regulatory protein Back     alignment and domain information
>PRK13764 ATPase; Provisional Back     alignment and domain information
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair] Back     alignment and domain information
>TIGR03689 pup_AAA proteasome ATPase Back     alignment and domain information
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth Back     alignment and domain information
>CHL00095 clpC Clp protease ATP binding subunit Back     alignment and domain information
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB Back     alignment and domain information
>TIGR01420 pilT_fam pilus retraction protein PilT Back     alignment and domain information
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP Back     alignment and domain information
>COG1110 Reverse gyrase [DNA replication, recombination, and repair] Back     alignment and domain information
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B Back     alignment and domain information
>cd00984 DnaB_C DnaB helicase C terminal domain Back     alignment and domain information
>TIGR00763 lon ATP-dependent protease La Back     alignment and domain information
>TIGR03263 guanyl_kin guanylate kinase Back     alignment and domain information
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C Back     alignment and domain information
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK08760 replicative DNA helicase; Provisional Back     alignment and domain information
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional Back     alignment and domain information
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family Back     alignment and domain information
>TIGR02237 recomb_radB DNA repair and recombination protein RadB Back     alignment and domain information
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A Back     alignment and domain information
>TIGR02533 type_II_gspE general secretory pathway protein E Back     alignment and domain information
>PRK07993 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C Back     alignment and domain information
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit Back     alignment and domain information
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription] Back     alignment and domain information
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR00750 lao LAO/AO transport system ATPase Back     alignment and domain information
>CHL00176 ftsH cell division protein; Validated Back     alignment and domain information
>PRK05917 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA Back     alignment and domain information
>PRK00300 gmk guanylate kinase; Provisional Back     alignment and domain information
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH) Back     alignment and domain information
>cd01394 radB RadB Back     alignment and domain information
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies Back     alignment and domain information
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export Back     alignment and domain information
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ] Back     alignment and domain information
>PRK10787 DNA-binding ATP-dependent protease La; Provisional Back     alignment and domain information
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] Back     alignment and domain information
>COG1074 RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG1817 consensus Ribonuclease [RNA processing and modification] Back     alignment and domain information
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair] Back     alignment and domain information
>PRK08233 hypothetical protein; Provisional Back     alignment and domain information
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids [] Back     alignment and domain information
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit Back     alignment and domain information
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query901
3llm_A235 Crystal Structure Analysis Of A Rna Helicase Length 4e-51
3kx2_B767 Crystal Structure Of Prp43p In Complex With Adp Len 1e-46
3kx2_B767 Crystal Structure Of Prp43p In Complex With Adp Len 1e-42
2xau_A773 Crystal Structure Of The Prp43p Deah-Box Rna Helica 1e-46
2xau_A773 Crystal Structure Of The Prp43p Deah-Box Rna Helica 1e-42
3i4u_A270 Crystal Structure Analysis Of A Helicase Associated 6e-24
>pdb|3LLM|A Chain A, Crystal Structure Analysis Of A Rna Helicase Length = 235 Back     alignment and structure 
Iteration: 1

 Score =  200 bits (508), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 100/185 (54%), Positives = 133/185 (71%), Gaps = 3/185 (1%)
Query: 1   MLEFRRNLPAYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSI 60
           +L+ R  LP  K ++ +L AISQN VVII G TGCGKTTQVPQFIL+  I + R A C+I
Sbjct: 53  ILQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNI 112
Query: 61  ICTQPRRISAMSVSERVASERGEKLGESVGYKVRLEGMKGR-DTRLLFCTTGILLRRLLV 119
           + TQPRRISA+SV+ERVA ERGE+ G+S GY VR E +  R    + FCT G+LLR+L  
Sbjct: 113 VVTQPRRISAVSVAERVAFERGEEPGKSCGYSVRFESILPRPHASIXFCTVGVLLRKL-- 170
Query: 120 DRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRPELRLVLMSATLDAELFSSYFGGA 179
           +  ++G++HVIVDE+HER +N DFLL+VL+D++   PE+R+VL SAT+D   F  YF   
Sbjct: 171 EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLXSATIDTSXFCEYFFNC 230
Query: 180 TVINI 184
            +I +
Sbjct: 231 PIIEV 235
>pdb|3KX2|B Chain B, Crystal Structure Of Prp43p In Complex With Adp Length = 767 Back     alignment and structure
>pdb|3KX2|B Chain B, Crystal Structure Of Prp43p In Complex With Adp Length = 767 Back     alignment and structure
>pdb|2XAU|A Chain A, Crystal Structure Of The Prp43p Deah-Box Rna Helicase In Complex With Adp Length = 773 Back     alignment and structure
>pdb|2XAU|A Chain A, Crystal Structure Of The Prp43p Deah-Box Rna Helicase In Complex With Adp Length = 773 Back     alignment and structure
>pdb|3I4U|A Chain A, Crystal Structure Analysis Of A Helicase Associated Domain Length = 270 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query901
2xau_A773 PRE-mRNA-splicing factor ATP-dependent RNA helica; 0.0
3llm_A235 ATP-dependent RNA helicase A; alpha-beta-alpha, st 1e-111
3i4u_A270 ATP-dependent RNA helicase DHX8; splicing, ATP-bin 1e-40
2v6i_A431 RNA helicase; membrane, hydrolase, transmembrane, 1e-34
2v6i_A431 RNA helicase; membrane, hydrolase, transmembrane, 1e-31
2z83_A459 Helicase/nucleoside triphosphatase; hydrolase, mem 2e-33
2z83_A459 Helicase/nucleoside triphosphatase; hydrolase, mem 1e-29
2jlq_A451 Serine protease subunit NS3; ribonucleoprotein, nu 6e-33
2jlq_A451 Serine protease subunit NS3; ribonucleoprotein, nu 3e-31
3o8b_A666 HCV NS3 protease/helicase; ntpase, RNA, translocat 3e-32
3o8b_A666 HCV NS3 protease/helicase; ntpase, RNA, translocat 7e-30
1yks_A440 Genome polyprotein [contains: flavivirin protease 5e-31
1yks_A440 Genome polyprotein [contains: flavivirin protease 5e-27
2whx_A618 Serine protease/ntpase/helicase NS3; transcription 2e-30
2whx_A618 Serine protease/ntpase/helicase NS3; transcription 8e-30
2wv9_A673 Flavivirin protease NS2B regulatory subunit, FLAV 1e-28
2wv9_A673 Flavivirin protease NS2B regulatory subunit, FLAV 6e-27
3adj_A76 F21M12.9 protein; HYL1, miRNA processing, RNA bind 2e-16
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-14
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-14
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-04
1whn_A128 Hypothetical protein riken cDNA 2310016K04; double 6e-10
3adg_A73 F21M12.9 protein; HYL1, miRNA processing mechanism 1e-09
1x47_A98 DGCR8 protein; structural genomics, DSRM domain, N 4e-08
2yt4_A 232 Protein DGCR8; DSRBD, RNA binding domain, RNA bind 2e-07
2l2n_A103 Hyponastic leave 1; DSRBD, miRNA, RNA binding prot 3e-07
2zj8_A720 DNA helicase, putative SKI2-type helicase; RECA fo 9e-07
1whq_A99 RNA helicase A; double-stranded RNA binding domain 2e-06
3llh_A90 RISC-loading complex subunit tarbp2; DSRBD, DSRM, 3e-06
1uhz_A89 Staufen (RNA binding protein) homolog 2; DSRM, sta 3e-06
1qu6_A179 Protein kinase PKR; dsRNA-binding domain, solution 5e-06
1qu6_A179 Protein kinase PKR; dsRNA-binding domain, solution 4e-04
3adl_A88 RISC-loading complex subunit tarbp2; TRBP2, miRNA 7e-06
2va8_A715 SSO2462, SKI2-type helicase; hydrolase, DNA repair 2e-05
2p6r_A702 Afuhel308 helicase; protein-DNA complex, SF2 helic 2e-05
1wp9_A494 ATP-dependent RNA helicase, putative; ATPase, DNA 3e-05
2b7v_A71 Double-stranded RNA-specific editase 1; RNA editin 4e-05
2cpn_A89 TAR RNA-binding protein 2; double-stranded RNA bin 1e-04
2dix_A84 Interferon-inducible double stranded RNA- dependen 1e-04
1o0w_A252 Ribonuclease III, RNAse III; TM1102, structural ge 1e-04
2khx_A85 Ribonuclease 3; drosha, RNA binding domain, hydrol 2e-04
2nug_A221 Ribonuclease III, RNAse III; dsRNA, RNA interferen 2e-04
1x49_A97 Interferon-induced, double-stranded RNA- activated 2e-04
1di2_A69 XLRBPA, double stranded RNA binding protein A; pro 2e-04
3n3w_A248 Ribonuclease III; nuclease domain, ribonuclase III 3e-04
2ljh_A114 Double-stranded RNA-specific editase ADAR; DSRBD, 3e-04
3rv0_A341 K. polysporus DCR1; RNAse III enzyme, RNA binding 5e-04
2a11_A242 Ribonuclease III, RNAse III; nuclease domain, stru 7e-04
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* Length = 773 Back     alignment and structure
 Score =  546 bits (1408), Expect = 0.0
 Identities = 215/693 (31%), Positives = 337/693 (48%), Gaps = 94/693 (13%)

Query: 1   MLEFRRNLPAYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSI 60
           +L+ RR LP + +++  L     NQ+++  GETG GKTTQ+PQF+L  E+  +      +
Sbjct: 86  ILKIRRELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQ--V 143

Query: 61  ICTQPRRISAMSVSERVASERGEKLGESVGYKVRLEGMKGRDTRLLFCTTGILLRRLLVD 120
            CTQPRR++AMSV++RVA E   KLGE VGY +R E      T L + T G+LLR  + D
Sbjct: 144 ACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFENKTSNKTILKYMTDGMLLREAMED 203

Query: 121 RNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRPELRLVLMSATLDAELFSSYFGGAT 180
            +L   + +I+DE HER +  D L+ +LK ++ RRP+L++++MSATLDAE F  YF  A 
Sbjct: 204 HDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRYFNDAP 263

Query: 181 VINIPGFTYPVRTHFLEDILDMTGYRLTPYNQIDDYGQEKMWKMSKQAPRKRKSQIASAV 240
           ++ +PG TYPV  +          Y         DY                   + SA+
Sbjct: 264 LLAVPGRTYPVELY----------YTPEF---QRDY-------------------LDSAI 291

Query: 241 EDTLKAANFNEYSSQTRESLSCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTGWDDIN 300
              L+                                  I   E  G +L+F+TG D+I 
Sbjct: 292 RTVLQ----------------------------------IHATEEAGDILLFLTGEDEIE 317

Query: 301 S----LNDKLQANRILGDPTRVLLLTCHGSMASSEQRLIFDEPESGV-----RKIVLATN 351
                ++ +            + +   +GS+   +Q+ IF+           RK+V++TN
Sbjct: 318 DAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTN 377

Query: 352 IAETSITINDVVFVIDCGKAKETSYDALNNTSCLLPSWISTVSAQQRRGRAGRVQPGECY 411
           IAETS+TI+ +V+V+D G +K+  Y+       LL S IS  SAQQR GRAGR +PG+C+
Sbjct: 378 IAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCF 437

Query: 412 RLYPRCVYDA-FAEYQLPEILRTPLQSLCLQIKSLRLGTIAGF--LSRALQSPELLAVQN 468
           RLY    +     E   PEILR+ L S  L++K L +  +  F  +      P    +  
Sbjct: 438 RLYTEEAFQKELIEQSYPEILRSNLSSTVLELKKLGIDDLVHFDFMDP----PAPETMMR 493

Query: 469 AIEYLKIIGALDHNEELTVLGQYLAMLPMEPKLGKMLILGAIFNCLEPVLTIVAGLSVRD 528
           A+E L  +  LD    LT LG+  +  P++P L  MLI    F C + +LTIVA LSV +
Sbjct: 494 ALEELNYLACLDDEGNLTPLGRLASQFPLDPMLAVMLIGSFEFQCSQEILTIVAMLSVPN 553

Query: 529 PFLAPMDKKDLAEAAKSQFSHDYSDHLALVRAFEGWKDAER-GLAGYEYCWKNFLSAPSM 587
            F+ P   K  A+ AK+ F+H   DH+ L+  +  +K  E      +++C  ++L+  S+
Sbjct: 554 VFIRPTKDKKRADDAKNIFAHPDGDHITLLNVYHAFKSDEAYEYGIHKWCRDHYLNYRSL 613

Query: 588 KVIDSLRKEFLSLLKDTGLVDCDTSICNAWGRDERFIRAVICYGLYPGISSIVQNGKSSS 647
              D++R +   L+    L     +      +    IR  +  G +  ++      K   
Sbjct: 614 SAADNIRSQLERLMNRYNLE--LNTTDYESPKYFDNIRKALASGFFMQVAKKRSGAK--G 669

Query: 648 LKTMEDGQ-VFLYSNSVNARESEIPYPWLVFNE 679
             T++D Q V ++ ++V          W+++NE
Sbjct: 670 YITVKDNQDVLIHPSTVLGH----DAEWVIYNE 698
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} Length = 235 Back     alignment and structure
>3i4u_A ATP-dependent RNA helicase DHX8; splicing, ATP-binding, hydrolase, mRNA processing, splicing, nucleotide-binding, nucleus, phosphoprotein, SPLI; 2.10A {Homo sapiens} Length = 270 Back     alignment and structure
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A Length = 431 Back     alignment and structure
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A Length = 431 Back     alignment and structure
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A Length = 459 Back     alignment and structure
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A Length = 459 Back     alignment and structure
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A Length = 451 Back     alignment and structure
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A Length = 451 Back     alignment and structure
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4a92_A* 1cu1_A 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A 8ohm_A 2f55_A 1jr6_A 1onb_A Length = 666 Back     alignment and structure
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4a92_A* 1cu1_A 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A 8ohm_A 2f55_A 1jr6_A 1onb_A Length = 666 Back     alignment and structure
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* Length = 440 Back     alignment and structure
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* Length = 440 Back     alignment and structure
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A Length = 618 Back     alignment and structure
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A Length = 618 Back     alignment and structure
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus} Length = 673 Back     alignment and structure
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus} Length = 673 Back     alignment and structure
>3adj_A F21M12.9 protein; HYL1, miRNA processing, RNA binding protein, gene regulation; 3.00A {Arabidopsis thaliana} PDB: 2l2m_A Length = 76 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1whn_A Hypothetical protein riken cDNA 2310016K04; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1 Length = 128 Back     alignment and structure
>3adg_A F21M12.9 protein; HYL1, miRNA processing mechanism, RNA binding protein, gene regulation; 1.70A {Arabidopsis thaliana} PDB: 3adi_A Length = 73 Back     alignment and structure
>1x47_A DGCR8 protein; structural genomics, DSRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1 Length = 98 Back     alignment and structure
>2yt4_A Protein DGCR8; DSRBD, RNA binding domain, RNA binding protein; 2.60A {Homo sapiens} Length = 232 Back     alignment and structure
>2l2n_A Hyponastic leave 1; DSRBD, miRNA, RNA binding protein, plant protein; NMR {Arabidopsis thaliana} Length = 103 Back     alignment and structure
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* Length = 720 Back     alignment and structure
>1whq_A RNA helicase A; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs6_A Length = 99 Back     alignment and structure
>3llh_A RISC-loading complex subunit tarbp2; DSRBD, DSRM, microrna, RNA binding protein; 2.14A {Homo sapiens} Length = 90 Back     alignment and structure
>1uhz_A Staufen (RNA binding protein) homolog 2; DSRM, staufen homolog 2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1 Length = 89 Back     alignment and structure
>1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1 Length = 179 Back     alignment and structure
>1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1 Length = 179 Back     alignment and structure
>3adl_A RISC-loading complex subunit tarbp2; TRBP2, miRNA processing, gene regulation-RNA complex; 2.20A {Homo sapiens} Length = 88 Back     alignment and structure
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} Length = 715 Back     alignment and structure
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A Length = 702 Back     alignment and structure
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 Length = 494 Back     alignment and structure
>2b7v_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l2k_B Length = 71 Back     alignment and structure
>2cpn_A TAR RNA-binding protein 2; double-stranded RNA binding domain, DSRBD, DSRM., structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.50.1.1 Length = 89 Back     alignment and structure
>2dix_A Interferon-inducible double stranded RNA- dependent protein kinase activator A; structure genomics, DSRM domain, hypothetical protein PRKRA; NMR {Homo sapiens} SCOP: d.50.1.1 Length = 84 Back     alignment and structure
>1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1 Length = 252 Back     alignment and structure
>2khx_A Ribonuclease 3; drosha, RNA binding domain, hydrolase, gene regulation, NUCL protein, gene regulation,nuclear protein; NMR {Homo sapiens} Length = 85 Back     alignment and structure
>2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A Length = 221 Back     alignment and structure
>1x49_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1 Length = 97 Back     alignment and structure
>1di2_A XLRBPA, double stranded RNA binding protein A; protein-RNA complex, protein-RNA interactions, RNA-bining protein; 1.90A {Xenopus laevis} SCOP: d.50.1.1 Length = 69 Back     alignment and structure
>3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862, csgid, structura genomics; 2.21A {Campylobacter jejuni subsp} Length = 248 Back     alignment and structure
>2ljh_A Double-stranded RNA-specific editase ADAR; DSRBD, DSRBM, editing, hydrolase; NMR {Drosophila melanogaster} Length = 114 Back     alignment and structure
>3rv0_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 2.29A {Vanderwaltozyma polyspora} Length = 341 Back     alignment and structure
>2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomic protein structure initiative; 2.10A {Mycobacterium tuberculosis} Length = 242 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query901
2xau_A773 PRE-mRNA-splicing factor ATP-dependent RNA helica; 100.0
2va8_A715 SSO2462, SKI2-type helicase; hydrolase, DNA repair 100.0
2p6r_A702 Afuhel308 helicase; protein-DNA complex, SF2 helic 100.0
2zj8_A720 DNA helicase, putative SKI2-type helicase; RECA fo 100.0
3i4u_A270 ATP-dependent RNA helicase DHX8; splicing, ATP-bin 100.0
2z83_A459 Helicase/nucleoside triphosphatase; hydrolase, mem 100.0
3l9o_A1108 ATP-dependent RNA helicase DOB1; REC-A fold, winge 100.0
3o8b_A666 HCV NS3 protease/helicase; ntpase, RNA, translocat 100.0
2jlq_A451 Serine protease subunit NS3; ribonucleoprotein, nu 100.0
3eiq_A414 Eukaryotic initiation factor 4A-I; PDCD4, anti-onc 100.0
3pey_A395 ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, A 100.0
3fht_A412 ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box 100.0
4f92_B1724 U5 small nuclear ribonucleoprotein 200 kDa helica; 100.0
4f92_B 1724 U5 small nuclear ribonucleoprotein 200 kDa helica; 100.0
2db3_A434 ATP-dependent RNA helicase VASA; DEAD-BOX, protein 100.0
2ykg_A696 Probable ATP-dependent RNA helicase DDX58; hydrola 100.0
4a4z_A997 Antiviral helicase SKI2; hydrolase, ATPase, mRNA d 100.0
1s2m_A400 Putative ATP-dependent RNA helicase DHH1; ATP-bind 100.0
2i4i_A417 ATP-dependent RNA helicase DDX3X; DEAD, structural 100.0
2whx_A618 Serine protease/ntpase/helicase NS3; transcription 100.0
2xgj_A1010 ATP-dependent RNA helicase DOB1; hydrolase-RNA com 100.0
3fmp_B479 ATP-dependent RNA helicase DDX19B; nuclear porin, 100.0
2j0s_A410 ATP-dependent RNA helicase DDX48; mRNA processing, 100.0
1hv8_A367 Putative ATP-dependent RNA helicase MJ0669; RNA-bi 100.0
1xti_A391 Probable ATP-dependent RNA helicase P47; alpha-bet 100.0
3rc3_A677 ATP-dependent RNA helicase SUPV3L1, mitochondrial; 100.0
3fho_A508 ATP-dependent RNA helicase DBP5; mRNA export, ATPa 100.0
4a2p_A556 RIG-I, retinoic acid inducible protein I; hydrolas 100.0
3tbk_A555 RIG-I helicase domain; DECH helicase, ATP binding, 100.0
3i5x_A563 ATP-dependent RNA helicase MSS116; protein-RNA com 100.0
1fuu_A394 Yeast initiation factor 4A; IF4A, helicase, DEAD-b 100.0
2z0m_A337 337AA long hypothetical ATP-dependent RNA helicase 100.0
2v6i_A431 RNA helicase; membrane, hydrolase, transmembrane, 100.0
2v1x_A591 ATP-dependent DNA helicase Q1; DNA strand annealin 100.0
3sqw_A579 ATP-dependent RNA helicase MSS116, mitochondrial; 100.0
1yks_A440 Genome polyprotein [contains: flavivirin protease 100.0
4gl2_A699 Interferon-induced helicase C domain-containing P; 100.0
2wv9_A673 Flavivirin protease NS2B regulatory subunit, FLAV 100.0
1wp9_A494 ATP-dependent RNA helicase, putative; ATPase, DNA 100.0
1oyw_A523 RECQ helicase, ATP-dependent DNA helicase; winged 99.98
4a2q_A797 RIG-I, retinoic acid inducible protein I; hydrolas 99.98
3oiy_A414 Reverse gyrase helicase domain; topoisomerase, DNA 99.97
4a2w_A936 RIG-I, retinoic acid inducible protein I; hydrolas 99.97
3llm_A235 ATP-dependent RNA helicase A; alpha-beta-alpha, st 99.96
1gm5_A780 RECG; helicase, replication restart; HET: DNA ADP; 99.96
2fwr_A472 DNA repair protein RAD25; DNA unwinding, XPB, DNA 99.96
2eyq_A1151 TRCF, transcription-repair coupling factor; MFD, S 99.96
4ddu_A 1104 Reverse gyrase; topoisomerase, DNA supercoiling, a 99.95
2oca_A510 DAR protein, ATP-dependent DNA helicase UVSW; ATP- 99.95
1gku_B 1054 Reverse gyrase, TOP-RG; topoisomerase, DNA superco 99.94
3h1t_A590 Type I site-specific restriction-modification syst 99.94
1tf5_A844 Preprotein translocase SECA subunit; ATPase, helic 99.92
2fsf_A853 Preprotein translocase SECA subunit; ATPase, DNA-R 99.91
1nkt_A922 Preprotein translocase SECA 1 subunit; preprotein 99.89
3dmq_A968 RNA polymerase-associated protein RAPA; SWF2/SNF2, 99.89
3eaq_A212 Heat resistant RNA dependent ATPase; DEAD box RNA 99.88
2w00_A1038 HSDR, R.ECOR124I; ATP-binding, DNA-binding, restri 99.86
1z63_A500 Helicase of the SNF2/RAD54 hamily; protein-DNA com 99.86
3i32_A300 Heat resistant RNA dependent ATPase; RNA helicase, 99.86
3mwy_W800 Chromo domain-containing protein 1; SWI2/SNF2 ATPa 99.8
1z3i_X644 Similar to RAD54-like; recombination ATPase helica 99.79
1qde_A224 EIF4A, translation initiation factor 4A; DEAD box 99.79
3ber_A249 Probable ATP-dependent RNA helicase DDX47; DEAD, A 99.78
1vec_A206 ATP-dependent RNA helicase P54; DEAD-box protein, 99.78
3iuy_A228 Probable ATP-dependent RNA helicase DDX53; REC-A-l 99.78
1q0u_A219 Bstdead; DEAD protein, RNA binding protein; 1.85A 99.77
2pl3_A236 Probable ATP-dependent RNA helicase DDX10; DEAD, s 99.77
2oxc_A230 Probable ATP-dependent RNA helicase DDX20; DEAD, s 99.77
3bor_A237 Human initiation factor 4A-II; translation initiat 99.77
3dkp_A245 Probable ATP-dependent RNA helicase DDX52; DEAD, A 99.77
3jux_A822 Protein translocase subunit SECA; protein transloc 99.77
2gxq_A207 Heat resistant RNA dependent ATPase; RNA helicase, 99.77
3fmo_B300 ATP-dependent RNA helicase DDX19B; nuclear porin, 99.76
1c4o_A664 DNA nucleotide excision repair enzyme UVRB; uvrabc 99.75
1t6n_A220 Probable ATP-dependent RNA helicase; RECA-like fol 99.75
3fe2_A242 Probable ATP-dependent RNA helicase DDX5; DEAD, AD 99.75
1wrb_A253 DJVLGB; RNA helicase, DEAD BOX, VASA, structural g 99.74
3ly5_A262 ATP-dependent RNA helicase DDX18; alpha-beta, stru 99.74
2hjv_A163 ATP-dependent RNA helicase DBPA; parallel alpha-be 99.7
1fuk_A165 Eukaryotic initiation factor 4A; helicase, DEAD-bo 99.7
2rb4_A175 ATP-dependent RNA helicase DDX25; rossmann fold, s 99.69
3b6e_A216 Interferon-induced helicase C domain-containing P; 99.69
1t5i_A172 C_terminal domain of A probable ATP-dependent RNA 99.67
2jgn_A185 DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosp 99.65
2d7d_A661 Uvrabc system protein B; helicase, protein-DNA-ADP 99.64
2p6n_A191 ATP-dependent RNA helicase DDX41; DEAD, structural 99.62
2yjt_D170 ATP-dependent RNA helicase SRMB, regulator of ribo 99.4
1rif_A282 DAR protein, DNA helicase UVSW; bacteriophage, REC 99.55
2vl7_A540 XPD; helicase, unknown function; 2.25A {Sulfolobus 99.53
2ipc_A997 Preprotein translocase SECA subunit; nucleotide bi 99.52
2fz4_A237 DNA repair protein RAD25; RECA-like domain, DNA da 99.47
3crv_A551 XPD/RAD3 related DNA helicase; XPD helicase DNA re 99.27
3adg_A73 F21M12.9 protein; HYL1, miRNA processing mechanism 99.19
1z5z_A271 Helicase of the SNF2/RAD54 family; hydrolase, reco 99.15
2cpn_A89 TAR RNA-binding protein 2; double-stranded RNA bin 99.1
1uhz_A89 Staufen (RNA binding protein) homolog 2; DSRM, sta 99.07
3adl_A88 RISC-loading complex subunit tarbp2; TRBP2, miRNA 99.04
3adj_A76 F21M12.9 protein; HYL1, miRNA processing, RNA bind 99.03
1ekz_A76 DSRBDIII, maternal effect protein (staufen); struc 99.01
2l2n_A103 Hyponastic leave 1; DSRBD, miRNA, RNA binding prot 98.99
1whn_A128 Hypothetical protein riken cDNA 2310016K04; double 98.98
1whq_A99 RNA helicase A; double-stranded RNA binding domain 98.98
2b7t_A73 Double-stranded RNA-specific editase 1; RNA editin 98.98
2dix_A84 Interferon-inducible double stranded RNA- dependen 98.97
3llh_A90 RISC-loading complex subunit tarbp2; DSRBD, DSRM, 98.92
1di2_A69 XLRBPA, double stranded RNA binding protein A; pro 98.91
2b7v_A71 Double-stranded RNA-specific editase 1; RNA editin 98.89
1x47_A98 DGCR8 protein; structural genomics, DSRM domain, N 98.88
2dmy_A97 Spermatid perinuclear RNA-binding protein; DSRM do 98.8
1x49_A97 Interferon-induced, double-stranded RNA- activated 98.76
2khx_A85 Ribonuclease 3; drosha, RNA binding domain, hydrol 98.75
2l33_A91 Interleukin enhancer-binding factor 3; structural 98.72
1uil_A113 Double-stranded RNA-binding motif; structural geno 98.71
1x48_A88 Interferon-induced, double-stranded RNA- activated 98.71
2ljh_A114 Double-stranded RNA-specific editase ADAR; DSRBD, 98.56
3p1x_A75 Interleukin enhancer-binding factor 3; structural 98.46
1t4n_A94 Ribonuclease III; DSRBD, RNA-binding, hydrolase; N 98.41
1qu6_A179 Protein kinase PKR; dsRNA-binding domain, solution 98.37
1qu6_A179 Protein kinase PKR; dsRNA-binding domain, solution 98.35
1t4o_A117 Ribonuclease III; RNT1P, DSRBD, RNA-binding, hydro 98.34
2yt4_A 232 Protein DGCR8; DSRBD, RNA binding domain, RNA bind 98.22
2nug_A221 Ribonuclease III, RNAse III; dsRNA, RNA interferen 98.13
1o0w_A252 Ribonuclease III, RNAse III; TM1102, structural ge 98.12
2yt4_A232 Protein DGCR8; DSRBD, RNA binding domain, RNA bind 98.04
2l3j_A236 Double-stranded RNA-specific editase 1; editing, d 98.04
1w36_D608 RECD, exodeoxyribonuclease V alpha chain; recombin 97.99
2a11_A242 Ribonuclease III, RNAse III; nuclease domain, stru 97.93
3n3w_A248 Ribonuclease III; nuclease domain, ribonuclase III 97.86
2l3j_A 236 Double-stranded RNA-specific editase 1; editing, d 97.73
3e1s_A574 Exodeoxyribonuclease V, subunit RECD; alpha and be 97.54
3upu_A459 ATP-dependent DNA helicase DDA; RECA-like domain, 97.54
2b8t_A223 Thymidine kinase; deoxyribonucleoside kinase, zinc 97.31
4a15_A620 XPD helicase, ATP-dependent DNA helicase TA0057; h 97.24
3rv0_A341 K. polysporus DCR1; RNAse III enzyme, RNA binding 97.23
2o0j_A385 Terminase, DNA packaging protein GP17; nucleotide- 97.2
3lfu_A647 DNA helicase II; SF1 helicase, ATP-binding, DNA da 96.98
2orw_A184 Thymidine kinase; TMTK, TP4A, transferase; HET: 4T 96.91
3te6_A318 Regulatory protein SIR3; heterochromatin, gene sil 96.84
3cpe_A592 Terminase, DNA packaging protein GP17; large termi 96.82
1xx6_A191 Thymidine kinase; NESG, northeast structural genom 96.72
3ec2_A180 DNA replication protein DNAC; helicase loader, rep 96.69
3kl4_A433 SRP54, signal recognition 54 kDa protein; signal r 96.65
4b3f_X646 DNA-binding protein smubp-2; hydrolase, helicase; 96.54
2db2_A119 KIAA0890 protein; DSRM domain, structural genomics 96.39
3dm5_A443 SRP54, signal recognition 54 kDa protein; protein- 96.3
2chg_A226 Replication factor C small subunit; DNA-binding pr 96.29
1njg_A250 DNA polymerase III subunit gamma; rossman-like fol 96.27
3c4b_A265 Endoribonuclease dicer; RNAse, dsRNA binding prote 96.11
3n70_A145 Transport activator; sigma-54, ntpase, PSI, MCSG, 96.04
3e2i_A219 Thymidine kinase; Zn-binding, ATP-binding, DNA syn 95.99
2gk6_A624 Regulator of nonsense transcripts 1; UPF1, helicas 95.9
2w58_A202 DNAI, primosome component (helicase loader); ATP-b 95.88
2xzl_A802 ATP-dependent helicase NAM7; hydrolase-RNA complex 95.76
2px0_A296 Flagellar biosynthesis protein FLHF; SRP GTPase, f 95.68
1fnn_A389 CDC6P, cell division control protein 6; ORC1, AAA 95.66
3vkw_A446 Replicase large subunit; alpha/beta domain, helica 95.66
2orv_A234 Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2 95.66
2zpa_A671 Uncharacterized protein YPFI; RNA modification enz 95.63
1a5t_A334 Delta prime, HOLB; zinc finger, DNA replication; 2 95.59
2v1u_A387 Cell division control protein 6 homolog; DNA repli 95.39
2wjy_A800 Regulator of nonsense transcripts 1; nonsense medi 95.38
1vma_A306 Cell division protein FTSY; TM0570, structural gen 95.36
1jr3_A373 DNA polymerase III subunit gamma; processivity, pr 95.28
2j9r_A214 Thymidine kinase; TK1, DNK, lasso, transferase, AT 95.27
2qby_B384 CDC6 homolog 3, cell division control protein 6 ho 95.21
1iqp_A327 RFCS; clamp loader, extended AAA-ATPase domain, co 95.02
3syl_A309 Protein CBBX; photosynthesis, rubisco activase, AA 95.01
2qgz_A308 Helicase loader, putative primosome component; str 94.95
1l8q_A324 Chromosomal replication initiator protein DNAA; AA 94.9
2bjv_A265 PSP operon transcriptional activator; AAA, transcr 94.89
3bos_A242 Putative DNA replication factor; P-loop containing 94.88
2kjq_A149 DNAA-related protein; solution structure, NESG, st 94.81
3u61_B324 DNA polymerase accessory protein 44; AAA+, ATP hyd 94.68
1sxj_A516 Activator 1 95 kDa subunit; clamp loader, processi 94.49
2qby_A386 CDC6 homolog 1, cell division control protein 6 ho 94.39
2qen_A350 Walker-type ATPase; unknown function; HET: ADP; 2. 94.34
1ojl_A304 Transcriptional regulatory protein ZRAR; response 94.26
1d2n_A272 N-ethylmaleimide-sensitive fusion protein; hexamer 94.01
1sxj_B323 Activator 1 37 kDa subunit; clamp loader, processi 93.9
3pfi_A338 Holliday junction ATP-dependent DNA helicase RUVB; 93.89
1sxj_D353 Activator 1 41 kDa subunit; clamp loader, processi 93.82
1ls1_A295 Signal recognition particle protein; FFH, SRP54, S 93.81
1hqc_A324 RUVB; extended AAA-ATPase domain, complex with nuc 93.8
2gno_A305 DNA polymerase III, gamma subunit-related protein; 93.76
1w4r_A195 Thymidine kinase; type II, human, cytosolic, phosp 93.74
4a15_A620 XPD helicase, ATP-dependent DNA helicase TA0057; h 93.68
1sxj_C340 Activator 1 40 kDa subunit; clamp loader, processi 93.25
2w0m_A235 SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus 93.24
3h4m_A285 Proteasome-activating nucleotidase; ATPase, PAN, A 93.07
3vfd_A389 Spastin; ATPase, microtubule severing, hydrolase; 93.07
1w5s_A412 Origin recognition complex subunit 2 ORC2; replica 92.99
1xwi_A322 SKD1 protein; VPS4B, AAA ATPase, protein transport 92.92
2fna_A357 Conserved hypothetical protein; structural genomic 92.68
1sxj_E354 Activator 1 40 kDa subunit; clamp loader, processi 92.57
1uaa_A673 REP helicase, protein (ATP-dependent DNA helicase 92.5
3k1j_A604 LON protease, ATP-dependent protease LON; ATP-bind 92.4
3u4q_A 1232 ATP-dependent helicase/nuclease subunit A; helicas 92.1
2r6a_A454 DNAB helicase, replicative helicase; replication, 92.09
3pvs_A447 Replication-associated recombination protein A; ma 92.06
2z4s_A440 Chromosomal replication initiator protein DNAA; AA 92.06
1pjr_A724 PCRA; DNA repair, DNA replication, SOS response, h 91.84
4fcw_A311 Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 91.46
2ffh_A425 Protein (FFH); SRP54, signal recognition particle, 91.37
3eie_A322 Vacuolar protein sorting-associated protein 4; AAA 91.23
3e70_C328 DPA, signal recognition particle receptor; FTSY, S 91.08
2xxa_A433 Signal recognition particle protein; protein trans 91.06
2qp9_X355 Vacuolar protein sorting-associated protein 4; ATP 90.84
3co5_A143 Putative two-component system transcriptional RES 90.56
3pxi_A758 Negative regulator of genetic competence CLPC/MEC; 90.53
1j8m_F297 SRP54, signal recognition 54 kDa protein; signalin 90.46
1zu4_A320 FTSY; GTPase, signal recognition particle, SRP, re 90.36
3t15_A293 Ribulose bisphosphate carboxylase/oxygenase activ 90.25
4b4t_J405 26S protease regulatory subunit 8 homolog; hydrola 89.93
2kou_A102 Dicer-like protein 4; ATP-binding, endonuclease, h 89.58
2v3c_C432 SRP54, signal recognition 54 kDa protein; nucleoti 89.56
2j37_W504 Signal recognition particle 54 kDa protein (SRP54) 89.28
1g5t_A196 COB(I)alamin adenosyltransferase; P-loop protein, 89.16
3b85_A208 Phosphate starvation-inducible protein; PHOH2, ATP 88.86
4b4t_H467 26S protease regulatory subunit 7 homolog; hydrola 88.84
1kgd_A180 CASK, peripheral plasma membrane CASK; maguk, guan 88.62
3hgt_A328 HDA1 complex subunit 3; RECA-like domain, SWI2/SNF 88.46
2eyu_A261 Twitching motility protein PILT; pilus retraction 87.99
2l8b_A189 Protein TRAI, DNA helicase I; RECD, hydrolase; NMR 87.98
4b4t_M434 26S protease regulatory subunit 6A; hydrolase, AAA 87.91
3tr0_A205 Guanylate kinase, GMP kinase; purines, pyrimidines 87.66
3cmu_A2050 Protein RECA, recombinase A; homologous recombinat 87.44
2dr3_A247 UPF0273 protein PH0284; RECA superfamily ATPase, h 87.39
1jbk_A195 CLPB protein; beta barrel, chaperone; 1.80A {Esche 87.36
2gza_A361 Type IV secretion system protein VIRB11; ATPase, h 87.22
3tau_A208 Guanylate kinase, GMP kinase; structural genomics, 87.17
2oap_1511 GSPE-2, type II secretion system protein; hexameri 87.16
4b4t_K428 26S protease regulatory subunit 6B homolog; hydrol 86.97
2j41_A207 Guanylate kinase; GMP, GMK, transferase, ATP-bindi 86.94
2yhs_A503 FTSY, cell division protein FTSY; cell cycle, prot 86.81
4b4t_I437 26S protease regulatory subunit 4 homolog; hydrola 86.72
1lvg_A198 Guanylate kinase, GMP kinase; transferase; HET: AD 86.55
2zts_A251 Putative uncharacterized protein PH0186; KAIC like 86.5
4b4t_L437 26S protease subunit RPT4; hydrolase, AAA-atpases, 86.42
1znw_A207 Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans 86.24
3vaa_A199 Shikimate kinase, SK; structural genomics, center 86.24
2p65_A187 Hypothetical protein PF08_0063; CLPB, malaria, str 86.19
3ney_A197 55 kDa erythrocyte membrane protein; structural ge 85.8
2pt7_A330 CAG-ALFA; ATPase, protein-protein complex, type IV 85.58
1p9r_A418 General secretion pathway protein E; bacterial typ 85.55
3umf_A217 Adenylate kinase; rossmann fold, transferase; 2.05 85.53
1z6g_A218 Guanylate kinase; structural genomics, SGC, struct 85.49
3lw7_A179 Adenylate kinase related protein (ADKA-like); AMP, 85.47
1xp8_A366 RECA protein, recombinase A; recombination, radior 85.25
4gp7_A171 Metallophosphoesterase; polynucleotide kinase phos 85.22
1zp6_A191 Hypothetical protein ATU3015; alpha-beta protein., 85.16
3a8t_A339 Adenylate isopentenyltransferase; rossmann fold pr 84.76
3exa_A322 TRNA delta(2)-isopentenylpyrophosphate transferase 84.75
3a00_A186 Guanylate kinase, GMP kinase; domain movement, dim 84.74
1qvr_A854 CLPB protein; coiled coil, AAA ATPase, chaperone; 84.73
1kht_A192 Adenylate kinase; phosphotransferase, signaling pr 84.71
3jvv_A356 Twitching mobility protein; hexameric P-loop ATPas 84.65
3bh0_A315 DNAB-like replicative helicase; ATPase, replicatio 84.33
2cvh_A220 DNA repair and recombination protein RADB; filamen 84.28
3trf_A185 Shikimate kinase, SK; amino acid biosynthesis, tra 84.2
2ewv_A372 Twitching motility protein PILT; pilus retraction 83.97
2qor_A204 Guanylate kinase; phosphotransferase, purine metab 83.93
2qmh_A205 HPR kinase/phosphorylase; V267F mutation, ATP-bind 83.91
2c95_A196 Adenylate kinase 1; transferase, AP4A, nucleotide 83.58
1kag_A173 SKI, shikimate kinase I; transferase, structural g 83.41
1qhx_A178 CPT, protein (chloramphenicol phosphotransferase); 83.06
2ehv_A251 Hypothetical protein PH0186; KAIC, RECA ATPase, un 82.58
3cmu_A2050 Protein RECA, recombinase A; homologous recombinat 82.56
3kb2_A173 SPBC2 prophage-derived uncharacterized protein YOR 82.45
3sr0_A206 Adenylate kinase; phosphoryl transfer analogue, AL 82.44
2bwj_A199 Adenylate kinase 5; phosphoryl transfer reaction, 82.39
3cm0_A186 Adenylate kinase; ATP-binding, cytoplasm, nucleoti 82.37
2ze6_A253 Isopentenyl transferase; crown GALL tumor, cytokin 82.35
1zd8_A227 GTP:AMP phosphotransferase mitochondrial; ATP:AMP 82.22
3foz_A316 TRNA delta(2)-isopentenylpyrophosphate transferas; 81.95
3lnc_A231 Guanylate kinase, GMP kinase; ALS collaborative cr 81.8
3iij_A180 Coilin-interacting nuclear ATPase protein; alpha a 81.67
1ly1_A181 Polynucleotide kinase; PNK, phosphatase, transfera 81.56
4eun_A200 Thermoresistant glucokinase; putative sugar kinase 81.35
1knq_A175 Gluconate kinase; ALFA/beta structure, transferase 81.23
1s96_A219 Guanylate kinase, GMP kinase; E.coli, dimer, SAD, 81.22
3tlx_A243 Adenylate kinase 2; structural genomics, structura 81.2
3b9q_A302 Chloroplast SRP receptor homolog, alpha subunit CP 80.94
1zuh_A168 Shikimate kinase; alpha-beta protein, transferase; 80.89
2v54_A204 DTMP kinase, thymidylate kinase; nucleotide biosyn 80.65
4a74_A231 DNA repair and recombination protein RADA; hydrola 80.46
1y63_A184 LMAJ004144AAA protein; structural genomics, protei 80.35
2rhm_A193 Putative kinase; P-loop containing nucleoside trip 80.21
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* Back     alignment and structure
Probab=100.00  E-value=4.4e-101  Score=940.73  Aligned_cols=629  Identities=34%  Similarity=0.572  Sum_probs=556.6

Q ss_pred             hhhhcCCCcHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHh
Q 046397            2 LEFRRNLPAYKEKNRLLTAISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASER   81 (901)
Q Consensus         2 ~~~r~~LPi~~~q~~il~~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~   81 (901)
                      ++.|..+|++.++++|..++..+++++|+|||||||||++|+++++..+..+.  ...|+|++|+|++|.|+++++++++
T Consensus        87 l~~r~~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~~--g~~ilvl~P~r~La~q~~~~l~~~~  164 (773)
T 2xau_A           87 LKIRRELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLE--NTQVACTQPRRVAAMSVAQRVAEEM  164 (773)
T ss_dssp             HHHHTTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHCGGGG--TCEEEEEESCHHHHHHHHHHHHHHT
T ss_pred             HHHhhcCChHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHhccccCC--CceEEecCchHHHHHHHHHHHHHHh
Confidence            46688999999999999999999999999999999999999998876543322  2468889999999999999999999


Q ss_pred             CCccCcEeeEEEecccccCCCceEEEEcHHHHHHHHhcCCCCCCceEEEEecCcccCcchhHHHHHHHHHHhhCCCceEE
Q 046397           82 GEKLGESVGYKVRLEGMKGRDTRLLFCTTGILLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRPELRLV  161 (901)
Q Consensus        82 ~~~~g~~vGy~vr~e~~~~~~t~Ii~~T~g~Llr~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~~~kiI  161 (901)
                      +..++..+||.++++......++|+|+|+|++++.+..++.+.++++|||||+|+|+++.|+++.+++.+...+++.++|
T Consensus       165 ~~~v~~~vG~~i~~~~~~~~~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iI  244 (773)
T 2xau_A          165 DVKLGEEVGYSIRFENKTSNKTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKII  244 (773)
T ss_dssp             TCCBTTTEEEEETTEEECCTTCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEE
T ss_pred             CCchhheecceeccccccCCCCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEE
Confidence            99999999999999888778899999999999999998899999999999999999999999999999999999999999


Q ss_pred             EeccCCCHHHHHhhhCCCcEEeeCCccccceEEeccchhhhcccccCCCCCCcchhhHHHhHhhcccchhhhhhhHHHHH
Q 046397          162 LMSATLDAELFSSYFGGATVINIPGFTYPVRTHFLEDILDMTGYRLTPYNQIDDYGQEKMWKMSKQAPRKRKSQIASAVE  241 (901)
Q Consensus       162 lmSATl~~~~f~~yf~~~~~i~i~gr~~pV~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  241 (901)
                      +||||++.+.+.+||++++++.++|+.+||+.+|.+..             ..++                       ++
T Consensus       245 l~SAT~~~~~l~~~~~~~~vi~v~gr~~pv~~~~~~~~-------------~~~~-----------------------~~  288 (773)
T 2xau_A          245 IMSATLDAEKFQRYFNDAPLLAVPGRTYPVELYYTPEF-------------QRDY-----------------------LD  288 (773)
T ss_dssp             EEESCSCCHHHHHHTTSCCEEECCCCCCCEEEECCSSC-------------CSCH-----------------------HH
T ss_pred             EEeccccHHHHHHHhcCCCcccccCcccceEEEEecCC-------------chhH-----------------------HH
Confidence            99999999999999999999999999999999886531             0000                       00


Q ss_pred             HHHHhhcccccchhhhhhcccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEcCCHHHHHHHHHHHHhCc--c--CCCCCc
Q 046397          242 DTLKAANFNEYSSQTRESLSCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTGWDDINSLNDKLQANR--I--LGDPTR  317 (901)
Q Consensus       242 ~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~--~--~~~~~~  317 (901)
                      ..                              ...+..++.....|++||||+++++++.+++.|....  .  ......
T Consensus       289 ~~------------------------------l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~  338 (773)
T 2xau_A          289 SA------------------------------IRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGP  338 (773)
T ss_dssp             HH------------------------------HHHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred             HH------------------------------HHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCC
Confidence            00                              1123334444568999999999999999999997511  0  011235


Q ss_pred             eEEEEecCCCCHHHHHhhcCCCC-----CCCeEEEEecchhhcccCCCCeEEEEeCCCccccccccCCCccccccccccH
Q 046397          318 VLLLTCHGSMASSEQRLIFDEPE-----SGVRKIVLATNIAETSITINDVVFVIDCGKAKETSYDALNNTSCLLPSWIST  392 (901)
Q Consensus       318 ~~v~~lhs~l~~~eq~~i~~~f~-----~g~~kIIvaTniaetGIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSk  392 (901)
                      +.+.++||+|+.++|.++++.|+     +|.++||||||++|+|||||+|++|||+|++|.+.||+..++..|.+.|+|+
T Consensus       339 ~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~  418 (773)
T 2xau_A          339 LSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISK  418 (773)
T ss_dssp             EEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCH
T ss_pred             eEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCH
Confidence            77999999999999999999999     9999999999999999999999999999999999999999999999999999


Q ss_pred             hcHHHHhhhcCCCCCCceEEcCCcchh-hhcccCCCCcccccCccchhhhhhccCCCCHHHHhhhhcCCChHHHHHHHHH
Q 046397          393 VSAQQRRGRAGRVQPGECYRLYPRCVY-DAFAEYQLPEILRTPLQSLCLQIKSLRLGTIAGFLSRALQSPELLAVQNAIE  471 (901)
Q Consensus       393 a~~~QR~GRAGR~~~G~c~~L~s~~~~-~~l~~~~~PEi~r~~L~~~~L~~k~l~~~~~~~fl~~~l~pP~~~~v~~al~  471 (901)
                      ++|.||+|||||.++|.||+||++..+ +.|.++..|||+|.+|.+++|+++.++++++..|  .+++||+.+++..|++
T Consensus       419 ~s~~QR~GRaGR~~~G~~~~l~~~~~~~~~l~~~~~pEi~r~~L~~~~L~l~~~gi~~~~~f--~~~~~p~~~~i~~a~~  496 (773)
T 2xau_A          419 ASAQQRAGRAGRTRPGKCFRLYTEEAFQKELIEQSYPEILRSNLSSTVLELKKLGIDDLVHF--DFMDPPAPETMMRALE  496 (773)
T ss_dssp             HHHHHHHHGGGSSSSEEEEESSCHHHHHHTSCSSCCCGGGGSCCHHHHHHHHHTTCCCGGGC--CCSSCCCHHHHHHHHH
T ss_pred             HHHHhhccccCCCCCCEEEEEecHHHhcccccccCCCccccCcHHHHHHHHHHcCCCChhhc--cccCCCcHHHHHHHHH
Confidence            999999999999999999999999999 5699999999999999999999999999999888  8999999999999999


Q ss_pred             HHHHcCCccCCCccchhhhhhhcCCCChHHHHHHHHhhhcCChHHHHHHHHhhcCCCCccCCCChHHHHHHHHhhcCCCC
Q 046397          472 YLKIIGALDHNEELTVLGQYLAMLPMEPKLGKMLILGAIFNCLEPVLTIVAGLSVRDPFLAPMDKKDLAEAAKSQFSHDY  551 (901)
Q Consensus       472 ~L~~~gald~~~~lT~lG~~la~lpl~p~~~k~ll~~~~~~cl~~~l~iaa~ls~~~~f~~p~~~~~~~~~~~~~f~~~~  551 (901)
                      .|..+||||++|+||++|+.|+.||+||++||||+.|+.|+|++++++|||+|++++||+.|.+++++++.+|+.|++..
T Consensus       497 ~L~~lgald~~~~lT~lG~~~a~~pl~p~~~~~l~~~~~~~c~~~~l~i~a~ls~~~~f~~~~~~~~~~~~~~~~f~~~~  576 (773)
T 2xau_A          497 ELNYLACLDDEGNLTPLGRLASQFPLDPMLAVMLIGSFEFQCSQEILTIVAMLSVPNVFIRPTKDKKRADDAKNIFAHPD  576 (773)
T ss_dssp             HHHHTTSBCTTSCBCHHHHHHTTSSSCHHHHHHHHHGGGGTCHHHHHHHHHHHTSCCCBCCCTTCHHHHHHHHHTTCCTT
T ss_pred             HHHHcCCcccCCCcChhhhhhccccCCHHHHHHHHhhcccCchhHHHHHHHhcccCCcccCChHHHHHHHHHHHhccCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHHHHHHHHHhhcccc-hHHHHhhcCCCcchhhHHHHHHHHHHHHHhCCCCCCCCCccccCCCCHHHHHHHHHh
Q 046397          552 SDHLALVRAFEGWKDAERGLAG-YEYCWKNFLSAPSMKVIDSLRKEFLSLLKDTGLVDCDTSICNAWGRDERFIRAVICY  630 (901)
Q Consensus       552 sDhl~~l~af~~w~~~~~~~~~-~~~c~~~~l~~~~l~~~~~~r~ql~~~l~~~~~~~~~~~~~n~~s~~~~li~a~l~a  630 (901)
                      |||++++++|++|.+....+.. .+||++||||+++|+++.++|+||.++|.+.|+..... ..+ ...++..|+++||+
T Consensus       577 ~D~~~~l~~~~~~~~~~~~~~~~~~~c~~~~l~~~~l~~~~~~~~ql~~~~~~~~~~~~~~-~~~-~~~~~~~i~~~l~~  654 (773)
T 2xau_A          577 GDHITLLNVYHAFKSDEAYEYGIHKWCRDHYLNYRSLSAADNIRSQLERLMNRYNLELNTT-DYE-SPKYFDNIRKALAS  654 (773)
T ss_dssp             BHHHHHHHHHHHHTSHHHHHHCHHHHHHHTTBCHHHHHHHHHHHHHHHHHHHHTTCCCCCC-CTT-STTHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHhccccchHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcCCCcCCC-CCC-chhhHHHHHHHHHH
Confidence            9999999999999765422233 68999999999999999999999999999999864321 111 23456789999999


Q ss_pred             ccCCCccccccCCCCCccccccCC-eEEEccCCccCCcCCCCCCeEEEEEEeeecceeEeccCCCChHHHHHhcCcccc
Q 046397          631 GLYPGISSIVQNGKSSSLKTMEDG-QVFLYSNSVNARESEIPYPWLVFNEKMKVNSVFLKDSTAVSDSVLLLFGGSISQ  708 (901)
Q Consensus       631 glypnva~~~~~~~~~~~~t~~~~-~v~ihpsSv~~~~~~~~~~~lvy~e~~~t~~~~ir~~t~V~p~~llLfgg~~~~  708 (901)
                      |||||||+....  ...|.+..++ .|+|||+|++..    .++||||+|++.|++.|||++|+|+|.||..+++....
T Consensus       655 g~~~~~a~~~~~--~~~y~~~~~~~~~~ihp~s~l~~----~~~~~v~~e~~~t~~~~~~~~~~i~~~~l~~~~~~~~~  727 (773)
T 2xau_A          655 GFFMQVAKKRSG--AKGYITVKDNQDVLIHPSTVLGH----DAEWVIYNEFVLTSKNYIRTVTSVRPEWLIEIAPAYYD  727 (773)
T ss_dssp             HHTTSEEEECCC----CEEETTTCCEEEECTTCCCCT----TCSEEEEEEEEESSSEEEEEEEECCHHHHHHHCTTTSC
T ss_pred             hChHhheeeccC--CCcceEeeCCCEEEECCCcccCC----CCCEEEEEEeeccchhheeecccCCHHHHHHHHHHhee
Confidence            999999986532  2238776554 589999999953    26899999999999999999999999999999987653
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} Back     alignment and structure
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A Back     alignment and structure
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* Back     alignment and structure
>3i4u_A ATP-dependent RNA helicase DHX8; splicing, ATP-binding, hydrolase, mRNA processing, splicing, nucleotide-binding, nucleus, phosphoprotein, SPLI; 2.10A {Homo sapiens} Back     alignment and structure
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A Back     alignment and structure
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae} Back     alignment and structure
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ... Back     alignment and structure
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A Back     alignment and structure
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} Back     alignment and structure
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* Back     alignment and structure
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B Back     alignment and structure
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B Back     alignment and structure
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B Back     alignment and structure
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} Back     alignment and structure
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* Back     alignment and structure
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A Back     alignment and structure
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A Back     alignment and structure
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} Back     alignment and structure
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A Back     alignment and structure
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} Back     alignment and structure
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A Back     alignment and structure
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 Back     alignment and structure
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A Back     alignment and structure
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A Back     alignment and structure
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* Back     alignment and structure
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} Back     alignment and structure
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A Back     alignment and structure
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* Back     alignment and structure
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} Back     alignment and structure
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A Back     alignment and structure
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A* Back     alignment and structure
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} Back     alignment and structure
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* Back     alignment and structure
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens} Back     alignment and structure
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus} Back     alignment and structure
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 Back     alignment and structure
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A* Back     alignment and structure
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} Back     alignment and structure
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* Back     alignment and structure
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} Back     alignment and structure
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} Back     alignment and structure
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19 Back     alignment and structure
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* Back     alignment and structure
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1 Back     alignment and structure
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A Back     alignment and structure
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4} Back     alignment and structure
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B* Back     alignment and structure
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus} Back     alignment and structure
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A Back     alignment and structure
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A* Back     alignment and structure
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A Back     alignment and structure
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} Back     alignment and structure
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A Back     alignment and structure
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B* Back     alignment and structure
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A Back     alignment and structure
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus} Back     alignment and structure
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} Back     alignment and structure
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 Back     alignment and structure
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A Back     alignment and structure
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens} Back     alignment and structure
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19 Back     alignment and structure
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens} Back     alignment and structure
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19 Back     alignment and structure
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens} Back     alignment and structure
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A* Back     alignment and structure
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A* Back     alignment and structure
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens} Back     alignment and structure
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A* Back     alignment and structure
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A Back     alignment and structure
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens} Back     alignment and structure
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A* Back     alignment and structure
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19 Back     alignment and structure
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A Back     alignment and structure
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19 Back     alignment and structure
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens} Back     alignment and structure
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis} Back     alignment and structure
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19 Back     alignment and structure
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens} Back     alignment and structure
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens} Back     alignment and structure
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19 Back     alignment and structure
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens} Back     alignment and structure
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B* Back     alignment and structure
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens} Back     alignment and structure
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli} Back     alignment and structure
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23 Back     alignment and structure
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii} Back     alignment and structure
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus} Back     alignment and structure
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19 Back     alignment and structure
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1* Back     alignment and structure
>3adg_A F21M12.9 protein; HYL1, miRNA processing mechanism, RNA binding protein, gene regulation; 1.70A {Arabidopsis thaliana} PDB: 3adi_A Back     alignment and structure
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 Back     alignment and structure
>2cpn_A TAR RNA-binding protein 2; double-stranded RNA binding domain, DSRBD, DSRM., structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.50.1.1 Back     alignment and structure
>1uhz_A Staufen (RNA binding protein) homolog 2; DSRM, staufen homolog 2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1 Back     alignment and structure
>3adl_A RISC-loading complex subunit tarbp2; TRBP2, miRNA processing, gene regulation-RNA complex; 2.20A {Homo sapiens} Back     alignment and structure
>3adj_A F21M12.9 protein; HYL1, miRNA processing, RNA binding protein, gene regulation; 3.00A {Arabidopsis thaliana} PDB: 2l2m_A Back     alignment and structure
>1ekz_A DSRBDIII, maternal effect protein (staufen); structure, protein/RNA, protein DSRBD, RNA hairpin; NMR {Drosophila melanogaster} SCOP: d.50.1.1 PDB: 1stu_A Back     alignment and structure
>2l2n_A Hyponastic leave 1; DSRBD, miRNA, RNA binding protein, plant protein; NMR {Arabidopsis thaliana} Back     alignment and structure
>1whn_A Hypothetical protein riken cDNA 2310016K04; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1 Back     alignment and structure
>1whq_A RNA helicase A; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs6_A Back     alignment and structure
>2b7t_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l3c_A Back     alignment and structure
>2dix_A Interferon-inducible double stranded RNA- dependent protein kinase activator A; structure genomics, DSRM domain, hypothetical protein PRKRA; NMR {Homo sapiens} SCOP: d.50.1.1 Back     alignment and structure
>3llh_A RISC-loading complex subunit tarbp2; DSRBD, DSRM, microrna, RNA binding protein; 2.14A {Homo sapiens} Back     alignment and structure
>1di2_A XLRBPA, double stranded RNA binding protein A; protein-RNA complex, protein-RNA interactions, RNA-bining protein; 1.90A {Xenopus laevis} SCOP: d.50.1.1 Back     alignment and structure
>2b7v_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l2k_B Back     alignment and structure
>1x47_A DGCR8 protein; structural genomics, DSRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1 Back     alignment and structure
>2dmy_A Spermatid perinuclear RNA-binding protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1 Back     alignment and structure
>1x49_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1 Back     alignment and structure
>2khx_A Ribonuclease 3; drosha, RNA binding domain, hydrolase, gene regulation, NUCL protein, gene regulation,nuclear protein; NMR {Homo sapiens} Back     alignment and structure
>2l33_A Interleukin enhancer-binding factor 3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, DRBM; NMR {Homo sapiens} Back     alignment and structure
>1uil_A Double-stranded RNA-binding motif; structural genomics, DSRM, riken structural genomics/proteomics initiative, RSGI RNA binding protein; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs7_A Back     alignment and structure
>1x48_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1 Back     alignment and structure
>2ljh_A Double-stranded RNA-specific editase ADAR; DSRBD, DSRBM, editing, hydrolase; NMR {Drosophila melanogaster} Back     alignment and structure
>3p1x_A Interleukin enhancer-binding factor 3; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.90A {Homo sapiens} Back     alignment and structure
>1t4n_A Ribonuclease III; DSRBD, RNA-binding, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.50.1.1 Back     alignment and structure
>1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1 Back     alignment and structure
>1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1 Back     alignment and structure
>1t4o_A Ribonuclease III; RNT1P, DSRBD, RNA-binding, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: d.50.1.1 PDB: 1t4l_B 2lbs_B Back     alignment and structure
>2yt4_A Protein DGCR8; DSRBD, RNA binding domain, RNA binding protein; 2.60A {Homo sapiens} Back     alignment and structure
>2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A Back     alignment and structure
>1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1 Back     alignment and structure
>2yt4_A Protein DGCR8; DSRBD, RNA binding domain, RNA binding protein; 2.60A {Homo sapiens} Back     alignment and structure
>2l3j_A Double-stranded RNA-specific editase 1; editing, dsRNA recognition, DSRBM, hydrolase-RNA complex; NMR {Rattus norvegicus} Back     alignment and structure
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D* Back     alignment and structure
>2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomic protein structure initiative; 2.10A {Mycobacterium tuberculosis} Back     alignment and structure
>3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862, csgid, structura genomics; 2.21A {Campylobacter jejuni subsp} Back     alignment and structure
>2l3j_A Double-stranded RNA-specific editase 1; editing, dsRNA recognition, DSRBM, hydrolase-RNA complex; NMR {Rattus norvegicus} Back     alignment and structure
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A* Back     alignment and structure
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4} Back     alignment and structure
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* Back     alignment and structure
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A* Back     alignment and structure
>3rv0_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 2.29A {Vanderwaltozyma polyspora} Back     alignment and structure
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A* Back     alignment and structure
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A* Back     alignment and structure
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* Back     alignment and structure
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae} Back     alignment and structure
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A* Back     alignment and structure
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14 Back     alignment and structure
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* Back     alignment and structure
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A Back     alignment and structure
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A Back     alignment and structure
>2db2_A KIAA0890 protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} Back     alignment and structure
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} Back     alignment and structure
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* Back     alignment and structure
>3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, HEL hydrolase, nucleotide-binding, phosphoprotein, RN binding; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A Back     alignment and structure
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} Back     alignment and structure
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus} Back     alignment and structure
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A Back     alignment and structure
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} Back     alignment and structure
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* Back     alignment and structure
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 Back     alignment and structure
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus} Back     alignment and structure
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14 Back     alignment and structure
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12} Back     alignment and structure
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E* Back     alignment and structure
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} Back     alignment and structure
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A Back     alignment and structure
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 Back     alignment and structure
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B* Back     alignment and structure
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A* Back     alignment and structure
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} Back     alignment and structure
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* Back     alignment and structure
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} Back     alignment and structure
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* Back     alignment and structure
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A* Back     alignment and structure
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A Back     alignment and structure
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} Back     alignment and structure
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B* Back     alignment and structure
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} Back     alignment and structure
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi} Back     alignment and structure
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium} Back     alignment and structure
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* Back     alignment and structure
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp} Back     alignment and structure
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* Back     alignment and structure
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C* Back     alignment and structure
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A* Back     alignment and structure
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A* Back     alignment and structure
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} Back     alignment and structure
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} Back     alignment and structure
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} Back     alignment and structure
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A* Back     alignment and structure
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} Back     alignment and structure
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20 Back     alignment and structure
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 Back     alignment and structure
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} Back     alignment and structure
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A* Back     alignment and structure
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A Back     alignment and structure
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli} Back     alignment and structure
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* Back     alignment and structure
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B* Back     alignment and structure
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* Back     alignment and structure
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A Back     alignment and structure
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C Back     alignment and structure
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* Back     alignment and structure
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9 Back     alignment and structure
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* Back     alignment and structure
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae} Back     alignment and structure
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis} Back     alignment and structure
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F Back     alignment and structure
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A Back     alignment and structure
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A Back     alignment and structure
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>2kou_A Dicer-like protein 4; ATP-binding, endonuclease, helicase, hydrolase, nuclease, nucleotide-binding, nucleus, RNA- binding; NMR {Arabidopsis thaliana} Back     alignment and structure
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B Back     alignment and structure
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A Back     alignment and structure
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A* Back     alignment and structure
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} Back     alignment and structure
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 Back     alignment and structure
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A Back     alignment and structure
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} Back     alignment and structure
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli} Back     alignment and structure
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} Back     alignment and structure
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} Back     alignment and structure
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} Back     alignment and structure
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 Back     alignment and structure
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} Back     alignment and structure
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} Back     alignment and structure
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 Back     alignment and structure
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} Back     alignment and structure
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A Back     alignment and structure
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 Back     alignment and structure
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii} Back     alignment and structure
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A Back     alignment and structure
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} Back     alignment and structure
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} Back     alignment and structure
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 Back     alignment and structure
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A Back     alignment and structure
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* Back     alignment and structure
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni} Back     alignment and structure
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} Back     alignment and structure
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A Back     alignment and structure
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 Back     alignment and structure
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* Back     alignment and structure
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 Back     alignment and structure
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus} Back     alignment and structure
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A Back     alignment and structure
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 Back     alignment and structure
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A Back     alignment and structure
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* Back     alignment and structure
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} Back     alignment and structure
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* Back     alignment and structure
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} Back     alignment and structure
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* Back     alignment and structure
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} Back     alignment and structure
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A* Back     alignment and structure
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A Back     alignment and structure
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 Back     alignment and structure
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* Back     alignment and structure
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} Back     alignment and structure
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* Back     alignment and structure
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A* Back     alignment and structure
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} Back     alignment and structure
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} Back     alignment and structure
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A Back     alignment and structure
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* Back     alignment and structure
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A Back     alignment and structure
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} Back     alignment and structure
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A Back     alignment and structure
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 Back     alignment and structure
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} Back     alignment and structure
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* Back     alignment and structure
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* Back     alignment and structure
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} Back     alignment and structure
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} Back     alignment and structure
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* Back     alignment and structure
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* Back     alignment and structure
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* Back     alignment and structure
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 Back     alignment and structure
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 901
d1yksa2299 c.37.1.14 (A:325-623) YFV helicase domain {Yellow 8e-31
d1a1va1136 c.37.1.14 (A:190-325) HCV helicase domain {Human h 7e-25
d2bmfa2305 c.37.1.14 (A:178-482) Dengue virus helicase {Dengu 2e-23
d2bmfa2305 c.37.1.14 (A:178-482) Dengue virus helicase {Dengu 5e-17
d1yksa1140 c.37.1.14 (A:185-324) YFV helicase domain {Yellow 1e-14
d1x47a185 d.50.1.1 (A:8-92) Dgcr8 protein {Human (Homo sapie 1e-11
d1o0wa269 d.50.1.1 (A:168-236) RNase III, C-terminal domain 2e-09
d2nuga268 d.50.1.1 (A:151-218) RNase III, C-terminal domain 7e-08
d1wp9a2286 c.37.1.19 (A:201-486) putative ATP-dependent RNA h 7e-07
d1whna_128 d.50.1.1 (A:) tRNA-dihydrouridine synthase 2-like, 7e-07
d1uhza_89 d.50.1.1 (A:) staufen homolog 2 {Mouse (Mus muscul 6e-06
d2b7va171 d.50.1.1 (A:1-71) dsRNA-specific editase 1 {Rat (R 8e-06
d2cpna176 d.50.1.1 (A:150-225) TAR RNA-binding protein 2 {Hu 1e-05
d1uila_113 d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 { 4e-05
d1t4oa_81 d.50.1.1 (A:) RNase III, C-terminal domain {Baker' 6e-05
d1di2a_69 d.50.1.1 (A:) Double-stranded RNA-binding protein 6e-05
d1qu6a190 d.50.1.1 (A:1-90) dsRNA-dependent protein kinase p 1e-04
d1x48a176 d.50.1.1 (A:8-83) dsRNA-dependent protein kinase p 2e-04
d1whqa_99 d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 { 4e-04
d1gkub1237 c.37.1.16 (B:1-250) Helicase-like "domain" of reve 8e-04
d1a1va2299 c.37.1.14 (A:326-624) HCV helicase domain {Human h 9e-04
d1x49a185 d.50.1.1 (A:8-92) dsRNA-dependent protein kinase p 0.001
d2dmya184 d.50.1.1 (A:8-91) Spermatid perinuclear RNA-bindin 0.001
d2b7ta173 d.50.1.1 (A:1-73) dsRNA-specific editase 1 {Rat (R 0.001
d1hv8a1208 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase 0.001
d1oywa2206 c.37.1.19 (A:1-206) RecQ helicase domain {Escheric 0.002
d2p6ra3202 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus 0.003
d2i3ba1189 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 0.004
>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Length = 299 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

 Score =  120 bits (303), Expect = 8e-31
 Identities = 50/310 (16%), Positives = 84/310 (27%), Gaps = 50/310 (16%)

Query: 284 ERPGAVLVFMTGWDDINSLNDKLQANRILGDPTRVLLLTCHGSMASSEQRLIFDEPESGV 343
                   F+      N +   L+          V++L  +      E   I  +     
Sbjct: 34  ADKRPTAWFLPSIRAANVMAASLRKAG-----KSVVVL--NRKTFEREYPTIKQKK---- 82

Query: 344 RKIVLATNIAETSITINDVVFVIDCGKA-KETSYDALNNTSCLLPSWISTVSAQQRRGRA 402
              +LAT+IAE    +  V  V+DC  A K    D     +   P  IS  SA QRRGR 
Sbjct: 83  PDFILATDIAEMGANL-CVERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRI 141

Query: 403 GRVQPGECYRLYPRCVYDAFAEYQLPEILRTPLQSLCLQIKSLRLGTIAGFLSRA---LQ 459
           GR  P      Y     +  +E     +       L   ++ +R G +A           
Sbjct: 142 GRN-PNRDGDSY--YYSEPTSENNAHHVCWLEASMLLDNME-VRGGMVAPLYGVEGTKTP 197

Query: 460 SPELLAVQNAIEYLKIIGALDHNEELTVLGQYLAMLPMEPKLGKMLILGAIFNCLEPVLT 519
                      +       + + +    L   +A   ++    K                
Sbjct: 198 VSPGEMRLRDDQRKVFRELVRNCDLPVWLSWQVAKAGLKTNDRKWC-------------- 243

Query: 520 IVAGLSVRDPFLAPMDKKDLAEAA-KSQFSHDYSDHLALVRAFEGWKDAERGLAGYEYCW 578
                     F  P + + L ++    +          L      W D  R  +      
Sbjct: 244 ----------FEGPEEHEILNDSGETVKCRAPGGAKKPLRPR---WCDE-RVSSDQS-AL 288

Query: 579 KNFLSAPSMK 588
             F+     +
Sbjct: 289 SEFIKFAEGR 298
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Length = 136 Back     information, alignment and structure
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Length = 305 Back     information, alignment and structure
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Length = 305 Back     information, alignment and structure
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Length = 140 Back     information, alignment and structure
>d1x47a1 d.50.1.1 (A:8-92) Dgcr8 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 85 Back     information, alignment and structure
>d1o0wa2 d.50.1.1 (A:168-236) RNase III, C-terminal domain {Thermotoga maritima [TaxId: 2336]} Length = 69 Back     information, alignment and structure
>d2nuga2 d.50.1.1 (A:151-218) RNase III, C-terminal domain {Aquifex aeolicus [TaxId: 63363]} Length = 68 Back     information, alignment and structure
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 286 Back     information, alignment and structure
>d1whna_ d.50.1.1 (A:) tRNA-dihydrouridine synthase 2-like, Dus2l (2310016k04Rik) {Mouse (Mus musculus) [TaxId: 10090]} Length = 128 Back     information, alignment and structure
>d1uhza_ d.50.1.1 (A:) staufen homolog 2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 89 Back     information, alignment and structure
>d2b7va1 d.50.1.1 (A:1-71) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 71 Back     information, alignment and structure
>d2cpna1 d.50.1.1 (A:150-225) TAR RNA-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 76 Back     information, alignment and structure
>d1uila_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus musculus) [TaxId: 10090]} Length = 113 Back     information, alignment and structure
>d1t4oa_ d.50.1.1 (A:) RNase III, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 81 Back     information, alignment and structure
>d1di2a_ d.50.1.1 (A:) Double-stranded RNA-binding protein A, second dsRBD {Xenopus laevis [TaxId: 8355]} Length = 69 Back     information, alignment and structure
>d1qu6a1 d.50.1.1 (A:1-90) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]} Length = 90 Back     information, alignment and structure
>d1x48a1 d.50.1.1 (A:8-83) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]} Length = 76 Back     information, alignment and structure
>d1whqa_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus musculus) [TaxId: 10090]} Length = 99 Back     information, alignment and structure
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 237 Back     information, alignment and structure
>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Length = 299 Back     information, alignment and structure
>d1x49a1 d.50.1.1 (A:8-92) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]} Length = 85 Back     information, alignment and structure
>d2dmya1 d.50.1.1 (A:8-91) Spermatid perinuclear RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]} Length = 84 Back     information, alignment and structure
>d2b7ta1 d.50.1.1 (A:1-73) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 73 Back     information, alignment and structure
>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 208 Back     information, alignment and structure
>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} Length = 206 Back     information, alignment and structure
>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 202 Back     information, alignment and structure
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Length = 189 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query901
d2bmfa2305 Dengue virus helicase {Dengue virus type 2 [TaxId: 100.0
d1yksa2299 YFV helicase domain {Yellow fever virus [TaxId: 11 99.94
d2p6ra3202 Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 99.77
d1veca_206 DEAD box RNA helicase rck/p54 {Human (Homo sapiens 99.76
d1c4oa2174 Nucleotide excision repair enzyme UvrB {Thermus th 99.76
d2g9na1218 Initiation factor 4a {Human (Homo sapiens) [TaxId: 99.75
d1fuka_162 Initiation factor 4a {Baker's yeast (Saccharomyces 99.74
d2j0sa1222 Probable ATP-dependent RNA helicase DDX48 {Human ( 99.74
d1qdea_212 Initiation factor 4a {Baker's yeast (Saccharomyces 99.74
d1t5la2181 Nucleotide excision repair enzyme UvrB {Bacillus c 99.73
d1t6na_207 Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo 99.73
d2rb4a1168 ATP-dependent RNA helicase DDX25 {Human (Homo sapi 99.73
d1hv8a1208 Putative DEAD box RNA helicase {Archaeon Methanoco 99.72
d1a1va1136 HCV helicase domain {Human hepatitis C virus (HCV) 99.72
d2j0sa2168 Probable ATP-dependent RNA helicase DDX48 {Human ( 99.72
d1s2ma2171 Putative ATP-dependent RNA helicase DHH1 {Baker's 99.71
d1yksa1140 YFV helicase domain {Yellow fever virus [TaxId: 11 99.7
d1oywa3200 RecQ helicase domain {Escherichia coli [TaxId: 562 99.7
d1hv8a2155 Putative DEAD box RNA helicase {Archaeon Methanoco 99.7
d1t5ia_168 Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo 99.7
d1wrba1238 putative ATP-dependent RNA helicase VlgB {Flatworm 99.68
d1wp9a1200 putative ATP-dependent RNA helicase PF2015 {Pyroco 99.68
d1q0ua_209 Probable DEAD box RNA helicase YqfR {Bacillus stea 99.67
d1s2ma1206 Putative ATP-dependent RNA helicase DHH1 {Baker's 99.66
d1jr6a_138 HCV helicase domain {Human hepatitis C virus (HCV) 99.62
d1gkub1237 Helicase-like "domain" of reverse gyrase {Archaeon 99.62
d2p6ra4201 Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 99.61
d1oywa2206 RecQ helicase domain {Escherichia coli [TaxId: 562 99.59
d1wp9a2286 putative ATP-dependent RNA helicase PF2015 {Pyroco 99.57
d2fz4a1206 DNA repair protein RAD25 {Archaeoglobus fulgidus [ 99.48
d1gm5a4206 RecG helicase domain {Thermotoga maritima [TaxId: 99.45
d1rifa_282 DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665] 99.42
d2eyqa5211 Transcription-repair coupling factor, TRCF {Escher 99.41
d1a1va2299 HCV helicase domain {Human hepatitis C virus (HCV) 99.35
d1gm5a3264 RecG helicase domain {Thermotoga maritima [TaxId: 99.33
d2eyqa3233 Transcription-repair coupling factor, TRCF {Escher 99.32
d2fwra1200 DNA repair protein RAD25 {Archaeoglobus fulgidus [ 99.3
d1whna_128 tRNA-dihydrouridine synthase 2-like, Dus2l (231001 99.17
d1x47a185 Dgcr8 protein {Human (Homo sapiens) [TaxId: 9606]} 99.13
d1gkub2248 Helicase-like "domain" of reverse gyrase {Archaeon 99.12
d1whqa_99 ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus mus 99.12
d2dixa173 Interferon-inducible double stranded RNA-dependent 99.11
d1di2a_69 Double-stranded RNA-binding protein A, second dsRB 99.09
d2nuga268 RNase III, C-terminal domain {Aquifex aeolicus [Ta 99.06
d1uhza_89 staufen homolog 2 {Mouse (Mus musculus) [TaxId: 10 99.06
d2cpna176 TAR RNA-binding protein 2 {Human (Homo sapiens) [T 99.03
d1o0wa269 RNase III, C-terminal domain {Thermotoga maritima 99.02
d1ekza_76 Staufen, domain III {Fruit fly (Drosophila melanog 98.93
d1qu6a190 dsRNA-dependent protein kinase pkr {Human (Homo sa 98.84
d1x49a185 dsRNA-dependent protein kinase pkr {Mouse (Mus mus 98.79
d1qu6a289 dsRNA-dependent protein kinase pkr {Human (Homo sa 98.78
d1t4oa_81 RNase III, C-terminal domain {Baker's yeast (Sacch 98.71
d2b7va171 dsRNA-specific editase 1 {Rat (Rattus norvegicus) 98.69
d2b7ta173 dsRNA-specific editase 1 {Rat (Rattus norvegicus) 98.63
d1x48a176 dsRNA-dependent protein kinase pkr {Mouse (Mus mus 98.58
d1uila_113 ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus mus 98.55
d2dmya184 Spermatid perinuclear RNA-binding protein {Human ( 98.45
d1z3ix1346 Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI 98.39
d1z3ix2298 Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI 98.38
d1z5za1244 Helicase of the SNF2/Rad54 hamily {Sulfolobus solf 98.33
d1tf5a4175 Translocation ATPase SecA, nucleotide-binding doma 98.28
d1z63a1230 Helicase of the SNF2/Rad54 hamily {Sulfolobus solf 98.22
d1w36d1359 Exodeoxyribonuclease V alpha chain (RecD) {Escheri 97.86
d1okkd2207 GTPase domain of the signal recognition particle r 97.41
d2qy9a2211 GTPase domain of the signal recognition particle r 97.36
d1vmaa2213 GTPase domain of the signal recognition particle r 97.33
d1nkta4219 Translocation ATPase SecA, nucleotide-binding doma 97.2
d1ls1a2207 GTPase domain of the signal sequence recognition p 97.16
d1tf5a3273 Translocation ATPase SecA, nucleotide-binding doma 97.06
d1j8yf2211 GTPase domain of the signal sequence recognition p 96.74
d1uaaa1306 DEXX box DNA helicase {Escherichia coli, RepD [Tax 96.61
d1nkta3288 Translocation ATPase SecA, nucleotide-binding doma 96.43
d1a5ta2207 delta prime subunit of DNA polymerase III, N-domai 96.29
d1pjra1318 DEXX box DNA helicase {Bacillus stearothermophilus 96.18
d1njfa_239 delta prime subunit of DNA polymerase III, N-domai 95.96
d2gnoa2198 gamma subunit of DNA polymerase III, N-domain {The 95.8
d1sxjc2227 Replication factor C3 {Baker's yeast (Saccharomyce 95.63
d1sxjb2224 Replication factor C4 {Baker's yeast (Saccharomyce 95.55
d2i3ba1189 Cancer-related NTPase, C1orf57 {Human (Homo sapien 95.39
d1iqpa2231 Replication factor C {Archaeon Pyrococcus furiosus 95.3
g1qhh.1623 DEXX box DNA helicase {Bacillus stearothermophilus 94.95
d1sxjd2237 Replication factor C2 {Baker's yeast (Saccharomyce 94.5
d2b8ta1139 Thymidine kinase, TK1, N-terminal domain {Ureaplas 94.48
d1l8qa2213 Chromosomal replication initiation factor DnaA {Aq 94.42
d1sxje2252 Replication factor C5 {Baker's yeast (Saccharomyce 94.34
d1ye8a1178 Hypothetical kinase-like protein Aq_1292 {Aquifex 93.84
d1fnna2276 CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T 93.26
d1g6oa_323 Hexameric traffic ATPase, HP0525 {Helicobacter pyl 92.81
d1xx6a1141 Thymidine kinase, TK1, N-terminal domain {Clostrid 92.65
d1r6bx2268 ClpA, an Hsp100 chaperone, AAA+ modules {Escherich 92.45
d1khta_190 Adenylate kinase {Archaeon Methanococcus voltae [T 92.1
d1ly1a_152 Polynucleotide kinase, kinase domain {Bacteriophag 91.72
d1p9ra_401 Extracellular secretion NTPase EpsE {Vibrio choler 91.53
d1ny5a2247 Transcriptional activator sigm54 (NtrC1), C-termin 91.46
d3adka_194 Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} 91.4
d1lw7a2192 Transcriptional regulator NadR, ribosylnicotinamid 91.09
d1zp6a1176 Hypothetical protein Atu3015 {Agrobacterium tumefa 90.83
d1tf7a2242 Circadian clock protein KaiC {Synechococcus sp. st 90.77
d1kaga_169 Shikimate kinase (AroK) {Escherichia coli [TaxId: 90.68
d2fnaa2283 Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ 90.66
d1knqa_171 Gluconate kinase {Escherichia coli [TaxId: 562]} 90.61
d2bdta1176 Hypothetical protein BH3686 {Bacillus halodurans [ 89.82
d1qhxa_178 Chloramphenicol phosphotransferase {Streptomyces v 89.78
d1xbta1133 Thymidine kinase, TK1, N-terminal domain {Human (H 89.2
d1n0wa_242 DNA repair protein Rad51, catalytic domain {Human 88.9
d1rkba_173 Adenylate kinase {Human (Homo sapiens), isoenzyme 88.85
d1pzna2254 DNA repair protein Rad51, catalytic domain {Archae 88.66
d1zaka1189 Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} 88.61
d1y63a_174 Probable kinase LmjF30.1890 {Leishmania major [Tax 88.57
d1gm5a3264 RecG helicase domain {Thermotoga maritima [TaxId: 88.18
d1ukza_196 Uridylate kinase {Baker's yeast (Saccharomyces cer 87.71
d1teva_194 UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] 87.58
d1qf9a_194 UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 87.51
d1rz3a_198 Hypothetical protein rbstp0775 {Bacillus stearothe 87.44
d1t5la1413 Nucleotide excision repair enzyme UvrB {Bacillus c 87.37
d1s3ga1182 Adenylate kinase {Bacillus globisporus [TaxId: 145 87.0
d1zina1182 Adenylate kinase {Bacillus stearothermophilus [Tax 86.87
d1znwa1182 Guanylate kinase {Mycobacterium tuberculosis [TaxI 86.86
d1e4va1179 Adenylate kinase {Escherichia coli [TaxId: 562]} 86.77
d1cr2a_277 Gene 4 protein (g4p, DNA primase), helicase domain 86.64
d1m8pa3183 ATP sulfurylase C-terminal domain {Fungus (Penicil 86.61
d1ofha_309 HslU {Haemophilus influenzae [TaxId: 727]} 86.59
d1qvra3315 ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 86.58
d1v5wa_258 Meiotic recombination protein DMC1/LIM15 homolog { 86.54
d2eyqa3233 Transcription-repair coupling factor, TRCF {Escher 86.46
d1szpa2251 DNA repair protein Rad51, catalytic domain {Baker' 85.71
d2cdna1181 Adenylate kinase {Mycobacterium tuberculosis [TaxI 85.63
d1ak2a1190 Adenylate kinase {Cow (Bos taurus), mitochondrial 85.54
d1nksa_194 Adenylate kinase {Archaeon Sulfolobus acidocaldari 85.52
d1np6a_170 Molybdopterin-guanine dinucleotide biosynthesis pr 85.34
d1tf7a1242 Circadian clock protein KaiC {Synechococcus sp. st 85.31
d2i1qa2258 DNA repair protein Rad51, catalytic domain {Archae 85.15
d1in4a2238 Holliday junction helicase RuvB {Thermotoga mariti 85.1
d1x6va3195 Adenosine-5'phosphosulfate kinase (APS kinase) {Hu 84.4
d1e6ca_170 Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax 84.32
d1ckea_225 CMP kinase {Escherichia coli [TaxId: 562]} 84.25
d1ixsb2239 Holliday junction helicase RuvB {Thermus thermophi 83.86
d1w36b1485 Exodeoxyribonuclease V beta chain (RecB), N-termin 83.74
d1akya1180 Adenylate kinase {Baker's yeast (Saccharomyces cer 83.69
d1g41a_443 HslU {Haemophilus influenzae [TaxId: 727]} 83.45
d1viaa_161 Shikimate kinase (AroK) {Campylobacter jejuni [Tax 83.13
d1yj5a2172 5' polynucleotide kinase-3' phosphatase, C-termina 83.11
d2ak3a1189 Adenylate kinase {Cow (Bos taurus), mitochondrial 82.92
d1jbka_195 ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} 82.58
d1sxja2253 Replication factor C1 {Baker's yeast (Saccharomyce 82.52
d2pmka1241 Haemolysin B ATP-binding protein {Escherichia coli 82.14
d1gvnb_273 Plasmid maintenance system epsilon/zeta, toxin zet 82.09
d1jj7a_251 Peptide transporter Tap1, C-terminal ABC domain {H 81.99
d2a5yb3277 CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI 81.95
d1s96a_205 Guanylate kinase {Escherichia coli [TaxId: 562]} 81.5
d2hyda1255 Putative multidrug export ATP-binding/permease pro 81.36
d1l2ta_230 MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 80.93
d1gkya_186 Guanylate kinase {Baker's yeast (Saccharomyces cer 80.82
d1sgwa_200 Putative ABC transporter PF0895 {Pyrococcus furios 80.12
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: Dengue virus helicase
species: Dengue virus type 2 [TaxId: 11060]

Probab=100.00  E-value=4e-33  Score=302.81  Aligned_cols=294  Identities=18%  Similarity=0.140  Sum_probs=206.8

Q ss_pred             HHHcCCeEEEEcCCCChHHHHHHHHHHHHHHhhcCCCeeEEEEecchHHHHHHHHHHHHHHhCCccCcEeeEEEeccccc
Q 046397           20 AISQNQVVIISGETGCGKTTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGESVGYKVRLEGMK   99 (901)
Q Consensus        20 ~i~~~~~viI~~~TGsGKTtq~p~~ile~~~~~~~~~~~~IlvtqPrr~la~qva~rva~e~~~~~g~~vGy~vr~e~~~   99 (901)
                      .++++++++|.||||||||++++.++++.....+  .  +++|++|+|+||.|++++++...    ....++.  .+...
T Consensus         5 ~~~~~~~~lv~~~TGsGKT~~~l~~~~~~~~~~~--~--~~lvi~Ptr~La~q~~~~l~~~~----~~~~~~~--~~~~~   74 (305)
T d2bmfa2           5 IFRKKRLTIMDLHPGAGKTKRYLPAIVREAIKRG--L--RTLILAPTRVVAAEMEEALRGLP----IRYQTPA--IRAEH   74 (305)
T ss_dssp             SSSTTCEEEECCCTTSSTTTTHHHHHHHHHHHHT--C--CEEEEESSHHHHHHHHHHTTTSC----CBCCC---------
T ss_pred             HhhcCCcEEEEECCCCCHHHHHHHHHHHHHHhcC--C--EEEEEccHHHHHHHHHHHHhcCC----cceeeeE--Eeecc
Confidence            3568999999999999999988878877765542  2  46666799999999988874321    1111221  22334


Q ss_pred             CCCceEEEEcHHHHHHHHhcCCCCCCceEEEEecCcccCcchhHHHHHHHHHHhhCCCceEEEeccCCCHHHHHhhhCCC
Q 046397          100 GRDTRLLFCTTGILLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRPELRLVLMSATLDAELFSSYFGGA  179 (901)
Q Consensus       100 ~~~t~Ii~~T~g~Llr~L~~~~~l~~~~~IIIDE~HeR~~~~d~ll~~lk~ll~~~~~~kiIlmSATl~~~~f~~yf~~~  179 (901)
                      ...+.|+++|+++|...+..+..+.++++|||||+|+.+.....+..+++.+. .+++.++++||||++....       
T Consensus        75 ~~~~~i~~~t~~~l~~~~~~~~~~~~~~~vViDE~H~~~~~~~~~~~~l~~~~-~~~~~~~v~~SAT~~~~~~-------  146 (305)
T d2bmfa2          75 TGREIVDLMCHATFTMRLLSPIRVPNYNLIIMDEAHFTDPASIAARGYISTRV-EMGEAAGIFMTATPPGSRD-------  146 (305)
T ss_dssp             -CCCSEEEEEHHHHHHHHTSSSCCCCCSEEEEESTTCCSHHHHHHHHHHHHHH-HHTSCEEEEECSSCTTCCC-------
T ss_pred             cCccccccCCcHHHHHHHhcCccccceeEEEeeeeeecchhhHHHHHHHHHhh-ccccceEEEeecCCCccee-------
Confidence            46688999999999998888888999999999999986555555566665543 3567899999999854311       


Q ss_pred             cEEeeCCccccceEEeccchhhhcccccCCCCCCcchhhHHHhHhhcccchhhhhhhHHHHHHHHHhhcccccchhhhhh
Q 046397          180 TVINIPGFTYPVRTHFLEDILDMTGYRLTPYNQIDDYGQEKMWKMSKQAPRKRKSQIASAVEDTLKAANFNEYSSQTRES  259 (901)
Q Consensus       180 ~~i~i~gr~~pV~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~  259 (901)
                         ......+|+.......         .      ..               .                           
T Consensus       147 ---~~~~~~~~~~~~~~~~---------~------~~---------------~---------------------------  166 (305)
T d2bmfa2         147 ---PFPQSNAPIMDEEREI---------P------ER---------------S---------------------------  166 (305)
T ss_dssp             ---SSCCCSSCEEEEECCC---------C------CS---------------C---------------------------
T ss_pred             ---eecccCCcceEEEEec---------c------HH---------------H---------------------------
Confidence               1111122222111000         0      00               0                           


Q ss_pred             cccCCCCCCchhhHHHHHHHHHhhcCCCcEEEEcCCHHHHHHHHHHHHhCccCCCCCceEEEEecCCCCHHHHHhhcCCC
Q 046397          260 LSCWNPDCIGFNLIEYVLCYICEKERPGAVLVFMTGWDDINSLNDKLQANRILGDPTRVLLLTCHGSMASSEQRLIFDEP  339 (901)
Q Consensus       260 l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lhs~l~~~eq~~i~~~f  339 (901)
                            ....       ...+  ...++++||||+++++++.+++.|.+.+..       +..+||+++..++    ..+
T Consensus       167 ------~~~~-------~~~~--~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~-------~~~l~~~~~~~~~----~~~  220 (305)
T d2bmfa2         167 ------WNSG-------HEWV--TDFKGKTVWFVPSIKAGNDIAACLRKNGKK-------VIQLSRKTFDSEY----IKT  220 (305)
T ss_dssp             ------CSSC-------CHHH--HSSCSCEEEECSCHHHHHHHHHHHHHHTCC-------CEECCTTCHHHHG----GGG
T ss_pred             ------HHHH-------HHHH--HhhCCCEEEEeccHHHHHHHHHHHHhCCCC-------EEEeCCcChHHHH----hhh
Confidence                  0000       0011  234689999999999999999999876432       5689999865543    456


Q ss_pred             CCCCeEEEEecchhhcccCCCCeEEEEeCCCccc--cccccCCCccccccccccHhcHHHHhhhcCCCCCCceE-EcCCc
Q 046397          340 ESGVRKIVLATNIAETSITINDVVFVIDCGKAKE--TSYDALNNTSCLLPSWISTVSAQQRRGRAGRVQPGECY-RLYPR  416 (901)
Q Consensus       340 ~~g~~kIIvaTniaetGIdIp~V~~VId~G~~k~--~~yd~~~~~~~l~~~~iSka~~~QR~GRAGR~~~G~c~-~L~s~  416 (901)
                      ++|.++++|||+++++|+|+ +++.|||+|....  ..||++.....+...++|+++|.||+|||||.+.|..+ .+|..
T Consensus       221 ~~~~~~~lvaT~~~~~G~~~-~~~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GR~GR~~~~~~~~~~~~~  299 (305)
T d2bmfa2         221 RTNDWDFVVTTDISEMGANF-KAERVIDPRRCMKPVILTDGEERVILAGPMPVTHSSAAQRRGRVGRNPKNENDQYIYMG  299 (305)
T ss_dssp             GTSCCSEEEECGGGGTTCCC-CCSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCSSSCCCEEEEECS
T ss_pred             hccchhhhhhhHHHHhcCCC-CccEEEEcCCceeeeEecCCCCceEEeccccCCHHHHhhhhcCcCcCCCCceEEEEECC
Confidence            78899999999999999999 6889999997654  45888888888888999999999999999999776655 45665


Q ss_pred             ch
Q 046397          417 CV  418 (901)
Q Consensus       417 ~~  418 (901)
                      ..
T Consensus       300 ~~  301 (305)
T d2bmfa2         300 EP  301 (305)
T ss_dssp             CC
T ss_pred             CC
Confidence            43
>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Back     information, alignment and structure
>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} Back     information, alignment and structure
>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Back     information, alignment and structure
>d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Back     information, alignment and structure
>d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} Back     information, alignment and structure
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Back     information, alignment and structure
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} Back     information, alignment and structure
>d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Back     information, alignment and structure
>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1whna_ d.50.1.1 (A:) tRNA-dihydrouridine synthase 2-like, Dus2l (2310016k04Rik) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1x47a1 d.50.1.1 (A:8-92) Dgcr8 protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1whqa_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2dixa1 d.50.1.1 (A:7-79) Interferon-inducible double stranded RNA-dependent protein kinase activator A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1di2a_ d.50.1.1 (A:) Double-stranded RNA-binding protein A, second dsRBD {Xenopus laevis [TaxId: 8355]} Back     information, alignment and structure
>d2nuga2 d.50.1.1 (A:151-218) RNase III, C-terminal domain {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1uhza_ d.50.1.1 (A:) staufen homolog 2 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2cpna1 d.50.1.1 (A:150-225) TAR RNA-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1o0wa2 d.50.1.1 (A:168-236) RNase III, C-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1ekza_ d.50.1.1 (A:) Staufen, domain III {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1qu6a1 d.50.1.1 (A:1-90) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x49a1 d.50.1.1 (A:8-92) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1qu6a2 d.50.1.1 (A:91-179) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1t4oa_ d.50.1.1 (A:) RNase III, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2b7va1 d.50.1.1 (A:1-71) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d2b7ta1 d.50.1.1 (A:1-73) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1x48a1 d.50.1.1 (A:8-83) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1uila_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2dmya1 d.50.1.1 (A:8-91) Spermatid perinuclear RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Back     information, alignment and structure
>d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Back     information, alignment and structure
>d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} Back     information, alignment and structure
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1nkta4 c.37.1.19 (A:397-615) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} Back     information, alignment and structure
>d1tf5a3 c.37.1.19 (A:1-226,A:349-395) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} Back     information, alignment and structure
>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} Back     information, alignment and structure
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} Back     information, alignment and structure
>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]} Back     information, alignment and structure
>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Back     information, alignment and structure
>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]} Back     information, alignment and structure
>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} Back     information, alignment and structure
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} Back     information, alignment and structure
>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure
>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} Back     information, alignment and structure
>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} Back     information, alignment and structure
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} Back     information, alignment and structure
>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} Back     information, alignment and structure
>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} Back     information, alignment and structure
>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} Back     information, alignment and structure
>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} Back     information, alignment and structure
>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} Back     information, alignment and structure
>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} Back     information, alignment and structure
>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} Back     information, alignment and structure
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} Back     information, alignment and structure
>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Back     information, alignment and structure
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} Back     information, alignment and structure
>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} Back     information, alignment and structure
>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1w36b1 c.37.1.19 (B:1-485) Exodeoxyribonuclease V beta chain (RecB), N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} Back     information, alignment and structure
>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} Back     information, alignment and structure
>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} Back     information, alignment and structure
>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} Back     information, alignment and structure
>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure