Citrus Sinensis ID: 046404

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-----
Protein Sequence
MNRLSRLVTPINSPKSRRFFTFITTVKSQIPLRRGPTSLPLSLTKQFSPLLSTRITSFATANDPNFPKMDPNPPESGEEFVHVDPLSESIVSLGDEVRDESSDRDETNGAVPVPEETKKVLPEELPRSVVILTCDSTAEGGTCDVYLVGTAHVSKESCREVEAIIDFLKPQVVFLELCSSRVSMLTPQNLKVPTVGEMVDMWKKKHNTFGILYSWFLAKVASHLEIFPGSEFRVAFEEAMKYGGKVILGDRPVQITLRRTWEKMPLWHKIKLLYSFLFQAFFLPSAEDLNRMLKEMDDVDMLTLVIQEMSKAFPTLMETLVHERDQYMSSTLLKVATEHSSVVAVVGKGHLQGIKNYWKQPVPVHDLMTIPSPKPAVSALKVLSSLGVAVAGVAIISGIYINCKK
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccccccEEEEEEcccccHHHHHHHHHHHHHHcccEEEEEccHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccEEEEccccHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccHHHHHHHHHccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEccccHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHEEcccc
Secondary Structure Prediction (SSPRO)
ccccHEEEEEcccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccHccccccccccEEEEEccccccccccEEEEEEEEEccHHHHHHHHHHHHHccccEEEEEEcHHHHHHccccHcccccHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccEEEEcccccHHHHHHHHHccHHHHHHHHHHHHHHHcccccccccHHHHHHHHccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEcccccHHHHHHHcccccHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mnrlsrlvtpinspksrrfFTFITTVksqiplrrgptslplsltkqfspLLSTRItsfatandpnfpkmdpnppesgeefvhvdplsesIVSLgdevrdessdrdetngavpvpeetkkvlpeelprSVVILTcdstaeggtcdvyLVGTAHVSKESCREVEAIIDFLKPQVVFLELCSsrvsmltpqnlkvptvgEMVDMWKKKHNTFGILYSWFLAKVASHleifpgsefRVAFEEAMKYGgkvilgdrpvqITLRRTWEKMPLWHKIKLLYSFLFQAFFLPSAEDLNRMLKEMDDVDMLTLVIQEMSKAFPTLMETLVHERDQYMSSTLLKVATEHSSVVAVVGKGHLQGiknywkqpvpvhdlmtipspkpAVSALKVLSSLGVAVAGVAIISGIYINCKK
Flexible Loop (DISEMBL)
mnrlsrlvtpinspksrrfftfittvksqiplrrgptslplSLTKQFSPLLSTRITSfatandpnfpkMDPNPPESGEEFVHVDPLSESIVSLGDevrdessdrdetngavpvpeetkkvlpeelprSVVILTCDstaeggtcDVYLVGTAHVSKESCREVEAIIDFLKPQVVFLELCSSrvsmltpqnlkvptVGEMVDMWKKKHNTFGILYSWFLAKVASHLEIFPGSEFRVAFEEAMKyggkvilgdrpvQITLRRTWEKMPLWHKIKLLYSFLFQAFFLPSAEDLNRMLKEMDDVDMLTLVIQEMSKAFPTLMETLVHERDQYMSSTLLKVATEHSSVVAVVGKGHLQGIKNYWKQPVPVHDLMTIPSPKPAVSALKVLSSLGVAVAGVAIISgiyinckk
Low Complexity Region (SEG)
MNRLSRLVTPINSPKSRRFFTFITTVKSQIPLRRGPTSLPLSLTKQFSPLLSTRITSFATANDPNFPKMDPNPPESGEEFVHVDPLSESIVSLGdevrdessdrdeTNGAVPVPEETKKVLPEELPRSVVILTCDSTAEGGTCDVYLVGTAHVSKESCREVEAIIDFLKPQVVFLELCSSRVSMLTPQNLKVPTVGEMVDMWKKKHNTFGILYSWFLAKVASHLEIFPGSEFRVAFEEAMKYGGKVILGDRPVQITLRRTWEKMPLWHKIKLLYSFLFQAFFLPSAEDLNRMLKEMDDVDMLTLVIQEMSKAFPTLMETLVHERDQYMSSTLLKVATEHSSVVAVVGKGHLQGIKNYWKQPVPVHDLMTIPSPKPAVSALKVLSSLGVAVAGVAIISGIYINCKK
Disordered region (IsUnstruct)
*****************RFFTFITTVKSQIPLR*********************************************************************************************RSVVILTCDSTAEGGTCDVYLVGTAHVSKESCREVEAIIDFLKPQVVFLELCSSRVSMLTPQNLKVPTVGEMVDMWKKKHNTFGILYSWFLAKVASHLEIFPGSEFRVAFEEAMKYGGKVILGDRPVQITLRRTWEKMPLWHKIKLLYSFLFQAFFLPSAEDLNRMLKEMDDVDMLTLVIQEMSKAFPTLMETLVHERDQYMSSTLLKVATEHSSVVAVVGKGHLQGIKNYWKQPVPVHDLMTIPSPKPAVSALKVLSSLGVAVAGVAIISGIYINC**
Disordered Region (DISOPRED)
***********NSPK**RFFTFIT*********************Q**************************************************************************************TCD**A*GGTCDVYLVGTAHVSKESCREVEAIIDFLKPQVVFLELCSSRVSMLTPQNLKVPTVGEMVDMWKKKHNTFGILYSWFLAKVASHLEIFPGSEFRVAFEEAMKYGGKVILGDRPVQITLRRTWEKMPLWHKIKLLYSFLFQAF*******************MLTLVIQEMSKAFPTLMETLVHERDQYMSSTLLKVATEHSSVVAVVGKGHLQGIKNYWKQPVPV************VSALKVLSSLGVAVAGVAIISGIYINCKK
Disordered Region (DISEMBL)
MNRLSRLVTPINSPKSRRFFTFITTVKSQIPLRRGPTSLPLSLTKQFSPLLSTRITSFATANDPNFPKMDPNPPESGEEFVHVDPLSESIVSLG*****************PVPEETKKVLPEELPRSVVILTCDSTAEGGTCDVYLVGTAHVSKESCREVEAIIDFLKPQVVFLELCSSRVSMLTPQNLKVPTVGEMVDMWKKKHNTFGILYSWFLAKVASHLEIFPGSEFRVAFEEAMKYGGKVILGDRPVQITLRRTWEKMPLWHKIKLLYSFLFQAFFLPSAEDLNRMLKEMDDVDMLTLVIQEMSKAFPTLMETLVHERDQYMSSTLLKVATEHSSVVAVVGKGHLQGIKNYWKQPVPVHDLMTIPSPKPAVSALKVLSSLGVAVAGVAIISGIYINCKK
Disordered Region (DISPRO)
**RLSRLVTPINSPKSRRFFTFITTVKSQIPLRRGPTSLPLSLTKQFSPLLSTR***********************************************SDRDETNGAVPVPEETKKVLPEELPRSVVILTCDSTAEGGTCDVYLVGTAHVSKESCREVEAIIDFLKPQVVFLELCSSRVSMLTPQNLKVPTVGEMVDMWKKKHNTFGILYSWFLAKVASHLEIFPGSEFRVAFEEAMKYGGKVILGDRPVQITLRRTWEKMPLWHKIKLLYSFLFQAFFLPSAEDLNRMLKEMDDVDMLTLVIQEMSKAFPTLMETLVHERDQYMSSTLLKVATEHSSVVAVVGKGHLQGIKNYWKQPVPVHDLMTIPSPKPAVSALKVLSSLGVAVAGVAIISGIYINCKK
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiii
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNRLSRLVTPINSPKSRRFFTFITTVKSQIPLRRGPTSLPLSLTKQFSPLLSTRITSFATANDPNFPKMDPNPPESGEEFVHVDPLSESIVSLGDEVRDESSDRDETNGAVPVPEETKKVLPEELPRSVVILTCDSTAEGGTCDVYLVGTAHVSKESCREVEAIIDFLKPQVVFLELCSSRVSMLTPQNLKVPTVGEMVDMWKKKHNTFGILYSWFLAKVASHLEIFPGSEFRVAFEEAMKYGGKVILGDRPVQITLRRTWEKMPLWHKIKLLYSFLFQAFFLPSAEDLNRMLKEMDDVDMLTLVIQEMSKAFPTLMETLVHERDQYMSSTLLKVATEHSSVVAVVGKGHLQGIKNYWKQPVPVHDLMTIPSPKPAVSALKVLSSLGVAVAGVAIISGIYINCKK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	405	2.2.26 [Sep-21-2011]
Q58DF3	377	TraB domain-containing pr	yes	no	0.713	0.766	0.321	3e-24
Q99JY4	376	TraB domain-containing pr	yes	no	0.644	0.694	0.336	2e-23
Q58760	397	Uncharacterized protein M	yes	no	0.538	0.549	0.355	2e-23
Q9H4I3	376	TraB domain-containing pr	yes	no	0.634	0.683	0.332	5e-23

>sp|Q58DF3|TRABD_BOVIN TraB domain-containing protein OS=Bos taurus GN=TRABD PE=2 SV=1

 Score =  113 bits (282), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 106/330 (32%), Positives = 164/330 (49%), Gaps = 41/330 (12%)

Query: 102 SDRDETNGAVPVPEETKKVLPEELPRSVVILTCDSTAEGGTCDVYLVGTAHVSKESCREV 161
           SD D  N  + +  + ++  P  LP +V  L     AE G+  VY+VGTAH S +S R+V
Sbjct: 38  SDVDAFNLLLEMKLKRRRERPN-LPHTVTELV----AEDGS-RVYVVGTAHFSDDSKRDV 91

Query: 162 EAIIDFLKPQVVFLELCSSRVSMLTPQNLKVPTVGEMVDMWK-----KKHNTFGILYSWF 216
              I  ++P VV +ELC  RVSML      +    + + + K     +++     L    
Sbjct: 92  VKTIREVQPDVVVVELCQYRVSMLKMDERTLLREAKEISLEKLQQAIRQNGVASGLMQML 151

Query: 217 LAKVASH----LEIFPGSEFRVAFEEAMKYG-GKVILGDRPVQITLRRTWEKMPLWHKIK 271
           L KV++H    L + PG EFR AF+EA +    K  LGDRP+ +T +R    + LW K+K
Sbjct: 152 LLKVSAHITEQLGVAPGGEFREAFKEASRVPFCKFHLGDRPIPVTFKRAIAALSLWQKVK 211

Query: 272 LLYSFLFQAFFLPSAEDLNRMLKEMDDVDMLTLVIQEMSKAFPTLMETLVHERDQYMSST 331
           L +   F +  + S +D+ R  ++    D+L  ++ EM   FP L  T+V ERD Y++  
Sbjct: 212 LAWGLCFLSDPI-SKDDVERCKQK----DLLEQMMAEMVGEFPDLHRTIVSERDVYLTYM 266

Query: 332 LLKVATE---------------HSSVVAVVGKGHLQGIKNYWKQPVPVHDLMTIPSPKPA 376
           L + A                  S VV VVG GH+ GI+  W   + + ++MT+P P   
Sbjct: 267 LRQAARRLELPRASDAEPRKCVPSVVVGVVGMGHVPGIEKNWTTDLNIQEIMTVPPP--- 323

Query: 377 VSALKVLSSLGVAVAGVAIIS-GIYINCKK 405
            SA   +S L V  A + ++  G+Y   ++
Sbjct: 324 -SASGRVSRLAVKAAALGLLGYGLYWTGRR 352

Bos taurus (taxid: 9913)

>sp|Q99JY4|TRABD_MOUSE TraB domain-containing protein OS=Mus musculus GN=Trabd PE=2 SV=1

 Score =  110 bits (275), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 100/297 (33%), Positives = 149/297 (50%), Gaps = 36/297 (12%)

Query: 102 SDRDETNGAVPVPEETKKVLPEELPRSVVILTCDSTAEGGTCDVYLVGTAHVSKESCREV 161
           SD D  N  + +  + ++  P  LPR+V  L     AE G+  VY+VGTAH S +S R+V
Sbjct: 37  SDVDAFNLLLEMKLKRRRERPN-LPRTVTQLV----AEDGS-RVYVVGTAHFSDDSKRDV 90

Query: 162 EAIIDFLKPQVVFLELCSSRVSMLTPQNLKVPTVGEMVDMWK-----KKHNTFGILYSWF 216
              I  ++P VV +ELC  RVSML      +    + V + K     +++     L    
Sbjct: 91  VKTIREVQPDVVVVELCQYRVSMLKMDERTLLREAKEVSLEKLQQAVRQNGLMSGLMQML 150

Query: 217 LAKVASH----LEIFPGSEFRVAFEEAMKYG-GKVILGDRPVQITLRRTWEKMPLWHKIK 271
           L KV++H    L + PG EFR AF+EA K    K  LGDRP+ +T +R    +  W K+K
Sbjct: 151 LLKVSAHITEQLGMAPGGEFREAFKEASKVPFCKFHLGDRPIPVTFKRAIAALSFWQKVK 210

Query: 272 LLYSFLFQAFFLPSAEDLNRMLKEMDDVDMLTLVIQEMSKAFPTLMETLVHERDQYMSST 331
           L +   F +  + S +D+ R  ++    D+L  ++ EM   FP L  T+V ERD Y++  
Sbjct: 211 LAWGLCFLSDPI-SKDDVERCKQK----DLLEQMMAEMIGEFPDLHRTIVSERDVYLTYM 265

Query: 332 LLKVATE---------------HSSVVAVVGKGHLQGIKNYWKQPVPVHDLMTIPSP 373
           L + A                  S VV VVG GH+ GI+  W   + + ++MT+P P
Sbjct: 266 LRQAARRLELPRASDAEPRKCVPSVVVGVVGMGHVPGIEKNWSTDLNIQEIMTVPPP 322

Mus musculus (taxid: 10090)

>sp|Q58760|Y1365_METJA Uncharacterized protein MJ1365 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ1365 PE=4 SV=1

 Score =  110 bits (275), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 81/228 (35%), Positives = 125/228 (54%), Gaps = 10/228 (4%)

Query: 143 CDVYLVGTAHVSKESCREVEAIIDFLKPQVVFLELCSSRV-SMLTPQNLKVPTVGEMVDM 201
           CD+YL+GTAHVSK+S  EVE II  + P+ + +EL   R  S++T +  KV     + + 
Sbjct: 17  CDIYLIGTAHVSKDSIEEVEKIISSVSPEGIAVELDDRRFFSLITNEEKKVDLKKVLKEG 76

Query: 202 WKKKHNTFGILYSWFLAKVASHLEIFPGSEFRVAFEEAMKYGGKVILGDRPVQITLRRTW 261
              K   + IL +    K+     I PGSE + A E A KYG  + L DR + ITL R  
Sbjct: 77  NFLKFFIYLILANS-QKKIGESFGIKPGSEMKKAIEIASKYGLPIYLIDRDIDITLSRLM 135

Query: 262 EKMPLWHKIKLLYSFL--FQAFFLPSAEDLNRMLKEMDDVDMLTLVIQEMSKAFPTLMET 319
           ++M    K+K+ +  L   +       + LN M+K  +    L   ++E+S   PT+ E 
Sbjct: 136 DRMTFKEKMKIFWELLNSDEEDLELDDDLLNDMVKNPEKFIKL---LKEIS---PTIYEV 189

Query: 320 LVHERDQYMSSTLLKVATEHSSVVAVVGKGHLQGIKNYWKQPVPVHDL 367
           LV ERD++M+  L +++   +S+VAVVG GH++GI  Y K+    +D+
Sbjct: 190 LVDERDRFMAKRLFELSKNKNSLVAVVGAGHVEGIVRYLKKLENGNDI 237

Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (taxid: 243232)

>sp|Q9H4I3|TRABD_HUMAN TraB domain-containing protein OS=Homo sapiens GN=TRABD PE=1 SV=1

 Score =  108 bits (271), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 100/301 (33%), Positives = 150/301 (49%), Gaps = 44/301 (14%)

Query: 102 SDRDETNGAVPVPEETKKVLPEELPRSVVILTCDSTAEGGTCDVYLVGTAHVSKESCREV 161
           SD D  N  + +  + ++  P  LPR+V  L     AE G+  VY+VGTAH S +S R+V
Sbjct: 38  SDVDAFNLLLEMKLKRRRQRPN-LPRTVTQLV----AEDGS-RVYVVGTAHFSDDSKRDV 91

Query: 162 EAIIDFLKPQVVFLELCSSRVSMLT---------PQNLKVPTVGEMVDMWKKKHNTFGIL 212
              I  ++P VV +ELC  RVSML           Q L +  + + V    +++     L
Sbjct: 92  VKTIREVQPDVVVVELCQYRVSMLKMDESTLLREAQELSLEKLQQAV----RQNGLMSGL 147

Query: 213 YSWFLAKVASH----LEIFPGSEFRVAFEEAMKYG-GKVILGDRPVQITLRRTWEKMPLW 267
               L KV++H    L + PG EFR AF+EA K    K  LGDRP+ +T +R    +  W
Sbjct: 148 MQMLLLKVSAHITEQLGMAPGGEFREAFKEASKVPFCKFHLGDRPIPVTFKRAIAALSFW 207

Query: 268 HKIKLLYSFLFQAFFLPSAEDLNRMLKEMDDVDMLTLVIQEMSKAFPTLMETLVHERDQY 327
            K++L +   F +  + S +D+ R  ++    D+L  ++ EM   FP L  T+V ERD Y
Sbjct: 208 QKVRLAWGLCFLSDPI-SKDDVERCKQK----DLLEQMMAEMIGEFPDLHRTIVSERDVY 262

Query: 328 MSSTLLKVATE---------------HSSVVAVVGKGHLQGIKNYWKQPVPVHDLMTIPS 372
           ++  L + A                  S VV VVG GH+ GI+  W   + + ++MT+P 
Sbjct: 263 LTYMLRQAARRLELPRASDAEPRKCVPSVVVGVVGMGHVPGIEKNWSTDLNIQEIMTVPP 322

Query: 373 P 373
           P
Sbjct: 323 P 323

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	405
449519018	415	PREDICTED: traB domain-containing protei	0.985	0.961	0.638	1e-144
449468335	415	PREDICTED: traB domain-containing protei	0.970	0.946	0.637	1e-144
356544828	403	PREDICTED: traB domain-containing protei	0.822	0.826	0.722	1e-143
224132632	343	predicted protein [Populus trichocarpa]	0.822	0.970	0.711	1e-142
225447334	433	PREDICTED: traB domain-containing protei	0.846	0.792	0.682	1e-139
356515256	344	PREDICTED: traB domain-containing protei	0.822	0.968	0.695	1e-136
224095744	290	predicted protein [Populus trichocarpa]	0.711	0.993	0.791	1e-135
255549373	368	conserved hypothetical protein [Ricinus	0.864	0.951	0.591	1e-127
30679206	371	TraB-like protein [Arabidopsis thaliana]	0.814	0.889	0.628	1e-127
297848792	372	TraB family protein [Arabidopsis lyrata	0.834	0.908	0.615	1e-127

>gi|449519018|ref|XP_004166532.1| PREDICTED: traB domain-containing protein-like [Cucumis sativus]

 Score =  517 bits (1331), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 269/421 (63%), Positives = 322/421 (76%), Gaps = 22/421 (5%)

Query: 1   MNRLSRLVTPINSPKSRRFFTFITTVKSQIPLRRGPTSLPLSLTKQFSPLLSTRITSFAT 60
           MNRL+R  T +N  +S RF   I T   +   RR   +L     + FS      I  F+ 
Sbjct: 1   MNRLTRCATQLNLTESHRF---IVTATVKPHRRRLNYALTFKPHRHFSAPFDFGIF-FSQ 56

Query: 61  AND-----PNFPK-MDPNPPESG----EEFVHV-DP----LSESIVSLGDE-VRDESSDR 104
            +D     P  P+ MDP PPES     E+FVH+ DP    L ESIVS  DE + DE++  
Sbjct: 57  NSDRPRRLPRLPQVMDPVPPESDSPAVEDFVHIEDPNIESLCESIVSTTDEQINDEAASV 116

Query: 105 DETNGAVPVPEETKKVLPEELPRSVVILTCDSTAEGGTCDVYLVGTAHVSKESCREVEAI 164
                   + E+ ++VLPEEL RSV++LTC++T EGG CDVYLVGTAHVS+ESCREV+A+
Sbjct: 117 ISPEAEEGLAEQ-RRVLPEELSRSVLVLTCETTGEGGICDVYLVGTAHVSQESCREVQAV 175

Query: 165 IDFLKPQVVFLELCSSRVSMLTPQNLKVPTVGEMVDMWKKKHNTFGILYSWFLAKVASHL 224
           I +LKPQVVFLELC+SRV++LTPQNLKVPT+GEMV+MWKKKHN FGILYSWFLAKVA+ L
Sbjct: 176 ISYLKPQVVFLELCASRVAVLTPQNLKVPTMGEMVEMWKKKHNIFGILYSWFLAKVANKL 235

Query: 225 EIFPGSEFRVAFEEAMKYGGKVILGDRPVQITLRRTWEKMPLWHKIKLLYSFLFQAFFLP 284
           E+FPGSEFRVA+EEAMKY GKVILGDRPVQIT+RR W KMPLWHKIKLLYSF+FQAFFLP
Sbjct: 236 EVFPGSEFRVAYEEAMKYRGKVILGDRPVQITIRRAWAKMPLWHKIKLLYSFVFQAFFLP 295

Query: 285 SAEDLNRMLKEMDDVDMLTLVIQEMSKAFPTLMETLVHERDQYMSSTLLKVATEHSSVVA 344
           S E+L +MLK+MDDVDMLTL+IQEMSK FPTLM+TLVHERD+YMS+TLL VA EH SVVA
Sbjct: 296 SPEELTKMLKDMDDVDMLTLIIQEMSKEFPTLMDTLVHERDRYMSTTLLGVAKEHQSVVA 355

Query: 345 VVGKGHLQGIKNYWKQPVPVHDLMTIPSPKPAVSALKVLSSLGVAVAGVAIISGIYINCK 404
           VVGKGHL GIK  W+QPV + DL+ +P P+  V  +K+ SS+GVAVAGVAIISG+Y+ CK
Sbjct: 356 VVGKGHLSGIKKNWQQPVTLEDLLEMP-PQKGVPVIKIFSSIGVAVAGVAIISGVYLACK 414

Query: 405 K 405
           K
Sbjct: 415 K 415

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449468335|ref|XP_004151877.1| PREDICTED: traB domain-containing protein-like [Cucumis sativus]

 Score =  516 bits (1329), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 272/427 (63%), Positives = 324/427 (75%), Gaps = 34/427 (7%)

Query: 1   MNRLSRLVTPINSPKSRRFFTFITTVKSQIPLRRGPTSLPLSLTKQFSPLLSTRITSFAT 60
           MNRL+R  T +N  +S RF   I T   +   RR   +L     + FS      I  F+ 
Sbjct: 1   MNRLTRCATQLNLTESHRF---IVTATVKPHRRRLNYALTFKPHRHFSAPFDFGIF-FSQ 56

Query: 61  AND-----PNFPK-MDPNPPESG----EEFVHV-DP----LSESIVSLGDE-VRDESSDR 104
            +D     P  P+ MDP PPES     E+FVH+ DP    L ESIVS  DE + DE++  
Sbjct: 57  NSDRPRRLPRLPQVMDPVPPESDSPAVEDFVHIEDPNIESLCESIVSTTDEQINDEAA-- 114

Query: 105 DETNGAVPVPE------ETKKVLPEELPRSVVILTCDSTAEGGTCDVYLVGTAHVSKESC 158
                +V  PE      E ++VLPEEL RSV++LTC++T EGG CDVYLVGTAHVS+ESC
Sbjct: 115 -----SVISPEAEEGLAEQRRVLPEELSRSVLVLTCETTGEGGICDVYLVGTAHVSQESC 169

Query: 159 REVEAIIDFLKPQVVFLELCSSRVSMLTPQNLKVPTVGEMVDMWKKKHNTFGILYSWFLA 218
           REV+A+I +LKPQVVFLELC+SRV++LTPQNLKVPT+GEMV+MWKKKHN FGILYSWFLA
Sbjct: 170 REVQAVISYLKPQVVFLELCASRVAVLTPQNLKVPTMGEMVEMWKKKHNIFGILYSWFLA 229

Query: 219 KVASHLEIFPGSEFRVAFEEAMKYGGKVILGDRPVQITLRRTWEKMPLWHKIKLLYSFLF 278
           KVA+ LE+FPGSEFRVA+EEAMKY GKVILGDRPVQIT+RR W KMPLWHKIKLLYSF+F
Sbjct: 230 KVANKLEVFPGSEFRVAYEEAMKYRGKVILGDRPVQITIRRAWAKMPLWHKIKLLYSFVF 289

Query: 279 QAFFLPSAEDLNRMLKEMDDVDMLTLVIQEMSKAFPTLMETLVHERDQYMSSTLLKVATE 338
           QAFFLPS E+L +MLK+MDDVDMLTL+IQEMSK FPTLM+TLVHERD+YMS+TLL VA E
Sbjct: 290 QAFFLPSPEELTKMLKDMDDVDMLTLIIQEMSKEFPTLMDTLVHERDRYMSTTLLGVAKE 349

Query: 339 HSSVVAVVGKGHLQGIKNYWKQPVPVHDLMTIPSPKPAVSALKVLSSLGVAVAGVAIISG 398
           H SVVAVVGKGHL GIK  W+QPV + DL+ +P+ K  V  +K+ SS+GVAVAGVAIISG
Sbjct: 350 HQSVVAVVGKGHLSGIKKNWQQPVTLEDLLEMPTQK-GVPVVKIFSSIGVAVAGVAIISG 408

Query: 399 IYINCKK 405
           +Y+ CKK
Sbjct: 409 VYLACKK 415

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356544828|ref|XP_003540849.1| PREDICTED: traB domain-containing protein-like [Glycine max]

 Score =  513 bits (1321), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 253/350 (72%), Positives = 292/350 (83%), Gaps = 17/350 (4%)

Query: 67  PKMDPNPPE------SGEEFVHV-----DPLSESIVSLGDEVRDESSDRDETNGAVPVPE 115
           P MDP PPE      S E+FVHV     + LSES+V +     DE S+ D    A P  +
Sbjct: 60  PTMDPQPPEPSAPAASAEDFVHVTDLKMESLSESMVRI-----DEPSEADAAPSA-PDSD 113

Query: 116 ETKKVLPEELPRSVVILTCDSTAEGGTCDVYLVGTAHVSKESCREVEAIIDFLKPQVVFL 175
                L  EL R+V++L+C+S AEGG CDVYLVGTAHVS+ES REV+AI++FLKPQVVFL
Sbjct: 114 RRPATLSPELSRNVLVLSCESAAEGGVCDVYLVGTAHVSEESSREVQAIVNFLKPQVVFL 173

Query: 176 ELCSSRVSMLTPQNLKVPTVGEMVDMWKKKHNTFGILYSWFLAKVASHLEIFPGSEFRVA 235
           ELCSSRV++LT QNLKVPT+GEMV M KKKHN F +LY WFLAK+AS LE+FPGSEFRVA
Sbjct: 174 ELCSSRVAVLTLQNLKVPTMGEMVTMLKKKHNMFEVLYGWFLAKIASKLEVFPGSEFRVA 233

Query: 236 FEEAMKYGGKVILGDRPVQITLRRTWEKMPLWHKIKLLYSFLFQAFFLPSAEDLNRMLKE 295
           +EEA+KYGG+VILGDRPVQITLRRTW KMPLWHK KLLYS LFQA FLPS++DLN+MLKE
Sbjct: 234 YEEAIKYGGRVILGDRPVQITLRRTWSKMPLWHKTKLLYSLLFQAVFLPSSDDLNKMLKE 293

Query: 296 MDDVDMLTLVIQEMSKAFPTLMETLVHERDQYMSSTLLKVATEHSSVVAVVGKGHLQGIK 355
           MDD DMLTLVIQEMSK FPTLMETLVHERDQYMSSTLLKVA+E+SSVVAVVGKGHLQGIK
Sbjct: 294 MDDSDMLTLVIQEMSKEFPTLMETLVHERDQYMSSTLLKVASENSSVVAVVGKGHLQGIK 353

Query: 356 NYWKQPVPVHDLMTIPSPKPAVSALKVLSSLGVAVAGVAIISGIYINCKK 405
            +WKQPV + DLMT+PSPKPAVSA ++++S+GVAVAGVAIISGIY++CKK
Sbjct: 354 KHWKQPVVMKDLMTVPSPKPAVSATRIVTSIGVAVAGVAIISGIYLSCKK 403

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224132632|ref|XP_002327843.1| predicted protein [Populus trichocarpa] gi|222837252|gb|EEE75631.1| predicted protein [Populus trichocarpa]

 Score =  511 bits (1316), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 249/350 (71%), Positives = 290/350 (82%), Gaps = 17/350 (4%)

Query: 63  DPNFPKMDPNPPESGEEFVHVDP-------LSESIVSLGDEVRDESSDRDETNGAVPVPE 115
           DPN   MDPNP  S EEFVH++        LSESIV + +E+ ++ +  D+         
Sbjct: 4   DPNPSTMDPNP--SNEEFVHIENPSDNDNHLSESIVDVANELSEDDNKNDDVV------- 54

Query: 116 ETKKVLPEELPRSVVILTCDSTAEGGTCDVYLVGTAHVSKESCREVEAIIDFLKPQVVFL 175
             +K LPEEL RSV++LTC+S AEGGTC V+LVGTAHV +ESCREV+A+I +LKPQVVFL
Sbjct: 55  -ERKELPEELSRSVMVLTCESKAEGGTCVVHLVGTAHVCQESCREVQAVISYLKPQVVFL 113

Query: 176 ELCSSRVSMLTPQNLKVPTVGEMVDMWKKKHNTFGILYSWFLAKVASHLEIFPGSEFRVA 235
           ELC+SRV+ML+PQNLKVPT+GEM+ MWKK HNTFGILYSWFLAKVA  LE+FPGSEFRVA
Sbjct: 114 ELCASRVAMLSPQNLKVPTMGEMIKMWKKNHNTFGILYSWFLAKVADKLEVFPGSEFRVA 173

Query: 236 FEEAMKYGGKVILGDRPVQITLRRTWEKMPLWHKIKLLYSFLFQAFFLPSAEDLNRMLKE 295
           FEEA KY GKV+LGDRPVQITLRRTW KMP+WHK+K LYS LFQA FLPS+EDL +MLKE
Sbjct: 174 FEEARKYEGKVVLGDRPVQITLRRTWGKMPVWHKVKFLYSLLFQALFLPSSEDLEKMLKE 233

Query: 296 MDDVDMLTLVIQEMSKAFPTLMETLVHERDQYMSSTLLKVATEHSSVVAVVGKGHLQGIK 355
           MDDVDMLTLVIQEMSK FPTLMETLV ERDQYMSSTLL++A EH+SVVAVVGKGHLQGIK
Sbjct: 234 MDDVDMLTLVIQEMSKQFPTLMETLVQERDQYMSSTLLRIAKEHNSVVAVVGKGHLQGIK 293

Query: 356 NYWKQPVPVHDLMTIPSPKPAVSALKVLSSLGVAVAGVAIISGIYINCKK 405
            +W+Q + + DLM +PS K AVSA KVL+SLGVAVAGVAI+SGIY++ KK
Sbjct: 294 RHWEQHIELKDLMELPSQKSAVSAWKVLASLGVAVAGVAIVSGIYLSRKK 343

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225447334|ref|XP_002280408.1| PREDICTED: traB domain-containing protein isoform 1 [Vitis vinifera] gi|297739309|emb|CBI28960.3| unnamed protein product [Vitis vinifera]

 Score =  500 bits (1288), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 245/359 (68%), Positives = 289/359 (80%), Gaps = 16/359 (4%)

Query: 48  SPLLSTRITSFATANDPNF-PKMDPNPPESGEEFVHVDPLSESIVSLGDEVRDESSDRDE 106
           SP L+T    F   ++P+  P  +PN   S E+FV VD     + SL  E   E SDR+ 
Sbjct: 90  SPGLNTASEDFVHVDNPDLDPIPNPNIETSPEDFVSVDDRQHDVASLNAEA--EGSDRN- 146

Query: 107 TNGAVPVPEETKKVLPEELPRSVVILTCDSTAEGGTCDVYLVGTAHVSKESCREVEAIID 166
                       +VLPEEL RSVV+L+C+S+AEGGTCDVYLVGTAHVS+ESCREV+A+I 
Sbjct: 147 ------------RVLPEELSRSVVMLSCESSAEGGTCDVYLVGTAHVSQESCREVQAVIS 194

Query: 167 FLKPQVVFLELCSSRVSMLTPQNLKVPTVGEMVDMWKKKHNTFGILYSWFLAKVASHLEI 226
           +LKP+ VFLELCSSRV++LTPQ+LKVPT+ EM+DMWKK HN  GILYSWFLAKVA+ LE+
Sbjct: 195 YLKPEAVFLELCSSRVAVLTPQSLKVPTMSEMIDMWKKNHNLLGILYSWFLAKVANRLEV 254

Query: 227 FPGSEFRVAFEEAMKYGGKVILGDRPVQITLRRTWEKMPLWHKIKLLYSFLFQAFFLPSA 286
           FPG+EFRVA+EEAMKYGGKV+LGDRP+ ITLRRTW KMPLWHK KLLY+  FQAFFLPS 
Sbjct: 255 FPGAEFRVAYEEAMKYGGKVMLGDRPINITLRRTWGKMPLWHKAKLLYTITFQAFFLPSQ 314

Query: 287 EDLNRMLKEMDDVDMLTLVIQEMSKAFPTLMETLVHERDQYMSSTLLKVATEHSSVVAVV 346
           EDLN+M+KEMD+VDMLTLVIQEMSK FPTLMETLVHERDQ+MSSTLL+VA +HSSVVAVV
Sbjct: 315 EDLNKMMKEMDNVDMLTLVIQEMSKEFPTLMETLVHERDQFMSSTLLRVAAKHSSVVAVV 374

Query: 347 GKGHLQGIKNYWKQPVPVHDLMTIPSPKPAVSALKVLSSLGVAVAGVAIISGIYINCKK 405
           GKGHLQGIK  W+QP+ +  L+  PS  PAVSA+K+L+SLG AVAGVAIISGIY+  KK
Sbjct: 375 GKGHLQGIKKNWQQPIQITSLLEPPSHSPAVSAVKILTSLGAAVAGVAIISGIYLAVKK 433

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356515256|ref|XP_003526317.1| PREDICTED: traB domain-containing protein-like [Glycine max]

 Score =  491 bits (1264), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 242/348 (69%), Positives = 284/348 (81%), Gaps = 15/348 (4%)

Query: 69  MDPNPPESG------EEFVHV-----DPLSESIVSLGDEVRDESSDRDETNGAVPVPEET 117
           MD  PPES       E+FVHV     + LSESIV + +    +++       +   P   
Sbjct: 1   MDAQPPESAAPAASTEDFVHVADLKMESLSESIVRIDEPSEADAAASSAPAESDRRP--- 57

Query: 118 KKVLPEELPRSVVILTCDSTAEGGTCDVYLVGTAHVSKESCREVEAIIDFLKPQVVFLEL 177
              LP EL R+V +L+C+S+AEGG CDVYLVGTAHVS+ES REV+AI++FLKPQVVFLEL
Sbjct: 58  -ATLPPELSRNVRVLSCESSAEGGVCDVYLVGTAHVSEESSREVQAIVNFLKPQVVFLEL 116

Query: 178 CSSRVSMLTPQNLKVPTVGEMVDMWKKKHNTFGILYSWFLAKVASHLEIFPGSEFRVAFE 237
           CSSRV++LT QNLKVPT+GEMV M KKKHN F +LY WFLAK+AS LE+FPGSEFRVA+E
Sbjct: 117 CSSRVAVLTLQNLKVPTMGEMVTMLKKKHNMFEVLYGWFLAKIASKLEVFPGSEFRVAYE 176

Query: 238 EAMKYGGKVILGDRPVQITLRRTWEKMPLWHKIKLLYSFLFQAFFLPSAEDLNRMLKEMD 297
           EA+KYGG+VILGDRPVQITLRRTW KMPLWHK K LYS LFQA FL +A+DLN+ML EMD
Sbjct: 177 EAIKYGGRVILGDRPVQITLRRTWSKMPLWHKTKFLYSLLFQAVFLSNADDLNKMLNEMD 236

Query: 298 DVDMLTLVIQEMSKAFPTLMETLVHERDQYMSSTLLKVATEHSSVVAVVGKGHLQGIKNY 357
           D DMLTLVIQEMSK FPTLMETLVHERDQYMSSTLLKVA+E+SSVVAVVGKGHLQGIK +
Sbjct: 237 DSDMLTLVIQEMSKEFPTLMETLVHERDQYMSSTLLKVASENSSVVAVVGKGHLQGIKKH 296

Query: 358 WKQPVPVHDLMTIPSPKPAVSALKVLSSLGVAVAGVAIISGIYINCKK 405
           WKQPV + DLMT+PSPKP VSA ++++S+G AVAGV+IISGIY++CKK
Sbjct: 297 WKQPVVMKDLMTVPSPKPVVSATRIVTSVGAAVAGVSIISGIYLSCKK 344

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224095744|ref|XP_002310462.1| predicted protein [Populus trichocarpa] gi|222853365|gb|EEE90912.1| predicted protein [Populus trichocarpa]

 Score =  488 bits (1257), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 228/288 (79%), Positives = 262/288 (90%)

Query: 118 KKVLPEELPRSVVILTCDSTAEGGTCDVYLVGTAHVSKESCREVEAIIDFLKPQVVFLEL 177
           +K LPEEL RSV++LTC+S AEGGTC V+LVGTAHVS+ESCREV+A++ +LKPQVVFLEL
Sbjct: 3   RKELPEELSRSVMVLTCESKAEGGTCVVHLVGTAHVSQESCREVQAVVSYLKPQVVFLEL 62

Query: 178 CSSRVSMLTPQNLKVPTVGEMVDMWKKKHNTFGILYSWFLAKVASHLEIFPGSEFRVAFE 237
           C+SRV++LTPQNLKVPT+GEM++MWKK HN FGILYSWFLAKV+  LE+FPGSEFRVAFE
Sbjct: 63  CASRVAVLTPQNLKVPTMGEMIEMWKKNHNAFGILYSWFLAKVSDKLEVFPGSEFRVAFE 122

Query: 238 EAMKYGGKVILGDRPVQITLRRTWEKMPLWHKIKLLYSFLFQAFFLPSAEDLNRMLKEMD 297
           EA KY GKV+LGDRPVQITL+RTW KMPLWHK+KLLYS LFQA FLPS+EDL++MLKEMD
Sbjct: 123 EARKYEGKVVLGDRPVQITLQRTWGKMPLWHKVKLLYSLLFQALFLPSSEDLDKMLKEMD 182

Query: 298 DVDMLTLVIQEMSKAFPTLMETLVHERDQYMSSTLLKVATEHSSVVAVVGKGHLQGIKNY 357
           DVDMLTLVIQEMSK FPTLM+TLVHERDQYMSSTLL++A EH+SVVAVVGKGHLQGIK +
Sbjct: 183 DVDMLTLVIQEMSKQFPTLMDTLVHERDQYMSSTLLRIAKEHTSVVAVVGKGHLQGIKKH 242

Query: 358 WKQPVPVHDLMTIPSPKPAVSALKVLSSLGVAVAGVAIISGIYINCKK 405
           W QP  + DLM IPS KPAVSA KVL+SLGVAVAGVAI+SG Y++ KK
Sbjct: 243 WGQPFEMKDLMEIPSQKPAVSARKVLASLGVAVAGVAIVSGFYLSRKK 290

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255549373|ref|XP_002515740.1| conserved hypothetical protein [Ricinus communis] gi|223545177|gb|EEF46687.1| conserved hypothetical protein [Ricinus communis]

 Score =  461 bits (1185), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 250/423 (59%), Positives = 292/423 (69%), Gaps = 73/423 (17%)

Query: 1   MNRLSRLVTPINSPKSRRFFTFITTVKSQIPLRRGPTSLPLSLTKQFSPLLSTRITSFAT 60
           MNR +RL++ + SP S RFFTF            G  +L  +   Q SP    +I SFAT
Sbjct: 1   MNRSTRLLSQVYSPDSHRFFTF-----------GGHKTLAFTPRVQISPPKFRKIISFAT 49

Query: 61  AN---DPNFPKMDPNPPES-------GEEFVHVD--------PLSESIVSLGDEVRDESS 102
                + N P MDPN PES        E+F+HV+         LSESIV + +E+R+E++
Sbjct: 50  KTGNLNTNIPAMDPNRPESSEPHGSANEDFIHVENPNLYVEEALSESIVDVDNELREENA 109

Query: 103 DRDETNGAVPVPEETKKVLPEELPRSVVILTCDSTAEGGTCDVYLVGTAHVSKESCREVE 162
           +     G+   PE  +K LPEEL RSVV LTC+S AEGG CDVYLVGTAHVS+ESC EV 
Sbjct: 110 N----TGSDSEPE--RKELPEELSRSVVKLTCESAAEGGLCDVYLVGTAHVSQESCEEVR 163

Query: 163 AIIDFLKPQVVFLELCSSRVSMLTPQNLKVPTVGEMVDMWKKKHNTFGILYSWFLAKVAS 222
           AII +LKP+VVFLELC+ R+++LTPQNLKVPT+GEM++MWKK  N FGILYSWFLAKVA 
Sbjct: 164 AIIRYLKPEVVFLELCTRRLAVLTPQNLKVPTMGEMIEMWKKNQNMFGILYSWFLAKVAD 223

Query: 223 HLEIFPGSEFRVAFEEAMKYGGKVILGDRPVQITLRRTWEKMPLWHKIKLLYSFLFQAFF 282
            LE+FPGSEFRV FEEA  YGGKVILGDRPVQ                            
Sbjct: 224 KLEVFPGSEFRVGFEEARAYGGKVILGDRPVQ---------------------------- 255

Query: 283 LPSAEDLNRMLKEMDDVDMLTLVIQEMSKAFPTLMETLVHERDQYMSSTLLKVATEHSSV 342
                     LKEMD+VDMLTLVIQEMSK FPTLMETLVHERDQYMSSTLLKVA+EH+SV
Sbjct: 256 ----------LKEMDNVDMLTLVIQEMSKEFPTLMETLVHERDQYMSSTLLKVASEHTSV 305

Query: 343 VAVVGKGHLQGIKNYWKQPVPVHDLMTIPSPKPAVSALKVLSSLGVAVAGVAIISGIYIN 402
           VAVVGKGHLQGIK +W+QPVPV DL+ +PS KPA+SALKVL+SLGVAV+GVAII GIY  
Sbjct: 306 VAVVGKGHLQGIKRHWRQPVPVKDLLEMPSQKPAISALKVLTSLGVAVSGVAIIWGIYRA 365

Query: 403 CKK 405
           CKK
Sbjct: 366 CKK 368

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30679206|ref|NP_172019.3| TraB-like protein [Arabidopsis thaliana] gi|26450987|dbj|BAC42600.1| unknown protein [Arabidopsis thaliana] gi|28950927|gb|AAO63387.1| At1g05270 [Arabidopsis thaliana] gi|51969614|dbj|BAD43499.1| unknown protein [Arabidopsis thaliana] gi|332189695|gb|AEE27816.1| TraB-like protein [Arabidopsis thaliana]

 Score =  460 bits (1183), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 223/355 (62%), Positives = 281/355 (79%), Gaps = 25/355 (7%)

Query: 76  SGEEFVHVD--------PLSESIVSLGDEVRDESSDRDETNGAVPV-------------- 113
           SGE+FVH+D         LS+SIV++  +   + +  +E  G+  V              
Sbjct: 17  SGEDFVHIDDPRPTGDISLSDSIVNVEKDELLDEAAEEEFRGSDSVFSGGDGGGADDDGG 76

Query: 114 ---PEETKKVLPEELPRSVVILTCDSTAEGGTCDVYLVGTAHVSKESCREVEAIIDFLKP 170
               E TK  LPEEL +SVVILTC+STA+GG+CDVYLVGTAHVSK+SC EVEAII  LKP
Sbjct: 77  ECSSEATKVELPEELAKSVVILTCESTADGGSCDVYLVGTAHVSKQSCLEVEAIISILKP 136

Query: 171 QVVFLELCSSRVSMLTPQNLKVPTVGEMVDMWKKKHNTFGILYSWFLAKVASHLEIFPGS 230
           +VVF+ELCSSR+S+L PQ LK+PT+ +M++ WK+K NTFGILY WFLAK+ASHLE+FPG+
Sbjct: 137 EVVFVELCSSRLSVLKPQTLKIPTMSDMIESWKQKQNTFGILYGWFLAKIASHLEVFPGA 196

Query: 231 EFRVAFEEAMKYGGKVILGDRPVQITLRRTWEKMPLWHKIKLLYSFLFQAFFLPSAEDLN 290
           EFRVA+EEA+KYGGKVILGDRPVQITL+RTW KMPLWHK+K LYS LFQA FLP AE+L 
Sbjct: 197 EFRVAYEEAIKYGGKVILGDRPVQITLKRTWAKMPLWHKVKFLYSILFQAVFLPGAEELE 256

Query: 291 RMLKEMDDVDMLTLVIQEMSKAFPTLMETLVHERDQYMSSTLLKVATEHSSVVAVVGKGH 350
           +MLK+MD+VDM+TLVIQEMSK FPTLM+T+VHERDQYM+S+LL+VA++HSSVVAV+GKGH
Sbjct: 257 KMLKDMDNVDMVTLVIQEMSKEFPTLMDTIVHERDQYMASSLLRVASDHSSVVAVIGKGH 316

Query: 351 LQGIKNYWKQPVPVHDLMTIPSPKPAVSALKVLSSLGVAVAGVAIISGIYINCKK 405
           + GIK  WKQP+ ++DLM IPS K   +  +++SS+ VAVAG AI+SGI ++ +K
Sbjct: 317 INGIKKNWKQPITMNDLMEIPSDKSVFTLKRIISSVAVAVAGTAIVSGILLSRRK 371

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297848792|ref|XP_002892277.1| TraB family protein [Arabidopsis lyrata subsp. lyrata] gi|297338119|gb|EFH68536.1| TraB family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  459 bits (1182), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 224/364 (61%), Positives = 281/364 (77%), Gaps = 26/364 (7%)

Query: 67  PKMDPNPPESGEEFVHVD--------PLSESIVSL----------------GDEVRDESS 102
           P  +P+   SGE+FVH+D         LS+SIV++                 D V     
Sbjct: 10  PSSEPDV-HSGEDFVHIDDPRPTGDISLSDSIVNVDKDELLDEAAEEEFRGSDSVFSGGD 68

Query: 103 DRDETNGAVPVPEETKKV-LPEELPRSVVILTCDSTAEGGTCDVYLVGTAHVSKESCREV 161
                +       ET KV LPE+L +SVVILTC+STA+GG+CDVYLVGTAHVSK+SC EV
Sbjct: 69  GGGADDDGGECSSETIKVELPEDLAKSVVILTCESTADGGSCDVYLVGTAHVSKQSCLEV 128

Query: 162 EAIIDFLKPQVVFLELCSSRVSMLTPQNLKVPTVGEMVDMWKKKHNTFGILYSWFLAKVA 221
           EAII  LKP+VVF+ELCSSR+S+L PQ LK+PT+ +M++ WK+K NTFGILY WFLAK+A
Sbjct: 129 EAIISILKPEVVFVELCSSRLSVLKPQTLKIPTMSDMIESWKQKQNTFGILYGWFLAKIA 188

Query: 222 SHLEIFPGSEFRVAFEEAMKYGGKVILGDRPVQITLRRTWEKMPLWHKIKLLYSFLFQAF 281
           SHLE+FPG+EFRVA+EEA+KYGGKVILGDRPVQITL+RTW KMPLWHK+K LYS LFQA 
Sbjct: 189 SHLEVFPGAEFRVAYEEAIKYGGKVILGDRPVQITLKRTWAKMPLWHKVKFLYSILFQAV 248

Query: 282 FLPSAEDLNRMLKEMDDVDMLTLVIQEMSKAFPTLMETLVHERDQYMSSTLLKVATEHSS 341
           FLPSAE+L +MLK+MD+VDM+TLVIQEMSK FPTLM+T+VHERDQYM+S+LL+VA+EHSS
Sbjct: 249 FLPSAEELEKMLKDMDNVDMVTLVIQEMSKEFPTLMDTIVHERDQYMASSLLRVASEHSS 308

Query: 342 VVAVVGKGHLQGIKNYWKQPVPVHDLMTIPSPKPAVSALKVLSSLGVAVAGVAIISGIYI 401
           VVAV+GKGH+ GIK  WKQP+ ++DLM IPS K   +  +++SS+ +AVAG AI+SGI +
Sbjct: 309 VVAVIGKGHINGIKKNWKQPITMNDLMEIPSDKSVFTIKRIISSVAIAVAGTAIVSGILL 368

Query: 402 NCKK 405
             ++
Sbjct: 369 ARRR 372

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	405
TAIR|locus:2207205	371	AT1G05270 "AT1G05270" [Arabido	0.718	0.784	0.714	8.5e-119
TAIR|locus:2062581	360	AT2G32340 "AT2G32340" [Arabido	0.708	0.797	0.641	1.3e-98
ZFIN|ZDB-GENE-030131-1301	360	trabd "TraB domain containing"	0.592	0.666	0.351	1.3e-29
MGI|MGI:1915226	376	Trabd "TraB domain containing"	0.498	0.537	0.360	2.1e-22
TAIR|locus:2173073	402	AT5G52030 "AT5G52030" [Arabido	0.387	0.390	0.309	2.2e-13
DICTYBASE|DDB_G0293922	381	DDB_G0293922 [Dictyostelium di	0.244	0.259	0.285	8.2e-13

TAIR|locus:2207205 AT1G05270 "AT1G05270" [Arabidopsis thaliana (taxid:3702)]

 Score = 1139 (406.0 bits), Expect = 8.5e-119, Sum P(2) = 8.5e-119
 Identities = 208/291 (71%), Positives = 256/291 (87%)

Query:   115 EETKKVLPEELPRSVVILTCDSTAEGGTCDVYLVGTAHVSKESCREVEAIIDFLKPQVVF 174
             E TK  LPEEL +SVVILTC+STA+GG+CDVYLVGTAHVSK+SC EVEAII  LKP+VVF
Sbjct:    81 EATKVELPEELAKSVVILTCESTADGGSCDVYLVGTAHVSKQSCLEVEAIISILKPEVVF 140

Query:   175 LELCSSRVSMLTPQNLKVPTVGEMVDMWKKKHNTFGILYSWFLAKVASHLEIFPGSEFRV 234
             +ELCSSR+S+L PQ LK+PT+ +M++ WK+K NTFGILY WFLAK+ASHLE+FPG+EFRV
Sbjct:   141 VELCSSRLSVLKPQTLKIPTMSDMIESWKQKQNTFGILYGWFLAKIASHLEVFPGAEFRV 200

Query:   235 AFEEAMKYGGKVILGDRPVQITLRRTWEKMPLWHKIKLLYSFLFQAFFLPSAEDLNRMLK 294
             A+EEA+KYGGKVILGDRPVQITL+RTW KMPLWHK+K LYS LFQA FLP AE+L +MLK
Sbjct:   201 AYEEAIKYGGKVILGDRPVQITLKRTWAKMPLWHKVKFLYSILFQAVFLPGAEELEKMLK 260

Query:   295 EMDDVDMLTLVIQEMSKAFPTLMETLVHERDQYMSSTLLKVATEHSSVVAVVGKGHLQGI 354
             +MD+VDM+TLVIQEMSK FPTLM+T+VHERDQYM+S+LL+VA++HSSVVAV+GKGH+ GI
Sbjct:   261 DMDNVDMVTLVIQEMSKEFPTLMDTIVHERDQYMASSLLRVASDHSSVVAVIGKGHINGI 320

Query:   355 KNYWKQPVPVHDLMTIPSPKPAVSALKVLSSLGVAVAGVAIISGIYINCKK 405
             K  WKQP+ ++DLM IPS K   +  +++SS+ VAVAG AI+SGI ++ +K
Sbjct:   321 KKNWKQPITMNDLMEIPSDKSVFTLKRIISSVAVAVAGTAIVSGILLSRRK 371

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0031307 "integral to mitochondrial outer membrane" evidence=IDA

TAIR|locus:2062581 AT2G32340 "AT2G32340" [Arabidopsis thaliana (taxid:3702)]

 Score = 979 (349.7 bits), Expect = 1.3e-98, P = 1.3e-98
 Identities = 188/293 (64%), Positives = 233/293 (79%)

Query:   115 EETKKV-LPEELPRSVVILTCDSTAEGGTCDVYLVGTAHVSKESCREVEAIIDFLKPQVV 173
             E T+K+ LPEE  +SV++LTC+STAEGG+CDVYLVGTAHVS+ESCREVEA+I  LKPQ V
Sbjct:    66 ETTEKLELPEEFAKSVMVLTCESTAEGGSCDVYLVGTAHVSQESCREVEAVISALKPQAV 125

Query:   174 FLELCSSRVSMLTPQNLKV-----PTVGEMVDMWKKKHNTFGILYSWFLAKVASHLEIFP 228
             FLELCSSR+S+LTPQ +KV     PT  EM+ MWKKKHN F I+Y + LAK A  LE+FP
Sbjct:   126 FLELCSSRLSILTPQTVKVCCQEPPTWMEMIYMWKKKHNLFEIVYGYILAKAAKKLEVFP 185

Query:   229 GSEFRVAFEEAMKYGGKVILGDRPVQITLRRTWEKMPLWHKIKLLYSFLFQAFFLPSAED 288
             G+EFRV FEEA KYGG+V LGDR VQITL+RTW KMPLWHKIKL+YS + QA FLP+ ++
Sbjct:   186 GAEFRVGFEEANKYGGRVFLGDRSVQITLQRTWGKMPLWHKIKLVYSIVSQAVFLPNPKE 245

Query:   289 LNRMLKEMDDVDMLTLVIQEMSKAFPTLMETLVHERDQYMSSTLLKVATEHSSVVAVVGK 348
             L +MLK++ D DMLTL IQEMS  FPTLMETLVHERD+YM+  LL++A+EHSSVVAVVG+
Sbjct:   246 LEKMLKDLGDGDMLTLAIQEMSTEFPTLMETLVHERDKYMAYQLLRIASEHSSVVAVVGR 305

Query:   349 GHLQGIKNYWKQPVPVHDLMTIPSPKPAVSALKVLSSLGVAVAGVAIISGIYI 401
             GHLQGIK  W Q + + +LM +P+ +   +   +L  + V V G AI+SG+Y+
Sbjct:   306 GHLQGIKKNWNQTINIKELMELPTNESIFTVKNILKYMVVVVVGTAIVSGMYL 358

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-030131-1301 trabd "TraB domain containing" [Danio rerio (taxid:7955)]

 Score = 328 (120.5 bits), Expect = 1.3e-29, P = 1.3e-29
 Identities = 95/270 (35%), Positives = 141/270 (52%)

Query:   124 ELPRSVVILTCDSTAEGGTCDVYLVGTAHVSKESCREVEAIIDFLKPQVVFLELCSSRVS 183
             +LP +V  LT   T EG    VYLVGTAH S  S ++V   I  ++P VV +ELC  RVS
Sbjct:    49 DLPETVTRLT---TPEGSV--VYLVGTAHFSDSSKKDVATTIRAVQPDVVVVELCQYRVS 103

Query:   184 MLTPQNLKVPTVGEMVDMWK-----KKHNTFGILYSWFLAKVASH----LEIFPGSEFRV 234
             ML      +    + +++ K     K++     L    L KV++H    L + PG EFR 
Sbjct:   104 MLKMDEKTLLKEAKDINLEKVQQAIKQNGVMSGLMQILLLKVSAHITEQLGMAPGGEFRE 163

Query:   235 AFEEAMKYGG-KVILGDRPVQITLRRTWEKMPLWHKIKLLYSFLFQAFFLPSAEDLNRML 293
             AF+EA K    K  LGDRP+ +T +R    + LW K +L +   F +  + S ED+ +  
Sbjct:   164 AFKEAGKVPFCKFHLGDRPIPVTFKRAIAALSLWQKARLAWGLCFLSDPI-SKEDVEKCK 222

Query:   294 KEMDDVDMLTLVIQEMSKAFPTLMETLVHERDQYMSSTLLKVA--------TEH--SSVV 343
             ++    D+L   + EM   FP L  T+V ERD Y++ TL + A         E   + VV
Sbjct:   223 QK----DLLEQTMSEMIGEFPALHRTIVAERDIYLTHTLRQAARCVEAPPTAEKVPAVVV 278

Query:   344 AVVGKGHLQGIKNYWKQPVPVHDLMTIPSP 373
              VVG GH+ GI+  W + + +H++M++  P
Sbjct:   279 GVVGMGHVSGIERNWDKELNIHEIMSVAPP 308

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

MGI|MGI:1915226 Trabd "TraB domain containing" [Mus musculus (taxid:10090)]

 Score = 269 (99.8 bits), Expect = 2.1e-22, P = 2.1e-22
 Identities = 80/222 (36%), Positives = 117/222 (52%)

Query:   125 LPRSVVILTCDSTAEGGTCDVYLVGTAHVSKESCREVEAIIDFLKPQVVFLELCSSRVSM 184
             LPR+V  L     AE G+  VY+VGTAH S +S R+V   I  ++P VV +ELC  RVSM
Sbjct:    59 LPRTVTQLV----AEDGS-RVYVVGTAHFSDDSKRDVVKTIREVQPDVVVVELCQYRVSM 113

Query:   185 LTPQNLKVPTVGEMVDMWK-----KKHNTFGILYSWFLAKVASH----LEIFPGSEFRVA 235
             L      +    + V + K     +++     L    L KV++H    L + PG EFR A
Sbjct:   114 LKMDERTLLREAKEVSLEKLQQAVRQNGLMSGLMQMLLLKVSAHITEQLGMAPGGEFREA 173

Query:   236 FEEAMKYGG-KVILGDRPVQITLRRTWEKMPLWHKIKLLYSFLFQAFFLPSAEDLNRMLK 294
             F+EA K    K  LGDRP+ +T +R    +  W K+KL +   F +  + S +D+ R  +
Sbjct:   174 FKEASKVPFCKFHLGDRPIPVTFKRAIAALSFWQKVKLAWGLCFLSDPI-SKDDVERCKQ 232

Query:   295 EMDDVDMLTLVIQEMSKAFPTLMETLVHERDQYMSSTLLKVA 336
             +    D+L  ++ EM   FP L  T+V ERD Y++  L + A
Sbjct:   233 K----DLLEQMMAEMIGEFPDLHRTIVSERDVYLTYMLRQAA 270

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2173073 AT5G52030 "AT5G52030" [Arabidopsis thaliana (taxid:3702)]

 Score = 200 (75.5 bits), Expect = 2.2e-13, P = 2.2e-13
 Identities = 51/165 (30%), Positives = 92/165 (55%)

Query:   195 VGEMVDMWKKKHNTFGILYSWFLAKVASHLEIFPGSEFRVAFEEAMKYGGKVILGDRPVQ 254
             VG  +D+  +      +L + F +K++S  +   G EFR A + + + G +++LGDRP++
Sbjct:   174 VGRSLDLGGQTALALRLLLAVFSSKLSSVADRPFGDEFRAARKASEEVGAQLVLGDRPIE 233

Query:   255 ITLRRTWEKMPLWHKIKLLYSFLFQAFFLPSAEDLNRM-LKEMD-DVDMLTLVIQE-MSK 311
             ITL+R W  +    K  L+ +       + S+  ++   LKE + D +  +L + E +S 
Sbjct:   234 ITLQRAWNSLKWGEKFNLVMAV---TRVITSSSGISAAELKEQETDENSGSLQLYERLSF 290

Query:   312 AFPTLMETLVHERDQYMSSTLL--KVATEHSSVVAVVGKGHLQGI 354
             ++P L+  L+HERD Y++ +L   K      +VV V+GKGH+ G+
Sbjct:   291 SYPALLMPLIHERDTYLAWSLKRSKAVNGCKTVVGVIGKGHMNGV 335

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

DICTYBASE|DDB_G0293922 DDB_G0293922 [Dictyostelium discoideum (taxid:44689)]

 Score = 121 (47.7 bits), Expect = 8.2e-13, Sum P(2) = 8.2e-13
 Identities = 32/112 (28%), Positives = 57/112 (50%)

Query:   116 ETKKVLPEELPRSVVILTCDSTAEGGTCDVYLVGTAHVSKESCREVEAIIDFLKPQVVFL 175
             E  K + E +  S  I+      +  T  VYL+GT HVS++SC +++ ++  ++P  +F+
Sbjct:    26 EILKRIKENIKDSEKIINVVINEKTNTV-VYLIGTIHVSQQSCEDIKTLLSIVEPDTIFI 84

Query:   176 ELCSSRVSMLTPQNLKVPTVGEMVDMWKKKHNTFGILYSWFLAKVAS-HLEI 226
             EL + R  +LT       T  +++    KK N      +WF  K++  +L I
Sbjct:    85 ELSNERAPLLTS------TEDQIISQLLKKPNI-----NWFTTKLSDFYLSI 125

GO:0044351 "macropinocytosis" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.64.112.1 hypothetical protein (343 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	405
COG1916	388	COG1916, COG1916, Uncharacterized homolog of PrgY	2e-54
TIGR00261	380	TIGR00261, traB, pheromone shutdown-related protei	7e-45
pfam01963	261	pfam01963, TraB, TraB family	2e-29

>gnl|CDD|224828 COG1916, COG1916, Uncharacterized homolog of PrgY (pheromone shutdown protein) [Function unknown]

 Score =  184 bits (470), Expect = 2e-54
 Identities = 92/270 (34%), Positives = 142/270 (52%), Gaps = 23/270 (8%)

Query: 143 CDVYLVGTAHVSKESCREVEAIIDFLKPQVVFLELCSSRV-SMLTPQNLKVPTVGEMVDM 201
            +VY++GTAHVSK+S  EV  II   KP  V +EL  +R+ S+L     ++     +   
Sbjct: 12  KEVYILGTAHVSKDSVEEVRRIILEEKPDAVAVELDEARLLSLLGGSREELDLAQVL--- 68

Query: 202 WKKKHNTFGILYSWFLA----KVASHLEIFPGSEFRVAFEEAMKYGGKVILGDRPVQITL 257
             K+   F +L    LA    K+   L + PGSE + A E A + G  V L DR + +TL
Sbjct: 69  --KEGKAFFLLAGLLLAYFQRKLGKELGVKPGSEMKAAIEAARELGAPVALIDRDIGVTL 126

Query: 258 RRTWEKMPLWHKIKLLYSFLFQAFFLPSAEDLNRMLKEMDDVDMLTLVIQEMSKAFPTLM 317
           RR W KMP W K+KL+ S +    F          + E+   D+L+ ++QE  +  PT+ 
Sbjct: 127 RRAWAKMPFWEKLKLISSLISGLLF---PGQSEIEIDELKQEDVLSALMQEFRRFSPTVY 183

Query: 318 ETLVHERDQYMSSTLLKVATEHSSVVAVVGKGHLQGIKNYWKQ----PVPVHDLMTIPSP 373
           + L+ ERD+YM+  LL++ +  + VVAVVG GH++GI+ Y K     P  + +L  +   
Sbjct: 184 KVLIDERDRYMARNLLEIVSILNDVVAVVGAGHVRGIERYLKNSDSAPPHLEELTEL--E 241

Query: 374 KPAVSALKVLSSLGVAVAGVAIISGIYINC 403
           K   S  KVL  + +A    A++  + + C
Sbjct: 242 KKGSSLGKVLLGILLA----ALLIFLIVIC 267

Length = 388

>gnl|CDD|129363 TIGR00261, traB, pheromone shutdown-related protein TraB

 Score =  159 bits (403), Expect = 7e-45
 Identities = 84/271 (30%), Positives = 148/271 (54%), Gaps = 23/271 (8%)

Query: 143 CDVYLVGTAHVSKESCREVEAIIDFLKPQVVFLELCSSRV-SMLTPQNLKVPTVGEMVDM 201
             +Y++GTAHVSK+S  EV  +I+ LKP  + +EL   R  S+L  +   +      +D 
Sbjct: 4   KTIYILGTAHVSKKSSEEVANLIEILKPDYIAVELDERRYHSLLNTKWRNLD-----IDK 58

Query: 202 WKKKHNTFGILYSWFLA----KVASHLEIFPGSEFRVAFEEAMKYGGKVILGDRPVQITL 257
             K+ N F ++ +  LA    K+     I PGSE + A E+A K+G  +IL DR ++ TL
Sbjct: 59  VLKQGNAFFLIINLILANFQKKLGEEQGIKPGSEMKTAIEKAKKHGIPLILIDRDIETTL 118

Query: 258 RRTWEKMPLWHKIKLLYSFLFQAFFLPSAEDLNRMLKEMDDVDMLTLVIQEMSKAFPTLM 317
           +R W  +  + K K++ S LF +      +++ ++L++    D L+ +++E+SK  P + 
Sbjct: 119 KRAWISITFFEKAKIISS-LFSSTDAKIEDEIEKLLEQ----DALSKIMKELSKISPKVK 173

Query: 318 ETLVHERDQYMSSTLLKVATEHSSVVAVVGKGHLQGIKNYWKQ-----PVPVHDLMTIPS 372
           + L+ ERD++M++ LL+     + +VAVVG GH+ GI    K+      + + +L  +  
Sbjct: 174 KVLIDERDEFMANKLLEGEGNKNIIVAVVGAGHVSGIMRTLKKLQNKNIINLEELEKV-- 231

Query: 373 PKPAVSALKVLSSL-GVAVAGVAIISGIYIN 402
            K   S  KVLS L  +++  + ++   Y+N
Sbjct: 232 KKKHFSFSKVLSYLIAISIILLFVMISFYLN 262

traB is a plasmid encoded gene that functions in the shutdown of the peptide sex pheromone cPD1 which is produced by the plasmid free recipient cell prior to conjugative transfer in Enterococcus faecalis. Once the recipient acquires the plasmid, production of cPD1 is shut down. The gene product may play another role in the other species in the family [Unknown function, General]. Length = 380

>gnl|CDD|216812 pfam01963, TraB, TraB family

 Score =  114 bits (288), Expect = 2e-29
 Identities = 63/252 (25%), Positives = 95/252 (37%), Gaps = 41/252 (16%)

Query: 138 AEGGTCDVYLVGTAHVSKESCREVEAIID--FLKPQVVFLEL------------------ 177
              G   +YL+GTAHVS  S   +   I+    +   V +EL                  
Sbjct: 5   VSKGGTTIYLLGTAHVSDPSLYPLPPAIEKALEQADAVVVELDPAALPALLLLLPKLAML 64

Query: 178 --CSSRVSMLTPQNLK----VPTVGEMVDMWKKKHNTF---GILYSWFL-AKVASHLEIF 227
               +   +L+P+             +    KK    F    +  + F  A +A  L + 
Sbjct: 65  PDGPTLDDLLSPEEWARLDEALAARGIPQALKKFKPWFLALLLALAAFQQAGLAPELGVD 124

Query: 228 PGSEFRVAFEEAMKYGGKVILGDRPVQITLRRTWEKMPLWHKIKLLYSFLFQAFFLPSAE 287
           PG E R A E     G    L DR +Q+TL R     PL  ++ LL S L +       +
Sbjct: 125 PGLEKRAAAEGKPVLG----LEDREIQLTLLRAL---PLEEQLALLRSTLDELD--KGDD 175

Query: 288 DLNRMLKEM--DDVDMLTLVIQEMSKAFPTLMETLVHERDQYMSSTLLKVATEHSSVVAV 345
            L  +++     D++ L   + E   A P L E L+ ER++Y +  +         V  V
Sbjct: 176 LLEELVEAWKEGDLEALMEELAEDMAASPELYEVLLDERNRYWAEKIEAALKSGGKVFVV 235

Query: 346 VGKGHLQGIKNY 357
           VG GHL G    
Sbjct: 236 VGAGHLPGEDGV 247

pAD1 is a hemolysin/bacteriocin plasmid originally identified in Enterococcus faecalis DS16. It encodes a mating response to a peptide sex pheromone, cAD1, secreted by recipient bacteria. Once the plasmid pAD1 is acquired, production of the pheromone ceases--a trait related in part to a determinant designated traB. However a related protein is found in C. elegans, suggesting that members of the TraB family have some more general function. This family also includes the bacterial GumN protein. The family has a conserved GXXH motif close to the N-terminus, a conserved glutamate and a conserved arginine that may be catalytic. The family also includes a second conserved GXXH motif near the C-terminus. Length = 261

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	405
TIGR00261	380	traB pheromone shutdown-related protein TraB. traB	100.0
COG1916	388	Uncharacterized homolog of PrgY (pheromone shutdow	100.0
KOG2860	359	consensus Uncharacterized conserved protein, conta	99.97
PF01963	259	TraB: TraB family; InterPro: IPR002816 In prokaryo	99.92
COG3735	299	Uncharacterized protein conserved in bacteria [Fun	99.61
PF04187	213	DUF399: Protein of unknown function, DUF399; Inter	96.08
KOG2860	359	consensus Uncharacterized conserved protein, conta	95.73

>TIGR00261 traB pheromone shutdown-related protein TraB

Probab=100.00  E-value=4.6e-56  Score=449.47  Aligned_cols=252  Identities=30%  Similarity=0.470  Sum_probs=218.9

Q ss_pred             CCceEEEEecccCChhhHHHHHHHHHhhCCCEEEEeecchhhhccCCCCCCCCchhHHHHHHHhccch---HHHHHHHHH
Q 046404          141 GTCDVYLVGTAHVSKESCREVEAIIDFLKPQVVFLELCSSRVSMLTPQNLKVPTVGEMVDMWKKKHNT---FGILYSWFL  217 (405)
Q Consensus       141 ~~~~IYLvGTaHvS~~Sa~~V~~~I~~vkPD~VvVELc~sR~~~L~~~~~~~p~~~~l~~~~k~~~~~---~~l~ls~~l  217 (405)
                      ++++||||||+|+|++|+++|+++|+++|||+||||||++|++.+..+.++.+   ++.+.+++++..   +++++++||
T Consensus         2 ~~~~i~lvGTAHvS~~S~~eV~~~I~~~~PD~VaVELd~~R~~~l~~~~~~~~---di~~vlk~g~~~~~l~~~~La~~q   78 (380)
T TIGR00261         2 HEKTIYILGTAHVSKKSSEEVANLIEILKPDYIAVELDERRYHSLLNTKWRNL---DIDKVLKQGNAFFLIINLILANFQ   78 (380)
T ss_pred             CCcEEEEEecccCCHHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHhhhhhccC---CHHHHhhcCchHHHHHHHHHHHHH
Confidence            47899999999999999999999999999999999999999998876544433   455666765532   367789999


Q ss_pred             HHHhhhcCCCChHHHHHHHHHHHHhCCeEEEcCchhHHHHHHhhhcCChHHHHHHHHHHHHHhccCCCHHHHHHHHHhcc
Q 046404          218 AKVASHLEIFPGSEFRVAFEEAMKYGGKVILGDRPVQITLRRTWEKMPLWHKIKLLYSFLFQAFFLPSAEDLNRMLKEMD  297 (405)
Q Consensus       218 ~~la~~lGv~PG~Ef~~Aie~A~e~Ga~VvLgDRdiqiTlrRl~~~Ls~~ek~kll~~ll~~~~~~p~~eeie~ll~~l~  297 (405)
                      +++++++|++||+||++|+++|++.|++|+|+|||+++|++|+|++|++|+|.|++.+++..... .+++++    ++++
T Consensus        79 ~~l~~~~gi~PG~Em~~Ai~~A~e~g~~v~LiDRdI~iTl~R~w~~~~~~eK~kl~~~l~~~~~~-~~e~~i----e~l~  153 (380)
T TIGR00261        79 KKLGEEQGIKPGSEMKTAIEKAKKHGIPLILIDRDIETTLKRAWISITFFEKAKIISSLFSSTDA-KIEDEI----EKLL  153 (380)
T ss_pred             HHHHHHcCCCCCHHHHHHHHHHHHcCCcEEEeCCCHhHHHHHHHHhCCHHHHHHHHHHHHhcccc-CCHHHH----HHhh
Confidence            99999999999999999999999999999999999999999999999999999999998875532 244444    4568


Q ss_pred             chhhHHHHHHHHHHhChhhhhhhHHhHHHHHHHHHHHhhhcCCcEEEEEcCCCchhhhhhcCCC-----CCCccccCCCC
Q 046404          298 DVDMLTLVIQEMSKAFPTLMETLVHERDQYMSSTLLKVATEHSSVVAVVGKGHLQGIKNYWKQP-----VPVHDLMTIPS  372 (405)
Q Consensus       298 ~~D~l~~l~~em~~~~P~l~~~LIdERD~yMA~~L~~l~~~~~~VVaVVGagHL~GI~~~~~~p-----~~~~~L~~lP~  372 (405)
                      +.|.++++++++++.+|.++++|++|||+|||++|.++..++++||+||||||++||+++|+++     +++++|+++|+
T Consensus       154 ~~d~L~~~~~e~~~~~P~l~~~LIdERD~ymA~~L~~l~~~~~~VvaVVGAGHl~GI~~~l~~~~~~~~~~~~~L~~~p~  233 (380)
T TIGR00261       154 EQDALSKIMKELSKISPKVKKVLIDERDEFMANKLLEGEGNKNIIVAVVGAGHVSGIMRTLKKLQNKNIINLEELEKVKK  233 (380)
T ss_pred             hhhHHHHHHHHHhhhCCchhhHHHHHHHHHHHHHHHHhhcCCCcEEEEECcchhhhHHHHHhCccccCCCChHHHhcCCC
Confidence            8999999999999999999999999999999999999877678999999999999999999975     46889999997


Q ss_pred             CCCCcchhHHHHHHHHHHHHHHHH-Hhhhhc
Q 046404          373 PKPAVSALKVLSSLGVAVAGVAII-SGIYIN  402 (405)
Q Consensus       373 ~~~~~~~~k~~~~~~~~~~~~~~~-~g~~~~  402 (405)
                      ++  .++.|+++|++++++.++++ +|||..
T Consensus       234 ~~--~~~~k~~~~~i~~~i~~~~~~~~~~~~  262 (380)
T TIGR00261       234 KH--FSFSKVLSYLIAISIILLFVMISFYLN  262 (380)
T ss_pred             CC--ccHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            65  23459999999866666777 888864

traB is a plasmid encoded gene that functions in the shutdown of the peptide sex pheromone cPD1 which is produced by the plasmid free recipient cell prior to conjugative transfer in Enterococcus faecalis. Once the recipient acquires the plasmid, production of cPD1 is shut down. The gene product may play another role in the other species in the family.

>COG1916 Uncharacterized homolog of PrgY (pheromone shutdown protein) [Function unknown]

Probab=100.00  E-value=9.1e-52  Score=408.63  Aligned_cols=252  Identities=37%  Similarity=0.580  Sum_probs=216.9

Q ss_pred             CceEEEEecccCChhhHHHHHHHHHhhCCCEEEEeecchhhhccCCCCCCCCchhHHHHHHHhccchH---HHHHHHHHH
Q 046404          142 TCDVYLVGTAHVSKESCREVEAIIDFLKPQVVFLELCSSRVSMLTPQNLKVPTVGEMVDMWKKKHNTF---GILYSWFLA  218 (405)
Q Consensus       142 ~~~IYLvGTaHvS~~Sa~~V~~~I~~vkPD~VvVELc~sR~~~L~~~~~~~p~~~~l~~~~k~~~~~~---~l~ls~~l~  218 (405)
                      .+++||+||+|+|++|.++|++.|++.+||+|+||||..|+.++..+...   ..++.+.+|+++..+   +++++++|+
T Consensus        11 ~~~v~iiGTAHVS~~SveeVrr~I~~~~PDaVAVELd~~R~~sLl~~~~~---~ldl~~vlk~Gk~~~~l~~~lLa~~Qr   87 (388)
T COG1916          11 EKEVYILGTAHVSKDSVEEVRRIILEEKPDAVAVELDEARLLSLLGGSRE---ELDLAQVLKEGKAFFLLAGLLLAYFQR   87 (388)
T ss_pred             cceEEEEeeeecCHhHHHHHHHHHHhcCCCeEEEEecHHHHHHHhcCCcc---cCCHHHHHHcCchHHHHHHHHHHHHHH
Confidence            35899999999999999999999999999999999999999988754311   234567777776442   678899999


Q ss_pred             HHhhhcCCCChHHHHHHHHHHHHhCCeEEEcCchhHHHHHHhhhcCChHHHHHHHHHHHHHhccCC--CHHHHHHHHHhc
Q 046404          219 KVASHLEIFPGSEFRVAFEEAMKYGGKVILGDRPVQITLRRTWEKMPLWHKIKLLYSFLFQAFFLP--SAEDLNRMLKEM  296 (405)
Q Consensus       219 ~la~~lGv~PG~Ef~~Aie~A~e~Ga~VvLgDRdiqiTlrRl~~~Ls~~ek~kll~~ll~~~~~~p--~~eeie~ll~~l  296 (405)
                      ++++++|++||+||++|++.|.+.|+||+|+||||++|++|+|.+|++|+|+|++++++....+ +  ++.+    ++++
T Consensus        88 klg~~~Gv~PGsEmk~AIe~A~e~ga~V~lIDRdI~vTl~R~~~~~~~~EKlK~~~~L~~~~~~-~g~~e~e----i~~l  162 (388)
T COG1916          88 KLGKELGVKPGSEMKAAIEAARELGAPVALIDRDIGVTLRRAWAKMPFWEKLKLISSLISGLLF-PGQSEIE----IDEL  162 (388)
T ss_pred             HHHHhcCCCChHHHHHHHHHHHHcCCCEEEecccHHHHHHHHHHhCCHHHHHHHHHHHHHhccc-CCCchHH----HHHH
Confidence            9999999999999999999999999999999999999999999999999999999999875333 2  2344    4457


Q ss_pred             cchhhHHHHHHHHHHhChhhhhhhHHhHHHHHHHHHHHhhhcCCcEEEEEcCCCchhhhhhcCC----CCCCccccCCCC
Q 046404          297 DDVDMLTLVIQEMSKAFPTLMETLVHERDQYMSSTLLKVATEHSSVVAVVGKGHLQGIKNYWKQ----PVPVHDLMTIPS  372 (405)
Q Consensus       297 ~~~D~l~~l~~em~~~~P~l~~~LIdERD~yMA~~L~~l~~~~~~VVaVVGagHL~GI~~~~~~----p~~~~~L~~lP~  372 (405)
                      +..|++..+++|+++.+|.+|++||||||+|||++|.+......+|||||||||..||++++++    |..+.||+++|+
T Consensus       163 ~~~D~~~al~~efr~~~P~~~~vLIDERd~ymA~nll~~~~~~~~vvAVVGAGH~~GI~~~L~~~~~~p~~l~el~~~~~  242 (388)
T COG1916         163 KQEDVLSALMQEFRRFSPTVYKVLIDERDRYMARNLLEIVSILNDVVAVVGAGHVRGIERYLKNSDSAPPHLEELTELEK  242 (388)
T ss_pred             hhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHcccCcEEEEEccccHHHHHHHHhccccCCccHHHHhcccc
Confidence            8899999999999999999999999999999999999997766779999999999999999976    444678899998


Q ss_pred             CCCCcchhHHH-HHHHHHHHHHHHHHhhhhcc
Q 046404          373 PKPAVSALKVL-SSLGVAVAGVAIISGIYINC  403 (405)
Q Consensus       373 ~~~~~~~~k~~-~~~~~~~~~~~~~~g~~~~~  403 (405)
                      .+.  +..|++ +|++.++++.+++++|++..
T Consensus       243 ~~~--s~~k~~~g~~~~~l~~~~iv~~~~~~~  272 (388)
T COG1916         243 KGS--SLGKVLLGILLAALLIFLIVICFGLGG  272 (388)
T ss_pred             ccc--chhhhHHHHHHHHHHHHHHHHHHhcCc
Confidence            764  467777 77777777878888888653

>KOG2860 consensus Uncharacterized conserved protein, contains TraB domain [Signal transduction mechanisms]

Probab=99.97  E-value=1.5e-31  Score=260.73  Aligned_cols=252  Identities=32%  Similarity=0.480  Sum_probs=190.5

Q ss_pred             ceEEEEecccCChhhHHHHHHHHHhhCCCEEEEeecchhhhccCCCCCC------CCchhHHHHHHHhcc---chHHHHH
Q 046404          143 CDVYLVGTAHVSKESCREVEAIIDFLKPQVVFLELCSSRVSMLTPQNLK------VPTVGEMVDMWKKKH---NTFGILY  213 (405)
Q Consensus       143 ~~IYLvGTaHvS~~Sa~~V~~~I~~vkPD~VvVELc~sR~~~L~~~~~~------~p~~~~l~~~~k~~~---~~~~l~l  213 (405)
                      +.||||||+|+|++|+++|..+|+.++||.|+||||++|......++-+      .-+-.++...+++.+   +.+.+.+
T Consensus        82 s~i~lVgTah~S~Es~~~v~~virtv~pd~V~vElCrsr~sIis~~ep~l~se~evl~g~~f~~~~~~~~~~gG~~~L~l  161 (359)
T KOG2860|consen   82 STIYLVGTAHFSKESQEDVSNVIRAVQPDFVMVELCRSRISIISADEPQLLSEAEVLNGAKFRGIFEEAGKIGGIVFLLL  161 (359)
T ss_pred             ceeEEEEeeecCccccccHHHHhhccCcceeehhhccchhhcccccChhhhccCcccCCcceeeeeccccccCceEehhh
Confidence            5799999999999999999999999999999999999998765432211      001111222222211   2233445


Q ss_pred             HHHHHHHhhhcCCCChHHHHHHHHHHHH-hCCeEEEcCchhHHHHHHhhhcCChHHHHHHHHHHHHHhccCCCHHHHHHH
Q 046404          214 SWFLAKVASHLEIFPGSEFRVAFEEAMK-YGGKVILGDRPVQITLRRTWEKMPLWHKIKLLYSFLFQAFFLPSAEDLNRM  292 (405)
Q Consensus       214 s~~l~~la~~lGv~PG~Ef~~Aie~A~e-~Ga~VvLgDRdiqiTlrRl~~~Ls~~ek~kll~~ll~~~~~~p~~eeie~l  292 (405)
                      ..++++....+++.||+||+.|.++|-+ .|+-++||||++++|+.|+|..+++|++.++.+.+-+..-.....++.+  
T Consensus       162 rsv~a~~~~dLdmaa~gefr~a~~efs~~~g~~v~lgDrpieitLqRa~~eLs~~~a~~lv~~vt~s~~~s~~t~eve--  239 (359)
T KOG2860|consen  162 RSVSAKDLGDLDMAAGGEFRRASREFSTLMGCLVVLGDRPIEITLQRALSELSSWQAVVLVGHVTFSKKNSIQTEEVE--  239 (359)
T ss_pred             hhhhhhhccccccccchhHHHHhhhhccCCCceEEecCCcceeeHHHHHHhcchhheeeEEEEEEEeeccccchhhhh--
Confidence            5566777888999999999999877755 5999999999999999999999999999877655432110111233333  


Q ss_pred             HHhccchhhHHHHHHHHHHhChhhhhhhHHhHHHHHHHHHHHhhhc---------CCcEEEEEcCCCchhhhhhcCCCCC
Q 046404          293 LKEMDDVDMLTLVIQEMSKAFPTLMETLVHERDQYMSSTLLKVATE---------HSSVVAVVGKGHLQGIKNYWKQPVP  363 (405)
Q Consensus       293 l~~l~~~D~l~~l~~em~~~~P~l~~~LIdERD~yMA~~L~~l~~~---------~~~VVaVVGagHL~GI~~~~~~p~~  363 (405)
                        ..++.|.+++++.+|...+|.+..+|+.|||.||++.|+.+...         +-.+|+|||.||.+||-+.|+. ++
T Consensus       240 --~c~q~~Lveql~~~~a~~vp~~~lvlv~eRd~yl~~slelif~v~~~~gq~~~~~mvvvVvgi~~~sG~~~~~~~-~~  316 (359)
T KOG2860|consen  240 --NCKQTDLVEQLTIEMANFVPALSLVLVQERDLYLCHSLELIFTVWLRGGQQILPYMVVVVVGIGHVSGIYLAWNT-ID  316 (359)
T ss_pred             --hhhHHhHHHHHHHHHHhhHHHHHHHHHHHHHhhhccchhheeeecccCCccccceEEEEEEEEEecchhhhhhcc-cC
Confidence              34667888999999999999999999999999999999876432         2478999999999999999998 77


Q ss_pred             CccccCCCCCCCCcchhHHHHHHHH-HHHHHHHHHhhhhccc
Q 046404          364 VHDLMTIPSPKPAVSALKVLSSLGV-AVAGVAIISGIYINCK  404 (405)
Q Consensus       364 ~~~L~~lP~~~~~~~~~k~~~~~~~-~~~~~~~~~g~~~~~~  404 (405)
                      .+.++.+|+++   ...|++++..= .++| + .++.|++.|
T Consensus       317 ~d~~~~~~~~~---~~qkv~k~~vr~~~ig-l-~~l~~r~~~  353 (359)
T KOG2860|consen  317 FDPLMNIPPPS---LGQKVFKTGVRIVVIG-L-GYLAYRGGR  353 (359)
T ss_pred             CCCcCCCCChH---HHHHHHhhchheeeee-h-HHHHHhhch
Confidence            76799999764   56888887753 5566 3 377777654

>PF01963 TraB: TraB family; InterPro: IPR002816 In prokaryotes, for example Enterococcus faecalis (Streptococcus faecalis), the conjugative transfer of certain plasmids is controlled by peptide pheromones []

Probab=99.92  E-value=4.5e-24  Score=203.77  Aligned_cols=208  Identities=25%  Similarity=0.336  Sum_probs=147.4

Q ss_pred             CCCceEEEEecccCChhhHHHHHHHHHh--hCCCEEEEee------------------cchhhhccCCCCCCCCchhHHH
Q 046404          140 GGTCDVYLVGTAHVSKESCREVEAIIDF--LKPQVVFLEL------------------CSSRVSMLTPQNLKVPTVGEMV  199 (405)
Q Consensus       140 ~~~~~IYLvGTaHvS~~Sa~~V~~~I~~--vkPD~VvVEL------------------c~sR~~~L~~~~~~~p~~~~l~  199 (405)
                      ++++++||+||+|+++.+...+...|++  .+||+|++|+                  |..++..+...    ..+..+.
T Consensus         7 ~~g~~~yL~GT~H~~~~~~~~~~~~i~~a~~~sd~v~~E~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~~~~l~   82 (259)
T PF01963_consen    7 KNGKTVYLLGTIHVSPKSFYPLPDAIEEALKKSDVVVVELDMSDPEAQAQMQQAMMLPDGKTLKDLLSP----EEYARLE   82 (259)
T ss_pred             cCCeEEEEEeccCCCchhhhhhHHHHHHHHhcCCEEEEecccccHHHHHHHHhhccCCCcccHHHhcCH----HHHHHHH
Confidence            4578999999999999999999999999  8999999999                  22222111110    0111111


Q ss_pred             HHHHhcc---------chHHHHHHHHHHHHhhhcCCCChHHHHHH-HHHHHHhCCeEE-EcCchhHHHHHHhhhcCChHH
Q 046404          200 DMWKKKH---------NTFGILYSWFLAKVASHLEIFPGSEFRVA-FEEAMKYGGKVI-LGDRPVQITLRRTWEKMPLWH  268 (405)
Q Consensus       200 ~~~k~~~---------~~~~l~ls~~l~~la~~lGv~PG~Ef~~A-ie~A~e~Ga~Vv-LgDRdiqiTlrRl~~~Ls~~e  268 (405)
                      ..+++.+         .++.+...+.+..+.+  |+.+...+... ...|++.|+++. |+|++.|+++   ++++|.++
T Consensus        83 ~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~~~--~~~~~~gvd~~l~~~A~~~~~~v~~Le~~~~q~~~---~~~~~~~~  157 (259)
T PF01963_consen   83 ELLAEYGLPLEMLRKLKPWAAAFLLSLSAFQK--GYSPEYGVDPYLEQRAAEEGKPVVGLETREEQITL---LRSLPLDE  157 (259)
T ss_pred             HHHHhcCCCHHHHHcCCHHHHHHHHHHHHHhc--cccccccccHHHHHHHHHhCCCcccccCHHHHHHH---HhcCCHHH
Confidence            2222211         1111211221222222  33333333332 256778888888 9999999986   45669999


Q ss_pred             HHHHHHHHHHHhccCCCHHHHHHHHHhccchhhHHHHHHHHHH--hChhhhhhhHHhHHHHHHHHHHHhhhcCCcEEEEE
Q 046404          269 KIKLLYSFLFQAFFLPSAEDLNRMLKEMDDVDMLTLVIQEMSK--AFPTLMETLVHERDQYMSSTLLKVATEHSSVVAVV  346 (405)
Q Consensus       269 k~kll~~ll~~~~~~p~~eeie~ll~~l~~~D~l~~l~~em~~--~~P~l~~~LIdERD~yMA~~L~~l~~~~~~VVaVV  346 (405)
                      +.+++..++....  ...+.++++++.|.++|. ..+.+.+.+  .+|.+++.|+++||++|+.+|.+++++++++|+||
T Consensus       158 q~~~L~~~l~~~~--~~~~~~~~~~~~~~~gd~-~~l~~~~~~~~~~p~~~~~ll~~RN~~~~~~i~~~l~~~~~~fvvV  234 (259)
T PF01963_consen  158 QVKMLRETLDDIE--DGEKMLEQLIEAWKNGDL-DALMELMKEDESFPELYEVLLDERNRRWAEKIEELLKEGGTVFVVV  234 (259)
T ss_pred             HHHHHHHHHhccc--cchHHHHHHHHHHHccCH-HHHHHHHHhcccCHHHHHHHHHHHhHHHHHHHHHHHhcCCCEEEEE
Confidence            9999999886532  245667888999999986 777777777  89999999999999999999999988778999999


Q ss_pred             cCCCchhhhhhcC
Q 046404          347 GKGHLQGIKNYWK  359 (405)
Q Consensus       347 GagHL~GI~~~~~  359 (405)
                      ||||+.|+.++++
T Consensus       235 Ga~HL~G~~gvl~  247 (259)
T PF01963_consen  235 GAGHLPGEDGVLD  247 (259)
T ss_pred             cchhccchhhHHH
Confidence            9999999888764

Plasmid free recipient cells secret plasmid specific oligopeptides, termed sex pheromones. They induce bacterial clumping and specifically activate the conjugative transfer of the corresponding plasmid. Once recipient cells acquire the plasmid they start to produce a pheromone inhibitor to block the activity of the pheromone and to prevent plasmid containing cells from clumping; they also become donor cells able to transfer the plasmid to plasmid free recipient cells. Examples of such plasmid-pheromone systems are bacteriocin plasmid pPD1 [], haemolysin/bacteriocin plasmid, pAD1 [], tetracycline-resistance plasmid, pCF10 [], and the haemolysin/bacteriocin plasmid, pOB1 []. TraB in combination with another factor contributes to pheromone shutdown in cells that have acquired a plasmid. It exact function has not yet been determined [, ]. This entry also contains plant and mammalian proteins, suggesting that these Trab-related proteins may have a somewhat wider or different function in eukaryotes.

>COG3735 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.61  E-value=1.4e-14  Score=141.86  Aligned_cols=212  Identities=19%  Similarity=0.208  Sum_probs=140.9

Q ss_pred             CCCceEEEEecccCCh----hhHHHHHHHHHhhCCCEEEEeecchh---hhccCCC----------CCC--C-CchhHHH
Q 046404          140 GGTCDVYLVGTAHVSK----ESCREVEAIIDFLKPQVVFLELCSSR---VSMLTPQ----------NLK--V-PTVGEMV  199 (405)
Q Consensus       140 ~~~~~IYLvGTaHvS~----~Sa~~V~~~I~~vkPD~VvVELc~sR---~~~L~~~----------~~~--~-p~~~~l~  199 (405)
                      .|++++||+||.|+..    .....+.++++.-  +.++||+|..-   ...++..          +..  + +.....+
T Consensus        39 ~G~s~~yL~GTiHvg~~~~~~lp~~~~~a~~~A--~tLivE~d~~~~~~~a~i~~~~~l~~~~~~~~l~~~Ls~e~~~~l  116 (299)
T COG3735          39 PGNSPLYLLGTIHVGSPRVLPLPDKLLKALDQA--DTLIVEADDIVKKNTAVILKQPMLTGFTDGENLEDRLSPEQLARL  116 (299)
T ss_pred             CCCCceEEeeeeecCCCccccCCHHHHHHHhhc--CceEEEeccccccchHHHhcccccccCCCCcchhhhcCHHHHHHH
Confidence            4567899999999988    3467778888775  99999999422   2222211          000  0 1111122


Q ss_pred             HHH-Hhcc-c--hH-----HHHHHHHHHHHhhhcCCCChHHHHHHH-HHHHHhCCeEEEcCchhHHHHHHhhhcCChHHH
Q 046404          200 DMW-KKKH-N--TF-----GILYSWFLAKVASHLEIFPGSEFRVAF-EEAMKYGGKVILGDRPVQITLRRTWEKMPLWHK  269 (405)
Q Consensus       200 ~~~-k~~~-~--~~-----~l~ls~~l~~la~~lGv~PG~Ef~~Ai-e~A~e~Ga~VvLgDRdiqiTlrRl~~~Ls~~ek  269 (405)
                      +.+ ++-+ +  .+     ..+.+.++.......|..++..++.-+ ++|++.|.||+ |..+.+.++ +++..+|....
T Consensus       117 e~~~~~lGi~~~~~~~~~pW~la~~L~~~~~~~~~~~~~~giD~~L~q~A~~~~k~I~-gLEt~~~Ql-~~l~~LP~d~~  194 (299)
T COG3735         117 EMILQELGIPLQALSKMPPWQLASVLAATQCEKAGLRGEYGIDYQLLQAAKAQNKPIL-GLETAEEQL-AALASLPLDFG  194 (299)
T ss_pred             HHHHHHcCCCHHHHhcCCcHHHHHHHHHHHHHHcCcCcccchhHHHHHHHHHcCCCcc-chhhHHHHH-HHHHcCChHHH
Confidence            222 2222 1  11     123333344455677877888886665 99999999999 666666666 56788997777


Q ss_pred             HHHHHHHHHHhccCCCHHHHHHHHHhccchh--hHHHHHHH---HHHhChhhhhhhHHhHHHHHHHHHHHhhhcCCcEEE
Q 046404          270 IKLLYSFLFQAFFLPSAEDLNRMLKEMDDVD--MLTLVIQE---MSKAFPTLMETLVHERDQYMSSTLLKVATEHSSVVA  344 (405)
Q Consensus       270 ~kll~~ll~~~~~~p~~eeie~ll~~l~~~D--~l~~l~~e---m~~~~P~l~~~LIdERD~yMA~~L~~l~~~~~~VVa  344 (405)
                      ++++.+++.-..  ...+-++.++..|.++|  ++......   +...++.+++.|+.+||..|+.+ +...-.+++.|+
T Consensus       195 i~~L~~tl~~~~--~~~d~l~tmi~~~l~gD~~~~~~~~~~~~~~~~~~~~~~~~li~~RN~~wad~-~~~~l~~G~~fv  271 (299)
T COG3735         195 IELLIDTLALGD--TNADLLETMIDLWLNGDVGMFMPNLQAILPNKTFYADLYDVLITQRNRAWADK-KTPLLQGGRYFV  271 (299)
T ss_pred             HHHHHHHHHccc--cHHHHHHHHHHHHHcCCcchhhHHHhhhCccccchHHHHHHHHHHHHHHHHHh-hccccCCCCEEE
Confidence            888888775332  23455788999999988  33333333   23568889999999999999997 433346899999


Q ss_pred             EEcCCCchhhhhhc
Q 046404          345 VVGKGHLQGIKNYW  358 (405)
Q Consensus       345 VVGagHL~GI~~~~  358 (405)
                      +|||+|+.|-+++.
T Consensus       272 aVGAlHL~G~e~L~  285 (299)
T COG3735         272 AVGALHLPGPEGLV  285 (299)
T ss_pred             EeccccccCcccHH
Confidence            99999999977653

>PF04187 DUF399: Protein of unknown function, DUF399; InterPro: IPR007314 No function is known for any member of this family

Probab=96.08  E-value=0.13  Score=48.95  Aligned_cols=176  Identities=17%  Similarity=0.188  Sum_probs=73.4

Q ss_pred             CceEEEEecccCChhh----HHHHHHHHHhhCCCEEEEeecchhhhccCCCCCCCCchhHHHHHHHhcc---chHHHHHH
Q 046404          142 TCDVYLVGTAHVSKES----CREVEAIIDFLKPQVVFLELCSSRVSMLTPQNLKVPTVGEMVDMWKKKH---NTFGILYS  214 (405)
Q Consensus       142 ~~~IYLvGTaHvS~~S----a~~V~~~I~~vkPD~VvVELc~sR~~~L~~~~~~~p~~~~l~~~~k~~~---~~~~l~ls  214 (405)
                      +.+|.+||=.|-.+..    .+-++.+....++=+|.+|.=....+             ..++.+..+.   ..|.-.+.
T Consensus        13 ~~~vVllGE~Hdn~~~H~~Ql~ll~~L~~~~~~~al~lEmf~~~~Q-------------~~Ld~~~~g~i~e~~l~~~~~   79 (213)
T PF04187_consen   13 NADVVLLGEQHDNPDHHRLQLELLRALYAQRPPLALGLEMFERDQQ-------------PALDRYLAGKIDEEELLEQLD   79 (213)
T ss_dssp             T-SEEEEEE-TT-HHHHHHHHHHHHHHHHTT--EEEEEEEEEGGGH-------------HHHHHHHHTG--TTTHHHHTT
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEecCCcccc-------------HHHHHHHhCcccHHHHHHHhc
Confidence            5689999999999955    33333433455677888885333322             2222222221   11110001


Q ss_pred             HHHHHHhhhcCCC-ChHHHHHHHHHHHHhCCeEEEcCchhHHHHHHh---hhcCChHHHHHHHHHHHHHhccCCCHHHHH
Q 046404          215 WFLAKVASHLEIF-PGSEFRVAFEEAMKYGGKVILGDRPVQITLRRT---WEKMPLWHKIKLLYSFLFQAFFLPSAEDLN  290 (405)
Q Consensus       215 ~~l~~la~~lGv~-PG~Ef~~Aie~A~e~Ga~VvLgDRdiqiTlrRl---~~~Ls~~ek~kll~~ll~~~~~~p~~eeie  290 (405)
                      |.     +  ++. +-...+--++.|++.++||+=+..|-+..-+-.   +++|+..++..+...     ... ..+..+
T Consensus        80 w~-----~--~W~~~~~~Y~pl~~~Ar~~~ipviA~N~pr~~~~~V~~~G~~~L~~~~r~~l~~~-----~~~-~~~~~~  146 (213)
T PF04187_consen   80 WD-----R--RWPNDWALYRPLVEFARENGIPVIALNVPRELVRKVAREGLDSLSEEERAWLPPD-----IPL-PDPAYR  146 (213)
T ss_dssp             -------T--TS---GGGTHHHHHHHHTSS--EEEEE--HHHHHHHHT---------T------S-----SSS--HHHHH
T ss_pred             cc-----c--CCCCchHHHHHHHHHHHHCCCCEEEecCCHHHHHHHHHhcccchhhhhHhhcCCC-----CCC-ChHHHH
Confidence            10     0  121 122334457899999999996666655532211   234444443222210     001 112222


Q ss_pred             HHHHhccchhhHHHHHHHHHHhChhhhhhhHH---hHHHHHHHHHHHhhhcCCcEEEEEcCCCch
Q 046404          291 RMLKEMDDVDMLTLVIQEMSKAFPTLMETLVH---ERDQYMSSTLLKVATEHSSVVAVVGKGHLQ  352 (405)
Q Consensus       291 ~ll~~l~~~D~l~~l~~em~~~~P~l~~~LId---ERD~yMA~~L~~l~~~~~~VVaVVGagHL~  352 (405)
                      ..         +..++.......|.-.+.++.   -||..||..|.+...+++++|+|+|.||+.
T Consensus       147 ~~---------~~~~~~~h~~~~~~~~~~~~~aQ~~~D~~MA~~i~~~~~~~~~vv~i~G~gH~~  202 (213)
T PF04187_consen  147 AR---------LQEIFAGHCGMLPESLERFYEAQQLWDATMAESIAAALHPGRPVVVIAGNGHVR  202 (213)
T ss_dssp             HH---------HHHHHHHHT--TTTTHHHHHHHHHHHHHHHHHHHHH-S---SEEEEEEEHHHH-
T ss_pred             HH---------HHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhccCeEEEEeCcchhc
Confidence            11         122222221112211222221   299999999999876678999999999984

; PDB: 2G5G_X.

>KOG2860 consensus Uncharacterized conserved protein, contains TraB domain [Signal transduction mechanisms]

Probab=95.73  E-value=0.00074  Score=67.56  Aligned_cols=108  Identities=36%  Similarity=0.331  Sum_probs=84.2

Q ss_pred             HhhhcCCCChHHHHHHHHHHHHhCCeEEEcCchhHHHHHHhhhcCChHHHHHHHHHHHHHhccCCCHHHHHHHHHhccch
Q 046404          220 VASHLEIFPGSEFRVAFEEAMKYGGKVILGDRPVQITLRRTWEKMPLWHKIKLLYSFLFQAFFLPSAEDLNRMLKEMDDV  299 (405)
Q Consensus       220 la~~lGv~PG~Ef~~Aie~A~e~Ga~VvLgDRdiqiTlrRl~~~Ls~~ek~kll~~ll~~~~~~p~~eeie~ll~~l~~~  299 (405)
                      +.++...-+|++|+.+++.|-+.|-.+.|+||-++....+-.                                      
T Consensus       131 l~se~evl~g~~f~~~~~~~~~~gG~~~L~lrsv~a~~~~dL--------------------------------------  172 (359)
T KOG2860|consen  131 LLSEAEVLNGAKFRGIFEEAGKIGGIVFLLLRSVSAKDLGDL--------------------------------------  172 (359)
T ss_pred             hhccCcccCCcceeeeeccccccCceEehhhhhhhhhhcccc--------------------------------------
Confidence            345566779999999999999999999999986664221110                                      


Q ss_pred             hhHH-HHHHHHHHhChhhhhhhHHhHHHHHHHHHHHhhhcCCcEEEEEcCCCchhhhhhcCCCCCCc
Q 046404          300 DMLT-LVIQEMSKAFPTLMETLVHERDQYMSSTLLKVATEHSSVVAVVGKGHLQGIKNYWKQPVPVH  365 (405)
Q Consensus       300 D~l~-~l~~em~~~~P~l~~~LIdERD~yMA~~L~~l~~~~~~VVaVVGagHL~GI~~~~~~p~~~~  365 (405)
                      |++. .-+..+.+.|+.+...++++||++|.-+|++...+....+++++-+|+.++++.|...++++
T Consensus       173 dmaa~gefr~a~~efs~~~g~~v~lgDrpieitLqRa~~eLs~~~a~~lv~~vt~s~~~s~~t~eve  239 (359)
T KOG2860|consen  173 DMAAGGEFRRASREFSTLMGCLVVLGDRPIEITLQRALSELSSWQAVVLVGHVTFSKKNSIQTEEVE  239 (359)
T ss_pred             ccccchhHHHHhhhhccCCCceEEecCCcceeeHHHHHHhcchhheeeEEEEEEEeeccccchhhhh
Confidence            1110 11344567789999999999999999999999888889999999999999999998765543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	405
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 5e-04
 Identities = 51/344 (14%), Positives = 93/344 (27%), Gaps = 114/344 (33%)

Query: 36  PTSLPLSLTKQFSPLLSTRITSFATANDPNFPKMDPNPPESGEEFVHV--DPLSESI-VS 92
           P  LP       +P     ++  A        +   +   + + + HV  D L+  I  S
Sbjct: 315 PQDLP-REVLTTNPRR---LSIIA--------ESIRDGLATWDNWKHVNCDKLTTIIESS 362

Query: 93  LG----DEVRDESSD----RDETNGAVPVPEETKKVL----PEELPRSVVILTCDST--- 137
           L      E R                  +P     ++     +     VV      +   
Sbjct: 363 LNVLEPAEYRKMFDRLSVFPPS----AHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE 418

Query: 138 --AEGGTC---DVYLVGTAHVSKESCREVEA-IIDFLKPQVVFLELCSSRVSMLTPQNLK 191
              +  T     +YL     +  E    +   I+D       F    S     L P  L 
Sbjct: 419 KQPKESTISIPSIYLELKVKLENE--YALHRSIVDHYNIPKTF---DSDD---LIPPYL- 469

Query: 192 VPTVGEMVDMWKKKHNTFGILYS-WFLA---KVASHLEIFPGSEFRVAFEEAMKYGGKVI 247
                   D            Y    +    K   H E    + FR            V 
Sbjct: 470 --------DQ-----------YFYSHIGHHLKNIEHPERM--TLFR-----------MVF 497

Query: 248 LGDRPVQITLRRTWEKMPLWHKIKLLYSFL-----FQAFFLPSAEDLNRMLKEMDDVDML 302
           L  R ++  +R        W+    + + L     ++ +   +     R++  + D    
Sbjct: 498 LDFRFLEQKIRHD---STAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILD---- 550

Query: 303 TLVIQEMSKAF-PTLMETLVHERDQYMSSTLLKVA--TEHSSVV 343
                     F P + E L+  +     + LL++A   E  ++ 
Sbjct: 551 ----------FLPKIEENLICSKY----TDLLRIALMAEDEAIF 580

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	405
2g5g_X	268	Putative lipoprotein; cofacial heme, tyrosine liga	93.92
2qgm_A	445	Succinoglycan biosynthesis protein; Q817Z0, NESG,	84.11

>2g5g_X Putative lipoprotein; cofacial heme, tyrosine ligand, dimer, transport protein; HET: HEM; 1.90A {Campylobacter jejuni subsp} SCOP: c.150.1.1

Probab=93.92  E-value=1.4  Score=42.25  Aligned_cols=34  Identities=24%  Similarity=0.371  Sum_probs=29.5

Q ss_pred             HHHHHHHHHHHhhhcCCcEEEEEcCCCch---hhhhhcCC
Q 046404          324 RDQYMSSTLLKVATEHSSVVAVVGKGHLQ---GIKNYWKQ  360 (405)
Q Consensus       324 RD~yMA~~L~~l~~~~~~VVaVVGagHL~---GI~~~~~~  360 (405)
                      ||+.||..|.+   .++++|+|.|.||..   ||-.++.+
T Consensus       200 rD~~MA~~i~~---~~~~vv~iaG~gH~~~~~Gvp~~l~~  236 (268)
T 2g5g_X          200 KDRRMADVLVH---HVNKVLLLAGSYHTSKKIGIPLHIQD  236 (268)
T ss_dssp             HHHHHHHHHHH---CSSEEEEEEEHHHHCTTTSHHHHHHH
T ss_pred             HHHHHHHHHHh---CCCeEEEEeCcchhcCCCcHHHHHHH
Confidence            99999999975   367899999999998   88888774

>2qgm_A Succinoglycan biosynthesis protein; Q817Z0, NESG, X-RAY, BCR136, structural genomics, PSI-2, protein structure initiative; 1.70A {Bacillus cereus atcc 14579} SCOP: c.150.1.3

Probab=84.11  E-value=6.5  Score=40.14  Aligned_cols=41  Identities=20%  Similarity=0.119  Sum_probs=36.0

Q ss_pred             CCceEEEEec-ccCChhh----HHHHHHHHHhhCCCEEEEeecchh
Q 046404          141 GTCDVYLVGT-AHVSKES----CREVEAIIDFLKPQVVFLELCSSR  181 (405)
Q Consensus       141 ~~~~IYLvGT-aHvS~~S----a~~V~~~I~~vkPD~VvVELc~sR  181 (405)
                      ++.+|.+||= .|...+.    ++-++.+|++....+|++|-+-..
T Consensus        72 ~~ariV~lGEatHG~~e~~~~r~~l~r~Lve~~gf~~va~E~~~~~  117 (445)
T 2qgm_A           72 GNAQYVGLGENTHGSSEIFTMKFRLVKYLVTEMGFTNFAMEEDWGN  117 (445)
T ss_dssp             TTCSEEEECCSSSCBHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHH
T ss_pred             cCCCEEEEcCCCCCchHHHHHHHHHHHHHHHhcCCeEEEEecChHH
Confidence            4678999998 9999977    888999999999999999998654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	405
d2g5gx1	255	Heme transport protein ChaN {Campylobacter jejuni	94.21
d2ebfx2	219	Dermonecrotic toxin, ToxA {Pasteurella multocida [	88.62

>d2g5gx1 c.150.1.1 (X:9-263) Heme transport protein ChaN {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: EreA/ChaN-like
superfamily: EreA/ChaN-like
family: ChaN-like
domain: Heme transport protein ChaN
species: Campylobacter jejuni [TaxId: 197]

Probab=94.21  E-value=1.2  Score=39.85  Aligned_cols=34  Identities=24%  Similarity=0.350  Sum_probs=28.7

Q ss_pred             HHHHHHHHHHHhhhcCCcEEEEEcCCCc---hhhhhhcCC
Q 046404          324 RDQYMSSTLLKVATEHSSVVAVVGKGHL---QGIKNYWKQ  360 (405)
Q Consensus       324 RD~yMA~~L~~l~~~~~~VVaVVGagHL---~GI~~~~~~  360 (405)
                      ||+.||..|.+   .++++|++.|.||+   -||-.++.+
T Consensus       189 ~Da~MA~~i~~---~~~~vvvIaG~gH~~~~~GiP~~L~~  225 (255)
T d2g5gx1         189 KDRRMADVLVH---HVNKVLLLAGSYHTSKKIGIPLHIQD  225 (255)
T ss_dssp             HHHHHHHHHHH---CSSEEEEEEEHHHHCTTTSHHHHHHH
T ss_pred             HHHHHHHHHHh---cCCeEEEEcCcchhcCCccHHHHHHh
Confidence            99999999965   46789999999999   478887763

>d2ebfx2 c.150.1.2 (X:875-1093) Dermonecrotic toxin, ToxA {Pasteurella multocida [TaxId: 747]}

class: Alpha and beta proteins (a/b)
fold: EreA/ChaN-like
superfamily: EreA/ChaN-like
family: PMT domain-like
domain: Dermonecrotic toxin, ToxA
species: Pasteurella multocida [TaxId: 747]

Probab=88.62  E-value=1.4  Score=38.40  Aligned_cols=147  Identities=13%  Similarity=0.060  Sum_probs=84.6

Q ss_pred             EEEEecccCChhhHHHHHHHHHhhCCCEEEEe-ecchhhhccCCCCCCCCchhHHHHHHHhccchHHHHHHHHHHHHhhh
Q 046404          145 VYLVGTAHVSKESCREVEAIIDFLKPQVVFLE-LCSSRVSMLTPQNLKVPTVGEMVDMWKKKHNTFGILYSWFLAKVASH  223 (405)
Q Consensus       145 IYLvGTaHvS~~Sa~~V~~~I~~vkPD~VvVE-Lc~sR~~~L~~~~~~~p~~~~l~~~~k~~~~~~~l~ls~~l~~la~~  223 (405)
                      =-+||-+|.|.....+=-.++.+..-..+.+| ||.+-.+             ..++.+-+.+++..- ++.+++.   .
T Consensus        37 Gllige~hgS~RfvienM~~Lk~~GVTvI~lEHL~sD~~Q-------------~~Id~Yl~~G~~S~~-L~a~Lk~---l   99 (219)
T d2ebfx2          37 GVAFQNSSKSIDFFLNNLTTFIDNGLTEIAISDLPYDIVQ-------------QEISQFLQGSNEWKT-LDAMLFN---L   99 (219)
T ss_dssp             EEEEESCHHHHHHHHHTHHHHHHTTCCEEEEEEEEHHHHH-------------HHHHHHHTTCSCCHH-HHHHHHH---H
T ss_pred             ceEEecCcchHHHHHHhhHHHHHCCceEEeHhhhhhhHHH-------------HHHHHHHhcCcCCcc-HHHHHHH---h
Confidence            46889889887665555556666667788888 4433322             122222222221110 1122222   2


Q ss_pred             cCCCChHHHHHHHHHHHHhCCeEEEcCchhHHHHHHhhhcCChHHHHHHHHHHHHHhccCCCHHHHHHHHHhccchhhHH
Q 046404          224 LEIFPGSEFRVAFEEAMKYGGKVILGDRPVQITLRRTWEKMPLWHKIKLLYSFLFQAFFLPSAEDLNRMLKEMDDVDMLT  303 (405)
Q Consensus       224 lGv~PG~Ef~~Aie~A~e~Ga~VvLgDRdiqiTlrRl~~~Ls~~ek~kll~~ll~~~~~~p~~eeie~ll~~l~~~D~l~  303 (405)
                      ++..+-+.|+.-++.|++.|++|+..|-...        +                   .|.-+.-+.-+          
T Consensus       100 ~~~d~~gaf~~Li~~Ar~ngikI~aLd~~st--------s-------------------~p~~~~~e~~l----------  142 (219)
T d2ebfx2         100 DKGDINGAFRKLLQSAKDNNIKFRAIGHSDN--------S-------------------VPPFNNPYKSL----------  142 (219)
T ss_dssp             TTTCSSCHHHHHHHHHHHTTCEEEEEECCTT--------C-------------------SSCCCSHHHHH----------
T ss_pred             hcccchhhHHHHHHHHHHCCcEEEEccCCCc--------c-------------------cCCCCCcccee----------
Confidence            2456666888899999999999995553211        0                   11101101000          


Q ss_pred             HHHHHHHHhChhhhhhhHHhHHHHHHHHHHHhhhcCCcEEEEEcCCCc----------hhhhhhcCCCCC
Q 046404          304 LVIQEMSKAFPTLMETLVHERDQYMSSTLLKVATEHSSVVAVVGKGHL----------QGIKNYWKQPVP  363 (405)
Q Consensus       304 ~l~~em~~~~P~l~~~LIdERD~yMA~~L~~l~~~~~~VVaVVGagHL----------~GI~~~~~~p~~  363 (405)
                                        --|+-+-+..|+++-.++++.||++|.+|+          +||..+++-|+-
T Consensus       143 ------------------~yr~nia~e~l~~L~~~geKfVa~~gsahl~S~~Gi~~~vpGi~~~l~lpal  194 (219)
T d2ebfx2         143 ------------------YYKGNIIAEAIEKLDREGQKFVVFADSSLLNSTPGTGRPMPGLVQYLKIPAT  194 (219)
T ss_dssp             ------------------HHHHHHHHHHHHHTSCTTCCEEEEECHHHHSCEEBSSSEECCHHHHHTCCEE
T ss_pred             ------------------eehhhHHHHHHHhCCccCCeEEEEechhhhhcCCCcCCCCcchHHhcCCceE
Confidence                              013455677787775578999999999994          677777776643